BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016811
(382 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225448126|ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
gi|297739525|emb|CBI29707.3| unnamed protein product [Vitis vinifera]
Length = 380
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/373 (66%), Positives = 281/373 (75%), Gaps = 36/373 (9%)
Query: 6 KRISECSEQASKIP--EEKEEDHQNDSVEEEEEYPEEVPETRTVTEVMSTNKRIQRYLIA 63
R SE ++ SKI ++ + Q DSV ++ M+ N R+QRYL+A
Sbjct: 23 NRRSESPQRPSKIARTDDLSDGEQQDSV---------------ASKTMTQNPRVQRYLVA 67
Query: 64 VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVE 123
VEYIGTRFSGSQ+QLNCRTV G L+EAFHKFIGQPVSI SSRTDAGVHA SNVCHVDVE
Sbjct: 68 VEYIGTRFSGSQQQLNCRTVAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVE 127
Query: 124 RISKRKPGEVLPPHDSSVVRRAVNHFLQ-SEGDIMVTDVRCVPSDFHARFRAQERTYFYR 182
RISKRKPGEVLPPH+ +VVRRAVNHFLQ +EGD+MV DVRCVP DFHAR++A+ERTYFYR
Sbjct: 128 RISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARERTYFYR 187
Query: 183 ILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDE 242
+LSGPEPLS FEKDRAWHV E+LDL AMQ+AC+VLVGCHDFSSFRA+GCQA SPIRTLDE
Sbjct: 188 LLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSPIRTLDE 247
Query: 243 LHVSEVVSTALFSSI------------------NQDSPVLSSIDNSSKLGMPNGGSNVFG 284
L VSEV+ T F SI N + P S N +L NG FG
Sbjct: 248 LCVSEVLPTPYFPSITERAQNNFTEENPLACSNNAEVPDSPSTANHDRLDGFNGAGQGFG 307
Query: 285 IRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPA 344
+R++HR + V ARARSFLYHQVRL+VGV+K VGTG+LTVSDVERIL AKTVTAASPMAPA
Sbjct: 308 VRRRHRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTAASPMAPA 367
Query: 345 CGLSLGFVKYDLP 357
CGL LG V YDLP
Sbjct: 368 CGLYLGNVNYDLP 380
>gi|255571004|ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223534233|gb|EEF35948.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 372
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/330 (73%), Positives = 269/330 (81%), Gaps = 19/330 (5%)
Query: 47 VTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSR 106
V E MS+N ++QRYLIAVEYIGT+F+GSQKQLN RTVVGVLEEAF KFIGQ VS+SLSSR
Sbjct: 43 VAESMSSNPKLQRYLIAVEYIGTKFAGSQKQLNGRTVVGVLEEAFCKFIGQQVSVSLSSR 102
Query: 107 TDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ-SEGDIMVTDVRCVP 165
TDAGVHA SNVCHVD+ERISKRKPGEVLPPH+ +VVRRAVNHFLQ +EGDIMVTDVRCVP
Sbjct: 103 TDAGVHALSNVCHVDIERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDIMVTDVRCVP 162
Query: 166 SDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSS 225
SDFHARF+AQERTYFYR LSGPEPLS FEKDRAWHV E+LD+ AMQEACKVLVG HDFSS
Sbjct: 163 SDFHARFKAQERTYFYRFLSGPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSS 222
Query: 226 FRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSS----KLGMPNG--- 278
FRASGCQA SPIRTL E+ VSEV ST F SI + + +NS K +P G
Sbjct: 223 FRASGCQAKSPIRTLAEISVSEVASTLYFPSITEREQNCENGENSCCKKFKTDLPMGSHS 282
Query: 279 GSNV-----------FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVE 327
+NV FGIR++HR + V ARARSFLYHQVRL+VGVLK+VG G+LT SDVE
Sbjct: 283 NTNVAESSFGETDLGFGIRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDVE 342
Query: 328 RILKAKTVTAASPMAPACGLSLGFVKYDLP 357
RIL AK+VTAASPMAPA GL LG VKYDLP
Sbjct: 343 RILSAKSVTAASPMAPARGLYLGHVKYDLP 372
>gi|356543399|ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
Length = 369
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/369 (65%), Positives = 274/369 (74%), Gaps = 34/369 (9%)
Query: 10 ECSEQASKIPEEKEEDHQNDSVEEEEEYPEEVPETRTVTEVMSTNKR--IQRYLIAVEYI 67
ECS+ + K E + ++EEEE MS N R IQRYL+A+EYI
Sbjct: 12 ECSDNSRPSKISKIEYPSDSDIDEEEEG-------------MSQNPRNGIQRYLVAIEYI 58
Query: 68 GTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISK 127
GT FSGSQKQLN RTVVG LEEAF KF+GQPVS+S SSRTDAGVHA SNVCHVD++RISK
Sbjct: 59 GTLFSGSQKQLNVRTVVGALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISK 118
Query: 128 RKPGEVLPPHDSSVVRRAVNHFLQS-EGDIMVTDVRCVPSDFHARFRAQERTYFYRILSG 186
R+PGEVLPPH+ +VV RAVNHFLQ + D+MV DVRCVPSDFHARF+AQERTYFYR+LSG
Sbjct: 119 RRPGEVLPPHEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLSG 178
Query: 187 PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVS 246
PEPLS FEKDRAWHV EEL L AMQEAC+VLVGCHDFSSFRA+GCQA SPIRTLDEL V+
Sbjct: 179 PEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDELSVN 238
Query: 247 EVVSTALFSSI------NQDSPVLSSIDNSSKLGMP------------NGGSNVFGIRKK 288
EV+ + F S+ N+ S L S N+++ +P + FG R++
Sbjct: 239 EVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNPSIDKVITSSQDAGFGKRRR 298
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
HR V ARARSFLYHQVRL+VGVLKA GTG LT+ DVERIL AKTVTAASPMAPACGL
Sbjct: 299 HRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERILNAKTVTAASPMAPACGLY 358
Query: 349 LGFVKYDLP 357
LG VKYDLP
Sbjct: 359 LGEVKYDLP 367
>gi|224119986|ref|XP_002331109.1| predicted protein [Populus trichocarpa]
gi|222872837|gb|EEF09968.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/322 (72%), Positives = 260/322 (80%), Gaps = 25/322 (7%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QRYL+AVEYIGTRF GSQ+QLN RTVVGVL+EAFHKFIGQPV+I LSSRTDAGVHA SN
Sbjct: 5 LQRYLVAVEYIGTRFCGSQQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHALSN 64
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ-SEGDIMVTDVRCVPSDFHARFRAQ 175
VCHVDVERISKRKPGEVLPPH+ +VVR+AVNHFLQ EGDIMVTDVR V + FHARF+AQ
Sbjct: 65 VCHVDVERISKRKPGEVLPPHEPAVVRKAVNHFLQKKEGDIMVTDVRSVSAHFHARFKAQ 124
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
ERTYFYR+L GPE LS FEKDRAWHV+EELDL +MQEACKVLVG HDFSSFRASGCQA S
Sbjct: 125 ERTYFYRLLIGPELLSTFEKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKS 184
Query: 236 PIRTLDELHVSEVVSTALFSSI--------NQDSPVLSSIDNSSKLGMPN---------G 278
P RTL+EL V EVVST F SI N + P S N K G+P G
Sbjct: 185 PFRTLEELSVLEVVSTPYFPSITEREQNSSNGEGP--HSFHNKCKTGLPTGSISNGFMAG 242
Query: 279 GSNV-----FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK 333
GSN FGIR++HR Y + AR+RSFLYHQVRL+VGVLK+VGTG+LTVSDVERIL A+
Sbjct: 243 GSNSGTDLGFGIRRRHRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNAR 302
Query: 334 TVTAASPMAPACGLSLGFVKYD 355
++TAASPMAPACGL LG VKY+
Sbjct: 303 SITAASPMAPACGLYLGHVKYE 324
>gi|363807780|ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycine max]
gi|255637177|gb|ACU18919.1| unknown [Glycine max]
Length = 370
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/330 (69%), Positives = 259/330 (78%), Gaps = 21/330 (6%)
Query: 49 EVMSTNKR--IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSR 106
E M N R IQRYL+A+EYIGTRFSGSQKQLN RTVVGVLEEAF KF+GQPVS+S SSR
Sbjct: 39 EEMIKNPRNGIQRYLVAIEYIGTRFSGSQKQLNVRTVVGVLEEAFSKFVGQPVSVSCSSR 98
Query: 107 TDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE-GDIMVTDVRCVP 165
T AGVHA SNVCHVD++RISKR+PGEVL PH+ +VV RAVNHFLQ + D+MV DVRCVP
Sbjct: 99 TVAGVHALSNVCHVDIQRISKRRPGEVLTPHEPAVVGRAVNHFLQKQDSDLMVIDVRCVP 158
Query: 166 SDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSS 225
SDFHARF+AQER YFYR+LSGPEPLS FEKDRAWHV EEL L AMQEAC+VLVG HDFSS
Sbjct: 159 SDFHARFKAQERIYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSS 218
Query: 226 FRASGCQANSPIRTLDELHVSEVVSTALFSSI------NQDSPVLSSIDNSSKLGMPNGG 279
FRA+GCQA SPIRTLDEL V+EV+ + F S+ N+ S L S N+S+ +P
Sbjct: 219 FRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTS 278
Query: 280 SNV------------FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVE 327
+ FG R++HR V ARAR+FLYHQVRL+VGVLKAVGTG LT+ DVE
Sbjct: 279 NPSIDKVMASSQDVGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVE 338
Query: 328 RILKAKTVTAASPMAPACGLSLGFVKYDLP 357
RIL A+TVTAASPMAPACGL LG VKYDLP
Sbjct: 339 RILNARTVTAASPMAPACGLYLGEVKYDLP 368
>gi|46931324|gb|AAT06466.1| At1g09800 [Arabidopsis thaliana]
Length = 372
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/346 (64%), Positives = 265/346 (76%), Gaps = 25/346 (7%)
Query: 32 EEEEEYPEEVPETRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAF 91
+EE E + + + ++ V N R+QRYL+A+EYIGTRFSGSQ+Q RTVVGVL+EAF
Sbjct: 32 DEESEEQQGLADLESMNPV---NPRVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAF 88
Query: 92 HKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ 151
HKFIGQPV I SSRTDAGVHA SNVCHVDVERISKRKPGEVLPPH+ VV+RAVNHFLQ
Sbjct: 89 HKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQ 148
Query: 152 -SEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAM 210
+GD+MV DVRCVPS++HAR++AQERTYFYR+LSG +PLS+ EKDR WHV EEL+LR M
Sbjct: 149 RKDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFM 208
Query: 211 QEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNS 270
QEAC+VLVG HDFSSFRA+GCQA SP+R+LDEL+++EV ST F SI + + LS+++N
Sbjct: 209 QEACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNITEVPSTPYFPSITERT--LSNLNNG 266
Query: 271 SKLGMPN-------------------GGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVG 311
L N G + FG R++HR Y V AR+R FLYHQVRLIVG
Sbjct: 267 DPLACSNQPKSETAGVTTNVGEVEGSTGGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVG 326
Query: 312 VLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
LK VGTGELTVSDVERIL+AKTV+AA PMAPA GL L V+Y+ P
Sbjct: 327 ALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLARVRYEFP 372
>gi|51971559|dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana]
gi|51971573|dbj|BAD44451.1| unnamed protein product [Arabidopsis thaliana]
Length = 368
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/324 (67%), Positives = 255/324 (78%), Gaps = 22/324 (6%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
N R+QRYL+A+EYIGTRFSGSQ+Q RTVVGVL+EAFHKFIGQPV I SSRTDAGVHA
Sbjct: 47 NPRVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHA 106
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ-SEGDIMVTDVRCVPSDFHARF 172
SNVCHVDVERISKRKPGEVLPPH+ VV+RAVNHFLQ +GD+MV DVRCVPS++HAR+
Sbjct: 107 LSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARY 166
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+AQERTYFYR+LSG +PLS+ EKDR WHV EEL+LR MQEAC+VLVG HDFSSFRA+GCQ
Sbjct: 167 KAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQ 226
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPN--------------- 277
A SP+R+LDEL+++EV ST F SI + + LS+++N L N
Sbjct: 227 AKSPMRSLDELNITEVPSTPYFPSITERT--LSNLNNGDPLACSNQPKSETAGVTTNVGE 284
Query: 278 ----GGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK 333
G + FG R++HR Y V AR+R FLYHQVRLIVG LK VGTGELTVSDVERIL+AK
Sbjct: 285 VEGSTGGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAK 344
Query: 334 TVTAASPMAPACGLSLGFVKYDLP 357
TV+AA PMAPA GL L V+Y+ P
Sbjct: 345 TVSAAKPMAPASGLYLARVRYEFP 368
>gi|42561874|ref|NP_172451.2| tRNA pseudouridine synthase A [Arabidopsis thaliana]
gi|332190374|gb|AEE28495.1| tRNA pseudouridine synthase A [Arabidopsis thaliana]
Length = 372
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/324 (67%), Positives = 256/324 (79%), Gaps = 22/324 (6%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
N R+QRYL+A+EYIGTRFSGSQ+Q RTVVGVL+EAFHKFIGQPV I SSRTDAGVHA
Sbjct: 51 NPRVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHA 110
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ-SEGDIMVTDVRCVPSDFHARF 172
SNVCHVDVERISKRKPGEVLPPH+ VV+RAVNHFLQ +GD+MV DVRCVPS++HAR+
Sbjct: 111 LSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARY 170
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+AQERTYFYR+LSG +PLS+ EKDR WHV EEL+LR MQEAC+VLVG HDFSSFRA+GCQ
Sbjct: 171 KAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQ 230
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNG--------GSNV-- 282
A SP+R+LDEL+++EV ST F SI + + LS+++N L N +NV
Sbjct: 231 AKSPMRSLDELNITEVPSTPYFPSITERT--LSNLNNGDPLACSNQPKSETAGVTTNVGE 288
Query: 283 ---------FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK 333
FG R++HR Y V AR+R FLYHQVRLIVG LK VGTGELTVSDVERIL+AK
Sbjct: 289 VEGSTEGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAK 348
Query: 334 TVTAASPMAPACGLSLGFVKYDLP 357
TV+AA PMAPA GL L V+Y+ P
Sbjct: 349 TVSAAKPMAPASGLYLARVRYEFP 372
>gi|449503291|ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
Length = 352
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/310 (70%), Positives = 249/310 (80%), Gaps = 1/310 (0%)
Query: 49 EVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
E M+ IQRYL+AVEYIGTRF GSQ+Q NCRTVVG LEEAF KFIGQPVS+ SSRTD
Sbjct: 39 ETMNPKPGIQRYLVAVEYIGTRFYGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRTD 98
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQS-EGDIMVTDVRCVPSD 167
AGVHA SNVCHVDVERISKRKPGEVLPPH+ VV +AVNHFLQ EGD+ V DVR VP+D
Sbjct: 99 AGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPND 158
Query: 168 FHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
FHAR++AQERTYFYR++SGPE LS FEKDRAWHV E L++ AMQEACKVLVG HDFSSFR
Sbjct: 159 FHARYKAQERTYFYRLVSGPEALSSFEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFR 218
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+GCQANSPIRTLDEL+V EV ST F + + ++ ++ FGIR+
Sbjct: 219 AAGCQANSPIRTLDELNVCEVASTPYFPTSMERKQRQGKEESEIEVPCSETCEVGFGIRR 278
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+HR + V ARARSFLYHQVRL+VGVLKAVG+G+LTV DV RIL+AK V++A PMAPACGL
Sbjct: 279 RHRCFVVTARARSFLYHQVRLMVGVLKAVGSGDLTVGDVGRILEAKNVSSARPMAPACGL 338
Query: 348 SLGFVKYDLP 357
LG VKYDLP
Sbjct: 339 YLGHVKYDLP 348
>gi|140053519|gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]
Length = 361
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/323 (68%), Positives = 255/323 (78%), Gaps = 19/323 (5%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
+++IQRYL+AVEYIGTRF G QKQL RTV GVLE+AF KF+GQPVS+ SSRTDAGVHA
Sbjct: 38 HRKIQRYLVAVEYIGTRFFGFQKQLTDRTVAGVLEDAFCKFVGQPVSVVCSSRTDAGVHA 97
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE-GDIMVTDVRCVPSDFHARF 172
SNVCHVD+ERISKRKPGEVL PH+ +VVRRAVNHFLQ E GD+ V DVRCVPSDFHAR+
Sbjct: 98 LSNVCHVDIERISKRKPGEVLQPHEPAVVRRAVNHFLQKENGDLAVIDVRCVPSDFHARY 157
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+AQERTYFYR+LSGPE LS FEKDRAWH+ EEL+L AMQEACKVLVG HDFSSFRASGCQ
Sbjct: 158 KAQERTYFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQEACKVLVGHHDFSSFRASGCQ 217
Query: 233 ANSPIRTLDELHVSEVVSTALFSSI-NQDSPV-----LSSIDNSSKLGMPNGGSNV---- 282
A SPIR+LDEL V EV + F S+ ++++P+ L ++S+ +P G S
Sbjct: 218 AKSPIRSLDELSVVEVTRSPYFPSVMDRENPINVTDDLHCFHSNSETVIPLGSSARIDEV 277
Query: 283 --------FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKT 334
FG R+ HR V ARAR+FLYHQVRL+VGVLK VGTG +TV+DVERIL AKT
Sbjct: 278 SASKEDVGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDVERILNAKT 337
Query: 335 VTAASPMAPACGLSLGFVKYDLP 357
VTA SPMAPACGL LG VKYDLP
Sbjct: 338 VTATSPMAPACGLYLGEVKYDLP 360
>gi|297849290|ref|XP_002892526.1| hypothetical protein ARALYDRAFT_471082 [Arabidopsis lyrata subsp.
lyrata]
gi|297338368|gb|EFH68785.1| hypothetical protein ARALYDRAFT_471082 [Arabidopsis lyrata subsp.
lyrata]
Length = 373
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/346 (64%), Positives = 262/346 (75%), Gaps = 21/346 (6%)
Query: 30 SVEEEEEYPEEVPETRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEE 89
S EEE E + + ++ ++ V N R+QRYL+A+EYIGTRFSGSQ+Q RTVVGVL++
Sbjct: 31 SDEEEAEEQQGLADSESMNPV---NPRVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQD 87
Query: 90 AFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHF 149
AFHKFIGQPV I SSRTDAGVHA SNVCHVDVERISKRKPGEVLPPH+ VV+RAVNHF
Sbjct: 88 AFHKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHF 147
Query: 150 LQ-SEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLR 208
LQ +GD+MV DVRCVPS++HAR++AQERTYFYR+L+G +PLS+ EKDR WHV EEL+ R
Sbjct: 148 LQRKDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLAGSDPLSILEKDRCWHVPEELNPR 207
Query: 209 AMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSI---------NQ 259
+MQEAC+VLVG HDFSSFRA+GCQA SP+R LDEL+++EV ST F SI N
Sbjct: 208 SMQEACRVLVGYHDFSSFRAAGCQAKSPMRYLDELNITEVPSTPYFPSITERAWSNLNNG 267
Query: 260 DSPVLSSIDNSSKLGMPNGGSNV--------FGIRKKHRSYEVIARARSFLYHQVRLIVG 311
D SS S G+ V FG R++HR Y V AR+R FLYHQVRLIVG
Sbjct: 268 DPLACSSQPKSETAGVTTNVGEVEGSTDGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVG 327
Query: 312 VLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
LK VGTGELTVSDVERIL+AKTV+AA PMAPA GL L VKY+ P
Sbjct: 328 ALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLARVKYEFP 373
>gi|357445297|ref|XP_003592926.1| tRNA pseudouridine synthase A [Medicago truncatula]
gi|355481974|gb|AES63177.1| tRNA pseudouridine synthase A [Medicago truncatula]
Length = 375
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/337 (65%), Positives = 255/337 (75%), Gaps = 33/337 (9%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
+++IQRYL+AVEYIGTRF G QKQL RTV GVLE+AF KF+GQPVS+ SSRTDAGVHA
Sbjct: 38 HRKIQRYLVAVEYIGTRFFGFQKQLTDRTVAGVLEDAFCKFVGQPVSVVCSSRTDAGVHA 97
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE-GDIMVTDVRCVPSDFHARF 172
SNVCHVD+ERISKRKPGEVL PH+ +VVRRAVNHFLQ E GD+ V DVRCVPSDFHAR+
Sbjct: 98 LSNVCHVDIERISKRKPGEVLQPHEPAVVRRAVNHFLQKENGDLAVIDVRCVPSDFHARY 157
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRA--------------MQEACKVLV 218
+AQERTYFYR+LSGPE LS FEKDRAWH+ EEL+L A MQEACKVLV
Sbjct: 158 KAQERTYFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQTYHMRCESLMISMQEACKVLV 217
Query: 219 GCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSI-NQDSPV-----LSSIDNSSK 272
G HDFSSFRASGCQA SPIR+LDEL V EV + F S+ ++++P+ L ++S+
Sbjct: 218 GHHDFSSFRASGCQAKSPIRSLDELSVVEVTRSPYFPSVMDRENPINVTDDLHCFHSNSE 277
Query: 273 LGMPNGGSNV------------FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGE 320
+P G S FG R+ HR V ARAR+FLYHQVRL+VGVLK VGTG
Sbjct: 278 TVIPLGSSARIDEVSASKEDVGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGN 337
Query: 321 LTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
+TV+DVERIL AKTVTA SPMAPACGL LG VKYDLP
Sbjct: 338 ITVTDVERILNAKTVTATSPMAPACGLYLGEVKYDLP 374
>gi|115487730|ref|NP_001066352.1| Os12g0194800 [Oryza sativa Japonica Group]
gi|108862288|gb|ABA96079.2| tRNA pseudouridine synthase family protein, putative, expressed
[Oryza sativa Japonica Group]
gi|113648859|dbj|BAF29371.1| Os12g0194800 [Oryza sativa Japonica Group]
gi|215678805|dbj|BAG95242.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222616774|gb|EEE52906.1| hypothetical protein OsJ_35509 [Oryza sativa Japonica Group]
Length = 391
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/338 (64%), Positives = 255/338 (75%), Gaps = 22/338 (6%)
Query: 40 EVPETRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPV 99
EV R+ + N + QRYL+AVEY+GTRFSGSQ+QLN RTVVGVLEEAFHKFIGQPV
Sbjct: 53 EVAGVRSGEMAGARNPQAQRYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPV 112
Query: 100 SISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ-SEGDIMV 158
SI SSRTD GVHA SNVCHVDVERISKRKPGE+LPPH+ VV+RAVNHFLQ +EGDIMV
Sbjct: 113 SIFCSSRTDTGVHALSNVCHVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMV 172
Query: 159 TDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLV 218
TDVRCV DFHAR++A ERTY YR+LSG EPLSVFEK AWH+ E+L+++AM++AC +LV
Sbjct: 173 TDVRCVAPDFHARYKALERTYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILV 232
Query: 219 GCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDN------SSK 272
G HDFSSFRA+GCQANSP+RTLDEL V+EV + F S + S + S+D +S
Sbjct: 233 GHHDFSSFRATGCQANSPMRTLDELSVTEVFPSMFFPSSMERSE-MESLDGHLVYSRTSV 291
Query: 273 LGMPNGGSNV--------------FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGT 318
+ GS+ FG R +HR + V ARARSFLYHQVRL+VG+LK+VGT
Sbjct: 292 VESSGKGSDASSTSEQSRFENGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGT 351
Query: 319 GELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
G+LT DVERIL K VTAA PMAPACGL L VKYDL
Sbjct: 352 GDLTTEDVERILNLKAVTAAPPMAPACGLYLANVKYDL 389
>gi|218186563|gb|EEC68990.1| hypothetical protein OsI_37759 [Oryza sativa Indica Group]
Length = 391
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/338 (64%), Positives = 255/338 (75%), Gaps = 22/338 (6%)
Query: 40 EVPETRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPV 99
EV R+ + N + QRYL+AVEY+GTRFSGSQ+QLN RTVVGVLEEAFHKFIGQPV
Sbjct: 53 EVAGVRSGEMAGARNPQAQRYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPV 112
Query: 100 SISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ-SEGDIMV 158
SI SSRTD GVHA SNVCHVDVERISKRKPGE+LPPH+ VV+RAVNHFLQ +EGDIMV
Sbjct: 113 SIFCSSRTDTGVHALSNVCHVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMV 172
Query: 159 TDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLV 218
TDVRCV DFHAR++A ERTY YR+LSG EPLSVFEK AWH+ E+L+++AM++AC +LV
Sbjct: 173 TDVRCVAPDFHARYKALERTYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILV 232
Query: 219 GCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDN------SSK 272
G HDFSSFRA+GCQANSP+RTLDEL V+EV + F S + S + S+D +S
Sbjct: 233 GHHDFSSFRATGCQANSPMRTLDELSVTEVFPSMFFPSSMERSE-MESLDGHLVYSRTSV 291
Query: 273 LGMPNGGSNV--------------FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGT 318
+ GS+ FG R +HR + V ARARSFLYHQVRL+VG+LK+VGT
Sbjct: 292 VESSGKGSDASSTSEQSRFENGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGT 351
Query: 319 GELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
G+LT DVERIL K VTAA PMAPACGL L VKYDL
Sbjct: 352 GDLTTEDVERILNLKAVTAAPPMAPACGLYLANVKYDL 389
>gi|242083078|ref|XP_002441964.1| hypothetical protein SORBIDRAFT_08g005650 [Sorghum bicolor]
gi|241942657|gb|EES15802.1| hypothetical protein SORBIDRAFT_08g005650 [Sorghum bicolor]
Length = 387
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/344 (64%), Positives = 258/344 (75%), Gaps = 27/344 (7%)
Query: 38 PEEVPETRTVTEVMST--NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI 95
P ET +EVM+ N R QRYL+AVEYIGTRFSGSQ+Q N RTVVGVLEEAFH+FI
Sbjct: 44 PNGGAETGEESEVMAGARNPRAQRYLVAVEYIGTRFSGSQQQPNQRTVVGVLEEAFHRFI 103
Query: 96 GQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHF-LQSEG 154
GQPVSI SSRTDAGVHA SNVCHVDVERISKRKPGEVL PH+ VV+RAVNHF L++EG
Sbjct: 104 GQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLTPHEPGVVKRAVNHFLLKNEG 163
Query: 155 DIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEAC 214
DIMVTDVRCV DFHAR++A ERTY YR+LSGPE SVFE + AWH++E+LD++AM++AC
Sbjct: 164 DIMVTDVRCVAPDFHARYKALERTYHYRLLSGPESTSVFETNSAWHISEDLDIQAMKKAC 223
Query: 215 KVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSS-------- 266
+LVG HDFSSFRA+GCQANSP+RTLDEL V+EV F S + S + SS
Sbjct: 224 SILVGHHDFSSFRAAGCQANSPMRTLDELSVTEVFPFMFFPSSVERSQLESSNGSLVYSR 283
Query: 267 ---IDNSSKLG-----------MPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGV 312
I++S K + NG FG R +HR + V ARARSFLYHQVRL+VG+
Sbjct: 284 TPDIESSGKGSDLCCTSSVKSELENGED--FGKRSRHRCFVVTARARSFLYHQVRLMVGL 341
Query: 313 LKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
LK+VGTG+LT +DVERIL AKTVTAA MAPA GL L VKYDL
Sbjct: 342 LKSVGTGDLTTADVERILDAKTVTAAPRMAPAYGLYLANVKYDL 385
>gi|226496511|ref|NP_001146958.1| pseudouridylate synthase [Zea mays]
gi|195605848|gb|ACG24754.1| pseudouridylate synthase [Zea mays]
Length = 386
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/324 (65%), Positives = 248/324 (76%), Gaps = 21/324 (6%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
N R QRYL+AVEYIGTRFSGSQKQ N RTV GVLEEAFH+FIGQPVSI SSRTDAGVHA
Sbjct: 61 NPRAQRYLVAVEYIGTRFSGSQKQPNQRTVTGVLEEAFHRFIGQPVSIIFSSRTDAGVHA 120
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHF-LQSEGDIMVTDVRCVPSDFHARF 172
SNVCHVDVERISKRKPGEVL PH+ VV+RAVNHF L+SEGDIMVTDV CV DFHAR+
Sbjct: 121 LSNVCHVDVERISKRKPGEVLTPHEPGVVKRAVNHFLLKSEGDIMVTDVCCVAPDFHARY 180
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
++ ERTY YR+L+GPE SVFEK+ WH++E+LD+++M++AC +LVG HDFSSFRA+GCQ
Sbjct: 181 KSLERTYHYRLLAGPESTSVFEKNSVWHISEDLDIQSMKKACSILVGHHDFSSFRAAGCQ 240
Query: 233 ANSPIRTLDELHVSEVVSTALF-SSINQDSPVLSSID--NSSKLGMPNGGSNV------- 282
ANSP+RTLDEL V+EV F SS+ + LS++ S K M + G
Sbjct: 241 ANSPVRTLDELSVTEVFPFMFFPSSVERSELELSNVSLVYSRKPDMESSGKGSDGSCTSS 300
Query: 283 ----------FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKA 332
FG R +HR + V ARARSFLYHQVRL+VG+LK+VGTG+LT +DVERIL A
Sbjct: 301 VKSDFENGKDFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDA 360
Query: 333 KTVTAASPMAPACGLSLGFVKYDL 356
KTVTAA MAP+CGL L VKYDL
Sbjct: 361 KTVTAAPSMAPSCGLYLANVKYDL 384
>gi|357160554|ref|XP_003578802.1| PREDICTED: tRNA pseudouridine synthase A-like [Brachypodium
distachyon]
Length = 386
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/344 (63%), Positives = 254/344 (73%), Gaps = 23/344 (6%)
Query: 36 EYPEEVPETRTVTEVMSTNK--RIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHK 93
E PE V +E M+ + R QRYL+AVEY GTRF GSQ+Q + RTVVGVLEEAFHK
Sbjct: 41 EKPEGVGAAGPESEAMAAARVPRGQRYLVAVEYAGTRFCGSQQQPDQRTVVGVLEEAFHK 100
Query: 94 FIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ-S 152
F+GQPVS+ SSRTDAGVHA SNVCHVDVERISKRKPGEVLPPHD VV+RAVNHFLQ +
Sbjct: 101 FVGQPVSVFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHDPGVVKRAVNHFLQKN 160
Query: 153 EGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQE 212
EGDIMVTDVRCVP DFHAR++A ERTY YRILSGPE SVFEK+ AWH+ E+L+++AM++
Sbjct: 161 EGDIMVTDVRCVPPDFHARYKALERTYHYRILSGPERQSVFEKNSAWHIPEDLNIQAMKK 220
Query: 213 ACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSS---------------I 257
AC +LVG HDFSSFRA+GCQA SP+RTLDEL V+EV F S
Sbjct: 221 ACDLLVGHHDFSSFRATGCQAKSPVRTLDELTVTEVFPFMFFPSSVERSEMESPDGSLVY 280
Query: 258 NQDSPVLSSIDNSSKLGMPNGGS-----NVFGIRKKHRSYEVIARARSFLYHQVRLIVGV 312
++ S + +S + S +G S FG R +HR + V ARARSFLYHQVRL+VG+
Sbjct: 281 SRTSLMRASAEGSDAPSTASGKSVSENGQEFGKRLRHRCFVVTARARSFLYHQVRLMVGL 340
Query: 313 LKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
LK+VG G+LT +DVERIL AK VTAA PMAPA GL L VKYDL
Sbjct: 341 LKSVGIGDLTTADVERILDAKAVTAAPPMAPASGLYLANVKYDL 384
>gi|294464718|gb|ADE77866.1| unknown [Picea sitchensis]
Length = 382
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 216/355 (60%), Positives = 250/355 (70%), Gaps = 42/355 (11%)
Query: 48 TEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRT 107
E MS +QRYL+AV+YIGT F+G QKQ N RTV GVLE+AF+KFIGQPVS + SSRT
Sbjct: 19 NEDMSQWPGVQRYLVAVDYIGTNFAGMQKQPNFRTVQGVLEDAFNKFIGQPVSSASSSRT 78
Query: 108 DAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE-GDIMVTDVRCVPS 166
DAGVHA +NVCHVDVERISKRKPGEVLPPH+ VV+RAVNHFLQ + GDI + DVR VP
Sbjct: 79 DAGVHALTNVCHVDVERISKRKPGEVLPPHEPEVVKRAVNHFLQKDAGDISIIDVRFVPM 138
Query: 167 DFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSF 226
FHAR+RAQERTY+YRILSG EPLS+FEKDRAWHV E+L L MQEACKVLVG HDFSSF
Sbjct: 139 TFHARYRAQERTYYYRILSGKEPLSIFEKDRAWHVPEDLGLSCMQEACKVLVGHHDFSSF 198
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFS-SINQDSPV--------------LSSIDNSS 271
RASGCQA SPI+ LDEL V E+ + F SI++ S V +S DN
Sbjct: 199 RASGCQAKSPIKILDELRVCEMPAWPAFPMSIDRTSRVNISATSCKHVSSEGKASFDNPV 258
Query: 272 KL--------------GMPN----------GGSNV--FGIRKKHRSYEVIARARSFLYHQ 305
++ G P+ G V FG R+ HR Y V+ARA+SFLYHQ
Sbjct: 259 EMEGQVSLSKERFMNHGQPDMLCQEENGNFGQDEVLEFGHRRGHRGYVVVARAQSFLYHQ 318
Query: 306 VRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPEDD 360
VRL+VG LK VGTG+L+V DVE ILKA+T+T A PMAPACGL L VKYD +D
Sbjct: 319 VRLLVGTLKCVGTGKLSVDDVESILKARTITVAPPMAPACGLYLAAVKYDFSCND 373
>gi|449435142|ref|XP_004135354.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
Length = 350
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/312 (62%), Positives = 236/312 (75%), Gaps = 7/312 (2%)
Query: 49 EVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
E M+ IQRYL+AVEYIGTRF GSQ+Q NCRTVVG LEEAF KFIGQPVS+ SSRT
Sbjct: 39 ETMNPKPGIQRYLVAVEYIGTRFYGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRTV 98
Query: 109 AGVHAASNVCH--VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQS-EGDIMVTDVRCVP 165
+ + S++CH ++ ++ + LPPH+ VV +AVNHFLQ EGD+ V DVR VP
Sbjct: 99 SFLKKWSSLCHRNANIFFLTMMQ----LPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVP 154
Query: 166 SDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSS 225
+DFHAR++AQERTYFYR++SGPE LS FEKDRAWHV E L++ AMQEACKVLVG HDFSS
Sbjct: 155 NDFHARYKAQERTYFYRLVSGPEALSSFEKDRAWHVPETLNIGAMQEACKVLVGHHDFSS 214
Query: 226 FRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGI 285
FRA+GCQANSPIRTLDEL+V EV ST F + + ++ ++ FGI
Sbjct: 215 FRAAGCQANSPIRTLDELNVCEVASTPYFPTSMERKQRQGKEESEIEVPCSETCEVGFGI 274
Query: 286 RKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPAC 345
R++HR + V ARARSFLYHQVRL+VGVLKAVG+G+LTV DV RIL+AK V++A PMAPAC
Sbjct: 275 RRRHRCFVVTARARSFLYHQVRLMVGVLKAVGSGDLTVGDVGRILEAKNVSSARPMAPAC 334
Query: 346 GLSLGFVKYDLP 357
GL LG VKYDLP
Sbjct: 335 GLYLGHVKYDLP 346
>gi|168028382|ref|XP_001766707.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682139|gb|EDQ68560.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 331
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/319 (61%), Positives = 234/319 (73%), Gaps = 14/319 (4%)
Query: 52 STNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGV 111
S +QRYLI VEYIGTRF G Q+Q RTV G LE AF KFIGQPV ++SSRTD GV
Sbjct: 4 SAKAGVQRYLITVEYIGTRFLGFQRQKGKRTVQGCLESAFEKFIGQPVISAVSSRTDTGV 63
Query: 112 HAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE---GDIMVTDVRCVPSDF 168
HA +N CHVDVER SKRKPGEV+PPH+ VV+ A+NHFL ++ GD+ V V+CV DF
Sbjct: 64 HALANTCHVDVERKSKRKPGEVMPPHEPRVVQTAINHFLHAQKDAGDMAVVGVQCVSPDF 123
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HAR+RAQERTY YR+L+G +SVF+KD+AWHV+EEL+L +M EACKVLVG HDFSSFRA
Sbjct: 124 HARYRAQERTYHYRVLTGNRQMSVFQKDQAWHVSEELNLTSMMEACKVLVGHHDFSSFRA 183
Query: 229 SGCQANSPIRTLDELHVSEVVSTALF--------SSINQDSPVLSSIDNSSKLGMPNGGS 280
+GCQANSPIRTLDELHV E+ + F SS N ++ L S +S+L P S
Sbjct: 184 TGCQANSPIRTLDELHVCEMPAWPCFPSPEERQQSSQNAETKDLES--TTSELKDPILTS 241
Query: 281 NVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASP 340
+ G +K R + + ARARSFLYHQVRL+VG LKAVG G+LTV DV+RIL A+T+T A
Sbjct: 242 KL-GTSEKLRCFVITARARSFLYHQVRLMVGTLKAVGCGDLTVQDVQRILDARTITQAPA 300
Query: 341 MAPACGLSLGFVKYDLPED 359
MAPACGL L VKYD +D
Sbjct: 301 MAPACGLYLANVKYDFSDD 319
>gi|414878384|tpg|DAA55515.1| TPA: hypothetical protein ZEAMMB73_032156 [Zea mays]
Length = 443
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 214/432 (49%), Positives = 259/432 (59%), Gaps = 95/432 (21%)
Query: 5 AKRISECSEQASKIPEEKEEDHQNDSVEEEEEYPEEVPETRTVTEVMST--NKRIQRYLI 62
+ ++ CSE + P K N EE +E+M+ N R QRYL+
Sbjct: 25 SAKLQRCSEPSEPTPAGKP----NGGAATGEE-----------SEMMAGARNPRAQRYLV 69
Query: 63 AVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRT--------------- 107
AVEYIGTRFSGSQKQ N RTV GVLEEAFH+FIGQPVSI SSRT
Sbjct: 70 AVEYIGTRFSGSQKQPNQRTVTGVLEEAFHRFIGQPVSIIFSSRTSGMILADSSKVCMRY 129
Query: 108 ----------------------DAGVHAASNVCHVDVERISKRKPGE------------- 132
DAGVHA SNVCHVDVERI+
Sbjct: 130 CIFKTIANIQMLKGSGYLILVLDAGVHALSNVCHVDVERINLAAGATAETSRCSLGVWID 189
Query: 133 -------VLPPHDSSVVRRAVNHFL-QSEGDIMVTDVRCVPSDFHARFRAQERTYFYRIL 184
+L PH+ VV+RAVNHFL +SEGDIMVTDV CV DFHAR+++ ERTY YR+L
Sbjct: 190 VFWWESCLLTPHEPGVVKRAVNHFLLKSEGDIMVTDVCCVAPDFHARYKSLERTYHYRLL 249
Query: 185 SGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELH 244
+GPE SVFEK+ WH++E+LD+++M++AC +LVG HDFSSFRA+GCQANSP+RTLDEL
Sbjct: 250 AGPESTSVFEKNSVWHISEDLDIQSMKKACSILVGHHDFSSFRAAGCQANSPVRTLDELS 309
Query: 245 VSEVVSTALF-SSINQDSPVLSSID--NSSKLGMPNGGSNV-----------------FG 284
V+EV F SS+ + LS++ S K M + G FG
Sbjct: 310 VTEVFPFMFFPSSVERSELELSNVSLVYSRKPDMESSGKGSDGSCTSSVKSDFENGKDFG 369
Query: 285 IRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPA 344
R +HR + V ARARSFLYHQVRL+VG+LK+VGTG+LT +DVERIL AKTVTAA MAP+
Sbjct: 370 KRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPSMAPS 429
Query: 345 CGLSLGFVKYDL 356
CGL L VKYDL
Sbjct: 430 CGLYLANVKYDL 441
>gi|302770785|ref|XP_002968811.1| hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii]
gi|300163316|gb|EFJ29927.1| hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii]
Length = 300
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 175/301 (58%), Positives = 213/301 (70%), Gaps = 21/301 (6%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
IQRYL+ +EYIGTRFSG Q+Q RTV G LE+AF F+GQ VS + SSRTDAGVHA N
Sbjct: 6 IQRYLVGIEYIGTRFSGWQRQGGVRTVQGTLEDAFSSFMGQSVSTTGSSRTDAGVHALRN 65
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE-GDIMVTDVRCVPSDFHARFRAQ 175
V HVD+ R SKRKPGE+L PH V+ RAVNHFLQ E D+ V D R VP DFHARFRA+
Sbjct: 66 VFHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPDFHARFRAK 125
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
ERTY+YRIL+G S+FE+DRAWHV E L+L AMQ AC+VL+G HDFSSFRASGCQA S
Sbjct: 126 ERTYYYRILAGSCRASLFERDRAWHVEEPLNLIAMQSACQVLLGTHDFSSFRASGCQAAS 185
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PI+TL+EL + E VS F L+ ++++ P+ +SY V
Sbjct: 186 PIKTLEELSIRETVSWPHF---------LTGCSSNAQSSNPD-----------LKSYVVT 225
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARA+SFLYHQVRL+VG LK VG G+ TV DV +IL+ ++++ A PMAPA GL L VKYD
Sbjct: 226 ARAQSFLYHQVRLMVGTLKGVGAGKRTVEDVRKILEGRSISLALPMAPASGLFLADVKYD 285
Query: 356 L 356
+
Sbjct: 286 M 286
>gi|302784784|ref|XP_002974164.1| hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii]
gi|300158496|gb|EFJ25119.1| hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii]
Length = 321
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 172/301 (57%), Positives = 212/301 (70%), Gaps = 21/301 (6%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
IQRYL+ +EYIGTRFSG Q+Q RTV G LE+AF F+GQ VS + SSRTDAGVHA N
Sbjct: 27 IQRYLVGIEYIGTRFSGWQRQEGVRTVQGTLEDAFSSFMGQSVSTTGSSRTDAGVHALRN 86
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE-GDIMVTDVRCVPSDFHARFRAQ 175
V HVD+ R SKRKPGE+L PH V+ RAVNHFLQ E D+ V D R VP DFHARFRA+
Sbjct: 87 VFHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPDFHARFRAK 146
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
ERTY+YRIL+G S+FE+DRAWHV E L+L AMQ AC+VL+G HDFSSFRASGCQA S
Sbjct: 147 ERTYYYRILAGSCRASLFERDRAWHVEEPLNLIAMQSACQVLLGTHDFSSFRASGCQAAS 206
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P++TL+EL + E VS +L+ ++++ P+ +SY V
Sbjct: 207 PVKTLEELSIRETVSW---------PHLLTGCSSNAQSSNPD-----------LKSYVVT 246
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARA+SFLYHQVRL+VG LK VG G+ T DV +IL+ ++++ A PMAPA GL L VKYD
Sbjct: 247 ARAQSFLYHQVRLMVGTLKGVGAGKRTAEDVRKILEGRSISLALPMAPASGLFLADVKYD 306
Query: 356 L 356
+
Sbjct: 307 M 307
>gi|2160170|gb|AAB60733.1| F21M12.19 gene product [Arabidopsis thaliana]
Length = 250
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/226 (57%), Positives = 155/226 (68%), Gaps = 46/226 (20%)
Query: 32 EEEEEYPEEVPETRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAF 91
+EE E + + + ++ V N R+QRYL+A+EYIGTRFSGSQ+Q RTVVGVL+
Sbjct: 32 DEESEEQQGLADLESMNPV---NPRVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQ--- 85
Query: 92 HKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ 151
DAGVHA SNVCHVDVERISKRKPGEVLPPH+ VV+RAVNHFLQ
Sbjct: 86 ----------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQ 129
Query: 152 -SEGDIMVTDVRCVPSDFHARFRAQERT-----------------------YFYRILSGP 187
+GD+MV DVRCVPS++HAR++AQERT YFYR+LSG
Sbjct: 130 RKDGDVMVIDVRCVPSNYHARYKAQERTVLGYDLKVYSLQLEIENLFTHCRYFYRLLSGS 189
Query: 188 EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+PLS+ EKDR WHV EEL+LR MQEAC+VLVG HDFSSFRA+GCQ
Sbjct: 190 DPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQV 235
>gi|223945645|gb|ACN26906.1| unknown [Zea mays]
Length = 222
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 125/220 (56%), Positives = 156/220 (70%), Gaps = 20/220 (9%)
Query: 157 MVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKV 216
MVTDV CV DFHAR+++ ERTY YR+L+GPE SVFEK+ WH++E+LD+++M++AC +
Sbjct: 1 MVTDVCCVAPDFHARYKSLERTYHYRLLAGPESTSVFEKNSVWHISEDLDIQSMKKACSI 60
Query: 217 LVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALF-SSINQDSPVLSSID--NSSKL 273
LVG HDFSSFRA+GCQANSP+RTLDEL V+EV F SS+ + LS++ S K
Sbjct: 61 LVGHHDFSSFRAAGCQANSPVRTLDELSVTEVFPFMFFPSSVERSELELSNVSLVYSRKP 120
Query: 274 GMPNGGSNV-----------------FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAV 316
M + G FG R +HR + V ARARSFLYHQVRL+VG+LK+V
Sbjct: 121 DMESSGKGSDGSCTSSVKSDFENGKDFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSV 180
Query: 317 GTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
GTG+LT +DVERIL AKTVTAA MAP+CGL L VKYDL
Sbjct: 181 GTGDLTTADVERILDAKTVTAAPSMAPSCGLYLANVKYDL 220
>gi|255086349|ref|XP_002509141.1| predicted protein [Micromonas sp. RCC299]
gi|226524419|gb|ACO70399.1| predicted protein [Micromonas sp. RCC299]
Length = 452
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 145/386 (37%), Positives = 185/386 (47%), Gaps = 82/386 (21%)
Query: 48 TEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF------------- 94
+ +M + RYL+ V+Y GT F G Q+Q N RTV G +E+A F
Sbjct: 53 SSIMGATRAAPRYLLRVQYDGTNFHGFQRQANARTVQGCVEDALDAFAGGGGGGGGGGGG 112
Query: 95 -----IGQPVSISLSSRTDAGVHAASNVCHVDVE-RISKRKPGEVLPPHDSSVVRRAVNH 148
+ + SSRTDAGVHA N HVD+ R+S+R+P LPPH+ VV A+NH
Sbjct: 113 DGADTMRSSIVTHGSSRTDAGVHALDNTMHVDLPPRVSRREPTRALPPHEPHVVASALNH 172
Query: 149 FLQSEGDIMVTDVRCV---PSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTE-- 203
FL+ G V RC+ P+ FHARF A RTY YR+ P P S+FE+ R WHV
Sbjct: 173 FLKKRGAPDVAVTRCIRVDPNAFHARFSATGRTYHYRMHVSPTPPSLFERGRVWHVCSGA 232
Query: 204 -----------------------ELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
LD+ AM+ A LVG HDFS+FRASGCQA+SP+RTL
Sbjct: 233 GDRDAAGGGADGCHENAGHDGRWGLDVDAMRVAAAHLVGTHDFSTFRASGCQASSPVRTL 292
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSI--DNSSKL-----------------------GM 275
++ V S F + SP S D+ SK+ G
Sbjct: 293 WDVRVDAAPSWPPFPA----SPATDSTKPDDFSKVEVTEKPDEARRRSRGKDRARAPRGR 348
Query: 276 PNGGSNVFGIRKK------HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERI 329
+ G+ G V A SFLYHQVRL+V L+AVG GE+ + V +
Sbjct: 349 ADLGAATTGFDPATSRPLTSGGVVVTAVGPSFLYHQVRLMVATLRAVGAGEIDPASVPAL 408
Query: 330 LKAKTVTAASPMAPACGLSLGFVKYD 355
L A+T A MAPA GL LG V YD
Sbjct: 409 LAARTPRAVPAMAPAHGLYLGRVHYD 434
>gi|145352156|ref|XP_001420422.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580656|gb|ABO98715.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 308
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 168/323 (52%), Gaps = 51/323 (15%)
Query: 51 MSTNKRIQ----RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISL-- 103
M +KRI RYL +EY G RF G Q+Q TV G L+EA F G +I
Sbjct: 1 MVASKRIAAAVPRYLAFLEYDGARFRGFQRQCGVAATVQGALDEALTAFTGARGAIECVG 60
Query: 104 SSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVR 162
SSRTD GVHA N H D R +K G + PHD + VRR VN+ L+ G + VT+
Sbjct: 61 SSRTDVGVHALRNSAHFDFARTTK--DGTTVEPHDGASVRRGVNYHLRKLGAAVRVTE-- 116
Query: 163 CVPSD-----FHARFRAQERTYFYRILSG--PEPLSVFEKDRAWHVTEELDLR----AMQ 211
CV D FHAR A R Y Y IL G + S+F+ +RAW+V D R AM+
Sbjct: 117 CVRVDEMNPKFHARHDAVARRYRYDILVGERDDGGSLFDAERAWYVRATCDGRLNVDAMR 176
Query: 212 EACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSS 271
+A L G HDFSSFRA+GCQA+SP+RTL + V E ++ + P +
Sbjct: 177 DAAAALTGTHDFSSFRANGCQASSPVRTLTSIDVKEELT---------EWPAAEARGTKQ 227
Query: 272 KLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILK 331
K+ + A SFLYHQVRL+ G LKAVG +LTV DV+ +L+
Sbjct: 228 KI-------------------SIAVAAPSFLYHQVRLLAGALKAVGANDLTVKDVQELLE 268
Query: 332 AKTVTAASPMAPACGLSLGFVKY 354
AK V A MAPA GL L V Y
Sbjct: 269 AKDVARAPQMAPAHGLYLADVAY 291
>gi|303284649|ref|XP_003061615.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456945|gb|EEH54245.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 390
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 179/347 (51%), Gaps = 49/347 (14%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPV---SISLSSRTDAGVHA 113
RYL+ ++Y G F G Q+Q N RTV G +EEA KF G +I+ SSRTDAGVHA
Sbjct: 5 FARYLLRIQYDGGAFHGFQRQANARTVQGCVEEAMAKFTGVEGGVHAITGSSRTDAGVHA 64
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDI--MVTDVRCVPSDFHAR 171
HVD++ PPH + V +AVNH+L+ + + + R P FHAR
Sbjct: 65 LDATAHVDIDDGDAGDA-PPPPPHSARTVMKAVNHYLRKTAPMASIASCARVCPETFHAR 123
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEE---------------------LDLRAM 210
+ A RTY Y I G + SVF++ +AWHV + LD+ AM
Sbjct: 124 YCATARTYRYLIYLGRDEPSVFDRGKAWHVYDGRNASGAGVNTHEPSGGCALGGLDVDAM 183
Query: 211 QEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSI-NQDSPVLSSI-- 267
A + VG HDFS+FRA+GCQA+SPIR L L V + F SI +QDS V+ S
Sbjct: 184 NAAARRFVGEHDFSAFRANGCQASSPIRRLHVLRVDRAMPWPSFPSIASQDSMVMHSFDV 243
Query: 268 ------DNSSKLGMPNGGSN------------VFGIRKKHRSYEVIARARSFLYHQVRLI 309
D+ S++ +P + R + ARA SFLYHQVRL+
Sbjct: 244 AKPMEEDDLSEVLVPEAETEGKKEKTPPPPRKPPSGRVTSGHIVITARAPSFLYHQVRLM 303
Query: 310 VGVLKAVGTGELTVSDVERILKAKT-VTAASPMAPACGLSLGFVKYD 355
VG L+AVG GEL+ DV +L+ T + A PMAPA GL L V YD
Sbjct: 304 VGTLRAVGAGELSPDDVTDLLEGTTDASRAPPMAPAHGLYLERVHYD 350
>gi|359409468|ref|ZP_09201936.1| pseudouridylate synthase I [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356676221|gb|EHI48574.1| pseudouridylate synthase I [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 257
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 154/303 (50%), Gaps = 53/303 (17%)
Query: 52 STNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGV 111
+ N I+R LI +EY GT G Q+Q N +V G LE+A K P + S RTDAGV
Sbjct: 5 AVNTSIKRMLIRIEYDGTDLVGWQRQDNGPSVQGYLEQAAEKLTTHPTLVQGSGRTDAGV 64
Query: 112 HAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHAR 171
HA H+DV PG + + V R +N +L++ + V + V DFHAR
Sbjct: 65 HATGQAAHLDV-------PGHL----SETAVVRGLNAWLETP-QVAVLSAQQVADDFHAR 112
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
F A +R Y YR++S P S +++AWH +LD+ AM +A + L+G +DFSSFRA+GC
Sbjct: 113 FDAVQRAYLYRLISRDTP-SALRRNQAWHHRAKLDVEAMHKAAQSLIGRYDFSSFRAAGC 171
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
QANSP+RT+DE+ V R
Sbjct: 172 QANSPLRTMDEMSV----------------------------------------RCSGDE 191
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
+ ARARSFLYHQ+R I G L VG G+ ++ + RI AK A P APA GL L
Sbjct: 192 IHITARARSFLYHQIRNITGSLVQVGIGKWSIDEFVRIRDAKDRRQAGPTAPAYGLYLTD 251
Query: 352 VKY 354
++Y
Sbjct: 252 IQY 254
>gi|452966646|gb|EME71655.1| pseudouridylate synthase [Magnetospirillum sp. SO-1]
Length = 256
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 159/306 (51%), Gaps = 54/306 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT F+G Q+Q +V GVLE+A K G P +I+ + RTDAGVHA
Sbjct: 1 MPRYRLLVEYDGTPFNGWQRQDKGLSVQGVLEKAVEKLCGTPCTINAAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ R + + VR A+N+ ++ + + V V DFHARF A
Sbjct: 61 VAHVDLPR-----------DYPADTVRDALNYHMKPK-PVAVVAAEKVGDDFHARFSAIG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL+ E+DRAW V LD +M E + L+G HDF++FRAS CQA SP
Sbjct: 109 RAYLYRIVNRRAPLA-LEQDRAWWVPVALDADSMAEGARRLLGHHDFTTFRASECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V+ V G + ++A
Sbjct: 168 MKTLDVLDVTRV------------------------------GEEI----------RIVA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG LK VG G+ + D+ R L A+ T P APA GL L V Y
Sbjct: 188 EARSFLHHQVRNMVGTLKLVGEGKWSPDDMGRALAARDRTKGGPTAPAAGLVLTGVTYP- 246
Query: 357 PEDDQT 362
P D++
Sbjct: 247 PSGDRS 252
>gi|406989097|gb|EKE08911.1| hypothetical protein ACD_16C00235G0007 [uncultured bacterium]
Length = 245
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 157/298 (52%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY GT FSG Q+Q + T+ +LE+AF F+ PV++ S RTDAGVHA
Sbjct: 1 MTRYKLTIEYDGTPFSGWQRQEDVPTIQEILEDAFCDFLKSPVTVWGSGRTDAGVHAKGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD +L +D+ ++ A+N LQ E I + V V SDFHARF A +
Sbjct: 61 VAHVD-----------ILKSYDTFAIQGAINKRLQ-EYPISLLKVEKVASDFHARFSATQ 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y+IL+ P S+ EK R W V L ++AM EA +L+G +DFSSFR S CQ+ SP
Sbjct: 109 RFYEYKILNRRAPTSL-EKKRVWWVVAPLCVKAMNEAAALLLGQYDFSSFRDSRCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L I KK V A
Sbjct: 168 LKTLDGL----------------------------------------TIEKKGEIILVKA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R+IVG LK +G G + +IL+AK AA P APA GL L +K+
Sbjct: 188 NARSFLHHQIRIIVGTLKRIGEGAWAPEKIIQILEAKDRKAAGPTAPAHGLYLTEIKF 245
>gi|23016535|ref|ZP_00056290.1| COG0101: Pseudouridylate synthase [Magnetospirillum magnetotacticum
MS-1]
Length = 256
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 155/298 (52%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT F+G Q+Q +V GVLE+A K G P +I+ + RTDAGVHA
Sbjct: 1 MPRYRLLVEYDGTPFNGWQRQDKGLSVQGVLEQAVEKLTGSPCTINAAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ R + + VR A+N+ ++ + + V V DFHARF A
Sbjct: 61 VAHVDLPR-----------DYPADTVRDALNYHMKPK-PVAVVAAELVGDDFHARFSAVG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRI++ PL++ ++ RAW V LD AM E + L+G HDF++FRAS CQA SP
Sbjct: 109 RSYLYRIVNRRAPLAL-DQHRAWWVPVSLDAEAMAEGARRLLGHHDFTTFRASECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V+ V G + +IA
Sbjct: 168 MKTLDVLDVTRV------------------------------GEEI----------RIIA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG LK VG G+ + D+ R L A T P APA GL L V Y
Sbjct: 188 EARSFLHHQVRNMVGTLKLVGEGKWSPDDMARALAACDRTKGGPTAPAAGLCLTGVSY 245
>gi|154247231|ref|YP_001418189.1| tRNA pseudouridine synthase A [Xanthobacter autotrophicus Py2]
gi|238686729|sp|A7IKI9.1|TRUA_XANP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|154161316|gb|ABS68532.1| tRNA pseudouridine synthase A [Xanthobacter autotrophicus Py2]
Length = 245
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 152/296 (51%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY GT ++G Q Q + +TV G L +AF +F G+ V ++ + RTDAGVHA V
Sbjct: 3 RYKLTIEYDGTPYAGWQIQADQQTVQGALAQAFKRFCGEDVHVAGAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD+ R + S VR A+ L+ I V VP F ARF A +R
Sbjct: 63 HVDLSRHWR-----------SDTVRDAMTAQLRPH-PIAVLSAEEVPDSFDARFSATKRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI++ P ++DRAW + ++LD +AM EA + L+G HDFS+FRA+ CQA SP++
Sbjct: 111 YLYRIIN-RRPDLALDRDRAWRIPQKLDAQAMHEAAQRLLGKHDFSTFRAAECQAASPLK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD+L VS G + VI A
Sbjct: 170 TLDQLDVS------------------------------RSGDEI----------RVITSA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+HQVR +VG L VG G + D+E LKA T PMAPA GL L V Y
Sbjct: 190 RSFLHHQVRSMVGSLMRVGEGRWSADDLEAALKAADRTRCGPMAPAAGLYLAAVSY 245
>gi|83309340|ref|YP_419604.1| pseudouridylate synthase [Magnetospirillum magneticum AMB-1]
gi|123768092|sp|Q2WAT0.1|TRUA_MAGSA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|82944181|dbj|BAE49045.1| Pseudouridylate synthase [Magnetospirillum magneticum AMB-1]
Length = 256
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 155/298 (52%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT F+G Q+Q +V G+LE+A K G P ++ + RTDAGVHA
Sbjct: 1 MPRYRLLVEYDGTPFNGWQRQDKGLSVQGILEKAVEKLCGVPCTLHAAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ R + + VR A+N+ ++ + + V V DFHARF A
Sbjct: 61 VAHVDLPR-----------DYPADTVRDALNYHMKPK-PVAVVAAELVDEDFHARFSAVG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL+ ++ RAW V LD AM E + L+G HDFS+FRAS CQA SP
Sbjct: 109 RAYLYRIVNRRAPLA-LDQHRAWWVPVALDAEAMAEGARRLLGHHDFSTFRASECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V+ V G + ++A
Sbjct: 168 MKTLDVLDVTRV------------------------------GEEI----------RIVA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG LK VG G+ + D+ ++L+A+ T P APA GL L V Y
Sbjct: 188 EARSFLHHQVRNMVGTLKLVGEGKWSPDDMAKVLEARDRTKGGPTAPAAGLVLTGVSY 245
>gi|379713036|ref|YP_005301375.1| tRNA pseudouridine synthase A [Rickettsia philipii str. 364D]
gi|376329681|gb|AFB26918.1| tRNA pseudouridine synthase A [Rickettsia philipii str. 364D]
Length = 245
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P+DFHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNDFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVSAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|374292875|ref|YP_005039910.1| tRNA pseudouridine synthase A [Azospirillum lipoferum 4B]
gi|357424814|emb|CBS87693.1| tRNA pseudouridine synthase A [Azospirillum lipoferum 4B]
Length = 245
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 149/298 (50%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QR+ + VEY G F G Q+Q N +V LEEA + G+ V + S RTDAGVHA
Sbjct: 1 MQRWKLTVEYDGRPFVGWQRQDNGPSVQQSLEEAVQRLSGEVVRVHGSGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
VCH D+E+ P +R A+N L+ I V +V V DFHAR +
Sbjct: 61 VCHFDLEK-----------PFTGLKLRDALNFHLKP-APIAVLEVEAVTGDFHARLTSTG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ + RAWHVT LD AM A +VLVG HDF+SFRA+ CQA SP
Sbjct: 109 RAYVYRIVNRRAPLAL-DAGRAWHVTRPLDAEAMHAAAQVLVGQHDFTSFRAALCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V ++ V A
Sbjct: 168 VKTLDRLDVE----------------------------------------RQGDEIRVHA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L+ VG G+ +V DV R L+A+ A P P GL +Y
Sbjct: 188 AARSFLHHQVRNMVGTLELVGAGKWSVDDVRRALEARDRAKAGPTCPPDGLYFKLARY 245
>gi|392381302|ref|YP_005030499.1| tRNA pseudouridine synthase A [Azospirillum brasilense Sp245]
gi|356876267|emb|CCC97030.1| tRNA pseudouridine synthase A [Azospirillum brasilense Sp245]
Length = 245
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 151/298 (50%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QR+ + +EY G F G Q+Q N +V LEEA + G+ V + S RTDAGVHA
Sbjct: 1 MQRWKLTLEYDGRPFVGWQRQDNGPSVQQTLEEAIERLSGETVRVHTSGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
VCH D+E+ P +R A+N L+ + V VP DFHAR
Sbjct: 61 VCHFDLEK-----------PFTGLKLRDALNFHLRP-APVAVLQAEAVPEDFHARMTCLG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y +RI++ PL++ E RAWHV LD AM A +VLVG HDF+SFRA+ CQANSP
Sbjct: 109 RSYVFRIVNRRAPLAL-ETGRAWHVMRPLDAEAMHVAAQVLVGQHDFTSFRAALCQANSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL+ L V V G V V A
Sbjct: 168 VKTLERLAVERV------------------------------GDEV----------RVHA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L+ VG G+ + D+ R L+A+ +AA P AP GL +Y
Sbjct: 188 AARSFLHHQVRNMVGTLELVGAGKWSADDLRRALEARNRSAAGPTAPPDGLYFVNARY 245
>gi|383311932|ref|YP_005364733.1| tRNA pseudouridine synthase A [Candidatus Rickettsia amblyommii
str. GAT-30V]
gi|378930592|gb|AFC69101.1| tRNA pseudouridine synthase A [Candidatus Rickettsia amblyommii
str. GAT-30V]
Length = 245
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 155/297 (52%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + AVN+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAVNYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG V ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQVEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|374319840|ref|YP_005066339.1| tRNA pseudouridine synthase A [Rickettsia slovaca 13-B]
gi|383751935|ref|YP_005427036.1| tRNA pseudouridine synthase A [Rickettsia slovaca str. D-CWPP]
gi|360042389|gb|AEV92771.1| tRNA pseudouridine synthase A [Rickettsia slovaca 13-B]
gi|379774949|gb|AFD20305.1| tRNA pseudouridine synthase A [Rickettsia slovaca str. D-CWPP]
Length = 245
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 155/297 (52%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + VP++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELVPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|341584472|ref|YP_004764963.1| tRNA pseudouridine synthase A [Rickettsia heilongjiangensis 054]
gi|340808697|gb|AEK75285.1| tRNA pseudouridine synthase A [Rickettsia heilongjiangensis 054]
Length = 245
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V VLEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQVLEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVSAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|308809101|ref|XP_003081860.1| COG0101: Pseudouridylate synthase (ISS) [Ostreococcus tauri]
gi|116060327|emb|CAL55663.1| COG0101: Pseudouridylate synthase (ISS) [Ostreococcus tauri]
Length = 338
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 172/345 (49%), Gaps = 70/345 (20%)
Query: 50 VMSTNKRIQRYLIAVEYIGTRFSGSQKQ-LNCR---TVVGVLEEAFHKFIGQPVSISL-- 103
V +K + RYL +EY G +F G Q+Q L R TV L+EA F G +++
Sbjct: 4 VRRASKALPRYLAFLEYDGAKFRGFQRQNLGERATTTVQDALDEALETFTGNRGAVASVG 63
Query: 104 SSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQS-EGDIMVTDVR 162
SSRTD GVHA N H D R+ K + +DS VRR +N+ L+S E + VT+
Sbjct: 64 SSRTDVGVHATRNSAHFDCGRVGKDGS---MDAYDSESVRRGLNYHLKSRERAMRVTE-- 118
Query: 163 CVPSD-----FHARFRAQERTYFYRILSGP--EPLSVFEKDRAWHV-------------- 201
CV D FHAR A R Y Y IL G + SVF++D AW++
Sbjct: 119 CVRVDTLNPTFHARHDAVSRRYRYEILVGDRDDGGSVFDRDGAWYLRAVVASDRGAKQTS 178
Query: 202 --------TEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTAL 253
LD+ AM+ A VL+G HDFSSFRASGCQA SPIRT+ L V
Sbjct: 179 SRRYTTCEATGLDVDAMRRAASVLIGKHDFSSFRASGCQAKSPIRTITSLDV-------- 230
Query: 254 FSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVL 313
+ +++ P R + V A SFLYHQVRL+VG L
Sbjct: 231 -------------VSRTTEWPSPEA-------RGTRQEVSVRVEAPSFLYHQVRLLVGAL 270
Query: 314 KAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPE 358
K+VG G+LTV DV +L+AK V+ A MAPA GL L V Y LP
Sbjct: 271 KSVGAGDLTVDDVRELLEAKDVSQAPQMAPAHGLYLMDVGY-LPN 314
>gi|157829158|ref|YP_001495400.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933887|ref|YP_001650676.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Iowa]
gi|378723312|ref|YP_005288198.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Arizona]
gi|378724667|ref|YP_005289551.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Hauke]
gi|379017116|ref|YP_005293351.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Brazil]
gi|379018452|ref|YP_005294687.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Hino]
gi|166228760|sp|A8GU17.1|TRUA_RICRS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189030139|sp|B0BVL0.1|TRUA_RICRO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157801639|gb|ABV76892.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908974|gb|ABY73270.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Iowa]
gi|376325640|gb|AFB22880.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Brazil]
gi|376328336|gb|AFB25574.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Arizona]
gi|376331018|gb|AFB28254.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Hino]
gi|376333682|gb|AFB30915.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Hauke]
Length = 245
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 155/297 (52%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + + RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGAGRTDAGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F++ + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFVRPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|239948364|ref|ZP_04700117.1| tRNA pseudouridine synthase A [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922640|gb|EER22664.1| tRNA pseudouridine synthase A [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 245
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 153/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G QKQ +V +LEEA +K G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTNLAGWQKQAGVMSVQQILEEAIYKLSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IIAAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RHYIYRIINRPYP-SVIDLNRAWWISSPLDILAMQKAASYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNVWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|383482775|ref|YP_005391689.1| tRNA pseudouridine synthase A [Rickettsia montanensis str. OSU
85-930]
gi|378935129|gb|AFC73630.1| tRNA pseudouridine synthase A [Rickettsia montanensis str. OSU
85-930]
Length = 245
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 152/298 (51%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDFSK--------YLEPHK---IITAINYFTRPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL V Y
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLYFVKVAY 245
>gi|395789109|ref|ZP_10468639.1| tRNA pseudouridine synthase A [Bartonella taylorii 8TBB]
gi|395431243|gb|EJF97270.1| tRNA pseudouridine synthase A [Bartonella taylorii 8TBB]
Length = 247
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 154/297 (51%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q + RT+ G LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQTDLRTIQGALEQAIFHFCGQQLTITTAGRTDAGVHATGQVV 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD E+ + +R A+N L+ +G DI + +V+ VP DF ARF A +R
Sbjct: 63 HVDFEKTWY-----------THTIRDALNAHLRKQGEDISILNVQNVPDDFDARFSAIKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRRSPPALNAK-RVWWLPKPLNAEAMHEAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVQR------------------------------EGDEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L AK T +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTTQDLEAALHAKDRTRCGVVAPPSGLYLTKVEY 247
>gi|379019765|ref|YP_005295999.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Hlp#2]
gi|376332345|gb|AFB29579.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Hlp#2]
Length = 245
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + + RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGAGRTDAGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|337265145|ref|YP_004609200.1| tRNA pseudouridine synthase A [Mesorhizobium opportunistum WSM2075]
gi|336025455|gb|AEH85106.1| tRNA pseudouridine synthase A [Mesorhizobium opportunistum WSM2075]
Length = 249
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 155/297 (52%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ F+G Q Q + +V +EEA KF G+ V + + RTDAGVHA + V
Sbjct: 3 RFRLDIEYDGSLFAGWQHQADQPSVQQAIEEAIEKFCGEAVRLRAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD + K PG+ VR AVN LQ+ G +++ VP DF ARF A R
Sbjct: 63 HVD---LVKAWPGDK--------VRDAVNAHLQAAGARVVILKAGVVPDDFDARFSATGR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRIL+ P S EK + W V + LD AM EA K+L+G HDF++FR++ CQANSP+
Sbjct: 112 HYLYRILNRRAP-SALEKGKVWWVPKRLDAGAMHEAAKILLGRHDFTTFRSTQCQANSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL++L VS ++ EV A
Sbjct: 171 RTLEQLDVS----------------------------------------RQGDMIEVRAS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL++QVR +VG LK VG G + +D + L+A+ A +AP GL L V Y
Sbjct: 191 ARSFLHNQVRSMVGSLKRVGDGSWSANDFKAALEARDRAACGQVAPPDGLFLIGVDY 247
>gi|15893251|ref|NP_360965.1| tRNA pseudouridine synthase A [Rickettsia conorii str. Malish 7]
gi|24212567|sp|Q92FZ9.1|TRUA_RICCN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|15620470|gb|AAL03866.1| pseudouridylate synthase I [Rickettsia conorii str. Malish 7]
Length = 245
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISAPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|383480936|ref|YP_005389851.1| tRNA pseudouridine synthase A [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933275|gb|AFC71778.1| tRNA pseudouridine synthase A [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 245
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVISVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQATAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|238651103|ref|YP_002916961.1| tRNA pseudouridine synthase A [Rickettsia peacockii str. Rustic]
gi|259550439|sp|C4K2W2.1|TRUA_RICPU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238625201|gb|ACR47907.1| tRNA pseudouridine synthase A [Rickettsia peacockii str. Rustic]
Length = 245
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPCP-SVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|395788202|ref|ZP_10467777.1| tRNA pseudouridine synthase A [Bartonella birtlesii LL-WM9]
gi|395409535|gb|EJF76123.1| tRNA pseudouridine synthase A [Bartonella birtlesii LL-WM9]
Length = 247
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 155/297 (52%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q + RT+ G LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQTDLRTIQGALEQAIFHFCGQQLTITTAGRTDAGVHAMGQVV 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD E+ + +R A+N L+ +G DI + +V+ VP DF ARF A +R
Sbjct: 63 HVDFEKNWY-----------THTIRDALNAHLRKQGEDISILNVQNVPDDFDARFSAIKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ +AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRRSPPALNAK-RVWWLPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVQR------------------------------EGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L AK T +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTTQDLEAALHAKDRTRCGVVAPPSGLYLTKVEY 247
>gi|378721968|ref|YP_005286855.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Colombia]
gi|376326992|gb|AFB24231.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Colombia]
Length = 245
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + + RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGAGRTDAGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + +N+F++ + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITTINYFVRPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|350273993|ref|YP_004885306.1| tRNA pseudouridine synthase A [Rickettsia japonica YH]
gi|348593206|dbj|BAK97167.1| tRNA pseudouridine synthase A [Rickettsia japonica YH]
Length = 245
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 153/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V VLEEA +KF + V + + RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQVLEEAIYKFSSEQVMLFGAGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVSAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|319898267|ref|YP_004158360.1| tRNA pseudouridine synthase A [Bartonella clarridgeiae 73]
gi|319402231|emb|CBI75764.1| tRNA pseudouridine synthase A [Bartonella clarridgeiae 73]
Length = 247
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 152/299 (50%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G+ ++G Q+Q N RT+ G +E+A F GQ ++I+ + RTDAGVHA
Sbjct: 1 MARFKLTLEYDGSNYAGWQRQANLRTIQGSIEQAIFHFSGQKLTITTAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQ 175
V H+D E+ ++ VR A+N LQ +G DI + +V+ VP +F ARF A
Sbjct: 61 VAHIDFEK-----------NWNTHTVRDALNAHLQKQGEDISILNVQNVPDNFDARFCAT 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y ++IL+ P V R W + + LD AM +A + LVG HDF++FR++ CQA S
Sbjct: 110 KRHYLFKILNRRSP-PVLNAKRVWWLPKPLDADAMHKAAQRLVGQHDFTTFRSAHCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIRTL+ L + G +F +
Sbjct: 169 PIRTLERLDIQR------------------------------KGEEIF----------LY 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+ARSFL+HQ+R G L VG G T D+E L AK +AP GL L V Y
Sbjct: 189 AQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHAKNRARCGVVAPPSGLYLIKVDY 247
>gi|229587225|ref|YP_002845726.1| tRNA pseudouridine synthase A [Rickettsia africae ESF-5]
gi|259550437|sp|C3PLZ3.1|TRUA_RICAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|228022275|gb|ACP53983.1| tRNA pseudouridine synthase A [Rickettsia africae ESF-5]
Length = 245
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ S
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSS 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG V ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQVEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|49474896|ref|YP_032937.1| tRNA pseudouridine synthase A [Bartonella henselae str. Houston-1]
gi|51316603|sp|Q6G547.1|TRUA_BARHE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|49237701|emb|CAF26890.1| tRNA pseudouridine synthase A [Bartonella henselae str. Houston-1]
Length = 247
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 152/297 (51%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q RT+ LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELRTIQSALEQALFHFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD E+ + + VR A+N LQ +GD I + V+ VP F ARF A +R
Sbjct: 63 HVDFEKNWR-----------THTVRDALNAHLQKQGDNIAILHVQNVPDSFDARFSAIKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ +AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRRSPPALNTK-RVWWIPKPLNAQAMHEAAQKLVGKHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVQR------------------------------EGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L AK T +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTTQDLEAALHAKDRTRCGMVAPPSGLYLTKVEY 247
>gi|359788022|ref|ZP_09291006.1| tRNA pseudouridine synthase A [Mesorhizobium alhagi CCNWXJ12-2]
gi|359256227|gb|EHK59099.1| tRNA pseudouridine synthase A [Mesorhizobium alhagi CCNWXJ12-2]
Length = 250
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 155/299 (51%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G+ ++G Q+Q +V +E+A F G +++ + RTDAGVHA
Sbjct: 1 MPRYRLDIEYDGSTYAGWQRQDGPHSVQAAIEQAIKSFCGDEIALRGAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D ++K P + VR A+N LQ G+ + V + VP DF ARF A
Sbjct: 61 VAHAD---LTKEWPADT--------VRDAINAHLQMAGEAVAVLAAKPVPDDFDARFSAT 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI++ P + EK+RAW V ++LD+ AMQEA +LVG HDF++FR+ CQA+S
Sbjct: 110 GRQYLYRIINRRAP-AALEKNRAWWVPKQLDVEAMQEAALMLVGRHDFTTFRSVQCQASS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTL+ L V R+ E+
Sbjct: 169 PVRTLERLDV----------------------------------------RRSGELIEIH 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A ARSFL++QVR +VG LK VG G +DV+ L+AK A +AP GL L V+Y
Sbjct: 189 AAARSFLHNQVRSMVGSLKRVGEGGWRPADVKAALEAKNRAACGAVAPPEGLYLTGVRY 247
>gi|288959244|ref|YP_003449585.1| tRNA pseudouridine synthase A [Azospirillum sp. B510]
gi|288911552|dbj|BAI73041.1| tRNA pseudouridine synthase A [Azospirillum sp. B510]
Length = 245
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 147/298 (49%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QR+ + VEY G F G Q+Q N +V LEEA + G+ + S RTDAGVHA
Sbjct: 1 MQRWKLTVEYDGRPFVGWQRQDNGPSVQQSLEEAVRRLSGEVARVHGSGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
VCH D+E+ P + +R A+N L+ I V +V V DFHAR +
Sbjct: 61 VCHFDLEK-----------PFTALKLRDALNFHLKP-APIAVLEVEAVTEDFHARLTSTG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ E RAWHVT LD AM A +VLVG HDFSSFRA+ CQA SP
Sbjct: 109 RAYVYRIVNRRAPLAL-ESGRAWHVTRPLDADAMHAAAQVLVGQHDFSSFRAALCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L + ++ V A
Sbjct: 168 VKTLDRL----------------------------------------AVERQGDEIRVHA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L+ VG G+ T DV R L+A A P P GL +Y
Sbjct: 188 AARSFLHHQVRNMVGTLELVGAGKWTADDVRRALEACDRAKAGPTCPPDGLYFLAARY 245
>gi|433771871|ref|YP_007302338.1| pseudouridylate synthase I [Mesorhizobium australicum WSM2073]
gi|433663886|gb|AGB42962.1| pseudouridylate synthase I [Mesorhizobium australicum WSM2073]
Length = 250
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/297 (39%), Positives = 154/297 (51%), Gaps = 52/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ F+G Q Q + +V +E+A KF G+ V + + RTDAGVHA + V
Sbjct: 3 RFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAVRLRAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD+ + P D VR AVN LQ+ G I++ VP DF ARF A R
Sbjct: 63 HVDLAKAW---------PDDK--VRDAVNAHLQAAGARIVILKATIVPDDFDARFSAIGR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRIL+ P S EK + W V + LD AM EA K+L+G HDF++FR++ CQANSPI
Sbjct: 112 HYLYRILNRRAP-SALEKGKVWWVPKRLDAAAMHEAAKLLLGRHDFTTFRSTQCQANSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L VS G ++ EV A
Sbjct: 171 RTLERLDVSRA------------------------------GDDLI---------EVRAS 191
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL++QVR +VG LK VG G T D++ L+A+ A +AP GL L V Y
Sbjct: 192 ARSFLHNQVRSMVGSLKRVGDGGWTSGDLKAALEARDRAACGQVAPPDGLFLIGVDY 248
>gi|383484618|ref|YP_005393531.1| tRNA pseudouridine synthase A [Rickettsia parkeri str. Portsmouth]
gi|378936972|gb|AFC75472.1| tRNA pseudouridine synthase A [Rickettsia parkeri str. Portsmouth]
Length = 245
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 153/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ S
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSS 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKNRKAAGPTAPASGLY--FVK 242
>gi|34581081|ref|ZP_00142561.1| pseudouridylate synthase I [Rickettsia sibirica 246]
gi|28262466|gb|EAA25970.1| pseudouridylate synthase I [Rickettsia sibirica 246]
Length = 245
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 153/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ S
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSS 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|395764937|ref|ZP_10445557.1| tRNA pseudouridine synthase A [Bartonella sp. DB5-6]
gi|395413754|gb|EJF80216.1| tRNA pseudouridine synthase A [Bartonella sp. DB5-6]
Length = 247
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 152/297 (51%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q T+ G LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQTELHTIQGALEQAIFHFCGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD E+ + VR A+N +LQ +G DI + +V+ VP +F ARF A +R
Sbjct: 63 HVDFEK-----------NWHTHTVRDALNAYLQKQGEDISILNVQNVPDNFDARFSAVKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRRSPPALNAK-RVWWLPKPLNAEAMHEAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVQR------------------------------EGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L AK +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTARDLEAALHAKDRKRCGVVAPPSGLYLTKVEY 247
>gi|163867374|ref|YP_001608568.1| tRNA pseudouridine synthase A [Bartonella tribocorum CIP 105476]
gi|189029992|sp|A9ILJ7.1|TRUA_BART1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|161017015|emb|CAK00573.1| tRNA pseudouridine synthase A [Bartonella tribocorum CIP 105476]
Length = 247
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G+ ++G Q+Q T+ G LE+A +F GQ ++I+ + RTDAGVHA
Sbjct: 1 MSRFKLTLEYDGSNYAGWQRQAKLHTIQGALEQAIFRFSGQQLTITTAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V HVD + PPH VR A+N L+ + + I + +V VP DF ARF A
Sbjct: 61 VAHVDFIK--------NWPPH---TVRDALNALLRQQSEAISILNVENVPDDFDARFSAI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y ++IL+ P ++ K R W + + L+ +AM EA + LVG HDF++FR++ CQA S
Sbjct: 110 KRHYLFKILNRRSPPALNAK-RVWWIPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIRTL+ L + + G +F +
Sbjct: 169 PIRTLERLDIQK------------------------------EGEEIF----------IY 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+ARSFL+HQ+R G L VG G T D+E L AK +AP GL L V+Y
Sbjct: 189 AKARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGVVAPPSGLYLTKVEY 247
>gi|167648522|ref|YP_001686185.1| tRNA pseudouridine synthase A [Caulobacter sp. K31]
gi|189029993|sp|B0T1S6.1|TRUA_CAUSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|167350952|gb|ABZ73687.1| tRNA pseudouridine synthase A [Caulobacter sp. K31]
Length = 249
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 146/297 (49%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G ++G Q Q + +V G +E A F GQ + I+ + RTD GVHA + V
Sbjct: 3 RYRLTIEYDGRPYNGFQAQASQPSVQGAIEAAVKAFTGQTIRIAAAGRTDTGVHATAQVV 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD+ER P E V A+N L E I V D V D+HARF A ER
Sbjct: 63 HVDLER---DWPAET--------VMNALNAHLVREA-ISVLDAVVVSDDWHARFSANERR 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRIL+ P E+ + WHV + +D AMQ A + LVG HDF++FR CQA SP++
Sbjct: 111 YLYRILNRRAP-PALERGKVWHVKKPIDADAMQTAAQALVGLHDFTTFRDMACQAKSPLK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD VS V G V H +E A
Sbjct: 170 TLDVARVSRV------------------------------GDEV------HLVFE----A 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RSFL+ QVR + G L VG G T DV L+A+ TA P+APA GL L V Y+
Sbjct: 190 RSFLHRQVRSMTGTLAEVGVGRWTADDVMAALEARDRTACGPVAPADGLYLTGVGYE 246
>gi|319403559|emb|CBI77141.1| tRNA pseudouridine synthase A [Bartonella rochalimae ATCC BAA-1498]
Length = 247
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 153/297 (51%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q N RT+ G +E A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQKNLRTIQGSIENAIFHFSGQKLTITTAGRTDAGVHAMGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
H+D E+ +++ VR A+N LQ +G DI V +V+ VP +F ARF A +R
Sbjct: 63 HIDFEK-----------NWNTNTVRDALNAHLQKQGEDIAVLNVQNVPDNFDARFCATKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + LD AM +A + LVG HDF++FR++ CQA SP+
Sbjct: 112 HYLFKILNRRSPPALNTK-RVWWLPKPLDADAMHKAAQKLVGQHDFTTFRSAYCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L + G +F + A+
Sbjct: 171 RTLERLDIQR------------------------------EGDEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L A+ +AP GL L V Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHARNRARCGVVAPPSGLYLMKVDY 247
>gi|170742366|ref|YP_001771021.1| tRNA pseudouridine synthase A [Methylobacterium sp. 4-46]
gi|238688005|sp|B0UP40.1|TRUA_METS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|168196640|gb|ACA18587.1| tRNA pseudouridine synthase A [Methylobacterium sp. 4-46]
Length = 250
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 148/301 (49%), Gaps = 53/301 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G+ F+G Q+Q RTV LEEA +F G PV + + RTDAGVHA
Sbjct: 1 MPRYKLVVEYDGSGFAGWQRQAADRTVQQALEEAIARFAGAPVRVHCAGRTDAGVHATHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D++R + + VR A N L+ E +V+ R P DF AR A
Sbjct: 61 VVHLDLDRDWR-----------TDTVRDASNAHLRPEPVAVVSAERVRP-DFDARHSALR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + WHV LD AM A + L+G HDFS+FRA+ CQANSP
Sbjct: 109 RHYRYRILNRRSP-PALGRAYLWHVPWSLDAHAMHAAAQTLLGRHDFSAFRAAECQANSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD+L V+ + G + V
Sbjct: 168 VRTLDQLDVARI------------------------------GDEIL----------VAT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L G G L + V +L ++ T P+APA GL+L V Y
Sbjct: 188 SARSFLHHQVRGMVGTLMLAGCGRLDAAGVRAVLDSRDRTRCGPLAPAAGLTLTGVDYPE 247
Query: 357 P 357
P
Sbjct: 248 P 248
>gi|383501124|ref|YP_005414483.1| tRNA pseudouridine synthase A [Rickettsia australis str. Cutlack]
gi|378932135|gb|AFC70640.1| tRNA pseudouridine synthase A [Rickettsia australis str. Cutlack]
Length = 245
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 153/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + ++V V ++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IIMAINYFARPYA-VVVWHCAIVLNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AM++A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RHYIYRIINRPYP-SVIDLNRAWWISSPLDVLAMKKAATYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ + D + ++
Sbjct: 168 IKTLTELNI-----------VTGDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +LKAK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEHIKDVLKAKDRKAAGPTAPASGLY--FVK 242
>gi|395791607|ref|ZP_10471063.1| tRNA pseudouridine synthase A [Bartonella alsatica IBS 382]
gi|395407910|gb|EJF74530.1| tRNA pseudouridine synthase A [Bartonella alsatica IBS 382]
Length = 247
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 150/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY GT ++G Q+Q+ RT+ LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGTNYAGWQRQVGLRTIQNALEQAIFHFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD + P H VR A+N L+ EG DI + +V VP F ARF A +R
Sbjct: 63 HVDFIK--------NWPTH---TVRDALNVHLRKEGEDISILNVENVPDSFDARFSAIKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRRSPPALNAK-RVWWLPKPLNAEAMHEAAQKLVGLHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVQR------------------------------NGEEIF----------IYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T+ D+E L AK +AP GL L V Y
Sbjct: 191 ARSFLHHQIRSFTGSLMEVGIGRWTIQDLEAALHAKDRMRCGMVAPPSGLYLTQVDY 247
>gi|423711976|ref|ZP_17686281.1| tRNA pseudouridine synthase A [Bartonella washoensis Sb944nv]
gi|395412824|gb|EJF79304.1| tRNA pseudouridine synthase A [Bartonella washoensis Sb944nv]
Length = 247
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 152/297 (51%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q RT+ LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAGLRTIQSALEQAIFHFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD + + VR A+N +L+ +G DI + +V+ VP+ F ARF A +R
Sbjct: 63 HVD-----------FIKNWHTHTVRDALNAYLRKQGEDISILNVQNVPNSFDARFSAVKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRRSPPALNAK-RVWWLPTPLNAEAMHEAAQKLVGQHDFTTFRSTHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTLD L V G +F + A+
Sbjct: 171 RTLDCLDVQR------------------------------KGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G TV D+E L+AK T +AP GL L V Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTVQDLEAALQAKDRTRCGMVAPPSGLYLTQVDY 247
>gi|254418055|ref|ZP_05031779.1| tRNA pseudouridine synthase A [Brevundimonas sp. BAL3]
gi|196184232|gb|EDX79208.1| tRNA pseudouridine synthase A [Brevundimonas sp. BAL3]
Length = 247
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 151/299 (50%), Gaps = 56/299 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY GT ++G Q Q + TV G +E A F G+ + I+ + RTD GVHA + V
Sbjct: 3 RYKLTLEYDGTAYNGFQAQADQPTVQGAVEAAILAFSGERIRIAAAGRTDTGVHATAQVI 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPS-DFHARFRAQER 177
H D+ER P D+ V AVN L + D+ V P D+HARF A R
Sbjct: 63 HADLERDW---------PVDT--VLNAVNAHLIKQ-DVCVLSAEYAPDPDWHARFSATGR 110
Query: 178 TYFYRILSG-PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
Y YRIL+ P+P V E+DR WHV + LD AM +A +VLVG HDF++FR GCQ+ SP
Sbjct: 111 GYLYRILNRRPQP--VLERDRVWHVKKSLDAEAMHQAAQVLVGLHDFTTFRDVGCQSKSP 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD VS FG ++
Sbjct: 169 VKTLDVARVSR-----------------------------------FG-----EEVHLVF 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+ARSFL+ QVR + G L VG G T DV+ L+AK P+AP+ GL L V+YD
Sbjct: 189 QARSFLHRQVRSMAGTLVEVGLGRWTAHDVKAALEAKDRARCGPVAPSAGLYLSGVRYD 247
>gi|13474062|ref|NP_105630.1| tRNA pseudouridine synthase A [Mesorhizobium loti MAFF303099]
gi|30913408|sp|Q98D55.1|TRUA_RHILO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|14024814|dbj|BAB51416.1| tRNA-pseudouridine synthase [Mesorhizobium loti MAFF303099]
Length = 248
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 156/297 (52%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ F+G Q Q + +V +E+A KF G+ V + + RTDAGVHA++ V
Sbjct: 3 RFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAVRLRAAGRTDAGVHASAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD ++K PG+ VR AVN LQ+ G + + VP DF ARF A R
Sbjct: 63 HVD---LAKPWPGDK--------VRDAVNAHLQAAGAHVAILKAAIVPDDFDARFSATGR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRIL+ P + EK + W V + LD AM EA K+L+G HDF++FR++ CQANSP+
Sbjct: 112 HYLYRILNRRAP-AALEKGKVWWVPKRLDAGAMHEAAKLLLGRHDFTTFRSTQCQANSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L VS G + EV A
Sbjct: 171 RTLERLDVSRA------------------------------GDMI----------EVRAS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL++QVR +VG LK VG G T ++++ L+A+ A +AP GL L V Y
Sbjct: 191 ARSFLHNQVRSMVGSLKRVGDGGWTEAELKAALEARDRAACGQVAPPDGLFLIGVDY 247
>gi|319406472|emb|CBI80113.1| tRNA pseudouridine synthase A [Bartonella sp. 1-1C]
Length = 247
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 154/299 (51%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G+ ++G Q+Q N RT+ G +E A F GQ ++I+ + RTDAGVHA
Sbjct: 1 MARFKLTLEYDGSNYAGWQRQKNLRTIQGSIENAIFHFSGQKLTITTAGRTDAGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQ 175
V H+D E+ +++ VR A+N LQ +G +I V +V+ VP +F ARF A
Sbjct: 61 VAHIDFEK-----------NWNTNTVRDALNAHLQKQGENIAVLNVQNVPDNFDARFCAT 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y ++IL+ P ++ K R W + + LD AM +A + LVG HDF++FR++ CQA S
Sbjct: 110 KRHYLFKILNRRSPPALNTK-RVWWLPKPLDADAMHKAAQKLVGQHDFTTFRSAYCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTL+ L + G +F +
Sbjct: 169 PVRTLERLDIQR------------------------------EGDEIF----------LY 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+ARSFL+HQ+R G L VG G T D+E L A+ +AP GL L V Y
Sbjct: 189 AQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHARNRARCGVVAPPSGLYLMKVDY 247
>gi|154250719|ref|YP_001411543.1| tRNA pseudouridine synthase A [Parvibaculum lavamentivorans DS-1]
gi|171769555|sp|A7HPQ3.1|TRUA_PARL1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|154154669|gb|ABS61886.1| tRNA pseudouridine synthase A [Parvibaculum lavamentivorans DS-1]
Length = 246
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 147/297 (49%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G+ F G Q Q N R+V VLEE F GQ + I + RTDAGVHA V
Sbjct: 3 RYKLTIEYDGSPFVGWQAQTNGRSVQQVLEEGIKGFCGQELKIFGAGRTDAGVHALGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD E P +R AVN ++ + + + VP F ARF A +R
Sbjct: 63 HVDFE-----------TPVAPDTLRDAVNAHMRPH-PVAIVEAEEVPDSFEARFSAVKRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI++ PL++ ++ +AW V + LD AM +A + LVG HDF++FR+ CQA SP++
Sbjct: 111 YMYRIVNRRAPLTL-DRGQAWLVHKTLDADAMHDAAQALVGNHDFTTFRSVQCQAKSPVK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+DE+ VS E++ RA
Sbjct: 170 TVDEISVSRYAD----------------------------------------EIEIVCRA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RSFL++QVR VG LK VG G T VE+ L AK A P+AP GL L V Y+
Sbjct: 190 RSFLHNQVRSFVGTLKMVGDGSWTRRKVEKALAAKDRAACGPVAPPDGLYLLQVDYE 246
>gi|389694005|ref|ZP_10182099.1| pseudouridylate synthase I [Microvirga sp. WSM3557]
gi|388587391|gb|EIM27684.1| pseudouridylate synthase I [Microvirga sp. WSM3557]
Length = 248
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 145/302 (48%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT F+G Q Q N +V +E+A +F G V I + RTD+GVHA
Sbjct: 1 MPRYKLVVEYDGTPFTGWQHQTNGLSVQQAVEDAIARFTGAAVRIHCAGRTDSGVHATHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+++ + VR A N L+ + + VP FHAR A +
Sbjct: 61 VVHVDLDKDWR-----------PDTVRDATNAHLKP-APVAILSAEAVPETFHARLSAVK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + +R WHV +LD M EA + L+G HDF++FRA+ CQANSP
Sbjct: 109 RHYVYRILNRRAP-PALDANRVWHVAWKLDAGLMHEAAQTLIGRHDFTTFRAAECQANSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L V + G + + A
Sbjct: 168 VRTLDRLDVERI------------------------------GDEI----------RIYA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR + G L+ G G +V DV L A+ PMAP+ GL L + D
Sbjct: 188 SARSFLHHQVRSMTGTLERAGAGRWSVEDVRAALDARDRRRCGPMAPSTGLYL--IGVDY 245
Query: 357 PE 358
PE
Sbjct: 246 PE 247
>gi|67459748|ref|YP_247372.1| tRNA pseudouridine synthase A [Rickettsia felis URRWXCal2]
gi|75535862|sp|Q4UJT2.1|TRUA_RICFE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|67005281|gb|AAY62207.1| tRNA pseudouridine synthase A [Rickettsia felis URRWXCal2]
Length = 245
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 152/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVISVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + ++FHARF A
Sbjct: 61 VAHFDLSK--------HLEPHK---IITAINYFARPYA-VGVWNCELASNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ MQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RHYIYRIINRPYP-SVIDLNRAWWISSPLDVLTMQKAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNVWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|398828000|ref|ZP_10586202.1| pseudouridylate synthase I [Phyllobacterium sp. YR531]
gi|398218718|gb|EJN05220.1| pseudouridylate synthase I [Phyllobacterium sp. YR531]
Length = 259
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 152/301 (50%), Gaps = 57/301 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT ++G Q+Q N TV +E+A KF G+ +S+ + RTD+GVHA++ V
Sbjct: 3 RYKLTVEYDGTPYAGWQRQENGHTVQAAIEQAIFKFCGETISLGAAGRTDSGVHASAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + SS VR A+N H + ++ I + +V V S F ARF A R
Sbjct: 63 HVDLTK-----------DWSSSKVREALNAHLVFADETISIMNVELVSSQFDARFSATGR 111
Query: 178 TYFYRILS--GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
Y YRI++ P PL F RAW V + LD+ AM A + L+G HDF++FRA+ CQ+ S
Sbjct: 112 HYLYRIVNRRPPAPLEAF---RAWWVKKPLDVEAMHIAAQRLIGTHDFTTFRATQCQSKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P++TLD L VS NG E+
Sbjct: 169 PVKTLDHLSVSR-----------------------------NG-----------EIVEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A ARSFL++Q+R G L+ VG G DV L+A+ P+AP GL L V Y
Sbjct: 189 ASARSFLHNQIRSFAGTLQEVGCGRWDADDVTAALEARDRQTCGPVAPPHGLYLIGVDYP 248
Query: 356 L 356
L
Sbjct: 249 L 249
>gi|298293826|ref|YP_003695765.1| tRNA pseudouridine synthase A [Starkeya novella DSM 506]
gi|296930337|gb|ADH91146.1| tRNA pseudouridine synthase A [Starkeya novella DSM 506]
Length = 250
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 144/298 (48%), Gaps = 48/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY GT F G Q Q +V G L +A + G+ V++ + RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGTPFVGWQIQAEGTSVQGALAQAVTRLTGEQVAVHGAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HV++ R + VR A+N L+ I V DFHARF A
Sbjct: 61 VAHVELSRDWR-----------PDTVRDALNAHLRPH-PIAVLSAERAADDFHARFSATG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P E++RAW V LD+ M E LVG HDF++FRA GCQA SP
Sbjct: 109 RRYVYRIIA-RRPDLALERNRAWRVLRPLDVAGMAEGAARLVGRHDFTTFRAVGCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V EV + P GM V A
Sbjct: 168 LKTLDRLEVEEVA---------LEGP-----------GM---------------EIRVHA 192
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L VG G T DV L+AK T PMAP+ GL L V Y
Sbjct: 193 AARSFLHHQVRSMVGTLVKVGEGAWTPDDVTAALEAKDRTRCGPMAPSAGLYLAEVTY 250
>gi|395780429|ref|ZP_10460891.1| tRNA pseudouridine synthase A [Bartonella washoensis 085-0475]
gi|395418775|gb|EJF85092.1| tRNA pseudouridine synthase A [Bartonella washoensis 085-0475]
Length = 247
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q RT+ LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAGLRTIQSALEQAIFHFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD + + VR A+N +L+ +G DI + +V+ VP+ F ARF A +R
Sbjct: 63 HVD-----------FIKNWHTHTVRDALNAYLRKQGEDISILNVQNVPNSFDARFSAVKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRRSPPALNAK-RVWWLPTPLNAEAMHEAAQKLVGQHDFTTFRSTHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTLD L V G +F + A+
Sbjct: 171 RTLDCLDVQR------------------------------KGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G TV D+E L+AK +AP GL L V Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTVQDLEAALQAKDRARCGMVAPPSGLYLTQVDY 247
>gi|157826343|ref|YP_001494063.1| tRNA pseudouridine synthase A [Rickettsia akari str. Hartford]
gi|166228757|sp|A8GQ80.1|TRUA_RICAH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157800301|gb|ABV75555.1| tRNA pseudouridine synthase A [Rickettsia akari str. Hartford]
Length = 245
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 152/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + ++V V +DFHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VVVWHCAIVLNDFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RHYIYRIINRPYP-SVIDLNRAWWISSPLDVLAMQKAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ + D KL +
Sbjct: 168 IKTLTELNIVKG-------------------DEEIKLYLS-------------------- 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA APA GL FVK
Sbjct: 189 -APSFLHHMVRNIVGSLVLVGKNIWQAEHIKDVLEAKDRKAAGLTAPAYGLY--FVK 242
>gi|384261728|ref|YP_005416914.1| tRNA pseudouridine synthase A [Rhodospirillum photometricum DSM
122]
gi|378402828|emb|CCG07944.1| tRNA pseudouridine synthase A [Rhodospirillum photometricum DSM
122]
Length = 328
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 150/299 (50%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F G Q+Q N +V LE A + GQPV + S RTD+GVHA
Sbjct: 76 MPRYRLTVEYDGRPFVGWQRQDNGLSVQEALETAAERLCGQPVRVHGSGRTDSGVHALGQ 135
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ R + + VR+A+N ++ + V + V FHARF A E
Sbjct: 136 VAHLDLPRA-----------YGAPTVRKALNAHVRPW-PVAVVASQEVDDTFHARFSAVE 183
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YR+L+ P ++ + W VT LD +AM EA +VLVG HDFSSFRAS CQA SP
Sbjct: 184 RSYLYRLLNREAP-PTLDQGKVWWVTRPLDAQAMDEAAQVLVGRHDFSSFRASECQAESP 242
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL L V V G + V
Sbjct: 243 VKTLAALRVRRV------------------------------GDEI----------HVTT 262
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RARSFL+HQVR +VG L+ VG G T +DV L A + AA P APA GL V+YD
Sbjct: 263 RARSFLHHQVRNMVGTLELVGAGRWTRADVADALAACSRAAAGPTAPAEGLYFRAVRYD 321
>gi|144900443|emb|CAM77307.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1]
Length = 245
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY GT F G Q+Q N +V G +E A +F G +++ + RTDAGVHA V
Sbjct: 3 RFKLLIEYHGTPFVGWQRQDNGISVQGEVEAAIFRFCGLETTVTAAGRTDAGVHATGQVI 62
Query: 119 HVDVER-ISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D++R +S + V+ A+N+ L+ I V V VP DFHARF A R
Sbjct: 63 HFDLDRDVSAER------------VQGALNYHLKPH-PIAVRAVEIVPDDFHARFSALGR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
+Y YRI++ P+++ E++R W V+ L+ AMQEA + L+G HDF+SFRA+ CQA SP
Sbjct: 110 SYLYRIVNRRAPVAI-ERERVWWVSVPLNAEAMQEAAQHLLGRHDFTSFRAAACQAQSPD 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ + +IA
Sbjct: 169 KTLDLLQVT----------------------------------------RTDEEIRMIAE 188
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG LK VG G+ V+ L+A+ AA P AP GL L V Y
Sbjct: 189 ARSFLHHQVRNMVGTLKLVGEGKWHPDRVKAALEARDRAAAGPTAPPDGLYLTGVVY 245
>gi|17988610|ref|NP_541243.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M]
gi|62317861|ref|YP_223714.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. 9-941]
gi|83269839|ref|YP_419130.1| tRNA pseudouridine synthase A [Brucella melitensis biovar Abortus
2308]
gi|148558621|ref|YP_001257944.1| tRNA pseudouridine synthase A [Brucella ovis ATCC 25840]
gi|161621080|ref|YP_001594966.1| tRNA pseudouridine synthase A [Brucella canis ATCC 23365]
gi|163845146|ref|YP_001622801.1| tRNA pseudouridine synthase A [Brucella suis ATCC 23445]
gi|221090245|ref|YP_002519393.1| tRNA pseudouridine synthase A [Brucella suis 1330]
gi|225629482|ref|ZP_03787515.1| tRNA pseudouridine synthase A [Brucella ceti str. Cudo]
gi|225686787|ref|YP_002734759.1| tRNA pseudouridine synthase A [Brucella melitensis ATCC 23457]
gi|237817402|ref|ZP_04596394.1| tRNA pseudouridine synthase A [Brucella abortus str. 2308 A]
gi|256015792|ref|YP_003105801.1| tRNA pseudouridine synthase A [Brucella microti CCM 4915]
gi|256262079|ref|ZP_05464611.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 2 str. 63/9]
gi|260545096|ref|ZP_05820917.1| tRNA pseudouridine synthase A [Brucella abortus NCTC 8038]
gi|260565077|ref|ZP_05835562.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M]
gi|260567722|ref|ZP_05838191.1| tRNA pseudouridine synthase A [Brucella suis bv. 4 str. 40]
gi|260756224|ref|ZP_05868572.1| pseudouridylate synthase [Brucella abortus bv. 6 str. 870]
gi|260760407|ref|ZP_05872755.1| pseudouridylate synthase [Brucella abortus bv. 4 str. 292]
gi|260763647|ref|ZP_05875979.1| pseudouridylate synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260882048|ref|ZP_05893662.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68]
gi|261216474|ref|ZP_05930755.1| pseudouridylate synthase [Brucella abortus bv. 3 str. Tulya]
gi|261217618|ref|ZP_05931899.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1]
gi|261220842|ref|ZP_05935123.1| tRNA pseudouridine synthase A [Brucella ceti B1/94]
gi|261312915|ref|ZP_05952112.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10]
gi|261318310|ref|ZP_05957507.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94]
gi|261320495|ref|ZP_05959692.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1]
gi|261322745|ref|ZP_05961942.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33]
gi|261750722|ref|ZP_05994431.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513]
gi|261753978|ref|ZP_05997687.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686]
gi|261757220|ref|ZP_06000929.1| tRNA pseudouridine synthase A [Brucella sp. F5/99]
gi|265986108|ref|ZP_06098665.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1]
gi|265990323|ref|ZP_06102880.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str.
Rev.1]
gi|265992570|ref|ZP_06105127.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str.
Ether]
gi|265995802|ref|ZP_06108359.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1]
gi|294853986|ref|ZP_06794658.1| tRNA pseudouridine synthase A [Brucella sp. NVSL 07-0026]
gi|297249204|ref|ZP_06932905.1| tRNA pseudouridine synthase A [Brucella abortus bv. 5 str. B3196]
gi|340792795|ref|YP_004758259.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94]
gi|376271530|ref|YP_005114575.1| tRNA pseudouridine synthase A [Brucella abortus A13334]
gi|376277458|ref|YP_005153519.1| tRNA pseudouridine synthase A [Brucella canis HSK A52141]
gi|376278978|ref|YP_005109011.1| tRNA pseudouridine synthase A [Brucella suis VBI22]
gi|384213546|ref|YP_005602629.1| tRNA pseudouridine synthase A [Brucella melitensis M5-90]
gi|384223538|ref|YP_005614703.1| tRNA pseudouridine synthase A [Brucella suis 1330]
gi|384410648|ref|YP_005599268.1| tRNA pseudouridine synthase A [Brucella melitensis M28]
gi|384447145|ref|YP_005661363.1| tRNA pseudouridine synthase A [Brucella melitensis NI]
gi|423168234|ref|ZP_17154936.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI435a]
gi|423172331|ref|ZP_17159005.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI474]
gi|423173938|ref|ZP_17160608.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI486]
gi|423175814|ref|ZP_17162480.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI488]
gi|423181760|ref|ZP_17168400.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI010]
gi|423184893|ref|ZP_17171529.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI016]
gi|423188046|ref|ZP_17174659.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI021]
gi|423190463|ref|ZP_17177072.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI259]
gi|30913400|sp|Q8YDB2.1|TRUA_BRUME RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|62901254|sp|Q60CV4.1|TRUA_BRUSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|81309258|sp|Q576T1.1|TRUA_BRUAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|123754475|sp|Q2YJQ4.1|TRUA_BRUA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166228682|sp|A5VVT9.1|TRUA_BRUO2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189030128|sp|A9MCV8.1|TRUA_BRUC2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189030129|sp|A9WW43.1|TRUA_BRUSI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254789607|sp|C0RMH2.1|TRUA_BRUMB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|17984412|gb|AAL53507.1| tRNA pseudouridine synthase a [Brucella melitensis bv. 1 str. 16M]
gi|54112373|gb|AAV28867.1| tRNA pseudouridine synthase A [Brucella suis 1330]
gi|62198054|gb|AAX76353.1| TruA, tRNA pseudouridine synthase A [Brucella abortus bv. 1 str.
9-941]
gi|82940113|emb|CAJ13161.1| tRNA pseudouridine synthase [Brucella melitensis biovar Abortus
2308]
gi|148369906|gb|ABQ62778.1| tRNA pseudouridine synthase A [Brucella ovis ATCC 25840]
gi|161337891|gb|ABX64195.1| tRNA pseudouridine synthase A [Brucella canis ATCC 23365]
gi|163675869|gb|ABY39979.1| tRNA pseudouridine synthase A [Brucella suis ATCC 23445]
gi|225615978|gb|EEH13027.1| tRNA pseudouridine synthase A [Brucella ceti str. Cudo]
gi|225642892|gb|ACO02805.1| tRNA pseudouridine synthase A [Brucella melitensis ATCC 23457]
gi|237788215|gb|EEP62431.1| tRNA pseudouridine synthase A [Brucella abortus str. 2308 A]
gi|255998452|gb|ACU50139.1| tRNA pseudouridine synthase A [Brucella microti CCM 4915]
gi|260098367|gb|EEW82241.1| tRNA pseudouridine synthase A [Brucella abortus NCTC 8038]
gi|260152720|gb|EEW87813.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M]
gi|260154387|gb|EEW89468.1| tRNA pseudouridine synthase A [Brucella suis bv. 4 str. 40]
gi|260670725|gb|EEX57665.1| pseudouridylate synthase [Brucella abortus bv. 4 str. 292]
gi|260674068|gb|EEX60889.1| pseudouridylate synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260676332|gb|EEX63153.1| pseudouridylate synthase [Brucella abortus bv. 6 str. 870]
gi|260871576|gb|EEX78645.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68]
gi|260918081|gb|EEX84942.1| pseudouridylate synthase [Brucella abortus bv. 3 str. Tulya]
gi|260919426|gb|EEX86079.1| tRNA pseudouridine synthase A [Brucella ceti B1/94]
gi|260922707|gb|EEX89275.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1]
gi|261293185|gb|EEX96681.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1]
gi|261297533|gb|EEY01030.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94]
gi|261298725|gb|EEY02222.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33]
gi|261301941|gb|EEY05438.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10]
gi|261737204|gb|EEY25200.1| tRNA pseudouridine synthase A [Brucella sp. F5/99]
gi|261740475|gb|EEY28401.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513]
gi|261743731|gb|EEY31657.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686]
gi|262550099|gb|EEZ06260.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1]
gi|262763440|gb|EEZ09472.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str.
Ether]
gi|263000992|gb|EEZ13682.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str.
Rev.1]
gi|263091768|gb|EEZ16099.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 2 str. 63/9]
gi|264658305|gb|EEZ28566.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1]
gi|294819641|gb|EFG36641.1| tRNA pseudouridine synthase A [Brucella sp. NVSL 07-0026]
gi|297173073|gb|EFH32437.1| tRNA pseudouridine synthase A [Brucella abortus bv. 5 str. B3196]
gi|326411195|gb|ADZ68259.1| tRNA pseudouridine synthase A [Brucella melitensis M28]
gi|326554486|gb|ADZ89125.1| tRNA pseudouridine synthase A [Brucella melitensis M5-90]
gi|340561254|gb|AEK56491.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94]
gi|343384986|gb|AEM20477.1| tRNA pseudouridine synthase A [Brucella suis 1330]
gi|349745142|gb|AEQ10684.1| tRNA pseudouridine synthase A [Brucella melitensis NI]
gi|358260416|gb|AEU08149.1| tRNA pseudouridine synthase A [Brucella suis VBI22]
gi|363402702|gb|AEW19671.1| tRNA pseudouridine synthase A [Brucella abortus A13334]
gi|363405832|gb|AEW16126.1| tRNA pseudouridine synthase A [Brucella canis HSK A52141]
gi|374536753|gb|EHR08273.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI474]
gi|374538727|gb|EHR10234.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI435a]
gi|374539939|gb|EHR11441.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI486]
gi|374546350|gb|EHR17810.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI010]
gi|374547193|gb|EHR18652.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI016]
gi|374554226|gb|EHR25639.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI021]
gi|374556503|gb|EHR27908.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI259]
gi|374556614|gb|EHR28018.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. NI488]
Length = 251
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V G +E+AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ I + +V F ARF A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V ++LD AM EA + L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MVEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLVGVDYAFP 250
>gi|110679351|ref|YP_682358.1| tRNA pseudouridine synthase A [Roseobacter denitrificans OCh 114]
gi|122972811|sp|Q168C1.1|TRUA_ROSDO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|109455467|gb|ABG31672.1| tRNA pseudouridine synthase A [Roseobacter denitrificans OCh 114]
Length = 260
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 153/301 (50%), Gaps = 49/301 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F G Q+Q T+ G +E A K P +I+ + RTDAGVHA +
Sbjct: 1 MHRYALKVEYNGAPFVGWQRQKEHPTIQGAIERALGKIAPGPHTIAAAGRTDAGVHAIAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ER D + A+N+ L+ I +T V +++HARF A++
Sbjct: 61 VAHCDLER-----------DWDPFRLSEALNYHLKP-APIAITACTAVDAEWHARFSARQ 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + +K W V ++LD+ AM+EA +L+G HDF++FR++ CQA SP
Sbjct: 109 RQYLFRILCRRAP-ATHQKGLVWQVKQKLDVTAMREAAALLIGQHDFTTFRSTICQAESP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V+EV D+P +G R
Sbjct: 168 VKTLDRLDVNEV-----------DTP--------------------YG-----REIHFDV 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G T DV R L + A P+ P GL L V YD
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPPHGLYLAHVVYDR 251
Query: 357 P 357
P
Sbjct: 252 P 252
>gi|339502760|ref|YP_004690180.1| tRNA pseudouridine synthase A [Roseobacter litoralis Och 149]
gi|338756753|gb|AEI93217.1| tRNA pseudouridine synthase A [Roseobacter litoralis Och 149]
Length = 275
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/312 (35%), Positives = 155/312 (49%), Gaps = 49/312 (15%)
Query: 46 TVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSS 105
T+ ++ + RY + VEY G F G Q+Q TV G +E+A K P +I+ +
Sbjct: 9 TLASELARPTPMHRYALKVEYHGAPFVGWQRQKEHSTVQGAIEQALGKIAPAPHTIAAAG 68
Query: 106 RTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVP 165
RTDAGVHA + V H D+ R D + A+N+ L+ I +T V
Sbjct: 69 RTDAGVHAIAQVAHCDLVR-----------DWDPFRLSEALNYHLKP-APIAITACTVVD 116
Query: 166 SDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSS 225
+D+HARF A++R Y +RIL P + ++ W V + LD+ AM+EA +L+G HDF++
Sbjct: 117 ADWHARFSARQRQYLFRILCRRAP-ATHQRGLVWQVKQNLDVAAMREAAALLIGQHDFTT 175
Query: 226 FRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGI 285
FR++ CQA SP++TLD L VSEV + P G F +
Sbjct: 176 FRSTICQAESPVKTLDRLDVSEVET-------------------------PYGREIHFDV 210
Query: 286 RKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPAC 345
RARSFL++QVR VG L+ VG G T DV R L + A P+ P
Sbjct: 211 -----------RARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPPY 259
Query: 346 GLSLGFVKYDLP 357
GL L V YD P
Sbjct: 260 GLYLAHVVYDRP 271
>gi|51474025|ref|YP_067782.1| tRNA pseudouridine synthase A [Rickettsia typhi str. Wilmington]
gi|383752799|ref|YP_005427899.1| tRNA pseudouridine synthase A [Rickettsia typhi str. TH1527]
gi|383843635|ref|YP_005424138.1| tRNA pseudouridine synthase A [Rickettsia typhi str. B9991CWPP]
gi|62901283|sp|Q68VQ6.1|TRUA_RICTY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|51460337|gb|AAU04300.1| Pseudouridine synthase [Rickettsia typhi str. Wilmington]
gi|380759442|gb|AFE54677.1| tRNA pseudouridine synthase A [Rickettsia typhi str. TH1527]
gi|380760282|gb|AFE55516.1| tRNA pseudouridine synthase A [Rickettsia typhi str. B9991CWPP]
Length = 245
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT FSG Q+Q +V +LEEA +KF G+ V++ S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTHFSGWQRQAGVLSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H D+ + L P+ + +A+N+F++ + V + V ++FHARF A
Sbjct: 61 IAHFDLSK--------YLEPYK---IIKAINYFVRPYA-VGVWNCELVSNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P SV + +R W ++ LD+ AMQ+A L+G HDF+SFR+S CQ+ SP
Sbjct: 109 RHYIYRIVNRTYP-SVIDLNRVWWISAPLDVLAMQQAATYLLGKHDFTSFRSSSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL E++ I K++ ++
Sbjct: 168 IKTLTEIN----------------------------------------IIKEYEEIKLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL++ VR IVG L VG V ++ +L AK A P APA GL F+K
Sbjct: 188 SAPSFLHYMVRNIVGSLVLVGKNIWQVEQIKNVLDAKDRKVAGPTAPAFGLY--FIK 242
>gi|240849747|ref|YP_002971135.1| tRNA pseudouridine synthase A [Bartonella grahamii as4aup]
gi|240266870|gb|ACS50458.1| tRNA pseudouridine synthase A [Bartonella grahamii as4aup]
Length = 247
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 150/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q TV G LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAKLHTVQGALEQAIFSFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD I P VR A+N L+ +G+ I + +V+ VP DF ARF A +R
Sbjct: 63 HVDF--IKNWHP---------HTVRDALNALLRKQGEAISILNVQNVPDDFDARFSAVKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYIFKILNRRSPPALNAK-RVWWLPKPLNAEAMHEAAQKLVGEHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTLD L + G +F + A+
Sbjct: 171 RTLDRLDIQR------------------------------EGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L AK +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKHCGVVAPPSGLYLTKVEY 247
>gi|319404987|emb|CBI78590.1| tRNA pseudouridine synthase A [Bartonella sp. AR 15-3]
Length = 247
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G+ ++G Q+Q + RT+ G +E+A F GQ ++I+ + RTDAGVHA
Sbjct: 1 MARFKLTLEYDGSNYAGWQRQKSLRTIQGSIEKAVFHFSGQKLTITTAGRTDAGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQ 175
V H+D E+ ++ +VR A+N LQ +G DI+V +V+ VP +F ARF A
Sbjct: 61 VAHIDFEK-----------HWNTHIVRDALNAHLQKQGEDIVVLNVQSVPDNFDARFCAT 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y ++IL+ P ++ K R W + + LD AM +A + LVG HDF++FR++ CQA S
Sbjct: 110 KRHYLFKILNRRSPPALNAK-RVWWLPKPLDADAMHKAAQRLVGQHDFTTFRSAHCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTL+ L I+++ +
Sbjct: 169 PVRTLERL----------------------------------------DIQREGEEIVLY 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+ARSFL+HQ+R G L VG G T D+E L AK +AP GL L V Y
Sbjct: 189 AQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHAKNRARCGVVAPPSGLYLIKVDY 247
>gi|222147430|ref|YP_002548387.1| tRNA pseudouridine synthase A [Agrobacterium vitis S4]
gi|254789600|sp|B9JQX0.1|TRUA_AGRVS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|221734420|gb|ACM35383.1| tRNA pseudouridine synthase A [Agrobacterium vitis S4]
Length = 259
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 155/304 (50%), Gaps = 55/304 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT + G Q+Q N +V G LE A G+ V+I + RTD+GVHA+
Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQDNGPSVQGALEAAVLGLTGETVAIRGAGRTDSGVHASGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V HVD+ R + +P +R A+N H Q+ I + VP F ARF A
Sbjct: 61 VAHVDLLR-------QWIP----YKLRNALNAHLAQAGQAISILAAEAVPDAFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y YRI+S P L++ E +RAW V++ LD AM A ++LVG HDF++FR+ CQA S
Sbjct: 110 KRHYLYRIMSRPSRLAL-EANRAWWVSKPLDHEAMHAAAQMLVGNHDFTTFRSVHCQAIS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L VS N D E+
Sbjct: 169 PVRTLDRLDVSR----------NGD------------------------------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G++T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ASAQSFLHNQIRSFAGTLKMAGEGKMTPEDVRAALEARDRKACGPVAPPQGLY--FLQVD 246
Query: 356 LPED 359
P D
Sbjct: 247 YPTD 250
>gi|157804248|ref|YP_001492797.1| tRNA pseudouridine synthase A [Rickettsia canadensis str. McKiel]
gi|166228759|sp|A8F079.1|TRUA_RICCK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157785511|gb|ABV74012.1| tRNA pseudouridine synthase A [Rickettsia canadensis str. McKiel]
Length = 245
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 148/291 (50%), Gaps = 53/291 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGIMSVQQILEEAIYKFSGEQVVLFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L H + A+N+F + ++V + P++FHARF A
Sbjct: 61 VAHFDLSK--------NLETHK---IITAINYFARPY-SVIVWNCEMAPNNFHARFSAVS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P SV +DR W ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RHYIYRILNRPYS-SVINRDRVWWISSPLDVLAMQKAATYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
A SFL+H VR IVG L VG ++ +L+ K AA P APA GL
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNVWQAEYIKELLEVKDRKAAGPTAPASGL 238
>gi|265985146|ref|ZP_06097881.1| tRNA pseudouridine synthase A [Brucella sp. 83/13]
gi|264663738|gb|EEZ33999.1| tRNA pseudouridine synthase A [Brucella sp. 83/13]
Length = 251
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 150/300 (50%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V G +E+AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEELTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ I + +V F ARF A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V RAW V ++LD AM EA + L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-NYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MVEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLVGVDYAFP 250
>gi|402702928|ref|ZP_10850907.1| tRNA pseudouridine synthase A [Rickettsia helvetica C9P9]
Length = 245
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 152/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTGLAGWQRQAGVISVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + V ++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCEMVLNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RHYIYRIINRPYP-SVIDLNRAWWISSPLDVLAMQKAATYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL+ I K++ ++
Sbjct: 168 IKTLTELN----------------------------------------IVKENEEIKLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L V ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVRKNVWQAEYIKEVLEAKDRKAAGPTAPASGLY--FVK 242
>gi|319407940|emb|CBI81594.1| tRNA pseudouridine synthase A [Bartonella schoenbuchensis R1]
Length = 247
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q RT+ G +E+A F G+ ++I + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAGLRTIQGAIEQAIFNFSGEKLTIVTAGRTDAGVHAIEQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD + ++ V A+N LQ +G +I V +V+ VP FHARF A +R
Sbjct: 63 HVDFTK-----------NWHANTVHNALNAHLQQQGENIAVLNVQNVPDSFHARFCATKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 YYLFKILNRRSPPALNVK-RVWWLPKHLNADAMHEAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVYR------------------------------KGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VGTG+ T D+E L AK +AP GL L + Y
Sbjct: 191 ARSFLHHQIRSFAGSLVKVGTGQWTAQDLEAALNAKDRARCGMVAPPSGLYLMKIDY 247
>gi|451941375|ref|YP_007462012.1| tRNA pseudouridine synthase A [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451900762|gb|AGF75224.1| tRNA pseudouridine synthase A [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 247
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 150/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q TV G LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELHTVQGTLEQAIFCFCGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD E+ S VR A+N LQ +G+ + +V VP F ARF A +R
Sbjct: 63 HVDFEK-----------NWGSHTVRDALNAHLQKQGESTSILEVENVPDSFDARFSAIKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRRSPPALNAK-RVWWLPKPLNAEAMHEAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVQRE------------------------------GEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T +D+E L AK T +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGVGRWTANDLEAALHAKDRTRCGVVAPPSGLYLTKVEY 247
>gi|114706822|ref|ZP_01439722.1| tRNA pseudouridine synthase A [Fulvimarina pelagi HTCC2506]
gi|114537770|gb|EAU40894.1| tRNA pseudouridine synthase A [Fulvimarina pelagi HTCC2506]
Length = 261
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 152/298 (51%), Gaps = 52/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT ++G Q+Q + +V V+EEA H+ G + + RTD+GVHA
Sbjct: 1 MPRYKLTVEYDGTPYAGWQRQADEPSVQAVIEEAAHRLCGTNPVLFGAGRTDSGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + VR A+N ++ E +++ V +DF ARF A++
Sbjct: 61 VAHIDLPKA-----------YAGGTVRDALNAHMRDE-PVVILSAEEVGADFDARFSARK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + P ++ + + W V++ LD AM EA +VL G HDF++FR++ CQA +P
Sbjct: 109 RWYRYRIFNRRAPAAIL-RGKVWWVSKLLDTEAMHEAAQVLAGTHDFTTFRSTHCQAKNP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IRTL++L V +R ++A
Sbjct: 168 IRTLEKLEV---------------------------------------VRANGEEIHIVA 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+SFL++Q+R G LK VG G T +DV LKAK TA P+AP GL L ++Y
Sbjct: 189 MAQSFLHNQIRSFAGTLKLVGEGRWTATDVSEALKAKDRTACGPVAPPYGLYLTAIEY 246
>gi|379023388|ref|YP_005300049.1| tRNA pseudouridine synthase A [Rickettsia canadensis str. CA410]
gi|376324326|gb|AFB21567.1| tRNA pseudouridine synthase A [Rickettsia canadensis str. CA410]
Length = 245
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 148/291 (50%), Gaps = 53/291 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGIMSVQQILEEAIYKFSGEQVVLFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L H + A+N+F + ++V + P++FHARF A
Sbjct: 61 VAHFDLSK--------NLETHK---IITAINYFARPY-SVIVWNCEMAPNNFHARFSAVS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P SV +DR W ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RHYTYRILNRPYS-SVINRDRVWWISSPLDVLAMQKAATYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
A SFL+H VR IVG L VG ++ +L+ K AA P APA GL
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNVWQAEYIKELLEVKDRKAAGPTAPASGL 238
>gi|182677494|ref|YP_001831640.1| tRNA pseudouridine synthase A [Beijerinckia indica subsp. indica
ATCC 9039]
gi|238691224|sp|B2IEW0.1|TRUA_BEII9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|182633377|gb|ACB94151.1| tRNA pseudouridine synthase A [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 260
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 154/310 (49%), Gaps = 55/310 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F G Q+Q N +V V+E A G PV I + RTDAGVHA++
Sbjct: 1 MPRYKLTVEYDGASFVGWQRQKNGLSVQEVIETALLAINGAPVGIRGAGRTDAGVHASAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R E P V+R A+N ++ + V VP F ARF A
Sbjct: 61 VAHADLAR-------EWRP----DVLRDALNAHMRP-ALVAVVAAEPVPETFDARFSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL+ FE RAW V LD RAM EA +VL G HDFS+FRA+ CQA SP
Sbjct: 109 RHYLYRIINRRAPLT-FEAGRAWLVKRRLDARAMHEAAQVLTGRHDFSTFRAAECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IRTL+ L V V G + E+ A
Sbjct: 168 IRTLERLDVQAV------------------------------GDLI----------EIRA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L+ VG+G+ + D+ L+A +APA GL L V Y
Sbjct: 188 SARSFLHHQVRSMVGSLEMVGSGKWSAGDLRAALEACDRRRCGMVAPAAGLYLTGVDY-- 245
Query: 357 PEDDQTDAAE 366
PE+ + A+
Sbjct: 246 PEEGEEKGAQ 255
>gi|15604687|ref|NP_221205.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. Madrid E]
gi|3861382|emb|CAA15281.1| PSEUDOURIDYLATE SYNTHASE I (truA) [Rickettsia prowazekii str.
Madrid E]
Length = 253
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 157/304 (51%), Gaps = 55/304 (18%)
Query: 50 VMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
+ S + + RY I +EY+GT F+G Q+Q +V +LEEA +KF + V++ S RTDA
Sbjct: 2 IKSQDDSMYRYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDA 61
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA V H D+ + L P+ + +A+N+F++ D+ V + V ++FH
Sbjct: 62 GVHAIGQVAHFDLSK--------YLEPYK---IIKAINYFVRPY-DVGVWNCELVSNNFH 109
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
ARF A R Y YRI++ P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFR+S
Sbjct: 110 ARFSAISRHYIYRIINRTYP-SVIDFNRAWWISSPLDILAMQKAAAYLLGKHDFTSFRSS 168
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
CQ+ SPI+TL E++ I K++
Sbjct: 169 SCQSKSPIKTLTEIN----------------------------------------IIKEY 188
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
++ A SFL++ VR IVG L VG ++ +L A+ A P APA GL
Sbjct: 189 EEIKLYISAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLY- 247
Query: 350 GFVK 353
F+K
Sbjct: 248 -FIK 250
>gi|427427361|ref|ZP_18917405.1| tRNA pseudouridine synthase A [Caenispirillum salinarum AK4]
gi|425883287|gb|EKV31963.1| tRNA pseudouridine synthase A [Caenispirillum salinarum AK4]
Length = 250
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 147/305 (48%), Gaps = 57/305 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G F G Q+Q N +V LE A + + S RTD+GVHA
Sbjct: 1 MPRFKLTIEYDGGPFVGWQRQANGLSVQEALETAVAGYCQVDAVVHGSGRTDSGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDS-SVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V HVD LP HD VR A+N L+ I + V V DFHARF A+
Sbjct: 61 VAHVD------------LPRHDPPGKVRDALNAHLRRH-PISIRQVEQVDEDFHARFSAR 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
ER+Y YRIL+ P + R W V +LD AM +A ++LVG HDFS+FRA CQA S
Sbjct: 108 ERSYVYRILNRRSP-PALDAGRVWWVGADLDAGAMHDAGQILVGHHDFSTFRAKECQAQS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P++TLDEL V+ ++ +
Sbjct: 167 PVKTLDELAVT----------------------------------------REGEEVRLF 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RARSFL+HQVR + G LK VG G+ T D++R L A+ A P AP GL V+Y
Sbjct: 187 VRARSFLHHQVRNMAGALKLVGEGKWTADDLQRALDARDRAAGGPTAPPQGLYFLSVRY- 245
Query: 356 LPEDD 360
PE D
Sbjct: 246 -PEHD 249
>gi|444311606|ref|ZP_21147211.1| tRNA pseudouridine synthase A [Ochrobactrum intermedium M86]
gi|443485036|gb|ELT47833.1| tRNA pseudouridine synthase A [Ochrobactrum intermedium M86]
Length = 251
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 149/300 (49%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V +E AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQNAIELAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + D+ VR AVN H + ++ + + +V F ARF A+ R
Sbjct: 63 HVDLTK-----------DWDAGKVRDAVNAHLVMADERVSILNVEKTTDTFDARFSARSR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL++ + RAW V + LD AM EA K L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAI-DYQRAWWVQKRLDADAMHEAAKRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MIEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLIGVDYAFP 250
>gi|395783641|ref|ZP_10463490.1| tRNA pseudouridine synthase A [Bartonella melophagi K-2C]
gi|395425763|gb|EJF91923.1| tRNA pseudouridine synthase A [Bartonella melophagi K-2C]
Length = 247
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q T+ G +E+A F G+ ++I + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAGLHTIQGAIEQAIFNFSGEKLTIITAGRTDAGVHAIGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD + ++ V A+N LQ +G +I V +V+ VP +FHARF A +R
Sbjct: 63 HVDFTK-----------NWHANTVHNALNAHLQQQGENIAVLNVQNVPDNFHARFCATKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 YYLFKILNRRSPPALNIK-RVWWLPKHLNADAMHEAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVYR------------------------------KGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VGTG+ T D+E L AK +AP GL L + Y
Sbjct: 191 ARSFLHHQIRSFAGSLVKVGTGQWTAQDLEAALNAKNRARCGMVAPPSGLYLMKIDY 247
>gi|395792604|ref|ZP_10472028.1| tRNA pseudouridine synthase A [Bartonella vinsonii subsp. arupensis
Pm136co]
gi|423713265|ref|ZP_17687525.1| tRNA pseudouridine synthase A [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395423306|gb|EJF89501.1| tRNA pseudouridine synthase A [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395432161|gb|EJF98150.1| tRNA pseudouridine synthase A [Bartonella vinsonii subsp. arupensis
Pm136co]
Length = 247
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 150/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q TV G LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELHTVQGALEQAIFCFCGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD E+ S VR A+N LQ +G+ I + +V VP F ARF A +R
Sbjct: 63 HVDFEK-----------NWGSHTVRDALNAHLQKQGESISILNVENVPDSFDARFSAVKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ AM EA + LVG HDF++FR++ CQA +PI
Sbjct: 112 HYLFKILNRRSPPALNAK-RVWWLPKPLNAEAMHEAAQKLVGQHDFTTFRSAHCQAKNPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVQRE------------------------------GEEIF----------LYAK 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T +D+E L AK +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTANDLEAALHAKDRKRCGVVAPPSGLYLTKVEY 247
>gi|395767511|ref|ZP_10448044.1| tRNA pseudouridine synthase A [Bartonella doshiae NCTC 12862]
gi|395413874|gb|EJF80327.1| tRNA pseudouridine synthase A [Bartonella doshiae NCTC 12862]
Length = 247
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q T+ LE+A F Q ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELPTIQRALEQAIFHFCSQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD E+ + VR A+N LQ +G +I + +V+ VP DF ARF A +R
Sbjct: 63 HVDFEK-----------NWHTHTVRDALNAHLQKQGENISILNVQNVPDDFDARFSAVKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRRSPPALNAK-RVWWLPKPLNAEAMHEAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVQR------------------------------EGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T+ D+E L AK T +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTIQDLEAALHAKDRTRCGVVAPPSGLYLTKVEY 247
>gi|395778963|ref|ZP_10459474.1| tRNA pseudouridine synthase A [Bartonella elizabethae Re6043vi]
gi|423714811|ref|ZP_17689035.1| tRNA pseudouridine synthase A [Bartonella elizabethae F9251]
gi|395417138|gb|EJF83490.1| tRNA pseudouridine synthase A [Bartonella elizabethae Re6043vi]
gi|395431030|gb|EJF97058.1| tRNA pseudouridine synthase A [Bartonella elizabethae F9251]
Length = 247
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 150/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q T+ G LE+ +F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELHTIQGALEQVIFRFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD K P S VR A+N L+ +G+ I + +V VP +F ARF A +R
Sbjct: 63 HVD---FIKNWP--------SYTVRDALNALLRQQGEAISILNVENVPDNFDARFSAIKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + LD AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 YYLFKILNRRSPPALNAK-RVWWLPKPLDAEAMHEAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + AR
Sbjct: 171 RTLECLDVQR------------------------------EGEEIF----------LYAR 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L AK +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGVVAPPSGLYLTKVEY 247
>gi|395782231|ref|ZP_10462635.1| tRNA pseudouridine synthase A [Bartonella rattimassiliensis 15908]
gi|395419170|gb|EJF85471.1| tRNA pseudouridine synthase A [Bartonella rattimassiliensis 15908]
Length = 247
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 149/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ I +EY G+ ++G Q+Q T+ G LE+ F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKITLEYDGSNYAGWQRQEKLPTIQGTLEQVIFAFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD E+ VR A+N L+ +G+ I + +V+ VP DF ARF A +R
Sbjct: 63 HVDFEK-----------NWHLHTVRDALNALLRKQGEAISILNVQNVPDDFDARFSAVKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K W + + L+ AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 YYLFKILNRRSPPTLSAK-HVWWIPKPLNAEAMHEAAQKLVGKHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVRR------------------------------EGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VGTG T D+E L AK +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGTGRWTTQDLEAALHAKDRKRCGVVAPPSGLYLTKVEY 247
>gi|83594681|ref|YP_428433.1| pseudouridylate synthase [Rhodospirillum rubrum ATCC 11170]
gi|386351446|ref|YP_006049694.1| pseudouridylate synthase [Rhodospirillum rubrum F11]
gi|123725839|sp|Q2RNZ9.1|TRUA_RHORT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|83577595|gb|ABC24146.1| Pseudouridylate synthase [Rhodospirillum rubrum ATCC 11170]
gi|346719882|gb|AEO49897.1| pseudouridylate synthase [Rhodospirillum rubrum F11]
Length = 278
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 154/315 (48%), Gaps = 56/315 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY G + G Q+Q N T+ LEEA + G + S RTD+GVHA V
Sbjct: 3 RYRLTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATRVHGSGRTDSGVHALGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H+D+ R + ++ V +A+N L+ + I V D V DFHARF A+ER+
Sbjct: 63 HLDLPRA-----------YGAATVMKALNAHLRPQ-PIAVIDAAEVAEDFHARFSAEERS 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRIL+ P ++ R W V ++ M EA +VLVG HDFSSFRA+ CQA+SP++
Sbjct: 111 YRYRILNRIAP-PTLDQGRVWWVARPMEAAIMDEAAQVLVGRHDFSSFRAAECQADSPVK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL EL V+ V G + V ARA
Sbjct: 170 TLSELRVTRV------------------------------GDEI----------HVFARA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPE 358
RSFL+HQVR +VG L VG G T + L+A +AA P AP GL F++ P
Sbjct: 190 RSFLHHQVRNMVGTLALVGDGRWTADRLRAALEACDRSAAGPTAPPDGLY--FLRVRFPG 247
Query: 359 DDQTDA-AESLETCP 372
+ A A LE P
Sbjct: 248 ETAAPAKAGPLEAAP 262
>gi|383486834|ref|YP_005404514.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. GvV257]
gi|383488250|ref|YP_005405929.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str.
Chernikova]
gi|383489095|ref|YP_005406773.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str.
Katsinyian]
gi|383489934|ref|YP_005407611.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. Dachau]
gi|383500072|ref|YP_005413433.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500907|ref|YP_005414267.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. RpGvF24]
gi|386082754|ref|YP_005999333.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. Rp22]
gi|24212681|sp|Q9ZCA3.2|TRUA_RICPR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|292572520|gb|ADE30435.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. Rp22]
gi|380757199|gb|AFE52436.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. GvV257]
gi|380758604|gb|AFE53840.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. RpGvF24]
gi|380761129|gb|AFE49651.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str.
Chernikova]
gi|380761974|gb|AFE50495.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str.
Katsinyian]
gi|380762818|gb|AFE51338.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380763657|gb|AFE52176.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. Dachau]
Length = 245
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT F+G Q+Q +V +LEEA +KF + V++ S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L P+ + +A+N+F++ D+ V + V ++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPYK---IIKAINYFVRPY-DVGVWNCELVSNNFHARFSAIS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFR+S CQ+ SP
Sbjct: 109 RHYIYRIINRTYP-SVIDFNRAWWISSPLDILAMQKAAAYLLGKHDFTSFRSSSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL E++ I K++ ++
Sbjct: 168 IKTLTEIN----------------------------------------IIKEYEEIKLYI 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL++ VR IVG L VG ++ +L A+ A P APA GL F+K
Sbjct: 188 SAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLY--FIK 242
>gi|91204875|ref|YP_537230.1| tRNA pseudouridine synthase A [Rickettsia bellii RML369-C]
gi|157826493|ref|YP_001495557.1| tRNA pseudouridine synthase A [Rickettsia bellii OSU 85-389]
gi|123266250|sp|Q1RKH3.1|TRUA_RICBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166228758|sp|A8GUM4.1|TRUA_RICB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91068419|gb|ABE04141.1| tRNA pseudouridine synthase A [Rickettsia bellii RML369-C]
gi|157801797|gb|ABV78520.1| tRNA pseudouridine synthase A [Rickettsia bellii OSU 85-389]
Length = 245
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 154/299 (51%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I+VEY+GT +G Q+Q +V +LEEA +KF G+ V++ S RTDAGVHA
Sbjct: 1 MYRYKISVEYLGTNLAGWQRQSGVMSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H D+ + P+ + RA+N+F + + V + V ++FHARF A
Sbjct: 61 IAHFDLSK--------YFEPYK---IIRAINYFTRPY-IVGVCNCELVDNNFHARFSAIA 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P P SV + DR W ++ LD+ AMQ++ L+G H+F+SFRAS CQ+ SP
Sbjct: 109 RHYVYRILNRPYP-SVIDFDRVWWISVPLDVSAMQKSSLYLLGKHNFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL +L I K++ ++
Sbjct: 168 IKTLTKL----------------------------------------DIIKENEEIKLYF 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A SFL+H VR IVG L VG ++++L+ AA P APACGL F+K D
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQMQQVLEVADRKAAGPTAPACGLY--FIKAD 244
>gi|407772925|ref|ZP_11120227.1| tRNA pseudouridine synthase A [Thalassospira profundimaris WP0211]
gi|407284878|gb|EKF10394.1| tRNA pseudouridine synthase A [Thalassospira profundimaris WP0211]
Length = 248
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 149/299 (49%), Gaps = 52/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QRY VEY G + G Q Q +V V E A KF G V + +S RTDAGVHA
Sbjct: 1 MQRYKCTVEYDGRPYHGWQYQDEVISVQKVFETAIEKFAGVFVRVYVSGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D + K P E V A+NH L+ + + + + V DFHARF +++
Sbjct: 61 VVHFD---LPKYYPAEA--------VMNAINHHLKPD-PVAIKECEEVTEDFHARFSSKK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL+ FE AW V + LD+ AM EA L+G DF+SFRAS CQA SP
Sbjct: 109 RYYMYRIINRRAPLT-FEAGLAWGVYKPLDIDAMNEAAHHLIGTFDFTSFRASECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL++L V+ + L ++ +S
Sbjct: 168 IKTLEKLEVTRGIENPLEIRVHTES----------------------------------- 192
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RSFL+HQVR +VG L VG G DV+ L+AK +A P APA GL FVK D
Sbjct: 193 --RSFLHHQVRNMVGTLVLVGKGAWKPIDVKTALEAKDRSAGGPTAPADGLY--FVKVD 247
>gi|317418864|emb|CBN80902.1| tRNA pseudouridine synthase-like 1 [Dicentrarchus labrax]
Length = 285
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 167/310 (53%), Gaps = 51/310 (16%)
Query: 59 RYLIAVEYIGTRFSGSQK----QLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHA 113
RYLI +YIGT++SG K QL + V LE+A K + PVS+S+SSRTD GVHA
Sbjct: 6 RYLIFFQYIGTKYSGVVKVPPHQLPSKGVQDHLEDAIRKLMPLNPVSLSVSSRTDRGVHA 65
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
SN H D++R + LPP ++ A+N +L++E I +T+ VP DFHAR++
Sbjct: 66 LSNSAHFDLQRKNN------LPPFTEGILIEALNFYLKTE-QIRITNAHRVPDDFHARYQ 118
Query: 174 AQERTYFYRILSG-PEP--LSVFEKDRAWHV-TEELDLRAMQEACKVLVGCHDFSSFRAS 229
AQ RTY YRI G P L + E W + ELD+ AM++A +LVG HDFSSFRA
Sbjct: 119 AQSRTYVYRIALGIPNQLLLPLTELKFCWSLRNTELDVGAMRKAAALLVGNHDFSSFRAV 178
Query: 230 GCQA--NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
+ +P++ LD ++SI P G ++
Sbjct: 179 STEMAFKNPVKVLD----------------------VASIQ-------PGGSFVQSHFQR 209
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASP---MAPA 344
+ +EV +ARSFLY QVR + G L AVG G L+V ++ IL+A+ T A P +APA
Sbjct: 210 EVLFWEVTFKARSFLYKQVRRMTGALVAVGQGRLSVPQLKEILEARD-TMAYPKNLVAPA 268
Query: 345 CGLSLGFVKY 354
GL L V Y
Sbjct: 269 HGLFLTRVDY 278
>gi|297182649|gb|ADI18807.1| pseudouridylate synthase [uncultured SAR11 cluster bacterium
HF4000_37C10]
Length = 245
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 158/298 (53%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QRY I +EY GT F G Q Q N ++ VL+ A F + V ++ + RTD+GVHA +
Sbjct: 1 MQRYKIKIEYDGTPFVGWQFQKNGPSIQEVLQNAIFNFSKEKVVVTGAGRTDSGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+++ K+K LP VN + ++ + V + FHARF A++
Sbjct: 61 VAHFDLKKKIKKK--SFLP---------GVNQHIGNK-PVTVLKINKTSKKFHARFDAKK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y I++ PL++ +K++AWH+ ++LD++AM++ K+L+G HDFS+FRAS C A SP
Sbjct: 109 RTYQYTIINRQSPLAL-QKNKAWHIRKKLDVKAMKKGAKLLLGTHDFSTFRASSCGAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+T++ + V + N+D L
Sbjct: 168 IKTMENISVKK----------NKDKITLKFT----------------------------- 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+RSFL QVR +VG +K +G G+ + D ++ K+K +P APACGL L +KY
Sbjct: 189 -SRSFLQQQVRSMVGSIKYLGDGKWKLDDFKKSFKSKNRLKCAPPAPACGLYLTKIKY 245
>gi|311258299|ref|XP_003127542.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Sus scrofa]
Length = 306
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 164/306 (53%), Gaps = 44/306 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + PV ++SSRTDAGVHA
Sbjct: 13 RYLVYFQYLGTDFNGVAAVRGPQHAVGVQNYLEEAAERLNSVVPVKFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+D++R S + PP V+ A+N L+ I V VPS FHAR+ A
Sbjct: 73 SNAAHLDIQRRSGQ------PPFSPEVLTEALNTHLRHPA-IRVLQAFRVPSHFHARYAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G P+ LSVFE++R W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLATGCPRPDHLSVFERNRCWPLRADCLDVAAMQEAAQHLLGTHDFSAFQSTG 185
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
A SP+RTL VS + SS L +P G + R
Sbjct: 186 SPATSPVRTLRRASVSP--------------------EPSSPLVLP-------GESRGLR 218
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA--ASPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G LT + V+ IL+++ S +APA GL
Sbjct: 219 FWSLEFESQSFLYRQVRRMTAVLVAVGLGALTPAQVKMILESRDPLGRHQSRVAPAHGLF 278
Query: 349 LGFVKY 354
L V Y
Sbjct: 279 LKSVLY 284
>gi|153008677|ref|YP_001369892.1| tRNA pseudouridine synthase A [Ochrobactrum anthropi ATCC 49188]
gi|166228741|sp|A6WYK9.1|TRUA_OCHA4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|151560565|gb|ABS14063.1| tRNA pseudouridine synthase A [Ochrobactrum anthropi ATCC 49188]
Length = 251
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 148/300 (49%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V +E AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQNAIELAFKKFCGEDLTLSAAGRTDAGVHATAQVV 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ + + +V F ARF A+ R
Sbjct: 63 HVDLTK-----------DWGAGKVRDAVNAHLVMADERVSILNVERTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V + LD AM EA K L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKRLDAEAMHEAAKRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V I N + E+
Sbjct: 171 KTLDRLDV---------------------IRNGDYV-------------------EMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+AK A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAKDRKACGQVAPPYGLYLIGVDYAFP 250
>gi|40062661|gb|AAR37582.1| tRNA pseudouridine synthase A [uncultured marine bacterium 313]
Length = 245
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 157/298 (52%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QRY I +EY GT F G Q Q N +++ VL+ A F + V ++ + RTD+GVHA +
Sbjct: 1 MQRYKIKIEYDGTPFVGWQFQKNGQSIQEVLQNAIFNFSKEKVVVTGAGRTDSGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+++ K+K LP + + + V V + FHARF A++
Sbjct: 61 VAHFDLKKKIKKK--SFLPGINQHIGNKPVT----------VLKINKTSKKFHARFDAKK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y I++ PL++ +K++AWH+ ++LD+RAM++ K+L+G HDFS+FRAS C A SP
Sbjct: 109 RTYQYTIINRQSPLTL-QKNKAWHIRKKLDVRAMKKGAKLLLGTHDFSTFRASSCGAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+T++ + + + N+D L I
Sbjct: 168 IKTMENISIKK----------NKDKITLKFI----------------------------- 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+RSFL QVR +VG +K +G G+ + D ++ K+K +P APA GL L +KY
Sbjct: 189 -SRSFLQQQVRSMVGCIKYLGDGKWKLEDFKKSFKSKCRLECAPPAPASGLYLAKIKY 245
>gi|393766409|ref|ZP_10354965.1| tRNA pseudouridine synthase A [Methylobacterium sp. GXF4]
gi|392728190|gb|EIZ85499.1| tRNA pseudouridine synthase A [Methylobacterium sp. GXF4]
Length = 250
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 146/298 (48%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY GT F G Q+Q + TV G +E A +F G+ ++ + RTDAGVHA
Sbjct: 1 MPRYKLVIEYDGTPFCGWQRQSDEATVQGAIEAAVTRFSGEDARLTCAGRTDAGVHAIHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + + VR A+N L+ + + V VP F AR A
Sbjct: 61 VAHLDLAKDWR-----------TDTVRDAINAHLRPQ-PVAVLSAEIVPPSFDARHSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + + WHV LD AM +A + LVG HDFS+FRA+ CQANSP
Sbjct: 109 RHYRYRILNRRSP-AALTRAHVWHVPWPLDPDAMHDAAQRLVGLHDFSAFRAAECQANSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD+L V+ + AL H V
Sbjct: 168 VRTLDQLDVAR-TTMAL-----------------------------------HEEIVVTT 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L G G L+ DV IL + P+APACGL+ V Y
Sbjct: 192 CARSFLHHQVRAMVGTLMLAGCGRLSGDDVADILASGEKRRCGPLAPACGLTFVGVDY 249
>gi|319780351|ref|YP_004139827.1| tRNA pseudouridine synthase A [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166239|gb|ADV09777.1| tRNA pseudouridine synthase A [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 256
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ F+G Q Q + +V +E+A KF G+ + + + RTDAGVHA + V
Sbjct: 3 RFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAIRLRAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD + K P S VR AVN LQ+ G I + V F ARF A R
Sbjct: 63 HVD---LVKAWP--------SDKVRDAVNAHLQAAGARIAILKATVVSDSFDARFSAIGR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRIL+ P + +K + W V + LD AM EA KVL+G HDF++FR++ CQANSPI
Sbjct: 112 HYLYRILNRRAP-AALDKGKVWWVPKRLDAGAMHEAAKVLLGRHDFTTFRSTQCQANSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L VS ++ EV A
Sbjct: 171 RTLERLDVS----------------------------------------RQGDMIEVRAS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL++QVR +VG LK VG G + +D++ L+A+ A +AP GL L V Y
Sbjct: 191 ARSFLHNQVRSMVGSLKRVGDGGWSAADLKTALEARDRAACGQVAPPDGLFLTGVDY 247
>gi|126725547|ref|ZP_01741389.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2150]
gi|126704751|gb|EBA03842.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2150]
Length = 265
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 154/310 (49%), Gaps = 55/310 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q +TV G +E A K I+ + RTDAGVHA
Sbjct: 1 MPRYALKIEYHGAPFAGWQRQPELQTVQGAIEAAIRKLEAGNAGITAAGRTDAGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRC--VPSDFHARFRA 174
V HVD+ + D + A+NH L+ + V V C V DFHARF A
Sbjct: 61 VAHVDMAK-----------SWDLFRLTEAINHHLKP---LPVAIVACAQVDDDFHARFGA 106
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
ER Y + +++ L+V ++ W V + LDL M+E L+G HDF++FR++ CQA+
Sbjct: 107 LERQYLFSVVAR-RSLAVHDQGLVWQVRQPLDLARMKEGAAHLLGRHDFTTFRSTKCQAD 165
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP+RTLDEL + E+ R + +E
Sbjct: 166 SPVRTLDELSIREIA------------------------------------RPVGQEFEF 189
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR VG L+ VG G + ++V +L+A TA P+AP GL L V Y
Sbjct: 190 TIRARSFLHNQVRSFVGTLEPVGAGWVHPNEVGEMLRAADRTACGPVAPPQGLYLKHVVY 249
Query: 355 DLPEDDQTDA 364
PED DA
Sbjct: 250 --PEDPFKDA 257
>gi|418940393|ref|ZP_13493758.1| tRNA pseudouridine synthase A [Rhizobium sp. PDO1-076]
gi|375052807|gb|EHS49209.1| tRNA pseudouridine synthase A [Rhizobium sp. PDO1-076]
Length = 251
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 154/305 (50%), Gaps = 55/305 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q+Q N +V LE+A G+ V I + RTD+GVHA
Sbjct: 1 MPRFRLCVEYDGTPYVGWQRQDNGASVQSALEKAILALSGETVVIRGAGRTDSGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ R + +P +R A+N L G+ + V +VR VP DF ARF A
Sbjct: 61 VVHADLSR-------DWVP----DKLRNALNAHLGLAGERVAVIEVRAVPDDFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S P L++ E RAW V + LD AM EA + LVG HDF++FR+ CQA S
Sbjct: 110 RRHYLYRIISRPARLAL-EAQRAWWVPKPLDHLAMHEAAQQLVGHHDFTTFRSVHCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L VS G + E+
Sbjct: 169 PMRTLDRLDVSRT------------------------------GDLI----------EIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G++T DV L+++ A P+AP GL F+K D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKMTPEDVRAALESRNRAACGPVAPPEGLF--FMKVD 246
Query: 356 LPEDD 360
P D+
Sbjct: 247 YPGDE 251
>gi|417858749|ref|ZP_12503806.1| tRNA pseudouridine synthase A [Agrobacterium tumefaciens F2]
gi|338824753|gb|EGP58720.1| tRNA pseudouridine synthase A [Agrobacterium tumefaciens F2]
Length = 266
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 150/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q+Q N +V G LE A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTPYFGWQRQDNGPSVQGALEAAVRSLTGETVSIRGAGRTDSGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ R D +R A+N H ++ + V DV V DF ARF A
Sbjct: 61 VIHADLSR-----------AWDPYKLRNALNAHLAMAKEAVSVLDVAAVTEDFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ L++ E RAW V++++D M EA ++LVG HDF++FR+ CQANS
Sbjct: 110 RRHYLYRIICRKSRLAL-EHKRAWWVSKDMDHERMHEAAQMLVGRHDFTTFRSVHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V M NG E+
Sbjct: 169 PVRTLDRLDV-----------------------------MRNGD-----------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G +T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGTMTPEDVRAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|403529997|ref|YP_006664526.1| tRNA pseudouridine synthase A [Bartonella quintana RM-11]
gi|403232069|gb|AFR25812.1| tRNA pseudouridine synthase A [Bartonella quintana RM-11]
Length = 247
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 150/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q T+ LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELHTIQSALEQAIFHFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD + + VR A+N +LQ +G +I V +V+ VP F ARF A +R
Sbjct: 63 HVD-----------FIKNWQTYTVRDALNAYLQKQGEEIAVLNVQNVPDSFDARFSAIKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L++ AM +A + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRLSPPALNIK-RVWWIPKPLNVDAMHQAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V + G +F + A+
Sbjct: 171 RTLERLDVYK------------------------------EGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L AK +AP GL L V Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGMVAPPSGLYLTQVDY 247
>gi|312113444|ref|YP_004011040.1| tRNA pseudouridine synthase A [Rhodomicrobium vannielii ATCC 17100]
gi|311218573|gb|ADP69941.1| tRNA pseudouridine synthase A [Rhodomicrobium vannielii ATCC 17100]
Length = 245
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 148/298 (49%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY GT FSG Q Q N R+V L A +F G + RTDAGVHA
Sbjct: 1 MPRYKITIEYDGTPFSGWQMQANGRSVQDHLARAIERFTGVRAIPRGAGRTDAGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ER R P E VR A+N L+ +++ V F ARF A+
Sbjct: 61 VAHVDLER---RWPPET--------VRNALNFHLRP-APMVILACEEVDETFDARFSAKA 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ ++DRAWH+ LD AMQE + L+G HDF++FRAS CQA SP
Sbjct: 109 RHYLYRIVTRRSPLAL-DRDRAWHIGVPLDAEAMQEGARHLLGHHDFTTFRASQCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L V + G +VF +
Sbjct: 168 LRTLDTLTVR------------------------------SEGESVF----------IAT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL++QVR + G LK VG G+ + L+A+ A +APACGL V Y
Sbjct: 188 SARSFLHNQVRSMAGSLKLVGEGKWQPERMREALEARDRRACGSVAPACGLYFMTVDY 245
>gi|426400847|ref|YP_007019819.1| tRNA pseudouridine synthase A [Candidatus Endolissoclinum patella
L2]
gi|425857515|gb|AFX98551.1| tRNA pseudouridine synthase A [Candidatus Endolissoclinum patella
L2]
Length = 268
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 112/312 (35%), Positives = 153/312 (49%), Gaps = 53/312 (16%)
Query: 45 RTVTEVMSTNKR--IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSIS 102
R EV KR + R+ + +EY G + G Q+Q +V LE A F G+ V ++
Sbjct: 4 RLSLEVYWIRKRCSLSRFKLKIEYDGRPYIGWQRQSYGPSVQNFLENAVFAFSGERVEVA 63
Query: 103 LSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVR 162
+ RTD GVHA V H+ +++ K D+ V +A+N ++ E I+V
Sbjct: 64 GAGRTDKGVHATGQVAHI---QLANNK-------FDAKTVMKAINALIRPE-PIVVVAAE 112
Query: 163 CVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHD 222
V DFHARF A ER Y Y IL+ P +++ + WHV L + AMQEA LVG HD
Sbjct: 113 EVKEDFHARFSAIERCYHYEILNRYAPTALY-RGLVWHVKAPLFVEAMQEAAHCLVGHHD 171
Query: 223 FSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNV 282
F+SFRA CQ+NSP +TLD+L +
Sbjct: 172 FTSFRARQCQSNSPEKTLDQLDI------------------------------------- 194
Query: 283 FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMA 342
RK +IAR+RSFL+HQ+R +VG L VG G+ T V +L A+ +AA P A
Sbjct: 195 --FRKSENRIVIIARSRSFLHHQMRNMVGTLALVGIGKWTSCKVSEVLAARQRSAAGPTA 252
Query: 343 PACGLSLGFVKY 354
P GL L VKY
Sbjct: 253 PPDGLYLTSVKY 264
>gi|407767874|ref|ZP_11115253.1| tRNA pseudouridine synthase A [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407288587|gb|EKF14064.1| tRNA pseudouridine synthase A [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 248
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 150/299 (50%), Gaps = 52/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QRY VEY G + G Q Q +V V E A KFIGQ V + +S RTDAGVHA
Sbjct: 1 MQRYKCTVEYNGRPYHGWQFQEEVISVQQVFETALEKFIGQFVRVYVSGRTDAGVHAFGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R + + V A+NH L+ + + V D V DFHARF +++
Sbjct: 61 VVHFDLPRT-----------YPADAVMNAINHHLKPD-PVAVIDCVEVGEDFHARFSSKK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ + AW + + LD+ AM EA L+G HDF++FRAS CQA SP
Sbjct: 109 RYYMYRIVNRRAPLTI-DAGLAWGIFKPLDIDAMNEAAAYLIGTHDFTTFRASECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL++L V+ ++ P+ + S
Sbjct: 168 IKTLEKLVVTR----------SEHDPLDIRVHTES------------------------- 192
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RSFL+HQVR +VG L VG G DV+ L+A A P APA GL FVK D
Sbjct: 193 --RSFLHHQVRNMVGTLVLVGKGNWKPIDVKTALEACDRKAGGPTAPADGLY--FVKVD 247
>gi|424909302|ref|ZP_18332679.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. viciae USDA
2370]
gi|392845333|gb|EJA97855.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. viciae USDA
2370]
Length = 266
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 152/303 (50%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q+Q N +V G LE A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTPYYGWQRQENGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V HVD+ R + P+ +R A+N L G+ + V D V DF ARF A
Sbjct: 61 VVHVDLSRDWE--------PYK---LRNAINAHLAMAGEAVAVLDAASVTEDFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ L++ E RAW V+++LD M EA ++LVG HDF++FR+ CQANS
Sbjct: 110 RRHYLYRIVCRKARLAL-EHKRAWWVSKDLDHECMHEAAQMLVGRHDFTTFRSVHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NGD-----------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G +T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGTMTPEDVRAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|407782501|ref|ZP_11129713.1| tRNA pseudouridine synthase A [Oceanibaculum indicum P24]
gi|407205866|gb|EKE75832.1| tRNA pseudouridine synthase A [Oceanibaculum indicum P24]
Length = 254
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 145/298 (48%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G + G Q+Q N +V LEEA + G+ V ++ + RTDAGVHA +
Sbjct: 1 MPRYRLTLEYDGRPYVGWQRQNNGPSVQQALEEALTRLTGETVQLTAAGRTDAGVHATAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+CH+++++ +PG + R +N L+ E ++V DFHARF A
Sbjct: 61 ICHLEIDK--DIEPGRL---------RDGMNAHLRDE-SVVVLAAHYAHEDFHARFSAVG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL V ++ R W LD AM EA ++L+G HDFSSFRA CQA SP
Sbjct: 109 RAYLYRILD-RRARPVLDRGRVWWHPRPLDAGAMHEAAQLLLGTHDFSSFRAKECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L VS + G V +++
Sbjct: 168 VKTLDRLEVSRI------------------------------GEEV----------QMVV 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR G L VG G T D+ + L+A+ A P AP GL L V Y
Sbjct: 188 EARSFLHHQVRNFAGTLALVGLGTWTQDDLRQALEARDRRAGGPTAPPDGLYLTRVDY 245
>gi|404318475|ref|ZP_10966408.1| tRNA pseudouridine synthase A [Ochrobactrum anthropi CTS-325]
Length = 251
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 147/300 (49%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V +E AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQNAIELAFKKFCGEDLTLSAAGRTDAGVHATAQVV 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ + + +V F ARF A+ R
Sbjct: 63 HVDLTK-----------DWGAGKVRDAVNAHLVMADERVSILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL++ + RAW V + LD AM EA K L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAI-DYQRAWWVQKRLDAEAMHEAAKRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V I N + E+
Sbjct: 171 KTLDRLDV---------------------IRNGDYV-------------------EMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+ K A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEVKDRKACGQVAPPYGLYLIGVDYAFP 250
>gi|344924274|ref|ZP_08777735.1| tRNA pseudouridine synthase A [Candidatus Odyssella
thessalonicensis L13]
Length = 245
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 144/296 (48%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G F G Q Q TV G+L++A KF G + + S RTD GVHA V
Sbjct: 3 RYKLIIEYDGRPFCGWQLQPQVPTVQGMLQQAVKKFSGYDLLVEGSGRTDTGVHAKGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD+ R P V + +N FLQ G I + V V FHARF A+ R
Sbjct: 63 HVDLPR-----------PDAPYRVLKGLNFFLQESG-IAIVAVEEVDESFHARFSAKRRQ 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI++ PL+ FE+ AWHV + LD+ M +LVG HDF++FR+ CQA +P+R
Sbjct: 111 YIYRIINRRAPLT-FEQGLAWHVNKPLDVEKMMAGAALLVGVHDFTTFRSINCQAPNPVR 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
LD F I Q +L++I+ +
Sbjct: 170 RLDR-----------FELIQQGEEILATIE-----------------------------S 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
R+FL++QVR+++G LK +G G T+ D++ L A+ T AP GL + Y
Sbjct: 190 RAFLHNQVRIMMGSLKMIGEGRWTLKDLQEALLARDRTRGGVTAPPDGLYFSRIFY 245
>gi|163757847|ref|ZP_02164936.1| tRNA pseudouridine synthase A [Hoeflea phototrophica DFL-43]
gi|162285349|gb|EDQ35631.1| tRNA pseudouridine synthase A [Hoeflea phototrophica DFL-43]
Length = 255
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 148/298 (49%), Gaps = 51/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G+ ++G Q+Q + ++ +E A H F GQ VSI + RTDAGVHA V
Sbjct: 3 RYRLDIEYDGSGYAGWQRQDDHPSIQQAIETAIHGFCGQAVSIRGAGRTDAGVHAWGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQ-SEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+E VR A+N LQ + + + R VP DF ARF A R
Sbjct: 63 HVDLEN-----------QWSDDTVRDAINAHLQMARERVAILAAREVPEDFDARFSATRR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI+ PL V EK+RA LD AM EA + LVG HDF++FR+ CQA+SP+
Sbjct: 112 HYVYRIICRRAPL-VIEKNRALWSPRPLDAEAMHEAAQRLVGRHDFTTFRSVQCQADSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
R+LD L V+ GG + E+ A
Sbjct: 171 RSLDRLDVT------------------------------RGGFDGL--------IEIHAT 192
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL++Q+R G L+ VG G+ T DV+ L+A++ A P+A GL V YD
Sbjct: 193 ARSFLHNQIRSFAGTLRLVGEGKWTADDVQIALEARSRKACGPVAAPEGLYFRQVDYD 250
>gi|157965031|ref|YP_001499855.1| tRNA pseudouridine synthase A [Rickettsia massiliae MTU5]
gi|157844807|gb|ABV85308.1| tRNA pseudouridine synthase A [Rickettsia massiliae MTU5]
Length = 246
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 143/277 (51%), Gaps = 53/277 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G QKQ +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 2 MYRYKITIEYLGTDLAGWQKQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 61
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 62 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 110 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQATAYLLGKHDFTSFRASSCQSKSP 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 169 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK 333
A SFL+H VR IVG L VG ++ +L+AK
Sbjct: 189 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAK 225
>gi|49473750|ref|YP_031792.1| tRNA pseudouridine synthase A [Bartonella quintana str. Toulouse]
gi|51316599|sp|Q6G1G9.1|TRUA_BARQU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|49239253|emb|CAF25574.1| tRNA pseudouridine synthase A [Bartonella quintana str. Toulouse]
Length = 247
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 149/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q T+ LE+A F GQ ++ + + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELHTIQSALEQAIFHFSGQQLTTTTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD + + VR A+N +LQ +G +I V +V+ VP +F ARF A +R
Sbjct: 63 HVD-----------FIKNWQTYTVRDALNAYLQKQGEEIAVLNVQNVPDNFDARFSAIKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L++ AM +A + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRLSPPALNIK-RVWWIPKPLNVDAMHQAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVYR------------------------------EGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L AK +AP GL L V Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGMVAPPSGLYLTQVDY 247
>gi|190890088|ref|YP_001976630.1| tRNA pseudouridine synthase A [Rhizobium etli CIAT 652]
gi|190695367|gb|ACE89452.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CIAT 652]
Length = 266
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 153/303 (50%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G + G Q+Q N +V G +E A G+ VS+ + RTD+GVHA
Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + + P ++ + A+N L+ G+ + + DV VP F ARF A
Sbjct: 61 VIHADLSK--QWSPYQL---------QNAMNAHLRLAGERVSILDVEAVPEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FR++ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ S AL E+
Sbjct: 169 PVRTLDRLDVTR--SGALI--------------------------------------EIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLY--FLQVD 246
Query: 356 LPE 358
PE
Sbjct: 247 YPE 249
>gi|325291802|ref|YP_004277666.1| tRNA pseudouridine synthase A [Agrobacterium sp. H13-3]
gi|325059655|gb|ADY63346.1| tRNA pseudouridine synthase A [Agrobacterium sp. H13-3]
Length = 266
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 152/303 (50%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q+Q N +V G LE A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTPYFGWQRQDNGPSVQGALEAAVRSLTGETVSIRGAGRTDSGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V HVD+ R P+ +R A+N H ++ + V DV V DF ARF A
Sbjct: 61 VAHVDLSRD--------WAPYK---LRNALNAHLAMAKEAVSVIDVTAVTEDFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ L++ E RAW V+++LD M EA ++LVG HDF++FR+ CQA+S
Sbjct: 110 RRHYLYRIICRKARLAL-EHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQASS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NGD-----------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G +T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKMAGEGSMTPEDVRAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|84515131|ref|ZP_01002494.1| tRNA pseudouridine synthase A [Loktanella vestfoldensis SKA53]
gi|84511290|gb|EAQ07744.1| tRNA pseudouridine synthase A [Loktanella vestfoldensis SKA53]
Length = 257
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 147/298 (49%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q +V G +E A K P +I+ + RTDAGVHA
Sbjct: 1 MPRYALLVEYHGAPFAGWQRQTGLPSVQGAIEAALAKLSPGPHTIAAAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ PG+ D + A+N+ L+ + + + V D+HARF A E
Sbjct: 61 VAHCDL-------PGDW----DPFRLSEALNYHLKPD-PVAILGCALVADDWHARFDAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+++ PL+ E + W V +LD AMQ L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRVIARRAPLTS-EAGQMWRVNHDLDAAAMQAGADHLLGLHDFTTFRSSICQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL + EVV A+ + Y
Sbjct: 168 VKTLDELRI-EVVQRAIGT-----------------------------------EYRFHV 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR VG L+ VG G DV R L A+ A P+ P GL L V+Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWQPGDVARALTARDRAACGPVCPPQGLYLAGVRY 249
>gi|407976011|ref|ZP_11156913.1| tRNA pseudouridine synthase A [Nitratireductor indicus C115]
gi|407428512|gb|EKF41194.1| tRNA pseudouridine synthase A [Nitratireductor indicus C115]
Length = 247
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 148/297 (49%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ I +EY G + G Q+Q +V +E A F G+ V++ + RTD GVHA V
Sbjct: 3 RFRIDIEYDGRPYFGWQRQAGQHSVQEAIETAIAGFSGETVTLFGAGRTDTGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
H D+ R P H V+ A+N L E + I + + VP DF++RF A+ R
Sbjct: 63 HFDLSR--------EWPDH---TVQNAINALLVKEDERIAILAAQEVPDDFNSRFSAKAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V +AWHV+ LD AM EA K L+G HDF++FRA+ CQA SPI
Sbjct: 112 HYLYRIHNRRPPLTV-GFGQAWHVSAPLDHAAMHEAAKRLLGTHDFTTFRAAQCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L VS +D + EV A
Sbjct: 171 KTLDRLDVS------------RDGEFV----------------------------EVRAS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL++QVR +VG LK VG G DV R L+A+ A P+AP GL L V Y
Sbjct: 191 ARSFLHNQVRSLVGTLKRVGEGGWDADDVTRALEARDRKACGPVAPPYGLYLIKVDY 247
>gi|418407895|ref|ZP_12981212.1| tRNA pseudouridine synthase A [Agrobacterium tumefaciens 5A]
gi|358005881|gb|EHJ98206.1| tRNA pseudouridine synthase A [Agrobacterium tumefaciens 5A]
Length = 266
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 152/303 (50%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q+Q N +V G LE A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTPYFGWQRQDNGPSVQGALEAAVRSLTGETVSIRGAGRTDSGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V HVD+ R P+ +R A+N H ++ + V DV V DF ARF A
Sbjct: 61 VAHVDLSRD--------WAPYK---LRNALNAHLAMAKEAVSVVDVTAVTEDFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ L++ E RAW V+++LD M EA ++LVG HDF++FR+ CQA+S
Sbjct: 110 RRHYLYRIICRKARLAL-EHKRAWWVSKDLDHEHMHEAAQMLVGRHDFTTFRSVHCQASS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NGD-----------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G +T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKMAGEGSMTPEDVRAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|417103876|ref|ZP_11961225.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CNPAF512]
gi|327191110|gb|EGE58158.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CNPAF512]
Length = 266
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 152/303 (50%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G + G Q+Q N +V G +E A G+ VS+ + RTD+GVHA
Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + E P ++ A+N L+ G+ + + DV VP F ARF A
Sbjct: 61 VIHADLSK-------EWSPYQ----LQNALNAHLRLAGERVSILDVEAVPEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FR++ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ S AL E+
Sbjct: 169 PVRTLDRLDVTR--SGALI--------------------------------------EIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLY--FLQVD 246
Query: 356 LPE 358
PE
Sbjct: 247 YPE 249
>gi|421848414|ref|ZP_16281402.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus NBRC
101655]
gi|371460775|dbj|GAB26605.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus NBRC
101655]
Length = 262
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 153/303 (50%), Gaps = 58/303 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+QR+ + +EY GT G Q+Q + +V +LEEA + +PVS + RTD+GVHA +
Sbjct: 9 VQRWAVKLEYDGTGLVGWQRQKSGLSVQSLLEEAAARLANNRPVSSITAGRTDSGVHALA 68
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P +V S VR +++ L+ +++V D V +D+ ARF A
Sbjct: 69 QVAHLDF-------PADVRFSRHS--VREGLSYHLKPH-NVVVLDAAQVDTDWSARFSAI 118
Query: 176 ERTYFYRIL---SGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
R+Y YRIL S P L+ + WHV LD+ MQEA +LVG HDF+SFRA CQ
Sbjct: 119 WRSYQYRILNRRSRPTLLA----GQVWHVKSTLDVEKMQEAANILVGSHDFTSFRAVACQ 174
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A+SP+RTLD+L +S G V
Sbjct: 175 AHSPMRTLDQLEISR------------------------------HGDEVL--------- 195
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V A+ARSFL+HQVR +VG LK VG G V L+A+ AA P AP GL L V
Sbjct: 196 -VFAKARSFLHHQVRNMVGTLKLVGIGAWQPERVAEALEARNRCAAGPTAPPEGLYLNGV 254
Query: 353 KYD 355
YD
Sbjct: 255 GYD 257
>gi|347738169|ref|ZP_08869752.1| tRNA pseudouridine synthase A [Azospirillum amazonense Y2]
gi|346918872|gb|EGY00655.1| tRNA pseudouridine synthase A [Azospirillum amazonense Y2]
Length = 246
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 148/299 (49%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q Q + +V LEEA +F G+ V + + RTDAGVHA
Sbjct: 1 MPRWKLTVEYDGRPYQGWQLQPHGPSVQACLEEAIRRFSGEMVRVHAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
VCH D+E+ P VR A+N L+ E + V V DFHAR +
Sbjct: 61 VCHFDLEK-----------PTKPDTVRDALNFHLRPE-PVAVVMAVAVDDDFHARLSCKG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ + RAWHV LD AM E + LVG HDF+SFRAS CQA SP
Sbjct: 109 RAYLYRIVNRRAPLAL-DIGRAWHVPTILDADAMNEGAQRLVGNHDFTSFRASICQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL L VS V G + ++A
Sbjct: 168 VKTLSLLTVSRV------------------------------GQEI----------HMVA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RARSFL+HQ+R ++G L+ VG G+ T DV R L+A+ AA AP GL Y+
Sbjct: 188 RARSFLHHQIRNMIGTLRLVGEGKWTPDDVTRALEARNRAAAGQTAPPDGLYFTEAWYE 246
>gi|334314824|ref|YP_004547443.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti AK83]
gi|407719263|ref|YP_006838925.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti Rm41]
gi|334093818|gb|AEG51829.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti AK83]
gi|407317495|emb|CCM66099.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti Rm41]
Length = 247
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 150/299 (50%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G+ + G Q+Q N +V G +E+A + VSI + RTD+GVHA
Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H+D+ R K S ++ A+N L G+ + + DV P DF ARF A
Sbjct: 61 VAHLDLTREWK-----------SYTLQNALNAHLALAGERVSILDVAEAPGDFDARFSAI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E RAW V + LD AM EA + LVG HDF++FR++ CQA S
Sbjct: 110 RRHYLYRIISRRSPLAL-EARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ G + E+
Sbjct: 169 PLRTLDRLDVTRA------------------------------GELI----------EIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A A+SFL++Q+R G LK VG G+ T D++ LKA+ A P+AP GL V Y
Sbjct: 189 ATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALKARDRKACGPVAPPDGLYFMRVDY 247
>gi|418296810|ref|ZP_12908653.1| tRNA pseudouridine synthase A [Agrobacterium tumefaciens
CCNWGS0286]
gi|355538985|gb|EHH08227.1| tRNA pseudouridine synthase A [Agrobacterium tumefaciens
CCNWGS0286]
Length = 266
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 152/303 (50%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q+Q N +V G LE A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTPYYGWQRQDNGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V HVD+ R + P+ +R A+N L G+ + V D V DF ARF A
Sbjct: 61 VVHVDLLRDWE--------PYK---LRNALNAHLAMAGEAVAVLDAASVTEDFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ L++ E RAW V+++LD M EA ++LVG HDF++FR+ CQANS
Sbjct: 110 RRHYLYRIICRKARLAL-EHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NGD-----------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G +T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGTMTPEDVRAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|258541768|ref|YP_003187201.1| tRNA pseudouridine synthase A [Acetobacter pasteurianus IFO
3283-01]
gi|384041689|ref|YP_005480433.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-12]
gi|384050204|ref|YP_005477267.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-03]
gi|384053314|ref|YP_005486408.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-07]
gi|384056546|ref|YP_005489213.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-22]
gi|384059187|ref|YP_005498315.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-26]
gi|384062481|ref|YP_005483123.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-32]
gi|384118557|ref|YP_005501181.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-01-42C]
gi|421852395|ref|ZP_16285084.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|256632846|dbj|BAH98821.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-01]
gi|256635903|dbj|BAI01872.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-03]
gi|256638958|dbj|BAI04920.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-07]
gi|256642012|dbj|BAI07967.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-22]
gi|256645067|dbj|BAI11015.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-26]
gi|256648122|dbj|BAI14063.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-32]
gi|256651175|dbj|BAI17109.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654166|dbj|BAI20093.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO
3283-12]
gi|371479475|dbj|GAB30287.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 262
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 153/303 (50%), Gaps = 58/303 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+QR+ + +EY GT G Q+Q + +V +LEEA + +PVS + RTD+GVHA +
Sbjct: 9 VQRWAVKLEYDGTGLVGWQRQKSGLSVQSLLEEAAARLANNRPVSSITAGRTDSGVHALA 68
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P +V S VR +++ L+ +++V D V +D+ ARF A
Sbjct: 69 QVAHLDF-------PADVRFSRHS--VREGLSYHLKPH-NVVVLDAAQVDTDWSARFSAI 118
Query: 176 ERTYFYRIL---SGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
R+Y YRIL S P L+ + WHV LD+ MQEA +LVG HDF+SFRA CQ
Sbjct: 119 WRSYQYRILNRRSRPTLLA----GQVWHVKSTLDVEKMQEAANILVGSHDFTSFRAVACQ 174
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A+SP+RTLD+L +S G V
Sbjct: 175 AHSPMRTLDQLEISR------------------------------HGDEVI--------- 195
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V A+ARSFL+HQVR +VG LK VG G V L+A+ AA P AP GL L V
Sbjct: 196 -VFAKARSFLHHQVRNMVGTLKLVGIGAWQPERVAEALEARNRCAAGPTAPPEGLYLNGV 254
Query: 353 KYD 355
YD
Sbjct: 255 GYD 257
>gi|432859692|ref|XP_004069217.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Oryzias
latipes]
Length = 296
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 168/320 (52%), Gaps = 62/320 (19%)
Query: 59 RYLIAVEYIGTRFSGSQK----QLNCRTVVGVLEEAFHKFIGQPV---SISLSSRTDAGV 111
RYLI +YIGT++SG K Q+ + V +EEA K +PV S+S+SSRTD GV
Sbjct: 6 RYLIFFQYIGTKYSGVVKVPPQQMVKKGVQDHIEEAIQKL--KPVNSASLSVSSRTDTGV 63
Query: 112 HAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHAR 171
HA SN H D++R + + PP ++ A+N+ LQ+E I + V DFHAR
Sbjct: 64 HALSNSAHFDLQRRNNK------PPFAEDLLVEALNYHLQTE-QIRINQAHRVADDFHAR 116
Query: 172 FRAQERTYFYRILSGPEP---LSVFEKDRAWHVTE-ELDLRAMQEACKVLVGCHDFSSFR 227
+RAQ RTY YR+ G L + E + W + + ELD+ AM+EA VL+G HDFSSFR
Sbjct: 117 YRAQSRTYVYRVALGVRHRTLLPLTESNLCWDIQDTELDVEAMREAAAVLIGTHDFSSFR 176
Query: 228 A--SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGI 285
A S +P++TLD ++SI +LG N F
Sbjct: 177 AVNSDMTFKNPVKTLD----------------------VASI----QLG------NSFAS 204
Query: 286 RKKHRS---YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA--ASP 340
HR E+ +RSFLY QVR + G L AVG G LTVS + +L+AK A +
Sbjct: 205 TYFHRQVSFLELTFTSRSFLYKQVRRMTGALVAVGRGLLTVSQLRDLLEAKDNLAYPQNL 264
Query: 341 MAPACGLSLGFVKY---DLP 357
+APA GL L V Y DLP
Sbjct: 265 VAPAHGLFLTQVAYRESDLP 284
>gi|86356072|ref|YP_467964.1| tRNA pseudouridine synthase A [Rhizobium etli CFN 42]
gi|86280174|gb|ABC89237.1| tRNA pseudouridine synthase A protein [Rhizobium etli CFN 42]
Length = 267
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 152/303 (50%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G + G Q+Q N +V G +E A G+ VS+ + RTD+GVHA
Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + E P ++ A+N L+ G+ + + DV VP F ARF A
Sbjct: 61 VIHADLSK-------EWSPYQ----LQNALNAHLRLAGERVSILDVAAVPEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FR++ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKTLDDEVMHAAAQRLVGRHDFSTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ S AL E+
Sbjct: 169 PVRTLDRLDVTR--SGALI--------------------------------------EIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLY--FLQVD 246
Query: 356 LPE 358
PE
Sbjct: 247 YPE 249
>gi|209965580|ref|YP_002298495.1| tRNA pseudouridine synthase A [Rhodospirillum centenum SW]
gi|238057735|sp|B6IPI0.1|TRUA_RHOCS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|209959046|gb|ACI99682.1| tRNA pseudouridine synthase A [Rhodospirillum centenum SW]
Length = 245
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 140/278 (50%), Gaps = 53/278 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QR+ + +EY G F G Q+Q N +V LEEA ++F + V++ + RTDAGVHA +
Sbjct: 1 MQRWKLTLEYDGRPFVGWQRQDNGPSVQQALEEAIYRFTQETVTVFCAGRTDAGVHALAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V VD+ R + + V+ A+N L+ + V V V DFHARF
Sbjct: 61 VASVDLAREAT-----------ADKVQAALNFHLKPH-PVAVLRVEPVAPDFHARFSCLG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + E R WHV LD AM EA + LVG HDFSSFRAS CQA SP
Sbjct: 109 RAYLYRILNRRAP-AALEAGRVWHVQGGLDAEAMHEAAQRLVGQHDFSSFRASLCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL +L V+ V G V ++A
Sbjct: 168 VKTLSDLSVARV------------------------------GEEV----------RIVA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKT 334
RARSFL+HQVR +VG LK VG G T DV R L A+
Sbjct: 188 RARSFLHHQVRNMVGTLKLVGEGRWTADDVSRALAARN 225
>gi|379714271|ref|YP_005302609.1| tRNA pseudouridine synthase A [Rickettsia massiliae str. AZT80]
gi|376334917|gb|AFB32149.1| tRNA pseudouridine synthase A [Rickettsia massiliae str. AZT80]
Length = 245
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 143/277 (51%), Gaps = 53/277 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQATAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK 333
A SFL+H VR IVG L VG ++ +L+AK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAK 224
>gi|163795438|ref|ZP_02189405.1| Pseudouridylate synthase [alpha proteobacterium BAL199]
gi|159179424|gb|EDP63955.1| Pseudouridylate synthase [alpha proteobacterium BAL199]
Length = 248
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 150/299 (50%), Gaps = 54/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F G Q+Q N TV G +E+A F GQ V ++ + RTD GVHA
Sbjct: 1 MTRYRLTVEYDGAPFVGWQRQDNGATVQGAIEDAVFAFSGQRVEVAGAGRTDTGVHAEGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + R D+ V A+N L+ +V+ P DFHARF A
Sbjct: 61 VAHIDLA--TDR--------FDAVTVMNAINAHLRPLPVAVVSASVASP-DFHARFSAIW 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y Y I++ PL++ + RAW V LD+ AM + L+G HDF+SFRA CQ+ SP
Sbjct: 110 RSYRYVIVNRRAPLAL-DLGRAWSVLAPLDVAAMSAGAERLIGHHDFTSFRAVHCQSKSP 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI- 295
++TLD L VS +H V+
Sbjct: 169 MKTLDVLQVS-----------------------------------------RHGERIVVE 187
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARARSFL+HQVR +VG L+ VG G+ DV LKA+ AA P APA GL+L V Y
Sbjct: 188 ARARSFLHHQVRNMVGTLRLVGEGKWQPDDVTAALKARDRVAAGPTAPADGLTLTAVGY 246
>gi|418054121|ref|ZP_12692177.1| tRNA pseudouridine synthase A [Hyphomicrobium denitrificans 1NES1]
gi|353211746|gb|EHB77146.1| tRNA pseudouridine synthase A [Hyphomicrobium denitrificans 1NES1]
Length = 246
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 148/301 (49%), Gaps = 57/301 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY GT F G Q+Q ++ G LE A +F G+ + + RTDAGVHA
Sbjct: 1 MSRYRITIEYDGTPFIGWQRQAEGVSIQGALETAIRRFSGEAPGVRGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+E+ + PG + R A+N L+ I V V F ARF A +
Sbjct: 61 VAHFDLEKTWE--PGRI---------RDAMNFHLRPN-PIAVLSAARVDDTFDARFSAVK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + +++R W +LD AM EA +VL+G HDF++FRA+ CQA SP
Sbjct: 109 RHYEYRILTRRSP-PILQRNRVWWTMRDLDAGAMHEAAQVLLGKHDFTTFRAAQCQAQSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD VS + E++
Sbjct: 168 VKTLDVFDVSR------------------------------------------QGEEIVC 185
Query: 297 R--ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
R ARSFL+HQVR +VG LK VG G+ T D+ L+A A P+APA GL L V Y
Sbjct: 186 RVSARSFLHHQVRSMVGSLKLVGEGKWTRQDLADSLEAADREACGPVAPAAGLYLVRVDY 245
Query: 355 D 355
+
Sbjct: 246 E 246
>gi|88608581|ref|YP_505923.1| tRNA pseudouridine synthase A [Neorickettsia sennetsu str.
Miyayama]
gi|123763741|sp|Q2GF33.1|TRUA_NEOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|88600750|gb|ABD46218.1| tRNA pseudouridine synthase A [Neorickettsia sennetsu str.
Miyayama]
Length = 243
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 152/296 (51%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY VEY+GT FSG QKQ++ +V LE + + ++++++ RTDAGVHA V
Sbjct: 2 RYKAIVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQVF 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D R S +P +++ AVN+ L+ E I++ + V F ARF A R
Sbjct: 62 HFDA-RESTLQPFQIV---------NAVNYHLK-EKLIVLLKIEIVDETFDARFSAIRRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y+I + PL+VF K+R+WHV + L+L ++E + LVG HDF SFR+S C A++ IR
Sbjct: 111 YQYKITNRKTPLAVF-KNRSWHVPQTLNLDLIREQAQYLVGKHDFQSFRSSKCGASNAIR 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD L V + NG +F A A
Sbjct: 170 TLDRLEVEK-----------------------------NGEEMIFH-----------ASA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+SFL+HQVR++VG L A+ +G+L V IL K A P AP CGL L V Y
Sbjct: 190 KSFLHHQVRIMVGTLVAIASGKLM--SVTEILSKKNRRYAGPTAPPCGLYLLKVDY 243
>gi|121602227|ref|YP_989569.1| tRNA pseudouridine synthase A [Bartonella bacilliformis KC583]
gi|421761368|ref|ZP_16198171.1| tRNA pseudouridine synthase A [Bartonella bacilliformis INS]
gi|166228679|sp|A1UUB6.1|TRUA_BARBK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|120614404|gb|ABM45005.1| tRNA pseudouridine synthase A [Bartonella bacilliformis KC583]
gi|411173152|gb|EKS43200.1| tRNA pseudouridine synthase A [Bartonella bacilliformis INS]
Length = 247
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 148/299 (49%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G+ ++G Q+Q RTV G +E+A F GQ ++I+ + RTDAGVHA
Sbjct: 1 MARFKLTLEYDGSNYAGWQRQAELRTVQGAVEQAIFHFSGQQLTITTAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V HVD E K V + + A+N L+ +GD I + +V +P F AR A
Sbjct: 61 VAHVDFE-----KDWHV------NTIHNALNAHLRQQGDNIAILNVENIPDSFDARLSAV 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y ++IL+ P ++ K R W + L+ AM +A + LVG HDF++FR++ CQA S
Sbjct: 110 KRHYLFKILNRRAPPALNAK-RVWWLPRPLNADAMHKAAQKLVGKHDFTTFRSAHCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIRTL+ L V G +F +
Sbjct: 169 PIRTLECLDVQR------------------------------EGEEIF----------LY 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARARSFL+HQ+R G L VG G T D+E L AK +AP GL L V Y
Sbjct: 189 ARARSFLHHQIRSFAGSLMEVGIGRWTAQDLEEALHAKDRARCGMVAPPSGLYLTQVDY 247
>gi|410920439|ref|XP_003973691.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Takifugu
rubripes]
Length = 299
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 167/310 (53%), Gaps = 51/310 (16%)
Query: 59 RYLIAVEYIGTRFSGSQK----QLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHA 113
RYLI +YIGT +SG K QL + V LE+A K PVS+S+SSRTDAGVHA
Sbjct: 6 RYLIFFQYIGTNYSGVVKVPPQQLVKKGVQDHLEDAVRKLKPLNPVSMSISSRTDAGVHA 65
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
SN H D++R + PP + ++ A+N+ L++E I VT V DFHARF
Sbjct: 66 LSNSAHFDLQRRDDK------PPFAAHILVDALNYHLRTE-QISVTRAHRVAGDFHARFC 118
Query: 174 AQERTYFYRILSGP---EPLSVFEKDRAWHVTE-ELDLRAMQEACKVLVGCHDFSSFRA- 228
A+ RTY YR+ G P+ + E+D +W++ + ELD+ AM+EA +LVG HDFSSFRA
Sbjct: 119 ARSRTYVYRVALGACFQSPVPLTERDFSWNLPDTELDVEAMREAAALLVGVHDFSSFRAV 178
Query: 229 -SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
S +P++TLD + VS A + +++ P L
Sbjct: 179 NSDLPFKNPVKTLDAATIRTGVSFAQ-AHFHREVPFL----------------------- 214
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPM---APA 344
E+ +RSFLY QVR + G L AVG G L+V ++ +L+A+ + A P APA
Sbjct: 215 -----ELTFTSRSFLYKQVRRMTGALVAVGKGRLSVPQLKEVLEARD-SLAYPQGLGAPA 268
Query: 345 CGLSLGFVKY 354
GL L V Y
Sbjct: 269 HGLFLTRVDY 278
>gi|83943967|ref|ZP_00956424.1| tRNA pseudouridine synthase A [Sulfitobacter sp. EE-36]
gi|83954540|ref|ZP_00963251.1| tRNA pseudouridine synthase A [Sulfitobacter sp. NAS-14.1]
gi|83840824|gb|EAP79995.1| tRNA pseudouridine synthase A [Sulfitobacter sp. NAS-14.1]
gi|83845214|gb|EAP83094.1| tRNA pseudouridine synthase A [Sulfitobacter sp. EE-36]
Length = 262
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 156/301 (51%), Gaps = 53/301 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QRY + +EY G F G Q+Q++ +V G +E+A K + +I+ + RTDAGVHA +
Sbjct: 1 MQRYALKIEYHGAPFVGWQRQIDLASVQGAIEDALAKIEPRAHNIAAAGRTDAGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVR--RAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H D+ER D + R A+N+ L+ I + D V DFHARF A
Sbjct: 61 VAHCDMER-------------DWTPFRLSEAINYHLKPL-PIAIVDCVAVDDDFHARFSA 106
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
ER Y +R+L P + + W V + LD+ M+EA L+G HDF++FR++ CQA
Sbjct: 107 LERRYLFRVLVR-RPPATHQAGLVWQVKKPLDIDRMREAATHLIGEHDFTTFRSTICQAQ 165
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P++TLD + ++E PV GG V ++V
Sbjct: 166 TPVKTLDRVDMTE-------------HPV-------------GGGVEV--------QFDV 191
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR IVG L+ VG G DV+++L A+ A P+AP GL L V Y
Sbjct: 192 --RARSFLHNQVRSIVGTLERVGAGSFAPDDVKQMLAARDRQACGPVAPPQGLYLSHVTY 249
Query: 355 D 355
+
Sbjct: 250 E 250
>gi|430001989|emb|CCF17769.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Rhizobium sp.]
Length = 252
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 152/305 (49%), Gaps = 55/305 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q Q N +V L+ G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTTYVGWQMQENGHSVQAALQNGILSLTGESVSIRGAGRTDSGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ R K P+ +R A+N L G+ + V DV V F ARF A
Sbjct: 61 VIHADLTRDWK--------PY---TLRNALNAHLGMAGEKVAVIDVAAVDESFDARFSAV 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI++ P PL++ E +RAW V + LD +M A ++LVG HDF++FR++ CQA S
Sbjct: 110 RRHYLYRIINRPAPLAL-EANRAWWVPKPLDHDSMHAAAQMLVGHHDFTTFRSAHCQATS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ ++ E+
Sbjct: 169 PVRTLDRLDVT----------------------------------------RQGDLIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+++ +DV L+A+ P+AP GL F+K D
Sbjct: 189 ASAQSFLHNQIRSFAGTLKLAGEGKMSPADVGAALEARDRKECGPVAPPEGLY--FMKVD 246
Query: 356 LPEDD 360
P D+
Sbjct: 247 YPGDE 251
>gi|85703371|ref|ZP_01034475.1| tRNA pseudouridine synthase A [Roseovarius sp. 217]
gi|85672299|gb|EAQ27156.1| tRNA pseudouridine synthase A [Roseovarius sp. 217]
Length = 257
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 150/301 (49%), Gaps = 53/301 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q++ +V G +E A + P +I+ + RTDAGVHA +
Sbjct: 1 MPRYALKIEYDGAPFAGWQRQVDHPSVQGAIEAALGRIEPGPHTIAAAGRTDAGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVR--RAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H D+ P D R A+N+ L+ + +T VP D+HARF A
Sbjct: 61 VAHCDL-------------PRDWGTFRLSEALNYHLKPL-PVAITGCARVPEDWHARFSA 106
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
ER Y +RILS P+++ ++ R WHV LD+ AM+ L+G HDF++FR++ CQA
Sbjct: 107 TERQYLFRILSRRAPVTL-DQGRVWHVRPMLDIDAMRAGAAHLIGTHDFTTFRSTICQAA 165
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SPI+TLD + +SE + P G F +
Sbjct: 166 SPIKTLDSIEISEHST-------------------------PTGTEIHFQL--------- 191
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR IVG L+ VG G V L A+ A P+ P GL L V Y
Sbjct: 192 --RARSFLHNQVRSIVGTLERVGAGSWHPDQVRGALDARDRAACGPVCPPYGLYLAHVVY 249
Query: 355 D 355
+
Sbjct: 250 E 250
>gi|390451063|ref|ZP_10236645.1| tRNA pseudouridine synthase A [Nitratireductor aquibiodomus RA22]
gi|389661520|gb|EIM73129.1| tRNA pseudouridine synthase A [Nitratireductor aquibiodomus RA22]
Length = 247
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 146/299 (48%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ I +EY G + G Q+Q +V LE A F G+ V++ + RTD GVHA +
Sbjct: 1 MARFRIDIEYDGGPYFGWQRQATHHSVQAALETAIAAFSGEEVTLFGAGRTDTGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H ++ R + V+ A+N H +E + V + VP DF ARF A+
Sbjct: 61 VAHFNLSR-----------EWTARTVQNAINAHLAMAEETVAVIEAAQVPDDFDARFSAK 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI + PL+V ++ AWHV LD AM EA + LVG HDF++FRA+ CQA S
Sbjct: 110 ARHYLYRIHNRRPPLTV-DRAHAWHVAAPLDAEAMHEAAQRLVGTHDFTTFRAAQCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PI+TL++L V+ NG E+
Sbjct: 169 PIKTLEKLDVTR-----------------------------NG-----------EFVEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A ARSFL++QVR G LK VG G + DV L+A+ A P+AP GL L V Y
Sbjct: 189 ASARSFLHNQVRSFAGTLKRVGEGGWSADDVTTALEARDRKACGPVAPPHGLYLTRVDY 247
>gi|76637689|ref|XP_875031.1| PREDICTED: pseudouridylate synthase-like 1 [Bos taurus]
gi|297484219|ref|XP_002694181.1| PREDICTED: pseudouridylate synthase-like 1 [Bos taurus]
gi|296479092|tpg|DAA21207.1| TPA: pseudouridylate synthase-like 1 [Bos taurus]
Length = 303
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 162/307 (52%), Gaps = 44/307 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + PV ++SSRTDAGVHA
Sbjct: 9 RYLVYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVMPVKFTISSRTDAGVHAL 68
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+D++R S LPP V+ A+N L+ I V VPS FHAR A
Sbjct: 69 SNAAHLDIQRRSD------LPPFSPEVLTEALNTHLKHPA-IRVLQAFRVPSHFHARHAA 121
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G P+ L VFE++R W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 122 ISRTYLYRLATGCPRPDRLPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAG 181
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
A+SP+RTL VS D +S +P ++ +
Sbjct: 182 SPASSPVRTLRRASVSP--------------------DPASPFVLPEES-------RQLQ 214
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ S +APA GL
Sbjct: 215 FWSMEFESQSFLYKQVRRMTAVLVAVGLGALMPAQVKAILESRDPLGKHQSRVAPAHGLF 274
Query: 349 LGFVKYD 355
L V Y+
Sbjct: 275 LKSVLYE 281
>gi|408787235|ref|ZP_11198966.1| tRNA pseudouridine synthase A [Rhizobium lupini HPC(L)]
gi|408486866|gb|EKJ95189.1| tRNA pseudouridine synthase A [Rhizobium lupini HPC(L)]
Length = 266
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 151/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q+Q N +V G LE A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTPYYGWQRQENGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V HVD+ R + P+ +R A+N L G+ + V D V DF ARF A
Sbjct: 61 VVHVDLSRDWE--------PYK---LRNAINAHLAMAGEAVAVLDAASVTEDFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ L++ E RAW V+++LD M EA ++LVG HDF++FR+ CQANS
Sbjct: 110 RRHYLYRIICRKARLAL-EHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTL L V+ NG E+
Sbjct: 169 PVRTLARLDVTR-----------------------------NGD-----------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G +T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGTMTPEDVRAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|302384321|ref|YP_003820144.1| tRNA pseudouridine synthase A [Brevundimonas subvibrioides ATCC
15264]
gi|302194949|gb|ADL02521.1| tRNA pseudouridine synthase A [Brevundimonas subvibrioides ATCC
15264]
Length = 247
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 145/299 (48%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G ++G Q Q TV GV+E A F GQ V I+ + RTD+GVHA
Sbjct: 1 MPRYRLTLEYDGRPYAGFQAQDGLPTVQGVVETAVTAFCGQTVRIAAAGRTDSGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+++ +S V A+N + EG + V VP D+HARF A
Sbjct: 61 VAHVDLDKAWP-----------ASTVMNALNAHMVREG-VAVLACEAVPDDWHARFSATG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P E+ + WHV LD+ AMQ L+G HDF++FR CQ+ SP
Sbjct: 109 RRYLYRILNRPG-RPALERGKVWHVRRPLDVAAMQAGADHLIGHHDFTTFRDLACQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD VS V G V H +E
Sbjct: 168 EKTLDVARVSAV------------------------------GEEV------HLVFE--- 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+ QVR + G L VG G + DV+ L+A+ TA P++P+ GL L V YD
Sbjct: 189 -ARSFLHRQVRSMTGTLVEVGLGRWSPDDVKTALEARDRTACGPVSPSDGLYLTGVAYD 246
>gi|408379933|ref|ZP_11177524.1| tRNA pseudouridine synthase A [Agrobacterium albertimagni AOL15]
gi|407746310|gb|EKF57835.1| tRNA pseudouridine synthase A [Agrobacterium albertimagni AOL15]
Length = 255
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 152/305 (49%), Gaps = 55/305 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G+ + G Q+Q N ++ LE+A + V I + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGSAYVGWQRQENGHSIQAALEQAILSLTSETVVIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ R PH +R A+N H + + V D++ VP +F ARF A
Sbjct: 61 VIHADLSRD--------WVPHK---LRNALNAHLAMASEQVAVLDIQAVPDEFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI++ P L++ E RAW V + LD AM A + LVG HDF++FR++ CQA S
Sbjct: 110 RRHYLYRIITRPARLAL-EDKRAWWVPKPLDHEAMHAAAQQLVGHHDFTTFRSAHCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V S++L E+
Sbjct: 169 PVRTLDRLDVK----------------------RSAEL------------------IEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G++T SDV L+A+ A P+AP GL F+ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKMTPSDVLAALEARDRAACGPVAPPEGLF--FMAVD 246
Query: 356 LPEDD 360
P D+
Sbjct: 247 YPGDE 251
>gi|110632752|ref|YP_672960.1| tRNA pseudouridine synthase A [Chelativorans sp. BNC1]
gi|123162871|sp|Q11LD0.1|TRUA_MESSB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|110283736|gb|ABG61795.1| tRNA pseudouridine synthase A [Chelativorans sp. BNC1]
Length = 247
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 149/299 (49%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ I +EY G ++G Q+Q +V +E+A F G+ V+I + RTDAGVHA
Sbjct: 1 MHRFRIDIEYDGGPYAGWQRQAGQHSVQEAIEKAIAAFSGEEVTIRGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ R K S VR A+N L G+ + + V DF ARF A+
Sbjct: 61 VAHFDLSREWK-----------SDKVRDALNAHLTLAGEAVSILRAEAVAEDFDARFSAK 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI + PL++ E+ RAWHV LD AM EA + LVG HDF++FR+ CQA S
Sbjct: 110 ARHYLYRIANRRSPLAL-ERGRAWHVARRLDAAAMHEAAQRLVGKHDFTTFRSVQCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P++TLD L V+ V G + E+
Sbjct: 169 PVKTLDRLDVTRV------------------------------GDEI----------EIH 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A ARSFL++QVR +VG LK VG G T D + L+A+ A P+AP GL L V Y
Sbjct: 189 ASARSFLHNQVRSLVGTLKKVGEGGWTADDAQAALQARDRAACGPVAPPQGLYLVRVDY 247
>gi|418400254|ref|ZP_12973796.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti CCNWSX0020]
gi|359505723|gb|EHK78243.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti CCNWSX0020]
Length = 247
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 150/299 (50%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G+ + G Q+Q N +V G +E+A + VSI + RTD+GVHA
Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQENGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H+D+ R K S ++ A+N L G+ + + DV P DF ARF A
Sbjct: 61 VAHLDLTREWK-----------SYTLQNALNAHLALAGERVSILDVAEAPGDFDARFSAI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E RAW V + LD AM EA + LVG HDF++FR++ CQA S
Sbjct: 110 RRHYLYRIISRRSPLAL-EARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ G + E+
Sbjct: 169 PLRTLDRLDVTRA------------------------------GELI----------EIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A A+SFL++Q+R G LK VG G+ T D++ L+A+ A P+AP GL V Y
Sbjct: 189 ATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALEARDRKACGPVAPPDGLYFMRVDY 247
>gi|15964174|ref|NP_384527.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti 1021]
gi|384528161|ref|YP_005712249.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti BL225C]
gi|384534519|ref|YP_005718604.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti SM11]
gi|433612207|ref|YP_007189005.1| pseudouridylate synthase I [Sinorhizobium meliloti GR4]
gi|30913403|sp|Q92SH4.1|TRUA_RHIME RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|15073350|emb|CAC41858.1| Probable tRNA pseudouridine synthase A [Sinorhizobium meliloti
1021]
gi|333810337|gb|AEG03006.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti BL225C]
gi|336031411|gb|AEH77343.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti SM11]
gi|429550397|gb|AGA05406.1| pseudouridylate synthase I [Sinorhizobium meliloti GR4]
Length = 247
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 150/299 (50%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G+ + G Q+Q N +V G +E+A + VSI + RTD+GVHA
Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H+D+ R K S ++ A+N L G+ + + DV P DF ARF A
Sbjct: 61 VAHLDLTREWK-----------SYTLQNALNAHLALAGERVSILDVAEAPGDFDARFSAI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E RAW V + LD AM EA + LVG HDF++FR++ CQA S
Sbjct: 110 RRHYLYRIISRRSPLAL-EARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ G + E+
Sbjct: 169 PLRTLDRLDVTRA------------------------------GELI----------EIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A A+SFL++Q+R G LK VG G+ T D++ L+A+ A P+AP GL V Y
Sbjct: 189 ATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALEARDRKACGPVAPPDGLYFMRVDY 247
>gi|381165806|ref|ZP_09875033.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Phaeospirillum molischianum
DSM 120]
gi|380685296|emb|CCG39845.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Phaeospirillum molischianum
DSM 120]
Length = 263
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 143/304 (47%), Gaps = 59/304 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G+ ++G Q+Q + +V G +E A K G+ V++ + RTDAGVHA
Sbjct: 1 MPRYRLLVEYDGSSYNGWQRQDHGTSVQGAIEAAAAKLCGEEVTLYAAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ R + VR A+N L+ I + FHARF A
Sbjct: 61 VAHLDLPR-----------SYSGETVRDAINFHLKPN-AIAILAAEEAEDGFHARFSAIG 108
Query: 177 RTYFYRIL---SGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
R+Y YRIL S P ++ R W V LD M EA L+G HDF+SFRA CQA
Sbjct: 109 RSYLYRILNRRSAP----ALDRHRVWWVAASLDAERMAEAATRLLGHHDFTSFRAGCCQA 164
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP +TLD L V+ + G +
Sbjct: 165 KSPNKTLDRLDVTRI------------------------------GDEI----------H 184
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
++A ARSFL+HQVR +VG LK VG G+ T DV RIL A A P PA GL L V
Sbjct: 185 IVAEARSFLHHQVRNMVGTLKLVGDGKWTPDDVTRILGAHDRAKAGPTCPATGLILTGVV 244
Query: 354 YDLP 357
Y P
Sbjct: 245 YPQP 248
>gi|327288532|ref|XP_003228980.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Anolis
carolinensis]
Length = 293
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 162/309 (52%), Gaps = 49/309 (15%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYLI+ +Y GT +SG + + +GV LE+A K PV +SSRTD GVHA
Sbjct: 7 RYLISFQYSGTMYSGVMETPPHQATLGVQNYLEKAAEKLRPLVPVKFVISSRTDTGVHAL 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
N H+D+ER + PP SV+ +A+N L+ E I V R V FHARF A
Sbjct: 67 CNTAHIDIERSGGK------PPFSESVLVQALNRNLKHE-PIRVLAARRVSDTFHARFSA 119
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTE--ELDLRAMQEACKVLVGCHDFSSFRAS 229
RTY YR+++G P L VFE++ W VT+ LDL AMQEA +LVG HDFS+FR++
Sbjct: 120 LSRTYVYRVVTGCSCPSDLPVFERNLCW-VTQRGHLDLTAMQEAAGLLVGTHDFSTFRSA 178
Query: 230 GCQ--ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
+ A +P++T+D+L I S L SS L
Sbjct: 179 SSELPAKNPVKTIDQL------------EIRPSSGFLMHHVKSSDL-------------- 212
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASP--MAPAC 345
+ +E+ +RSFLY QVR + GVL AVG L V+ +L + + A P +APAC
Sbjct: 213 --KFWELEFTSRSFLYKQVRRMAGVLVAVGQHRLDPECVKTLLDIRDLMAYPPSTIAPAC 270
Query: 346 GLSLGFVKY 354
GL L V+Y
Sbjct: 271 GLFLKNVEY 279
>gi|151554108|gb|AAI49177.1| PUSL1 protein [Bos taurus]
Length = 312
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 163/315 (51%), Gaps = 44/315 (13%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSR 106
M RYL+ +Y+GT F+G + VGV LEEA + PV ++SSR
Sbjct: 26 MGAGSVPARYLVYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVMPVKFTISSR 85
Query: 107 TDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPS 166
TDAGVHA SN H+D++R S LPP V+ A+N L+ I V VPS
Sbjct: 86 TDAGVHALSNAAHLDIQRRSD------LPPFSPEVLTEALNTHLKHPA-IRVLQAFRVPS 138
Query: 167 DFHARFRAQERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHD 222
FHAR A RTY YR+ +G P+ L VFE++R W + + LD+ AMQEA + L+G HD
Sbjct: 139 HFHARHAAISRTYLYRLATGCPRPDRLPVFERNRCWALQADCLDVAAMQEAAQHLLGTHD 198
Query: 223 FSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNV 282
FS+F+++G A+SP+RTL VS D +S +P
Sbjct: 199 FSAFQSAGSPASSPVRTLRRASVSP--------------------DPASPFVLPEES--- 235
Query: 283 FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SP 340
++ + + + ++SFLY QVR + VL AVG G L + V+ IL+++ S
Sbjct: 236 ----RQLQFWSMEFESQSFLYKQVRRMTAVLVAVGLGALMPAQVKAILESRDPLGKHQSR 291
Query: 341 MAPACGLSLGFVKYD 355
+APA GL L V Y+
Sbjct: 292 VAPAHGLFLKSVLYE 306
>gi|420240713|ref|ZP_14744915.1| pseudouridylate synthase I [Rhizobium sp. CF080]
gi|398075468|gb|EJL66581.1| pseudouridylate synthase I [Rhizobium sp. CF080]
Length = 254
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 151/304 (49%), Gaps = 55/304 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G QKQ N +V LE+A + V + + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTPYVGWQKQENGHSVQSALEKAILALTRETVLVKGAGRTDSGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFL-QSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D+ R P E PH +R A+N +L + + V DV+ V F ARF A
Sbjct: 61 VVHMDLSR-----PWE---PHK---LRNALNAYLGMAHEKVAVIDVQAVDDAFDARFSAV 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E RAW VT +LD M A + LVG HDF++FR+ CQA S
Sbjct: 110 RRHYLYRIISRAAPLAL-EAKRAWWVTRDLDHEIMHAAAQTLVGKHDFTTFRSVHCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ S L E+
Sbjct: 169 PVRTLDLLDVT----------------------RSGDL------------------IEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R + G LK G G +T +DV L A+ A P+AP GL F+K +
Sbjct: 189 ATAQSFLHNQIRSLAGTLKLAGEGRMTPADVRAALDARDRKACGPVAPPEGLY--FMKVE 246
Query: 356 LPED 359
P D
Sbjct: 247 YPGD 250
>gi|402852597|ref|XP_003891004.1| PREDICTED: tRNA pseudouridine synthase-like 1 [Papio anubis]
Length = 303
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 164/306 (53%), Gaps = 44/306 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + +GV LEEA + PV ++SSRTDAGVHA
Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAIGVQNYLEEAAERLNSVVPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S R PP V+ A+N L+ ++ R VPSDFHAR A
Sbjct: 73 SNAAHLDVQRRSGR------PPFPPEVLAEALNTHLRHPAIRVLRAFR-VPSDFHARHAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+++G P L VFE++ W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLVTGCHRPAELPVFERNLCWTLQADCLDVAAMQEAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
SP+RTL + VS Q SP+++ ++ +K R
Sbjct: 186 SPVPSPVRTLHRVSVSP----------GQASPLVTPEES-----------------RKLR 218
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 219 FWSLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQARVAPAHGLF 278
Query: 349 LGFVKY 354
L V Y
Sbjct: 279 LKSVLY 284
>gi|421588140|ref|ZP_16033460.1| tRNA pseudouridine synthase A [Rhizobium sp. Pop5]
gi|403707222|gb|EJZ22274.1| tRNA pseudouridine synthase A [Rhizobium sp. Pop5]
Length = 268
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 151/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G LE A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFCMTVEYDGGPYVGWQRQENGHSVQGALEAAVLSLTGETVSIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + P+ ++ A+N L+ G+ + + DV VP F ARF A
Sbjct: 61 VIHADLSKD--------WSPYK---LQNALNAHLRLAGERVSILDVELVPEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FR++ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKALDHEVMHAAAQKLVGRHDFSTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NG-----------ELIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DV+ L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPEDVQAALEAQDRKACGPVAPPEGLY--FMQVD 246
Query: 356 LPE 358
PE
Sbjct: 247 YPE 249
>gi|116250203|ref|YP_766041.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. viciae
3841]
gi|115254851|emb|CAK05925.1| putative tRNA pseudouridine synthase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 272
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 150/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G +E A G+ VS+ + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + P+ ++ A+N L+ G+ + V DV P F ARF A
Sbjct: 61 VIHADLSKD--------WSPYQ---LQNALNAHLRIAGERVSVLDVEAAPEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FRA+ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ ++ E+
Sbjct: 169 PVRTLDRLDVT----------------------------------------RRGELIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE LKA+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALKARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|397476290|ref|XP_003809540.1| PREDICTED: tRNA pseudouridine synthase-like 1 [Pan paniscus]
Length = 303
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 164/306 (53%), Gaps = 44/306 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + +PV ++SSRTDAGVHA
Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S R PP V+ A+N L+ I V VPSDFHAR+ A
Sbjct: 73 SNAAHLDVQRRSGR------PPFPPEVLAEALNTHLRHPA-IRVLRAFRVPSDFHARYAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G + L VFE++ W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDVVAMQEAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
SP+RTL + VS Q SP+++ ++ +K R
Sbjct: 186 SLVPSPVRTLRRVSVSP----------GQASPLVTPEES-----------------RKLR 218
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 219 FWNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLF 278
Query: 349 LGFVKY 354
L V Y
Sbjct: 279 LKSVLY 284
>gi|440911727|gb|ELR61364.1| tRNA pseudouridine synthase-like 1, partial [Bos grunniens mutus]
Length = 312
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 161/307 (52%), Gaps = 44/307 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + PV ++SSRTDAGVHA
Sbjct: 34 RYLVYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVMPVKFTISSRTDAGVHAL 93
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+D++R S LPP V+ A+N L+ I V VPS FHAR A
Sbjct: 94 SNAAHLDIQRRSD------LPPFSPEVLTEALNTHLKHPA-IRVLQAFRVPSHFHARHAA 146
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G P+ L VFE++R W + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 147 ISRTYLYRLATGCPRPDRLPVFERNRCWALQAHCLDVAAMQEAAQHLLGTHDFSAFQSAG 206
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
A+SP+RTL VS D +S +P ++ +
Sbjct: 207 SPASSPVRTLRRASVSP--------------------DPTSPFVLPEES-------RQLQ 239
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ S +APA GL
Sbjct: 240 FWSMEFESQSFLYKQVRRMTAVLVAVGLGALMPAQVKAILESRDPLGKHQSRVAPAHGLF 299
Query: 349 LGFVKYD 355
L V Y+
Sbjct: 300 LKSVLYE 306
>gi|431806676|ref|YP_007233577.1| tRNA pseudouridine synthase A [Liberibacter crescens BT-1]
gi|430800651|gb|AGA65322.1| tRNA pseudouridine synthase A [Liberibacter crescens BT-1]
Length = 251
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 150/299 (50%), Gaps = 57/299 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY +EY G+ + G Q+Q N +V GV+E+A + V++ + RTD+GVHA V
Sbjct: 3 RYCFTIEYDGSYYVGWQRQKNGISVQGVIEDALFALTKETVTVYGAGRTDSGVHALGQVA 62
Query: 119 HVDV--ERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
HVD+ E S+R + A+N H + + DV+ V +F ARF A
Sbjct: 63 HVDLIREWCSER-------------LCSAMNAHLRFMNAAVSIIDVKSVNRNFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ PL + EK RAW V + LD AM EA ++LVG HDF++FR+ CQA +
Sbjct: 110 RRHYLYRIIIRRSPLCL-EKGRAWWVPKNLDYEAMHEAAQLLVGQHDFTTFRSVHCQAIT 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L ++SI N E+
Sbjct: 169 PVRTLDSL-------------------TITSIGNIV---------------------EIK 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A ARSFL+HQ+R VG LK VG G+ T +++R L A A P+APA GL V+Y
Sbjct: 189 AVARSFLHHQIRSFVGSLKLVGEGKWTSDNLKRALDACDRKACGPVAPAEGLYFLHVEY 247
>gi|424898030|ref|ZP_18321604.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. trifolii
WSM2297]
gi|393182257|gb|EJC82296.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. trifolii
WSM2297]
Length = 266
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 150/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G +E A G+ VS+ + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGHSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + P+ ++ A+N L+ G+ + + DV P F ARF A
Sbjct: 61 VIHTDLSKDWS--------PYQ---LQNALNAHLRLAGERVAILDVETAPEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FRA+ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKLLDYETMHAAAQRLVGRHDFSTFRAAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NG-----------ELIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLY--FLQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|395785419|ref|ZP_10465151.1| tRNA pseudouridine synthase A [Bartonella tamiae Th239]
gi|423717682|ref|ZP_17691872.1| tRNA pseudouridine synthase A [Bartonella tamiae Th307]
gi|395424966|gb|EJF91137.1| tRNA pseudouridine synthase A [Bartonella tamiae Th239]
gi|395427082|gb|EJF93198.1| tRNA pseudouridine synthase A [Bartonella tamiae Th307]
Length = 249
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 148/300 (49%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G+ ++G Q+Q ++ +E+A F G+ ++IS + RTDAGVHA
Sbjct: 1 MARFKLTIEYDGSNYAGWQRQEGQHSIQAAVEKAIFDFTGESLTISAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+++ VR A+N H Q+ +I + V ++F ARF A+
Sbjct: 61 VAHSDLKK-----------DWSCDTVRDAINAHLSQNGENIAILRAENVDNNFDARFSAK 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y + IL+ P ++ K RAW V + LD AM EA ++L G HDF++FRA+ CQA S
Sbjct: 110 KRHYRFIILNRRAPAALLAK-RAWWVPKPLDAEAMHEAAQILTGKHDFTTFRATQCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIR+LD L V I D + E++
Sbjct: 169 PIRSLDRLDV-----------IRNDETI-----------------------------EIL 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A ARSFL++Q+R G L VG G T D++ L AK +AP GL L V YD
Sbjct: 189 ASARSFLHNQIRSFAGSLMEVGVGRWTAHDLKEALDAKDRKRCGMVAPPFGLYLTQVDYD 248
>gi|402851218|ref|ZP_10899388.1| tRNA pseudouridine synthase A [Rhodovulum sp. PH10]
gi|402498510|gb|EJW10252.1| tRNA pseudouridine synthase A [Rhodovulum sp. PH10]
Length = 260
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 144/313 (46%), Gaps = 68/313 (21%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---------------VSI 101
+ RY + +EY GT F G Q Q N +V GVLE A F G P V++
Sbjct: 1 MPRYKLLIEYDGTPFVGWQVQNNGVSVQGVLEAAIAAFCGGPAPGEPAPGEPASGEGVAV 60
Query: 102 SLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDV 161
+ RTD GVHA V HVD+ R E+ P VR A N L+ + V
Sbjct: 61 RGAGRTDTGVHALGQVAHVDLPR-------EISP----DTVRDATNAHLRPH-PVAVLAA 108
Query: 162 RCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCH 221
VP F ARF A R Y YRI+ PL V E++RAW V LD AM A + LVG H
Sbjct: 109 EIVPDTFDARFSAVRRHYLYRIVDRRPPL-VLERNRAWRVGRPLDAEAMHRAAQALVGRH 167
Query: 222 DFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSN 281
DF++FRA+ CQA SP++TLD L V
Sbjct: 168 DFTTFRAAECQAKSPVKTLDRLDVHR---------------------------------- 193
Query: 282 VFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPM 341
FG + +VIA ARSFL+HQVR +VG L VG G V R L+A A P+
Sbjct: 194 -FG-----QEIQVIAEARSFLHHQVRSMVGTLVQVGQGRWPEHFVGRALEACDRKACGPV 247
Query: 342 APACGLSLGFVKY 354
AP GL L V Y
Sbjct: 248 APPDGLYLVRVDY 260
>gi|56697975|ref|YP_168346.1| tRNA pseudouridine synthase A [Ruegeria pomeroyi DSS-3]
gi|62901184|sp|Q5LNR0.1|TRUA_SILPO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56679712|gb|AAV96378.1| tRNA pseudouridine synthase A [Ruegeria pomeroyi DSS-3]
Length = 262
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 147/301 (48%), Gaps = 49/301 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY+GT F+G Q+Q + +V G +E A + P +I+ + RTDAGVH
Sbjct: 1 MPRYALKVEYLGTPFAGWQRQKDLPSVQGAIETALARLEPGPHTIAAAGRTDAGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R D + A+N+ L+ + + +T V D+HARF A E
Sbjct: 61 VAHCDLTR-----------DWDPFRLSEALNYHLKPQ-PVAITAAARVAEDWHARFSATE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L P + + W V LD RAMQ A +L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRLLMRRAP-ATHDAGLVWQVGHRLDARAMQAAADLLLGRHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL V V S FS G F +
Sbjct: 168 VKTLDELRVEAVES---FS----------------------GPEIRFHV----------- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G DV L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWAPEDVRSALEARDRAACGPVCPPQGLYLARVGYPE 251
Query: 357 P 357
P
Sbjct: 252 P 252
>gi|407800556|ref|ZP_11147416.1| tRNA pseudouridine synthase A [Oceaniovalibus guishaninsula
JLT2003]
gi|407057475|gb|EKE43451.1| tRNA pseudouridine synthase A [Oceaniovalibus guishaninsula
JLT2003]
Length = 253
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 148/302 (49%), Gaps = 54/302 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT FSG Q+Q + +V +E A + I+ + RTDAGVHA
Sbjct: 1 MPRYALRVEYDGTPFSGWQRQRDRPSVQATVEAALRRLQPDCPGIAAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D+ R D + A+NH L+ + + +T V +HARF A E
Sbjct: 61 VAQADMAR-----------DWDPFRLSEALNHHLRPD-PVAITACARVDDGWHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YR+L P V + + WH+ LD AM +A + LVG HDF++FR++ CQANSP
Sbjct: 109 RRYTYRLLVRRAP-PVLARGQVWHIRFPLDAGAMADAARHLVGRHDFTTFRSTMCQANSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLDEL I + V A
Sbjct: 168 LRTLDELR----------------------------------------IERTDAEIRVHA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY-D 355
RARSFL++QVR IVG L+ VG G + +DV L+A+ TA P+APA GL L V+Y D
Sbjct: 188 RARSFLHNQVRSIVGTLERVGAGAWSPADVAAALQARDRTACGPVAPAQGLCLTGVRYPD 247
Query: 356 LP 357
P
Sbjct: 248 CP 249
>gi|347759144|ref|YP_004866706.1| tRNA pseudouridine synthase A [Micavibrio aeruginosavorus ARL-13]
gi|347591662|gb|AEP10704.1| tRNA pseudouridine synthase A [Micavibrio aeruginosavorus ARL-13]
Length = 256
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 145/298 (48%), Gaps = 45/298 (15%)
Query: 58 QRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
QR+ + +EY G FSG Q+Q +V +E A F Q ++I ++ RTDAGVHA
Sbjct: 3 QRWKLTIEYDGRPFSGWQRQEAGIPSVQAAIEAAIQSFCQQDITIHVAGRTDAGVHARGQ 62
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D++ ++ G L +A+N L+ E +++ D V DFHARF A
Sbjct: 63 VAHFDLDYGNRALTGYDLT--------KALNAHLR-ETPVVILDAEAVGEDFHARFSAVN 113
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+ Y +R+L+ P P FE+ WHV LD+ AM+ L+G HDF++FR + CQA SP
Sbjct: 114 KLYIFRLLNRPAP-PAFERGLVWHVRRLLDVDAMRAGAAHLLGHHDFTTFRDTDCQAKSP 172
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L E+++ + QD E
Sbjct: 173 MRTLDRL---EIIAKPCVAGSGQD-------------------------------LEFHV 198
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+HQVR +VG L VG G+ T V L+A+ A P AP GL L + Y
Sbjct: 199 EGRSFLHHQVRNMVGTLAMVGDGKWTSDQVREALEARDRRAGGPTAPPDGLYLVRIDY 256
>gi|114568998|ref|YP_755678.1| tRNA pseudouridine synthase A [Maricaulis maris MCS10]
gi|122316778|sp|Q0ASJ7.1|TRUA_MARMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|114339460|gb|ABI64740.1| tRNA pseudouridine synthase A [Maricaulis maris MCS10]
Length = 249
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 150/302 (49%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY G FSG Q+Q N +V LE A K G PV + + RTD+GVHA +
Sbjct: 1 MPRYRITIEYDGRPFSGWQRQDNAPSVQESLERAAEKLDGAPVLVYGAGRTDSGVHALAQ 60
Query: 117 VCHVDVER-ISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D+ + +S K VR A+N+ L+ + + V + V DFHARF A
Sbjct: 61 VAHLDLAKDLSTDK------------VRDAINYHLKPD-PVAVIEAARVSDDFHARFSAT 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YR++ PL++ ++ + W VT +LD AM A + L+G HDF++FR + CQA S
Sbjct: 108 RRHYLYRMIDRRAPLTL-DRGQVWRVTRKLDAEAMHHAAQALLGQHDFTTFRDAQCQAES 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+++LD + VS G V ++
Sbjct: 167 PVKSLDAISVSRY------------------------------GEEV----------QLT 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+ QVR +VG L VG G+ + D +R L A + P+APA GL L V Y
Sbjct: 187 CSARSFLHRQVRSMVGSLVEVGVGKWSARDFKRALDAADRSRCGPVAPADGLYLTAVDYP 246
Query: 356 LP 357
P
Sbjct: 247 GP 248
>gi|296206475|ref|XP_002750239.1| PREDICTED: tRNA pseudouridine synthase-like 1, partial [Callithrix
jacchus]
Length = 301
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 165/306 (53%), Gaps = 44/306 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ ++Y+GT F+G + VGV LEEA + +PV ++SSRTDAGVHA
Sbjct: 11 RYLVYLQYVGTDFNGVAAVRGAQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 70
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S R PP V+ A+N L+ I V VPSDFHAR A
Sbjct: 71 SNAAHLDVQRRSGR------PPFPPEVLTEALNTHLRHPA-IRVLRAFRVPSDFHARHAA 123
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHV-TEELDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+++G + L VFE++ W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 124 TSRTYLYRLVTGCHRSDELPVFERNLCWALRADRLDVAAMQEAAQHLLGTHDFSAFQSAG 183
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
SP+RTL + VS +++ L + Q+S +K +
Sbjct: 184 SPVPSPVRTLRRVSVSPGLTSPLVTP--QES-------------------------RKLQ 216
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 217 FWSLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRLAPAHGLF 276
Query: 349 LGFVKY 354
L V Y
Sbjct: 277 LKSVVY 282
>gi|398379649|ref|ZP_10537769.1| pseudouridylate synthase I [Rhizobium sp. AP16]
gi|397722281|gb|EJK82825.1| pseudouridylate synthase I [Rhizobium sp. AP16]
Length = 265
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 153/317 (48%), Gaps = 61/317 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G + G Q+Q N +V G +E A G+ S+ + RTD+GVHA
Sbjct: 1 MPRYRMTVEYDGIPYVGWQRQNNGPSVQGAIERAILSLTGETASVRGAGRTDSGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + K PH +R A+N L+ GD + + +V V + F ARF A
Sbjct: 61 VTHADLSKEWK--------PH---TLRNALNAHLRLAGDRVAILNVMEVDASFDARFSAI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ PL++ E RAW V +++D M A + LVG HDF++FR+ CQANS
Sbjct: 110 RRHYLYRIIVRRAPLAL-EAGRAWWVAKDMDHEVMHTAAQTLVGRHDFTTFRSVHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ S +L E+
Sbjct: 169 PVRTLDRLDVTR----------------------SGEL------------------IEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY- 354
A A+SFL++Q+R G LK G G+ T DV L+A+ A P+AP GL V Y
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVRTALEARDRKACGPVAPPDGLYFMQVDYR 248
Query: 355 -------DLPEDDQTDA 364
+P+D+ D+
Sbjct: 249 DDAGSAPPIPDDESDDS 265
>gi|222084710|ref|YP_002543239.1| tRNA pseudouridine synthase A [Agrobacterium radiobacter K84]
gi|221722158|gb|ACM25314.1| tRNA pseudouridine synthase A [Agrobacterium radiobacter K84]
Length = 266
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 153/317 (48%), Gaps = 61/317 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G + G Q+Q N +V G +E A G+ S+ + RTD+GVHA
Sbjct: 2 MPRYRMTVEYDGIPYVGWQRQNNGPSVQGAIERAILSLTGETASVRGAGRTDSGVHAVGQ 61
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + K PH +R A+N L+ GD + + +V V + F ARF A
Sbjct: 62 VTHADLSKEWK--------PH---TLRNALNAHLRLAGDRVAILNVMEVDASFDARFSAI 110
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ PL++ E RAW V +++D M A + LVG HDF++FR+ CQANS
Sbjct: 111 RRHYLYRIIVRRAPLAL-EAGRAWWVAKDMDHEVMHTAAQTLVGRHDFTTFRSVHCQANS 169
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ S +L E+
Sbjct: 170 PVRTLDRLDVTR----------------------SGEL------------------IEIR 189
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY- 354
A A+SFL++Q+R G LK G G+ T DV L+A+ A P+AP GL V Y
Sbjct: 190 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVRTALEARDRKACGPVAPPDGLYFMQVDYR 249
Query: 355 -------DLPEDDQTDA 364
+P+D+ D+
Sbjct: 250 DDAGSAPPIPDDESDDS 266
>gi|197103844|ref|YP_002129221.1| tRNA pseudouridine synthase A [Phenylobacterium zucineum HLK1]
gi|196477264|gb|ACG76792.1| tRNA pseudouridine synthase [Phenylobacterium zucineum HLK1]
Length = 246
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 142/298 (47%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q Q T+ G +E A F G+ + + + RTD GVHA
Sbjct: 2 MPRYRLLIEYDGRPFNGFQAQDGLPTIQGAIERAVKAFCGEDLRLQAAGRTDTGVHARGQ 61
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD ++K P E VR A+N L + I V + P +HARF A+E
Sbjct: 62 VVHVD---LAKDWPAET--------VRNALNAHLVPQ-PIAVLEASVAPEGWHARFSAKE 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P ++ R WHV + LD AM EA + LVG HDF++FR GCQA SP
Sbjct: 110 RRYLYRILNRMAP-PALDQGRVWHVKKPLDAEAMHEAAQALVGHHDFTTFRDLGCQAKSP 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L S + VL +
Sbjct: 169 MKTLD-----------LASVRREGDEVLLEFAS--------------------------- 190
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+ QVR + G L VG G T +D+ L+A+ A P+APA GL L V Y
Sbjct: 191 --RSFLHRQVRSMTGTLAEVGVGRWTRADLVAALEARDRRACGPVAPAEGLYLTGVAY 246
>gi|312150754|gb|ADQ31889.1| pseudouridylate synthase-like 1 [synthetic construct]
Length = 303
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 163/306 (53%), Gaps = 44/306 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + +PV ++SSRTDAGVHA
Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S R PP V+ A+N L+ I V VPSDFHAR A
Sbjct: 73 SNAAHLDVQRRSGR------PPFPPEVLAEALNTHLRHPA-IRVLRAFRVPSDFHARHAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G + L VFE++ W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
SP+RTL + VS Q SP+++ ++ +K R
Sbjct: 186 SPVPSPVRTLRRVSVSP----------GQASPLVTPEES-----------------RKLR 218
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 219 FWNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLF 278
Query: 349 LGFVKY 354
L V Y
Sbjct: 279 LKSVLY 284
>gi|23503259|ref|NP_699170.1| tRNA pseudouridine synthase-like 1 [Homo sapiens]
gi|52783232|sp|Q8N0Z8.1|PUSL1_HUMAN RecName: Full=tRNA pseudouridine synthase-like 1; AltName:
Full=tRNA pseudouridylate synthase-like 1; AltName:
Full=tRNA-uridine isomerase-like 1
gi|21706547|gb|AAH34304.1| Pseudouridylate synthase-like 1 [Homo sapiens]
gi|22761287|dbj|BAC11527.1| unnamed protein product [Homo sapiens]
gi|119576649|gb|EAW56245.1| pseudouridylate synthase-like 1 [Homo sapiens]
Length = 303
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 163/306 (53%), Gaps = 44/306 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + +PV ++SSRTDAGVHA
Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S R PP V+ A+N L+ I V VPSDFHAR A
Sbjct: 73 SNAAHLDVQRRSGR------PPFPPEVLAEALNTHLRHPA-IRVLRAFRVPSDFHARHAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G + L VFE++ W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
SP+RTL + VS Q SP+++ ++ +K R
Sbjct: 186 SPVPSPVRTLRRVSVSP----------GQASPLVTPEES-----------------RKLR 218
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 219 FWNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLF 278
Query: 349 LGFVKY 354
L V Y
Sbjct: 279 LKSVLY 284
>gi|89070283|ref|ZP_01157602.1| tRNA pseudouridine synthase A [Oceanicola granulosus HTCC2516]
gi|89044122|gb|EAR50283.1| tRNA pseudouridine synthase A [Oceanicola granulosus HTCC2516]
Length = 257
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 147/307 (47%), Gaps = 50/307 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G ++G Q+Q TV G +E A + P +I+ + RTDAGVH
Sbjct: 1 MPRYALKVEYDGGPYAGWQRQDGPATVQGAIEAALARLEPGPHTIAAAGRTDAGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D+ + + + A+N+ L+ +V R V D+HARF A E
Sbjct: 61 VAQADLAKA-----------WEPFRLAEALNYHLKPAPIAIVACAR-VADDWHARFSANE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+++ PL FE+ + W V + LD AMQ +LVG HDF++FR+S CQA+SP
Sbjct: 109 RRYLFRLVARRAPLP-FERGQVWKVNQPLDAAAMQAGADLLVGHHDFTTFRSSICQADSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL V V P+G + Y
Sbjct: 168 VKTLDELTVETVTR-------------------------PDG----------YPEYRFHV 192
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G V L A+ A P+AP GL L VKY
Sbjct: 193 RARSFLHNQVRSFVGTLERVGAGAWPPERVGEALAARERKACGPVAPPQGLYLAAVKY-- 250
Query: 357 PEDDQTD 363
P D D
Sbjct: 251 PSDPFAD 257
>gi|440225373|ref|YP_007332464.1| tRNA pseudouridine synthase A [Rhizobium tropici CIAT 899]
gi|440036884|gb|AGB69918.1| tRNA pseudouridine synthase A [Rhizobium tropici CIAT 899]
Length = 267
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 146/299 (48%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G + G Q+Q N +V G +E A G+ VSI + RTD+GVHA
Sbjct: 1 MARYKMTVEYDGIPYVGWQRQENGPSVQGAIEGAILSLTGETVSIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + K +R A+N L+ G+ I + D+ V F ARF A
Sbjct: 61 VMHADLSKEWK-----------VYTLRNALNAHLRLAGNRIAILDIVEVDQSFDARFSAI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI++ PL++ E RAW V +++D M A + LVG HDF++FR++ CQANS
Sbjct: 110 RRHYLYRIIARRAPLAL-EAGRAWWVPKDMDHEVMHAAAQTLVGRHDFTTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ S +L E+
Sbjct: 169 PVRTLDRLDVTR----------------------SGEL------------------IEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A A+SFL++Q+R G LK G G+ T DV L+AK A P+AP GL V Y
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTSDDVRAALEAKDRKACGPVAPPDGLYFMQVDY 247
>gi|339319759|ref|YP_004679454.1| tRNA pseudouridine synthase A [Candidatus Midichloria mitochondrii
IricVA]
gi|338225884|gb|AEI88768.1| tRNA pseudouridine synthase A [Candidatus Midichloria mitochondrii
IricVA]
Length = 246
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 152/296 (51%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY I VEY G++F G Q+Q NC ++ +E + KF + V++ + RTDAGVHA V
Sbjct: 3 RYKITVEYDGSKFCGWQRQKNCISIQESIENSIAKFAHKEVTVFGAGRTDAGVHAFEQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D+E+ + ++ A+NHF++ DI V ++ V +DFHARF A+++
Sbjct: 63 HFDLEQ-----------DYQLHKIKSAINHFVKP--DIAVLNIEAVSTDFHARFSAKKKR 109
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YR+++ L++ +AW V E++D+ ++++ +L G HDF+SFRAS CQA + ++
Sbjct: 110 YIYRLVNRDSHLAIMH-TKAWLVKEKMDVDSIRKGALILTGEHDFASFRASSCQAKNSVK 168
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+D++ + I+++ + I
Sbjct: 169 TIDKIEI---------------------------------------IKREGEVIDFIFEG 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+SFL++QVR++ G LK +G + ++ +L A+ AP CGL L + Y
Sbjct: 190 KSFLHNQVRIMAGALKNIGIKKWDCKRLQEVLNAQDRKVGPETAPPCGLYLAKIWY 245
>gi|424888913|ref|ZP_18312516.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. trifolii
WSM2012]
gi|393174462|gb|EJC74506.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. trifolii
WSM2012]
Length = 266
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 150/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G +E A G+ VS+ + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + P+ ++ A+N L+ G+ + + DV P F ARF A
Sbjct: 61 VIHADLSKDWS--------PYQ---LQNALNAHLRVAGERVAILDVETAPEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FRA+ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKLLDHETMHAAAQRLVGRHDFSTFRAAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NG-----------ELIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLY--FLQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|357024212|ref|ZP_09086373.1| tRNA pseudouridine synthase A [Mesorhizobium amorphae CCNWGS0123]
gi|355543898|gb|EHH13013.1| tRNA pseudouridine synthase A [Mesorhizobium amorphae CCNWGS0123]
Length = 255
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G++F+G Q Q + +V +E+A +F G+ V + + RTDAGVHA + V
Sbjct: 3 RFRLDIEYDGSQFAGWQHQADQPSVQQAIEQAIERFCGEEVRLRAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD ++K PG+ VR AVN LQ G I + VP F ARF A R
Sbjct: 63 HVD---LAKAWPGDK--------VRDAVNAHLQMAGARIALLKAAAVPDGFDARFSATGR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRIL+ P S EK + W V + LD AM EA K+L+G HDF++FR++ CQA+SP+
Sbjct: 112 HYLYRILNRRAP-SALEKGKVWWVPKRLDAAAMHEAAKLLLGRHDFTTFRSTQCQADSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTLD + VS ++ EV A
Sbjct: 171 RTLDRIDVS----------------------------------------REGDLIEVRAS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL++QVR +VG LK VG G +D++ L A A +AP GL L V Y
Sbjct: 191 ARSFLHNQVRSMVGSLKRVGDGSWRAADLKAALDAHDRAACGQVAPPDGLFLIGVDY 247
>gi|170749553|ref|YP_001755813.1| tRNA pseudouridine synthase A [Methylobacterium radiotolerans JCM
2831]
gi|238688894|sp|B1M6N9.1|TRUA_METRJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|170656075|gb|ACB25130.1| tRNA pseudouridine synthase A [Methylobacterium radiotolerans JCM
2831]
Length = 253
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 144/299 (48%), Gaps = 49/299 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G+ F G Q+Q + TV G +E A +F G+ ++ + RTDAGVHA
Sbjct: 1 MPRYKLVIEYDGSPFCGWQRQADDPTVQGAIEAAVTRFSGENARLTCAGRTDAGVHAIHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + + VR A+N L+ + + + VP F AR A
Sbjct: 61 VAHLDLAKDWR-----------TDTVRDALNAHLRPQ-PVAILSAETVPDSFDARHSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + + WHV LD M +A + LVG HDFS+FRA+ CQANSP
Sbjct: 109 RHYRYRILNRRSP-AALTRAHVWHVPWPLDADLMHDAAQRLVGRHDFSAFRAAECQANSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IRTL++L V+ +P+ H V
Sbjct: 168 IRTLEQLDVAR-------------APM-----------------------ALHDEIVVAT 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG L G L DV IL + + P+APA GL+ V YD
Sbjct: 192 AARSFLHHQVRAMVGTLMLAGCRRLAADDVAEILASGDKSRCGPLAPAAGLTFVGVDYD 250
>gi|357030900|ref|ZP_09092844.1| tRNA pseudouridine synthase A [Gluconobacter morbifer G707]
gi|356415594|gb|EHH69237.1| tRNA pseudouridine synthase A [Gluconobacter morbifer G707]
Length = 268
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 150/305 (49%), Gaps = 60/305 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
R+ I +EY GT + G Q+Q N ++ G++E A K + G+PV + RTDAGVHA V
Sbjct: 12 RWAIRIEYDGTGYVGWQRQTNGVSIQGLIEAAATKLVRGRPVPSITAGRTDAGVHATGLV 71
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H+D K D+ +R +N+ L+ ++V VP+D+ ARF A R
Sbjct: 72 VHLDFPADGKI---------DARQIRDGMNYHLKPH-RVVVLQAASVPADWSARFSAIWR 121
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
+Y + IL+ ++ E + WHV LD++AMQE L+G HDF+SFRA+ CQANSPI
Sbjct: 122 SYRFTILNRASRPALME-GQVWHVRRRLDVQAMQEGANHLLGQHDFTSFRAAACQANSPI 180
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-- 295
RTLD L V HR E +
Sbjct: 181 RTLDVLTV-------------------------------------------HREGECVII 197
Query: 296 -ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+ARSFL+HQVR +VG L VG+G+ T + L A+ A P +P GL L V Y
Sbjct: 198 NTKARSFLHHQVRNMVGSLALVGSGQWTPDRMGEALAARNRCMAGPTSPPEGLCLTGVGY 257
Query: 355 DLPED 359
PED
Sbjct: 258 --PED 260
>gi|399044436|ref|ZP_10738084.1| pseudouridylate synthase I [Rhizobium sp. CF122]
gi|398057215|gb|EJL49189.1| pseudouridylate synthase I [Rhizobium sp. CF122]
Length = 270
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 149/302 (49%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G + G Q+Q N +V G +E+A G+ VSI + RTD+GVHA
Sbjct: 1 MHRYRMIVEYDGGPYVGWQRQENGPSVQGAIEKAILSASGETVSIRGAGRTDSGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ R E LP ++ A+N L+ G+ + + V F ARF A
Sbjct: 61 VIHADLAR-------EWLP----FKLQNALNAHLKLAGERVAIISVEAASEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD AM A + LVG HDFS+FR++ CQANS
Sbjct: 110 RRHYLYRIISRRAPLAL-EAGKAWWVPKPLDHEAMHAAAQALVGKHDFSTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIRTLD L V+ NG E+
Sbjct: 169 PIRTLDRLDVTR-----------------------------NG-----------ELIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T +DV L A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPNDVRAALDARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LP 357
P
Sbjct: 247 YP 248
>gi|114769437|ref|ZP_01447063.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2255]
gi|114550354|gb|EAU53235.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2255]
Length = 255
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 145/297 (48%), Gaps = 49/297 (16%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY G + G Q+Q + +V +E A K + I + RTDAGVHA +
Sbjct: 3 RYALKVEYDGKPYHGWQRQRDVPSVQQTIEIAISKIAPEKPEIQGAGRTDAGVHATGQIA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D+ + P DS + A+N+ L+ E I +T V DFHARF A+ER
Sbjct: 63 HFDLNK-----------PWDSFRLSEAINYHLRPE-PISITKCSIVADDFHARFSAKERR 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y +R+LS P ++ + W + +LDL MQE K LVG HDF++FR+S CQA SPI+
Sbjct: 111 YVFRLLSRRAP-AIVDVGWVWQIQHDLDLELMQEGAKYLVGKHDFTTFRSSICQAQSPIK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
+L E+ + E+ S+++ + +E A
Sbjct: 170 SLKEISIKEI-----------------SLEHG-------------------KEFEFTIIA 193
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RSFL++QVR +G L+ VG+G V L AK + P+ P GL L V YD
Sbjct: 194 RSFLHNQVRSFIGTLERVGSGSWDPERVHEALIAKDRSKCGPVCPPHGLYLAQVSYD 250
>gi|83951133|ref|ZP_00959866.1| tRNA pseudouridine synthase A [Roseovarius nubinhibens ISM]
gi|83839032|gb|EAP78328.1| tRNA pseudouridine synthase A [Roseovarius nubinhibens ISM]
Length = 258
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 151/307 (49%), Gaps = 51/307 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q + +V G +E A +I+ + RTDAGVHA
Sbjct: 1 MPRYALKVEYHGAPFAGWQRQKDQPSVQGAIEAALSALEPGAHTIAAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R D + A+N+ L+ + +T V D+HARF A E
Sbjct: 61 VAHCDLRRDW-----------DPFRLSEALNYHLKP-APVAITACAPVAEDWHARFSALE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L+ P + + W + LD AMQ AC+ LVG HDF++FR+S CQA SP
Sbjct: 109 RRYLFRLLTRRAP-ATHDAGLVWQIPHRLDTDAMQTACRHLVGRHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL ++E + G + + +R
Sbjct: 168 VKTLDELTITE-----------------------------HEGVSGWEVR-------FFL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G + DV+ L A+ A P++P GL L V+Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGRWSPDDVKAALDARNRAACGPVSPPHGLYLAGVEY-- 249
Query: 357 PEDDQTD 363
PED D
Sbjct: 250 PEDPFAD 256
>gi|354495795|ref|XP_003510014.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Cricetulus
griseus]
gi|344251676|gb|EGW07780.1| tRNA pseudouridine synthase-like 1 [Cricetulus griseus]
Length = 291
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 164/310 (52%), Gaps = 50/310 (16%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G VGV LEEA + +P+ ++SSRTDAGVHA
Sbjct: 13 RYLVFFQYLGTDFNGVAAVRGNHRAVGVQNFLEEAATRLNSIEPIRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+D+ R S L P+ VV +A+N L+ + I V VP+DFHAR A
Sbjct: 73 SNAAHLDIHRRSG------LQPYTPEVVTQALNTHLKHQA-IRVLKAFRVPNDFHARRAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHV-TEELDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G P+ L VFE++ W + T+ LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLATGCHWPDQLPVFEQNVCWALQTKSLDVAAMQEAAQHLIGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
A S +RTL + VS +G ++ F + ++ R
Sbjct: 186 SPATSTVRTLRRVSVS------------------------------SGPASPFALPQESR 215
Query: 291 SYEVIA---RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPAC 345
+ ++SFLY QVR + VL AVG G LT ++V+ IL ++ + +APA
Sbjct: 216 RLQFWTLEFESQSFLYRQVRRMTAVLVAVGQGILTPTEVKAILDSQDPLGKYQARVAPAR 275
Query: 346 GLSLGFVKYD 355
GL L V YD
Sbjct: 276 GLFLKSVLYD 285
>gi|451940121|ref|YP_007460759.1| tRNA pseudouridine synthase A [Bartonella australis Aust/NH1]
gi|451899508|gb|AGF73971.1| tRNA pseudouridine synthase A [Bartonella australis Aust/NH1]
Length = 247
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 147/297 (49%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q RT+ +E+A +F GQ +++ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAGLRTLQSAVEQAIFRFCGQQSTVTAAGRTDAGVHATGQVI 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
H+D + + V A+N L+ +G DI V + + VP F ARF A R
Sbjct: 63 HIDFAK-----------NWHAYTVCAALNAHLRQQGEDIAVLNAQSVPDGFDARFCATRR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ AM EA + LVG HDF++FR+S CQA SPI
Sbjct: 112 YYLFKILNRCAPPALNAK-RVWWLPKPLNAEAMHEAAQKLVGRHDFTTFRSSHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L + G +F + A+
Sbjct: 171 RTLERLDIQR------------------------------KGDEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R VG L VG G T+ D+E L AK ++P GL L V Y
Sbjct: 191 ARSFLHHQIRSFVGSLVEVGIGRWTIRDLEAALHAKDRARCGTVSPPSGLYLTKVDY 247
>gi|209547671|ref|YP_002279588.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|238057734|sp|B5ZN21.1|TRUA_RHILW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|209533427|gb|ACI53362.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 268
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 151/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G +E A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + P+ ++ A+N L+ G+ + + DV V F ARF A
Sbjct: 61 VIHADLSK--------AWSPYQ---LQNALNAHLRLAGERVSILDVEAVAEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FRA+ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ S +L E+
Sbjct: 169 PVRTLDRLDVTR----------------------SGEL------------------IEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLY--FLQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus
str. psy62]
gi|254039972|gb|ACT56768.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 247
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 151/296 (51%), Gaps = 52/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHA V
Sbjct: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D+ R E +P ++ +A+N +L+ I + ++ V FHARF A R+
Sbjct: 63 HFDLVR-------EWVP----VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI++ PL++ EK RAW + + LD M+ A + LVG HDF++FR+ CQA+SPIR
Sbjct: 112 YLYRIITRQAPLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+D V N N+ IR A
Sbjct: 171 TIDHFDV-------------------------------NSFGNLIEIR---------VVA 190
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+ Q+R VG LK VG G+ T +D+E+ L+A+ P+AP GL V+Y
Sbjct: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246
>gi|220924613|ref|YP_002499915.1| tRNA pseudouridine synthase A [Methylobacterium nodulans ORS 2060]
gi|254789641|sp|B8IFQ2.1|TRUA_METNO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|219949220|gb|ACL59612.1| tRNA pseudouridine synthase A [Methylobacterium nodulans ORS 2060]
Length = 254
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 148/298 (49%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT F+G Q+Q RTV LEEA +F+ +PV + + RTDAGVHA+
Sbjct: 1 MPRYKLVVEYDGTAFAGWQRQAADRTVQQALEEAIERFVNRPVRVHCAGRTDAGVHASHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D++R + + VR A N L+ E +++ R P DF AR A +
Sbjct: 61 VVHLDLDREWR-----------TDTVRDATNAHLRPEPVSVLSAARVGP-DFDARHSALK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + WHV LD AM A + L+G HDFS+FRA+ CQA+SP
Sbjct: 109 RHYRYRILNRRSP-PALARGYVWHVPWALDAAAMHAAAQTLLGRHDFSAFRAAECQASSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD+L V G + V
Sbjct: 168 LRTLDQLDVERR------------------------------GDEIL----------VAT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L G+G L + V +L ++ P+APA GL+L V Y
Sbjct: 188 SARSFLHHQVRGMVGTLMLAGSGRLDTAGVRAVLDSRDRARCGPLAPAAGLTLTGVDY 245
>gi|295691224|ref|YP_003594917.1| tRNA pseudouridine synthase A [Caulobacter segnis ATCC 21756]
gi|295433127|gb|ADG12299.1| tRNA pseudouridine synthase A [Caulobacter segnis ATCC 21756]
Length = 247
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 140/298 (46%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G ++G Q Q +V G +E A F GQ V I+ + RTD GVHA
Sbjct: 1 MPRYRLLVEYDGRPYAGFQAQATLPSVQGAIEAAVKAFCGQDVRIAAAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+E K P + V A+N L E + + D+HARF A E
Sbjct: 61 VVHVDLE---KDWPAQ--------TVFNALNAHLTHEA-VSILSAEVAEGDWHARFSANE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P +K R WH+ ++LD AM A + LVG HDF++FR CQ+ SP
Sbjct: 109 RRYLYRILNRRAP-PALDKGRVWHMKKDLDAEAMHAAAQHLVGLHDFTTFRDMHCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD V V G + H +E
Sbjct: 168 VKTLDVARVRRV------------------------------GEEI------HLDFE--- 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR + G L VG G T DV+ L+AK P+APA GL L V Y
Sbjct: 189 -ARSFLHRQVRSMTGTLVEVGAGRWTPDDVKAALEAKDRRECGPVAPADGLYLVGVGY 245
>gi|348507783|ref|XP_003441435.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Oreochromis
niloticus]
Length = 302
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 160/309 (51%), Gaps = 49/309 (15%)
Query: 59 RYLIAVEYIGTRFSGSQK----QLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHA 113
RYLI +YIGT++ G+ K QL + V LE+A + PVS+S+SSRTD GVHA
Sbjct: 6 RYLIFFQYIGTKYRGAVKVPPHQLGKKGVQDHLEDAIQRLRPVNPVSLSVSSRTDTGVHA 65
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
SN H D++R + + P ++ +A+N L +E I +T VP DFHARFR
Sbjct: 66 LSNSAHFDLQRKNDKL------PFTEDILVQALNFHLGTE-QIRITRAHRVPYDFHARFR 118
Query: 174 AQERTYFYRI---LSGPEPLSVFEKDRAWHV-TEELDLRAMQEACKVLVGCHDFSSFRAS 229
AQ RTY YRI +S L + + D W + EL++ AM EA +LVG HDFS+FRA
Sbjct: 119 AQSRTYVYRIALGISHHSLLPLTDWDLCWSLRNTELNVDAMHEAASLLVGTHDFSTFRA- 177
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFG-IRKK 288
+N D P + + + + G S + R++
Sbjct: 178 ---------------------------VNSDLPFKNPVKTMDVITIQQGNSFAYAHFRRE 210
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPM---APAC 345
+E+ ++SFLY QVR + G L AVG G L+V +++IL+A+ + A P APA
Sbjct: 211 IPFWELTFTSKSFLYKQVRRMTGALVAVGQGLLSVPQLKKILEARD-SLAYPQGMAAPAH 269
Query: 346 GLSLGFVKY 354
GL L V Y
Sbjct: 270 GLFLTRVDY 278
>gi|218508236|ref|ZP_03506114.1| tRNA pseudouridine synthase A [Rhizobium etli Brasil 5]
Length = 238
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 144/288 (50%), Gaps = 53/288 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I VEY G + G Q+Q N +V G +E A G+ VS+ + RTD+GVHA
Sbjct: 1 MPRYRITVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + E P ++ A+N L+ G+ + + DV VP F ARF A
Sbjct: 61 VIHADLSK-------EWSPYQ----LQNALNAHLRLAGERVSILDVEAVPEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FR++ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ S AL E+
Sbjct: 169 PVRTLDRLDVTR--SGALI--------------------------------------EIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAP 343
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAP 236
>gi|338737489|ref|YP_004674451.1| tRNA pseudouridine synthase A [Hyphomicrobium sp. MC1]
gi|337758052|emb|CCB63875.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Hyphomicrobium sp. MC1]
Length = 266
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 150/302 (49%), Gaps = 61/302 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY GT F G Q+Q ++ G+LE+A KF + V + + RTDAGVHA
Sbjct: 1 MPRYRITIEYDGTPFVGWQRQAQGLSIQGLLEDAIRKFSQETVGVRGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + + PG V R A+N L+ I + V ++F ARF A +
Sbjct: 61 VAHFDLSK--EWSPGRV---------RDAMNFHLRPH-PIGIVACAAVDAEFDARFSAIK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YR+L+ P + +++R W +ELD AM EA +VLVG HDF++FRA+ CQA SP
Sbjct: 109 RHYKYRLLTRRAP-PILDRNRVWWTMQELDAGAMHEAAQVLVGKHDFTTFRAAQCQAASP 167
Query: 237 IRTLDELHVS----EVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
++TLD +S E+V T
Sbjct: 168 VKTLDRFEISRDGDEIVCT----------------------------------------- 186
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
ARSFL+HQVR +VG LK VG G+ +D+ + L A A P+APA GL L V
Sbjct: 187 ---VSARSFLHHQVRSMVGSLKLVGEGKWARADLAKALAAANREACGPVAPASGLYLVAV 243
Query: 353 KY 354
Y
Sbjct: 244 NY 245
>gi|424915772|ref|ZP_18339136.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|392851948|gb|EJB04469.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 266
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 149/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G +E A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + P+ ++ A+N L+ G+ + + DV V F ARF A
Sbjct: 61 VIHADLSK--------AWSPYQ---LQNALNAHLRLAGERVSILDVEAVAEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FRA+ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ + E+
Sbjct: 169 PVRTLDRLDVT----------------------------------------RHGELIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLY--FLQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|254796418|ref|YP_003081254.1| tRNA pseudouridine synthase A [Neorickettsia risticii str.
Illinois]
gi|254589655|gb|ACT69017.1| tRNA pseudouridine synthase A [Neorickettsia risticii str.
Illinois]
Length = 243
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 154/296 (52%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY VEY+GT FSG QKQ++ +V LE + + ++++++ RTDAGVHA V
Sbjct: 2 RYKATVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQVF 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D R S +P +++ AVN+ L+ E I++ + V F ARF A R
Sbjct: 62 HFDA-RESTLQPFQIV---------NAVNYHLK-EKLIVLLKIEIVDETFDARFSAIRRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI++ P +VF ++R WHV +L+L M+E + LVG HDF SFR+S C A++ IR
Sbjct: 111 YQYRIINRKMPPAVF-RNRCWHVPWKLNLDFMREQAQHLVGRHDFQSFRSSKCGASNAIR 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD L V + NG +F A A
Sbjct: 170 TLDRLEVEK-----------------------------NGEEIIFH-----------ASA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+SFL+HQVR++VG L A+ +G+L VS E IL + A P AP+CGL L V Y
Sbjct: 190 KSFLHHQVRIMVGTLVAIASGKL-VSATE-ILSKRNRCYAGPTAPSCGLYLLKVDY 243
>gi|15887719|ref|NP_353400.1| tRNA pseudouridine synthase I [Agrobacterium fabrum str. C58]
gi|42559844|sp|Q8UIC9.1|TRUA_AGRT5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|15155280|gb|AAK86185.1| tRNA pseudouridine synthase I [Agrobacterium fabrum str. C58]
Length = 266
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 150/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q+Q N +V G LE A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTPYYGWQRQENGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPS-DFHARFRAQ 175
V H+D+ R + P+ +R A+N L G+ + + DF ARF A
Sbjct: 61 VAHIDLSRDWE--------PYK---LRNALNAHLAMAGEAVAVLDAAAVTEDFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ L++ E RAW V+++LD M EA ++LVG HDF++FR+ CQANS
Sbjct: 110 RRHYLYRIICRKSRLAL-EHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NGD-----------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G +T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGGMTPDDVRAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|399071350|ref|ZP_10749969.1| pseudouridylate synthase I [Caulobacter sp. AP07]
gi|398043537|gb|EJL36438.1| pseudouridylate synthase I [Caulobacter sp. AP07]
Length = 248
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 142/299 (47%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G +SG Q Q +V G +E A F GQ + I+ + RTD GVHA
Sbjct: 1 MPRYRLTIEYDGRPYSGFQAQAVLPSVQGAIEAAVKAFCGQELRIAAAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ER P E V A+N L E + V D P D+HARF A E
Sbjct: 61 VVHVDLERAW---PAE--------TVANALNAHLVREA-VSVLDAVVAPDDWHARFSANE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + + WHV + +D +AM A + LVG HDF++FR CQA SP
Sbjct: 109 RRYLYRILNRRAP-PALDVGKVWHVKKAIDAQAMHAAAQHLVGLHDFTTFRDMHCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD VS V G V H +
Sbjct: 168 LKTLDVARVSRV------------------------------GDEV------HLEFS--- 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+ QVR + G L VG G T DV L A+ TA P+APA GL L V Y+
Sbjct: 189 -ARSFLHRQVRSMTGTLAEVGVGRWTPDDVRTALDARDRTACGPVAPADGLYLTGVGYE 246
>gi|335033100|ref|ZP_08526472.1| tRNA pseudouridine synthase A [Agrobacterium sp. ATCC 31749]
gi|333795776|gb|EGL67101.1| tRNA pseudouridine synthase A [Agrobacterium sp. ATCC 31749]
Length = 266
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 150/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q+Q N +V G LE A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTPYYGWQRQENGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPS-DFHARFRAQ 175
V HVD+ R + P+ +R A+N L G+ + + DF ARF A
Sbjct: 61 VAHVDLSRDWE--------PYK---LRNALNAHLAMAGEAVAVLDAAAVTEDFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ L++ E RAW V++++D M EA ++LVG HDF++FR+ CQANS
Sbjct: 110 RRHYLYRIICRKSRLAL-EHKRAWWVSKDMDHERMHEAAQMLVGRHDFTTFRSVHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NGD-----------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G +T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGGMTPDDVRAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|83859280|ref|ZP_00952801.1| tRNA pseudouridine synthase A [Oceanicaulis sp. HTCC2633]
gi|83852727|gb|EAP90580.1| tRNA pseudouridine synthase A [Oceanicaulis alexandrii HTCC2633]
Length = 253
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 148/298 (49%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q+Q N +V G LE A K G P + + RTD+GVHA
Sbjct: 1 MPRYKLTIEYDGGPFVGWQRQDNGPSVQGALEAAAAKLDGGPREVYGAGRTDSGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+E+ LP + VR A+NH L+ +V VR V +FHARF+A
Sbjct: 61 VAHVDLEKD--------LP---ADKVRDAINHHLKPHPIAVVEAVR-VTDEFHARFKAHR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YR+ + PL++ + + W V + LD+ AM A + LVG HDF++FR S CQA+SP
Sbjct: 109 RGYIYRLHARRAPLTL-TRGQVWRVYQPLDVEAMHTAAQHLVGTHDFTTFRDSQCQADSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+++LD++ A+F S G + V
Sbjct: 168 VKSLDKI--------AVFHS----------------------GEEI----------HVTV 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFL+ QVR IVG L VG G+ T D + L A + P+AP GL L V Y
Sbjct: 188 EAISFLHRQVRSIVGSLVEVGLGKWTPEDFKAALDAADRSRCGPVAPPDGLYLSLVAY 245
>gi|402819881|ref|ZP_10869448.1| truA protein [alpha proteobacterium IMCC14465]
gi|402510624|gb|EJW20886.1| truA protein [alpha proteobacterium IMCC14465]
Length = 248
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 151/299 (50%), Gaps = 55/299 (18%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
QR+ + +EY GT F G Q Q V L EA +KF G+ V+++ + RTD GVHA V
Sbjct: 3 QRFKLIIEYEGTHFCGWQTQRGGGAVQDALSEAVYKFCGEEVNVNGAGRTDTGVHARGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H+D+E+ + D+S + RA+N L+ ++V + V ++F ARF A R
Sbjct: 63 AHLDLEKST-----------DASTLLRALNFHLKPH-PVVVLSAQLVDAEFDARFSALRR 110
Query: 178 TYFYRILS-GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
Y YR+LS P + E R W V ELD+ AMQ A L G HDF++FR+ CQA SP
Sbjct: 111 HYEYRVLSRRVRPTLLVE--RVWWVPVELDVDAMQAAAGRLTGRHDFTTFRSVQCQAASP 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+R+LD L V + +D + + A
Sbjct: 169 VRSLDRLDV-----------VAEDGEI-----------------------------RIRA 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG LK VG G+ + ++ L+A+ A +P+APA GL V Y+
Sbjct: 189 TARSFLHHQVRSMVGSLKLVGEGKWSADNLSAALEAQDRAACAPVAPAHGLYFMSVDYE 247
>gi|340027766|ref|ZP_08663829.1| tRNA pseudouridine synthase A [Paracoccus sp. TRP]
Length = 260
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 149/306 (48%), Gaps = 54/306 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF---IGQPVSISLSSRTDAGVHA 113
+ R+ + +EY G F+G Q Q + +V G +E A + Q I+ + RTDAGVHA
Sbjct: 1 MPRFALLIEYDGGPFAGWQAQADRPSVQGAVEAALARLDPGFAQGARIAAAGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D+ R D + A+N L+ + + V V +FHARF
Sbjct: 61 TGQVAHADLIR-----------DWDPFRLSEALNWHLKP-APVAILAVARVDDEFHARFS 108
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A ER Y +R++S PL+ ++ RAW V+ LDL AM+E L+G HDF++FR++ CQA
Sbjct: 109 AFERRYLFRLISRRAPLT-HDRGRAWQVSHPLDLAAMREGAAHLLGRHDFTTFRSTMCQA 167
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++TLDEL ++E +P G R Y
Sbjct: 168 KSPVKTLDELTITEAE-------------------------IPQG-----------REYR 191
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RARSFL++QVR IVG L+ VG G V L+A+ A P+ P GL L V
Sbjct: 192 FTLRARSFLHNQVRSIVGTLERVGAGSWPPDRVAEALEARDRAACGPVCPPQGLYLTGVS 251
Query: 354 YDLPED 359
Y P+D
Sbjct: 252 Y--PQD 255
>gi|254473752|ref|ZP_05087147.1| tRNA pseudouridine synthase A [Pseudovibrio sp. JE062]
gi|211957138|gb|EEA92343.1| tRNA pseudouridine synthase A [Pseudovibrio sp. JE062]
Length = 302
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 152/306 (49%), Gaps = 53/306 (17%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
R+ RY I ++Y G F G Q+Q N TV GV+E A F G+ V+I + RTD+GVHA
Sbjct: 26 RMPRYKITIDYDGRPFVGWQRQDNGPTVQGVIERAIKSFTGETVTIGGAGRTDSGVHATG 85
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D +SK P E V+ A+N Q + + + D F ARF A
Sbjct: 86 QVAHLD---LSKDWPAE--------TVKNALNFHAQPD-PVAILDCEKAGLGFDARFSAI 133
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y Y+I + EPL+ ++ AW+V ELD AM EA +VL+G HDF++FR + CQA S
Sbjct: 134 RRHYRYKIANRLEPLT-HDRGLAWYVKPELDAEAMNEAAQVLLGHHDFTTFRHTRCQAKS 192
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P +T++ + V G +VF +
Sbjct: 193 PWKTMERICVYRQ------------------------------GYHVF----------LE 212
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+RSFL++QVR +VG L+ VG G T D++ L+A A P+A GL L V Y
Sbjct: 213 CSSRSFLHNQVRSMVGSLRLVGEGRWTKDDLKAALEACDRKACGPVAVPEGLYLTQVDYR 272
Query: 356 LPEDDQ 361
PE+D+
Sbjct: 273 TPEEDE 278
>gi|227820646|ref|YP_002824616.1| tRNA pseudouridine synthase A [Sinorhizobium fredii NGR234]
gi|254764861|sp|C3MF26.1|TRUA_RHISN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|227339645|gb|ACP23863.1| tRNA pseudouridine synthase A [Sinorhizobium fredii NGR234]
Length = 247
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 152/299 (50%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G+ + G Q+Q N +V G +E+A G+ VSI + RTD+GVHA
Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQENGPSVQGAIEKAVLSLTGETVSIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H+D+ R K + +R A+N L + + + D VP +F ARF A
Sbjct: 61 VAHLDLTREWK-----------THTLRNALNAHLALAAERVSILDAAEVPPEFDARFSAI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E RAW V + LD AM EA + LVG HDF++FR++ CQANS
Sbjct: 110 RRHYLYRIISRRSPLAL-EARRAWWVPKTLDHEAMHEAAQHLVGHHDFTTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RT+D L V+ S +L E+
Sbjct: 169 PLRTIDRLDVT----------------------RSGEL------------------IEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A A+SFL++Q+R G LK VG G+ T D++ L+A+ A P+AP GL V Y
Sbjct: 189 ATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLKTALEARDRKACGPVAPPEGLFFMQVDY 247
>gi|254441675|ref|ZP_05055168.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 307]
gi|198251753|gb|EDY76068.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 307]
Length = 256
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 151/303 (49%), Gaps = 50/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q+Q + +V G +E A K + +I + RTDAGVHA
Sbjct: 1 MPRYALKIEYDGAPFCGWQRQTSDPSVQGAIEAALAKLEPRGHTIGAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+++ D+ + A+N L+ +V V+ V D+HARF A E
Sbjct: 61 VAHCDMDKT-----------WDAFRLSEALNFHLKPAPVSIVACVQ-VADDWHARFSALE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+++ PL V E + W V+++LD AMQ L+G HDF++FR++ CQA+SP
Sbjct: 109 RRYLFRLVNRRAPL-VLEAGKVWQVSQKLDGAAMQAGADRLLGHHDFTTFRSTVCQADSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L + +V + D + + +
Sbjct: 168 MRTLDGLDIEQVARS----------------DGAQE-------------------FRFHV 192
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G T DV L A+ TA P+ P GL L V Y
Sbjct: 193 RARSFLHNQVRSFVGTLERVGAGAWTRDDVSAALNARDRTACGPVCPPHGLYLASVGY-- 250
Query: 357 PED 359
PED
Sbjct: 251 PED 253
>gi|424873421|ref|ZP_18297083.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393169122|gb|EJC69169.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 272
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 149/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G +E A G+ VS+ + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGHSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + P+ ++ A+N L+ G+ + + DV F ARF A
Sbjct: 61 VIHADLSKD--------WSPYQ---LQNALNAHLRLAGERVSILDVEAAAEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FRA+ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ ++ E+
Sbjct: 169 PVRTLDRLDVT----------------------------------------RRGELIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++ D
Sbjct: 189 AAAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|414175564|ref|ZP_11429968.1| tRNA pseudouridine synthase A [Afipia broomeae ATCC 49717]
gi|410889393|gb|EKS37196.1| tRNA pseudouridine synthase A [Afipia broomeae ATCC 49717]
Length = 245
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 145/298 (48%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE+A GQ V ++ + RTDAGVHA
Sbjct: 1 MPRYKLLIEYDGAPFWGWQYQDKGPSVQGALEDAVKAMTGQDVRVNGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + + VR A+N L+ I V VP F ARF A +
Sbjct: 61 VAHIDLAKDYR-----------ADRVRDALNAHLRPH-PIGVLSAEIVPETFDARFSATK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L++ + AW V LD+ AMQEA +VL+G HDF++FR + CQA SP
Sbjct: 109 RHYIYRIVNHRANLAL-KAGHAWRVPRPLDVAAMQEAAQVLIGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD L V+ G +V +
Sbjct: 168 EKTLDALDVTR------------------------------DGDDV----------NITT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G T D+ R L+A+ TA P+AP GL L V+Y
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGHGRWTSGDLRRALEARDRTACGPVAPPDGLYLVRVEY 245
>gi|424879778|ref|ZP_18303410.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. trifolii
WU95]
gi|392516141|gb|EIW40873.1| pseudouridylate synthase I [Rhizobium leguminosarum bv. trifolii
WU95]
Length = 272
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 147/303 (48%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G +E A G+ V + + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGHSVQGAIEAAVLSLTGETVLVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + E P ++ A+N L+ G+ I + DV F ARF A
Sbjct: 61 VIHADLSK-------EWSPYQ----LQNALNAHLRLAGERISILDVEAATEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FRA+ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKVLDHEVMHAAAQRLVGKHDFSTFRAAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NG-----------ELIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F + D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARNRKACGPVAPPDGLY--FTQVD 246
Query: 356 LPE 358
PE
Sbjct: 247 YPE 249
>gi|294678738|ref|YP_003579353.1| tRNA pseudouridine synthase A [Rhodobacter capsulatus SB 1003]
gi|294477558|gb|ADE86946.1| tRNA pseudouridine synthase A [Rhodobacter capsulatus SB 1003]
Length = 255
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 152/303 (50%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ +EY G F+G Q+Q +V G +E A + +I+ + RTDAGVHA +
Sbjct: 1 MPRFAFRIEYDGGPFAGWQRQAVLPSVQGAVEAALARLEPGEHTIAAAGRTDAGVHATAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + D + A+NH L+ + +V R V DFHARF A+E
Sbjct: 61 VAHADLAK-----------DWDPFRLSEALNHHLRPDPVAIVACAR-VGDDFHARFSARE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R++S P+ V ++ + W V LD+ AM+E L+G HDF++FRA+ CQA SP
Sbjct: 109 RRYLFRLVSRRAPV-VHDRGKVWQVQNPLDVAAMREGAAQLIGLHDFTTFRAAMCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDE+ + E+ +P+G R Y
Sbjct: 168 VKTLDEITIEEIA-------------------------LPSG-----------REYRFHL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR IVG L+ VG G DV R L A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGAWAPEDVGRALAARDRAACGPVCPPQGLYLCGVGY-- 249
Query: 357 PED 359
PED
Sbjct: 250 PED 252
>gi|296115065|ref|ZP_06833707.1| tRNA pseudouridine synthase A [Gluconacetobacter hansenii ATCC
23769]
gi|295978402|gb|EFG85138.1| tRNA pseudouridine synthase A [Gluconacetobacter hansenii ATCC
23769]
Length = 283
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 153/310 (49%), Gaps = 61/310 (19%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVV-GVLEEAFHKFIG-QPVSISLSSRTDAGVH 112
K I+R+ + +EY G F G Q+Q + T V GVLE A + G +PV + RTD+GVH
Sbjct: 26 KNIRRWAVRIEYDGRDFVGWQRQASGLTSVQGVLEAAATRLTGGRPVISITAGRTDSGVH 85
Query: 113 AASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
A V H+D P ++ P S+ VR A+N+ ++ + + R V ++ ARF
Sbjct: 86 ATGQVAHLDF-------PDDI--PLSSTAVRDALNYHMKPH-RVAILIARPVLPNWSARF 135
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
A R+Y YRI++ ++ R WHV + LD+ M++A + L+G HDF++FRAS CQ
Sbjct: 136 SAILRSYRYRIINR-SARPTLDEGRVWHVRQPLDVDLMRQAAQFLIGRHDFTTFRASACQ 194
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP+RTLD L + HR
Sbjct: 195 AKSPVRTLDRLDI-------------------------------------------HREG 211
Query: 293 E---VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
E ++ AR+FL+HQVR + G LK VG G +V V + L A A P APA GL L
Sbjct: 212 EEIVIVTEARAFLHHQVRNMTGTLKMVGEGSWSVERVGQALAACDRRAGGPTAPAEGLYL 271
Query: 350 GFVKYDLPED 359
V Y PED
Sbjct: 272 TGVAY--PED 279
>gi|241202830|ref|YP_002973926.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240856720|gb|ACS54387.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 272
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 149/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G +E A G+ V + + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGHSVQGAIEAAVLSLTGETVLVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + E P ++ A+N L+ G+ + + +V P F ARF A
Sbjct: 61 VIHADLSK-------EWSPYQ----LQNALNAHLRLAGERVSILEVEAAPEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FRA+ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKVLDHEVMHAAAQRLVGKHDFSTFRAAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NG-----------ELIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>gi|260426957|ref|ZP_05780936.1| tRNA pseudouridine synthase A [Citreicella sp. SE45]
gi|260421449|gb|EEX14700.1| tRNA pseudouridine synthase A [Citreicella sp. SE45]
Length = 255
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 147/303 (48%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q + +V G +E A + + +I+ + RTDAGVHA
Sbjct: 1 MPRYALLVEYDGGPFAGWQRQADQPSVQGAIEAALARLEPREHTIAAAGRTDAGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + P D + A+N L+ + + V D+HARF A E
Sbjct: 61 VAHCDMAK-----------PWDPFRLSEALNFHLKP-APVAIRACAAVADDWHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L+ P + E + W V LDL AMQE L+G HDF++FR++ CQA SP
Sbjct: 109 RRYTFRLLARRAP-ATLEAGQVWRVMNPLDLGAMQEGAAHLLGLHDFTTFRSTMCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDE+ + E + A P Y
Sbjct: 168 VKTLDEIRIEECDTGA--------GP----------------------------EYRFHL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR IVG L+ VG G DV+ L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGSWAPEDVKHALEARDRAACGPVCPPDGLYLTGVGY-- 249
Query: 357 PED 359
P+D
Sbjct: 250 PDD 252
>gi|299132601|ref|ZP_07025796.1| tRNA pseudouridine synthase A [Afipia sp. 1NLS2]
gi|298592738|gb|EFI52938.1| tRNA pseudouridine synthase A [Afipia sp. 1NLS2]
Length = 245
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 143/298 (47%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY GT F G Q Q N +V G LE+A G V + + RTDAGVHA
Sbjct: 1 MPRYKLIIEYDGTPFCGWQYQDNGPSVQGALEDAVMAMTGSRVRVHGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+E+ + + VR A+N ++ I V VP F ARF A +
Sbjct: 61 VAHIDLEKTYR-----------ADRVRDALNAHVRPH-PIGVLSAEIVPDTFEARFSALK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + L+ + RAW V LD+ AM EA +VL+G HDF++FR + CQA SP
Sbjct: 109 RHYIYRISNRRANLA-LDAGRAWRVARPLDVAAMNEAAQVLIGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V IR + ++
Sbjct: 168 DKTLDQLDV---------------------------------------IRDGD-TVNIVT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G T +D+ + L A+ A P+AP GL L V Y
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGHGRWTAADMRKALDARNRAACGPVAPPDGLYLVKVDY 245
>gi|294085062|ref|YP_003551822.1| Pseudouridylate synthase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664637|gb|ADE39738.1| Pseudouridylate synthase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 254
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 140/298 (46%), Gaps = 55/298 (18%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
+R I +EY G F G Q+Q N TV LEEA F G+ +++ + RTD+GVHA V
Sbjct: 3 RRIFITIEYDGAPFVGWQRQDNGITVQQELEEAAFAFTGEKINVQGAGRTDSGVHALGQV 62
Query: 118 CHVDV-ERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H+DV E+ + + E L H S I V D VP D HARF A
Sbjct: 63 AHLDVPEKFAPNRVMEALNAHLSHTA-------------ISVLDAYEVPDDAHARFSAIG 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL +P + R WH + LD AMQ +L+G HDF+SFRA+ CQA S
Sbjct: 110 RRYLYRILPRRQP-PALDAGRVWHHKQPLDADAMQAGADMLIGRHDFNSFRAAQCQAESS 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IRTLD L V +V + + H E
Sbjct: 169 IRTLDILQVEQVSA------------------------------------EIHLHVE--- 189
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR I G L VGTG+ DV+ L A +AA P AP GL L V Y
Sbjct: 190 -ARSFLHHQVRNIAGTLALVGTGKWQPDDVKAALAAADRSAAGPTAPPHGLYLTDVFY 246
>gi|402490561|ref|ZP_10837350.1| tRNA pseudouridine synthase A [Rhizobium sp. CCGE 510]
gi|401810587|gb|EJT02960.1| tRNA pseudouridine synthase A [Rhizobium sp. CCGE 510]
Length = 270
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 147/303 (48%), Gaps = 57/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G +E A G+ V + + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGHSVQGAIEAAVRSLTGETVLVRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVER-ISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRA 174
V H D+ + S K ++ A+N L+ G+ + + V P F ARF A
Sbjct: 61 VVHADLSKDWSPYK------------LQNALNAHLRLAGEPVSILHVLEAPDFFDARFSA 108
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y YRILS PL++ E RAW V + LD M A + LVG HDFS+FRA+ CQAN
Sbjct: 109 LRRHYLYRILSRRAPLAL-EAGRAWWVPKVLDHEVMHAAAQKLVGRHDFSTFRAAHCQAN 167
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP+RTLD L V+ NG E+
Sbjct: 168 SPVRTLDRLDVTR-----------------------------NG-----------ELIEI 187
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++
Sbjct: 188 RATAQSFLHNQIRSFAGTLKLAGEGKWTPEDVEAALEARDRKACGPVAPPDGLY--FMQV 245
Query: 355 DLP 357
D P
Sbjct: 246 DYP 248
>gi|209886648|ref|YP_002290505.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM5]
gi|337739839|ref|YP_004631567.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM5]
gi|386028857|ref|YP_005949632.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM4]
gi|229557998|sp|B6JJP6.1|TRUA_OLICO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|209874844|gb|ACI94640.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM5]
gi|336093925|gb|AEI01751.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM4]
gi|336097503|gb|AEI05326.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM5]
Length = 245
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 145/296 (48%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY GT F G Q Q N +V G LE+A G V + + RTDAGVHA V
Sbjct: 3 RYKLLIEYDGTPFCGWQYQDNGPSVQGALEDAVAALAGTHVRVHGAGRTDAGVHALGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H+D+E+ + + VR A+N L+ I V VP F +RF A +R
Sbjct: 63 HIDLEKSYR-----------TDQVRDALNAHLRPH-PIGVLSAEIVPETFESRFSAVKRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI + L++ + RAW + LD+ AM EA +VLVG HDF++FR + CQA SP +
Sbjct: 111 YIYRISNRRANLAL-DLHRAWRIARTLDVAAMHEAAQVLVGRHDFTTFRDTECQAKSPEK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD+L V+ ++ + ++ A
Sbjct: 170 TLDQLDVT----------------------------------------REGDAVSIVTSA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+ QVR +VG L VG G T++D+ L A+ TA P+AP GL L V Y
Sbjct: 190 RSFLHSQVRSMVGSLVWVGHGRWTIADMRNALAARDRTACGPVAPPEGLYLVRVDY 245
>gi|372280015|ref|ZP_09516051.1| tRNA pseudouridine synthase A [Oceanicola sp. S124]
Length = 255
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 146/303 (48%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q + +V G +E A K +I+ + RTDAGVHA
Sbjct: 1 MPRYALQVEYHGGPFAGWQRQADQPSVQGAIEAALAKLEPGAHTIAAAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R D + A+N L+ + + V D+HARF AQE
Sbjct: 61 VAHCDLLR-----------DWDPFRLSEALNFHLKPL-PVAIRACALVAEDWHARFSAQE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L P + FE W V ++LD AM+E L+G HDF++FR+S CQA SP
Sbjct: 109 RRYLFRLLMRRAP-ATFEAGLVWQVKQDLDAAAMREGAAYLLGNHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDE+ + V P+G F +
Sbjct: 168 VKTLDEIRIEAVEG-------------------------PSGHELQFHL----------- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR IVG L+ VGTG V L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGTGAWAPEQVREALEARDRAACGPVCPPEGLYLAGVGY-- 249
Query: 357 PED 359
P+D
Sbjct: 250 PDD 252
>gi|260431135|ref|ZP_05785106.1| tRNA pseudouridine synthase A [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414963|gb|EEX08222.1| tRNA pseudouridine synthase A [Silicibacter lacuscaerulensis
ITI-1157]
Length = 255
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 144/304 (47%), Gaps = 49/304 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q +V G +E A K +I+ + RTDAGVHA
Sbjct: 1 MPRYALKVEYQGEPFAGWQRQKELPSVQGAIEAALSKLQPGSHTIAAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+E+ D + A+N+ L+ + + V D+HARF A E
Sbjct: 61 VAHCDLEK-----------DWDPFRLSEALNYHLKPL-PVAILKAAQVADDWHARFSAIE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + +K + W + LD+ AMQE +L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRILIRRAP-ATHDKGQVWQIGHPLDVAAMQEGADMLIGRHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL V +V G + V
Sbjct: 168 VKTLDELRVEQVQ----------------------------------GFSGPEVHFHV-- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G T DV L+A A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWTPQDVRDALEATDRAACGPVCPPQGLYLARVGYPD 251
Query: 357 PEDD 360
P D
Sbjct: 252 PVFD 255
>gi|429206306|ref|ZP_19197574.1| tRNA pseudouridine synthase A [Rhodobacter sp. AKP1]
gi|428191027|gb|EKX59571.1| tRNA pseudouridine synthase A [Rhodobacter sp. AKP1]
Length = 255
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 142/298 (47%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q +V G +E A + P +I+ + RTD GVHA
Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAALASVQGAIETALGRLEPGPHTIAAAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R D + A+N L+ +V R VP +FHARF A E
Sbjct: 61 VAHCDLAR-----------EWDPFRLAGALNAHLKPLPVAIVAAAR-VPEEFHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L+ P V ++ R W V LD AM+ LVG HDF++FRA+GCQA SP
Sbjct: 109 RRYLFRLLARRAP-EVHDRGRVWRVPHSLDAEAMRAGAAHLVGRHDFTTFRAAGCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L L +++ + NG Y
Sbjct: 168 VKTLDAL-------------------TLETVEGA------NG-----------TEYRFRL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR IVG L+ VG G T V L A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPPQGLYLTGVGY 249
>gi|126736576|ref|ZP_01752316.1| tRNA pseudouridine synthase A [Roseobacter sp. CCS2]
gi|126713889|gb|EBA10760.1| tRNA pseudouridine synthase A [Roseobacter sp. CCS2]
Length = 255
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 145/303 (47%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q + +V G +E A K + +I+ + RTDAGVHA
Sbjct: 1 MPRYALLVEYHGAPFAGWQRQNDQPSVQGAIEAALAKLEPRDHTIAAAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ER D + A+N L+ + + + V D+HARF A E
Sbjct: 61 VAHCDMER-----------DWDPFRLSEALNFHLKP-APVAIVNCAQVADDWHARFDAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R++S PL+ + + W V LD AMQ L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRLMSRRAPLTS-DAGQMWRVKHPLDADAMQAGADQLLGQHDFTTFRSSICQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V +P+ Y
Sbjct: 168 VKTLDALRVE---------------------------ALPHANGT---------EYRFHV 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG T DV + L AK +A P+ P GL L VKY
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAEAWTPDDVGKALAAKDRSACGPVCPPQGLYLAAVKY-- 249
Query: 357 PED 359
PE+
Sbjct: 250 PEN 252
>gi|407788274|ref|ZP_11135407.1| tRNA pseudouridine synthase A [Celeribacter baekdonensis B30]
gi|407197757|gb|EKE67808.1| tRNA pseudouridine synthase A [Celeribacter baekdonensis B30]
Length = 261
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 139/298 (46%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G FSG Q+Q +V +EEA K I + RTDAGVHA+
Sbjct: 1 MPRYALLIEYNGAPFSGWQRQKQHPSVQQAVEEALRKLEPDCPGIGAAGRTDAGVHASGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + D + A+NH L+ ++ R V D+HARF A E
Sbjct: 61 VAHCDMTK-----------EWDPFRLSEALNHHLKPAPVAILHAAR-VADDWHARFSAHE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R++S PL V E +AWH+ LD MQ L+G HDF++FR++ CQA+SP
Sbjct: 109 RRYMFRLISRRAPL-VHEAGKAWHINHPLDRDRMQAGADRLIGLHDFTTFRSTMCQADSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDE + +P G Y
Sbjct: 168 VKTLDEFRI-------------------------EAHAIPYG-----------TEYRFYL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR VG L+ VG G T DV L+A A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSWTPQDVTTALEACDRAACGPVCPPQGLYLMGVGY 249
>gi|407776881|ref|ZP_11124153.1| tRNA pseudouridine synthase A [Nitratireductor pacificus pht-3B]
gi|407301577|gb|EKF20697.1| tRNA pseudouridine synthase A [Nitratireductor pacificus pht-3B]
Length = 247
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 145/297 (48%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ I +EY G + G Q+Q N +V +E A F G+ V++ + RTD GVHA + V
Sbjct: 3 RFRIDIEYDGGPYFGWQRQANHHSVQAAIETAIAAFSGETVTLFGAGRTDTGVHALAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ R + V+ A+N H ++ + + V DF ARF A+ R
Sbjct: 63 HFDLSRHWTGR-----------TVQNALNAHLAMADETVAIIAAEEVAGDFDARFSAKGR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + AWHV LD AM A + LVG +DF++FRA+ CQA SPI
Sbjct: 112 HYLYRIHNRRPPLTV-GRVHAWHVAAPLDAEAMHAAAQRLVGTYDFTTFRAAQCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TL+ L V+ +D ++ E+ A
Sbjct: 171 KTLERLDVT------------RDGEMV----------------------------EIRAS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL++QVR G LK VG G T +DV R L+A+ A P+AP GL L V Y
Sbjct: 191 ARSFLHNQVRSFAGTLKRVGEGGWTAADVTRALEARDRKACGPVAPPHGLYLVKVDY 247
>gi|254454857|ref|ZP_05068294.1| tRNA pseudouridine synthase A [Octadecabacter arcticus 238]
gi|198269263|gb|EDY93533.1| tRNA pseudouridine synthase A [Octadecabacter arcticus 238]
Length = 256
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 148/303 (48%), Gaps = 50/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q+Q + +V G +E A K + I + RTDAGVHA
Sbjct: 1 MPRYALKIEYDGAPFCGWQRQTSDPSVQGAIEAALAKLEPREHKIGAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+++ D+ + A+N L+ I + V D+HARF A E
Sbjct: 61 VAHCDMDKA-----------WDAFRLSEALNFHLKP-APISIVACAQVSDDWHARFSALE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+++ PL V E + W V ++LD MQ L+G HDF++FR++ CQA+SP
Sbjct: 109 RRYLFRLVNRRAPL-VLEVGKVWQVGQKLDGALMQAGADRLLGHHDFTTFRSTVCQADSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L V +V + +D + + ++
Sbjct: 168 MRTLDGLKVQQV----------------TRVDGAQE-------------------FQFHV 192
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G T DV L A+ TA P+ P GL L V Y
Sbjct: 193 RARSFLHNQVRSFVGTLERVGAGAWTPDDVTAALNARDRTACGPVCPPHGLYLAGVSY-- 250
Query: 357 PED 359
PED
Sbjct: 251 PED 253
>gi|241896974|ref|NP_001028662.1| tRNA pseudouridine synthase-like 1 [Mus musculus]
gi|218525914|sp|A2ADA5.1|PUSL1_MOUSE RecName: Full=tRNA pseudouridine synthase-like 1; AltName:
Full=tRNA pseudouridylate synthase-like 1; AltName:
Full=tRNA-uridine isomerase-like 1
Length = 291
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 162/307 (52%), Gaps = 44/307 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVL---EEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ ++Y+GT F+G VGVL EEA + PV ++SSRTDAGVHA
Sbjct: 13 RYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+D++R +PG+ P VV +A+N L+ I V VP+DFHAR A
Sbjct: 73 SNAAHLDIQR----RPGQ--SPFSPEVVAKALNTHLKHPA-IRVLKAFRVPNDFHARHAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHV-TEELDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G P L VFE++ W + TE LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
+ +RTL + VS +S +P G ++ +
Sbjct: 186 SPVTNTVRTLRRVSVSP--------------------GPASPFVLPEGS-------RRLQ 218
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 219 FWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGLF 278
Query: 349 LGFVKYD 355
L V YD
Sbjct: 279 LKSVLYD 285
>gi|329890848|ref|ZP_08269191.1| tRNA pseudouridine synthase A [Brevundimonas diminuta ATCC 11568]
gi|328846149|gb|EGF95713.1| tRNA pseudouridine synthase A [Brevundimonas diminuta ATCC 11568]
Length = 249
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 142/299 (47%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY VEY G+ ++G Q QL TV G +E A F GQ V I+ + RTD GVHA
Sbjct: 1 MPRYRFTVEYDGSAYNGFQAQLGQPTVQGAIETAITAFSGQAVRIAAAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
CHVD+ER + V A+N L E + V D V D+HARF A
Sbjct: 61 TCHVDLER-----------DWPAQTVMNALNAHLVKEA-VAVLDCTPVSDDWHARFTANG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P ++ R WHV + LD AM A + L+G HDF++FR + CQ+ SP
Sbjct: 109 RKYLYRILNRPG-RPALDRGRVWHVRKPLDAEAMHAAAQALIGLHDFTTFRDAACQSASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TLD VS V G V H +E
Sbjct: 168 IKTLDVARVSRV------------------------------GEEV------HLVFE--- 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+ QVR + G + VG G +D+ L+A+ P+AP+ GL L V Y+
Sbjct: 189 -ARSFLHRQVRSMAGSIAEVGLGRWRPADLADALEARDRARCGPVAPSDGLYLTGVTYE 246
>gi|329114449|ref|ZP_08243211.1| tRNA pseudouridine synthase A [Acetobacter pomorum DM001]
gi|326696525|gb|EGE48204.1| tRNA pseudouridine synthase A [Acetobacter pomorum DM001]
Length = 262
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 152/300 (50%), Gaps = 52/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+QR+ + +EY GT G Q+Q + +V +LE A + G +PVS + RTD+GVHA +
Sbjct: 9 VQRWAVKLEYDGTGLVGWQRQKSGLSVQSLLEAAAARLAGNRPVSSITAGRTDSGVHALA 68
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P +V S VR +++ L+ +++V D V +D+ ARF A
Sbjct: 69 QVAHLDF-------PADVRFSRHS--VREGLSYHLKPH-NVVVLDAVQVDTDWSARFSAT 118
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R+Y YRIL+ ++ + WHV LD+ MQEA +LVG HDF+SFRA CQA+S
Sbjct: 119 WRSYQYRILNRRSRPTLLAGN-VWHVKSTLDVEKMQEAANILVGPHDFTSFRAVACQAHS 177
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD+L VS G V V
Sbjct: 178 PMRTLDQLDVSR------------------------------HGDEVL----------VF 197
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A+ARSFL+HQVR +VG LK VG G V L+A+ AA P AP GL L V YD
Sbjct: 198 AKARSFLHHQVRNMVGTLKLVGIGAWQPERVAEALEARNRCAAGPTAPPEGLYLNGVGYD 257
>gi|332559018|ref|ZP_08413340.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides WS8N]
gi|332276730|gb|EGJ22045.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides WS8N]
Length = 255
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 143/298 (47%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q +V G +E A + P +I+ + RTD GVHA
Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R D + A+N L+ +V R VP +FHARF A E
Sbjct: 61 VAHCDLARDW-----------DPFRLAGALNAHLKPLPVAIVAAAR-VPEEFHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L+ P V ++ R W V LD AM+ LVG HDF++FRA+GCQA SP
Sbjct: 109 RRYLFRLLARRAP-EVHDRGRVWRVPHPLDAEAMRAGAAHLVGRHDFTTFRAAGCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TLD L L +++ GM NG Y
Sbjct: 168 IKTLDAL-------------------TLETVE-----GM-NG-----------TEYRFHL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR IVG L+ VG G T V L A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPPQGLYLTGVGY 249
>gi|188580854|ref|YP_001924299.1| tRNA pseudouridine synthase A [Methylobacterium populi BJ001]
gi|238692887|sp|B1ZGA6.1|TRUA_METPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|179344352|gb|ACB79764.1| tRNA pseudouridine synthase A [Methylobacterium populi BJ001]
Length = 252
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 141/300 (47%), Gaps = 51/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q+Q + TV +E A +F G+ ++ + RTDAGVHA
Sbjct: 1 MPRYKLVIEYDGGPFCGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ R + + VR A+N L+ + I + V DF AR A
Sbjct: 61 VAHLDLARDWR-----------TDTVRDALNAHLRPQ-PIAIVSAEVVTHDFDARHSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + + WHV LD M A + L+G HDFS+FRA+ CQA SP
Sbjct: 109 RHYRYRILNRRSP-AALTRAHVWHVPWPLDADLMHAAAQRLLGRHDFSAFRAAECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTL++L V+ LF I VIA
Sbjct: 168 VRTLEQLDVTR-QRMGLFEEI------------------------------------VIA 190
Query: 297 -RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR + G L G L+ DV IL K P+APACGL+ V YD
Sbjct: 191 TSARSFLHHQVRAMAGTLMLAGCRRLSADDVAEILATKAKHRCGPLAPACGLTFVGVDYD 250
>gi|405377557|ref|ZP_11031498.1| pseudouridylate synthase I [Rhizobium sp. CF142]
gi|397325994|gb|EJJ30318.1| pseudouridylate synthase I [Rhizobium sp. CF142]
Length = 268
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 147/301 (48%), Gaps = 55/301 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY G + G Q+Q N +V G +E+A G VS+ + RTD+GVHA V
Sbjct: 3 RYRMIVEYDGGPYVGWQRQDNGPSVQGAIEKAIFSASGDTVSVRGAGRTDSGVHAMGQVI 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
H D+ + P ++ + A+N L+ G+ + + DV F ARF A R
Sbjct: 63 HADLSK--DWSPFKL---------QNALNAHLKLAGEKVAILDVETASEFFDARFSALRR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FR++ CQANSP+
Sbjct: 112 HYLYRIISRRAPLAL-EAGKAWWVPKILDHEVMHAAAQTLVGKHDFSTFRSAHCQANSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTLD L V+ S +L E+ A
Sbjct: 171 RTLDRLDVTR----------------------SGEL------------------IEIRAT 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A+SFL++Q+R G LK G G+ T DV L A+ A P+AP GL F++ D P
Sbjct: 191 AQSFLHNQIRSFAGTLKLAGEGKWTPDDVRAALDARDRKACGPVAPPDGLY--FMQVDYP 248
Query: 358 E 358
E
Sbjct: 249 E 249
>gi|443707120|gb|ELU02874.1| hypothetical protein CAPTEDRAFT_109251, partial [Capitella teleta]
Length = 264
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 148/298 (49%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q N +V +E+A F GQ V++ + RTD+GVHA +
Sbjct: 1 LPRYRLTVEYDGRSFAGWQRQDNAPSVQDTIEKAIQAFSGQKVTLFCAGRTDSGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D++R E L ++RA N L + I++ V DF ARF A E
Sbjct: 61 VAHFDLDR-------EWL----GEKIQRATNAHLH-KFPIVIRAAEEVEPDFDARFWALE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YR+L+ P P + ++ R+WH+ + LD+ AM+ L+G HDF++FRAS CQA P
Sbjct: 109 RRYLYRLLNRPCP-TALDRGRSWHIYKPLDIEAMRAGAAHLIGFHDFTTFRASSCQAKDP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLDE+ +ID ++
Sbjct: 168 AKTLDEI----------------------TID------------------RERDEIHFRF 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
R+RSFL+ QVR +VG LK VG G+ + IL A+ +AP+ GL L V+Y
Sbjct: 188 RSRSFLHRQVRSMVGSLKQVGEGKFPPEWIADILAARNRRVCGVVAPSEGLYLSGVRY 245
>gi|163747262|ref|ZP_02154617.1| tRNA pseudouridine synthase A [Oceanibulbus indolifex HEL-45]
gi|161379537|gb|EDQ03951.1| tRNA pseudouridine synthase A [Oceanibulbus indolifex HEL-45]
Length = 257
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 147/299 (49%), Gaps = 51/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q++ TV G +E A + +I+ + RTD GVH
Sbjct: 1 MPRYALKIEYHGAPFNGWQRQVDLPTVQGFIEAALARLEPGAHTIAAAGRTDTGVHGLGQ 60
Query: 117 VCHVDVER-ISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ R S + GE A+N+ L+ + I +TD P DFHARF A
Sbjct: 61 VAHCDMARDWSPFRLGE------------ALNYHLKPQ-PIAITDCVLAPEDFHARFSAL 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
ER Y + ILS P +V + W V LD+ AMQ A +LVG HDF++FR++ CQA S
Sbjct: 108 ERRYHFCILSRRAP-AVHQAGLVWQVKHRLDVEAMQAAADLLVGKHDFTTFRSTICQAVS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P++TLD L V EV + G+ Y
Sbjct: 167 PVKTLDRLDVREVETAT--------------------------GTE----------YHFD 190
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR VG L+ VG G +V+D+ L AK A P+ P GL L V Y
Sbjct: 191 VRARSFLHNQVRSFVGTLERVGAGSWSVADMGAALAAKDRAACGPVCPPHGLYLAHVSY 249
>gi|315122856|ref|YP_004063345.1| tRNA pseudouridine synthase A [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496258|gb|ADR52857.1| tRNA pseudouridine synthase A [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 247
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 151/296 (51%), Gaps = 52/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G+ + G Q+Q N ++ G +E+A G+ +++ + RTD+GVHA V
Sbjct: 3 RYCLIIEYDGSGYVGWQRQKNGVSIQGEIEKAIFLVTGESMTVYGAGRTDSGVHALRQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D+ R E +P + +A+N L DI + ++ V FHARF A R+
Sbjct: 63 HFDLVR-------EWVPEK----LCKALNAHLNISNDISILELCVVDEKFHARFSAIRRS 111
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI++ PL++ EK RAW ++LD M+ A + L+G HDF++FR+ CQA SPIR
Sbjct: 112 YLYRIITRQAPLAL-EKGRAWWFPKDLDCEMMRVAAQHLIGKHDFTTFRSVQCQALSPIR 170
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+D L ++ + G + E+ A
Sbjct: 171 TIDRLDINRL------------------------------GDMI----------EIRVVA 190
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+ Q+R VG LK VG + T D+++ LKA+ A P++P+ GL V+Y
Sbjct: 191 RSFLHTQIRSFVGSLKLVGDRKWTSDDLQKALKAQDRKACGPLSPSEGLYFDSVEY 246
>gi|16124533|ref|NP_419097.1| tRNA pseudouridine synthase A [Caulobacter crescentus CB15]
gi|221233219|ref|YP_002515655.1| tRNA pseudouridine synthase A [Caulobacter crescentus NA1000]
gi|42559871|sp|Q9ABF0.1|TRUA_CAUCR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254789610|sp|B8GYF0.1|TRUA_CAUCN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|13421415|gb|AAK22265.1| tRNA pseudouridine synthase [Caulobacter crescentus CB15]
gi|220962391|gb|ACL93747.1| tRNA pseudouridine synthase A [Caulobacter crescentus NA1000]
Length = 247
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 139/296 (46%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY G ++G Q Q +V G +E A F GQ V I+ + RTD GVHA V
Sbjct: 3 RYRLLVEYDGRPYAGFQAQATLPSVQGAIEAAVKAFCGQEVRIAAAGRTDTGVHATGQVV 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD++ K P + V A+N L E + + +HARF A ER
Sbjct: 63 HVDLD---KDWPAQ--------TVFNALNAHLTREA-VSILSAEVAEEGWHARFSANERR 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRIL+ P +K R WH+ ++LD AM A + L+G HDF++FR CQ+ SP++
Sbjct: 111 YLYRILNRRAP-PALDKGRVWHMKKDLDHEAMHAAAQHLIGLHDFTTFRDMHCQSKSPVK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD V V G + H +E A
Sbjct: 170 TLDVARVRRV------------------------------GEEI------HLDFE----A 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+ QVR + G L VG G TV DV+ L+A+ P+APA GL L V Y
Sbjct: 190 RSFLHRQVRSMTGTLVEVGAGRWTVDDVKAALEARDRRECGPVAPADGLYLVGVGY 245
>gi|77464142|ref|YP_353646.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides 2.4.1]
gi|123591335|sp|Q3J0D9.1|TRUA_RHOS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|77388560|gb|ABA79745.1| tRNA pseudouridine synthase [Rhodobacter sphaeroides 2.4.1]
Length = 255
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 145/298 (48%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q +V G +E A + P +I+ + RTD GVHA+
Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHASGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R D + A+N L+ +V R VP +FHARF A E
Sbjct: 61 VAHCDLVR-----------EWDPFRLAGALNAHLKPLPVAIVAAAR-VPEEFHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L+ P V ++ R W V LD AM+ LVG HDF++FRA+GCQA SP
Sbjct: 109 RRYLFRLLARRAP-EVHDRGRVWRVPHPLDPEAMRAGAAHLVGRHDFTTFRAAGCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L L +++ GM NG Y
Sbjct: 168 VKTLDAL-------------------TLETVE-----GM-NG-----------TEYRFHL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR IVG L+ VG G T V L A+ A P++P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVSPPQGLYLTGVGY 249
>gi|429768810|ref|ZP_19300942.1| tRNA pseudouridine synthase A [Brevundimonas diminuta 470-4]
gi|429188467|gb|EKY29348.1| tRNA pseudouridine synthase A [Brevundimonas diminuta 470-4]
Length = 249
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 142/299 (47%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY +EY G+ ++G Q Q + TV G +E A F GQ V I+ + RTD GVHA
Sbjct: 1 MPRYRFTIEYDGSAYNGFQAQTDQPTVQGAIETAIAAFSGQSVRIAAAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
CHVD+ER + V A+N L E + V D V D+HARF A
Sbjct: 61 TCHVDLER-----------DWPAQTVMNALNAHLVKEA-VAVLDCTPVSDDWHARFTATG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P ++ R WHV + LD AM A + L+G HDF++FR + CQA SP
Sbjct: 109 RKYLYRILNRPG-RPALDQGRVWHVKKPLDAEAMHAAAQALIGQHDFTTFRDAACQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD V+ V G V ++
Sbjct: 168 VKTLDVARVARV------------------------------GEEV----------HLVF 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+ARSFL+ QVR + G + VG G + +D+ L AK P+AP+ GL L V Y+
Sbjct: 188 KARSFLHRQVRSMAGSIAEVGLGRWSPADLGEALAAKDRARCGPVAPSDGLYLTGVTYE 246
>gi|147903104|ref|NP_001085529.1| tRNA pseudouridine synthase-like 1 [Xenopus laevis]
gi|82236585|sp|Q6GQ53.1|PUSL1_XENLA RecName: Full=tRNA pseudouridine synthase-like 1; AltName:
Full=tRNA pseudouridylate synthase-like 1; AltName:
Full=tRNA-uridine isomerase-like 1
gi|49115069|gb|AAH72895.1| MGC80334 protein [Xenopus laevis]
Length = 298
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/321 (34%), Positives = 167/321 (52%), Gaps = 49/321 (15%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKF--IGQPVSISLSSRTDAGVHA 113
RYL+ +Y GT++SG + ++V+GV LE A K +G + +SSRTD+GVHA
Sbjct: 7 RYLVFFQYYGTKYSGVMETPITQSVLGVQNYLEVAAQKLRPVGT-IKFFISSRTDSGVHA 65
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
N+ HVD+ER + PP ++ +A+NH LQ E ++ +R V +FHAR
Sbjct: 66 ICNLAHVDIERAKGK------PPFTEEILVQAMNHHLQPEPIRLLKAIR-VCDNFHARHN 118
Query: 174 AQERTYFYRILSG---PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASG 230
A RTY YR+ +G PE L VFE + W + + L++ A+ EA K+L+G H+FS+FR++
Sbjct: 119 ALSRTYVYRVAAGCSRPE-LPVFEGNLCWAIQDGLNVTAINEASKMLLGTHNFSAFRSAN 177
Query: 231 CQA--NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
+ SPI+TL + + IN +L+ S L
Sbjct: 178 SENAFKSPIKTLQQ------------ADINPSCGILTHHWQSRNL--------------- 210
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK--TVTAASPMAPACG 346
+ ++ RARSFLY QVR + G L AVG G LT ++ L+ + + +AP G
Sbjct: 211 -QFWDFTFRARSFLYKQVRRMTGALVAVGQGRLTPQQIKEFLENQDPNCFLGNFVAPPHG 269
Query: 347 LSLGFVKYDLPEDDQTDAAES 367
L L V+YD E + A E+
Sbjct: 270 LFLKDVEYDGTELNGFSAEET 290
>gi|374329408|ref|YP_005079592.1| tRNA pseudouridine synthase A [Pseudovibrio sp. FO-BEG1]
gi|359342196|gb|AEV35570.1| tRNA pseudouridine synthase A [Pseudovibrio sp. FO-BEG1]
Length = 276
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 151/305 (49%), Gaps = 53/305 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I ++Y G F G Q+Q N TV GV+E A F G+ V+I + RTD+GVHA
Sbjct: 1 MPRYKITIDYDGRPFVGWQRQDNGPTVQGVIERAIKSFTGETVTIGGAGRTDSGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D +SK P E V+ A+N Q + + + D F ARF A
Sbjct: 61 VAHLD---LSKDWPAE--------TVKNALNFHAQPD-PVAILDCEKAGLGFDARFSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y+I + EPL+ ++ AW+V ELD AM EA ++L+G HDF++FR + CQA SP
Sbjct: 109 RHYRYKIANRLEPLT-HDRGLAWYVKPELDAEAMNEAAQMLLGHHDFTTFRHTRCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+T++ + V G +VF +
Sbjct: 168 WKTMERICVYRQ------------------------------GYHVF----------LEC 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
+RSFL++QVR +VG L+ VG G T D++ L+A A P+A GL L V Y
Sbjct: 188 SSRSFLHNQVRSMVGSLRLVGEGRWTKDDLKAALEACDRKACGPVAVPEGLYLTQVDYRT 247
Query: 357 PEDDQ 361
PE+D+
Sbjct: 248 PEEDE 252
>gi|409435830|ref|ZP_11263038.1| tRNA pseudouridine synthase A [Rhizobium mesoamericanum STM3625]
gi|408752588|emb|CCM74185.1| tRNA pseudouridine synthase A [Rhizobium mesoamericanum STM3625]
Length = 266
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 147/302 (48%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G + G Q+Q N +V G +E+A G+ VSI + RTD+GVHA
Sbjct: 1 MHRYRMIVEYDGGPYVGWQRQENGPSVQGAIEKAILSASGENVSIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ R + + ++ A+N L+ G+ + + V + F ARF A
Sbjct: 61 VVHADLAREWQ-----------AFKLQNALNAHLKMAGERVAIISVEVTSAFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD AM A + LVG HDFS+FR++ CQANS
Sbjct: 110 RRHYLYRIISRRAPLAL-ESGKAWWVPKTLDHEAMHAAAQTLVGKHDFSTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIRTLD L V+ NG E+
Sbjct: 169 PIRTLDRLDVTR-----------------------------NG-----------ELIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G + T DV L A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGELKWTPDDVRAALDARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LP 357
P
Sbjct: 247 YP 248
>gi|281202734|gb|EFA76936.1| hypothetical protein PPL_09688 [Polysphondylium pallidum PN500]
Length = 275
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 159/293 (54%), Gaps = 39/293 (13%)
Query: 81 RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVE-RISKRKPGE---VLPP 136
+ V VLEE+ FI + V + SSRTD GV+A V H DV+ RISK GE ++PP
Sbjct: 8 KPVQQVLEESLEVFIRKKVRLVGSSRTDTGVNALHQVAHFDVDTRISKT--GEEIDMMPP 65
Query: 137 HDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPE-PLSVFE- 194
V+ A+N +Q + V V FH+RF A+ RTY YR+L G + FE
Sbjct: 66 E---VITMALNQNVQGYP-VRVISTEIVDDSFHSRFSAKSRTYLYRMLGGMHRNQAPFEL 121
Query: 195 KDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALF 254
KDR W VT +LD+ MQEA +L G H+F+SFR+S CQA++P+RT+ V ++ + ++
Sbjct: 122 KDRVWAVTNQLDVPKMQEAATLLCGRHNFNSFRSSKCQADNPVRTISSFQVFDLPNPDIW 181
Query: 255 SSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLK 314
NS+ LG+ + GI K AR+FL++QVR++V L+
Sbjct: 182 QY------------NSAPLGV---NPQLIGIEVK---------ARAFLHNQVRIMVSTLE 217
Query: 315 AVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPEDDQTDAAES 367
VG+ ++++ ++ ++ AK A P AP L+L V Y ED+ T+ S
Sbjct: 218 RVGSHQMSLDQLQELIDAKDRQKAPPTAPPYPLTLTKVSY---EDNITNPLPS 267
>gi|84683526|ref|ZP_01011429.1| tRNA pseudouridine synthase A [Maritimibacter alkaliphilus
HTCC2654]
gi|84668269|gb|EAQ14736.1| tRNA pseudouridine synthase A [Maritimibacter alkaliphilus
HTCC2654]
Length = 257
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 144/300 (48%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G FSG Q+Q + +V G +E A K SI+ + RTDAGVHA
Sbjct: 1 MPRYALKIEYDGRPFSGWQRQKDQPSVQGAVEAALGKLEADVPSIAAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVR--RAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V D+++ D + R A+N+ L+ + + + V FHARF A
Sbjct: 61 VATCDLQK-------------DWTPFRLTEALNYHLKPD-RVAIVACALVDDGFHARFSA 106
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
ER Y +R++S PL V ++ AW V + LD AMQ L+G HDF++FR++ CQA+
Sbjct: 107 IERQYLFRLISRRAPL-VHDRGNAWRVVQALDADAMQAGADRLIGRHDFTTFRSTMCQAD 165
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP++TLDEL V L P G Y
Sbjct: 166 SPVKTLDELRV-------------------------ETLPYPGG-----------TEYRF 189
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR VG L+ VG G + DV L+A+ A P+ P GL L V Y
Sbjct: 190 HVRARSFLHNQVRSFVGTLERVGAGSWSPDDVTAALEARDRAACGPVCPPDGLYLARVGY 249
>gi|410989912|ref|XP_004001197.1| PREDICTED: tRNA pseudouridine synthase-like 1 [Felis catus]
Length = 307
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 164/324 (50%), Gaps = 46/324 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + +GV LEEA + PV ++SSRTDAGVHA
Sbjct: 11 RYLVYFQYLGTEFNGVAAIRGSQRAIGVQNYLEEAAKRLNSVVPVKFTISSRTDAGVHAL 70
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S + PP V+ A+N L+ I V VP DFHAR A
Sbjct: 71 SNAAHLDVQRRSGQ------PPFSPEVLAEALNAHLRHPA-IRVLQAFRVPIDFHARHAA 123
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G P+ LSVFE++R W + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 124 TSRTYLYRLATGCHRPDQLSVFERNRCWALRAGCLDVEAMQEAAQHLLGTHDFSAFQSAG 183
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
S +RTL VS + SP + +N +
Sbjct: 184 SPVVSSVRTLRRASVSP----------DLGSPFVLPQENRLQF----------------- 216
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA--ASPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 217 -WNLEFESQSFLYRQVRRMTAVLVAVGLGALMPAQVKVILESRDPLGRHQTRVAPAHGLF 275
Query: 349 LGFVKYDLPEDDQTDAAESLETCP 372
L V+Y T A+ + CP
Sbjct: 276 LKSVQYG-SLGFTTWEAQIIPRCP 298
>gi|150395284|ref|YP_001325751.1| tRNA pseudouridine synthase A [Sinorhizobium medicae WSM419]
gi|166229839|sp|A6U5I6.1|TRUA_SINMW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|150026799|gb|ABR58916.1| tRNA pseudouridine synthase A [Sinorhizobium medicae WSM419]
Length = 247
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 149/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + VEY GT + G Q+Q N +V G +E+A G+ V + + RTD+GVHA V
Sbjct: 3 RFRLIVEYDGTDYVGWQRQDNGPSVQGAIEKAVLSLTGETVRVRGAGRTDSGVHARGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
H+D+ R K P+ ++ A+N L G+ + + +V +DF ARF A R
Sbjct: 63 HLDLTRAWK--------PY---TLQNALNAHLSLAGERVSILEVEEAAADFDARFSAIRR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI+S PL++ E RAW V + LD AM EA + L+G HDF++FR++ CQA SP+
Sbjct: 112 HYLYRIISRRSPLAL-EARRAWWVPKALDHDAMHEAAQRLLGHHDFTTFRSANCQATSPM 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTLD L V+ G + E+ A
Sbjct: 171 RTLDRLDVTRT------------------------------GDLI----------EIRAS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+SFL++Q+R G LK VG + T +++ L+A+ A P+AP GL V Y
Sbjct: 191 AQSFLHNQIRSFAGSLKLVGESKWTPDNLQAALEARDRKACGPVAPPDGLYFMRVDY 247
>gi|99082224|ref|YP_614378.1| tRNA pseudouridine synthase A [Ruegeria sp. TM1040]
gi|122984147|sp|Q1GE00.1|TRUA_SILST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|99038504|gb|ABF65116.1| Pseudouridylate synthase [Ruegeria sp. TM1040]
Length = 259
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 146/301 (48%), Gaps = 49/301 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G F+G Q+Q + +V G +E A + +I+ + RTD GVH
Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEAALARIEPGEHTIAAAGRTDTGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+E+ D + A+N+ L+ + + D V ++HARF A E
Sbjct: 61 VAHCDLEKNW-----------DPFRLSEALNYHLKP-APVAIVDAALVDDEWHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + ++ + W + +LD+ AMQ +L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRILMRRAP-ATHDEGQVWQIKHDLDVAAMQAGANMLLGNHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL V V G+ + V
Sbjct: 168 VKTLDELRVERVQ----------------------------------GLSGPEVHFHV-- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VGTG + DV+ L+AK A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGTGAWSPEDVKHALEAKDRAACGPVCPGHGLYLARVGYPD 251
Query: 357 P 357
P
Sbjct: 252 P 252
>gi|348551560|ref|XP_003461598.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Cavia
porcellus]
Length = 476
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 162/307 (52%), Gaps = 44/307 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G+ + VGV LEEA + +P+ +LSSRTDAGVHA
Sbjct: 185 RYLVYFQYVGTNFNGAAAVRGAQRAVGVQNYLEEAAEQLNSVKPIRFTLSSRTDAGVHAL 244
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN HVD++R R PP ++ +A+N L+ I V VPSDFHAR+ A
Sbjct: 245 SNAAHVDIQRSQGR------PPFSPEILAQALNTHLRHPA-IRVLQAFRVPSDFHARYAA 297
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+++G L VFE++ W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 298 TSRTYLYRLVTGCTCQNHLPVFERNLCWALPADCLDVAAMQEAAQHLLGTHDFSAFQSAG 357
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
S +RTL + VS +++ ++Q+S ++ +
Sbjct: 358 SPTPSSVRTLRHISVSPGLASPFV--LSQES-------------------------RRLQ 390
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG L V+ IL+++ + +APA GL
Sbjct: 391 FWTLEFESQSFLYRQVRRMTAVLVAVGLRALKPVHVKEILESRDPLGKYQARVAPARGLF 450
Query: 349 LGFVKYD 355
L V Y
Sbjct: 451 LKSVIYG 457
>gi|58617163|ref|YP_196362.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Gardel]
gi|62901148|sp|Q5FGS1.1|TRUA_EHRRG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|58416775|emb|CAI27888.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Gardel]
Length = 246
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 148/299 (49%), Gaps = 56/299 (18%)
Query: 58 QRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
RY I +EY G+ F G QKQ N ++ +LE+A KF Q V++ + RTDAGVHA
Sbjct: 1 MRYKIVIEYDGSNFIGWQKQNHNSNSIQEILEKAIFKFSKQHVTVYGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ ++ +VR A+N+ L S I V V +DFHARF A+
Sbjct: 61 VAHFDLT-----------TDFETYIVRNAINYHLISHA-IAVVHVEKTDTDFHARFSAKR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y+I++ PL++ +++RAW V L++ M +A + G H+FSSFRA CQ+ SP
Sbjct: 109 RYYLYKIVNRYSPLTI-DRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++T+D L SI + P + ++
Sbjct: 168 VKTVDNL------------SITYNHPYI----------------------------DINI 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A SFL+HQVR+IVG L G G ++ I++A + A AP+ GL FVK D
Sbjct: 188 SAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLY--FVKVD 244
>gi|254487927|ref|ZP_05101132.1| tRNA pseudouridine synthase A [Roseobacter sp. GAI101]
gi|214044796|gb|EEB85434.1| tRNA pseudouridine synthase A [Roseobacter sp. GAI101]
Length = 256
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 145/298 (48%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G + G Q+Q+ TV GV+E+A K + I+ + RTD GVHA
Sbjct: 1 MYRYALKIEYNGAPYVGWQRQIGLATVQGVIEDALAKVEPRAHKIAAAGRTDGGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ER D + A+N F + V D V +FHARF AQE
Sbjct: 61 VAHCDMER-----------DWDPFRLSEALN-FHMKPNPVAVVDCAPVGPEFHARFSAQE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + + W V + LDL AM+ + L+G HDF++FR++ CQA +P
Sbjct: 109 RRYQFRILVRRAP-ATHQAGLVWQVKKPLDLDAMRAGARHLIGQHDFTTFRSTICQAATP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++T+D + +S V + GG V +
Sbjct: 168 VKTVDRIDISAVETL--------------------------GGLEV----------HLDV 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR VG L+ VG G LT DV+ + A+ A P++P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSLTPDDVKVMRDARDRQACGPVSPPHGLYLAHVDY 249
>gi|384922033|ref|ZP_10021987.1| tRNA pseudouridine synthase A [Citreicella sp. 357]
gi|384464115|gb|EIE48706.1| tRNA pseudouridine synthase A [Citreicella sp. 357]
Length = 281
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 153/303 (50%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G FSG Q+Q + +V V+E A + + +I+ + RTDAGVH
Sbjct: 27 MPRYALLVEYDGGPFSGWQRQTDHPSVQAVIERALARLEPRAHTIAAAGRTDAGVHGRGQ 86
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+++ + +P S A+NH L+ + + + D VP D+HARF A E
Sbjct: 87 VAHCDMDK-------DWMPFRLSE----ALNHHLRPD-PVAIRDCVRVPDDWHARFSAIE 134
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YR+L P ++ E + W V LD+ AM++ LVG HDF++FR++ CQA SP
Sbjct: 135 RRYLYRVLVRRAPCTL-EAGQVWRVKTPLDIDAMRQGAASLVGAHDFTTFRSTMCQARSP 193
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++T+DE+ + +VS A G F +
Sbjct: 194 VKTMDEIRIESLVSHA-------------------------GPEVRFHL----------- 217
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR IVG L+ VG G DV R L A+ A P+ P GL L V Y
Sbjct: 218 RARSFLHNQVRSIVGTLERVGAGAWAPDDVARALAARNRAACGPVCPPDGLYLMGVGY-- 275
Query: 357 PED 359
PED
Sbjct: 276 PED 278
>gi|301788920|ref|XP_002929883.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase-like
1-like [Ailuropoda melanoleuca]
Length = 290
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 157/306 (51%), Gaps = 45/306 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVG---VLEEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + V LEEA + PV ++SSRTDAGVHA
Sbjct: 11 RYLVYFQYLGTDFNGVAAVRGSQRAVAXQNYLEEAAKRLNSVVPVKFTISSRTDAGVHAL 70
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
N H+DV+R S + PP V+ A+N L+ ++ R VPSDFHAR A
Sbjct: 71 CNAAHLDVQRRSGQ------PPFSPEVLAEALNAHLRHPAIRILQAFR-VPSDFHARHAA 123
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+++G P+ LSVFE++R W + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 124 TSRTYLYRLVTGCHRPDQLSVFERNRCWPLRAGCLDVDAMQEAAQHLLGTHDFSAFQSAG 183
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
A S +RTL VS D S +P + R
Sbjct: 184 SPAASSVRTLRRASVSP--------------------DPGSPFVLPQ--------ENRLR 215
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA--ASPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 216 FWNLEFESQSFLYRQVRRMTAVLVAVGLGALMPAQVKVILESRDPLGRHQARVAPAHGLF 275
Query: 349 LGFVKY 354
L V Y
Sbjct: 276 LKSVLY 281
>gi|449268482|gb|EMC79346.1| tRNA pseudouridine synthase-like 1 [Columba livia]
Length = 284
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/312 (35%), Positives = 160/312 (51%), Gaps = 53/312 (16%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYL+ +Y GT++SG + N ++VVGV LE+A P+ +SSRTD GVHA
Sbjct: 7 RYLVFFQYFGTKYSGVMETSNDQSVVGVQNYLEKAAQNLRPVVPIKFHISSRTDTGVHAL 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
N H+D++ R PG+ P + + +NH L+ E I + + V S FHARF A
Sbjct: 67 CNAAHLDIQ----RAPGK--PIFNEKQLVLGLNHHLKPE-PIRILNAYRVASSFHARFSA 119
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVT-EELDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+L G + VFE++ W L++ AMQ+A + L+G HDFS+FR+
Sbjct: 120 LSRTYVYRLLMGCRHHSEIPVFERNLCWAPPGGPLNVPAMQDAAQFLLGTHDFSTFRSQN 179
Query: 231 CQA--NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
+ SPIRT+ ++ + P+ G + +
Sbjct: 180 SETPLQSPIRTISQVDIQ-----------------------------PSAG--LLSHHYE 208
Query: 289 HRS---YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA--ASPMAP 343
HR +E+ R+RSFLY QVR +VG L AVG G LT ++ +L+ K A A+ MAP
Sbjct: 209 HRGLEFWELKFRSRSFLYRQVRRMVGALVAVGQGRLTPRHIKELLEIKDSRAFPANAMAP 268
Query: 344 ACGLSLGFVKYD 355
GL L V+YD
Sbjct: 269 PSGLFLKSVEYD 280
>gi|254463862|ref|ZP_05077273.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium Y4I]
gi|206684770|gb|EDZ45252.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium Y4I]
Length = 255
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 147/303 (48%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G F+G Q+Q + +V G +E A + +I+ + RTD GVHA
Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDLPSVQGAIEAALARLEPGEHTIAAAGRTDTGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + D + A+N+ L+ + +V R V D+HARF A E
Sbjct: 61 VAHCDMAK-----------DWDPFRLSEALNYHLKPDPVAIVGCAR-VDDDWHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + + + W ++ ELD AMQEA L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRILIRRAP-ATHDAGQVWQLSHELDADAMQEAANYLIGNHDFTTFRSSICQAQSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL V V G + V
Sbjct: 168 VKTLDELTVERVQ----------------------------------GFSGPEIHFHV-- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G +DV+ L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWDPADVKAALEARDRAACGPVCPGHGLYLARVGY-- 249
Query: 357 PED 359
PED
Sbjct: 250 PED 252
>gi|395841018|ref|XP_003793346.1| PREDICTED: tRNA pseudouridine synthase-like 1 [Otolemur garnettii]
Length = 302
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 160/306 (52%), Gaps = 44/306 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVL---EEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGVL EEA + PV ++SSRTDAGVHA
Sbjct: 13 RYLVYFQYLGTDFNGVAAVRGAQRAVGVLNYLEEAAERLNSVVPVKFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
N H+D++R S R PP V+ +A+N L+ I V VPSDFHAR+ A
Sbjct: 73 CNTAHLDIQRRSGR------PPFPPEVLAQALNTHLKHPA-IRVLQAFRVPSDFHARYAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G E L VFE+ W + + LD+ AM+EA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLATGCLQSEQLPVFERSLCWALRPDYLDVDAMREAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
A S +RTL + V S+ SP + ++ ++ R
Sbjct: 186 SPATSSVRTLHRVSV----------SLGPASPYVLPQES-----------------RRLR 218
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 219 FWNLEFESQSFLYRQVRRMTAVLVAVGLGVLLPAQVKMILESRDPLGKHQAHVAPAHGLF 278
Query: 349 LGFVKY 354
L V Y
Sbjct: 279 LKSVLY 284
>gi|310816231|ref|YP_003964195.1| tRNA pseudouridine synthase A [Ketogulonicigenium vulgare Y25]
gi|385233735|ref|YP_005795077.1| tRNA pseudouridine synthase A [Ketogulonicigenium vulgare WSH-001]
gi|308754966|gb|ADO42895.1| tRNA pseudouridine synthase A [Ketogulonicigenium vulgare Y25]
gi|343462646|gb|AEM41081.1| tRNA pseudouridine synthase A [Ketogulonicigenium vulgare WSH-001]
Length = 255
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 142/300 (47%), Gaps = 49/300 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G FSG Q+Q +V G +E A K + +I+ + RTD GVH
Sbjct: 1 MPRYALLVEYDGRPFSGWQRQSELPSVQGAIEAALAKLEPRDHTIAAAGRTDTGVHGTGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+++ D + A+NH L+ ++ R V D+HARF A E
Sbjct: 61 VAHCDMDK-----------DWDPFRLSEALNHHLRPAPVAILRAAR-VADDWHARFSAYE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+LS PL+V E + W V LD M+ L+G HDF++FR+S CQA SP
Sbjct: 109 RRYIFRLLSRRAPLTV-ENGQFWRVGHALDADLMRAGAAHLIGLHDFTTFRSSICQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++T+DE+ ++E+ R +
Sbjct: 168 VKTIDEISITEIP------------------------------------RHDGTEFRFFL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR IVG L+ VG G V +L A+ A P+ P GL L V+Y +
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGAWPPEKVAEVLAARDRAACGPVCPPQGLYLAGVEYPI 251
>gi|126462985|ref|YP_001044099.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17029]
gi|166228755|sp|A3PLW1.1|TRUA_RHOS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|126104649|gb|ABN77327.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17029]
Length = 255
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 143/298 (47%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q +V G +E A + P +I+ + RTD GVHA
Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R D + A+N L+ +V R VP +FHARF A E
Sbjct: 61 VAHCDLVR-----------EWDPFRLAGALNAHLKPLPVAIVAAAR-VPEEFHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L+ P V ++ R W V LD AM+ LVG HDF++FRA+GCQA SP
Sbjct: 109 RRYLFRLLARRAP-EVHDRGRVWRVPHPLDPEAMRAGAAHLVGRHDFTTFRAAGCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L L +++ GM NG Y
Sbjct: 168 VKTLDAL-------------------TLETVE-----GM-NG-----------TEYRFHL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR IVG L+ VG G T V L+A A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGAWTPDQVREALEAHDRAACGPVCPPQGLYLTGVGY 249
>gi|68171651|ref|ZP_00545015.1| tRNA pseudouridine synthase [Ehrlichia chaffeensis str. Sapulpa]
gi|88658037|ref|YP_507432.1| tRNA pseudouridine synthase A [Ehrlichia chaffeensis str. Arkansas]
gi|123750061|sp|Q2GGK1.1|TRUA_EHRCR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|67998925|gb|EAM85612.1| tRNA pseudouridine synthase [Ehrlichia chaffeensis str. Sapulpa]
gi|88599494|gb|ABD44963.1| tRNA pseudouridine synthase A [Ehrlichia chaffeensis str. Arkansas]
Length = 245
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 147/298 (49%), Gaps = 56/298 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I +EY G+ F G QKQ + ++ +LE A KF Q ++ ++ RTDAGVHA V
Sbjct: 2 RYKITIEYNGSNFIGWQKQKHSSNSIQEILENAILKFSQQHTTVYVAGRTDAGVHALGQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ D+ VVR A+N+ L I + V FHARF A++R
Sbjct: 62 AHFDLT-----------TNLDTYVVRNAINYHLIPHA-IAILSVEKTDDKFHARFSAKKR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y+I++ PL++ + +RAW + L++ M +A + + G HDFSSFRA CQ+ +PI
Sbjct: 110 HYLYKIINRYSPLTI-DYNRAWLIHNPLNIENMIQAIEYIKGNHDFSSFRARHCQSKNPI 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+T+D+L + I N+ + + H S
Sbjct: 169 KTIDDLKI---------------------IHNNQSINI-------------HIS------ 188
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A SFL+HQVR+IVG L G + ++ ILKAK + A AP GL FVK D
Sbjct: 189 AISFLHHQVRIIVGTLVECGKNNFSPEHIKNILKAKNRSYAGMTAPPYGLY--FVKVD 244
>gi|149203831|ref|ZP_01880800.1| tRNA pseudouridine synthase A [Roseovarius sp. TM1035]
gi|149142948|gb|EDM30990.1| tRNA pseudouridine synthase A [Roseovarius sp. TM1035]
Length = 258
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 152/303 (50%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q++ +V G +E A + +I+ + RTDAGVHA +
Sbjct: 1 MPRYALRIEYDGAPFAGWQRQVDHPSVQGAVEAALARIEPGSHTIAAAGRTDAGVHAIAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R + + A+N+ L+ + VR V D+HARF A E
Sbjct: 61 VAHCDLTR-----------EWGTFRLSEALNYHLKPLPVAITACVR-VAEDWHARFSANE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R++S P+++ ++ R WHV +LD+ AM+ + L+G HDF++FR++ CQA SP
Sbjct: 109 RRYLFRVMSRRAPVTL-DRGRVWHVRPKLDIDAMRAGAQHLIGMHDFTTFRSTICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TLD + +SE + S +G
Sbjct: 168 IKTLDAIEISE---------------------HESAMGP---------------EIHFRL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR IVG L+ VG G +V L A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGSWHPDEVRAALNARDRAACGPVCPPHGLYLAGVSY-- 249
Query: 357 PED 359
P+D
Sbjct: 250 PQD 252
>gi|302390990|ref|YP_003826810.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501]
gi|302203067|gb|ADL11745.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501]
Length = 244
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 149/297 (50%), Gaps = 55/297 (18%)
Query: 59 RYLIAV-EYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RYL A+ Y GT + G Q Q + T+ LEE+ + + ++ RTD GVHA + V
Sbjct: 2 RYLKAIIAYDGTNYYGFQHQPDVPTIQDELEESLRILTKEKNKVIVAGRTDRGVHAQNQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
+ E P +R A N+ L + DI++ +V V +DFHAR+ A+ +
Sbjct: 62 INFKTE-----------SPIPLENIRFAWNNCLPN--DILIKEVEDVNADFHARYDAEGK 108
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRIL+ P P SVF+++ +H+ EELD AM EA + L+G +DFSSF+ASG + +
Sbjct: 109 IYEYRILNQPLP-SVFKRNYTYHIKEELDSAAMAEAAECLIGTYDFSSFQASGSNVQTTV 167
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + V++ QD V+ I+
Sbjct: 168 RTIQQAEVTQ-----------QDRLVIFRIEGD--------------------------- 189
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+IVG L VGTGE V + RI++A+ AA P APA GL L VKY
Sbjct: 190 --GFLYNMVRIIVGTLIKVGTGEWEVPRMSRIIEAEDRLAAGPTAPAQGLRLIKVKY 244
>gi|118589718|ref|ZP_01547123.1| tRNA pseudouridine synthase A [Stappia aggregata IAM 12614]
gi|118437804|gb|EAV44440.1| tRNA pseudouridine synthase A [Labrenzia aggregata IAM 12614]
Length = 266
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 147/307 (47%), Gaps = 59/307 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G FSG Q+Q N +V V+E A F G+ V+I + RTD GVHA
Sbjct: 1 MPRYKLTVEYDGRPFSGWQRQANAPSVQAVIERAAKAFSGEEVTIGGAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
VCHVD+ + D+ V A+N Q + +++ D + F ARF A
Sbjct: 61 VCHVDLSK-----------DWDARTVMGALNFHCQPD-PVVILDAAEMHEGFDARFSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRI + PL+ + AWHV LD AM A + VG HDF++FR + CQA SP
Sbjct: 109 RSYRYRIHNRLPPLT-HQLGLAWHVKVHLDADAMHAAAQEFVGHHDFTTFRHTRCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE-VI 295
+TL+E V +R E VI
Sbjct: 168 EKTLEEFRV-------------------------------------------YRDGEFVI 184
Query: 296 AR--ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A +RSFL++QVR +VG L+ VG G+ D+ + L A+ A P+APA GL L V
Sbjct: 185 AECASRSFLHNQVRSMVGSLRLVGEGKWGPGDITKALAARDRNACGPVAPADGLYLTRVD 244
Query: 354 YDLPEDD 360
Y E+D
Sbjct: 245 YRTAEED 251
>gi|304392304|ref|ZP_07374245.1| tRNA pseudouridine synthase A [Ahrensia sp. R2A130]
gi|303295408|gb|EFL89767.1| tRNA pseudouridine synthase A [Ahrensia sp. R2A130]
Length = 251
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 150/301 (49%), Gaps = 53/301 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSI-SLSSRTDAGVHAAS 115
+ RY +EY G ++G Q+Q + +V G +E A + +G+P I + RTDAGVHA +
Sbjct: 1 MGRYRFIIEYDGKPYAGWQRQPDQPSVQGAIEAALGR-LGEPDPIVQGAGRTDAGVHALA 59
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSD--FHARFR 173
V H D+ R P + A+N L+ GD V + C P D FHARF
Sbjct: 60 QVAHSDLTR-----------PWTGFRLAEALNAHLRKAGD-PVAIIDCEPCDDEFHARFS 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A +R Y YRI+ PL+V + RAW+V LD+ AM +A LVG HDF++FR++ CQA
Sbjct: 108 ATQRAYLYRIIDHRAPLAV-DAGRAWNVKTPLDVDAMNKAAARLVGEHDFTTFRSTECQA 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++TL L + V +G S V E
Sbjct: 167 RSPVKTLGTLVATRV--------------------------QRHGRSEV----------E 190
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ ARS+L++QVR + G L+ VG G+ + D L A TA +P+APA GL L V
Sbjct: 191 ITTTARSYLHNQVRSLAGCLRLVGCGKWSPDDAAASLAAMDRTACAPVAPAHGLYLTSVT 250
Query: 354 Y 354
Y
Sbjct: 251 Y 251
>gi|259417872|ref|ZP_05741791.1| tRNA pseudouridine synthase A [Silicibacter sp. TrichCH4B]
gi|259346778|gb|EEW58592.1| tRNA pseudouridine synthase A [Silicibacter sp. TrichCH4B]
Length = 278
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 142/301 (47%), Gaps = 49/301 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + VEY G F+G Q+Q + +V G +E A K +I+ + RTD GVH
Sbjct: 20 MPRIALKVEYHGKPFAGWQRQKDQPSVQGAIEAALAKLEPGEHTIAAAGRTDTGVHGLGQ 79
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+++ D + A+N+ L+ + I + D V D+HARF A E
Sbjct: 80 VAHCDLQK-----------DWDPFRLSEALNYHLKPD-PIAIVDAARVDDDWHARFSAIE 127
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + + + W + LD+ AMQ +L+G HDF++FR+S CQA SP
Sbjct: 128 RQYLFRILMRRAP-ATHDAGQVWQINHRLDVEAMQAGADMLLGNHDFTTFRSSICQAASP 186
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL V +V G+ + V
Sbjct: 187 VKTLDELRVEQVQ----------------------------------GLSGPEVHFHV-- 210
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G T DV L AK A P+ P GL L V Y
Sbjct: 211 RARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALAAKDRAACGPVCPGHGLYLARVGYPD 270
Query: 357 P 357
P
Sbjct: 271 P 271
>gi|163851061|ref|YP_001639104.1| tRNA pseudouridine synthase A [Methylobacterium extorquens PA1]
gi|238687375|sp|A9W377.1|TRUA_METEP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|163662666|gb|ABY30033.1| tRNA pseudouridine synthase A [Methylobacterium extorquens PA1]
Length = 250
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 142/302 (47%), Gaps = 53/302 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q+Q + TV +E A +F G+ ++ + RTDAGVHA
Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + + VR A+N L+ + + + VP +F AR A
Sbjct: 61 VAHLDLAKDWR-----------TDTVRDALNARLRPQ-PVAILSAEVVPQEFDARHSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + + W V LD M A + L+G HDFS+FRA+ CQA SP
Sbjct: 109 RHYRYRILNRRSP-AALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTL++L V+ V LF I VIA
Sbjct: 168 MRTLEQLDVTR-VRMGLFEEI------------------------------------VIA 190
Query: 297 -RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR + G L G L+ DV IL P+APACGL+ FV D
Sbjct: 191 TSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPACGLT--FVGVD 248
Query: 356 LP 357
P
Sbjct: 249 YP 250
>gi|254560755|ref|YP_003067850.1| tRNA pseudouridine synthase A [Methylobacterium extorquens DM4]
gi|254268033|emb|CAX23904.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Methylobacterium extorquens
DM4]
Length = 250
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 140/299 (46%), Gaps = 51/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q+Q + TV +E A +F G+ ++ + RTDAGVHA
Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + + VR A+N L+ + + + VP +F AR A
Sbjct: 61 VAHLDLAKDWR-----------TDTVRDALNAHLRPQ-PVAILSAEVVPQEFDARHSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + + W V LD M A + L+G HDFS+FRA+ CQA SP
Sbjct: 109 RHYRYRILNRRSP-AALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTL++L V+ V LF I VIA
Sbjct: 168 MRTLEQLDVTR-VRMGLFEEI------------------------------------VIA 190
Query: 297 -RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR + G L G L+ DV IL P+APACGL+ V Y
Sbjct: 191 TSARSFLHHQVRAMAGTLMLAGCNRLSADDVAEILATGAKHRCGPLAPACGLTFVGVDY 249
>gi|254501121|ref|ZP_05113272.1| tRNA pseudouridine synthase A [Labrenzia alexandrii DFL-11]
gi|222437192|gb|EEE43871.1| tRNA pseudouridine synthase A [Labrenzia alexandrii DFL-11]
Length = 272
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 143/298 (47%), Gaps = 57/298 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY G FSG Q+Q N +V V+E A F G+ V+I + RTD GVHA VC
Sbjct: 3 RYKLTVEYDGRPFSGWQRQANAPSVQAVIERAIKAFSGEEVTIGGAGRTDTGVHATGQVC 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D +SK+ P + V A+N Q + +++ D + F ARF A R
Sbjct: 63 HAD---LSKQWP--------TKTVMGALNFHCQPD-PVVILDCEEMHEGFDARFSAIRRA 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI + +PL+ + AWHV ELD AM +A + VG HDF++FR S CQA SP +
Sbjct: 111 YRYRIHNRLQPLT-HQLGLAWHVKHELDADAMHQAAQEFVGHHDFTTFRHSRCQAKSPEK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR- 297
TL+ S+ +D VIA
Sbjct: 170 TLEHF------------SVYRDGDF------------------------------VIAEC 187
Query: 298 -ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+RSFL++QVR +VG L+ VG D+ LKA+ A P+APA GL L V Y
Sbjct: 188 SSRSFLHNQVRSMVGTLRLVGEDRWGPGDITNALKARDRKACGPVAPADGLYLTRVDY 245
>gi|149912589|ref|ZP_01901123.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b]
gi|149916040|ref|ZP_01904563.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b]
gi|149810114|gb|EDM69962.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b]
gi|149812995|gb|EDM72821.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b]
Length = 255
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 149/303 (49%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q +V G +E A + P I+ + RTDAGVH +
Sbjct: 1 MPRYALKVEYDGAPFAGWQRQAEQPSVQGAIEAALARLEPGPHKIAAAGRTDAGVHGLAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + +P +++ AVN+ L+ +V + D+HARF A E
Sbjct: 61 VAHCDL--VKDWEPFKLM---------GAVNYHLKPAPVAVVACAQVA-EDWHARFSALE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L P E R W V + LD+ AM+E + L+G HDF++FR+S CQA SP
Sbjct: 109 RRYLFRLLMR-RPPETLEAGRVWRVPQSLDVAAMREGARHLLGKHDFTTFRSSICQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L + E + LG P + H S
Sbjct: 168 VKTLDALEIEE----------------------AEGLGGPE--------LRFHLS----- 192
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL++QVR IVG L+ VG G DV+ L+AK A P+ P GL L V Y
Sbjct: 193 -ARSFLHNQVRSIVGTLERVGAGSWAPEDVKTALEAKDRAACGPVCPPQGLYLAGVGY-- 249
Query: 357 PED 359
P+D
Sbjct: 250 PQD 252
>gi|57239154|ref|YP_180290.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str.
Welgevonden]
gi|58579105|ref|YP_197317.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str.
Welgevonden]
gi|62901163|sp|Q5HBA4.1|TRUA_EHRRW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|57161233|emb|CAH58149.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str.
Welgevonden]
gi|58417731|emb|CAI26935.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str.
Welgevonden]
Length = 246
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 147/299 (49%), Gaps = 56/299 (18%)
Query: 58 QRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
RY I +EY G+ F G QKQ N ++ +LE+A KF Q V + + RTDAGVHA
Sbjct: 1 MRYKIVIEYDGSDFIGWQKQNHNSNSIQEILEKAIFKFSKQHVIVYGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ ++ +VR A+N+ L S I V V +DFHARF A+
Sbjct: 61 VAHFDLT-----------TDFETYIVRNAINYHLISHA-IAVVHVEKTDTDFHARFSAKR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y+I++ PL++ +++RAW V L++ M +A + G H+FSSFRA CQ+ SP
Sbjct: 109 RYYLYKIVNRYSPLTI-DRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+T+D L SI + P + ++
Sbjct: 168 IKTVDNL------------SITYNHPYI----------------------------DINI 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A SFL+HQVR+IVG L G G ++ I++A + A AP+ GL FVK D
Sbjct: 188 SAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLY--FVKVD 244
>gi|58040265|ref|YP_192229.1| tRNA pseudouridine synthase A [Gluconobacter oxydans 621H]
gi|62901153|sp|Q5FPX3.1|TRUA_GLUOX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|58002679|gb|AAW61573.1| tRNA pseudouridine synthase A [Gluconobacter oxydans 621H]
Length = 275
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 152/307 (49%), Gaps = 60/307 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ R+ + +EY GT + G QKQ + ++ G++E A K + +PV + RTDAGVHAA
Sbjct: 20 LNRWALRIEYDGTGYLGWQKQNDGTSIQGLIEAAASKLVRNRPVPSITAGRTDAGVHAAG 79
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P + P D+ +R + + L+ ++V + V +++ARF A
Sbjct: 80 MVIHLDF-------PDDA--PIDARQIRDGMGYHLKPH-RVVVLETAKVGPEWNARFSAT 129
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R+Y Y IL+ P + E +R WH+ LD+ MQ+A L+G HDF+SFRA CQA S
Sbjct: 130 WRSYRYTILNRPARPGLME-NRVWHIKRPLDVDLMQQAANHLLGPHDFTSFRAVACQARS 188
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIRTLD L++ HR E++
Sbjct: 189 PIRTLDVLNI-------------------------------------------HRDGELV 205
Query: 296 ---ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
+ARSFL+HQVR + G L +G+ + V + IL+AK AA AP GL L V
Sbjct: 206 MIDTKARSFLHHQVRNMAGTLMMIGSRQWPVEKIIEILEAKDRCAAGQTAPPEGLCLMDV 265
Query: 353 KYDLPED 359
Y P+D
Sbjct: 266 GY--PDD 270
>gi|378824656|ref|YP_005187388.1| tRNA pseudouridine synthase A [Sinorhizobium fredii HH103]
gi|365177708|emb|CCE94563.1| tRNA pseudouridine synthase A [Sinorhizobium fredii HH103]
Length = 247
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 149/299 (49%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G + G Q+Q N +V G +E+A G+ VSI + RTD+GVHA
Sbjct: 1 MPRYRLTVEYDGFDYVGWQRQENGPSVQGAIEKAVLSLTGETVSIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H+D+ R K + +R A+N L + + + D VP +F ARF A
Sbjct: 61 VAHLDLTRQWK-----------THTLRNALNAHLALAAERVSILDAAEVPPEFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E RAW V + LD AM A + LVG HDF++FR++ CQANS
Sbjct: 110 RRHYLYRIISRRSPLAL-EARRAWWVPKTLDHEAMHAAAQHLVGHHDFTTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RT+D L V+ S +L E+
Sbjct: 169 PLRTIDRLDVT----------------------RSGEL------------------IEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A A+SFL++Q+R G LK VG G+ D++ L+A+ A P+AP GL V Y
Sbjct: 189 ATAQSFLHNQIRSFAGSLKLVGEGKWAPDDLKAALEARDRKACGPVAPPEGLFFMQVDY 247
>gi|414165108|ref|ZP_11421355.1| tRNA pseudouridine synthase A [Afipia felis ATCC 53690]
gi|410882888|gb|EKS30728.1| tRNA pseudouridine synthase A [Afipia felis ATCC 53690]
Length = 245
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 141/296 (47%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY GT F G Q Q N +V G LE+A G V + + RTDAGVHA V
Sbjct: 3 RYKLIIEYDGTPFCGWQYQDNGPSVQGALEDAVMAMTGSRVRVHGAGRTDAGVHALGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H+D+E+ + + VR A+N L+ I V VP F ARF A +R
Sbjct: 63 HIDLEKTYR-----------ADRVRDALNAHLRPH-PIGVLSAEIVPETFEARFSAMKRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI + L+ + AW V LD+ AMQEA +VL+G HDF++FR + CQA S +
Sbjct: 111 YIYRISNRRANLA-LDVGHAWRVARLLDVVAMQEAAQVLIGKHDFTTFRDTECQAKSAEK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD+L V ++ + ++ A
Sbjct: 170 TLDQLDVV----------------------------------------REGDAVNIVTSA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+ QVR +VG L VG G T +D+ + L A+ A P+AP GL L V Y
Sbjct: 190 RSFLHSQVRSMVGSLVWVGHGRWTAADMRKALDARDRAACGPVAPPDGLYLVRVDY 245
>gi|262277956|ref|ZP_06055749.1| tRNA pseudouridine synthase A [alpha proteobacterium HIMB114]
gi|262225059|gb|EEY75518.1| tRNA pseudouridine synthase A [alpha proteobacterium HIMB114]
Length = 245
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 146/298 (48%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY VEY GT F G Q Q + TV ++E++F + I S RTD+GVHA
Sbjct: 1 MHRYKAVVEYNGTDFEGWQSQPSGNTVQQIIEKSFLEIQLNKTKIFGSGRTDSGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D E D + +NHFL+ + +I V + ++F +R A+
Sbjct: 61 VFHFDYE-----------DKLDCKKILLGLNHFLKKK-NISVLSLDFTNNNFDSRRDAKL 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y+IL+ + E ++ WHV + LD + MQ+A ++ +G HDF++FRAS C+A SP
Sbjct: 109 RTYTYKILNRIASPVILE-NQVWHVIKNLDFKLMQKASQIFLGSHDFTTFRASSCEATSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IR E++ + L +K + I
Sbjct: 168 IR--------EIIYSEL--------------------------------KKNNDQIIYIV 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
++RSFL HQVR +VG +K VG + ++ D++ LK+K + APACGL L V+Y
Sbjct: 188 KSRSFLQHQVRSMVGAIKFVGEKKWSLKDLDEALKSKNRNNCATPAPACGLYLENVEY 245
>gi|398349956|ref|YP_006395420.1| tRNA pseudouridine synthase A [Sinorhizobium fredii USDA 257]
gi|390125282|gb|AFL48663.1| tRNA pseudouridine synthase A [Sinorhizobium fredii USDA 257]
Length = 247
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 149/299 (49%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G+ + G Q+Q N +V G +E+A G+ VSI + RTD+GVHA
Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQENGPSVQGAIEKAVLSLTGETVSIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H+D+ R S +R A+N L + + + D P +F ARF A+
Sbjct: 61 VAHLDLTR-----------EWASHTLRNALNAHLALAAERVSILDAAEAPPEFDARFSAR 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E RAW V + LD AM A + LVG HDF++FR++ CQA S
Sbjct: 110 RRHYLYRIISRRSPLAL-EARRAWWVPKTLDHEAMHTAAQHLVGHHDFTTFRSAHCQATS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RT+D L V+ S +L E+
Sbjct: 169 PLRTIDRLDVT----------------------RSGEL------------------IEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A A+SFL++Q+R G LK VG G+ T D++ L+A+ A P+AP GL V Y
Sbjct: 189 ATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLKAALEARDRKACGPVAPPEGLYFMQVDY 247
>gi|341614794|ref|ZP_08701663.1| tRNA pseudouridine synthase A [Citromicrobium sp. JLT1363]
Length = 254
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 145/303 (47%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +E+ GT F G Q+Q + +V +EEA H G+ V++ + RTD GVHA +
Sbjct: 3 LTRYALTLEFDGTPFFGLQRQKDGPSVQQAVEEAVHGVTGEEVTLHSAGRTDTGVHALAM 62
Query: 117 VCHVDVE-RISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
H DVE +++ + GE A+N L+ I VT VP D+HARF
Sbjct: 63 RSHFDVESKLTPFRMGE------------AINAHLRP-APIAVTHCEAVPEDWHARFSCI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRIL+ PL++ EK+RAW ++ E D AM A + LVG HDF++FR+ CQA S
Sbjct: 110 GRRYLYRILNRRAPLTL-EKNRAWLLSPECDAEAMHRAAQSLVGHHDFTTFRSVHCQAAS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P++TLD L I++ +
Sbjct: 169 PVKTLDRL----------------------------------------DIKRSGDEIRIE 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG L VG G + ++L+AK APA GL Y
Sbjct: 189 VAARSFLHHQVRSMVGCLALVGMGRWNEDRIAQVLEAKDRQELGLNAPAHGLYFVEAIYP 248
Query: 356 LPE 358
PE
Sbjct: 249 EPE 251
>gi|254475915|ref|ZP_05089301.1| tRNA pseudouridine synthase A [Ruegeria sp. R11]
gi|214030158|gb|EEB70993.1| tRNA pseudouridine synthase A [Ruegeria sp. R11]
Length = 256
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 146/303 (48%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G F+G Q+Q + +V G +E+A + P +I+ + RTD GVH
Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIEDALARLEPGPHTIAAAGRTDTGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + D + A+N+ L+ + + D V D+HARF A E
Sbjct: 61 VAHCDMAKAW-----------DPFRLSEALNYHLKP-APVAIVDCAQVDDDWHARFSAIE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + + + W ++ +LD+ AMQEA LVG HDF++FR+S CQA SP
Sbjct: 109 RQYLFRILIRRAP-ATHDAGQVWQLSHDLDVAAMQEAADHLVGQHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL V V G + V
Sbjct: 168 LKTLDELRVERVQ----------------------------------GFSGPEIHFHV-- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G DV+ L+A A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWDPVDVKDALEACDRAACGPVCPGHGLYLARVGY-- 249
Query: 357 PED 359
P+D
Sbjct: 250 PQD 252
>gi|221640010|ref|YP_002526272.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides KD131]
gi|254764862|sp|B9KKX4.1|TRUA_RHOSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|221160791|gb|ACM01771.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides KD131]
Length = 255
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 141/298 (47%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q +V G +E A + P +I+ + RTD GVHA
Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLELGPHTIAAAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R D + A+N L+ +V R V +FHARF A E
Sbjct: 61 VAHCDLAR-----------EWDPFRLAGALNAHLKPLPVAIVAAAR-VSEEFHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L+ P V ++ R W V LD AM+ LVG HDF++FRA+GCQA SP
Sbjct: 109 RRYLFRLLARRAP-EVHDRGRVWRVPHPLDAEAMRAGAAHLVGRHDFTTFRAAGCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TLD L L +++ + NG Y
Sbjct: 168 IKTLDAL-------------------TLETVEGA------NG-----------TEYRFHL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR IVG L+ VG G T V L A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPPQGLYLTGVGY 249
>gi|397676365|ref|YP_006517903.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|395397054|gb|AFN56381.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis
ATCC 29191]
Length = 245
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 139/293 (47%), Gaps = 57/293 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VE+ G F G Q+Q + T+ G +EEA GQP + + RTDAGVH +
Sbjct: 1 MNRYRLTVEFDGRNFMGWQRQKHGATIQGSIEEAGASIAGQPTPVQAAGRTDAGVHGLAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVR--RAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
H+DV R D + R A+N L+ I + V ++HARF
Sbjct: 61 TAHIDVAR-------------DFTPFRLMEALNARLKPR-PIAILSCEQVDPEWHARFSC 106
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y YRI++ PL++ E RAWHV + LD AM A K L+G HDF++FR+ CQ+
Sbjct: 107 IGRRYLYRIINRRPPLTL-EAGRAWHVIKPLDAEAMDIAAKRLIGLHDFTTFRSVHCQSK 165
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP++TLD L V + G + E+
Sbjct: 166 SPVKTLDHLDVRRI------------------------------GDQI----------EI 185
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
A ARSFL+HQVR +VG L VG G+ T D+ L+A+ A AP GL
Sbjct: 186 TAAARSFLHHQVRSMVGCLVLVGQGQWTADDMTTALEARNRAALGFNAPPDGL 238
>gi|346991799|ref|ZP_08859871.1| tRNA pseudouridine synthase A [Ruegeria sp. TW15]
Length = 255
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 143/304 (47%), Gaps = 49/304 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q +V G +E A + +I+ + RTDAGVHA
Sbjct: 1 MPRYALKVEYQGEPFAGWQRQKELPSVQGAIEHALSRIEPGEHTIAAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + D + A+N+ L+ + +V R V D+HARF A E
Sbjct: 61 VAHCDLVK-----------DWDPFRLSEALNYHLKPQPVAIVNAAR-VDDDWHARFSALE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + ++ + W + LD+ AMQ +L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRILMRRAP-ATHDRGQVWQINHTLDVAAMQAGADILIGRHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL V V G + V
Sbjct: 168 VKTLDELRVERVQ----------------------------------GFSGPEIHFHV-- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G T DV L A +A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWTPEDVREALVAVDRSACGPVCPPQGLYLARVGYPE 251
Query: 357 PEDD 360
P D
Sbjct: 252 PVFD 255
>gi|357383130|ref|YP_004897854.1| tRNA pseudouridine synthase A [Pelagibacterium halotolerans B2]
gi|351591767|gb|AEQ50104.1| tRNA pseudouridine synthase A [Pelagibacterium halotolerans B2]
Length = 245
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 139/296 (46%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY GT F G Q+Q + +V LE A F G+ V + RTDAGVHA V
Sbjct: 3 RYKLTIEYDGTPFVGWQRQADALSVQEALEIAIEAFSGETVRTQTAGRTDAGVHARGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D++R D V A+N+ L+ I++ DF ARF A+ R
Sbjct: 63 HFDLDR-----------EWDPFRVSEALNYHLKPH-PIVIVHCEMAGEDFEARFSAKARH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y IL+ + D+ WHV LD +AM EA + ++G HDF++FR++ CQANSP+R
Sbjct: 111 YRYLILN-RRARPALDVDKVWHVAVPLDEKAMHEAAQTILGRHDFTTFRSAQCQANSPLR 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD L V +++ + A A
Sbjct: 170 TLDRLDV----------------------------------------KREGDLVTIEASA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
R+FL+HQVR + G LK VG G V+ + L AK + MAP+ GL L + Y
Sbjct: 190 RAFLHHQVRSMTGSLKLVGEGRWPVTGLRAALDAKDRSRCGAMAPSSGLYLMAIDY 245
>gi|254510182|ref|ZP_05122249.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium KLH11]
gi|221533893|gb|EEE36881.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium KLH11]
Length = 255
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 144/301 (47%), Gaps = 49/301 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q +V G +E A + +I+ + RTDAGVHA
Sbjct: 1 MPRYALKVEYHGEPFAGWQRQKEQPSVQGAIEAALSRIEPGDHTIAAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + D + A+N+ L+ + +V R V D+HARF A E
Sbjct: 61 VAHCDLTK-----------DWDPFRLSEALNYHLKPQPVAIVKAAR-VNDDWHARFSALE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + +K + W + LD+ AMQ +L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRILMRRAP-ATHDKGQVWQINHTLDVAAMQAGADMLIGQHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V +V FS G F +
Sbjct: 168 VKTLDALRVEQVQG---FS----------------------GAEIHFHV----------- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G T DV L+A A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALEAADRAACGPVCPPQGLYLARVGYPE 251
Query: 357 P 357
P
Sbjct: 252 P 252
>gi|326671566|ref|XP_683563.5| PREDICTED: tRNA pseudouridine synthase-like 1-like [Danio rerio]
Length = 291
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 112/314 (35%), Positives = 166/314 (52%), Gaps = 56/314 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQPVS---ISLSSRTDAG 110
+ RYLI +Y G+++SG K + V GV LE A K +PV+ +S+SSRTD G
Sbjct: 5 VARYLIFFQYTGSKYSGVMKAPAHQAVQGVGNHLENAVRKL--KPVNEVCVSISSRTDTG 62
Query: 111 VHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHA 170
VHA N HVD++R + + PP + A+N L+ E I +T V SDFHA
Sbjct: 63 VHALCNSAHVDIQRRADK------PPLSEQSLLEALNFQLKEE-PIRITRAYRVHSDFHA 115
Query: 171 RFRAQERTYFYRILSGPE-----PLSVFEKDRAWHVTE-ELDLRAMQEACKVLVGCHDFS 224
R++AQ RTY YR+ G + PL+ EKD W + + L++ AM+EA +L+G HDFS
Sbjct: 116 RYQAQSRTYVYRLALGCQHHTLMPLT--EKDLCWALRDTRLNIDAMREASALLLGTHDFS 173
Query: 225 SFRASGCQA--NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNV 282
+FRA A P++TLD L+ ++ P +
Sbjct: 174 TFRALSSDAPFKCPVKTLD----------------------LAQLE-------PGESFSQ 204
Query: 283 FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA--ASP 340
++ + +E+ ++RSFLY QVR + GVL A+G G L+VS ++ +L+A+ A +
Sbjct: 205 RHFQRDIQFWELTFKSRSFLYRQVRRMTGVLVAIGQGRLSVSKIQDLLEARDSLAFPNNL 264
Query: 341 MAPACGLSLGFVKY 354
APA GL L V+Y
Sbjct: 265 TAPAHGLFLTNVQY 278
>gi|126737019|ref|ZP_01752754.1| tRNA pseudouridine synthase A [Roseobacter sp. SK209-2-6]
gi|126721604|gb|EBA18307.1| tRNA pseudouridine synthase A [Roseobacter sp. SK209-2-6]
Length = 255
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 146/303 (48%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G F+G Q+Q + +V G +E+A + +I+ + RTD GVH
Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDLPSVQGAIEDALSRLEPGAHTIAAAGRTDTGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+++ D + A+N+ L+ + + D V D+HARF A E
Sbjct: 61 VAHCDLQK-----------DWDPFRLSEALNYHLKP-APVAILDCAGVDEDWHARFSAIE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + + + W + ELD+ AMQEA L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRILMRRAP-ATHDAGQVWQINHELDVAAMQEAADHLIGNHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLDEL + V G+ + V
Sbjct: 168 QKTLDELRI----------------------------------ETVQGLSGPEVHFHV-- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G DV+ L+A +A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSWEPLDVKHALEACDRSACGPVCPGHGLYLARVGY-- 249
Query: 357 PED 359
P+D
Sbjct: 250 PDD 252
>gi|148544665|ref|YP_001272035.1| tRNA pseudouridine synthase A [Lactobacillus reuteri DSM 20016]
gi|184154018|ref|YP_001842359.1| tRNA pseudouridine synthase A [Lactobacillus reuteri JCM 1112]
gi|194466922|ref|ZP_03072909.1| tRNA pseudouridine synthase A [Lactobacillus reuteri 100-23]
gi|227363788|ref|ZP_03847895.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM2-3]
gi|325682999|ref|ZP_08162515.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM4-1A]
gi|166991164|sp|A5VLH4.1|TRUA_LACRD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|229557996|sp|B2G8U7.1|TRUA_LACRJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|148531699|gb|ABQ83698.1| tRNA pseudouridine synthase A [Lactobacillus reuteri DSM 20016]
gi|183225362|dbj|BAG25879.1| tRNA pseudouridine synthase A [Lactobacillus reuteri JCM 1112]
gi|194453958|gb|EDX42855.1| tRNA pseudouridine synthase A [Lactobacillus reuteri 100-23]
gi|227071145|gb|EEI09461.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM2-3]
gi|324977349|gb|EGC14300.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM4-1A]
Length = 256
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 151/313 (48%), Gaps = 63/313 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y GT FSG Q Q N RTV L+ A +K P + + S RTDAGVHA
Sbjct: 1 MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSS-VVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
+ V H D+ P H S+ +R+A+N L DI++ V +DFHAR+
Sbjct: 61 LNQVAHFDI------------PYHLSNESMRKALNSILPL--DILIKKAELVDNDFHARY 106
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
A +TY YR+ G E ++ F+++ H L+L M++A LVG HDF+SF ASG Q
Sbjct: 107 SAHRKTYRYRVDQG-EFVNPFKRNYTSHFKYPLNLEKMRKAADDLVGTHDFTSFVASGSQ 165
Query: 233 ANSPIRTLDELHVS--EVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
A S +RT++ + + EV + +F NG
Sbjct: 166 AKSNVRTIENITIKRDEVRNEVVFDFTG------------------NG------------ 195
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
FLY+QVR++V L +G+ + V DV R+LKAK T A APA GL L
Sbjct: 196 ----------FLYNQVRIMVAFLLEIGSNQRPVDDVSRVLKAKDRTLARMTAPASGLYL- 244
Query: 351 FVKYDLPEDDQTD 363
V D +D+ D
Sbjct: 245 -VNVDYGTNDEKD 256
>gi|254460774|ref|ZP_05074190.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2083]
gi|206677363|gb|EDZ41850.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium HTCC2083]
Length = 259
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 144/303 (47%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F G Q+Q +V G +E A K +I + RTD+GVHA
Sbjct: 1 MPRYALKVEYHGAPFVGWQRQKTHVSVQGQIEAALAKLEPGNHTIGAAGRTDSGVHAWGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + D + A+N+ L+ + I + V D+HARF A E
Sbjct: 61 VAHCDLAKDW-----------DPFKLSGALNYHLKPD-PISIVACAEVNDDWHARFSALE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L P + + W V LD+ AMQ + L+G HDF++FR+S CQA SP
Sbjct: 109 RRYEFRLLMR-RPPATHDAGLVWQVPHLLDVNAMQAGAQHLLGLHDFTTFRSSICQAQSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL V ++ D P I
Sbjct: 168 LKTLDELKVRQI-----------DGPSGPEI-------------------------RFTV 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L +VG+G T DV+ L+A+ A P++P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLGSVGSGAWTPDDVKSALQAQDRQACGPVSPPHGLYLAHVTY-- 249
Query: 357 PED 359
PED
Sbjct: 250 PED 252
>gi|159044486|ref|YP_001533280.1| tRNA pseudouridine synthase A [Dinoroseobacter shibae DFL 12]
gi|189030132|sp|A8LNZ7.1|TRUA_DINSH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157912246|gb|ABV93679.1| pseudouridine synthase A [Dinoroseobacter shibae DFL 12]
Length = 257
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 145/303 (47%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G F+G Q+Q +V G +E A I+ + RTDAGVHA
Sbjct: 1 MPRFALKIEYDGAPFAGWQRQREQPSVQGAVEAALRGLQPDHAGIAAAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ R D + A+N L+ ++ R V DFHARF A E
Sbjct: 61 VAHVDLAR-----------DWDPFRLSEALNAHLRPAPVAVLAAAR-VGEDFHARFSALE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y +R+L P + + W V LD+ AM+E K L+G HDF++FR++ CQA SP
Sbjct: 109 RSYLFRLLVRRAP-ATHDAGLVWRVMNPLDVEAMREGAKYLIGKHDFTTFRSTMCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDE+ + E SP R +
Sbjct: 168 VKTLDEITIEE-------------SP-----------------------RDAGTEFRFHL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR IVG L+ VG G +DV+ L+A+ A P+ GL L V+Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGAWDPADVKTALEARDRAACGPVCAPQGLYLRAVRY-- 249
Query: 357 PED 359
PED
Sbjct: 250 PED 252
>gi|254293237|ref|YP_003059260.1| tRNA pseudouridine synthase A [Hirschia baltica ATCC 49814]
gi|254041768|gb|ACT58563.1| tRNA pseudouridine synthase A [Hirschia baltica ATCC 49814]
Length = 247
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 144/298 (48%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G+ + G Q+Q R+V VLEEA KF G+ V++ + RTDAGVHA
Sbjct: 1 MARFKLTIEYDGSPYVGWQRQKTHRSVQQVLEEAIPKFAGETVTVHGAGRTDAGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + VR A+NHF++ E + + V +FHARF A
Sbjct: 61 VAHIDLSK-----------EFTTDKVRDAMNHFMKDE-PVSILLAEEVSDEFHARFSAYA 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI+ L+ F+++ AW +D AM EA + LVG HDFS+FR + CQA SP
Sbjct: 109 RHYIYRIIDRRADLT-FDRNLAWRAMSPVDADAMHEAAQCLVGKHDFSTFRDAQCQAESP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL SK+ + G + +
Sbjct: 168 VKTL------------------------------SKIEVIRDGDEI----------NIYV 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFL+ QVR I G L +G G+ +S ++ IL A + +AP GL L V Y
Sbjct: 188 SAPSFLHRQVRSITGSLMEIGRGKKPISWMQEILGAADRSRCGTVAPPDGLYLSQVDY 245
>gi|307943162|ref|ZP_07658507.1| tRNA pseudouridine synthase A [Roseibium sp. TrichSKD4]
gi|307773958|gb|EFO33174.1| tRNA pseudouridine synthase A [Roseibium sp. TrichSKD4]
Length = 271
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 143/310 (46%), Gaps = 53/310 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F G Q+Q N + GV+E A F G+ V+I + RTD GVHA
Sbjct: 1 MPRYKLTVEYDGRPFCGWQRQSNGPSAQGVIERAIKAFSGEDVTIGGAGRTDTGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D +S+ P V A+N Q + +++ F ARF A
Sbjct: 61 VAHAD---LSEDWP--------EKTVMGALNFHCQPD-PVVILACEKKHDGFDARFSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRI + PL+ E AWHV ELD AM EA + VG HDF++FR S CQA SP
Sbjct: 109 RSYRYRIHNRLPPLT-HELGLAWHVKHELDADAMNEAAQEFVGHHDFTTFRHSRCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL+ F +R++
Sbjct: 168 VKTLEN----------------------------------------FTVRREGEIILAEC 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
+RSFL++QVR +VG L+ VG G T SDV L A+ A P+APA GL L V Y
Sbjct: 188 SSRSFLHNQVRSMVGTLRLVGEGRWTASDVGEALAARDRKACGPVAPADGLYLTRVDYRS 247
Query: 357 PEDDQTDAAE 366
E D A E
Sbjct: 248 VEADIAAADE 257
>gi|146276554|ref|YP_001166713.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17025]
gi|166228756|sp|A4WPU4.1|TRUA_RHOS5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|145554795|gb|ABP69408.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17025]
Length = 257
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 144/298 (48%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q +V G +E A + P +I+ + RTD GVHA
Sbjct: 1 MPRYALKIEYDGAPFAGWQRQAVLPSVQGAIEAALGRLEPGPHTIAAAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + D + A+N L+ + V V DFHARF A E
Sbjct: 61 VAHCDLGKDW-----------DPFRLAGALNAHLKPL-PVAVVAAARVGEDFHARFSAIE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L+ P V ++ R W V LD AM+EA LVG HDF++FRA GCQA SP
Sbjct: 109 RRYLFRLLARRAP-EVHDRGRVWRVPHPLDGAAMREAAAHLVGRHDFTTFRAIGCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL L +++ +PNG Y
Sbjct: 168 VKTLDEL-------------------TLETVE------VPNG-----------VEYRFRL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR IVG L+ VG G V+ L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGAWAPDRVKEALEARDRAACGPVCPPQGLYLTGVGY 249
>gi|56551706|ref|YP_162545.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis
ZM4]
gi|260752717|ref|YP_003225610.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|384411414|ref|YP_005620779.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|59803041|sp|Q9REQ0.2|TRUA_ZYMMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56543280|gb|AAV89434.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis
ZM4]
gi|258552080|gb|ACV75026.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|335931788|gb|AEH62328.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 245
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 138/293 (47%), Gaps = 57/293 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VE+ G F G Q+Q + T+ G +EEA GQP + + RTDAGVH +
Sbjct: 1 MNRYRLTVEFDGRNFMGWQRQKHGATIQGSIEEAGASIAGQPTPVQAAGRTDAGVHGLAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVR--RAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
H+DV R D + R A+N L+ I + V ++HARF
Sbjct: 61 TAHIDVAR-------------DFTPFRLMEALNARLKPR-PIAILSCEQVDPEWHARFSC 106
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y YRI++ PL++ E RAWHV + LD M A K L+G HDF++FR+ CQ+
Sbjct: 107 IGRRYLYRIINRRPPLTL-EAGRAWHVIKPLDAETMDIAAKRLIGLHDFTTFRSVHCQSK 165
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP++TLD L V + G + E+
Sbjct: 166 SPVKTLDHLDVRRI------------------------------GDQI----------EI 185
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
A ARSFL+HQVR +VG L VG G+ T D+ L+A+ A AP GL
Sbjct: 186 TAAARSFLHHQVRSMVGCLVLVGQGQWTADDMTTALEARNRAALGFNAPPDGL 238
>gi|427399170|ref|ZP_18890408.1| tRNA pseudouridine synthase A [Massilia timonae CCUG 45783]
gi|425721815|gb|EKU84722.1| tRNA pseudouridine synthase A [Massilia timonae CCUG 45783]
Length = 266
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 151/315 (47%), Gaps = 63/315 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + V+YIGT ++G QKQ TV LE A KF P+ + + RTDAGVHA
Sbjct: 1 MTRIALGVQYIGTGWNGYQKQPERNTVQDRLEIALEKFACVPLHTTCAGRTDAGVHAIEQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCV-----PSDFHAR 171
V H D + + P S V R VN FL I+V V DFHAR
Sbjct: 61 VVHFDTD---------LARPAQSWV--RGVNAFLPES--IVVRWAAVVEPDAEGQDFHAR 107
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
F A+ RTY Y + + P P ++ + W V LD+ M+E + L+G HDFSSFRASGC
Sbjct: 108 FSARSRTYHYVLYNHPNPSALLARRAGW-VFRPLDVERMREGARHLIGTHDFSSFRASGC 166
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
QAN+P++ + E+ ++ +G VF +
Sbjct: 167 QANTPVKDMHEVSIAR-----------------------------HGDIIVFTL------ 191
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
RA +FL+H VR IVG L +GTG + + +L+A++ AA+P GL
Sbjct: 192 -----RASAFLHHMVRNIVGSLIYIGTGRNEPAWMREVLEARSRDAAAPTFMPDGLYFAK 246
Query: 352 VKYD----LPEDDQT 362
++YD LP++D T
Sbjct: 247 IEYDPKWKLPQEDAT 261
>gi|296284450|ref|ZP_06862448.1| tRNA pseudouridine synthase A [Citromicrobium bathyomarinum JL354]
Length = 258
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 147/306 (48%), Gaps = 57/306 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +E+ GT F G Q+Q + +V +EEA GQ V++ + RTD GVHA +
Sbjct: 5 RYALTLEFDGTPFFGLQRQKDGPSVQQAVEEAAQAVTGQQVTLHSAGRTDTGVHAIAMRS 64
Query: 119 HVDVE-RISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H DVE +++ + GE A+N L+ I VT VP D+HARF R
Sbjct: 65 HFDVESKLTPFRMGE------------AINAHLRP-APIAVTHCEAVPEDWHARFSCIGR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI++ PL++ EK+RAW V+ E D AM A + LVG HDF++FR+ CQA SP+
Sbjct: 112 RYLYRIINRRAPLTL-EKNRAWLVSPECDAEAMHRAAQSLVGHHDFTTFRSVHCQAASPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V G + V
Sbjct: 171 KTLDRLDVE------------------------------RAGDEI----------RVHVA 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL+HQVR +VG L VG G + ++L+AK AP+ GL FV+ P
Sbjct: 191 ARSFLHHQVRSMVGCLALVGMGRWNEGRIAQVLEAKDRQELGLNAPSHGLY--FVEAVYP 248
Query: 358 EDDQTD 363
++ D
Sbjct: 249 DERAAD 254
>gi|400753415|ref|YP_006561783.1| tRNA pseudouridine synthase A [Phaeobacter gallaeciensis 2.10]
gi|398652568|gb|AFO86538.1| tRNA pseudouridine synthase A [Phaeobacter gallaeciensis 2.10]
Length = 257
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 144/303 (47%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G F+G Q+Q + +V G +E A + P +I+ + RTD GVH
Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIENALARLEPGPHTIAAAGRTDTGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + D + A+N L+ + + D V D+HARF A E
Sbjct: 61 VAHCDMVK-----------DWDPFRLSEALNFHLKPS-PVAIVDCARVEDDWHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + + + W + +LD AMQEA L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRILIRRAP-ATHDAGQVWQLNHDLDAGAMQEAANHLIGQHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL + V G + V
Sbjct: 168 LKTLDELRIERVQ----------------------------------GFSGPEIHFHV-- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G + DV+ L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWSPEDVKSALEAEDRAACGPVCPGHGLYLARVGY-- 249
Query: 357 PED 359
PE+
Sbjct: 250 PEN 252
>gi|117925388|ref|YP_866005.1| tRNA pseudouridine synthase A [Magnetococcus marinus MC-1]
gi|117609144|gb|ABK44599.1| tRNA pseudouridine synthase A [Magnetococcus marinus MC-1]
Length = 270
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 150/334 (44%), Gaps = 71/334 (21%)
Query: 51 MSTNKRI-----QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSS 105
MS KR+ QR+ I VE+ G+ FSG Q Q N +V LE+A +P+ + S
Sbjct: 1 MSGGKRLKQVGLQRFRITVEFDGSAFSGWQSQQNAPSVQQALEQALAPLHNEPIRVHGSG 60
Query: 106 RTDAGVHAASNVCHVDVERISKRKPGEVLPPH-DSSVVRRAVNHFLQSEGDIMVTDVRCV 164
RTDAGVHA V H D P H D++ R +N +++ I V + V
Sbjct: 61 RTDAGVHATGQVAHFDA------------PAHRDAATYLRILN--VRTPHSIAVLACQPV 106
Query: 165 PSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFS 224
FHAR+ A R Y YRI + P E+ R WH LD + EA +L+G HDFS
Sbjct: 107 AESFHARYDAYYRQYLYRINTRKIP-PALERSRVWHYPYLLDAERLAEASALLLGTHDFS 165
Query: 225 SFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFG 284
SFRA+GCQ+ SP++ + +
Sbjct: 166 SFRAAGCQSKSPVKFM----------------------------------------RLIQ 185
Query: 285 IRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPA 344
+++ ++V A +FL H VR +VG L VG G+ V+ V +L A+ A P APA
Sbjct: 186 WQQRGDEWQVSIGANAFLQHMVRNLVGTLVLVGKGDWPVARVAELLAARDRVQAGPTAPA 245
Query: 345 CGLSLGFVKYDLPEDDQTDAAESLETCPDPVSRK 378
GL L + Y P D E CP P++ K
Sbjct: 246 WGLYLTHICY--PGDQG-------EPCP-PITPK 269
>gi|89055953|ref|YP_511404.1| tRNA pseudouridine synthase A [Jannaschia sp. CCS1]
gi|123400973|sp|Q28LN3.1|TRUA_JANSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|88865502|gb|ABD56379.1| tRNA pseudouridine synthase A [Jannaschia sp. CCS1]
Length = 261
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 143/299 (47%), Gaps = 49/299 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY +EY G F G Q+Q + +V G +E A K +I+ + RTD GVHA
Sbjct: 1 MPRYAFRIEYDGHPFKGWQRQTDLPSVQGAVEAALAKLEADVPTIAAAGRTDTGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D++R D + A+N+ L+ + +T DFHARF A
Sbjct: 61 VAHADMQR-----------DWDPFRLAEALNYHLKP-APVAITACARAHDDFHARFSATW 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YR++ PL V + AW V LD+ AM E + L+G HDF++FRA+ CQA SP
Sbjct: 109 RSYTYRMICRRAPL-VHARGHAWAVRGTLDVTAMAEGARHLIGKHDFTTFRATHCQALSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+T+DE+ V EV +P G F +
Sbjct: 168 IKTMDEIRVEEV-------------------------SLPAGTEIRFHL----------- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+A+SFL++QVR IVG L+ VG+G D+ R L+A +AP GL + V YD
Sbjct: 192 KAQSFLHNQVRSIVGSLEHVGSGAWAPDDMRRALEACDRAECGTVAPPDGLYMTGVGYD 250
>gi|453330528|dbj|GAC87274.1| tRNA pseudouridine synthase A [Gluconobacter thailandicus NBRC
3255]
Length = 259
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 150/307 (48%), Gaps = 60/307 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
I R+ + +EY GT + G Q+Q + ++ ++EEA K +G + VS + RTDAGVHA+
Sbjct: 6 IARWALKIEYDGTNYVGWQRQKDGVSIQSLIEEAASKLVGGRAVSSITAGRTDAGVHASG 65
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P + P + +R + ++L+ ++V V D+ ARF A
Sbjct: 66 MVIHLDF-------PADA--PINGRQIRDGMGYYLKPH-PVVVLQAVPVSLDWSARFSAT 115
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R+Y + IL+ P ++++ WHV LD+ MQE L+G HDF+SFRA CQA S
Sbjct: 116 WRSYRFTILNRPA-RPALQENKVWHVKRSLDVNLMQEGANFLLGSHDFTSFRAIACQAKS 174
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RTLD L++ HR E++
Sbjct: 175 AVRTLDVLNI-------------------------------------------HREGELV 191
Query: 296 ---ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
+ARSFL+HQVR +VG L VG+ + + IL+A+ AA P +P GL L V
Sbjct: 192 IVDTQARSFLHHQVRNMVGSLVMVGSRQWPTEKMRDILEARNRCAAGPTSPPDGLCLTGV 251
Query: 353 KYDLPED 359
Y PED
Sbjct: 252 GY--PED 256
>gi|158422420|ref|YP_001523712.1| tRNA pseudouridine synthase A [Azorhizobium caulinodans ORS 571]
gi|172048047|sp|A8IQL3.1|TRUA_AZOC5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|158329309|dbj|BAF86794.1| tRNA pseudouridine synthase [Azorhizobium caulinodans ORS 571]
Length = 258
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 148/298 (49%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY GT F+G Q Q TV GVL A F G+ ++ + RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGTPFAGWQIQAELPTVQGVLAAAVKGFSGEEAHVAGAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+ + R +P +V R A+ L+ + V V V DF ARF A +
Sbjct: 61 VAHIHLAR--DWRPDQV---------RDAMTAHLRPH-PVAVVAVERVADDFDARFSAVK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P ++DRAW V ++LD AM A + L+G HDF++FRA+ CQA SP
Sbjct: 109 RHYLYRIVNR-RPDLALDRDRAWRVPQKLDASAMHVAAQRLLGKHDFTTFRAAECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V+ S D+ IR ++
Sbjct: 168 EKTLDQLD------------------VMRSGDD---------------IR-------IVT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L VG G + D+ L A+ PMAPACGL L V Y
Sbjct: 188 SARSFLHHQVRSMVGSLIRVGEGRWSADDLADALAARDRRRCGPMAPACGLYLAAVSY 245
>gi|103485743|ref|YP_615304.1| tRNA pseudouridine synthase A [Sphingopyxis alaskensis RB2256]
gi|123253621|sp|Q1GWK1.1|TRUA_SPHAL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|98975820|gb|ABF51971.1| tRNA pseudouridine synthase A [Sphingopyxis alaskensis RB2256]
Length = 246
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 144/292 (49%), Gaps = 55/292 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G + G Q+Q + +V +EEA H+F + V + + RTDAGVHA +
Sbjct: 1 MTRFALTIEYDGRPYMGWQRQAHGPSVQQAIEEAIHRFTAEEVQVLSAGRTDAGVHAIAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
HVD+E+ P + A+N L+ I V VP D+HARF
Sbjct: 61 RAHVDIEK-----------PLTPFKLTEALNAQLRP-APIAVIGCEVVPDDWHARFACIG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRI++ PL+ ++K AW V LD+ AM EA + L+G HDF++FR++ CQ+ SP
Sbjct: 109 RSYEYRIVNRRAPLT-WDKGLAWQVARPLDVDAMHEAAQQLIGLHDFTTFRSAHCQSQSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI- 295
++TLD L VS +H +I
Sbjct: 168 VKTLDRLTVS-----------------------------------------RHGEEVIIE 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
A ARSFL+HQVR +VG L VG G+ + D++ L+A A AP GL
Sbjct: 187 AAARSFLHHQVRSMVGSLALVGHGKWSARDLKAALEAADRQALGLNAPPDGL 238
>gi|83748092|ref|ZP_00945121.1| tRNA pseudouridine synthase A [Ralstonia solanacearum UW551]
gi|207742812|ref|YP_002259204.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna
pseudouridylate synthaseI protein [Ralstonia
solanacearum IPO1609]
gi|83725278|gb|EAP72427.1| tRNA pseudouridine synthase A [Ralstonia solanacearum UW551]
gi|206594206|emb|CAQ61133.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna
pseudouridylate synthaseI protein [Ralstonia
solanacearum IPO1609]
Length = 274
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 144/302 (47%), Gaps = 58/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G FSG Q Q + TV VLE A +F G + +++ RTDAGVHA
Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H+D + + R+P + R N FL S + V + VP DFHARF A
Sbjct: 61 IVHLDTDLV--REPFSWV---------RGTNAFLPST--VAVRWAQAVPEDFHARFSAHR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
RTY+Y ++SGP S +A +V E LD+ AMQEA +VLVG HDFSSFRA+ CQ
Sbjct: 108 RTYYYALVSGPT-RSPLLGGKAGYVMLPPGEWLDVAAMQEAAQVLVGEHDFSSFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++TL V G VF
Sbjct: 167 AKSPVKTLYSAEVR------------------------------GQGEWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V R +FL+H VR I+G L A+G G + + +L A+ AA+P GL L V
Sbjct: 188 -VRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMPDGLYLAEV 246
Query: 353 KY 354
Y
Sbjct: 247 GY 248
>gi|194208171|ref|XP_001496445.2| PREDICTED: tRNA pseudouridine synthase-like 1-like [Equus caballus]
Length = 389
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 144/263 (54%), Gaps = 40/263 (15%)
Query: 98 PVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIM 157
PV +++SSRTDAGVHA SN H+DV+R S + PP V+ +A+N L+ I
Sbjct: 141 PVKLTISSRTDAGVHALSNAAHLDVQRRSGQ------PPFSPEVLAKALNTHLRHPA-IR 193
Query: 158 VTDVRCVPSDFHARFRAQERTYFYRILSG---PEPLSVFEKDRAWHV-TEELDLRAMQEA 213
V VPSDFHAR+ A RTY YR+ +G P+ LSVFE++R W + + LD+ AM+EA
Sbjct: 194 VLQAFRVPSDFHARYSATSRTYLYRLATGCPQPDQLSVFEQNRCWALRADSLDVAAMEEA 253
Query: 214 CKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKL 273
+ L+G HDFS+F+++G S +RTL VS + + + Q+S
Sbjct: 254 AQHLLGTHDFSAFQSAGSPTTSSVRTLRRASVSPDLPSPFV--LPQES------------ 299
Query: 274 GMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK 333
++ R + + ++SFLY QVR + VL AVG G LT + V+ IL+++
Sbjct: 300 -------------RRLRFWSLEFESQSFLYRQVRRMTAVLVAVGLGALTPAQVKMILESR 346
Query: 334 TVTA--ASPMAPACGLSLGFVKY 354
+ +APA GL L V Y
Sbjct: 347 DPLGRHQTRVAPAHGLFLKSVLY 369
>gi|386333122|ref|YP_006029291.1| trna pseudouridine synthase a [Ralstonia solanacearum Po82]
gi|334195570|gb|AEG68755.1| trna pseudouridine synthase a [Ralstonia solanacearum Po82]
Length = 274
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 147/302 (48%), Gaps = 58/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G FSG Q Q + TV VLE A +F G + +++ RTDAGVHA
Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H+D + + R+P + R N FL S + V + VP DFHARF A
Sbjct: 61 IVHLDTDLV--REPFSWV---------RGTNAFLPST--VAVRWAQAVPEDFHARFSAHR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
RTY+Y ++SGP + +A +V E LD+ AMQEA +VLVG HDFSSFRA+ CQ
Sbjct: 108 RTYYYALVSGPTRAPLL-GGKAGYVMLPPGESLDVAAMQEAAQVLVGEHDFSSFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T L+ +EV G VF
Sbjct: 167 AKSPVKT---LYSAEVRGQ---------------------------GEWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V R +FL+H VR I+G L A+G G + + +L A+ AA+P GL L V
Sbjct: 188 -VRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMPDGLYLAEV 246
Query: 353 KY 354
Y
Sbjct: 247 GY 248
>gi|304320576|ref|YP_003854219.1| tRNA pseudouridine synthase A [Parvularcula bermudensis HTCC2503]
gi|303299478|gb|ADM09077.1| tRNA pseudouridine synthase A [Parvularcula bermudensis HTCC2503]
Length = 253
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 143/300 (47%), Gaps = 55/300 (18%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I VE+ GT F G Q+Q N +V G +EEA + P + + RTD+GVHA +
Sbjct: 5 HRYRIEVEFDGTPFVGWQRQDNGPSVQGAIEEAAARLTQAPGACYGAGRTDSGVHAIAMT 64
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H+D+ + LPP + VR +N +L+ + + + V DFHARF+ R
Sbjct: 65 AHLDLAK--------ALPPDN---VRDGLNAYLR-PAPVSILLAQPVSPDFHARFQCHRR 112
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YR+L P V +DR WHV LD+ AM +A L+G HDF+++R++ CQA SP+
Sbjct: 113 HYLYRLLDRRSP-PVLMRDRVWHVIAPLDVDAMAKAAHPLIGQHDFTTYRSAHCQAESPL 171
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TL + V+ V G V
Sbjct: 172 KTLSQFEVTRV------------------------------GQEV----------HCALS 191
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A SFL++QVR +VG L VG G +S L+A A P+APA GL FVK D P
Sbjct: 192 APSFLHNQVRSLVGTLVQVGLGRAALSQPYDALQACDRRACGPVAPAHGLY--FVKADYP 249
>gi|218529891|ref|YP_002420707.1| tRNA pseudouridine synthase A [Methylobacterium extorquens CM4]
gi|254789640|sp|B7KVW3.1|TRUA_METC4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|218522194|gb|ACK82779.1| tRNA pseudouridine synthase A [Methylobacterium extorquens CM4]
Length = 250
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 139/299 (46%), Gaps = 51/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q+Q + TV +E A +F G+ ++ + RTDAGVHA
Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + + VR A+N L+ + + + VP +F AR A
Sbjct: 61 VAHLDLAKDWR-----------TDTVRDALNAHLRPQ-PVSILSAEVVPQEFDARHSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + + W V LD M A + L+G HDFS+FRA+ CQA SP
Sbjct: 109 RHYRYRILNRRSP-AALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTL++L V+ LF I VIA
Sbjct: 168 MRTLEQLDVTR-ERMGLFEEI------------------------------------VIA 190
Query: 297 -RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR + G L G L+ DV IL P+APACGL+ V Y
Sbjct: 191 TSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPACGLTFVGVDY 249
>gi|414341254|ref|YP_006982775.1| TruA [Gluconobacter oxydans H24]
gi|411026589|gb|AFV99843.1| TruA [Gluconobacter oxydans H24]
Length = 259
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 150/307 (48%), Gaps = 60/307 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
I R+ + +EY GT + G Q+Q + ++ ++EEA K +G + VS + RTDAGVHA+
Sbjct: 6 IARWALKIEYDGTNYVGWQRQKDGVSIQSLIEEAASKLVGGRAVSSITAGRTDAGVHASG 65
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P + P + +R + ++L+ ++V V D+ ARF A
Sbjct: 66 MVIHLDF-------PADA--PINGRQIRDGMGYYLKPH-PVVVLQAAPVSLDWSARFSAT 115
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R+Y + IL+ P ++++ WHV LD+ MQE L+G HDF+SFRA CQA S
Sbjct: 116 WRSYRFTILNRPA-RPALQENKVWHVKRSLDVNLMQEGANFLLGSHDFTSFRAIACQAKS 174
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RTLD L++ +R E++
Sbjct: 175 AVRTLDVLNI-------------------------------------------YREGELV 191
Query: 296 ---ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
+ARSFL+HQVR +VG L VG+ + + IL+AK AA P +P GL L V
Sbjct: 192 IVDTQARSFLHHQVRNMVGSLVMVGSRQWPTEKMRDILEAKNRCAAGPTSPPDGLCLTGV 251
Query: 353 KYDLPED 359
Y PED
Sbjct: 252 GY--PED 256
>gi|402772864|ref|YP_006592401.1| pseudouridine synthase [Methylocystis sp. SC2]
gi|401774884|emb|CCJ07750.1| Pseudouridine synthase [Methylocystis sp. SC2]
Length = 246
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 143/299 (47%), Gaps = 58/299 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSI-SLSSRTDAGVHAASNV 117
R+ + +EY G F G Q+Q N +V LEEA G ++ + RTDAGVHA +
Sbjct: 3 RFALTIEYDGGPFVGWQRQANGLSVQQRLEEAVAAINGGARAVVHGAGRTDAGVHARGQM 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSV--VRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
HVD+ R D V +R A+N L+ + I V R V DF ARF A
Sbjct: 63 AHVDLAR-------------DWRVDRLRDAINAHLKPD-PIAVLAARAVGEDFEARFSAI 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y Y I + PL++ RAWHV LD +AM +A + LVG HDF++FRAS CQANS
Sbjct: 109 RRHYLYVIDNRRAPLAL-NLGRAWHVKRPLDAQAMHDAAQSLVGRHDFTTFRASECQANS 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTL+ L V R+ E++
Sbjct: 168 PMRTLERLDV----------------------------------------RRDGERIEIV 187
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A ARSFL++QVR + G L+ VG+G+ V D+ L AK +AP GL L V Y
Sbjct: 188 ASARSFLHNQVRSMAGSLEHVGSGKWRVEDLALALHAKDRARCGQVAPPHGLYLVAVDY 246
>gi|227543592|ref|ZP_03973641.1| tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A]
gi|338202916|ref|YP_004649061.1| tRNA pseudouridine synthase A [Lactobacillus reuteri SD2112]
gi|227186432|gb|EEI66503.1| tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A]
gi|336448156|gb|AEI56771.1| tRNA pseudouridine synthase A [Lactobacillus reuteri SD2112]
Length = 256
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 150/311 (48%), Gaps = 59/311 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y GT FSG Q Q N RTV L+ A +K P + + S RTDAGVHA
Sbjct: 1 MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPNPAIPVIGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSS-VVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
+ V H D+ P H S+ +R+A+N L DI++ V +DFHAR+
Sbjct: 61 LNQVAHFDI------------PYHLSNESMRKALNSILPL--DILIKKAELVDNDFHARY 106
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
A +TY YR+ G E ++ F+++ H L+L M++A LVG HDF+SF ASG Q
Sbjct: 107 SAHRKTYRYRVDQG-EFVNPFKRNYTSHFKYPLNLEKMRKAANDLVGTHDFTSFVASGSQ 165
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A S +RT++ + +I +D + N G
Sbjct: 166 AKSNVRTIESI------------TIKRD-----ELRNEVVFDFTGNG------------- 195
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
FLY+QVR++V L +G+ + V DV R+L+AK T A APA GL L V
Sbjct: 196 --------FLYNQVRIMVAFLLEIGSNQRPVDDVSRVLEAKDRTLARMTAPASGLYL--V 245
Query: 353 KYDLPEDDQTD 363
D +D+ D
Sbjct: 246 NVDYGTNDEKD 256
>gi|338707445|ref|YP_004661646.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336294249|gb|AEI37356.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 245
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 140/291 (48%), Gaps = 53/291 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++RY + VE+ G F G Q+Q + +V G +EEA P + + RTDAGVH +
Sbjct: 1 MKRYRLTVEFDGRPFMGWQRQKHGPSVQGAIEEAGFSITNHPSPVQAAGRTDAGVHGLAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H+D+ R E P + A+N L+ + I + V S++HARF
Sbjct: 61 TAHIDIAR-------EFTPFR----LMEALNARLKPQ-PIAILACESVDSEWHARFSCVG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ E RAW +T+ LD AM +A K L+G HDF++FR+ CQ+ SP
Sbjct: 109 RRYLYRIINRRAPLAL-EAGRAWRITKPLDAEAMDKAAKRLIGLHDFTTFRSVHCQSQSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V+ N D S E+ A
Sbjct: 168 VKTLDNLDVTR----------NGD------------------------------SIEITA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
ARSFL+HQVR +VG L VG G+ + L+A+ A AP GL
Sbjct: 188 AARSFLHHQVRSMVGCLALVGQGQWNADTMSEALEARNRAALGFNAPPDGL 238
>gi|73667044|ref|YP_303060.1| tRNA pseudouridine synthase A [Ehrlichia canis str. Jake]
gi|123773369|sp|Q3YS43.1|TRUA_EHRCJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|72394185|gb|AAZ68462.1| tRNA pseudouridine synthase [Ehrlichia canis str. Jake]
Length = 245
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 146/298 (48%), Gaps = 56/298 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I +EY G+ F G Q+Q + ++ +LEEA KF + V+ ++ RTDAGVHA V
Sbjct: 2 RYKITIEYNGSNFIGWQRQKHLSNSIQEILEEAIFKFSRESVTTYVAGRTDAGVHALGQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ D+ VVR A+N+ L I V +V +FHARF A++R
Sbjct: 62 AHFDLT-----------ADFDAYVVRNAINYHLIPHS-ISVLNVEKTDDEFHARFSAKKR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y+I++ PL++ + +RAW V LD+ M A + + G HDFSSFRA CQ+ SP+
Sbjct: 110 HYLYKIINRYSPLTI-DYNRAWLVRNPLDVEKMMRAVEYIKGNHDFSSFRARHCQSKSPV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+T+D+L + I+ D + ++
Sbjct: 169 KTMDDLKI-----------IHSDQCI-----------------------------DIYFS 188
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A SFL++QVR+IVG L G + IL+AK + A AP GL FVK D
Sbjct: 189 AISFLHNQVRIIVGTLVECGKNSFPPEYTKDILEAKDRSYAGMTAPPYGLY--FVKVD 244
>gi|6685124|gb|AAF23795.1|AF213822_10 tRNA-pseudouridine synthase I [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 245
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 138/293 (47%), Gaps = 57/293 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VE+ G F G Q++ + T+ G +EEA GQP + + RTDAGVH +
Sbjct: 1 MNRYRLTVEFDGRNFMGWQRKKHGATIQGSIEEAGASIAGQPTPVQAAGRTDAGVHGLAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVR--RAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
H+DV R D + R A+N L+ I + V ++HARF
Sbjct: 61 TAHIDVAR-------------DFTPFRLMEALNARLKPR-PIAILSCEQVDPEWHARFSC 106
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y YRI++ PL++ E RAWHV + LD M A K L+G HDF++FR+ CQ+
Sbjct: 107 IGRRYLYRIINRRPPLTL-EAGRAWHVIKPLDAETMDIAAKRLIGLHDFTTFRSVHCQSK 165
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP++TLD L V + G + E+
Sbjct: 166 SPVKTLDHLDVRRI------------------------------GDQI----------EI 185
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
A ARSFL+HQVR +VG L VG G+ T D+ L+A+ A AP GL
Sbjct: 186 TAAARSFLHHQVRSMVGCLVLVGQGQWTADDMTTALEARNRAALGFNAPPDGL 238
>gi|344283027|ref|XP_003413274.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Loxodonta
africana]
Length = 399
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 155/289 (53%), Gaps = 44/289 (15%)
Query: 73 GSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAASNVCHVDVERISKRKPG 131
G+Q+ + V LEEA + +PV ++SSRTDAGVHA SN H+DV+R +PG
Sbjct: 134 GAQRAVG---VQNFLEEAAERLNSVEPVRFTISSRTDAGVHALSNSAHLDVQR----RPG 186
Query: 132 EVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSG---PE 188
+ PP ++ A+N ++ +V R VPSDFHAR A RTY YR+ +G P+
Sbjct: 187 Q--PPFSPEILVEALNGHMRHPAIRVVQAFR-VPSDFHARHTATSRTYLYRLATGCPQPD 243
Query: 189 PLSVFEKDRAWHV-TEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSE 247
LSVFE++ W + E LD+ AMQEA + L+G HDFS+F+++G A S +RTL VS
Sbjct: 244 QLSVFERNLCWALRAESLDVAAMQEAAQHLLGTHDFSAFQSAGSPARSSVRTLRRATVSP 303
Query: 248 VVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVR 307
SP +S +N + + + + ++SFLY QVR
Sbjct: 304 ----------GHASPFVSPQEN-----------------RALQFWNLEFESQSFLYRQVR 336
Query: 308 LIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLSLGFVKY 354
+ VL AVG G L + V+ IL+++ + +APA GL L V+Y
Sbjct: 337 RMTAVLVAVGLGMLMPAQVKAILESRDPLGKHQTRVAPAHGLFLMAVRY 385
>gi|359319522|ref|XP_003639105.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Canis lupus
familiaris]
Length = 294
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 156/308 (50%), Gaps = 47/308 (15%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVL---EEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
R L+ +Y G +G + VGVL EEA + PV ++SSRTDAGVHA
Sbjct: 11 RSLVYSQYWGRALNGVAAVRGSQRAVGVLNYLEEAAKRLNSVVPVRFTISSRTDAGVHAL 70
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S + PP V+ A+N ++ I V VPSDFHAR A
Sbjct: 71 SNAAHLDVQRRSGQ------PPFSPEVLAEALNAHVRHPA-IRVLQAFRVPSDFHARHAA 123
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+++G P+ LSVFE++R W + + LD+ AMQEA + L+G HDF +F+++G
Sbjct: 124 TSRTYLYRLVTGCHRPDQLSVFERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSAG 183
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSN-VFGIRKKH 289
S +RTL VS P+ GS V K+
Sbjct: 184 SPTTSSVRTLRRASVS-----------------------------PDPGSPFVLAQEKRL 214
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA--ASPMAPACGL 347
+ + +RSFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 215 HFWNLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQVKVILESRDPLGRHQARVAPAHGL 274
Query: 348 SLGFVKYD 355
L V Y+
Sbjct: 275 FLKSVLYE 282
>gi|395493023|ref|ZP_10424602.1| tRNA pseudouridine synthase A [Sphingomonas sp. PAMC 26617]
Length = 246
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 151/299 (50%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G F G Q+Q + TV +E A H G+ V++ + RTDAGVH +
Sbjct: 1 MTRFALTVEYDGRPFMGWQRQHHGPTVQASIERAAHAITGETVAVHAAGRTDAGVHGIAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H+D+ R ++ P ++ A+N L+ + + +T VP D+HARF
Sbjct: 61 RAHIDLAR-------DIAPFR----LQEALNAKLRPD-PVAITGCEIVPDDWHARFSCIG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RI++ PL+ FE+ AW + LD+ AM + LVG HDF++FR++ CQA+SP
Sbjct: 109 RHYEFRIVTRRAPLT-FERGLAWRIPAALDVAAMADGAARLVGRHDFTTFRSAHCQADSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L EVV+ G + V A
Sbjct: 168 LRTLDRL---EVVAE---------------------------GERI----------SVFA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG L VG G+ T +D+ L+A+ TA AP GL F++ D
Sbjct: 188 SARSFLHHQVRSMVGCLALVGEGKWTPADMTTALEARDRTALGFNAPPDGLY--FLRAD 244
>gi|423334733|ref|ZP_17312511.1| tRNA pseudouridine synthase A [Lactobacillus reuteri ATCC 53608]
gi|337728254|emb|CCC03349.1| tRNA pseudouridine synthase A [Lactobacillus reuteri ATCC 53608]
Length = 256
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 148/313 (47%), Gaps = 63/313 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y GT FSG Q Q N RTV L+ A +K P + + S RTDAGVHA
Sbjct: 1 MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSS-VVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
+ V H D+ P H S+ +R+A+N L DI++ V +DFHAR+
Sbjct: 61 LNQVAHFDI------------PYHLSNESMRKALNSILPL--DILIKKAELVDNDFHARY 106
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
A +TY YR+ G E ++ F+++ H L+L M++A LVG HDF+SF ASG Q
Sbjct: 107 SAHRKTYRYRVDQG-EFVNPFKRNYTSHFKYPLNLEKMRKAASDLVGTHDFTSFVASGSQ 165
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A S +RT++ + IR+
Sbjct: 166 AKSNVRTIENI----------------------------------------TIRRDELRN 185
Query: 293 EVI--ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
EV+ FLY+QVR++V L +G+ + V DV R+L AK T A APA GL L
Sbjct: 186 EVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLTAKDRTLARMTAPASGLYL- 244
Query: 351 FVKYDLPEDDQTD 363
V D +D+ D
Sbjct: 245 -VNVDYGTNDEKD 256
>gi|315497922|ref|YP_004086726.1| tRNA pseudouridine synthase a [Asticcacaulis excentricus CB 48]
gi|315415934|gb|ADU12575.1| tRNA pseudouridine synthase A [Asticcacaulis excentricus CB 48]
Length = 257
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 141/304 (46%), Gaps = 54/304 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY VEY G + G Q Q N TV G LE A F G+ + I+ + RTD GVHA+
Sbjct: 1 MPRYSCLVEYDGRPYKGFQAQDNLPTVQGSLERAILGFSGETLRITAAGRTDTGVHASGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D+ + + VVR A+N +L E I V + V DF ARF A
Sbjct: 61 VITFDLPKTYR-----------PDVVRDAMNAYLIPE-PIAVREAAIVDDDFSARFSATG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P E+ R WHV + LD M +A + L+G HDF++FR + CQA SP
Sbjct: 109 RMYLYRILNRRAP-PALEQGRVWHVKKPLDAEVMADAAQHLIGRHDFTTFRDTECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TLD V V G + ++
Sbjct: 168 IKTLDIARVKRV------------------------------GEEI----------HLVF 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
+RSFL+ QVR + G L G G T +DV+ L+A+ A +AP GL L V ++
Sbjct: 188 ASRSFLHRQVRSMTGTLVEAGIGRWTAADVKAALEARDRRACGQVAPPEGLCLTHVTFE- 246
Query: 357 PEDD 360
PE D
Sbjct: 247 PEPD 250
>gi|88812707|ref|ZP_01127954.1| Pseudouridylate synthase [Nitrococcus mobilis Nb-231]
gi|88790123|gb|EAR21243.1| Pseudouridylate synthase [Nitrococcus mobilis Nb-231]
Length = 284
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 137/296 (46%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY G+RFSG Q+Q + +V LEEA + PV+++ + RTDAGVHA V
Sbjct: 27 RVALGIEYDGSRFSGWQRQSHRLSVQVALEEALSRVADHPVTVTCAGRTDAGVHATHQVI 86
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D P S R VN L GDI +T VR VP FHARF A R+
Sbjct: 87 HFDTT-----------APRPSRAWVRGVNSNL--PGDIRITWVRAVPQVFHARFAATARS 133
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y ILS P ++ + AW L L AM+ A + L+G HDFSS+RA CQA P+R
Sbjct: 134 YRYVILSRAVPPALHRRRVAW-TYRPLQLSAMRVAAQYLLGEHDFSSYRALACQARHPVR 192
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+ L ++ + V A
Sbjct: 193 TVHRLDITRCGD----------------------------------------YFYVDVTA 212
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR I GVL ++G+G IL+A+ TA APA GL L V+Y
Sbjct: 213 NAFLHHMVRNIAGVLLSIGSGARPPQWSWEILQARDRTAGGVTAPAGGLYLVAVRY 268
>gi|86139183|ref|ZP_01057753.1| tRNA pseudouridine synthase A [Roseobacter sp. MED193]
gi|85824027|gb|EAQ44232.1| tRNA pseudouridine synthase A [Roseobacter sp. MED193]
Length = 258
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 140/298 (46%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G F+G Q+Q + +V G +EEA K P +I+ + RTD GVH
Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEEALAKLEPGPHTIAAAGRTDTGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+++ P + A+N L+ + + D V ++HARF A E
Sbjct: 61 VAHCDLQK-----------PWSPFRLSEALNFHLKP-APVAIVDCAVVDPEWHARFSAIE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + + + W + +LD+ MQ+ L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRILIRRAP-ATHDAGQVWQINNDLDVERMQQGANHLLGNHDFTTFRSSICQAQSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLDEL + V G+ + V
Sbjct: 168 QKTLDELRIERVQ----------------------------------GLSGPEVHFHV-- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR VG L+ VG T DV+ L+A A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGADAWTPQDVKSALEACDRAACGPVCPGHGLYLARVGY 249
>gi|90419798|ref|ZP_01227707.1| tRNA pseudouridine synthase A [Aurantimonas manganoxydans SI85-9A1]
gi|90335839|gb|EAS49587.1| tRNA pseudouridine synthase A [Aurantimonas manganoxydans SI85-9A1]
Length = 259
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 143/298 (47%), Gaps = 52/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY GT + G Q+Q + V+E A F G+ ++ + RTDAGVHA+
Sbjct: 1 MPRFKLTIEYDGTPYCGWQRQKTDLSAQEVIETAVEGFTGEAATLFAAGRTDAGVHASGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ R + VR A+N L+ + + + V DF ARF A++
Sbjct: 61 VAHVDLRR-----------DWEPDTVRDALNAHLR-DAPVAILSAERVADDFDARFSARK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + P ++ R W V++ LD+ AM A + LVG HDF +FR++ CQA +P
Sbjct: 109 RFYLYRIFNRRAPTALL-IGRVWWVSKPLDVDAMHAAAQRLVGTHDFDTFRSAHCQAKNP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IRTL++L V +R + A
Sbjct: 168 IRTLEQLDV---------------------------------------VRGPGEEIHIHA 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+SFL++Q+R G LK VG G + +D+ L+A+ P+AP GL L V+Y
Sbjct: 189 MAQSFLHNQIRSFAGSLKLVGEGHWSAADLVAALEARDRKRCGPVAPPDGLYLTRVEY 246
>gi|372268713|ref|ZP_09504761.1| tRNA pseudouridine synthase A [Alteromonas sp. S89]
Length = 294
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 112/312 (35%), Positives = 145/312 (46%), Gaps = 69/312 (22%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ R + VEY GTR G QKQ + TV LE+A K +PV++ + RTDAGVHA+S
Sbjct: 24 LHRIALGVEYCGTRLRGFQKQKHDPLTVQETLEKALSKVAAEPVTLVCAGRTDAGVHASS 83
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRC-----VPSDFHA 170
V H D + +R + ++Q M DVR VP+ FHA
Sbjct: 84 QVVHFD------------------TTAQRPLKAWVQGVNTQMPFDVRVHWAQPVPAQFHA 125
Query: 171 RFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASG 230
RF A+ R+Y Y I S P + + W LDL AM+E + LVG HDFSSFRA+
Sbjct: 126 RFSARSRSYRYLIHSAPTRSAQAASEVTW-TERTLDLEAMREGARHLVGEHDFSSFRAAQ 184
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA SP+R L L + V +
Sbjct: 185 CQARSPVRRLTRLDIGRVGQLIVL------------------------------------ 208
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
EV A A FL+H VR I GVL AVG G+ + V ++L+A+ TAAS AP GL L
Sbjct: 209 --EVSATA--FLHHMVRNIAGVLMAVGRGDRSPEWVRQVLEARDRTAASVTAPPHGLYLV 264
Query: 351 FVKY----DLPE 358
V+Y LPE
Sbjct: 265 DVQYPEEFTLPE 276
>gi|409399291|ref|ZP_11249610.1| tRNA pseudouridine synthase A [Acidocella sp. MX-AZ02]
gi|409131531|gb|EKN01231.1| tRNA pseudouridine synthase A [Acidocella sp. MX-AZ02]
Length = 253
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 146/303 (48%), Gaps = 62/303 (20%)
Query: 60 YLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP-VSISLSS-RTDAGVHAASNV 117
+ + +EY GT F G Q+Q + + V+EEA + G ++ ++S+ RTDAGVHA + +
Sbjct: 4 WALEIEYDGTPFMGWQRQKHGLAIQQVIEEAASRIRGGAEITEAISAGRTDAGVHALAMM 63
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
++ LP +R A+N L+ I V P+ ++ARF A+ R
Sbjct: 64 VQIE------------LPDFTPYRIREAMNFHLKPH-PIAVLRCGVAPAGWNARFSAKSR 110
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
+Y Y IL+ P+P E +R WHV LD +AM A + L+G HDFSSFRAS CQA SP+
Sbjct: 111 SYRYVILNRPQP-PTLEVNRVWHVKTRLDEQAMHRAAQHLLGHHDFSSFRASACQAKSPM 169
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-- 295
RTLD + V HR E +
Sbjct: 170 RTLDYVSV-------------------------------------------HREGEKVIM 186
Query: 296 -ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR ++G LK VG G S + IL A++ A APA GL V+Y
Sbjct: 187 ETSARSFLHHQVRNMIGSLKMVGEGHWPESRMAEILAAQSRPKAGQTAPAEGLYFTGVEY 246
Query: 355 DLP 357
D P
Sbjct: 247 DPP 249
>gi|240138195|ref|YP_002962667.1| tRNA pseudouridine synthase A [Methylobacterium extorquens AM1]
gi|418059746|ref|ZP_12697685.1| tRNA pseudouridine synthase A [Methylobacterium extorquens DSM
13060]
gi|240008164|gb|ACS39390.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Methylobacterium extorquens
AM1]
gi|373566688|gb|EHP92678.1| tRNA pseudouridine synthase A [Methylobacterium extorquens DSM
13060]
Length = 250
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 140/302 (46%), Gaps = 53/302 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q+Q + TV +E A +F G+ ++ + RTDAGVHA
Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + + VR A+N L+ + + + V +F AR A
Sbjct: 61 VAHLDLAKDWR-----------TDTVRDALNAHLRPQ-PVAILSAEVVTQEFDARHSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + + W V LD M A + L+G HDFS+FRA+ CQA SP
Sbjct: 109 RHYRYRILNRRSP-AALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTL++L V+ LF I VIA
Sbjct: 168 MRTLEQLDVTR-ERMGLFEEI------------------------------------VIA 190
Query: 297 -RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR + G L G L+ DV IL P+APACGL+ FV D
Sbjct: 191 TSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPACGLT--FVGVD 248
Query: 356 LP 357
P
Sbjct: 249 YP 250
>gi|399991774|ref|YP_006572014.1| tRNA pseudouridine synthase A [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
gi|398656329|gb|AFO90295.1| tRNA pseudouridine synthase A [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
Length = 257
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 144/303 (47%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G F+G Q+Q + +V G +E+A + P +I+ + RTD GVH
Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIEDALARLEPGPHTIAAAGRTDTGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + D + A+N L+ + + D D+HARF A E
Sbjct: 61 VAHCDMVK-----------DWDPFRLSEALNFHLKP-APVAIVDCARAEDDWHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + + + W + +LD +MQEA L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRILIRRAP-ATHDAGQVWQLNHDLDAGSMQEAANHLIGQHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL + V G + V
Sbjct: 168 LKTLDELRIERVQ----------------------------------GFSGPEIHFHV-- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G + DV+ L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWSPEDVKSALEAEDRAACGPVCPGHGLYLARVGY-- 249
Query: 357 PED 359
PE+
Sbjct: 250 PEN 252
>gi|338972101|ref|ZP_08627479.1| tRNA pseudouridine synthase A [Bradyrhizobiaceae bacterium SG-6C]
gi|338234712|gb|EGP09824.1| tRNA pseudouridine synthase A [Bradyrhizobiaceae bacterium SG-6C]
Length = 245
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 141/298 (47%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE+A G+ V ++ + RTDAGVHA
Sbjct: 1 MPRYKLIIEYDGAPFWGWQYQDKGPSVQGALEDAVAAMTGERVRVNGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + + VR A+N L+ I V VP F ARF A +
Sbjct: 61 VAHIDLAKDYR-----------ADRVRDALNAHLRPH-PIGVLSAEIVPDTFDARFSATK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L++ + +AW V LD AM EA +VL+G HDF++FR + CQA SP
Sbjct: 109 RHYIYRIVNHRANLAL-KAGQAWRVPRSLDADAMHEAAQVLLGRHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD L V+ G V +
Sbjct: 168 EKTLDALDVARE------------------------------GDEVI----------ITT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G T D+ L+ + TA P+AP GL L V+Y
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGHGRWTAQDLRNALETRDRTACGPVAPPDGLYLVRVEY 245
>gi|421897020|ref|ZP_16327404.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna
pseudouridylate synthaseI protein [Ralstonia
solanacearum MolK2]
gi|206588185|emb|CAQ18754.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna
pseudouridylate synthaseI protein [Ralstonia
solanacearum MolK2]
Length = 274
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 145/302 (48%), Gaps = 58/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G FSG Q Q + TV VLE A +F G + +++ RTDAGVHA
Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H+D + + ++ R N FL S + V + VP DFHARF A
Sbjct: 61 IIHLDTDLV-----------REAFSWVRGTNAFLPST--VAVRWAQAVPEDFHARFSAHR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
RTY+Y ++SGP S +A +V E LD+ AMQEA +VLVG HDFSSFRA+ CQ
Sbjct: 108 RTYYYALVSGPT-RSPLLGGKAGYVMLPPGESLDVAAMQEAAQVLVGEHDFSSFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T L+ +EV G VF
Sbjct: 167 AKSPVKT---LYSAEVRGQ---------------------------GEWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V R +FL+H VR I+G L A+G G + + +L A+ AA+P GL L V
Sbjct: 188 -VRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMPDGLYLAEV 246
Query: 353 KY 354
Y
Sbjct: 247 GY 248
>gi|184155960|ref|YP_001844300.1| tRNA pseudouridine synthase A [Lactobacillus fermentum IFO 3956]
gi|238692990|sp|B2GDT8.1|TRUA_LACF3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|183227304|dbj|BAG27820.1| pseudouridylate synthase A [Lactobacillus fermentum IFO 3956]
Length = 258
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 146/310 (47%), Gaps = 55/310 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y G+ F+G Q Q RTV VLE A +K +P + + S RTDAGVHA
Sbjct: 1 MHRYKITFAYDGSNFAGFQIQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D+ P ++ P S+VR A+N L D++V + V DFHARF
Sbjct: 61 LGQVAHFDL-------PYQIPGP---SLVR-ALNSSLPL--DVLVKEATEVAPDFHARFD 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A + Y YR++ G E + F+++ H +D+ MQ A + VG HDF+SF ASG QA
Sbjct: 108 AHHKRYRYRVVGG-EFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQA 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +R +DE+ V D V + N
Sbjct: 167 TSNVRRIDEVTVVR--------DEENDEVVFDFVGN------------------------ 194
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+QVR++V L +G G V DV R++KAK A APA GL L V
Sbjct: 195 ------GFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAPASGLYLVEVT 248
Query: 354 YDLPEDDQTD 363
YD P + Q D
Sbjct: 249 YDSPANSQND 258
>gi|227515518|ref|ZP_03945567.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931]
gi|227086131|gb|EEI21443.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931]
Length = 258
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 146/310 (47%), Gaps = 55/310 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y G+ F+G Q Q RTV VLE A +K +P + + S RTDAGVHA
Sbjct: 1 MHRYKITFAYDGSNFAGFQVQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D+ P ++ P S+VR A+N L D++V + V DFHARF
Sbjct: 61 LGQVAHFDL-------PYQIPGP---SLVR-ALNSSLPL--DVLVKEATEVAPDFHARFD 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A + Y YR++ G E + F+++ H +D+ MQ A + VG HDF+SF ASG QA
Sbjct: 108 AHHKRYRYRVVGG-EFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQA 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +R +DE+ V D V + N
Sbjct: 167 TSNVRRIDEVTVVR--------DEENDEVVFDFVGN------------------------ 194
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+QVR++V L +G G V DV R++KAK A APA GL L V
Sbjct: 195 ------GFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAPASGLYLVEVT 248
Query: 354 YDLPEDDQTD 363
YD P + Q D
Sbjct: 249 YDSPANSQND 258
>gi|119383286|ref|YP_914342.1| tRNA pseudouridine synthase A [Paracoccus denitrificans PD1222]
gi|166228744|sp|A1AZF2.1|TRUA_PARDP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119373053|gb|ABL68646.1| tRNA pseudouridine synthase A [Paracoccus denitrificans PD1222]
Length = 261
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 142/304 (46%), Gaps = 52/304 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF---IGQPVSISLSSRTDAGVHA 113
+ R+ + +EY G+ F+G Q Q +V +E A + I+ + RTDAGVHA
Sbjct: 1 MPRFALLIEYDGSPFAGWQAQAERPSVQSTIEAALGRLDPGFAAGARIAAAGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D+ R D + A+N L+ ++ R V DFHARF
Sbjct: 61 TGQVAHADLAR-----------DWDPFRLSEALNWHLKPAPVAILAAAR-VADDFHARFS 108
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A ER Y +R+++ PL+ ++ RAW V LDL AM+ L+G HDF++FR++ CQA
Sbjct: 109 AHERRYLFRLVARRAPLT-HDRGRAWQVPHRLDLAAMRAGAAHLLGRHDFTTFRSTMCQA 167
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
NSP++TLDEL + E +P G R Y
Sbjct: 168 NSPVKTLDELTIDEAE-------------------------IPQG-----------REYR 191
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RARSFL++QVR IVG L+ VG G V L A A P+ P GL L V
Sbjct: 192 FFLRARSFLHNQVRSIVGTLERVGAGAWPPGRVAEALAACDRAACGPVCPPQGLYLTGVG 251
Query: 354 YDLP 357
Y+ P
Sbjct: 252 YETP 255
>gi|414168991|ref|ZP_11424828.1| tRNA pseudouridine synthase A [Afipia clevelandensis ATCC 49720]
gi|410885750|gb|EKS33563.1| tRNA pseudouridine synthase A [Afipia clevelandensis ATCC 49720]
Length = 245
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 141/298 (47%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE+A G+ V ++ + RTDAGVHA
Sbjct: 1 MPRYKLIIEYDGAPFWGWQYQDKGPSVQGALEDAVAAMTGERVRVNGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + + VR A+N L+ I V VP F ARF A +
Sbjct: 61 VAHIDLAKDYR-----------ADRVRDALNAHLRPH-PIGVLSAEIVPDTFDARFSATK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L++ + +AW V LD AM EA +VL+G HDF++FR + CQA SP
Sbjct: 109 RHYIYRIVNHRANLAL-KAGQAWRVPRSLDADAMHEAAQVLLGRHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD L V+ ++ +
Sbjct: 168 EKTLDALDVA----------------------------------------REGDEVTITT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G D+ L+A+ TA P+AP GL L V+Y
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGHGRWMAQDLRNALEARDRTACGPVAPPDGLYLVRVEY 245
>gi|378823182|ref|ZP_09845861.1| tRNA pseudouridine synthase A [Sutterella parvirubra YIT 11816]
gi|378597991|gb|EHY31200.1| tRNA pseudouridine synthase A [Sutterella parvirubra YIT 11816]
Length = 266
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 144/304 (47%), Gaps = 57/304 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT F+G Q Q + TV LEEA +F+ PV + RTDAGVHA V
Sbjct: 10 LGIEYDGTAFNGWQTQPDVPTVQDTLEEAIERFLTVPVPTICAGRTDAGVHATHQVVSFQ 69
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+++ R P +S V RA+N FL + V +R VP DFHARF A+ RTY Y
Sbjct: 70 TDKV--RSP-------ESWV--RAINTFLPK--SVAVRWMRPVPDDFHARFTARSRTYEY 116
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
IL+ P V W+ LD+ M+ L+G HDF+SFRA+ CQA SP+RT++
Sbjct: 117 WILNDPVRSPVMHGRTGWYF-RPLDVERMRAGAAHLLGEHDFTSFRAAECQAASPVRTVE 175
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
+L + + + G+R RA +F
Sbjct: 176 KLEIVRM-------------------------------GRLVGVR---------IRANAF 195
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY---DLPE 358
L H VR IVG L VG+G V+ +L AK+ A+P GL L V Y D+PE
Sbjct: 196 LQHMVRNIVGTLIYVGSGREEPGWVKEVLDAKSRAVAAPTFSPSGLYLTGVGYPGIDIPE 255
Query: 359 DDQT 362
++
Sbjct: 256 KGES 259
>gi|339024892|ref|ZP_08646784.1| tRNA pseudouridine synthase A TruA [Acetobacter tropicalis NBRC
101654]
gi|338750102|dbj|GAA10088.1| tRNA pseudouridine synthase A TruA [Acetobacter tropicalis NBRC
101654]
Length = 291
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 142/299 (47%), Gaps = 52/299 (17%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAASN 116
QR+ + +EY GT G Q+Q + +V +LEEA + G + VS + RTD+GVHA
Sbjct: 39 QRWAVKLEYDGTGLVGWQRQASGLSVQALLEEAATRMAGGRRVSSITAGRTDSGVHATGQ 98
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D P ++ P VR +++ L+ + V + V D+ ARF A
Sbjct: 99 VAHLDF-------PADM--PLLPYRVRDGLSYHLKPHA-VAVLEAAPVGLDWSARFSATW 148
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRIL+ P + WH+ LD+ MQE L+G HDF+SFRA CQA SP
Sbjct: 149 RSYRYRILNRPS-RPALAANHVWHLRSPLDIDLMQEGANHLIGSHDFTSFRAVACQARSP 207
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
RTLD L V G V+ +IA
Sbjct: 208 FRTLDILTVER------------------------------HGDEVW----------IIA 227
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+ARSFL+HQVR +VG L VG + + L+AK+ AA P AP GL L V Y+
Sbjct: 228 KARSFLHHQVRNMVGTLSLVGQKRWKPERIAQALEAKSRCAAGPTAPPEGLYLTGVGYE 286
>gi|408355518|ref|YP_006844049.1| tRNA pseudouridine synthase A [Amphibacillus xylanus NBRC 15112]
gi|407726289|dbj|BAM46287.1| tRNA pseudouridine synthase A [Amphibacillus xylanus NBRC 15112]
Length = 248
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 146/304 (48%), Gaps = 64/304 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RYL + Y G+ +SG Q Q N T+ V+E A K G+PV I+ S RTDAGVHA V
Sbjct: 2 RYLAIISYDGSNYSGYQIQPNQLTIQAVIEAALTKMHKGEPVKITASGRTDAGVHAYGQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D E +P S ++A+N L GDI+V DV+ V +FHARF A ++
Sbjct: 62 IHFDSEL--------DIP---ESNWKKALNSLL--PGDIVVLDVKQVSENFHARFDAIKK 108
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS-- 235
TY Y IL+ + + FE + HV E L++ M +A + L+G HDF++F C ANS
Sbjct: 109 TYIYTILNSADA-NPFEINYCAHVKERLNVDLMNQALQDLIGEHDFTAF----CAANSYV 163
Query: 236 ---PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
IRT+ V + +FS
Sbjct: 164 KGDKIRTIYHASCQRVNNKVVFS------------------------------------- 186
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
FLY+ VR+IVG L +G G+ +D++RI+++K T A AP GL L V
Sbjct: 187 ---VTGNGFLYNMVRIIVGTLIEIGLGQRPATDIKRIIESKDRTQAGKTAPPQGLYLNAV 243
Query: 353 KYDL 356
+YDL
Sbjct: 244 EYDL 247
>gi|333369743|ref|ZP_08461846.1| tRNA pseudouridine synthase A [Psychrobacter sp. 1501(2011)]
gi|332970004|gb|EGK09003.1| tRNA pseudouridine synthase A [Psychrobacter sp. 1501(2011)]
Length = 314
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 145/323 (44%), Gaps = 54/323 (16%)
Query: 38 PEEVPETRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQ 97
P P+++ V + + ++Q Y + +E+ G+ + G Q+Q V VLEE K +
Sbjct: 30 PAFEPDSKLVAQAKDPSDQLQTYALGIEFNGSNYRGWQRQQEVLCVQQVLEETLSKIANE 89
Query: 98 PVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIM 157
P+ + + RTDAGVH + + H + R L R N L DI
Sbjct: 90 PIEVVAAGRTDAGVHGGNMLAHFKTS--ANRGVYNWL---------RGANSLLPD--DIA 136
Query: 158 VTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVL 217
+ ++ +P DFHARF A R Y Y L+ P+ +V H+ E LDL MQ+A +
Sbjct: 137 IRWIQPMPDDFHARFGAIARRYRYITLNQPQRPAVLNH-LVTHIHEPLDLAKMQQAAAHI 195
Query: 218 VGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPN 277
VG HDFSSFRA+ CQ+N P+R +H +++ F
Sbjct: 196 VGQHDFSSFRAAACQSNQPVRN---IHHAKLFQHGQFI---------------------- 230
Query: 278 GGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA 337
VF I +A FL+H VR ++G L A+G GEL D RIL+AK T
Sbjct: 231 ----VFDI-----------QADGFLHHMVRNLMGTLFAIGKGELQPMDYLRILEAKDRTI 275
Query: 338 ASPMAPACGLSLGFVKYDLPEDD 360
A P A GL Y P D
Sbjct: 276 APPTASPDGLYFINAYYPQPYQD 298
>gi|344171739|emb|CCA84361.1| tRNA pseudouridylate synthase I [Ralstonia syzygii R24]
Length = 274
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 146/302 (48%), Gaps = 58/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G FSG Q Q + TV VLE A +F G + ++ RTDAGVHA
Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFAGVELPTIVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D + + R P + R N FL + V + VP DFHARF A
Sbjct: 61 VVHLDTDLV--RDPFSWV---------RGTNAFLPPT--VAVRWAQEVPEDFHARFSAHR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
RTY+Y ++SGP + +A +V E LD+ AMQEA +VLVG HDFSSFRA+ CQ
Sbjct: 108 RTYYYALVSGPTRAPLL-GGKAGYVMLPPGESLDVAAMQEAAQVLVGAHDFSSFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T ++S+ + G VF
Sbjct: 167 AKSPVKT-------------MYSAEARGQ-----------------GEWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V R +FL+H VR I+G L A+G G+ V+ + +L A+ AA+P GL L V
Sbjct: 188 -VRIRGSAFLHHMVRNIMGCLVAIGRGKRPVAWMGEVLAARDRKAAAPTFMPDGLYLAEV 246
Query: 353 KY 354
Y
Sbjct: 247 GY 248
>gi|300703716|ref|YP_003745318.1| tRNA pseudouridylate synthase i [Ralstonia solanacearum CFBP2957]
gi|421891538|ref|ZP_16322335.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum K60-1]
gi|299071379|emb|CBJ42698.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum CFBP2957]
gi|378963090|emb|CCF99083.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum K60-1]
Length = 274
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 146/302 (48%), Gaps = 58/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G FSG Q Q + TV VLE A +F G + +++ RTDAGVHA
Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H+D + + R+P + R N FL + V + VP DFHARF A
Sbjct: 61 IVHLDTDLV--REPFSWV---------RGTNAFLPPT--VAVRWAQAVPEDFHARFSAHR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
RTY+Y ++SGP S +A +V + LD+ AMQEA +VLVG HDFSSFRA+ CQ
Sbjct: 108 RTYYYALVSGPT-RSPLLGGKAGYVMLPPGQSLDVAAMQEAAQVLVGEHDFSSFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T L+ +EV G VF
Sbjct: 167 AKSPVKT---LYSAEVRGQ---------------------------GEWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V R +FL+H VR I+G L A+G G + + +L A+ AA+P GL L V
Sbjct: 188 -VRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMPDGLYLAEV 246
Query: 353 KY 354
Y
Sbjct: 247 GY 248
>gi|17546704|ref|NP_520106.1| tRNA pseudouridine synthase A [Ralstonia solanacearum GMI1000]
gi|42559848|sp|Q8XXX8.1|TRUA_RALSO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|17429003|emb|CAD15687.1| probable trna pseudouridine synthase a (trna-uridine isomerasei)
(trna pseudouridylate synthaseI protein [Ralstonia
solanacearum GMI1000]
Length = 274
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 142/302 (47%), Gaps = 58/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G FSG Q Q + TV VLE A +F G + +++ RTDAGVHA
Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALREFAGVALPTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D E + R P + R N FL + V + +P DFHARF A
Sbjct: 61 VVHLDTELV--RDPFSWV---------RGTNAFLPPT--VAVRWAQAMPEDFHARFSAHR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
RTY+Y + GP + E +A +VT + LD+ AM EA +VLVG HDFSSFRA+ CQ
Sbjct: 108 RTYYYALTYGPTRAPLLE-GKAGYVTLPPGQSLDVTAMHEAAQVLVGEHDFSSFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T+ V G VF
Sbjct: 167 AKSPVKTMYSTEVR------------------------------GQGEWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V R +FL+H VR I+G L A+G G+ + + +L A+ AA+P GL L V
Sbjct: 188 -VRIRGSAFLHHMVRNIMGCLVAIGRGKRPAAWMGEVLAARDRKAAAPTFMPDGLYLAEV 246
Query: 353 KY 354
Y
Sbjct: 247 GY 248
>gi|66811154|ref|XP_639285.1| hypothetical protein DDB_G0283061 [Dictyostelium discoideum AX4]
gi|60467961|gb|EAL65974.1| hypothetical protein DDB_G0283061 [Dictyostelium discoideum AX4]
Length = 343
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 154/317 (48%), Gaps = 31/317 (9%)
Query: 59 RYLIAVEYIGTRFSGSQK---QLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
RY I EYIG F+G Q+ + V VLE++ K G + I SSRTD GV A
Sbjct: 4 RYKIIYEYIGKSFTGFQRLKYPVVKLPVQQVLEDSLEKIHGYKIPIVGSSRTDHGVSAVG 63
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE--GDIMVTDVRCVPSDFHARFR 173
V H DV + K G +P + A+N+ + E I + V FH RF
Sbjct: 64 QVSHFDV-KTRTSKSGIEMPLLSPEELTMAINYNVGKEYLKSIRIIKTEIVDDKFHCRFN 122
Query: 174 AQERTYFYRILS--GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
A RTY YR+++ G + + + DR + V L+L M++A ++ +G HDFSSFR++ C
Sbjct: 123 ATSRTYLYRVMANCGRKQIPLELLDRVYLVGPILNLDEMRKASEMFIGTHDFSSFRSAKC 182
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSI----------DNSSKLGMPNGGSN 281
+ PIR++ + + ++ +F Q +P +I D L N G
Sbjct: 183 SSTRPIRSISHIKIYDLPLPDIF----QYNPSFQNISRSNTNYPIGDGEKNLDKKNTGLQ 238
Query: 282 VFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPM 341
FGI K AR+FL++QVR++V L VG GE+++ +E I K AA P
Sbjct: 239 YFGIEIK---------ARAFLHNQVRIMVASLIKVGEGEISIQQLEEIKDKKDRGAAPPT 289
Query: 342 APACGLSLGFVKYDLPE 358
A L+L V YD P+
Sbjct: 290 ASPEPLTLLTVSYDDPK 306
>gi|114763999|ref|ZP_01443240.1| tRNA pseudouridine synthase A [Pelagibaca bermudensis HTCC2601]
gi|114543591|gb|EAU46605.1| tRNA pseudouridine synthase A [Roseovarius sp. HTCC2601]
Length = 255
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 141/298 (47%), Gaps = 49/298 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q + +V G +E A + + +I+ + RTDAGVHA
Sbjct: 1 MPRYALLVEYDGRPFAGWQRQADQPSVQGAIEAALARLEKRDHTIAAAGRTDAGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+E+ D + A+N L+ + + V D+HARF A E
Sbjct: 61 VAHCDMEKA-----------WDPFRLSEALNFHLKP-APVAIRACAAVSDDWHARFSAHE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L P + E + W V L L AM+ L+G HDF++FR++ CQA SP
Sbjct: 109 RRYLFRLLVRRAP-ATLEAGQVWRVMNPLSLEAMRAGAAHLIGQHDFTTFRSTMCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++T+DE+ + + + A G+ +
Sbjct: 168 VKTMDEIRIEQTDTGA--------------------------GTE----------FRFHL 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR IVG L+ VG G DV L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGSWAPEDVRSALEARDRAACGPVCPPDGLYLMGVGY 249
>gi|227824316|ref|ZP_03989148.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21]
gi|352683828|ref|YP_004895812.1| tRNA pseudouridine synthase A [Acidaminococcus intestini RyC-MR95]
gi|226904815|gb|EEH90733.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21]
gi|350278482|gb|AEQ21672.1| tRNA pseudouridine synthase A [Acidaminococcus intestini RyC-MR95]
Length = 253
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 137/300 (45%), Gaps = 57/300 (19%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRT-VVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCH 119
+ V Y GT + G Q+Q + V VLE+A + + +SI + RTDAGVHA V
Sbjct: 6 MAVVAYDGTNYQGFQRQKDYGVGVQQVLEKALSTALHEDISIKAAGRTDAGVHALGQVIS 65
Query: 120 VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTY 179
+ +PP + RRA+ H L DI + + P FHARF A ++TY
Sbjct: 66 FETS--------SPIPPEN---YRRALQHLLPP--DIAIREAFIKPDGFHARFDALDKTY 112
Query: 180 FYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRT 239
Y +L P P + AW V L L AM EA +LVG HDFSSF+ G + SP+RT
Sbjct: 113 RYTVLYAPLPDPC-ARRYAWEVRSSLTLAAMNEAAALLVGTHDFSSFKNQGSEKTSPVRT 171
Query: 240 LDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARAR 299
L E + ++ +K R + R
Sbjct: 172 LYEAYWTQ---------------------------------------EKER-FTFTIRGD 191
Query: 300 SFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPED 359
FLY VR IVG L VGTGE TV+D ++ AK A APACGLSL V Y PE+
Sbjct: 192 GFLYRMVRNIVGCLVKVGTGEWTVADFAAVMAAKDRKKAGVAAPACGLSLVHVSY--PEE 249
>gi|404253348|ref|ZP_10957316.1| tRNA pseudouridine synthase A [Sphingomonas sp. PAMC 26621]
Length = 246
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 149/299 (49%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G F G Q+Q + TV +E A H G+ V++ + RTDAGVH +
Sbjct: 1 MTRFALTVEYDGRPFMGWQRQHHGPTVQASIERAAHAITGETVAVHAAGRTDAGVHGIAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H+D+ R ++ P ++ A+N L+ + + +T VP D+HARF
Sbjct: 61 RAHIDLAR-------DIAPFR----LQEALNAKLRPD-PVAITGCEIVPDDWHARFSCIG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RI++ PL+ FE+ AW + LD+ AM + LVG HDF++FR++ CQA+SP
Sbjct: 109 RHYEFRIVTRRAPLT-FERGLAWRIPAALDVAAMADGAARLVGRHDFTTFRSAHCQADSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L EVV+ G + V A
Sbjct: 168 LRTLDRL---EVVAE---------------------------GERI----------SVFA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG L VG G+ +D+ L A+ TA AP GL F++ D
Sbjct: 188 SARSFLHHQVRSMVGCLALVGEGKWAPADMTTALDARDRTALGFNAPPDGLY--FLRAD 244
>gi|393718837|ref|ZP_10338764.1| tRNA pseudouridine synthase A [Sphingomonas echinoides ATCC 14820]
Length = 246
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 146/301 (48%), Gaps = 55/301 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VE+ G + G Q+Q + +V +E A H G+ +++ + RTDAGVH
Sbjct: 1 MTRFALTVEFDGRPYMGWQRQHHGPSVQAAIERAAHAITGEEIAVHAAGRTDAGVHGLGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H+D+ R P + A+N L+ + I + D VP D+HARF
Sbjct: 61 RAHLDLTR-----------PFTPFRLMEALNAKLRPD-PIAILDCEIVPDDWHARFSCIG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RI++ PL+V E+ AW + LD+ AM + LVG HDF++FR++ CQA+SP
Sbjct: 109 RHYEFRIVTRRAPLTV-ERGLAWRIPAPLDVAAMADGAARLVGRHDFTTFRSAHCQADSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L V++ D S V A
Sbjct: 168 LRTLDRLD------------------VVAEGDRIS----------------------VFA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G+ T D+ L+A+ TA AP GL F++ D
Sbjct: 188 SARSFLHHQVRSMVGCLALVGEGKWTPEDITAALEARDRTALGFNAPPDGLY--FLRADY 245
Query: 357 P 357
P
Sbjct: 246 P 246
>gi|349686489|ref|ZP_08897631.1| tRNA pseudouridine synthase A [Gluconacetobacter oboediens 174Bp2]
Length = 273
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 142/300 (47%), Gaps = 56/300 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQL--NCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
R+ + +EY G F G Q+Q + ++ G+LE+A G+ V + RTDAGVHA+
Sbjct: 19 RWAVLMEYDGRGFVGWQRQQGDHLISIQGLLEDAASNLTAGRTVRSITAGRTDAGVHASG 78
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P +V S+ VR +N +++ ++V R V ++ARF A
Sbjct: 79 QVAHLDF-------PADVT--LSSATVRDGLNFYMKPH-PVVVLMARPVLPHWNARFSAC 128
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRIL+ P E+ WHV LD M A + LVG HDF+SFRAS CQA S
Sbjct: 129 SRAYRYRILNRPA-RPALEEGHVWHVRTPLDADVMHSAAQSLVGRHDFTSFRASACQARS 187
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+R+LD L V ++ +Y VI
Sbjct: 188 PVRSLDRLDV-----------------------------------------RREGAYVVI 206
Query: 296 -ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A ARSFL+HQVR + G LK VG G VE+ L A+ A P AP GL L V Y
Sbjct: 207 EAEARSFLHHQVRNMAGTLKLVGEGRWAPERVEQALAARDRRAGGPTAPPEGLCLTGVGY 266
>gi|347528919|ref|YP_004835666.1| tRNA pseudouridine synthase A [Sphingobium sp. SYK-6]
gi|345137600|dbj|BAK67209.1| tRNA pseudouridine synthase A [Sphingobium sp. SYK-6]
Length = 251
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 145/291 (49%), Gaps = 53/291 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VE+ G + G Q+Q + +V +EEA + +G P + + RTDAGVHA +
Sbjct: 1 MTRFALTVEFDGRPYMGWQRQAHGPSVQQHIEEALGRIVGAPPVVHCAGRTDAGVHALAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
HVD++ S P ++ A+N L+ E I + V D+HARF
Sbjct: 61 RAHVDLD--SAITPFRLM---------EALNAHLRPE-PIAIIGCETVADDWHARFSCLA 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRIL+ PL+ FE+ W V + LD M EA + LVG HDF++FR++ CQA+SP
Sbjct: 109 RSYDYRILNRRAPLT-FEQGLVWRVPQPLDSGRMHEAAQQLVGRHDFTTFRSAQCQADSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L V IR R V+A
Sbjct: 168 VRTLDRLDV---------------------------------------IRTGER-ISVLA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
RARSFL+HQVR +VG L VG G +VSD++ L A+ A AP GL
Sbjct: 188 RARSFLHHQVRSMVGCLVMVGAGSWSVSDLKAALDARDRAALGHNAPPDGL 238
>gi|187929218|ref|YP_001899705.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12J]
gi|238689527|sp|B2U6Z1.1|TRUA_RALPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|187726108|gb|ACD27273.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12J]
Length = 274
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 144/302 (47%), Gaps = 58/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G FSG Q Q + TV LE A +F G + +++ RTDAGVHA
Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDALESALRQFAGVALPTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D + + R+P + R N FL + V + +P DFHARF A
Sbjct: 61 VVHLDTDLV--REPFSWV---------RGTNAFLPPT--VAVRWAQEMPEDFHARFSAHR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
RTY+Y + GP + E D+A +V + LD+ AM EA +VLVG HDFSSFRA+ CQ
Sbjct: 108 RTYYYALTFGPTRAPLLE-DKAGYVMLPPGQSLDVAAMNEAAQVLVGEHDFSSFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T+ + V G VF
Sbjct: 167 AKSPVKTMYSIEVR------------------------------GEGEWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V R +FL+H VR I+G L A+G G VS + +L A++ AA+P GL L V
Sbjct: 188 -VRIRGSAFLHHMVRNIMGCLVAIGRGRQPVSWMGDVLAARSRVAAAPTFMPDGLYLAEV 246
Query: 353 KY 354
Y
Sbjct: 247 GY 248
>gi|260662783|ref|ZP_05863677.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN]
gi|260552864|gb|EEX25863.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN]
Length = 258
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 145/310 (46%), Gaps = 55/310 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y G+ F+G Q Q RTV LE A +K +P + + S RTDAGVHA
Sbjct: 1 MHRYKITFAYDGSNFAGFQVQPGERTVQQALERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D+ P ++ P S+VR A+N L D++V + V DFHARF
Sbjct: 61 LGQVAHFDL-------PYQIPGP---SLVR-ALNSSLPL--DVLVKEATEVAPDFHARFD 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A + Y YR++ G E + F+++ H +D+ MQ A + VG HDF+SF ASG QA
Sbjct: 108 AHHKRYRYRVVGG-EFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQA 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +R +DE+ V D V + N
Sbjct: 167 TSNVRRIDEVTVVR--------DEENDEVVFDFVGN------------------------ 194
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+QVR++V L +G G V DV R++KAK A APA GL L V
Sbjct: 195 ------GFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAPASGLYLVEVT 248
Query: 354 YDLPEDDQTD 363
YD P + Q D
Sbjct: 249 YDSPANSQND 258
>gi|399057198|ref|ZP_10743825.1| pseudouridylate synthase I [Novosphingobium sp. AP12]
gi|398042232|gb|EJL35266.1| pseudouridylate synthase I [Novosphingobium sp. AP12]
Length = 248
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 144/301 (47%), Gaps = 55/301 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +E+ G + G Q+Q + +V +EEA G+ V++ + RTDAGVHA
Sbjct: 1 MTRFALTLEFDGGPYMGLQRQSHGPSVQQAVEEAARAVTGETVAMHAAGRTDAGVHALGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H+DVE+ P + + A+N L+ I V D V D+HARF
Sbjct: 61 RAHIDVEK-----------PLPAFRLMGALNALLRPH-PIAVLDCMPVEDDWHARFSCTG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ E+ +AW V +D AMQ A + LVG HDF++FR++ CQA+SP
Sbjct: 109 RAYVYRIVNRRAPLTL-ERGKAWQVGTPIDAEAMQRAAQTLVGLHDFTTFRSAHCQASSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V R++ S + A
Sbjct: 168 VKTLDRLEV----------------------------------------RREGDSVLIEA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G + L AK A AP GL FV+ +
Sbjct: 188 EARSFLHHQVRSMVGCLALVGMGRWREEQLGEALAAKDRQALGLNAPPDGLY--FVRANY 245
Query: 357 P 357
P
Sbjct: 246 P 246
>gi|227530236|ref|ZP_03960285.1| tRNA pseudouridine synthase A [Lactobacillus vaginalis ATCC 49540]
gi|227349848|gb|EEJ40139.1| tRNA pseudouridine synthase A [Lactobacillus vaginalis ATCC 49540]
Length = 256
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 152/313 (48%), Gaps = 63/313 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y G+ FSG Q Q + RTV VL+ A +K P + + S RTDAGVHA
Sbjct: 1 MYRYKITFAYDGSNFSGFQIQPHKRTVEQVLKNAVNKIAKHPTPEIPVIGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSS-VVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
+ V H D+ P H S+ +R+A+N L DI++ V SDFHAR+
Sbjct: 61 LNQVAHFDI------------PYHLSNESMRKALNSILPL--DILIKKAELVDSDFHARY 106
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
A +TY YR+ G E ++ F+++ H LDL M++A K +G HDF+SF ASG Q
Sbjct: 107 SAHNKTYRYRVDQG-EFVNPFKRNYTAHFKYPLDLTLMRKAAKNFIGEHDFTSFVASGSQ 165
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A S +RT+ ++ + R K R+
Sbjct: 166 AKSNVRTVYKIDIK---------------------------------------RDKLRN- 185
Query: 293 EVI--ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
EV+ FLY+Q+R++V L +G+ + V DV+R+L AK T A APA GL L
Sbjct: 186 EVVFDFTGNGFLYNQIRIMVAFLLEIGSKQRPVDDVKRVLAAKDRTQARMTAPASGLYL- 244
Query: 351 FVKYDLPEDDQTD 363
V D D ++D
Sbjct: 245 -VSVDYGNDRESD 256
>gi|393771426|ref|ZP_10359898.1| tRNA pseudouridine synthase A [Novosphingobium sp. Rr 2-17]
gi|392723190|gb|EIZ80583.1| tRNA pseudouridine synthase A [Novosphingobium sp. Rr 2-17]
Length = 249
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 137/302 (45%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +E+ G F G Q+Q + TV +EEA +GQPV + + RTDAGVHA
Sbjct: 1 MPRFALTIEFDGGPFMGLQRQAHGPTVQQTIEEAAELILGQPVIMHAAGRTDAGVHALGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H+D + P A+N L+ I D VP D+HARF
Sbjct: 61 RVHLDSPK-----------PLSPFRFMEALNARLRPN-PIAALDCVEVPEDWHARFLCSG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRI++ PL++ E RAWHV LD AM A + LVG HDF++FR+ CQA SP
Sbjct: 109 RSYLYRIINRRAPLTL-EHGRAWHVIRPLDADAMHRAAQALVGMHDFTTFRSVQCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++T+D + V L +
Sbjct: 168 LKTIDRIAVRREGDVVLIETA--------------------------------------- 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G + L+A+ A AP GL FVK D
Sbjct: 189 -ARSFLHHQVRSMVGCLTLVGLGRWPEERIAEALEARDRQALGHNAPPEGLY--FVKADY 245
Query: 357 PE 358
P+
Sbjct: 246 PQ 247
>gi|426240431|ref|XP_004014106.1| PREDICTED: tRNA pseudouridine synthase-like 1, partial [Ovis aries]
Length = 271
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 152/294 (51%), Gaps = 44/294 (14%)
Query: 72 SGSQKQLNCRTVVGV---LEEAFHKFIGQ-PVSISLSSRTDAGVHAASNVCHVDVERISK 127
SG + VGV LEEA + PV ++SSRTDAGVHA SN H+D++R S
Sbjct: 7 SGVAAVRGVQRAVGVQNYLEEAAERLNSVVPVKFTVSSRTDAGVHALSNAAHLDIQRRSD 66
Query: 128 RKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSG- 186
LPP V+ A+N L+ I V VPS FHAR A RTY YR+ +G
Sbjct: 67 ------LPPFSPEVLTEALNTHLKHPA-IRVLQAFRVPSHFHARHAAISRTYLYRLATGC 119
Query: 187 --PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDEL 243
P+ + VFE++R W + + LD+ AMQEA + L+G HDFS+F+++G A+SP+RTL
Sbjct: 120 PRPDRVPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPASSPVRTLRRA 179
Query: 244 HVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLY 303
VS D +S +P ++ + + + ++SFLY
Sbjct: 180 SVSP--------------------DPASPFVLPEES-------RRLQFWSLEFESQSFLY 212
Query: 304 HQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLSLGFVKYD 355
QVR + VL AVG G L + V+ IL+++ S +APA GL L V Y+
Sbjct: 213 KQVRRMTAVLVAVGLGALMPAQVKAILESQDPLGKHQSRVAPAHGLFLKSVLYE 266
>gi|58584685|ref|YP_198258.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419001|gb|AAW71016.1| Pseudouridylate synthase (tRNA psi55) [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 249
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 141/297 (47%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I +EY G+ FSG QKQ + ++ +E A F G+ V++ RTDAGVHA V
Sbjct: 6 RYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGEKVTLHCGGRTDAGVHALGQV 65
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ER + +R A+N+ L+S I+V + V + FH+RF A++R
Sbjct: 66 AHFDMER-----------KFELYKIRNAINYHLKSI-PIVVLNAETVDNTFHSRFSAKKR 113
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI++ P + E AW V LD+ M+EA K L+G H+ SFR+ CQA +PI
Sbjct: 114 YYEYRIINRYAP-AALEAGYAWQVFNPLDVNIMREAAKYLLGKHNLLSFRSKDCQATNPI 172
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+D++ + + GS+++ +
Sbjct: 173 RTIDDIDIVQ------------------------------NGSHIY----------IKIS 192
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFL++QVR+IVG L G + IL AA AP GL L + Y
Sbjct: 193 AISFLHNQVRIIVGTLVEFGKSRTNPQKMLNILNQCKRNAAGVTAPPFGLYLAKIDY 249
>gi|381161120|ref|ZP_09870351.1| pseudouridylate synthase I [Thiorhodovibrio sp. 970]
gi|380877356|gb|EIC19449.1| pseudouridylate synthase I [Thiorhodovibrio sp. 970]
Length = 279
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 144/313 (46%), Gaps = 56/313 (17%)
Query: 53 TNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVH 112
T + R + +EY G+ FSG Q Q + TV ++ A + PV + + RTDAGVH
Sbjct: 4 TEAQSYRIALGIEYDGSCFSGWQMQHHAPTVQQEVQAAASRVADHPVVLHCAGRTDAGVH 63
Query: 113 AASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
A + V H D + S+ + VL +N L E I + R +P+DFHARF
Sbjct: 64 ALAQVVHFDTQ-ASRTERSWVL----------GINANLPPE--IAIRWARAMPADFHARF 110
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
A+ER Y Y IL+ P ++ + W LDL M+EA + LVG HDFSSFRA GCQ
Sbjct: 111 SARERHYRYLILNRPTRPALLARRAVW-THRPLDLEPMREAGRALVGTHDFSSFRALGCQ 169
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP+RTL L +S ++
Sbjct: 170 AKSPVRTLYYLELS----------------------------------------RQGDLI 189
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
E+ A FL+H VR I GVL A+G G+ V E++L + T AP GL L V
Sbjct: 190 ELAVGADGFLHHMVRNIAGVLMAIGRGDAPVEWTEQLLAERDRTRGGVTAPPQGLYLSAV 249
Query: 353 KYDLPEDDQTDAA 365
Y PE Q +A
Sbjct: 250 DY--PEHYQLPSA 260
>gi|402496650|ref|YP_006555910.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649923|emb|CCF78093.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 245
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 142/297 (47%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I EY G+ FSG QKQ + ++ +E A F G+ +++ RTDAGVHA V
Sbjct: 2 RYKITTEYNGSSFSGWQKQQHSSNSIQETIENAIFNFSGEKITLHCGGRTDAGVHALEQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ER K +R A+N+ L+S ++V +V V FH+RF A++R
Sbjct: 62 AHFDMEREFKLHR-----------IRTAINYHLKSV-PVVVLNVETVNDAFHSRFSAKKR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI++ P + E W V LD+ M++A K L+G H+ SSFR+ CQA +PI
Sbjct: 110 HYEYRIINRYAP-AALEAGYVWQVFNPLDVDIMRKAAKHLLGKHNLSSFRSKDCQAKNPI 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+D++ + + GS+++ +
Sbjct: 169 RTIDDIEIIQ------------------------------NGSHIY----------IKIS 188
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFL+ QVR+IVG L G + ++ IL AA AP CGL L + Y
Sbjct: 189 AISFLHKQVRIIVGTLVEFGKNKTNPQEMLNILNQHKRKAAGVTAPPCGLYLVKIDY 245
>gi|259502563|ref|ZP_05745465.1| tRNA pseudouridine synthase A [Lactobacillus antri DSM 16041]
gi|259169515|gb|EEW54010.1| tRNA pseudouridine synthase A [Lactobacillus antri DSM 16041]
Length = 256
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 147/303 (48%), Gaps = 59/303 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y G FSG Q Q + RTV VL+ A +K P VS+ S RTDAGVHA
Sbjct: 1 MYRYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKHPDPPVSVIGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSS--VVRRAVNHFLQSEGDIMVTDVRCVPSDFHAR 171
+ V H D+ P+ S +R+A+N L DI+V V +FHAR
Sbjct: 61 LNQVAHFDI-------------PYQLSDEAMRKALNSLLPL--DILVKKAERVDENFHAR 105
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
+ A +TY YR+ G + + F+++ H +D+ M+ A K +G HDF+SF ASG
Sbjct: 106 YSAHRKTYRYRVDQG-DFVDPFKRNYTAHYKVPVDIEKMRLAAKDFIGEHDFTSFVASGS 164
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
QA S +RT++++ ++N+D P VF
Sbjct: 165 QAKSNVRTVEKI------------TVNRD---------------PAQNEVVFEF------ 191
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
FLY+Q+R++V L VG+G+ VSDV+R+L AK T A APA GL L
Sbjct: 192 -----TGNGFLYNQIRIMVAFLLEVGSGQRPVSDVKRVLAAKDRTQARMTAPASGLYLVS 246
Query: 352 VKY 354
V Y
Sbjct: 247 VDY 249
>gi|284047733|ref|YP_003398072.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM
20731]
gi|283951954|gb|ADB46757.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM
20731]
Length = 245
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 133/291 (45%), Gaps = 54/291 (18%)
Query: 64 VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVE 123
V Y GTR+ G Q+Q N V VLE+A + + +P+ I + RTDAGVHA V
Sbjct: 9 VAYDGTRYQGFQRQKNGVGVQQVLEKALTEVLKEPILIKAAGRTDAGVHALGQVISFAT- 67
Query: 124 RISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRI 183
S R +PP + RRA+ L DI + + V DFHARF A ++TY Y+I
Sbjct: 68 --SSR-----IPPEN---YRRALEPHLPP--DIAIREAEVVRDDFHARFDAVDKTYQYKI 115
Query: 184 LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDEL 243
P P +++ W + E+LD+ AM A +L+G HDF+SF+ G Q SP+RTL E
Sbjct: 116 YYSPLPDPT-QRNTTWEIREKLDVEAMNRAAALLLGKHDFTSFKNQGSQDTSPVRTLTEA 174
Query: 244 HVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLY 303
H + +G F I FLY
Sbjct: 175 HWVQ-----------------------------DGNLYTFTI-----------TGDGFLY 194
Query: 304 HQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
VR IVG L VGTG+ D R++ AK A APA GL L V Y
Sbjct: 195 RMVRNIVGCLVRVGTGQWNEEDFARVMAAKNRKQAGMAAPAQGLYLMHVSY 245
>gi|75677245|ref|YP_319666.1| tRNA pseudouridine synthase A [Nitrobacter winogradskyi Nb-255]
gi|123759229|sp|Q3SN27.1|TRUA_NITWN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|74422115|gb|ABA06314.1| tRNA pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
Length = 255
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 137/299 (45%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q N +V G LE A G V + + RTDAGVHA +
Sbjct: 1 MPRYKLTIEYDGGPFCGWQYQTNGPSVQGALEAAVKAICGDDVRVHGAGRTDAGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R +P +R +N L+ I V + VP F ARF A+
Sbjct: 61 VAHCDIAR-------HFMP----DRLRDGLNAHLRPH-PIGVLEAEIVPDSFEARFSARR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + L++ + R W V LD AM A + L+G HDF++FR + CQA SP
Sbjct: 109 RHYIYRIANRRANLAI-DVGRVWRVPRPLDTEAMHAAAQRLLGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V I N G NV +I
Sbjct: 168 EKTLDQLDV---------------------IRN---------GDNV----------SIIT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARS+L+ QVR +VG L VG G D+ L A+ A P+AP GL L V Y+
Sbjct: 188 SARSYLHSQVRSMVGSLVWVGHGRWNADDLSGALAARRREACGPVAPPDGLYLARVDYE 246
>gi|241663409|ref|YP_002981769.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12D]
gi|309783472|ref|ZP_07678175.1| tRNA pseudouridine synthase A [Ralstonia sp. 5_7_47FAA]
gi|404396411|ref|ZP_10988205.1| tRNA pseudouridine synthase A [Ralstonia sp. 5_2_56FAA]
gi|240865436|gb|ACS63097.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12D]
gi|308917758|gb|EFP63452.1| tRNA pseudouridine synthase A [Ralstonia sp. 5_7_47FAA]
gi|348609962|gb|EGY59673.1| tRNA pseudouridine synthase A [Ralstonia sp. 5_2_56FAA]
Length = 274
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 144/302 (47%), Gaps = 58/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G FSG Q Q + TV VLE A +F G + +++ RTDAGVHA
Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLESALRQFAGVALPTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D + + R+P + R N FL + V + +P FHARF A
Sbjct: 61 VVHLDTDLV--REPFSWV---------RGTNAFLPPT--VAVRWAQEMPEGFHARFSAHR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
RTY+Y + GP + E D+A +V + LD+ AM EA +VLVG HDFSSFRA+ CQ
Sbjct: 108 RTYYYALTFGPTRAPLLE-DKAGYVMLPPGQSLDVEAMNEAAQVLVGEHDFSSFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T+ + V G VF
Sbjct: 167 AKSPVKTMYSVEVR------------------------------GEGEWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V R +FL+H VR I+G L A+G G VS + +L A++ AA+P GL L V
Sbjct: 188 -VRIRGSAFLHHMVRNIMGCLVAIGRGRQPVSWMGDVLAARSRVAAAPTFMPDGLYLAEV 246
Query: 353 KY 354
Y
Sbjct: 247 GY 248
>gi|323135724|ref|ZP_08070807.1| tRNA pseudouridine synthase A [Methylocystis sp. ATCC 49242]
gi|322398815|gb|EFY01334.1| tRNA pseudouridine synthase A [Methylocystis sp. ATCC 49242]
Length = 245
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 143/296 (48%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G F G Q+Q N +V LEEA G I + RTDAGVHA V
Sbjct: 3 RYALTIEYDGGPFVGWQRQANGVSVQQRLEEAVAAINGARAVIHGAGRTDAGVHALGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD+ R + + +R A+N L+ + + V R V +F ARF A R
Sbjct: 63 HVDLAREWR-----------ADRLRDALNAHLKPD-PVAVVSARAVDENFEARFSAIRRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + PL+V RAWHV LD +AM +A + LVG HDF++FRAS CQANSP+R
Sbjct: 111 YRYVIDNRRAPLTV-GLGRAWHVKRPLDAQAMHDAAQRLVGRHDFTTFRASECQANSPVR 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL+ L V R++ E++ A
Sbjct: 170 TLERLDV----------------------------------------RREGDRIEIVTCA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL++QVR + G L+ VG+G+ T D+ L+AK +AP GL L V Y
Sbjct: 190 RSFLHNQVRSMAGSLEHVGSGKWTADDLAAALEAKDRARCGQVAPPHGLYLVAVDY 245
>gi|328545265|ref|YP_004305374.1| tRNA pseudouridine synthase A [Polymorphum gilvum SL003B-26A1]
gi|326415007|gb|ADZ72070.1| tRNA pseudouridine synthase A [Polymorphum gilvum SL003B-26A1]
Length = 276
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 139/298 (46%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q+Q N +V V+E A F G+ V+I + RTD GVHA
Sbjct: 1 MPRYKLTIEYDGRPFCGWQRQANGPSVQAVIERAVKAFCGEEVTIGGAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ R P D+ V A+N Q + + + + + F +RF A
Sbjct: 61 VAHVDLSRDW---------PADT--VLGALNFHCQPD-PVALLACEKMHAGFDSRFSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL+ +E+ AWHV LD AM A +V VG HDF++FR + CQA SP
Sbjct: 109 RAYRYRIVNRVPPLT-YERGLAWHVKPPLDAEAMHAAAQVFVGHHDFTTFRHARCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL+ F +R++
Sbjct: 168 VKTLE----------------------------------------FFAVRREGDVVVAEC 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+RSFL++QVR +VG L+ VG G V L A+ A P+AP GL L V Y
Sbjct: 188 ASRSFLHNQVRSMVGTLRLVGEGRWDAQTVREALAARNRKACGPVAPPDGLYLTRVDY 245
>gi|149185872|ref|ZP_01864187.1| tRNA pseudouridine synthase A [Erythrobacter sp. SD-21]
gi|148830433|gb|EDL48869.1| tRNA pseudouridine synthase A [Erythrobacter sp. SD-21]
Length = 249
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 143/303 (47%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +E+ GT F G Q+Q N +V LEEA + G+ V + + RTD GVHA +
Sbjct: 1 MTRFALTIEFDGTPFFGLQRQDNGPSVQQSLEEAAFRVTGENVRLHSAGRTDTGVHALAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H+D+E+ +P ++ ++ V I VT VP D+HARF
Sbjct: 61 RSHMDIEK--DIEPFRLMEALNAQV----------RPDPIAVTHCGVVPDDWHARFSCTG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRI + PL++ E++R W V ++LD AM A K LVG HDF++FR+ CQ+ SP
Sbjct: 109 RSYVYRIANRRAPLTL-ERNRLWQVPQDLDHEAMDRAAKALVGLHDFTTFRSVQCQSQSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V G V + A
Sbjct: 168 VKTLDRLDVE------------------------------RDGEEV----------RIHA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G + L+AK A AP GL FV
Sbjct: 188 AARSFLHHQVRSVVGCLALVGMGRWREEQLAEALEAKDRQALGLNAPPHGLY--FVAATY 245
Query: 357 PED 359
P++
Sbjct: 246 PDE 248
>gi|326932368|ref|XP_003212291.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Meleagris
gallopavo]
Length = 292
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 162/319 (50%), Gaps = 48/319 (15%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYL+ +Y GT++SG ++ VGV LE+A P+ +SSRTD+GVHA
Sbjct: 7 RYLVFFQYWGTKYSGVMHTSAEQSGVGVQNYLEKAAQNLKPVVPIKFHISSRTDSGVHAL 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
N H+D++R PG+ P ++ +NH L+ E +++ R V ++FHARF A
Sbjct: 67 CNSAHLDIQR----APGK--PAFQEKMLIGCLNHHLKPEPIRILSAYR-VTNNFHARFSA 119
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTE-ELDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+L G + VFE+D W T L++ AMQ+A + L+G HDFS+F
Sbjct: 120 LSRTYIYRLLMGCTHHSEIPVFERDLCWAPTGGYLNVPAMQDAAQFLLGTHDFSTF---- 175
Query: 231 CQANS--PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
C NS P R+ V T L + I S LS L
Sbjct: 176 CSLNSETPFRS--------PVKTILQADIQPSSGFLSHHYEYRGL--------------- 212
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASP--MAPACG 346
+ +E+ ++RSFLY QVR +VG L AVG G+L ++ +L+ K A P MAP+ G
Sbjct: 213 -QFWELKFKSRSFLYRQVRRMVGALVAVGQGKLAPYHIKELLEMKDARAFPPFAMAPSSG 271
Query: 347 LSLGFVKYDLPEDDQTDAA 365
L L V+Y+ D QT A
Sbjct: 272 LFLKSVEYN-EADLQTTVA 289
>gi|380794857|gb|AFE69304.1| tRNA pseudouridine synthase-like 1, partial [Macaca mulatta]
Length = 268
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 149/279 (53%), Gaps = 41/279 (14%)
Query: 83 VVGVLEEAFHKFIGQ-PVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSV 141
V LEEA + PV ++SSRTDAGVHA SN H+DV+R S R PP V
Sbjct: 5 VQNYLEEAAQRLNSVVPVRFTISSRTDAGVHALSNAAHLDVQRRSGR------PPFPPEV 58
Query: 142 VRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLS---VFEKDRA 198
+ A+N L+ ++ R VPSDFHAR A RTY YR+++G L+ VFE++
Sbjct: 59 LAEALNTHLRHPAIRVLRAFR-VPSDFHARHAATSRTYLYRLVTGCHRLAELPVFERNLC 117
Query: 199 WHVTEE-LDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSI 257
W + + LD+ AMQEA + L+G HDFS+F+++G SP+RTL + VS
Sbjct: 118 WTLQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSP---------- 167
Query: 258 NQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVG 317
Q SP+++ ++ +K R + + ++SFLY QVR + VL AVG
Sbjct: 168 GQASPLVTPEES-----------------RKLRFWSLEFESQSFLYRQVRRMTAVLVAVG 210
Query: 318 TGELTVSDVERILKAKTVTAA--SPMAPACGLSLGFVKY 354
G L + V+ IL+++ + +APA GL L V Y
Sbjct: 211 LGALAPAQVKTILESQDPLGKHQARVAPAHGLFLKSVLY 249
>gi|299066408|emb|CBJ37593.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum CMR15]
Length = 274
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 142/302 (47%), Gaps = 58/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G FSG Q Q + TV VLE A +F G + +++ RTDAGVHA
Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALREFAGVVLPTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D + + R P + R N FL + V + +P DFHARF A
Sbjct: 61 VIHLDTDLV--RDPFSWV---------RGTNAFLPPT--VAVRWAQAMPEDFHARFSAHR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
RTY+Y + GP + E +A +VT + LD+ AM EA +VLVG HDFSSFRA+ CQ
Sbjct: 108 RTYYYALTYGPTRAPLLE-GKAGYVTLPPGQSLDVAAMHEAAQVLVGEHDFSSFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T+ V G VF
Sbjct: 167 AKSPVKTMYSAEVR------------------------------GQGEWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V R +FL+H VR I+G L A+G G+ + + +L A+ AA+P GL L V
Sbjct: 188 -VRIRGSAFLHHMVRNIMGCLVAIGRGKRPAAWMGEVLAARERKAAAPTFMPDGLYLAEV 246
Query: 353 KY 354
Y
Sbjct: 247 GY 248
>gi|217977314|ref|YP_002361461.1| tRNA pseudouridine synthase A [Methylocella silvestris BL2]
gi|254789643|sp|B8ENG8.1|TRUA_METSB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|217502690|gb|ACK50099.1| tRNA pseudouridine synthase A [Methylocella silvestris BL2]
Length = 248
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 138/297 (46%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G F G Q+Q N +V +E A F G+ V+I + RTDAGVHA V
Sbjct: 3 RFKLLIEYDGAPFVGWQRQANGFSVQEAIETALGGFTGESVAIHGAGRTDAGVHARGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD R +P V+R A N +L+ I + V +F ARF A R
Sbjct: 63 HVDFSR--DWRP---------DVLRDAANAWLRPN-PIAILKAERVDDEFSARFSAVRRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y+I++ L++ E R W + LD AM EA + L+G HDFS+FR S CQA SP+R
Sbjct: 111 YLYKIINRRASLTL-EAGRCWAIRRSLDAGAMHEAAQTLLGFHDFSTFRDSECQAESPLR 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL+ V G N+ E+ A
Sbjct: 170 TLERFDV------------------------------LRDGENI----------EIHVAA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RSFL+ QVR +VG L VG+G+ V D+ L AK +AP GL L V Y+
Sbjct: 190 RSFLHSQVRSMVGSLAHVGSGKWRVEDMAEALAAKDRRRCGVVAPPEGLYLMQVDYE 246
>gi|221632949|ref|YP_002522172.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159]
gi|221155520|gb|ACM04647.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159]
Length = 279
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 145/302 (48%), Gaps = 42/302 (13%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
QRY + Y GT FSGSQ+Q RTV GVLEEA + G+PV ++L+ RTDAGVHA V
Sbjct: 4 QRYRLDFGYEGTAFSGSQRQPGLRTVQGVLEEALARLAGEPVRVALAGRTDAGVHAVGQV 63
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
D + R HD + + RA+ +L D++V V +P+ FHAR A +R
Sbjct: 64 ASFD---LCWR--------HDEATLARALQAWLPE--DVVVYRVARMPAGFHARRGAVDR 110
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI G +P +F + W LDLRAMQEA + +G HDF SF G P
Sbjct: 111 EYRYRIWQGEQP-PLFLRRFVWRFAGLLDLRAMQEAAQFFLGSHDFRSFAGHGL--GGPK 167
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
T + V T + + SPV+ + +++ E R
Sbjct: 168 AT------TPRVRTITMAEWHLLSPVVEPVGTGAQI------------------VEFRVR 203
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A FL VR +V L VGTG S + +L+ AA P AP GL L V+Y P
Sbjct: 204 ANGFLPQMVRTMVSALVRVGTGAAEPSWISELLERCDRRAAPPPAPPGGLVLWRVRY--P 261
Query: 358 ED 359
ED
Sbjct: 262 ED 263
>gi|300024227|ref|YP_003756838.1| tRNA pseudouridine synthase A [Hyphomicrobium denitrificans ATCC
51888]
gi|299526048|gb|ADJ24517.1| tRNA pseudouridine synthase A [Hyphomicrobium denitrificans ATCC
51888]
Length = 246
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 143/299 (47%), Gaps = 57/299 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY I +EY GT F G Q+Q ++ G LE A KF G+ + + RTDAGVHA V
Sbjct: 3 RYRITIEYDGTPFIGWQRQAEGVSIQGALETAIRKFSGEAPGVRGAGRTDAGVHALGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D+E+ +PG +R A+N L+ I V V F ARF A +R
Sbjct: 63 HFDLEKTW--EPGR---------IRDAMNFHLRPN-PIGVVAAAQVDDAFDARFSAVKRY 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YR+L+ P + ++ R W + LD AM A + LVG HDF++FRA+ CQA SP++
Sbjct: 111 YEYRLLTRRAP-PILQRHRVWWTMQNLDAAAMHAAAQELVGKHDFTTFRAAQCQAKSPVK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR- 297
TLD VS E++ R
Sbjct: 170 TLDVFDVSR------------------------------------------EGEEIVCRV 187
Query: 298 -ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG LK VG G+ + +D+ L A A P+APA GL L V Y+
Sbjct: 188 SARSFLHHQVRSMVGSLKLVGEGKWSRADLASALAAANREACGPVAPAAGLYLVGVDYE 246
>gi|218658453|ref|ZP_03514383.1| tRNA pseudouridine synthase A [Rhizobium etli IE4771]
Length = 244
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 133/266 (50%), Gaps = 55/266 (20%)
Query: 94 FIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE 153
G+ VS+ + RTD+GVHA V HVD+ + E P ++ A+N L+
Sbjct: 16 LTGETVSVRGAGRTDSGVHAMGQVIHVDLSK-------EWSPYQ----LQNALNAHLRLA 64
Query: 154 GD-IMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQE 212
G+ + + DV VP F ARF A R Y YRI+S PL++ E +AW V + LD M
Sbjct: 65 GERVSILDVEAVPEFFDARFSALRRHYLYRIVSRRAPLAL-EAGKAWWVPKTLDHEVMHA 123
Query: 213 ACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSK 272
A + LVG HDFS+FR++ CQANSP+RTLD L V+ S AL
Sbjct: 124 AAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR--SGALI------------------ 163
Query: 273 LGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKA 332
E+ A A+SFL++Q+R G LK G G+ T DVE L+A
Sbjct: 164 --------------------EIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEA 203
Query: 333 KTVTAASPMAPACGLSLGFVKYDLPE 358
+ A P+AP GL F++ D PE
Sbjct: 204 RNRKACGPVAPPDGLY--FLQVDYPE 227
>gi|334142225|ref|YP_004535432.1| tRNA pseudouridine synthase A [Novosphingobium sp. PP1Y]
gi|333940256|emb|CCA93614.1| tRNA pseudouridine synthase A [Novosphingobium sp. PP1Y]
Length = 248
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 140/291 (48%), Gaps = 53/291 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +E+ G+ F G Q+Q + +V +E+A H G+ + + RTDAGVHA +
Sbjct: 1 MTRYALTLEFDGSPFMGLQRQAHGPSVQQSVEDAVHSITGETAIMHAAGRTDAGVHALAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
HV++E+ P + A+N L+ + I V VP D+HARF
Sbjct: 61 RAHVEIEK-----------PFTPFRLMEAINAKLRPD-PIAVIACEEVPDDWHARFSCIG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ E+ +AW V + LD +AM A + LVG HDF++FR++ CQA SP
Sbjct: 109 RAYIYRIVNRRAPLTL-ERGKAWQVAKPLDAQAMHRAAQFLVGRHDFTTFRSAHCQAQSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V R++ + A
Sbjct: 168 LKTLDRLDV----------------------------------------RREGEHVLIEA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
ARSFL+HQVR +VG L VG G V L+A+ A AP GL
Sbjct: 188 EARSFLHHQVRSMVGCLAMVGMGRWREEQVREALEARDRQALGLNAPPDGL 238
>gi|85707833|ref|ZP_01038899.1| tRNA pseudouridine synthase A [Erythrobacter sp. NAP1]
gi|85689367|gb|EAQ29370.1| tRNA pseudouridine synthase A [Erythrobacter sp. NAP1]
Length = 247
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 142/302 (47%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +E+ GT F G Q+Q + +V +EEA H+ G+ ++ + RTD GVHA
Sbjct: 1 MTRFALTIEFDGTPFQGLQRQKHGPSVQQSIEEALHRITGEDATLHSAGRTDTGVHALGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
HVD+E+ D + A+N L+ + I + V D+HARF
Sbjct: 61 RSHVDLEKDI-----------DPFRLSEALNAHLRPD-PIAILACEVVDEDWHARFSCVG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y+I + PL++ K+RAW V +LD AM A + LVG HDF++FR+ CQA P
Sbjct: 109 RRYVYKIANRRAPLTL-AKNRAWQVAHDLDHEAMHRAAQALVGRHDFTTFRSVHCQAKDP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD+L+V V G + + A
Sbjct: 168 VKTLDQLNVERV------------------------------GDEI----------HIHA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG LK VG G V L AK + AP GL FV+
Sbjct: 188 AARSFLHHQVRSMVGCLKLVGAGSWREEQVAEALAAKDRSKLGLNAPPQGLY--FVEATY 245
Query: 357 PE 358
P+
Sbjct: 246 PD 247
>gi|326388515|ref|ZP_08210109.1| tRNA pseudouridine synthase A [Novosphingobium nitrogenifigens DSM
19370]
gi|326206980|gb|EGD57803.1| tRNA pseudouridine synthase A [Novosphingobium nitrogenifigens DSM
19370]
Length = 261
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 139/298 (46%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +E+ GT F G Q+Q + +V +EEA IG+ + + + RTD GVHA
Sbjct: 1 MTRFALTLEWDGTPFMGFQRQAHGPSVQQAVEEATQSVIGEEIVLHAAGRTDTGVHARGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H+++ R D + A+N L+ I V D V D+HARF
Sbjct: 61 RAHLELSR-----------DFDPFRLGEAINARLKPH-PIAVLDCVRVADDWHARFSCIG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ E RAW VT LD AM EA +VLVG HDF++FR+ CQA SP
Sbjct: 109 RAYEYRIINRRAPLTL-EAGRAWRVTRPLDAEAMHEAAQVLVGHHDFTTFRSVHCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V V G V + A
Sbjct: 168 LKTLDRLDVRRV------------------------------GDEVL----------IAA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L VG G+ D+ L+AK AP GL +Y
Sbjct: 188 AARSFLHHQVRSMVGCLALVGLGQWNRDDMAAALEAKNRCKLGLNAPPEGLYFISAQY 245
>gi|444519368|gb|ELV12788.1| tRNA pseudouridine synthase-like 1 [Tupaia chinensis]
Length = 299
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 153/312 (49%), Gaps = 64/312 (20%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---------LEEAFHKFIGQ-PVSISLSSRTD 108
RYL+ +Y+GT F+G + VGV L+EA + PV ++SSRTD
Sbjct: 13 RYLVYFQYLGTDFNGVAAVRGTQRAVGVQNYLEVVLSLQEAAERLNSVVPVKFTISSRTD 72
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVHA SN H+DV+R S + PP V+ A+N L+ I V VP+DF
Sbjct: 73 AGVHALSNAAHLDVQRRSGQ------PPFSPEVLVEALNTHLRHPA-IRVLQAFRVPNDF 125
Query: 169 HARFRAQERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFS 224
HAR+ A RTY YR+ +G P+ L VFE++ W + + LD+ AMQEA + L+G HDFS
Sbjct: 126 HARYAATSRTYLYRLATGCPRPDQLPVFERNLCWALQADCLDVTAMQEAAQYLLGTHDFS 185
Query: 225 SFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFG 284
+F+++G + S +RTL L VS SP + ++S L
Sbjct: 186 AFQSAGSPSTSSVRTLRRLTVSS----------GPTSPFVLPQESSYGL----------- 224
Query: 285 IRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMA 342
QVR + VL AVG G LT + V+ IL+++ + +A
Sbjct: 225 --------------------QVRRMTAVLVAVGLGALTPTQVKVILESQDPLGKHQTRVA 264
Query: 343 PACGLSLGFVKY 354
PA GL L V Y
Sbjct: 265 PARGLFLKSVLY 276
>gi|359401428|ref|ZP_09194396.1| tRNA pseudouridine synthase A [Novosphingobium pentaromativorans
US6-1]
gi|357597103|gb|EHJ58853.1| tRNA pseudouridine synthase A [Novosphingobium pentaromativorans
US6-1]
Length = 248
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 140/291 (48%), Gaps = 53/291 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +E+ G+ F G Q+Q + +V +E+A H G+ + + RTDAGVHA +
Sbjct: 1 MTRYALTLEFDGSPFMGLQRQAHGPSVQQSVEDAVHAITGETAIMHAAGRTDAGVHALAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
HV++E+ P + A+N L+ + I V VP D+HARF
Sbjct: 61 RAHVEIEK-----------PFTPFRLMEAINAKLRPD-PIAVIACEEVPDDWHARFSCIG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ E+ +AW V + LD +AM A + LVG HDF++FR++ CQA SP
Sbjct: 109 RAYIYRIVNRRAPLTL-ERGKAWQVAKPLDAQAMHRAAQFLVGRHDFTTFRSAHCQAQSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V R++ + A
Sbjct: 168 LKTLDRLDV----------------------------------------RREGEHVLIEA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
ARSFL+HQVR +VG L VG G V L+A+ A AP GL
Sbjct: 188 EARSFLHHQVRSMVGCLAMVGMGRWREEQVREALEARDRQALGLNAPPDGL 238
>gi|300691102|ref|YP_003752097.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum PSI07]
gi|299078162|emb|CBJ50805.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum PSI07]
gi|344170931|emb|CCA83373.1| tRNA pseudouridylate synthase I [blood disease bacterium R229]
Length = 274
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 145/302 (48%), Gaps = 58/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G FSG Q Q + TV VLE A +F G + ++ RTDAGVHA
Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFAGVELPTIVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D + + R P + R N FL + V + VP DFHARF A
Sbjct: 61 VVHLDTDLV--RDPFSWV---------RGTNAFLPPT--VAVRWAQEVPEDFHARFSAHR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
RTY+Y ++SGP + +A +V E LD+ AMQEA +VLVG HDFSSFRA+ CQ
Sbjct: 108 RTYYYALVSGPTRAPLL-GGKAGYVMLPPGESLDVAAMQEAAQVLVGEHDFSSFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T ++S+ + G VF
Sbjct: 167 AKSPVKT-------------MYSAEARGQ-----------------GEWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V R +FL+H VR I+G L A+G G+ V+ + +L A+ A+P GL L V
Sbjct: 188 -VRIRGSAFLHHMVRNIMGCLVAIGRGKRPVAWMGEVLAARDRKVAAPTFMPDGLYLAEV 246
Query: 353 KY 354
Y
Sbjct: 247 GY 248
>gi|189183835|ref|YP_001937620.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Ikeda]
gi|238692245|sp|B3CSN9.1|TRUA_ORITI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189180606|dbj|BAG40386.1| pseudouridylate synthase I [Orientia tsutsugamushi str. Ikeda]
Length = 283
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 152/323 (47%), Gaps = 69/323 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY VEY GT F G Q+Q N ++ +LE+ F Q V++ + RTDAGVHA V
Sbjct: 3 RYKAIVEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQVV 62
Query: 119 HVDV------------------ERISKRKPG-------EVLP-PHDSSVVRRAVNHFLQS 152
H D+ + +SK+ ++LP +++ + AVN+ L+
Sbjct: 63 HFDLISPNNSKDLACINKETDNKEVSKQNNTTTTIDSLKMLPCRYNAYKLMSAVNYLLKP 122
Query: 153 EGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQE 212
I++T FHARF A+ R Y YRI++ P SV E++R W + L++ M +
Sbjct: 123 H-RIILTSCEITTLQFHARFSAKARHYKYRIINRAVP-SVIEQNRTWWIKTPLNVIDMID 180
Query: 213 ACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSK 272
A + L+G HDF+SFR+S CQA SP++TL ++ V
Sbjct: 181 ASQHLIGKHDFTSFRSSACQAKSPLKTLTKIEVDTT------------------------ 216
Query: 273 LGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKA 332
+ ++ A SFL+H VR IVG L +G +++ + ++ IL A
Sbjct: 217 ---------------NYPEIQIYFSAPSFLHHMVRNIVGTLVYIGLCKISPAAIKTILFA 261
Query: 333 KTVTAASPMAPACGLSLGFVKYD 355
K A P AP+ GL FVK D
Sbjct: 262 KNRAMAGPTAPSSGLY--FVKVD 282
>gi|431922647|gb|ELK19567.1| tRNA pseudouridine synthase-like 1 [Pteropus alecto]
Length = 427
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 142/268 (52%), Gaps = 40/268 (14%)
Query: 98 PVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIM 157
PV +SSRTDAGVHA SN H+DV+R S + PP V+ +A+N L+ I
Sbjct: 108 PVKFIISSRTDAGVHALSNAAHLDVQRRSGQ------PPFSPEVLTQALNTHLRHPA-IR 160
Query: 158 VTDVRCVPSDFHARFRAQERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEA 213
V VPSDFHAR+ A RTY YR+ +G P LSVFE++R W + + LD+ AMQEA
Sbjct: 161 VLQAFRVPSDFHARYAATSRTYLYRLATGCPGPSQLSVFERNRCWALRADCLDVAAMQEA 220
Query: 214 CKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKL 273
+ L+G HDF +F+++G + S +RTL VS D +S
Sbjct: 221 AQHLLGTHDFRAFQSAGSPSTSSVRTLRRASVSP--------------------DPASPF 260
Query: 274 GMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK 333
+P ++ + + + ++SFLY QVR + +L AVG G LT + V+ IL+++
Sbjct: 261 VLPQES-------RRLQFWTLEFESQSFLYRQVRRMTAILVAVGLGALTPTQVKVILESR 313
Query: 334 TVTA--ASPMAPACGLSLGFVKYDLPED 359
+ +APA GL L V Y ED
Sbjct: 314 DPLGRHQTRVAPAHGLFLKSVLYRDLED 341
>gi|330813516|ref|YP_004357755.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486611|gb|AEA81016.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter sp.
IMCC9063]
Length = 245
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 146/293 (49%), Gaps = 53/293 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++RY VEY GT F G Q+Q N +V +E++ + + I S RTD GVHA
Sbjct: 1 MRRYKCIVEYDGTSFVGWQRQTNGYSVQEAVEKSLKSITQEKIRIHGSGRTDTGVHAKGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D D + A+NH+L+ E I + V +F AR A
Sbjct: 61 VIHFDSN-----------TNLDEYTITSALNHYLKKEL-ISILSTEIVDDNFDARRSAIL 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y I++ PL++ +K++AWH+++ L+ + + A K+ G HDF++FRA+ C+A+SP
Sbjct: 109 RTYEYLIINRAAPLAI-DKNKAWHISKPLNEKLIFAAIKIFEGTHDFTTFRAASCEASSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IRT++ T F+ ++ +L +
Sbjct: 168 IRTIE--------YTEAFA---RNEEIL-----------------------------ITF 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
+++SFL HQVR ++G LK +G + ++ D++ L +K + + +APACGL L
Sbjct: 188 QSKSFLQHQVRSMIGALKLIGEEKWSIRDLQSALDSKDRSRCAALAPACGLYL 240
>gi|351697498|gb|EHB00417.1| tRNA pseudouridine synthase-like 1 [Heterocephalus glaber]
Length = 272
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 149/293 (50%), Gaps = 43/293 (14%)
Query: 72 SGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAASNVCHVDVERISK 127
SG + VGV LEEA + +P+ +LSSRTDAGVHA SN H+DV+R
Sbjct: 5 SGVAAVRGAQRAVGVQNYLEEAAERLNSLEPIRFTLSSRTDAGVHALSNAAHLDVQRRQG 64
Query: 128 RKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSG- 186
+ PP ++ + +N L+ I V VPSDFHAR+ A RTY YR++ G
Sbjct: 65 K------PPFSPEILTKVLNTHLRHPA-IRVLQAFRVPSDFHARYAATSRTYLYRLVMGC 117
Query: 187 --PEPLSVFEKDRAWHV-TEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDEL 243
P L VFE++ W + LD+ AMQ A + L+G HDFS+F+++G S IRTL +
Sbjct: 118 DWPHQLPVFERNLCWALPANHLDVAAMQVAAQHLLGTHDFSAFQSTGSPTPSSIRTLRHI 177
Query: 244 HVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLY 303
VS ++ SP++ S S +L + + ++SFLY
Sbjct: 178 SVSPGLA----------SPLVPSSQESRRLQF----------------WNLEFESQSFLY 211
Query: 304 HQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLSLGFVKY 354
QVR + VL AVG G L + V+ IL+++ + +APA GL L V Y
Sbjct: 212 RQVRRMTAVLVAVGLGALKPAQVKEILESRDPLGKHQARVAPAQGLFLKSVIY 264
>gi|148259428|ref|YP_001233555.1| tRNA pseudouridine synthase A [Acidiphilium cryptum JF-5]
gi|326402654|ref|YP_004282735.1| tRNA pseudouridine synthase A [Acidiphilium multivorum AIU301]
gi|338980958|ref|ZP_08632200.1| TruA [Acidiphilium sp. PM]
gi|166228673|sp|A5FVK4.1|TRUA_ACICJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|146401109|gb|ABQ29636.1| tRNA pseudouridine synthase A [Acidiphilium cryptum JF-5]
gi|325049515|dbj|BAJ79853.1| tRNA pseudouridine synthase A [Acidiphilium multivorum AIU301]
gi|338208132|gb|EGO96022.1| TruA [Acidiphilium sp. PM]
Length = 255
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 142/302 (47%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISL-SSRTDAGVHAAS 115
++R+ + +EY G F G Q+Q N +V VLE A + G V S+ + RTDAGVHAA
Sbjct: 1 MRRWALRLEYDGRGFVGWQRQENGLSVQEVLETAASRLCGGDVPDSVVAGRTDAGVHAAG 60
Query: 116 NVCHVDV-ERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V +++ +R+ D+ VR A+N ++ ++ + + RF A
Sbjct: 61 QVAALELPDRL------------DARAVREALNFHMKPHAVAVIEAAPAPSAAWSPRFSA 108
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y IL+ WHV LD AM EA + L+G HDF+SFRAS CQAN
Sbjct: 109 IGRAYRYLILN-RSARPALRDGFVWHVKAPLDAPAMHEAAQSLLGRHDFTSFRASSCQAN 167
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP+RTLD L V R+ + +
Sbjct: 168 SPLRTLDRLDV----------------------------------------RRDGETVVI 187
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A ARSFL+HQVR +VG LK VG G V V L A+ +AA P AP GL L V+Y
Sbjct: 188 EAEARSFLHHQVRNMVGTLKLVGEGRWRVGRVAEALAARDRSAAGPTAPPDGLVLVAVRY 247
Query: 355 DL 356
++
Sbjct: 248 EV 249
>gi|148284891|ref|YP_001248981.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Boryong]
gi|166228742|sp|A5CET3.1|TRUA_ORITB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|146740330|emb|CAM80738.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Boryong]
Length = 284
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 152/324 (46%), Gaps = 70/324 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY VEY GT F G Q+Q N ++ +LE+ F Q V++ + RTDAGVHA V
Sbjct: 3 RYKAIVEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQVV 62
Query: 119 HVDV------------------ERISKRKPG--------EVLP-PHDSSVVRRAVNHFLQ 151
H D+ + +SK+ ++LP +++ + AVN+ L+
Sbjct: 63 HFDLIAPNNSKDLACINKETDNKEVSKQNNTTTTIDSLKKMLPCRYNAYKLMSAVNYLLK 122
Query: 152 SEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQ 211
I++T FHARF A+ R Y YRI++ P SV E++R W + L++ M
Sbjct: 123 PH-RIILTSCEITTLQFHARFSAKARHYKYRIINRTVP-SVIEQNRTWWIKPPLNVIDMI 180
Query: 212 EACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSS 271
+A + L+G HDF+SFR+S CQA SP++TL ++ V
Sbjct: 181 DASQHLIGKHDFTSFRSSACQAKSPLKTLTKIEVDTT----------------------- 217
Query: 272 KLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILK 331
+ ++ A SFL+H VR IVG L +G +++ + ++ IL
Sbjct: 218 ----------------NYPEIQIYFSAPSFLHHMVRNIVGTLVYIGLCKISPAAIKTILF 261
Query: 332 AKTVTAASPMAPACGLSLGFVKYD 355
AK A P AP+ GL FVK D
Sbjct: 262 AKNRAMAGPTAPSSGLY--FVKVD 283
>gi|374307823|ref|YP_005054254.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896]
gi|291166165|gb|EFE28211.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896]
Length = 244
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 152/299 (50%), Gaps = 58/299 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
Q L+ ++YIGT + G QKQ N +++ +E A + G+ V+++ S RTD+GVHA V
Sbjct: 3 QNILLKIQYIGTNYCGWQKQNNGKSIQQEIERAICEVTGKQVNLTGSGRTDSGVHALGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
+ ++ +P ++ A+N++L DI + + + V FHAR+ ++++
Sbjct: 63 ANFVIDT--------TIPVEK---IKYAINYYLPD--DIRIIESKAVEDSFHARYSSKKK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY YRI + E S FEK+R++ V +ELDL M+E K L+G HDF++F++ G + +
Sbjct: 110 TYCYRI-NMNEIESPFEKNRSYFVGKELDLSKMKEQSKFLMGEHDFAAFQSEGSSVKTTV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ L + + I+N +++ + G
Sbjct: 169 RTIYSLEI-------------------NCINNIAEIHIIGNG------------------ 191
Query: 298 ARSFLYHQVRLIVGVLKAVGTG-ELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY+ VR+I G L +G G + ++ D IL K A P APACGL + V+YD
Sbjct: 192 ---FLYNMVRIIAGTLIEIGKGKDYSIVD---ILNTKQRENAGPTAPACGLFMEKVEYD 244
>gi|330993399|ref|ZP_08317334.1| tRNA pseudouridine synthase A [Gluconacetobacter sp. SXCC-1]
gi|329759429|gb|EGG75938.1| tRNA pseudouridine synthase A [Gluconacetobacter sp. SXCC-1]
Length = 275
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 141/301 (46%), Gaps = 58/301 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQ--LNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
R+ + +EY G F G Q+Q ++ G+LE+A + G V + RTDAGVHA+
Sbjct: 21 RWAVLMEYDGRGFVGWQRQKTTGLLSIQGLLEDAATRLTNGHDVRSITAGRTDAGVHASG 80
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P +V S+ VR +N +++ ++V R V ++ARF A
Sbjct: 81 QVAHLDF-------PADVT--LSSATVRDGLNFYMKPH-PVVVLMARPVLPQWNARFSAI 130
Query: 176 ERTYFYRILS-GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y YRIL+ P E + WHV LD+ M++A L+G HDF+SFRA+ CQA
Sbjct: 131 SRAYRYRILNRAARP--ALEDGQVWHVRAPLDVDGMRQAAAHLLGRHDFTSFRATACQAR 188
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP+RTLD L V K+ Y V
Sbjct: 189 SPVRTLDRLDV-----------------------------------------KREGEYVV 207
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
I A ARSFL+HQVR + G LK VG G + V L A AA P AP GL L V
Sbjct: 208 IEAAARSFLHHQVRNMAGTLKLVGEGRWEPAQVAHALAACDRRAAGPTAPPEGLCLTGVG 267
Query: 354 Y 354
Y
Sbjct: 268 Y 268
>gi|441671685|ref|XP_003279774.2| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase-like 1,
partial [Nomascus leucogenys]
Length = 280
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 149/281 (53%), Gaps = 45/281 (16%)
Query: 84 VGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDS 139
VGV LEEA + +PV ++SSRTDAGVHA SN H+DV+R S R PP
Sbjct: 16 VGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGR------PPFPP 69
Query: 140 SVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSG---PEPLSVFEKD 196
V+ A+N L+ I V VP+DFHAR A RTY YR+ +G + L VFE++
Sbjct: 70 EVLTEALNTHLRHPA-IRVLRAFRVPNDFHARHAATSRTYLYRLATGCNRRDELPVFERN 128
Query: 197 RAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFS 255
W + + LD+ AMQEA + L+G HDFS+F+++G SP+RTL + VS
Sbjct: 129 LCWALPADCLDVVAMQEAAQHLLGTHDFSAFQSTGSPVPSPVRTLRRVSVSP-------- 180
Query: 256 SINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKA 315
Q SP+++ S KL R + + ++SFLY QVR + VL A
Sbjct: 181 --GQASPLVT--QESRKL----------------RFWSLEFESQSFLYRQVRRMTAVLVA 220
Query: 316 VGTGELTVSDVERILKAKTVTAA--SPMAPACGLSLGFVKY 354
VG G L + V+ IL+++ + +APA GL L V Y
Sbjct: 221 VGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 261
>gi|309809150|ref|ZP_07703023.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 2503V10-D]
gi|308170595|gb|EFO72615.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 2503V10-D]
Length = 260
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 145/304 (47%), Gaps = 55/304 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+QRY + + Y GT F G QKQ N RT+ GV+E+A K G+ V + S RTDAGVHA
Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D PG V+P + + A+N + DI+ D V DFH ++ +
Sbjct: 61 QVIHFDY-------PGNVIPAKNMLL---ALNALMPR--DIIFLDSELVNDDFHVQYSTK 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y Y I++ F ++ H +LD+ M++A L+G HDF+SF ASG Q
Sbjct: 109 AKWYRY-IINQSRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVD 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ +++ + N D VL I +
Sbjct: 168 KVRTIFYINLEQ----------NGDEIVLDVIGD-------------------------- 191
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY- 354
FLY+ VR+I G+L +G G+ V DVE+I+ AK A APA GL L V Y
Sbjct: 192 ----GFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQQARNTAPASGLYLYHVFYD 247
Query: 355 DLPE 358
DLP+
Sbjct: 248 DLPK 251
>gi|259500923|ref|ZP_05743825.1| tRNA pseudouridine synthase A [Lactobacillus iners DSM 13335]
gi|302190624|ref|ZP_07266878.1| tRNA pseudouridine synthase A [Lactobacillus iners AB-1]
gi|309803645|ref|ZP_07697735.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 11V1-d]
gi|309804945|ref|ZP_07699003.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 09V1-c]
gi|309806696|ref|ZP_07700691.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 03V1-b]
gi|309808529|ref|ZP_07702428.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 01V1-a]
gi|312871160|ref|ZP_07731258.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 3008A-a]
gi|312872668|ref|ZP_07732733.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2062A-h1]
gi|315653995|ref|ZP_07906911.1| tRNA pseudouridine synthase A [Lactobacillus iners ATCC 55195]
gi|259167617|gb|EEW52112.1| tRNA pseudouridine synthase A [Lactobacillus iners DSM 13335]
gi|308164243|gb|EFO66500.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 11V1-d]
gi|308165705|gb|EFO67930.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 09V1-c]
gi|308166876|gb|EFO69060.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 03V1-b]
gi|308168357|gb|EFO70476.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 01V1-a]
gi|311091710|gb|EFQ50089.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2062A-h1]
gi|311093174|gb|EFQ51520.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 3008A-a]
gi|315488691|gb|EFU78337.1| tRNA pseudouridine synthase A [Lactobacillus iners ATCC 55195]
Length = 260
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 145/304 (47%), Gaps = 55/304 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+QRY + + Y GT F G QKQ N RT+ GV+E+A K G+ V + S RTDAGVHA
Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D PG V+P + + A+N + DI+ D V DFH ++ +
Sbjct: 61 QVIHFDY-------PGNVIPAKNMLL---ALNALMPR--DIIFLDSELVNDDFHVQYSTK 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y Y I++ F ++ H +LD+ M++A L+G HDF+SF ASG Q
Sbjct: 109 AKWYRY-IINQSRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVD 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ +++ + N D VL I +
Sbjct: 168 KVRTIFYINLEQ----------NGDEIVLDVIGD-------------------------- 191
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY- 354
FLY+ VR+I G+L +G G+ V DVE+I+ AK A APA GL L V Y
Sbjct: 192 ----GFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNTAPASGLYLYHVFYD 247
Query: 355 DLPE 358
DLP+
Sbjct: 248 DLPK 251
>gi|426327418|ref|XP_004024515.1| PREDICTED: tRNA pseudouridine synthase-like 1, partial [Gorilla
gorilla gorilla]
Length = 265
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 149/276 (53%), Gaps = 41/276 (14%)
Query: 86 VLEEAFHKFIG-QPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRR 144
VL+EA + +PV ++SSRTDAGVHA SN H+DV+R S R PP V+
Sbjct: 5 VLQEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGR------PPFPPEVLAE 58
Query: 145 AVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSG---PEPLSVFEKDRAWHV 201
A+N L+ ++ R VPSDFHAR A RTY YR+ +G + L VFE++ W +
Sbjct: 59 ALNTHLRHPAIRVLRAFR-VPSDFHARHAATSRTYLYRLATGCHRRDELPVFERNLCWAL 117
Query: 202 TEE-LDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQD 260
+ LD+ AMQEA + L+G HDFS+F+++G SP+RTL + VS Q
Sbjct: 118 PADCLDVVAMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSP----------GQA 167
Query: 261 SPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGE 320
SP+++ + S KL N +E ++SFLY QVR + VL AVG G
Sbjct: 168 SPLVTP-EESRKLQFCN------------LEFE----SQSFLYRQVRRMTAVLVAVGLGT 210
Query: 321 LTVSDVERILKAKTVTAA--SPMAPACGLSLGFVKY 354
L + V+ IL+++ + +APA GL L V Y
Sbjct: 211 LAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 246
>gi|410943113|ref|ZP_11374854.1| tRNA pseudouridine synthase A [Gluconobacter frateurii NBRC 101659]
Length = 259
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 147/307 (47%), Gaps = 60/307 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
I R+ + +EY GT + G Q+Q + ++ ++E A K +G + VS + RTDAGVHA+
Sbjct: 6 IARWALKIEYNGTNYVGWQRQKDGLSIQTLIEAAASKLVGGRAVSSITAGRTDAGVHASG 65
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P + P + +R + ++L+ ++V V D+ ARF A
Sbjct: 66 MVIHLDF-------PADA--PINDRQIRDGMGYYLKPH-PVVVLQAAPVSLDWSARFSAT 115
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R+Y + IL+ + +++ WHV LD+ MQ+ L+G HDF+SFRA CQA S
Sbjct: 116 WRSYRFTILN-RQARPALQENHVWHVKRPLDVDLMQDGANFLLGTHDFTSFRAIACQAKS 174
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RTLD L K HR +++
Sbjct: 175 AVRTLDVL-------------------------------------------KIHREGDLV 191
Query: 296 ---ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
+ARSFL+HQVR +VG L VG+ + + IL+AK AA P +P GL L V
Sbjct: 192 LVDTQARSFLHHQVRNMVGSLVMVGSRQWPTEKMRDILEAKNRCAAGPTSPPDGLCLTGV 251
Query: 353 KYDLPED 359
Y PED
Sbjct: 252 GY--PED 256
>gi|148653728|ref|YP_001280821.1| tRNA pseudouridine synthase A [Psychrobacter sp. PRwf-1]
gi|148572812|gb|ABQ94871.1| tRNA pseudouridine synthase A [Psychrobacter sp. PRwf-1]
Length = 302
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 140/319 (43%), Gaps = 56/319 (17%)
Query: 43 ETRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSIS 102
ET T + Q Y + VE+ G + G Q+Q V VLEE K +P+ +
Sbjct: 22 ETTTAPSSSTPQHPAQTYALGVEFNGANYRGWQRQQEVLCVQQVLEETLSKIANEPIEVV 81
Query: 103 LSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVR 162
+ RTDAGVH + + H +KR L R N L DI + ++
Sbjct: 82 AAGRTDAGVHGGNMLAHFTTS--AKRGVYNWL---------RGANSLLPD--DIAIRWIQ 128
Query: 163 CVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHD 222
+P FHARF A R Y Y L+ P+ +V H+ E LDL MQ+A + +VG HD
Sbjct: 129 PMPDTFHARFGAIARRYRYITLNQPQRPAVLNH-LVTHIHEPLDLALMQQAAEHIVGTHD 187
Query: 223 FSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNV 282
FSSFRA+ CQ+ P+R + LF +G V
Sbjct: 188 FSSFRAAACQSKQPVRNIHH--------AKLFK---------------------HGEFIV 218
Query: 283 FGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMA 342
F I +A FL+H VR ++G L A+G GEL D RIL+AK T A P A
Sbjct: 219 FDI-----------QADGFLHHMVRNLMGTLFAIGKGELQPEDYLRILQAKDRTIAPPTA 267
Query: 343 PACGLSLGFVKYDLPEDDQ 361
P GL F+ PE Q
Sbjct: 268 PPDGLY--FINAYYPEPMQ 284
>gi|255264700|ref|ZP_05344042.1| tRNA pseudouridine synthase A [Thalassiobium sp. R2A62]
gi|255107035|gb|EET49709.1| tRNA pseudouridine synthase A [Thalassiobium sp. R2A62]
Length = 257
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 148/303 (48%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F+G Q+Q + +V G +E A K + +I+ + RTDAGVH +
Sbjct: 1 MPRYALKIEYDGAPFAGWQRQKDQPSVQGAIEAALAKLEPRAHTIAAAGRTDAGVHGLAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ER + + + A+N+ L+ + + D V D+HARF A E
Sbjct: 61 VAHCDLERGWQ-----------AFRLSEALNYHLKP-APVAIVDCAIVEGDWHARFSAVE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+++ ++ + R WHV LD+ AMQ A LVG HDF++FR+S CQ+ SP
Sbjct: 109 RRYLFRLVARRASMTHL-RGRVWHVQNPLDVAAMQAAAAHLVGLHDFTTFRSSICQSASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L +SE + A G+ Y
Sbjct: 168 VKTLDRLDISEHETNA-------------------------------GV-----EYRFDV 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G V L+A + P++P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSWDPDRVRVALEACERSTCGPVSPPQGLYLAGVGY-- 249
Query: 357 PED 359
P D
Sbjct: 250 PND 252
>gi|354594305|ref|ZP_09012344.1| tRNA pseudouridine synthase A [Commensalibacter intestini A911]
gi|353671981|gb|EHD13681.1| tRNA pseudouridine synthase A [Commensalibacter intestini A911]
Length = 260
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 138/303 (45%), Gaps = 59/303 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSIS--LSSRTDAGVHAA 114
IQR+ + +EY GT G Q+Q +V +LEEA K +S + RTD+GVHA
Sbjct: 6 IQRWAVKIEYDGTGLVGWQRQKEGLSVQQILEEAAEKLCNNNFKVSSITAGRTDSGVHAI 65
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRR---AVNHFLQSEGDIMVTDVRCVPSDFHAR 171
V H+D P H S ++ +NH+++ I + V ++ AR
Sbjct: 66 GQVAHLD------------FPAHMSLTAKKICDGLNHYMKPHA-IAILQAAPVDLEWSAR 112
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
F A +R Y Y IL+ ++ E + WHV + LD+ M A + L+G HDF+S+RA+ C
Sbjct: 113 FTATQRKYKYVILNRSSRPALNE-NYVWHVRKPLDIDKMYRAAQRLLGLHDFTSYRATAC 171
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
QA+SPIR LD F I K+
Sbjct: 172 QAHSPIRELDR----------------------------------------FDIYKEGDL 191
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
I ARSFL+HQVR +VG LK +G G IL+AK AA APA GL L
Sbjct: 192 IYFIPEARSFLHHQVRNMVGTLKMIGDGYWPEEQAYTILQAKDRKAAGIKAPATGLFLTE 251
Query: 352 VKY 354
V Y
Sbjct: 252 VIY 254
>gi|148683104|gb|EDL15051.1| mCG23338, isoform CRA_b [Mus musculus]
Length = 284
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 141/264 (53%), Gaps = 40/264 (15%)
Query: 98 PVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIM 157
PV ++SSRTDAGVHA SN H+D++R +PG+ P VV +A+N L+ I
Sbjct: 21 PVRFTISSRTDAGVHALSNAAHLDIQR----RPGQS--PFSPEVVAKALNTHLKHPA-IR 73
Query: 158 VTDVRCVPSDFHARFRAQERTYFYRILSG---PEPLSVFEKDRAWHV-TEELDLRAMQEA 213
V VP+DFHAR A RTY YR+ +G P L VFE++ W + TE LD+ AMQEA
Sbjct: 74 VLKAFRVPNDFHARHAATSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEA 133
Query: 214 CKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKL 273
+ L+G HDFS+F+++G + +RTL + VS +S
Sbjct: 134 AQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSP--------------------GPASPF 173
Query: 274 GMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK 333
+P G ++ + + + ++SFLY QVR + VL AVG G L + V+ IL+++
Sbjct: 174 VLPEGS-------RRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQ 226
Query: 334 TVTAA--SPMAPACGLSLGFVKYD 355
+ +APA GL L V YD
Sbjct: 227 DPLGKYQARVAPARGLFLKSVLYD 250
>gi|349700013|ref|ZP_08901642.1| tRNA pseudouridine synthase A [Gluconacetobacter europaeus LMG
18494]
Length = 273
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 141/300 (47%), Gaps = 56/300 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQ--LNCRTVVGVLEEAFHKFIGQPVSISLSS-RTDAGVHAAS 115
R+ + +EY G F G Q+Q + ++ G+LE+A V S+++ RTDAGVHA+
Sbjct: 19 RWAVLMEYDGRGFVGWQRQQAAHLTSIQGLLEDAAKNLTAGRVVRSITAGRTDAGVHASG 78
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P +V S+ VR +N +++ ++V R V ++ARF A
Sbjct: 79 QVAHLDF-------PADVT--LSSATVRDGLNFYMKPH-PVVVLMARPVLPHWNARFSAC 128
Query: 176 ERTYFYRILS-GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y YRIL+ P E+ WHV LD M A + LVG HDF+SFRAS CQA
Sbjct: 129 SRAYRYRILNRAARP--ALEEGHVWHVRAPLDADVMHSAAQSLVGRHDFTSFRASACQAR 186
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP+R++D L +R++ +
Sbjct: 187 SPVRSIDRL----------------------------------------AVRREGEHVVI 206
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A ARSFL+HQVR + G LK VG G VE+ L A+ A P AP GL L V Y
Sbjct: 207 EAEARSFLHHQVRNMAGTLKLVGEGRWAPERVEQALAARDRRAGGPTAPPEGLCLTGVGY 266
>gi|84503354|ref|ZP_01001423.1| tRNA pseudouridine synthase A [Oceanicola batsensis HTCC2597]
gi|84388264|gb|EAQ01215.1| tRNA pseudouridine synthase A [Oceanicola batsensis HTCC2597]
Length = 255
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 143/303 (47%), Gaps = 51/303 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F+G Q+Q + +V G +E A + P +I+ + RTDAGVHA +
Sbjct: 1 MPRYALQVEYHGAPFAGWQRQADQPSVQGAIEAALARLEPGPHTIAAAGRTDAGVHATAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D+E+ D + A+NH L+ + + V D+HARF A E
Sbjct: 61 VAQCDLEKDW-----------DPFRLSEALNHHLRP-APVAIRACARVAEDWHARFSALE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L P + + W V LD A++ LVG HDF++FR+ CQA SP
Sbjct: 109 RRYMFRLLMRRAP-ATHDAGLVWQVPHRLDPEAIRAGAAHLVGHHDFTTFRSVICQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDE+ + E D S G F +
Sbjct: 168 VKTLDEIRIEE-------------------HDGFS------GPELRFHL----------- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR IVG L+ VG G S V L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGRWPPSRVAEALEARDRAACGPVCPPQGLYLVGVGY-- 249
Query: 357 PED 359
P+D
Sbjct: 250 PDD 252
>gi|335040764|ref|ZP_08533886.1| tRNA pseudouridine synthase A [Caldalkalibacillus thermarum TA2.A1]
gi|334179339|gb|EGL81982.1| tRNA pseudouridine synthase A [Caldalkalibacillus thermarum TA2.A1]
Length = 287
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 144/301 (47%), Gaps = 24/301 (7%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ ++ V Y GT ++G Q+Q N T+ G LE + PV + S RTDAGVHA
Sbjct: 8 VHKWKCTVAYDGTAYAGFQRQPNAVTIQGELEAVLKRMHRHPVQVVGSGRTDAGVHARGQ 67
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H + + + +A+N Q GDI + VP+ FHAR+ +
Sbjct: 68 VIHFESSLAL-----------EENEWTKALN--AQLPGDIRILRTEKVPASFHARYDVRG 114
Query: 177 RTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ Y Y I + P +P F + ++HV LD+ MQEA ++ G HDF++F ++ +
Sbjct: 115 KEYRYFICNAPVHDP---FVRQYSYHVPLPLDVTLMQEAGRLFEGTHDFTAFSSAKTEVA 171
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLS-SIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+D+L + EV+ + Q P + P G G + +
Sbjct: 172 DKVRTIDKLTL-EVLPVGRGTQAEQAKPGFDREVVWPGWAHCPTAG----GKPRAGQMIT 226
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
VI R FLYH VR+IVG L VG G+ + +DVER LK K A P AP GL L V
Sbjct: 227 VICRGTGFLYHMVRIIVGTLIEVGKGKKSPADVERALKVKDRNLAGPTAPPEGLFLWRVF 286
Query: 354 Y 354
Y
Sbjct: 287 Y 287
>gi|71083164|ref|YP_265883.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique
HTCC1062]
gi|123734383|sp|Q4FNF9.1|TRUA_PELUB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|71062277|gb|AAZ21280.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique
HTCC1062]
Length = 246
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 142/299 (47%), Gaps = 58/299 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EYIGT F G Q Q +++ ++ KF+ + V + S RTDAGVHA
Sbjct: 3 RYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQSA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D ++ + + +++NHF+ +G I V ++ FHAR A++R
Sbjct: 63 HFDCKK----------EIQNLDKLLKSINHFINDKG-ISVLAIKKRSLKFHARHSAKQRI 111
Query: 179 YFYRI---LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
Y Y I LS P EK+R WH+ ++LD+ M++ K L+G DFS+FRAS C A S
Sbjct: 112 YKYIIFNRLSKPS----LEKERGWHIIKKLDIELMKKGSKKLLGTKDFSTFRASSCNAKS 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PI+T+ S+N I+ K E+
Sbjct: 168 PIKTMK--------------SVN--------------------------IKSKDGRIEIQ 187
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+++SFL QVR +VG LK + + + E ++K+K +P APA GL L V Y
Sbjct: 188 FKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEGLFLEKVIY 246
>gi|121534665|ref|ZP_01666486.1| tRNA pseudouridine synthase A [Thermosinus carboxydivorans Nor1]
gi|121306685|gb|EAX47606.1| tRNA pseudouridine synthase A [Thermosinus carboxydivorans Nor1]
Length = 250
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 135/309 (43%), Gaps = 77/309 (24%)
Query: 58 QRYL-IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
QRYL + V Y GT + G Q+Q N TV VLEE G P+ ++ ++RTDAGVHA
Sbjct: 7 QRYLKLTVAYDGTAYHGFQRQANAITVQQVLEERLATIFGHPLKVTGAARTDAGVHAYGQ 66
Query: 117 VCH---------VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSD 167
V ++ R +K VLPP DI+V V +D
Sbjct: 67 VVGFATSGTIPAANIVRAAK----SVLPP------------------DIVVVKAEEVSAD 104
Query: 168 FHARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSS 225
FHARF A+ + Y YRI + +P F ++ AWHVT+ LD AM A + +VG HDFS+
Sbjct: 105 FHARFSARSKIYLYRIYNAAVADP---FRRNYAWHVTQPLDEAAMDTAVQTVVGTHDFSA 161
Query: 226 FRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGI 285
FRA+G SP+RT+ E G
Sbjct: 162 FRAAGGPPVSPVRTIYEA----------------------------------------GC 181
Query: 286 RKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPAC 345
++ E FLYH VR +VG L VG G LT RIL + T A AP
Sbjct: 182 TREGDMLEFRFWGNGFLYHMVRNLVGTLVDVGLGRLTRDGFTRILAGRDRTRAGITAPPQ 241
Query: 346 GLSLGFVKY 354
GL L + Y
Sbjct: 242 GLYLKEIFY 250
>gi|335043092|ref|ZP_08536119.1| pseudouridylate synthase [Methylophaga aminisulfidivorans MP]
gi|333789706|gb|EGL55588.1| pseudouridylate synthase [Methylophaga aminisulfidivorans MP]
Length = 259
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 140/296 (47%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT F G Q Q + RTV G L++A PV + + RTD GVH + V
Sbjct: 2 RIALGIEYAGTDFCGWQIQSHSRTVQGELQKAVSIVANHPVEVYAAGRTDTGVHGLNQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + + + K G +L +N L D+ VT V+ V DF+ARF A +R+
Sbjct: 62 HFDTDSV-REKRGWLL----------GINANLPK--DVNVTWVQFVDDDFNARFSAIKRS 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y IL+ S+ + WH L++ MQ A L+G HDFS+FRAS CQA SPI+
Sbjct: 109 YRYLILNRLSRSSIHQNRMWWHY-PPLNIEKMQAAADQLIGRHDFSAFRASECQAKSPIK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD++ VS+ QD + A
Sbjct: 168 TLDKIQVSQ----------QQDCIAID------------------------------VEA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
SFL+H VR +VGV+ A+G G V ++L++ + APA GL L V+Y
Sbjct: 188 LSFLHHMVRNLVGVMAAIGDGSKPVEWAGQVLRSVDRSQGGITAPAEGLYLVDVRY 243
>gi|345864730|ref|ZP_08816927.1| tRNA pseudouridine synthase A [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345124114|gb|EGW53997.1| tRNA pseudouridine synthase A [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 253
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 136/303 (44%), Gaps = 62/303 (20%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ VEY G+ F+G QKQ + R+V LE A + QPV + + RTD GVH V H
Sbjct: 5 LGVEYDGSGFNGWQKQSHARSVQEDLEAALSRVADQPVRVHCAGRTDTGVHGTGQVVHF- 63
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
E ++R P + V+ VN D+ V+ R V DFHARF A R Y Y
Sbjct: 64 -ETTAERPP-------RAWVLGSNVN----LPNDVSVSWARQVADDFHARFSATGRHYRY 111
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
IL+ +++ WH LD M +A + LVG HDFSS+RA GCQA P+RT+
Sbjct: 112 LILNRGTRSALWRNRATWH-HHPLDEHRMHQAAQALVGTHDFSSYRALGCQAKHPVRTIH 170
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA---RA 298
L VS R E+IA A
Sbjct: 171 RLDVS-------------------------------------------RQGEMIAIEVHA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPE 358
+FL+H VR + GVL A+G G+ VS E IL+ + AP GL L K D PE
Sbjct: 188 NAFLHHMVRNLAGVLMAIGQGKQEVSWAEEILQLRDRRKGGVTAPPHGLYL--TKVDYPE 245
Query: 359 DDQ 361
+ Q
Sbjct: 246 EFQ 248
>gi|365856493|ref|ZP_09396510.1| tRNA pseudouridine synthase A [Acetobacteraceae bacterium AT-5844]
gi|363718029|gb|EHM01385.1| tRNA pseudouridine synthase A [Acetobacteraceae bacterium AT-5844]
Length = 253
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 144/304 (47%), Gaps = 58/304 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG--QPVSISLSSRTDAGVHAA 114
+ RY + VEY G F G Q+Q N +V VLEEA G P +++ S RTDAGVHA
Sbjct: 1 MPRYALLVEYDGAPFVGWQRQTNGLSVQQVLEEAGAPLNGGETPETVA-SGRTDAGVHAE 59
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V ++++ LPP +R A+N + V V P D+ ARF A
Sbjct: 60 GQVVQIELKLD--------LPPER---LREALN-VRSRPHPVSVVSVARAPEDWSARFSA 107
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y YRIL+ E R WHV ++LD AM EA ++L+G HDFS++RA+ CQA
Sbjct: 108 CGRAYRYRILNR-RARPALEAGRVWHVPQKLDAAAMHEAAQMLLGRHDFSAYRAATCQAK 166
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+RTLD+L VS + G V +
Sbjct: 167 HAMRTLDQLDVSRL------------------------------GDEV----------HI 186
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L VG G V+ +IL T A APA GL+ F++
Sbjct: 187 HTAARSFLHHQVRNMVGTLVEVGLGRKAVTWPRQILDGADRTRAGQTAPADGLT--FLRA 244
Query: 355 DLPE 358
+ PE
Sbjct: 245 EYPE 248
>gi|329849464|ref|ZP_08264310.1| tRNA pseudouridine synthase A [Asticcacaulis biprosthecum C19]
gi|328841375|gb|EGF90945.1| tRNA pseudouridine synthase A [Asticcacaulis biprosthecum C19]
Length = 257
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 134/306 (43%), Gaps = 53/306 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY +EY G + G Q Q + TV LE A F G+ + I+ + RTD GVHA
Sbjct: 1 MPRYRCLIEYDGRPYKGFQAQGDHPTVQASLERAILGFSGEALRITAAGRTDTGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D+ + K + VR A+N FL E + V V +F ARF A
Sbjct: 61 VVSFDLSKAFK-----------ADTVRDAMNAFLARE-PVSVLAAEQVDDEFSARFSATG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P ++ + R WHV + LD M +A K LVG HDF++FR CQA SP
Sbjct: 109 RMYLYRILTRRAPPAL-DMGRVWHVKKPLDAEVMAQAAKALVGTHDFTTFRHVECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD V FG ++
Sbjct: 168 VKTLDIARVKR-----------------------------------FG-----DEIHLVF 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+ QVR + G L G G ++DV L AK A +AP GL L V Y+
Sbjct: 188 AARSFLHRQVRSMTGTLVEAGIGRWDIADVAEALAAKDRAACGQVAPPEGLYLTHVTYEA 247
Query: 357 PEDDQT 362
D T
Sbjct: 248 EPDFGT 253
>gi|118101049|ref|XP_417580.2| PREDICTED: pseudouridylate synthase-like 1 [Gallus gallus]
Length = 291
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 158/309 (51%), Gaps = 47/309 (15%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQ-PVSISLSSRTDAGVHAA 114
RYL+ +Y GT++SG + ++ +GV LE+A P+ +SSRTD+GVHA
Sbjct: 7 RYLVFFQYWGTKYSGVMQTSAEQSGIGVQNYLEKAAQNLKPVVPIKFHISSRTDSGVHAL 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
N H+D++R PG+ P V+ +NH L+ E +++ R V ++FHARF A
Sbjct: 67 CNSAHLDIQR----APGK--PAFQERVLIGCLNHHLKPEPIRILSAYR-VTNNFHARFSA 119
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTE-ELDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+L G + VFE+D W L++ AMQ+A + L+G HDFS+F
Sbjct: 120 LSRTYIYRLLMGCTHHSEIPVFERDLCWAPPGGYLNVPAMQDAAQFLLGTHDFSTF---- 175
Query: 231 CQANS--PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
C NS P R+ V T L + I S LS L
Sbjct: 176 CSLNSETPFRS--------PVKTILQADIQPSSGFLSHHYEYRGL--------------- 212
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA--ASPMAPACG 346
+ +E+ ++RSFLY QVR +VG L AVG G+L ++ +L+ K A A MAP+ G
Sbjct: 213 -QFWELKFKSRSFLYRQVRRMVGALVAVGQGKLAPHHIKELLEMKDARAFPAFAMAPSSG 271
Query: 347 LSLGFVKYD 355
L L V+Y+
Sbjct: 272 LFLKSVEYN 280
>gi|328875656|gb|EGG24020.1| hypothetical protein DFA_06158 [Dictyostelium fasciculatum]
Length = 403
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 143/285 (50%), Gaps = 37/285 (12%)
Query: 79 NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPG----EVL 134
N R++ +E + Q + I SSRTD+GV++ V H D+ K G E L
Sbjct: 82 NGRSIQYAIEHGLSHIMRQRIQIVGSSRTDSGVNSLCQVAHCDLPNQRYDKKGTIEQEQL 141
Query: 135 PPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSV- 192
P S+++ A+N L+ DI + V V ++FH+R+ A RTY Y+I++G P V
Sbjct: 142 TP---SIIKIALNQQLKRHNHDIRIVSVEKVDNEFHSRYNATSRTYLYKIMTGVRPTEVP 198
Query: 193 FE-KDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVST 251
E K++ W + E LD+ M+E L G HDF S R++ CQA SPIR++ + + ++
Sbjct: 199 LELKNKVWPIWETLDIDQMKETASFLQGLHDFDSLRSAKCQAKSPIRSISHIKIIDLPLP 258
Query: 252 ALFSSINQDS--PVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLI 309
++ N DS P + I G + G RSFL++QVR++
Sbjct: 259 DIWRYNNDDSTPPKIQYI-----------GLEIKG--------------RSFLHNQVRIM 293
Query: 310 VGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
L +G G +T+ +++ I+K + T A APA L+L V Y
Sbjct: 294 SSCLAEIGRGHMTLDNLKEIMKGRDRTLAPATAPAYPLTLVKVSY 338
>gi|115522681|ref|YP_779592.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisA53]
gi|122297686|sp|Q07TX2.1|TRUA_RHOP5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|115516628|gb|ABJ04612.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisA53]
Length = 246
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 146/299 (48%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY GT + G Q Q N ++ G LE+A G+ + + + RTDAGVHA +
Sbjct: 1 MPRYKLIIEYDGTPYCGWQIQENGPSIQGALEDAAKAICGEAIRVRGAGRTDAGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H DV + LPP +R A+N L+ + I V VP DF ARF A +
Sbjct: 61 VAHCDVPK--------QLPP---GRLRDALNAHLRPQ-PIGVITAEIVPDDFEARFSAIK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + L+ +RAW V LD AM EA + L+G HDF++FR + CQA SP
Sbjct: 109 RHYVYRISNRRANLA-LAINRAWRVPRRLDSDAMHEAAQRLIGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V I + ++ ++
Sbjct: 168 DKTLDQLDV---------------------IRDGDEI-------------------RIVT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+ QVR +VG L VG G + D+ L A++ +A P+AP GL L V Y+
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARSRSACGPVAPPDGLYLVKVDYE 246
>gi|377556458|ref|ZP_09786163.1| tRNA pseudouridine synthase A [Lactobacillus gastricus PS3]
gi|376168386|gb|EHS87160.1| tRNA pseudouridine synthase A [Lactobacillus gastricus PS3]
Length = 260
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 144/303 (47%), Gaps = 59/303 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y G FSG Q Q + RTV L+ A +K P + + S RTDAGVHA
Sbjct: 1 MYRYKITFAYDGAGFSGFQIQPHKRTVEQTLKTAVNKIAKNPDPPLHVIGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
+ V H D+ L P +S +R+A+N L DI+V VP+DFHAR+
Sbjct: 61 LNQVAHFDMP---------YLIPDES--MRKALNSILPL--DILVKKAERVPNDFHARYD 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+ Y YR+ G E ++ F++ H LDL MQ A + L+G HDF+SF ASG QA
Sbjct: 108 THSKRYRYRVDQG-EFVNPFKRLYTAHYKYPLDLAKMQRAAQDLLGEHDFTSFVASGSQA 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +R +D++ V ++ ++E
Sbjct: 167 QSNVRRIDDVLV----------------------------------------KRDEINHE 186
Query: 294 VI--ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
VI FLY+QVR++V +L +G G+ V D+ R+L AK AA APA GL L
Sbjct: 187 VIFEFEGNGFLYNQVRIMVALLLEIGNGQRPVDDIPRVLAAKDRQAARMTAPATGLYLVR 246
Query: 352 VKY 354
V Y
Sbjct: 247 VNY 249
>gi|393724793|ref|ZP_10344720.1| tRNA pseudouridine synthase A [Sphingomonas sp. PAMC 26605]
Length = 246
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 143/301 (47%), Gaps = 55/301 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G F G Q+Q N +V +E A H G+ V++ + RTDAGVHA
Sbjct: 1 MTRFALTVEYDGRPFVGWQRQDNGASVQASIERAVHAVTGETVAVQAAGRTDAGVHALGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
HVDV R E+ P + A+N ++ + + + VP D+HARF
Sbjct: 61 RAHVDVAR-------EITPFR----LMEALNALVRPD-PVAIVACEVVPDDWHARFSCIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RI++ PL+V E+ AW V LD AM LVG HDF++FRA+ CQA+SP
Sbjct: 109 RHYEFRIVTRRAPLTV-ERGLAWRVPAPLDAAAMAAGAAHLVGRHDFTTFRAAQCQADSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L V + + ++ V A
Sbjct: 168 VRTLDRLDV---------------------VADGDRI-------------------SVFA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G+ + D+ L A T AP GL F++ D
Sbjct: 188 SARSFLHHQVRSMVGSLSLVGLGKWSPDDMAAALAACDRTRLGLNAPPDGLY--FLRADY 245
Query: 357 P 357
P
Sbjct: 246 P 246
>gi|95928687|ref|ZP_01311433.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684]
gi|95135032|gb|EAT16685.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684]
Length = 251
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 136/297 (45%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + VEY GT + G Q Q N +TV +E A + IG V + S RTDAGVHA
Sbjct: 3 RLCLTVEYDGTSYGGWQVQPNAQTVQEQIESALAQVIGASVRVYSSGRTDAGVHAIDMKA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H DVE + LP S R VN FL DI+V V V DFHARF AQ +
Sbjct: 63 HFDVETL--------LPL---SAYREGVNRFLPQ--DIVVRQVCRVADDFHARFDAQGKW 109
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YR+ G S + +WHV LD+ AM +A LVG HDF++F+ASGC A + R
Sbjct: 110 YRYRLYRG-RIRSPLHRLTSWHVAGGLDVEAMTQAADALVGTHDFAAFQASGCAAATTQR 168
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL E+ + ID +L + GS
Sbjct: 169 TLFEVLL---------------------IDEGDELIIDVRGSG----------------- 190
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FL + VR+IVG L VG +LT + IL + A APA GL L V Y+
Sbjct: 191 --FLKNMVRIIVGSLVEVGRAKLTAGQLAEILASGQRCRAGLTAPAQGLCLMQVWYE 245
>gi|336430072|ref|ZP_08610028.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336001243|gb|EGN31388.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 256
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 140/311 (45%), Gaps = 69/311 (22%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-----------RTVVGVLEEAFHKFIGQPVSISLSS 105
++ + I ++Y GTR+ G QKQ T+ G LE + G+PV I S
Sbjct: 1 MRNFKIVLQYEGTRYKGWQKQGKGEGDSSSSASPENTIQGKLERLLSRIAGKPVEIQGSG 60
Query: 106 RTDAGVHAASNVC--HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRC 163
RTDAGVHA V H+D + S+ + +N +L DI V V
Sbjct: 61 RTDAGVHAYGQVANFHMDTDDTSE-------------ALMEKINSYLPE--DIGVISVEE 105
Query: 164 VPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDF 223
VP FH+R A+ +TY YR+L+ P +FE+ + V E LD+ AM+ A +L G HDF
Sbjct: 106 VPERFHSRLNAKSKTYRYRVLNSAVP-HIFERRYVYQVPEHLDMEAMRRAAILLTGSHDF 164
Query: 224 SSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVF 283
+F ++ S +RT+D + + V F+ NG
Sbjct: 165 KAFTSAKKGKKSTVRTVDSIQIDRVGEEIHFTFSG------------------NG----- 201
Query: 284 GIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAP 343
FLYH VR+++G L VGTG D+ IL++ + A P+ P
Sbjct: 202 -----------------FLYHMVRILMGTLLEVGTGAKKPEDMTAILESGSRECAGPLVP 244
Query: 344 ACGLSLGFVKY 354
ACGL+L V+Y
Sbjct: 245 ACGLALMEVRY 255
>gi|345879265|ref|ZP_08830931.1| hypothetical protein Rifp1Sym_dy00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223708|gb|EGV50145.1| hypothetical protein Rifp1Sym_dy00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 298
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 136/303 (44%), Gaps = 62/303 (20%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ VEY G+ F+G QKQ + R+V LE A + QPV + + RTD GVH V H
Sbjct: 50 LGVEYDGSGFNGWQKQSHARSVQEDLEAALSRVADQPVRVHCAGRTDTGVHGTGQVVHF- 108
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
E ++R P + V+ VN D+ V+ R V DFHARF A R Y Y
Sbjct: 109 -ETTAERPP-------RAWVLGSNVN----LPNDVSVSWARQVADDFHARFSATGRHYRY 156
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
IL+ +++ WH LD M +A + LVG HDFSS+RA GCQA P+RT+
Sbjct: 157 LILNRGTRSALWRNRATWH-HHPLDEHRMHQAAQALVGTHDFSSYRALGCQAKHPVRTIH 215
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA---RA 298
L VS R E+IA A
Sbjct: 216 RLDVS-------------------------------------------RQGEMIAIEVHA 232
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPE 358
+FL+H VR + GVL A+G G+ VS E IL+ + AP GL L K D PE
Sbjct: 233 NAFLHHMVRNLAGVLMAIGQGKQEVSWAEEILQLRDRRKGGVTAPPHGLYL--TKVDYPE 290
Query: 359 DDQ 361
+ Q
Sbjct: 291 EFQ 293
>gi|345018501|ref|YP_004820854.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033844|gb|AEM79570.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1]
Length = 244
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 137/294 (46%), Gaps = 54/294 (18%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+I VEY GT + G Q Q N TV VL++A K G+ V++ +SRTD GVHA V +
Sbjct: 5 MIVVEYDGTNYHGWQYQENAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 64
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
R + + P E LP A+N L DI+V + V FHAR+ A+ + Y
Sbjct: 65 ---RTNTKIPAEKLP--------YALNSVLPD--DIVVVQAKDVEDSFHARYSAKRKRYK 111
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y IL+ P+ ++ WH++ L + M++A L+G HDFS+F+ASG S IRT+
Sbjct: 112 YIILNRKFPMPTM-RNYCWHISYPLSIEKMKKAASYLIGTHDFSAFKASGSSKTSTIRTV 170
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
+L I K + A
Sbjct: 171 YDL----------------------------------------TIEKNEEFINIEIEANG 190
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+IVG L VG G++ ++V ILK++ T A AP GL L + Y
Sbjct: 191 FLYNMVRIIVGTLSYVGLGKIEENEVYDILKSRDRTKAGITAPPQGLYLIKIMY 244
>gi|377832251|ref|ZP_09815213.1| tRNA pseudouridine synthase A [Lactobacillus mucosae LM1]
gi|377553887|gb|EHT15604.1| tRNA pseudouridine synthase A [Lactobacillus mucosae LM1]
Length = 264
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 151/318 (47%), Gaps = 59/318 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y GT FSG Q Q N RTV L+ A +K P +S+ S RTDAGVHA
Sbjct: 1 MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKNPEPPLSVIGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
+ V H D K G +DS +R+A+N L DI+V V DFHARF
Sbjct: 61 LNQVAHFDCPY----KLG-----NDS--MRKALNSLLPL--DIIVKKAELVSPDFHARFN 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A + Y YR+ + ++ F+++ H +D+ MQ+A + LVG HDF+SF ASG QA
Sbjct: 108 AHSKHYRYRV-DQSDFVNPFKRNYTAHFKYPVDVAKMQKAAQDLVGEHDFTSFVASGSQA 166
Query: 234 NSPIRTL--DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
S +RT+ ++H E + +F + NG
Sbjct: 167 LSNVRTIYQADVHRDEANNEIVFDFVG------------------NG------------- 195
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
FLY+QVR++V L +G+ + V DV R+L AK A APA GL L
Sbjct: 196 ---------FLYNQVRIMVAFLLEIGSNQRPVDDVIRVLAAKDRNQARMTAPASGLYLVS 246
Query: 352 VKYDLPEDDQTDAAESLE 369
V Y + D +ES++
Sbjct: 247 VDYGDQNNKTIDESESIK 264
>gi|403238438|ref|ZP_10917024.1| tRNA pseudouridine synthase A [Bacillus sp. 10403023]
Length = 256
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 141/304 (46%), Gaps = 55/304 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q Q N RTV E A K G+PVSI S RTDA VHA
Sbjct: 1 MNRYKCIISYDGTHFSGYQVQPNKRTVQSEFETALQKMHKGEPVSIVASGRTDAKVHALG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D RIS G +RA+N L + DI V V V DFHARF +
Sbjct: 61 QVIHFD-SRISIPVEGW----------KRALNSLLPN--DISVRSVEMVALDFHARFDVK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+L EP VF++ ++ L+L AM+EA L+G +DF+SF AS +
Sbjct: 108 AKEYRYRLLVSKEP-CVFKRHYTYYYPYPLNLAAMREASDYLIGTYDFTSFCASKTEVQD 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ ++ + + ++D + S + N
Sbjct: 167 KVRTIYQIKIEK----------HEDELIFSFVGN-------------------------- 190
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY+ VR++VG L VG+G+ +E IL K + A AP GL L V Y+
Sbjct: 191 ----GFLYNMVRILVGTLLEVGSGQREARMIENILSGKDRSLAGKTAPGQGLCLWQVFYE 246
Query: 356 LPED 359
+D
Sbjct: 247 EWKD 250
>gi|325913236|ref|ZP_08175605.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 60-B]
gi|325477500|gb|EGC80643.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 60-B]
Length = 260
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 145/304 (47%), Gaps = 55/304 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+QRY + + Y GT F G QKQ N RT+ GV+E+A K G+ V + S RTDAGVHA
Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D PG V+P + + A+N + DI+ D V DFH ++ +
Sbjct: 61 QVIHFDY-------PGNVIPAKNMLL---ALNALMPR--DIIFLDSELVNDDFHVQYSTK 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y Y I++ F ++ H +LD+ M++A L+G HDF+SF ASG Q
Sbjct: 109 AKWYRY-IINQSRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVD 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ +++ + + D VL I +
Sbjct: 168 KVRTIFYINLEQ----------HGDEIVLDVIGD-------------------------- 191
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY- 354
FLY+ VR+I G+L +G G+ V DVE+I+ AK A APA GL L V Y
Sbjct: 192 ----GFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNTAPASGLYLYHVFYD 247
Query: 355 DLPE 358
DLP+
Sbjct: 248 DLPK 251
>gi|312870517|ref|ZP_07730636.1| tRNA pseudouridine synthase A [Lactobacillus oris PB013-T2-3]
gi|417886814|ref|ZP_12530958.1| tRNA pseudouridine synthase A [Lactobacillus oris F0423]
gi|311093979|gb|EFQ52304.1| tRNA pseudouridine synthase A [Lactobacillus oris PB013-T2-3]
gi|341593205|gb|EGS36062.1| tRNA pseudouridine synthase A [Lactobacillus oris F0423]
Length = 256
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 149/301 (49%), Gaps = 55/301 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHK---FIGQPVSISLSSRTDAGVHA 113
+ RY I Y G FSG Q Q + RTV VL+ A +K + P+S+ S RTDAGVHA
Sbjct: 1 MYRYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKYPDPPISVIGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
+ V H D+ P ++ D S+ R+A+N L DI+V V FHAR+
Sbjct: 61 LNQVAHFDL-------PYQL---SDESM-RKALNSLLPL--DILVKKAERVDESFHARYS 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A +TY YR+ G + + F+++ H +D+ M+ A K +G HDF+SF ASG QA
Sbjct: 108 AHRKTYRYRVDQG-DFVDPFKRNYTAHYKVPVDIDKMRLAAKDFIGEHDFTSFVASGSQA 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +RT++++ ++++D P VF
Sbjct: 167 KSNVRTVEKI------------TVDRD---------------PAQNEVVFEF-------- 191
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+Q+R++V L VG+G+ VSDV+R+L AK T A APA GL L V
Sbjct: 192 ---TGNGFLYNQIRIMVAFLLEVGSGQRPVSDVKRVLAAKDRTQARMTAPASGLYLVSVD 248
Query: 354 Y 354
Y
Sbjct: 249 Y 249
>gi|392939543|ref|ZP_10305187.1| pseudouridylate synthase I [Thermoanaerobacter siderophilus SR4]
gi|392291293|gb|EIV99736.1| pseudouridylate synthase I [Thermoanaerobacter siderophilus SR4]
Length = 244
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 141/294 (47%), Gaps = 54/294 (18%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+I VEY GT + G Q Q N TV VL++A K G+ V++ +SRTD GVHA V +
Sbjct: 5 MIVVEYDGTNYHGWQYQENAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 64
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
R + + P E LP A+N L DI+V + V FHAR+ A+ + Y
Sbjct: 65 ---RTNTKIPAEKLP--------YALNSVLPD--DIVVVQAKDVEDSFHARYSAKRKRYK 111
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y IL+ P+ ++ WH+ L++ M++A L+G HDFS+FRASG S IRT+
Sbjct: 112 YIILNRKFPMPTM-RNYCWHIGYPLNIEEMKKAASYLIGTHDFSAFRASGSSKTSTIRTV 170
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
+L + + N+D +I+ A
Sbjct: 171 YDLTIEK----------NED---FINIE---------------------------IEANG 190
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+IVG L VG G++ +V ILK++ T A AP GL L + Y
Sbjct: 191 FLYNMVRIIVGTLVYVGLGKIKEDEVYDILKSRDRTKAGVTAPPQGLYLIKIMY 244
>gi|330790485|ref|XP_003283327.1| hypothetical protein DICPUDRAFT_25596 [Dictyostelium purpureum]
gi|325086752|gb|EGC40137.1| hypothetical protein DICPUDRAFT_25596 [Dictyostelium purpureum]
Length = 323
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 153/306 (50%), Gaps = 27/306 (8%)
Query: 59 RYLIAVEYIGTRFSGSQK---QLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
RY I EY+G F+G Q+ +N V VLE + + + + SSRTD+GV A
Sbjct: 4 RYKITYEYVGKYFTGWQRLTYDINPLPVQNVLENSLKHICNKEIKVFGSSRTDSGVSALG 63
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFL--QSEGDIMVTDVRCVPSDFHARFR 173
N H D+++ + RK G+ LP + + A+N+ + Q + + V +FH+RF
Sbjct: 64 NTSHFDIDQRTSRK-GKPLPLLTTDELTMAINYNVGEQYLDRVRIIKTEIVDDNFHSRFH 122
Query: 174 AQERTYFYRILSG----PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
A RTY Y+IL+ PL + DR ++ LD+ M+EA ++LVG HDFSSFR+
Sbjct: 123 ATSRTYLYKILANCGKKQTPLELL--DRVLEISFILDVNKMKEAAEILVGRHDFSSFRSK 180
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
C N P+RT++ + + E+ + + I+N+ N G GI K
Sbjct: 181 DCTKN-PVRTIEYIKIIELPTPEIIRYHPDFINCSKEINNNV-----NHGLQYIGIEIK- 233
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
A+SFL++QVR++ L VG G +T ++ IL+ K AA + L+L
Sbjct: 234 --------AQSFLHNQVRIMSSALIEVGKGTITKDQLKEILEKKDRLAAPSTIASEPLTL 285
Query: 350 GFVKYD 355
V YD
Sbjct: 286 IKVSYD 291
>gi|427407117|ref|ZP_18897322.1| tRNA pseudouridine synthase A [Selenomonas sp. F0473]
gi|425707592|gb|EKU70636.1| tRNA pseudouridine synthase A [Selenomonas sp. F0473]
Length = 266
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 136/303 (44%), Gaps = 58/303 (19%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVV-GVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
R + + V Y GT + G Q+Q V VLE A + G+PV I+ + RTDAGVHA
Sbjct: 12 RARNLALRVAYDGTNYRGFQRQSPPVVAVQNVLEVALAQVCGEPVEIAAAGRTDAGVHAY 71
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V + + R P LP RAVN L DI VT+ DF AR A
Sbjct: 72 GQVVNFFTD---GRIPAARLP--------RAVNGLLPP--DIAVTEAWEAARDFSARHAA 118
Query: 175 QERTYFYRI--LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+ Y YRI + P P F + AW + LD+ AM+ A +LVG HD+SSFRA+G +
Sbjct: 119 TGKAYLYRIERCAVPNP---FTRSYAWQIFRPLDVEAMRTALALLVGTHDYSSFRAAGGK 175
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
SP+RTLDE+ + V L I+ +
Sbjct: 176 PMSPVRTLDEIRLEAEVDGRLTCYIHGN-------------------------------- 203
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
FLYH VR I+ + VG G+++ I A+ ASP APACGL L V
Sbjct: 204 -------GFLYHMVRNIMSTVVHVGLGDISTRRFAEIFAARNRKLASPTAPACGLYLLRV 256
Query: 353 KYD 355
Y+
Sbjct: 257 DYE 259
>gi|85713817|ref|ZP_01044807.1| tRNA pseudouridine synthase A [Nitrobacter sp. Nb-311A]
gi|85699721|gb|EAQ37588.1| tRNA pseudouridine synthase A [Nitrobacter sp. Nb-311A]
Length = 245
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 135/298 (45%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q N +V G LE A G V + + RTDAGVHA +
Sbjct: 1 MPRYRLTIEYDGGPFCGWQYQDNGPSVQGALEAAVKAICGDCVRVHGAGRTDAGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + P +R +N L+ I V + VP F ARF A+
Sbjct: 61 VAHCDIAK-------HFAPDR----LRDGLNAHLRPH-PIGVLEAEIVPDSFEARFSARR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + L++ + R W V LD AM +A + L+G HDF++FR + CQA SP
Sbjct: 109 RHYIYRIANRRANLAI-DVGRVWRVPRPLDTEAMHDAAQRLLGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V G NV +I
Sbjct: 168 EKTLDQLDVVR------------------------------NGDNV----------SIIT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARS+L+ QVR +VG L VG G + D+ L A+ A P+AP GL L V Y
Sbjct: 188 LARSYLHSQVRSMVGSLVWVGHGRWSADDLSSALAARRREACGPVAPPDGLYLVRVDY 245
>gi|332862130|ref|XP_513709.3| PREDICTED: pseudouridylate synthase-like 1 [Pan troglodytes]
Length = 261
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 117/196 (59%), Gaps = 15/196 (7%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + +PV ++SSRTDAGVHA
Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S R PP V+ A+N L+ ++ R VPSDFHAR+ A
Sbjct: 73 SNAAHLDVQRRSGR------PPFPPEVLAEALNTHLRHPAIRVLRAFR-VPSDFHARYAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G + L VFE++ W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDVVAMQEAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVS 246
SP+RTL + VS
Sbjct: 186 SPVPSPVRTLRRVSVS 201
>gi|297666734|ref|XP_002811665.1| PREDICTED: tRNA pseudouridine synthase-like 1 [Pongo abelii]
Length = 287
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 146/276 (52%), Gaps = 41/276 (14%)
Query: 86 VLEEAFHKFIG-QPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRR 144
VL+EA + +PV ++SSRTDAGVHA SN H+DV+R S R PP V+
Sbjct: 27 VLQEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGR------PPFPPEVLAE 80
Query: 145 AVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSG---PEPLSVFEKDRAWHV 201
+N L+ I V VPSDFHAR A R Y YR+ +G + L VFE++ W +
Sbjct: 81 VLNRHLRHPA-IRVLRAFRVPSDFHARHAATSRIYLYRLATGCHRRDELPVFERNLCWAL 139
Query: 202 TEE-LDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQD 260
+ LD+ A+QEA + L+G HDFS+F+++G SP+RT+ + VS Q
Sbjct: 140 PADCLDVVAVQEAAQHLLGTHDFSAFQSTGSPVPSPVRTMRRVSVSP----------GQA 189
Query: 261 SPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGE 320
SP+++ ++ +K R + + ++SFLY QVR + VL AVG G
Sbjct: 190 SPLVTPEES-----------------RKLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGA 232
Query: 321 LTVSDVERILKAKTVTAA--SPMAPACGLSLGFVKY 354
L + V+ IL+++ + +APA GL L V Y
Sbjct: 233 LAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 268
>gi|224079884|ref|XP_002194368.1| PREDICTED: tRNA pseudouridine synthase-like 1 [Taeniopygia guttata]
Length = 427
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 134/266 (50%), Gaps = 43/266 (16%)
Query: 98 PVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIM 157
P+ +SSRTDAGVHA +N H+D++ R PG+ P + + +NH L+ E I
Sbjct: 169 PIKFHISSRTDAGVHALANAAHLDIQ----RPPGKA--PFSGQQLVQGLNHHLRPE-PIR 221
Query: 158 VTDVRCVPSDFHARFRAQERTYFYRILSG---PEPLSVFEKDRAWH-VTEELDLRAMQEA 213
+ + V S FHARF A RTY YR+L G + VFE+D W LD+ AM+EA
Sbjct: 222 ILSAQRVSSTFHARFCALSRTYIYRLLLGCAHHSQIPVFEQDLCWAPAGGPLDVAAMREA 281
Query: 214 CKVLVGCHDFSSFRA--SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSS 271
+ L+G HDFSSFR+ + A SP+RTL +L + Q +P
Sbjct: 282 AQFLLGTHDFSSFRSLHAEAAAQSPVRTLQQLQL-------------QPAP--------- 319
Query: 272 KLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILK 331
G + +EV ++RSFLY QVR +VG L AVG G L + +L+
Sbjct: 320 ------GFLQQHYLHSGLEFWEVKVKSRSFLYRQVRRMVGALVAVGQGRLAPVQLRELLE 373
Query: 332 AKTVTAASP--MAPACGLSLGFVKYD 355
+ A P MAPA GL L V+Y
Sbjct: 374 LRDPHAFPPHAMAPAAGLFLQRVEYS 399
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 19/144 (13%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RYL+ +Y+GTR+ R + + A P+ +SSRTDAGVHA +N
Sbjct: 7 RYLVFFQYLGTRY---------RIIAELTRAAERLKPSAPIKFHISSRTDAGVHALANAA 57
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H+D++ R PG+ P S + + +NH L+ E I + + V S FHARF A RT
Sbjct: 58 HLDIQ----RPPGKA--PFSSQQLVQGLNHHLRPE-PIRILSAQRVSSTFHARFCALSRT 110
Query: 179 YFYRILSG---PEPLSVFEKDRAW 199
Y YR+L G + VFE+D W
Sbjct: 111 YIYRLLLGCAHHSQIPVFEQDLCW 134
>gi|347761820|ref|YP_004869381.1| tRNA pseudouridine synthase A [Gluconacetobacter xylinus NBRC 3288]
gi|347580790|dbj|BAK85011.1| tRNA pseudouridine synthase A [Gluconacetobacter xylinus NBRC 3288]
Length = 270
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 139/300 (46%), Gaps = 56/300 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQ--LNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
R+ + +EY G G Q+Q + +V G+LE A + G+ V + RTDAGVHA+
Sbjct: 16 RWAVLMEYDGRGLVGWQRQKGQDLLSVQGLLESAALRLTNGRDVRSITAGRTDAGVHASG 75
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D P +V S+ VR +N +++ ++V R V ++ARF A
Sbjct: 76 QVAHLDF-------PADVT--LSSATVRDGLNFYMKPH-PVVVLMARPVLPHWNARFSAI 125
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRIL+ P E + WHV L+ MQ+A LVG HDF+SFRA+ CQA S
Sbjct: 126 SRAYRYRILNRPA-RPALEDGQVWHVRAPLNENIMQQAAMHLVGRHDFTSFRATACQARS 184
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V ++ Y VI
Sbjct: 185 PVRTLDRLDV-----------------------------------------RREGEYVVI 203
Query: 296 -ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A ARSFL+HQVR + G LK VG G V L A AA P AP GL L V Y
Sbjct: 204 EAGARSFLHHQVRNMAGTLKLVGEGRWEPEQVVHALAACDRRAAGPTAPPEGLCLTGVGY 263
>gi|88607493|ref|YP_505097.1| tRNA pseudouridine synthase A [Anaplasma phagocytophilum HZ]
gi|123722826|sp|Q2GKK4.1|TRUA_ANAPZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|88598556|gb|ABD44026.1| tRNA pseudouridine synthase A [Anaplasma phagocytophilum HZ]
Length = 246
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 146/298 (48%), Gaps = 55/298 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNC--RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
RY VEY GT F G Q+Q ++V +E + +F Q V + + RTDAGVHA
Sbjct: 2 RYKAVVEYEGTSFIGWQRQHGVVGKSVQESIERSIKEFCQQSVIVYAAGRTDAGVHATGQ 61
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ ++S+ + V++ A+NH+L++E + + + V +FHARF A++
Sbjct: 62 VVHFDL-KVSR----------EDYVIKNALNHYLRNE-KVSILQLERVDEEFHARFSAKK 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y+I + PL + + R WHV + L++ M+EA +VG HDF+SFRA CQ+ S
Sbjct: 110 RHYTYKISNREAPLCI-DLMRMWHVPKRLNVENMREAASYIVGKHDFASFRAKDCQSKSS 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+T+D + ++++ +IN
Sbjct: 169 IKTVDSI---DIIAAEEEININ-------------------------------------I 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+SFL+ QVR+ VG G G + V IL+ K AA APA GL L V Y
Sbjct: 189 SAQSFLHKQVRITVGTFVECGMGLYPPAHVLEILEKKDRAAAGITAPAHGLYLTRVDY 246
>gi|351731206|ref|ZP_08948897.1| tRNA pseudouridine synthase A [Acidovorax radicis N35]
Length = 273
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 138/306 (45%), Gaps = 46/306 (15%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + V Y G +SG Q QL+ TV LE A +F PVS + RTDAGVH
Sbjct: 1 MTRVALGVSYNGQTYSGWQSQLSGNTVQDKLEAALGRFATHPVSTLCAGRTDAGVHGLMQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D +R P SS V R N FL + DI V + VP DFHAR A
Sbjct: 61 VVHFDTPL--QRPP--------SSWV-RGTNTFLPA--DIAVQWAQPVPHDFHARASAVA 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y +L P SV W V LD AM++A L+G HDF+SFRAS CQA SP
Sbjct: 108 RRYAYVLLQSPVRPSVDAGRVGW-VYHTLDHDAMRQAADQLLGEHDFTSFRASACQAKSP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL + + +N P L G + +E
Sbjct: 167 IKTLQRIDIVR-------RGLNAPHPEL-------------------GWSPCYWRFEF-- 198
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD- 355
A +FL+H +R I+G L A+G G + +L AK+ AA+P GL YD
Sbjct: 199 EANAFLHHMIRNIMGCLIAIGQGNQPPGWITEVLAAKSRDAAAPTFSPDGLYFQGPIYDA 258
Query: 356 ---LPE 358
LPE
Sbjct: 259 SWGLPE 264
>gi|402823210|ref|ZP_10872647.1| tRNA pseudouridine synthase A [Sphingomonas sp. LH128]
gi|402263273|gb|EJU13199.1| tRNA pseudouridine synthase A [Sphingomonas sp. LH128]
Length = 248
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 142/301 (47%), Gaps = 55/301 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +E+ G+ F G Q+Q++ +V +E+A G+ + + RTDAGVHA
Sbjct: 1 MTRFALTLEFDGSPFMGLQRQVHGPSVQQSVEDAAFAVTGERAIMHAAGRTDAGVHALGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H+D+ + P ++ + A+N L+ I V VP D+HARF
Sbjct: 61 RAHIDIAK-----------PFEAYKLLGALNDRLRPH-PIAVLSCEVVPDDWHARFSCVG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + PL++ EK +AW V + LD AM A ++LVG HDF++FR+ CQ++SP
Sbjct: 109 RAYIYRIANRRAPLTL-EKGKAWMVPKPLDAEAMHRAAQILVGLHDFTTFRSVHCQSSSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V R++ + A
Sbjct: 168 LKTLDRLEV----------------------------------------RREGEMVLIEA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G + D+ L A+ AP GL FV+
Sbjct: 188 EARSFLHHQVRSMVGCLALVGMGRWSEEDLREALAARNRRKLGLNAPPDGLY--FVRAVY 245
Query: 357 P 357
P
Sbjct: 246 P 246
>gi|393776345|ref|ZP_10364641.1| tRNA pseudouridine synthase a [Ralstonia sp. PBA]
gi|392716734|gb|EIZ04312.1| tRNA pseudouridine synthase a [Ralstonia sp. PBA]
Length = 280
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 149/330 (45%), Gaps = 62/330 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G F+G Q Q + TV LE A +F G PV+++++ RTD GVHA
Sbjct: 1 MTRIALGIQYDGASFNGWQSQPHRNTVQDTLEAALQQFTGMPVAVTVAGRTDTGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D R+P + R VN FL + V V DFHARF A E
Sbjct: 61 VVHLDTAL--TREPFSWV---------RGVNAFLPPS--VAVQWATPVTDDFHARFAATE 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTE---ELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
R Y+Y + +GP + + + + LD AM EA + L+G HDFS+FRA+ CQA
Sbjct: 108 RMYYYALYTGPTRVPLLHGRAGYQMLPPGVTLDCTAMVEAARHLLGEHDFSAFRAADCQA 167
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T ++ + +P G VF
Sbjct: 168 RSPVKTCYDVTI-----------------------------VPR-GQWVF---------- 187
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ RA +FL+H VR ++G L A+G G + +L+ + T A+P GL L V
Sbjct: 188 LRFRASAFLHHMVRNLMGCLVAIGRGRAGPDWMRELLEGRDRTVAAPTFMPDGLYLARVG 247
Query: 354 YD----LPEDDQTDAA--ESLETCPDPVSR 377
Y LPE D + + CP P SR
Sbjct: 248 YPDTFVLPEPDLAASLFYGVFDACPAPASR 277
>gi|303257106|ref|ZP_07343120.1| tRNA pseudouridine synthase A [Burkholderiales bacterium 1_1_47]
gi|302860597|gb|EFL83674.1| tRNA pseudouridine synthase A [Burkholderiales bacterium 1_1_47]
Length = 259
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 142/296 (47%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY G F G Q Q + +TV LE A +F G+ V + RTDA VHA V
Sbjct: 2 RVALGLEYDGRSFEGWQTQPSGQTVQDYLEAAVVQFTGEKVKAVCAGRTDANVHATGQVI 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H+D + RK + S VR +N +L +E V + VP +FHARF A RT
Sbjct: 62 HLDTG--ADRK--------EISWVR-GLNSYLPTE--CAVRWAKVVPDEFHARFSACSRT 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I++ P + W V L+ + M+ A + LVG HDFSSFRA+GCQ+ +P++
Sbjct: 109 YEYWIVNEPVRSPILSGRTGW-VFRPLNEKNMEAAGQFLVGEHDFSSFRAAGCQSKTPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
++ LHV +LG R ++ +A
Sbjct: 168 NIEYLHV-------------------------IRLG---------------RFIKIRVKA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FLYH VR IVG L VGTG +V + +L+AK+ AA+P GL L V Y
Sbjct: 188 NAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYLTGVGY 243
>gi|357974115|ref|ZP_09138086.1| tRNA pseudouridine synthase A [Sphingomonas sp. KC8]
Length = 247
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 143/302 (47%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +E+ G F G Q+Q + +V +E+A + G P + RTDAGVHA +
Sbjct: 1 MTRFRLTIEFDGRPFMGWQRQAHGPSVQQAIEDAIERITGAPAGAHAAGRTDAGVHAEAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
HVDVER P + A+N L+ + I + V D+HARF
Sbjct: 61 TAHVDVER-----------PFQPFRLMEALNAHLRPQ-PIAILACEIVADDWHARFSCLG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL++ + RAW V LD AM A + LVG HDF++FR++ CQ+ SP
Sbjct: 109 RRYSYRIINRRAPLAL-DAGRAWQVAAPLDAEAMHAAAQRLVGLHDFTTFRSAHCQSESP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L+V+ G + + A
Sbjct: 168 VKTLDLLNVARY------------------------------GDEI----------AIEA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G+ T D+ L+A+ A AP GL F++
Sbjct: 188 AARSFLHHQVRSMVGCLMLVGRGKWTADDLSDALEARDRAALGLNAPPDGLF--FIEARY 245
Query: 357 PE 358
PE
Sbjct: 246 PE 247
>gi|383648786|ref|ZP_09959192.1| tRNA pseudouridine synthase A [Sphingomonas elodea ATCC 31461]
Length = 248
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 140/301 (46%), Gaps = 55/301 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VE+ G F G Q+Q + +V +E+A + G+ V + + RTDAGVH
Sbjct: 1 MTRFALTVEFDGRPFMGWQRQDHGPSVQQTIEDAAYAVTGEDVVVHAAGRTDAGVHGLGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
HVD+ + P + A+N ++ + + V D+HARF
Sbjct: 61 RAHVDIAK-----------PMAPFRLMEALNARMRP-APVAILACEQVSEDWHARFSCLS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL+ +EK AW ++ LD+ AMQ A LVG HDF++FR++ CQA SP
Sbjct: 109 RHYEYRIVTRRAPLT-WEKGLAWRLSGPLDVAAMQTAAAYLVGRHDFTTFRSAHCQAESP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L V E V A
Sbjct: 168 VRTLDRLDVVE----------------------------------------SDERISVFA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G+ DV L+A+ TA AP GL F++ +
Sbjct: 188 SARSFLHHQVRSMVGCLSLVGQGKWAPEDVRDALEAQDRTALGLNAPPDGLF--FLRAEY 245
Query: 357 P 357
P
Sbjct: 246 P 246
>gi|312874027|ref|ZP_07734062.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2052A-d]
gi|312874727|ref|ZP_07734746.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2053A-b]
gi|325912360|ref|ZP_08174756.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 143-D]
gi|329920629|ref|ZP_08277316.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 1401G]
gi|349611897|ref|ZP_08891127.1| tRNA pseudouridine synthase A [Lactobacillus sp. 7_1_47FAA]
gi|311089472|gb|EFQ47897.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2053A-b]
gi|311090367|gb|EFQ48776.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2052A-d]
gi|325475831|gb|EGC79001.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 143-D]
gi|328935887|gb|EGG32347.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 1401G]
gi|348608362|gb|EGY58347.1| tRNA pseudouridine synthase A [Lactobacillus sp. 7_1_47FAA]
Length = 260
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 144/304 (47%), Gaps = 55/304 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+QRY + + Y GT F G QKQ N RT+ GV+E+A K G+ V + S RTDAGVHA
Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D PG V+P + + A+N + DI+ D V DFH ++ +
Sbjct: 61 QVIHFDY-------PGNVIPAKNMLL---ALNALMPR--DIIFLDSELVNDDFHVQYSTK 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y Y I++ F ++ H +LD+ M++A L+G HDF+SF ASG Q
Sbjct: 109 AKWYRY-IINQSRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVD 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ +++ + + D VL I +
Sbjct: 168 KVRTIFYINLEQ----------HGDEIVLDVIGD-------------------------- 191
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY- 354
FLY+ VR+I G+L +G G+ V DVE+I+ AK APA GL L V Y
Sbjct: 192 ----GFLYNMVRIITGLLIDIGHGQKEVEDVEKIILAKNRQQVRNTAPASGLYLYHVFYD 247
Query: 355 DLPE 358
DLP+
Sbjct: 248 DLPK 251
>gi|114327354|ref|YP_744511.1| tRNA pseudouridine synthase A [Granulibacter bethesdensis CGDNIH1]
gi|114315528|gb|ABI61588.1| tRNA pseudouridine synthase A [Granulibacter bethesdensis CGDNIH1]
Length = 270
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 141/307 (45%), Gaps = 63/307 (20%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN---------CRTVVGVLEEAFHKFI-GQPVSISLSSRTD 108
RY + +EY GT F G Q+Q +V VLE+A + G+ VS ++ RTD
Sbjct: 12 RYALRIEYDGTPFIGWQRQGTDDSATAQGRAVSVQWVLEQAAARLARGEAVSSIVAGRTD 71
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVHA + V +D+ P P VR A+N F + + + P +
Sbjct: 72 AGVHAQAQVAQIDL-------PTAFHPER----VREALN-FHMKPYPVAILEAAYAPDGW 119
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
+ARF A R+Y Y IL+ ++ E R WHV + LD M A K L+G HDF+SFRA
Sbjct: 120 NARFSAIGRSYRYLILNRRARPALMEG-RVWHVAQPLDADTMDGAAKHLLGRHDFTSFRA 178
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
+ CQA SP+RTLD L V R+
Sbjct: 179 AACQAKSPLRTLDRLDV----------------------------------------RRD 198
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
+IA ARSFL+HQVR +VG LK VG G T V L A+ A P AP GL+
Sbjct: 199 GDLITIIAEARSFLHHQVRNMVGTLKLVGDGRWTAEHVAAALAARDRAKAGPTAPPDGLA 258
Query: 349 LGFVKYD 355
L V Y+
Sbjct: 259 LTGVIYE 265
>gi|260881651|ref|ZP_05404943.2| tRNA pseudouridine synthase A [Mitsuokella multacida DSM 20544]
gi|260848088|gb|EEX68095.1| tRNA pseudouridine synthase A [Mitsuokella multacida DSM 20544]
Length = 264
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 140/308 (45%), Gaps = 70/308 (22%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
R + ++ V Y GT + G Q+Q V +LEE G + ++ + RTDAGVHA
Sbjct: 12 RARNIVLKVAYDGTAYHGFQRQTPPIVAVQNILEEKLQTIFGDTIELAAAGRTDAGVHAY 71
Query: 115 SNVCH------VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
V + + V+RI+ R +LP D VVR A E D +DF
Sbjct: 72 GQVVNFFTDGRIPVDRIA-RAANSLLP--DDIVVRAA------GEAD----------TDF 112
Query: 169 HARFRAQERTYFYRILSG--PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSF 226
AR A+ +TY YRI G P+P++ AW++ LD+ AM+EA ++G HDFS+F
Sbjct: 113 SARHSAKSKTYVYRIQQGEVPDPMTA---RYAWYIRRPLDVAAMREALGAILGTHDFSAF 169
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RASG SP+RT+ E + E L I+ GS
Sbjct: 170 RASGGAPMSPVRTMYEATIEEAAGQQLICRIH--------------------GSG----- 204
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
FLYH VR I+G L VG G LT + IL+ + T AS APACG
Sbjct: 205 --------------FLYHMVRNIIGTLANVGLGVLTPARFGEILEGRDRTKASATAPACG 250
Query: 347 LSLGFVKY 354
L L V Y
Sbjct: 251 LYLEHVDY 258
>gi|331000940|ref|ZP_08324577.1| tRNA pseudouridine synthase A [Parasutterella excrementihominis YIT
11859]
gi|329569899|gb|EGG51656.1| tRNA pseudouridine synthase A [Parasutterella excrementihominis YIT
11859]
Length = 259
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 142/296 (47%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY G F G Q Q + +TV LE A +F G+ V + RTDA VHA V
Sbjct: 2 RVALGLEYDGRSFEGWQTQPSGQTVQDYLEAAVVQFTGEKVKAVCAGRTDANVHATGQVI 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H+D + RK + S VR +N +L +E V + VP +FHARF A RT
Sbjct: 62 HLDTG--ADRK--------EISWVR-GLNSYLPTE--CAVRWAKVVPDEFHARFSACSRT 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I++ P + W V L+ + M+ A + LVG HDFSSFRA+GCQ+ +P++
Sbjct: 109 YEYWIVNEPVRSPILSGRTGW-VFRPLNEKNMEAAGQFLVGEHDFSSFRAAGCQSKTPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
++ LHV +LG R ++ +A
Sbjct: 168 NIEYLHV-------------------------IRLG---------------RFIKIRVKA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FLYH VR IVG L VGTG +V + +L+AK+ AA+P GL L V Y
Sbjct: 188 DAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYLTGVGY 243
>gi|85373239|ref|YP_457301.1| tRNA pseudouridine synthase A [Erythrobacter litoralis HTCC2594]
gi|123005078|sp|Q2NCT7.1|TRUA_ERYLH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|84786322|gb|ABC62504.1| tRNA pseudouridine synthase A [Erythrobacter litoralis HTCC2594]
Length = 247
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 144/301 (47%), Gaps = 55/301 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +E+ GT F G Q+Q + +V +EEA + Q +++ + RTD GVHA
Sbjct: 1 MTRFALTLEFDGTPFMGLQRQKHGPSVQQAVEEAARATLNQDITLHSAGRTDTGVHALGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D E + P ++ +N L+ I VT+ +P D+HARF
Sbjct: 61 RSHFDAE--TDLTPFRLMG---------GLNAHLRPH-PIAVTNCEIMPEDWHARFACIG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRI++ PL++ ++ RAW V ++LD AMQ A ++LVG HDF++FR++ CQA P
Sbjct: 109 RSYVYRIINRRAPLTI-DRKRAWQVPQQLDHEAMQRAAQLLVGTHDFTTFRSTQCQAKDP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+++LD L V G + V A
Sbjct: 168 VKSLDRLEVER------------------------------DGDEI----------RVHA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG LK VG G +VE L A+ AP GL FV +
Sbjct: 188 EARSFLHHQVRSMVGCLKLVGQGTWREEEVEEALLARDRQRLGLNAPPHGLY--FVAAEY 245
Query: 357 P 357
P
Sbjct: 246 P 246
>gi|406707252|ref|YP_006757604.1| pseudouridylate synthase I [alpha proteobacterium HIMB59]
gi|406653028|gb|AFS48427.1| pseudouridylate synthase I [alpha proteobacterium HIMB59]
Length = 245
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 142/293 (48%), Gaps = 53/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY G +SG Q Q N +TV +++A KF G+ I + RTDAGVHA + +
Sbjct: 6 LTIEYHGLPYSGWQSQKNEKTVQDEVQKAIFKFSGEKKIIQGAGRTDAGVHALAQCANFI 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+E+ + +N L +E I +T V V DF+ARF A+ +TY Y
Sbjct: 66 LEK-----------DFSEYQILSGINFHLGNE-KIKITQVEKVDDDFNARFTAKLKTYHY 113
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
+I + P SV + + + H+ + L++ AM+EA + +G HDFSSFRA GCQA +PIR+++
Sbjct: 114 QIYNSTSP-SVLQDEISVHIRQPLNVVAMREAIQNFIGKHDFSSFRARGCQAKTPIRSIN 172
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
+ + + +D + I +A+SF
Sbjct: 173 KTDI-----------VQEDKKI-----------------------------TFIFQAQSF 192
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY Q+R++VG L VG S + +L K + A P P+ GL L ++Y
Sbjct: 193 LYQQIRIMVGSLLEVGLNNQNPSWIADLLNQKNRSLAGPTMPSKGLLLKDIQY 245
>gi|205372037|ref|ZP_03224854.1| tRNA pseudouridine synthase A [Bacillus coahuilensis m4-4]
Length = 251
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 141/298 (47%), Gaps = 54/298 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R V+Y GT ++G Q Q N +T+ G +E+ K G+P+ IS S RTDAGVHA
Sbjct: 4 MRRIKCTVQYDGTWYAGYQVQPNSKTIQGEIEKVLEKIHGKPIRISASGRTDAGVHAIGQ 63
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D + +K + LP +S Q DI+V V V FH+RF + E
Sbjct: 64 VFHFDTD--TKFPVEKWLPIFNS-----------QLPNDIVVIHVEEVAGSFHSRFGSIE 110
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+ Y Y++ P S F A+HV L ++ M+EA + L+G HDF+SF ++ +
Sbjct: 111 KEYRYKVYRAPHK-SPFLIHHAYHVPHSLSVQKMEEASRYLLGTHDFTSFCSAKTEVEDK 169
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RT+ + + E + FS + NG
Sbjct: 170 VRTIFTISIEEEENMLTFSLVG------------------NG------------------ 193
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+I+GVL VG G+ +V+ IL+AK A APA GL L VKY
Sbjct: 194 ----FLYNMVRIIIGVLIEVGQGKRAPIEVKEILEAKDRRAGGKTAPAQGLYLYRVKY 247
>gi|222475190|ref|YP_002563606.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Florida]
gi|254995027|ref|ZP_05277217.1| tRNA pseudouridine synthase A [Anaplasma marginale str.
Mississippi]
gi|255003171|ref|ZP_05278135.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Puerto
Rico]
gi|255004302|ref|ZP_05279103.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Virginia]
gi|254789601|sp|B9KIN8.1|TRUA_ANAMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|222419327|gb|ACM49350.1| tRNA pseudouridylate synthase A (truA) [Anaplasma marginale str.
Florida]
Length = 247
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 144/299 (48%), Gaps = 56/299 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQ--LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
RY VEY GT F G Q+Q + R+V +E+A ++ Q V++ + RTDAGVHA
Sbjct: 2 RYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQHVTVFAAGRTDAGVHALGQ 61
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ V++ A+NH+L+S+ + + + FHARF A++
Sbjct: 62 VVHFDLN-----------TSLQDYVIKNALNHYLRSDM-VSILSLEEAAEGFHARFSAKK 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVG-CHDFSSFRASGCQANS 235
R Y Y+I++ P ++ R WHV ++L++ MQEA +VG DF+SFRA CQ+ S
Sbjct: 110 RHYMYKIVNRDAP-PCLDRLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+D ++ G+N+F V
Sbjct: 169 SVRTVD------------------------------RIDCVREGNNIF----------VH 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+SFL+ QVR+IVG L G G S V IL+ K AA AP GL L V+Y
Sbjct: 189 VSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHGLYLVLVEY 247
>gi|91762406|ref|ZP_01264371.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique
HTCC1002]
gi|91718208|gb|EAS84858.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique
HTCC1002]
Length = 246
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 139/299 (46%), Gaps = 58/299 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EYIGT F G Q Q +++ ++ KF+ + V + S RTDAGVHA
Sbjct: 3 RYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQSA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D ++ + + +++NHF+ +G I V ++ FHAR A++R
Sbjct: 63 HFDCKK----------EIQNLDKLLKSINHFINDKG-ISVLAIKKRSLKFHARHSAKQRI 111
Query: 179 YFYRI---LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
Y Y I LS P EK+R WH+ ++LD+ M++ K L+G DFS+FRAS C A S
Sbjct: 112 YKYIIFNRLSKPS----LEKERGWHIIKKLDIELMKKGAKKLLGTKDFSTFRASSCNAKS 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
I+T+ + I+ K E+
Sbjct: 168 SIKTMKSVK----------------------------------------IKSKDGRIEIQ 187
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+++SFL QVR +VG LK + + + E ++K+K +P APA GL L V Y
Sbjct: 188 FKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEGLFLEKVIY 246
>gi|167036834|ref|YP_001664412.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167039553|ref|YP_001662538.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514]
gi|256752665|ref|ZP_05493517.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus
CCSD1]
gi|300915196|ref|ZP_07132511.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561]
gi|307725120|ref|YP_003904871.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513]
gi|320115256|ref|YP_004185415.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|238687621|sp|B0K5S6.1|TRUA_THEPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238687718|sp|B0KCN3.1|TRUA_THEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166853793|gb|ABY92202.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514]
gi|166855668|gb|ABY94076.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748485|gb|EEU61537.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus
CCSD1]
gi|300888920|gb|EFK84067.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561]
gi|307582181|gb|ADN55580.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513]
gi|319928347|gb|ADV79032.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 244
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 139/289 (48%), Gaps = 54/289 (18%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+I VEY GT + G Q Q N TV VL++A K G+ V++ +SRTD GVHA V +
Sbjct: 5 MIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 64
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ + + P E LP A+N L DI+V + V FHAR+ A+ + Y
Sbjct: 65 ---KTNTKIPAEKLP--------YALNSVLPD--DIVVVQAKDVEDSFHARYSAKRKRYK 111
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y IL+ + ++ WH++ L++ M++A L+G HDFS+F+ASG S IRT+
Sbjct: 112 YIILNRKFQMPTM-RNYCWHISYPLNIEEMKKAASYLIGTHDFSAFKASGSSKTSTIRTV 170
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
+L + + N+D +I+ A
Sbjct: 171 YDLTIEK----------NED---FINIE---------------------------IEANG 190
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FLY+ VR+IVG L VG G++ +V ILK+K T A AP GL L
Sbjct: 191 FLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDRTKAGITAPPQGLYL 239
>gi|333984069|ref|YP_004513279.1| tRNA pseudouridine synthase A [Methylomonas methanica MC09]
gi|333808110|gb|AEG00780.1| tRNA pseudouridine synthase A [Methylomonas methanica MC09]
Length = 271
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 143/329 (43%), Gaps = 66/329 (20%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
N + R ++ +EY GT ++G Q Q RT+ L+ A K QP+++ + RTDAGVHA
Sbjct: 2 NDEMTRIVLGIEYDGTAYAGWQWQAGKRTLQAELQTALSKIADQPITVHCAGRTDAGVHA 61
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFL-----QSEGDIMVTDVRCVPSDF 168
V H D V+R + +L Q DI +T V+ +DF
Sbjct: 62 LEQVVHFD------------------CAVQRDLKAWLMGGNSQLPDDIRITWVKPAIADF 103
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HAR+ R Y Y IL+ P ++ W + LD M A + L+G HDFSSFRA
Sbjct: 104 HARYSVIARFYRYVILNRPMKSALLRTQATW-CYQPLDADKMHAAAQHLIGEHDFSSFRA 162
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
GCQ++SP R +H +V QD V+ I
Sbjct: 163 QGCQSHSPNRF---MHFIDVY--------RQDERVIIDI--------------------- 190
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
A +FL+H VR I GVL ++G G+ TV ++L+ K + A+ AP GL
Sbjct: 191 --------CANAFLHHMVRNIAGVLMSIGMGKATVDWTAQLLEIKDRSQAAATAPPFGLH 242
Query: 349 LGFVKYDLPEDDQTDAAESLETCPDPVSR 377
LG V Y PE PD R
Sbjct: 243 LGGVYY--PEHYGIARHTVFAKLPDDAKR 269
>gi|56416825|ref|YP_153899.1| tRNA pseudouridine synthase A [Anaplasma marginale str. St. Maries]
gi|62901203|sp|Q5PAN6.1|TRUA_ANAMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56388057|gb|AAV86644.1| pseudouridylate synthase [Anaplasma marginale str. St. Maries]
Length = 247
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 144/299 (48%), Gaps = 56/299 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQ--LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
RY VEY GT F G Q+Q + R+V +E+A ++ Q V++ + RTDAGVHA
Sbjct: 2 RYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQCVTVFAAGRTDAGVHALGQ 61
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ V++ A+NH+L+S+ + + + FHARF A++
Sbjct: 62 VVHFDLN-----------TSLQDYVIKNALNHYLRSDM-VSILSLEEAAEGFHARFSAKK 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVG-CHDFSSFRASGCQANS 235
R Y Y+I++ P ++ R WHV ++L++ MQEA +VG DF+SFRA CQ+ S
Sbjct: 110 RHYMYKIVNRDAP-PCLDRLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+D ++ G+N+F V
Sbjct: 169 SVRTVD------------------------------RIDCVREGNNIF----------VH 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+SFL+ QVR+IVG L G G S V IL+ K AA AP GL L V+Y
Sbjct: 189 VSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHGLYLVLVEY 247
>gi|126731534|ref|ZP_01747340.1| tRNA pseudouridine synthase A [Sagittula stellata E-37]
gi|126708070|gb|EBA07130.1| tRNA pseudouridine synthase A [Sagittula stellata E-37]
Length = 249
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 136/296 (45%), Gaps = 51/296 (17%)
Query: 64 VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVE 123
+EY G FSG Q+Q +V +E+A + P +I+ + RTDAGVHA V D+
Sbjct: 1 MEYDGRPFSGWQRQAAQPSVQQAIEDALARLEPGPFTIAGAGRTDAGVHARGQVAQCDMA 60
Query: 124 RISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRI 183
+ D + A+N L+ + + V D+HARF A ER Y +RI
Sbjct: 61 K-----------DWDPFRLSEALNFHLKP-APVAIRACARVADDWHARFSAVERRYLFRI 108
Query: 184 LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDEL 243
L P + E+ + W V LD+ AM+E LVG HDF++FR+ CQA SP++TLD L
Sbjct: 109 LMRRAP-ATLEEGQVWRVMHPLDVTAMREGAAHLVGRHDFTTFRSVMCQAKSPVKTLDSL 167
Query: 244 HVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLY 303
+ V D P G V+ RARSFL+
Sbjct: 168 EIKAV-----------DGPA---------------GPEVW----------FSLRARSFLH 191
Query: 304 HQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPED 359
+QVR VG L+ VG G V L+A+ A P+ P GL L V Y PED
Sbjct: 192 NQVRSFVGTLERVGAGAWAPDRVGAALEARDRAACGPVCPPQGLYLTGVGY--PED 245
>gi|421747252|ref|ZP_16184983.1| tRNA pseudouridine synthase A [Cupriavidus necator HPC(L)]
gi|409774148|gb|EKN55811.1| tRNA pseudouridine synthase A [Cupriavidus necator HPC(L)]
Length = 274
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 151/319 (47%), Gaps = 63/319 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + + Y GT FSG Q Q + TV VLE+A +F G+ + +++ RTDAGVHA
Sbjct: 1 MTRLALGLHYDGTAFSGWQSQPHRNTVQDVLEDAIAQFAGERLPTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D + R+P + R VN FL I + + V FHARF A E
Sbjct: 61 VIHLDT--VLSREPFSWV---------RGVNAFLPPT--IALQWAKPVDEAFHARFAAFE 107
Query: 177 RTYFYRILSGPE--PLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASG 230
RTY+Y + +GP PL RA ++ + LD+ AM+EA L+G HDFS+FRA+
Sbjct: 108 RTYYYALYTGPHRAPLV---HGRAGYLMLPPGKRLDVDAMREAAACLIGEHDFSAFRAAE 164
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA SP++T+ E+ + ++D L
Sbjct: 165 CQARSPVKTMYEIRIHA----------DRDWVFLRF------------------------ 190
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
RA +FL+H VR ++G L AVG G S + +L ++ + A+P GL L
Sbjct: 191 ------RASAFLHHMVRNLMGCLVAVGRGRYPASWLPEVLASRQRSMAAPTFMPDGLYLA 244
Query: 351 FVKYDLPED-DQTDAAESL 368
V+Y P D A SL
Sbjct: 245 GVRYPEPYGIPAADPAGSL 263
>gi|269958752|ref|YP_003328539.1| tRNA pseudouridine synthase A [Anaplasma centrale str. Israel]
gi|269848581|gb|ACZ49225.1| tRNA pseudouridine synthase A [Anaplasma centrale str. Israel]
Length = 247
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 143/299 (47%), Gaps = 56/299 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQ--LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
RY VEY GT F G Q+Q + R+V +E+A ++ Q V++ + RTDAGVHA
Sbjct: 2 RYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQYVTVFAAGRTDAGVHALGQ 61
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ V++ A+NH+L+S+ + + + FHARF A++
Sbjct: 62 VVHFDLN-----------TSLQDYVIKNALNHYLRSDM-VSILSLEEAAEGFHARFSAKK 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVG-CHDFSSFRASGCQANS 235
R Y Y+I++ P ++ R WHV ++L + MQEA +VG DF+SFRA CQ+ S
Sbjct: 110 RHYMYKIVNRDAP-PCLDRLRMWHVPKQLSVSDMQEAASHMVGEKKDFASFRAKECQSKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+D ++ G+N+F V
Sbjct: 169 SVRTVD------------------------------RIDCVREGNNIF----------VH 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+SFL+ QVR+IVG L G G S V IL+ K AA AP GL L V+Y
Sbjct: 189 VSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHGLYLVLVEY 247
>gi|355714607|gb|AES05058.1| pseudouridylate synthase-like 1 [Mustela putorius furo]
Length = 244
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 136/265 (51%), Gaps = 42/265 (15%)
Query: 98 PVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIM 157
PV ++SSRTDAGVHA N H+DV+R S + PP V+ A+N L+ +
Sbjct: 11 PVKFTISSRTDAGVHALCNAAHLDVQRRSGQ------PPFSPEVLAEALNAHLRHPAIRV 64
Query: 158 VTDVRC--VPSDFHARFRAQERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQ 211
+ R VP DFHAR A RTY YR+++G + LSVFE++R W + + LD+ AMQ
Sbjct: 65 LQAFRVPGVPGDFHARHAATSRTYLYRLVTGCHRHDHLSVFERNRCWALQADCLDVDAMQ 124
Query: 212 EACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSS 271
EA + L+G HDFS+F+++G A S +RTL V+ D S
Sbjct: 125 EAAQHLLGTHDFSAFQSAGSPATSSVRTLRRASVAP--------------------DPGS 164
Query: 272 KLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILK 331
+P F + + A+SFLY QVR + VL AVG G L + V+ IL+
Sbjct: 165 PFILPQENRLQF--------WNLEFEAQSFLYKQVRRMTAVLVAVGLGTLMPAQVKVILE 216
Query: 332 AKTVTA--ASPMAPACGLSLGFVKY 354
++ + +APA GL L V Y
Sbjct: 217 SRDPLGRHQARVAPAHGLFLKSVLY 241
>gi|292670303|ref|ZP_06603729.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541]
gi|292648034|gb|EFF66006.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541]
Length = 260
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 140/312 (44%), Gaps = 58/312 (18%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVV-GVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
+R + + + Y GTR+ G Q+Q V LE A + G+ V ++ + RTDAGVHA
Sbjct: 4 RRARNLALKIAYDGTRYHGFQRQSPPVVAVQNALEAALAEVCGETVELAAAGRTDAGVHA 63
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V + + R P E LP RAVN L DI VTD DF AR
Sbjct: 64 CGQVVNFFTD---GRIPTERLP--------RAVNGLLPP--DIAVTDAWEAARDFSARHS 110
Query: 174 AQERTYFYRI--LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
A+ + Y YR+ + P P F ++ AW + LD+ AM+ A +LVG HD+SSFRA+G
Sbjct: 111 AKGKAYVYRMEQCTVPNP---FTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSFRAAGG 167
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
SP+RT+DE+ + + + +L G+
Sbjct: 168 APMSPVRTIDEIRLED--------------------EGEGRLSCYLHGNG---------- 197
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
FLYH VR I+ + +VG ++V I A+ ASP APACGL L
Sbjct: 198 ---------FLYHMVRNIMSTVVSVGQERISVGRFAEIFAARDRRLASPTAPACGLYLLH 248
Query: 352 VKYDLPEDDQTD 363
V YD D
Sbjct: 249 VDYDAAPQKSAD 260
>gi|255526613|ref|ZP_05393520.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
gi|296187301|ref|ZP_06855697.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
gi|255509721|gb|EET86054.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
gi|296048172|gb|EFG87610.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
Length = 247
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 54/298 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
I+ + +EY GT + G Q+Q N ++ +EEA + ++ SSRTDAGVHA
Sbjct: 4 IKNIKLVIEYDGTNYCGWQRQDNAESIQQKVEEAIERATKVFSKVTGSSRTDAGVHAEGF 63
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
VC+ E +PP + + A+N FL DI++ + + V +FH+RF +
Sbjct: 64 VCNFFTE--------SSIPPEN---FKEALNVFLPE--DIVIIESKEVDKEFHSRFNSIG 110
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+ Y Y +L+G ++ ++ ++ + L++ M+EA K +G HDFS+F+ SG +
Sbjct: 111 KKYVYTVLTGSHRPAI-RRNYVYYFNKNLNIGQMKEAAKYFLGTHDFSAFKKSGSSVKTS 169
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IRT+ EL++ I + + +I
Sbjct: 170 IRTIKELNID--------------------------------------IDGNYIKFSIIG 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+IVG L VGT D+++I+ +K + A APACGL+L V Y
Sbjct: 192 DG--FLYNMVRIIVGTLLDVGTNRFNPEDIDKIISSKNRSNAGKSAPACGLTLEKVFY 247
>gi|358065580|ref|ZP_09152117.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
gi|356696219|gb|EHI57841.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
Length = 242
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 137/295 (46%), Gaps = 55/295 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+ V+Y GTR+ G Q+Q N T+ LE K G+ V I S RTDAGVHA V +V
Sbjct: 1 MVVQYDGTRYDGWQRQGNTENTIQSKLESVIGKMTGEDVEIIGSGRTDAGVHATGQVANV 60
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
++ +++ P E+ + VN +L DI VT + P FH+R A + Y
Sbjct: 61 HMD--TEKTPQEI---------KDYVNQYLPD--DIAVTQLEEAPDRFHSRLNATGKVYT 107
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y I + P+ SVF++ + + +LD+ AM++A K+L G HDF SF ++ S +RT+
Sbjct: 108 YWIETAPK-CSVFQRKYIYTLGRKLDVEAMRQAAKLLCGTHDFKSFCSNKNMKKSTVRTV 166
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
+ + E + E+
Sbjct: 167 KTISIQE----------------------------------------RGSGLEIHVIGDG 186
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY+ VR++VG L VG G+ T + IL+AK AA APACGL L V YD
Sbjct: 187 FLYNMVRILVGTLIEVGLGKRTPDSMREILEAKDRQAAGATAPACGLFLTAVMYD 241
>gi|162147913|ref|YP_001602374.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl
5]
gi|209542530|ref|YP_002274759.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl
5]
gi|161786490|emb|CAP56072.1| putative tRNA pseudouridine synthase A [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530207|gb|ACI50144.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl
5]
Length = 258
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 143/306 (46%), Gaps = 56/306 (18%)
Query: 53 TNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSS-RTDAGV 111
T +QR+ + +EY G F G Q+Q+ +V VLEEA + V S+++ RTDAGV
Sbjct: 2 TAPSLQRWAVRIEYDGRPFVGWQRQITGLSVQQVLEEAASRLASGRVVPSITAGRTDAGV 61
Query: 112 HAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSD--FH 169
HA H+D PG+V + S VR A+N ++ V +R P D +
Sbjct: 62 HATGQAAHLDF-------PGDVR--LNDSTVRDALNFHMKP---YPVAVLRACPVDTEWS 109
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
ARF A R+Y YRIL+ + R W V LD AM A ++L+G HDF+SFRAS
Sbjct: 110 ARFSAIRRSYRYRILNR-RSRPTLDDGRVWLVKRTLDEAAMARAARLLLGRHDFTSFRAS 168
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
CQA SP+RTLD L G+ ++
Sbjct: 169 ACQARSPLRTLDRL----------------------------------------GVVRQG 188
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
+ A ARSFL+HQVR +VG LK VG G V L A AA P AP GL L
Sbjct: 189 EEIVIEAEARSFLHHQVRNMVGTLKLVGEGLWAPDRVAAALAACDRRAAGPTAPPDGLYL 248
Query: 350 GFVKYD 355
V YD
Sbjct: 249 TGVGYD 254
>gi|429736840|ref|ZP_19270716.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429153820|gb|EKX96585.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 258
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 144/310 (46%), Gaps = 58/310 (18%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVV-GVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
R + + V Y GT + G Q+Q V VLE A K + V ++ + RTDAGVHA
Sbjct: 4 RARNIALKVAYAGTNYHGFQRQTPPVVAVQNVLERALAKVCAEEVELAAAGRTDAGVHAY 63
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V + + R P + LP RAVN L DI+VT+ DF AR A
Sbjct: 64 GQVVNFFTD---GRIPVKRLP--------RAVNGLLPP--DIVVTEAWEAARDFSARHSA 110
Query: 175 QERTYFYRI--LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+ Y YR+ + P+P F ++ AW + + LD+ AM+ A +LVG HD+SSFRA+G
Sbjct: 111 TGKAYVYRLEQCTVPDP---FTRNYAWQIFQPLDVEAMRAALAMLVGTHDYSSFRAAGGA 167
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
SP+RTLDE+ ++E + + +L G+
Sbjct: 168 PMSPVRTLDEIRLTE--------------------EGAGRLSCYLHGNG----------- 196
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
FLYH VR I+ + +VG G ++V I + ASP APACGL L V
Sbjct: 197 --------FLYHMVRNIMSTVVSVGIGRISVERFGEIFAVRDRRFASPTAPACGLYLVSV 248
Query: 353 KYDLPEDDQT 362
Y+ D ++
Sbjct: 249 DYEEEADGKS 258
>gi|225630801|ref|YP_002727592.1| tRNA pseudouridine synthase A [Wolbachia sp. wRi]
gi|254764876|sp|C0R4F9.1|TRUA_WOLWR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|225592782|gb|ACN95801.1| tRNA pseudouridine synthase A [Wolbachia sp. wRi]
Length = 245
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 140/297 (47%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I VEY G+ FSG QKQ + ++ +E A F G+ +++ RTDAGVHA V
Sbjct: 2 RYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+E K E+ +R A+N+ L+S I+V + V FHARF A++R
Sbjct: 62 AHFDME-----KECELYR------IRNAINYHLKSI-PIVVLNAEVVDDAFHARFSAKKR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI++ P + E W V LD+ M+EA K L+G HD SSFR+ C A +PI
Sbjct: 110 YYEYRIVNRYAP-AALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPI 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+D++ + + G+++ +
Sbjct: 169 RTIDDIDIVQ------------------------------NGNHI----------HIKIS 188
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFL++QVR+I G L G ++ IL +AA AP GL L + Y
Sbjct: 189 AISFLHNQVRIIAGTLVEFGKNRTNPQEMLHILSQCKRSAAGVTAPPFGLYLVKIDY 245
>gi|406706813|ref|YP_006757166.1| pseudouridylate synthase I [alpha proteobacterium HIMB5]
gi|406652589|gb|AFS47989.1| pseudouridylate synthase I [alpha proteobacterium HIMB5]
Length = 246
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 145/296 (48%), Gaps = 52/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY I +EY+GT F G Q Q TV G+L++ K + + + + S RTDAGVHA
Sbjct: 3 RYQILIEYVGTNFKGWQVQKKGITVQGLLQQEISKILKEKIKVYGSGRTDAGVHAIQQSA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D E+ D ++N F+ ++ ++ S+FHARF A++R
Sbjct: 63 HFDTS-------NEI---KDIKKFFNSLNFFINPYQVSLLKLIKK-NSNFHARFSAKKRL 111
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I++ + V EK R+WHV ++LD++ M++ + L+G DFS+FRAS C A SPIR
Sbjct: 112 YKYVIIN-RTSMPVIEKRRSWHVRKDLDIQLMKKGAQKLLGKKDFSTFRASSCNAKSPIR 170
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+++ VS K+ + ++
Sbjct: 171 TMEKATVSS----------------------------------------KNNKIIIKFQS 190
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+SFL QVR +VG LK +G + TVS +++K+K +P APA GL L V Y
Sbjct: 191 QSFLQQQVRSMVGCLKYLGEKKWTVSQFTKVIKSKNRKLCAPPAPAEGLFLERVFY 246
>gi|353328255|ref|ZP_08970582.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont wVitB of
Nasonia vitripennis]
Length = 245
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 139/297 (46%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I +EY G+ FSG QKQ + ++ +E A F G+ VS+ RTD GVHA V
Sbjct: 2 RYKITIEYNGSGFSGWQKQQHSANSIQETIENAIFNFSGERVSLHCGGRTDTGVHALGQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H ++ER + +R +N+ L++ I+V V FHARF A++R
Sbjct: 62 AHFNMER-----------QFELYRIRNGINYHLKAI-PIVVLSAEAVDDAFHARFSAKKR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI++ P + E W V LD+ M+EA + L+G H+ SSFR+ CQA +P+
Sbjct: 110 YYEYRIINRYAP-AALEIGYVWQVFNPLDINIMREAARHLLGKHNLSSFRSKDCQATNPV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+D++ + + GS+++ +
Sbjct: 169 RTIDDIDIVQ------------------------------NGSHIY----------IKIS 188
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFL++QVR+IVG L G ++ IL AA AP+ GL L + Y
Sbjct: 189 AISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILSQCKRNAAGVTAPSHGLYLVKIDY 245
>gi|398819147|ref|ZP_10577708.1| pseudouridylate synthase I [Bradyrhizobium sp. YR681]
gi|398230150|gb|EJN16211.1| pseudouridylate synthase I [Bradyrhizobium sp. YR681]
Length = 245
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 132/296 (44%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G F G Q Q +V G LE A G + + + RTDAGVHA V
Sbjct: 3 RYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGANLRVHGAGRTDAGVHARGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD+E+ PP R +N L+ I V + V F ARF A +R
Sbjct: 63 HVDIEK--------QFPP---GRFRDGLNAHLRPH-PIAVLEAEIVADSFEARFSAVKRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YR+++ L++ + AW V LD AM A + L+G HDF++FR + CQA SP +
Sbjct: 111 YRYRVVNTRANLAL-DIGHAWRVPRRLDSDAMHAAAQRLLGKHDFTTFRDAECQAKSPEK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD+L V + R +I A
Sbjct: 170 TLDQLDVL----------------------------------------RDGREITIITSA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+ QVR +VG L VG G T D+ L+A+ A +AP GL L V Y
Sbjct: 190 RSFLHSQVRSMVGSLVWVGEGRWTADDLSAALEARNRAACGIVAPPDGLYLMQVDY 245
>gi|435853007|ref|YP_007314326.1| pseudouridylate synthase I [Halobacteroides halobius DSM 5150]
gi|433669418|gb|AGB40233.1| pseudouridylate synthase I [Halobacteroides halobius DSM 5150]
Length = 247
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 141/296 (47%), Gaps = 61/296 (20%)
Query: 64 VEYIGTRFSGSQKQ---LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV--C 118
+ Y GT + G Q+Q + TV G LE + I Q V I +SRTDA VHA V C
Sbjct: 8 IAYDGTNYHGFQRQPHQTHVATVQGRLESTIKQVIKQEVDIIGASRTDADVHAEGQVFNC 67
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
++D +P S+ A+N L + DI++ D V + FHAR+ +Q +
Sbjct: 68 YLDCS----------IPTGKFSL---ALNTRLPN--DIVILDTTEVDAKFHARYHSQGKK 112
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y+Y++ P S F ++ A+HV LDL A+++A L G HDFSSFRA+GC A+SPIR
Sbjct: 113 YYYQVYYDQFP-SPFLRNYAYHVYHHLDLDAIKDALPYLEGKHDFSSFRAAGCNASSPIR 171
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+ L + + + FS ++G
Sbjct: 172 TIHNLSMEQKDNLITFS--------------------------IYG-------------- 191
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY VR IVG L VG G+L + ++ IL AK AA P AP GL L + Y
Sbjct: 192 DGFLYKMVRTIVGTLIYVGYGKLAPAQLKEILAAKDRKAAGPTAPGYGLFLEEIYY 247
>gi|227891575|ref|ZP_04009380.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ATCC 11741]
gi|227866722|gb|EEJ74143.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ATCC 11741]
Length = 256
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 143/308 (46%), Gaps = 60/308 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP--VSISLSSRTDAGVHAAS 115
QR+ + + Y GT F+G Q Q N RTV VLE+A +K + +++ S RTD+GVHA
Sbjct: 3 QRFKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAINKMSKKDEYITVYGSGRTDSGVHALG 62
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSV--VRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D PH S + R +N L D V D + VP+DFH+R+
Sbjct: 63 QVVHFDF-------------PHPISAKGMLRGLNSMLPL--DCEVVDCKIVPNDFHSRYT 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+ Y YR+ G E ++ F++ H LD+ ++EA + G HD+SSF ASG QA
Sbjct: 108 THGKRYLYRVSRG-EFVNPFKRLYTGHYKYPLDIEKIKEAMPDVEGTHDYSSFVASGSQA 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +RT+ E V E +N D V N
Sbjct: 167 KSHVRTIYEAKVYE-------DKVN-DEIVFEFYGN------------------------ 194
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+QVR++V L +G G+ V D R+ K K + A APA GL L V
Sbjct: 195 ------GFLYNQVRIMVATLLEIGNGKRPVHDFLRLYKVKDRSQARQTAPASGLYLKEVY 248
Query: 354 YDLPEDDQ 361
YD E+D+
Sbjct: 249 YD--EEDE 254
>gi|319950123|ref|ZP_08024062.1| tRNA pseudouridine synthase A [Dietzia cinnamea P4]
gi|319436208|gb|EFV91389.1| tRNA pseudouridine synthase A [Dietzia cinnamea P4]
Length = 380
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 158/325 (48%), Gaps = 52/325 (16%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAG 110
MST +R + V Y GT FSG +Q RTV GVLE + PV ++++ RTDAG
Sbjct: 1 MST----RRIRLDVAYDGTDFSGWARQPGLRTVCGVLEAELSTVLRHPVVLTVAGRTDAG 56
Query: 111 VHAASNVCHVDVE--RISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
VHA + VCH+DV+ + +R L ++VRR + L + DI V D R VP +F
Sbjct: 57 VHARAQVCHLDVDPAWLDQRS----LDGRPEALVRR-LARLLPA--DIAVMDGRWVPDEF 109
Query: 169 HARFRAQERTYFYRILSGP---EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSS 225
ARF A R Y YR+ + P EP+ + AW T DL A++ A + L+G HDF++
Sbjct: 110 DARFSALRRHYEYRLTTAPWGAEPIRARDTA-AW--TRTADLEAVRAASERLLGLHDFAA 166
Query: 226 FRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGI 285
F C+ T+ EL E + D+P + + +S
Sbjct: 167 F----CRRREGATTIRELQRFEWRTEP--DPRGPDAPGAAEVWTAS-------------- 206
Query: 286 RKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPAC 345
A +F + VR +VG + AVG G ++ + +L ++A P+APAC
Sbjct: 207 ----------VSADAFCWSMVRSLVGAVMAVGEGRRSLEWISGLLAETERSSAVPVAPAC 256
Query: 346 GLSLGFVKYDLPEDDQTDAAESLET 370
GLSL + D P DD+ AA +L T
Sbjct: 257 GLSL--IGVDYPADDEL-AARNLVT 278
>gi|422344507|ref|ZP_16425432.1| tRNA pseudouridine synthase A [Selenomonas noxia F0398]
gi|355376576|gb|EHG23818.1| tRNA pseudouridine synthase A [Selenomonas noxia F0398]
Length = 267
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 138/312 (44%), Gaps = 58/312 (18%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVV-GVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
+R + + + Y GTR+ G Q+Q V LE A + G+ V ++ + RTDAGVHA
Sbjct: 11 RRARNLALKIAYDGTRYHGFQRQSPPVVAVQNALEAALAEVCGETVELAAAGRTDAGVHA 70
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V + + R P E LP RAVN L DI VTD DF AR
Sbjct: 71 CGQVVNFFTD---GRIPTERLP--------RAVNGLLPP--DIAVTDAWEAARDFSARHS 117
Query: 174 AQERTYFYRILSG--PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
A+ + Y YR+ P P F ++ AW + LD+ AM+ A +LVG HD+SSFRA+G
Sbjct: 118 AKGKAYVYRMEQCIVPNP---FTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSFRAAGG 174
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
SP+RT+DE+ + + L ++ +
Sbjct: 175 APMSPVRTIDEIRLEDEGEGRLSCYLHGN------------------------------- 203
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
FLYH VR I+ + +VG ++V I A+ ASP APACGL L
Sbjct: 204 --------GFLYHMVRNIMSTVVSVGQERISVGRFAEIFAARDRRLASPTAPACGLYLLH 255
Query: 352 VKYDLPEDDQTD 363
V YD D
Sbjct: 256 VDYDAAPQKAAD 267
>gi|291234813|ref|XP_002737344.1| PREDICTED: MGC80334 protein-like [Saccoglossus kowalevskii]
Length = 520
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 115/197 (58%), Gaps = 17/197 (8%)
Query: 59 RYLIAVEYIGTRFSGS-QKQLNCRTVVGVLEEAFHKFIGQPVS-ISLSSRTDAGVHAASN 116
RYL+ + Y+GT F G Q TV V+E A H Q + + SSRTDAGVHA +N
Sbjct: 3 RYLLYISYLGTNFRGVVQTNSTSPTVQRVIEGALHTLKPQEAAKLYFSSRTDAGVHALNN 62
Query: 117 VCHVDVERISKRKP--GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
HVD R + ++P GEVL +++ N L ++ DI + DV+ VP +FHARF+A
Sbjct: 63 TAHVDFVRRNNQQPFSGEVL----KTILN---NKLLIAQQDIRINDVKKVPDEFHARFQA 115
Query: 175 QERTYFYRILSGP----EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASG 230
+ RTY YRI S + +FE R W V+ LD+ M++AC+V +G HDF++FR+
Sbjct: 116 KGRTYVYRIASNWNCALNHIPLFENHRCWMVSYRLDIEKMKQACEVFIGTHDFAAFRSKN 175
Query: 231 CQA--NSPIRTLDELHV 245
+ S +RT+D +++
Sbjct: 176 NKNVHKSTVRTIDSINI 192
>gi|373450264|ref|ZP_09542284.1| tRNA pseudouridine synthase A [Wolbachia pipientis wAlbB]
gi|371932515|emb|CCE77282.1| tRNA pseudouridine synthase A [Wolbachia pipientis wAlbB]
Length = 245
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 139/297 (46%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I +EY G+ FSG QKQ + ++ +E A F G+ VS+ RTDAGVHA V
Sbjct: 2 RYKITIEYNGSGFSGWQKQQHSANSIQETIENAIFNFSGERVSLHCGGRTDAGVHALGQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H ++ER + +R +N+ L++ I+V V FHARF A++R
Sbjct: 62 AHFNMER-----------QFELYRIRNGINYHLKAI-PIVVLGAEAVDDAFHARFSAKKR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI++ P + E W V LD+ M+EA + L+G H+ SSFR+ CQA +P+
Sbjct: 110 CYEYRIINRYAP-AALEIGYVWQVFNPLDVNIMREAARHLLGKHNLSSFRSKDCQATNPV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+D++ + + GS+++ +
Sbjct: 169 RTIDDIDIVQ------------------------------NGSHIY----------IKIS 188
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFL++QVR+IVG L G ++ IL AA AP GL L + Y
Sbjct: 189 AISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILSQCKRNAAGVTAPPHGLYLVKIDY 245
>gi|326390628|ref|ZP_08212183.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW
200]
gi|325993306|gb|EGD51743.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW
200]
Length = 244
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 139/294 (47%), Gaps = 54/294 (18%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+I VEY GT + G Q Q N TV VL++A K G+ V++ +SRTD GVHA V +
Sbjct: 5 MIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 64
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ + + P E LP A+N L DI+V + V FHAR+ A+ + Y
Sbjct: 65 ---KTNTKIPAEKLP--------YALNSVLPD--DIVVVQAKDVEDSFHARYSAKRKRYK 111
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y IL+ + ++ WH+ L + M++A L+G HDFS+F+ASG S IRT+
Sbjct: 112 YIILNRKFQMPTM-RNYCWHIDYPLSIEKMKKAASYLIGTHDFSAFKASGSSKTSTIRTV 170
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
+L +I +D ++ + A
Sbjct: 171 YDL------------TIEKDEDFIN----------------------------IEIEANG 190
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+IVG L VG G++ V++V IL ++ T A AP GL L + Y
Sbjct: 191 FLYNMVRIIVGTLSYVGLGKIEVNEVYDILTSRDRTKAGITAPPQGLYLIKIMY 244
>gi|400288107|ref|ZP_10790139.1| tRNA pseudouridine synthase A [Psychrobacter sp. PAMC 21119]
Length = 279
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 142/315 (45%), Gaps = 56/315 (17%)
Query: 47 VTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSR 106
+ + S + I IAVE++GT + G Q+Q V LE A K +PV + + R
Sbjct: 4 IKHIASEDSPIYTLAIAVEFLGTHYHGWQRQREVLGVQQALETAIGKVANEPVEVIAAGR 63
Query: 107 TDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPS 166
TDA VHA++ + H +P S+ R VN L DI + ++ +P+
Sbjct: 64 TDASVHASNMIAHFTTR---AYRP--------SNNWLRGVNSLLPD--DIALRWIQPMPA 110
Query: 167 DFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSF 226
DFHARF A R Y Y L+ + ++ H+ E LDL AMQ A +VG HDFSS+
Sbjct: 111 DFHARFGAIARRYRYITLNQAQRPAILNHQVT-HIYEPLDLAAMQLAAAEIVGIHDFSSY 169
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA+ CQ+N P+RT V LF+ +G VF I
Sbjct: 170 RAAACQSNQPVRT--------VSHARLFA---------------------HGQFIVFDI- 199
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
+A FL+H VR ++G L A+G L +D RIL K T A P A G
Sbjct: 200 ----------QADGFLHHMVRNLMGTLYAIGKHHLEPADFLRILAKKDRTIAPPTASGDG 249
Query: 347 LSLGFVKYDLPEDDQ 361
L F+ PE Q
Sbjct: 250 LY--FINAYYPERFQ 262
>gi|256847793|ref|ZP_05553238.1| tRNA pseudouridine synthase A [Lactobacillus coleohominis
101-4-CHN]
gi|256715482|gb|EEU30458.1| tRNA pseudouridine synthase A [Lactobacillus coleohominis
101-4-CHN]
Length = 253
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 141/299 (47%), Gaps = 55/299 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHAAS 115
RY I Y GT FSG Q Q + RT+ L+ ++ P +SI S RTDAGVHA +
Sbjct: 3 RYKITFAYDGTNFSGFQIQPHKRTIEQTLKTIVNRMAKNPDPAISIIGSGRTDAGVHALN 62
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D P + P S V RA+N Q DI+V V ++FHAR+ A
Sbjct: 63 QVAHFDF-------PYHI--PEQSMV--RALNS--QLPLDIIVKKAEIVSNEFHARYNAH 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ G E + F+++ H +D+ M A + LVG HDF+SF ASG QA S
Sbjct: 110 RKRYRYRVTQG-EFVDPFKRNYTAHFKYPVDIAHMNRAAQDLVGTHDFTSFVASGSQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
IRT+ E V + D V+ +E +
Sbjct: 169 NIRTIYEAKVYYE---------DHDHEVI---------------------------FEFV 192
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+QVR++V +L +G+G+ V DV+R+L A+ A APA GL L V Y
Sbjct: 193 GNG--FLYNQVRIMVALLLEIGSGQRPVDDVQRVLAARDRQEARMTAPASGLYLVNVDY 249
>gi|86747801|ref|YP_484297.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris HaA2]
gi|123293209|sp|Q2J2C4.1|TRUA_RHOP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|86570829|gb|ABD05386.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris HaA2]
Length = 245
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 137/298 (45%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE A G+ V + + RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPTLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ + P + +R A+N ++ I V V DF ARF A
Sbjct: 61 VAHVDIPK-----------PFRADKLRDALNAHVRPH-PIAVLSAELVADDFEARFSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L+ E + W V + LD AM A +VL+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRIVNRRSNLA-LELGKVWRVPKPLDTDAMHRAAQVLIGKHDFTTFRDTECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD VL + N + ++I
Sbjct: 168 AKTLD---------------------VLDVVRNGDAV-------------------DIIT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARS+L+ QVR +VG L VG G T D+ L A+ +A P+AP GL L V Y
Sbjct: 188 NARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPDGLYLVQVDY 245
>gi|87200906|ref|YP_498163.1| tRNA pseudouridine synthase A [Novosphingobium aromaticivorans DSM
12444]
gi|87136587|gb|ABD27329.1| tRNA pseudouridine synthase A [Novosphingobium aromaticivorans DSM
12444]
Length = 254
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 139/297 (46%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +E+ G + G Q+Q + +V +EEA H G+ V+++ + RTD GVHA
Sbjct: 7 RFALTLEWNGGPYMGFQRQSHGPSVQQAVEEAVHSVTGEAVALNAAGRTDTGVHALGMRA 66
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
H D+ R D + A+N L+ G + V D V D+HARF R
Sbjct: 67 HFDLSR-----------AFDPFRMMEALNARLRLAGHPVAVLDCIEVAPDWHARFSCTGR 115
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI++ PL++ + RAW + + LD M EA ++LVG HDF++FR+ CQ+ SP+
Sbjct: 116 AYEYRIINRRAPLTL-DLGRAWRIAKPLDETVMHEAAQLLVGHHDFTTFRSVHCQSASPL 174
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V R+ V A
Sbjct: 175 KTLDRLDV----------------------------------------RRDGDRVIVEAA 194
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L VG G+ +V+ + L AK + AP GL +Y
Sbjct: 195 ARSFLHHQVRSMVGCLALVGQGQWSVAQLGEALAAKDRSRLGLNAPPEGLYFVSAQY 251
>gi|306846234|ref|ZP_07478796.1| tRNA pseudouridine synthase A [Brucella inopinata BO1]
gi|306273485|gb|EFM55346.1| tRNA pseudouridine synthase A [Brucella inopinata BO1]
Length = 207
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 123/258 (47%), Gaps = 53/258 (20%)
Query: 101 ISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVT 159
+S + RTDAGVHA + V HVD+ + + VR AVN H + +E I +
Sbjct: 1 MSAAGRTDAGVHATAQVAHVDLAK-----------DWGAGKVRDAVNAHLVMAEERISIL 49
Query: 160 DVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVG 219
+V F ARF A+ R Y YRI + PL+V RAW V ++LD AM EA + L+G
Sbjct: 50 NVEKTTDTFDARFSARARHYLYRIHNRRAPLAV-NYQRAWWVQKQLDADAMHEAAQRLLG 108
Query: 220 CHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGG 279
HDF++FRA+ CQA SP++TLD L V+ NG
Sbjct: 109 EHDFTTFRATQCQAKSPVKTLDRLDVTR-----------------------------NGD 139
Query: 280 SNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAAS 339
E+ ARSFL++QVR G L VG G T D++ L+A+ A
Sbjct: 140 -----------MVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACG 188
Query: 340 PMAPACGLSLGFVKYDLP 357
+AP GL L V Y P
Sbjct: 189 QVAPPYGLYLIGVDYAFP 206
>gi|345873079|ref|ZP_08824999.1| tRNA pseudouridine synthase A [Thiorhodococcus drewsii AZ1]
gi|343917563|gb|EGV28358.1| tRNA pseudouridine synthase A [Thiorhodococcus drewsii AZ1]
Length = 260
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 128/302 (42%), Gaps = 66/302 (21%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ VEY GT F G Q Q RTV LE A + PV+I + RTDAGVH + H +
Sbjct: 1 MGVEYDGTDFHGWQTQSGVRTVQATLEAAVGRVANHPVTIHSAGRTDAGVHGLEQILHFE 60
Query: 122 V-----ERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
ER LPP D+ V VP DFHARF A
Sbjct: 61 TSAARSERSWVLGTNVNLPP------------------DVAVRWAHPVPEDFHARFSAMA 102
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y+I+ S ++ RA V E LDL M+EA LVG HDFSSFRA CQA SP
Sbjct: 103 RHYRYQIMV-RRTRSALQRSRAVWVHEALDLGCMREAASALVGEHDFSSFRAVSCQAKSP 161
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IR + L V E +D + S +G
Sbjct: 162 IRRIHYLDVLE-----------RDGLI------SLHVG---------------------- 182
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
A FL+H VR I GVL A+G E +V +L + T AP GL FV+ D
Sbjct: 183 -ANGFLHHMVRNIAGVLIAIGRQEASVDWTRELLDLRDRTLGGVTAPPQGLY--FVRADY 239
Query: 357 PE 358
PE
Sbjct: 240 PE 241
>gi|429214777|ref|ZP_19205940.1| tRNA pseudouridine synthase A [Pseudomonas sp. M1]
gi|428155063|gb|EKX01613.1| tRNA pseudouridine synthase A [Pseudomonas sp. M1]
Length = 332
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 24 EDHQNDSVEEEEEYPEEVPETRT-VTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CR 81
+ QN + +PE++ E + V EV + + + R + VEY G R+ G Q+Q +
Sbjct: 32 QSRQNSPLNCLFGWPEQLNEFESAVGEVATAD--VTRIALGVEYKGARYRGWQRQEDGVP 89
Query: 82 TVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD--VERISKRKPGEVLPPHDS 139
+V G LE A K +PVS+ + RTDA VH + V H D VER P +
Sbjct: 90 SVQGALERALSKVAAEPVSVMCAGRTDASVHGSGQVVHFDTRVER-----------PLKA 138
Query: 140 SVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAW 199
V+ N DI VT + +P+DFHARF A R Y Y I + P + ++ W
Sbjct: 139 WVMGSNAN----LPADISVTWAKVMPADFHARFSAVARRYRYVIYNDPIRPAHMAEEVTW 194
Query: 200 HVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQ 259
+ LD+ M+ A + LVG HDF+SFRA CQA SPI+T+ L V E
Sbjct: 195 N-HRPLDVERMRAAAQKLVGTHDFTSFRAVQCQAKSPIKTVHHLQVLE------------ 241
Query: 260 DSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-ARARSFLYHQVRLIVGVLKAVGT 318
H + V+ RA +FL+H VR GVL VG
Sbjct: 242 -----------------------------HGRFIVLDVRANAFLHHMVRNFAGVLMTVGA 272
Query: 319 GELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY----DLPE 358
GE V+ +L A+ A A GL L V+Y +LP+
Sbjct: 273 GEREPEWVDEVLAARDRRAGGVTAHPFGLYLVRVEYPEAFELPQ 316
>gi|163857158|ref|YP_001631456.1| tRNA pseudouridine synthase A [Bordetella petrii DSM 12804]
gi|229557953|sp|A9IRL0.1|TRUA_BORPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|163260886|emb|CAP43188.1| pseudouridylate synthase I [Bordetella petrii]
Length = 268
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 140/300 (46%), Gaps = 56/300 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISL--SSRTDAGVHAA 114
+ R + + Y G+ + G Q Q + +TV LE A +F G S+ + RTD GVHAA
Sbjct: 1 MPRMALGLAYDGSSWQGWQTQPHRQTVQDTLEAALARFAGIDGSLPTVCAGRTDTGVHAA 60
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H+D R+ +R V R VN FL I V + VP DFHARF A
Sbjct: 61 MQVVHLDT-RLERRAESWV----------RGVNAFLPPS--IAVQWAQPVPDDFHARFSA 107
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ RTY Y + G ++ W + LD++AM++A L+G HDFSSFR+S CQA
Sbjct: 108 RSRTYLYLLWRGRVRPPLWAGRAGW-CFQPLDVQAMRQAASALLGEHDFSSFRSSQCQAR 166
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
P+RTL L I++ P L VF +
Sbjct: 167 HPVRTLHRL------------DIDERGPFL-----------------VFTL--------- 188
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RA +FL+H VR ++G L +G G V+ + +L A+ A+P A GL L ++Y
Sbjct: 189 --RANAFLHHMVRNLMGALLQIGQGRQPVAWMPAVLAARDRRLAAPTFAADGLYLSAIEY 246
>gi|237653725|ref|YP_002890039.1| tRNA pseudouridine synthase A [Thauera sp. MZ1T]
gi|237624972|gb|ACR01662.1| tRNA pseudouridine synthase A [Thauera sp. MZ1T]
Length = 265
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 138/316 (43%), Gaps = 58/316 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R ++ +EY G F G Q Q + RTV VLE A + G+PV + RTD GVHA++
Sbjct: 1 MRRIVLGLEYAGDAFCGWQSQAHGRTVQDVLERALAQIAGEPVRTHCAGRTDTGVHASAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D + +P +S R VN L ++V V DFHARF A E
Sbjct: 61 VAHFDTRAV---RP--------ASAWVRGVNALLPPA--VVVRWSTEVGDDFHARFLACE 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y + + P ++ W+ LD+ M A + LVG HDFSSFRA+GCQA +P
Sbjct: 108 RQYRYILHNAPTRPAMLAGRVGWY-HPALDVERMAAAAQCLVGTHDFSSFRAAGCQAKTP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+R + E V LF
Sbjct: 167 VRVMHEARVVRQGEYLLFDF---------------------------------------- 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY-- 354
RA FL+H +R +VG L VG G V+ + +L+A+ A+P GL L V Y
Sbjct: 187 RANGFLHHMIRNLVGALVYVGKGRYPVAWMRELLEARDRARAAPTFSPDGLYLCGVAYPP 246
Query: 355 --DLPEDDQTDAAESL 368
LP D + A L
Sbjct: 247 RWSLPGDGRIIALPQL 262
>gi|254492043|ref|ZP_05105220.1| tRNA pseudouridine synthase A [Methylophaga thiooxidans DMS010]
gi|224462740|gb|EEF79012.1| tRNA pseudouridine synthase A [Methylophaga thiooxydans DMS010]
Length = 259
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 134/296 (45%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT F G Q Q N RTV G LE+A + + + RTD GVHA + V
Sbjct: 2 RIALGIEYAGTDFCGWQNQPNTRTVQGELEKAASVVANHSIDVFAAGRTDTGVHALNQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + I + G +L +N L DI V ++ V +F+ARF A +R
Sbjct: 62 HFDTDAIRSER-GWLL----------GINANLPK--DINVAWMKPVDDEFNARFTAIKRR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y IL+ +V WH LD+ MQ A LVG HDFS+FRAS CQA SPI+
Sbjct: 109 YRYLILNRLSRSAVHHNRMWWH-HHPLDIERMQAAADQLVGKHDFSAFRASECQARSPIK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD++ V R++ V A
Sbjct: 168 TLDKITV----------------------------------------RRQQDCIAVDVEA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+SFL+H VR +VGV+ A+G G V +L++ + AP GL L V+Y
Sbjct: 188 KSFLHHMVRNLVGVMAAIGDGSKPVDWAGDVLRSVDRSQGGVTAPPQGLYLVDVEY 243
>gi|189023111|ref|YP_001932852.1| tRNA pseudouridine synthase A [Brucella abortus S19]
gi|189021685|gb|ACD74406.1| tRNA pseudouridine synthase [Brucella abortus S19]
Length = 207
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 124/258 (48%), Gaps = 53/258 (20%)
Query: 101 ISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVT 159
+S + RTDAGVHA + V HVD+ + + VR AVN H + ++ I +
Sbjct: 1 MSAAGRTDAGVHATAQVAHVDLAK-----------DWGAGKVRDAVNAHLVMADERISIL 49
Query: 160 DVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVG 219
+V F ARF A+ R Y YRI + PL+V + RAW V ++LD AM EA + L+G
Sbjct: 50 NVEKTTDTFDARFSARARHYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLG 108
Query: 220 CHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGG 279
HDF++FRA+ CQA SP++TLD L V+ NG
Sbjct: 109 EHDFTTFRATQCQAKSPVKTLDRLDVTR-----------------------------NGD 139
Query: 280 SNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAAS 339
E+ ARSFL++QVR G L VG G T D++ L+A+ A
Sbjct: 140 -----------MVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACG 188
Query: 340 PMAPACGLSLGFVKYDLP 357
+AP GL L V Y P
Sbjct: 189 QVAPPYGLYLVGVDYAFP 206
>gi|190571328|ref|YP_001975686.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018724|ref|ZP_03334532.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|238057739|sp|B3CMC1.1|TRUA_WOLPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|190357600|emb|CAQ55041.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995675|gb|EEB56315.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 245
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 138/297 (46%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I +EY G+ FSG QKQ + ++ +E A F G+ VS+ RTD GVHA V
Sbjct: 2 RYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGERVSLHCGGRTDTGVHALGQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H ++ER + +R +N+ L++ I+V V FHARF A++R
Sbjct: 62 AHFNMER-----------QFELYRIRNGINYHLKAI-PIVVLSAEAVDDAFHARFSAKKR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI++ P + E W V LD+ M+EA + L+G H+ SSFR+ CQA +P+
Sbjct: 110 YYEYRIINRYAP-AALEIGYVWQVFNPLDVNIMREAARHLLGKHNLSSFRSKDCQATNPV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+D++ + + GS+++ +
Sbjct: 169 RTIDDIDIVQ------------------------------NGSHIY----------IKIS 188
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFL++QVR+IVG L G ++ IL AA AP GL L + Y
Sbjct: 189 AISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILSQCKRNAAGITAPPHGLYLVKIDY 245
>gi|334345188|ref|YP_004553740.1| tRNA pseudouridine synthase A [Sphingobium chlorophenolicum L-1]
gi|334101810|gb|AEG49234.1| tRNA pseudouridine synthase A [Sphingobium chlorophenolicum L-1]
Length = 248
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 140/302 (46%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ VE+ G F G Q+Q + +V +E+A G+ I + RTDAGVH +
Sbjct: 1 MTRFAFTVEFDGRPFMGWQRQAHGPSVQQAIEDAIFAVSGERAVIHAAGRTDAGVHGIAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D+ + P ++ A+N L+ I + VP D+HARF
Sbjct: 61 RAHADIAK--DMAPFRLM---------EALNARLRPH-PIAILACEAVPDDWHARFSCVG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRI + PL+ +E W V + LD AMQEA ++LVG HDF++FR++ CQA SP
Sbjct: 109 RSYVYRIANRRAPLT-WENGLVWRVIQPLDTDAMQEAAQLLVGRHDFTTFRSAHCQAESP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V + +L + A
Sbjct: 168 VKTLDRLDVER---------------------SGDRLA-------------------IYA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G ++ D+E A+ A AP GL FV+
Sbjct: 188 EARSFLHHQVRSMVGCLALVGMGRWSIGDLEAARDARDRAALGLNAPPDGLY--FVRARY 245
Query: 357 PE 358
P+
Sbjct: 246 PD 247
>gi|90422327|ref|YP_530697.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB18]
gi|123089809|sp|Q21B58.1|TRUA_RHOPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|90104341|gb|ABD86378.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB18]
Length = 245
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 139/298 (46%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G + G Q Q N +V G LE A G+ V ++ + RTDAGVHA +
Sbjct: 1 MPRYKLIIEYDGAPYCGWQIQDNGPSVQGALETAVKAICGKFVRVNGAGRTDAGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + + PG +R +N L+ I V VP DF ARF A +
Sbjct: 61 VAHCDIAK--EFAPGR---------LRDGLNAHLRPH-PIGVLSAEIVPDDFEARFSAIK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + L++ + + W + LD AM A + LVG HDF++FR + CQA SP
Sbjct: 109 RHYVYRISNRRANLAL-QIGKVWRLPRRLDTDAMHAAAQRLVGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V G NV +I
Sbjct: 168 DKTLDQLDVIR------------------------------DGDNV----------SIIT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G + D+ L A+ TA P+AP GL L V Y
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARRRTACGPVAPPDGLYLVKVDY 245
>gi|198283837|ref|YP_002220158.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666580|ref|YP_002426474.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248358|gb|ACH83951.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518793|gb|ACK79379.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 271
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 138/308 (44%), Gaps = 58/308 (18%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
R R+ + +EY G F G Q+QL+ +V GV+E A + P+S+ ++ RTD GVHA
Sbjct: 8 RGTRWALGLEYDGNGFCGWQRQLDQDSVQGVVEAALSRVAQCPISVVVAGRTDTGVHALC 67
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + R+P + R N L + + + R VP FHARF A
Sbjct: 68 QVVHFDSPVL--RRPEAWV---------RGANTALPA--GVALRWARVVPDSFHARFSAT 114
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y Y IL+ E +++ AW + LD+ AMQ A + L+G HDFS+FRA+ CQA S
Sbjct: 115 ARRYRYVILNRREKSALWRNHTAW-IYSPLDVEAMQAAAQTLLGTHDFSAFRAAACQAKS 173
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+R L +L V ++ V
Sbjct: 174 PVRNLCQLRVV----------------------------------------RRGDLIAVD 193
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY- 354
A A FL+H VR +VGVL A+G + V +L ++ A AP GL +Y
Sbjct: 194 AEANGFLHHMVRNLVGVLIAIGKADRPVDWAAEVLASRDRCRAGVTAPPGGLYFVAPRYP 253
Query: 355 ---DLPED 359
LP D
Sbjct: 254 AEFGLPVD 261
>gi|392954419|ref|ZP_10319970.1| tRNA pseudouridine synthase A [Hydrocarboniphaga effusa AP103]
gi|391857076|gb|EIT67607.1| tRNA pseudouridine synthase A [Hydrocarboniphaga effusa AP103]
Length = 259
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 141/303 (46%), Gaps = 56/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ AVEY+GT +SG Q Q + +V LE A K PV++S + RTD GVHA S
Sbjct: 1 MTRWAAAVEYLGTAYSGWQSQSHAPSVQAALEAALSKVAAHPVAVSAAGRTDTGVHAFSQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H D E ++R L +S++ D+ + V+ V +DFHAR A
Sbjct: 61 IVHFDSE--ARRSDYAWLLGTNSNLPE-----------DVSLRWVQPVRADFHARHSAIA 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y I + ++ EK W + LD AM A + LVG DFS+FR S CQ+N+P
Sbjct: 108 RRYRYVIHNSRSRSALLEKRATW-INWTLDAEAMHRAAQALVGELDFSAFRGSECQSNTP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+R + ++ G+R++ +
Sbjct: 167 MRCVTDI----------------------------------------GVRREGDFVLLSI 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RA +FL+H VR I G L VG G+ + V ++L ++ T A APA GL FV D
Sbjct: 187 RANAFLHHMVRNIAGTLIEVGQGKQPEAWVAQVLASRDRTLAGMNAPAAGLY--FVAADY 244
Query: 357 PED 359
P++
Sbjct: 245 PDE 247
>gi|42520874|ref|NP_966789.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|51316700|sp|Q73G93.1|TRUA_WOLPM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|42410614|gb|AAS14723.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 245
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 141/297 (47%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I VEY G+ FSG QKQ + ++ +E A F G+ V++ RTDAGVHA V
Sbjct: 2 RYKITVEYNGSNFSGWQKQQHSANSIQEKIENAIFNFSGEKVTLYCGGRTDAGVHALGQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+E+ + +R A+N+ L+S I+V + V FHARF A++R
Sbjct: 62 AHFDMEK-----------EFELYRIRNAINYHLKSI-PIVVLNAEVVDDAFHARFSAKKR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI++ P + E W V LD+ M+EA K L+G HD SSFR+ CQA +PI
Sbjct: 110 YYEYRIVNRYAP-AALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCQAANPI 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+D++ + + G+++ +
Sbjct: 169 RTIDDIDIIQ------------------------------NGNHI----------HIKIS 188
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFL++QVR+IVG L G ++ IL +AA AP GL L + Y
Sbjct: 189 AISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILNQCKRSAAGVTAPPFGLYLVKIDY 245
>gi|93006392|ref|YP_580829.1| tRNA pseudouridine synthase A [Psychrobacter cryohalolentis K5]
gi|92394070|gb|ABE75345.1| tRNA pseudouridine synthase A [Psychrobacter cryohalolentis K5]
Length = 280
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 148/322 (45%), Gaps = 62/322 (19%)
Query: 44 TRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQPVS 100
T ++TE + I IA+E++GT + G Q+Q R V+GV LE A +PV
Sbjct: 2 TISMTENNEAKRPIYTLAIAIEFLGTHYHGWQRQ---REVLGVQEALETAISTVANEPVE 58
Query: 101 ISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTD 160
+ + RTD+ VHA + + H P H+ R VN L DI +
Sbjct: 59 VIAAGRTDSSVHAGNMIAHFVTHAYR--------PSHNW---LRGVNSLLPD--DIALRW 105
Query: 161 VRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGC 220
V+ +P+DFHARF A R Y Y L+ + ++ H+ E LDL+AMQ A +VG
Sbjct: 106 VQPMPADFHARFAAIARRYRYITLNQTQRPAILNHQVT-HIHEPLDLKAMQLAAADIVGT 164
Query: 221 HDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGS 280
HDFSS+RA+ CQ+N P+R H+S LF+ +G
Sbjct: 165 HDFSSYRAAACQSNQPVR-----HISH---ANLFA---------------------HGQF 195
Query: 281 NVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASP 340
VF I +A FL+H VR ++G L A+G EL +D IL K T A P
Sbjct: 196 IVFDI-----------QADGFLHHMVRNLMGTLYAIGRHELEPADFLNILAKKDRTIAPP 244
Query: 341 MAPACGLSLGFVKYDLPEDDQT 362
A GL F+ PE QT
Sbjct: 245 TASGDGLY--FINAYYPEHFQT 264
>gi|168186842|ref|ZP_02621477.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund]
gi|169295253|gb|EDS77386.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund]
Length = 245
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 132/296 (44%), Gaps = 59/296 (19%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVG-VLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+ ++Y GTR+ G QK N T + +E ++ +G+ VS+ S RTDAGVHA V +
Sbjct: 6 LTIQYDGTRYKGWQKLGNNDTTIQHKIESVLNELLGEKVSLMASGRTDAGVHANMQVANF 65
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE--GDIMVTDVRCVPSDFHARFRAQERT 178
DS + + +L DI+VT V +FH+R+ +E+
Sbjct: 66 KT---------------DSEISNDEIFKYLYKYLPQDIVVTSVNNASDNFHSRYNVKEKV 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI E VF + ++H+ E+LDL+ M+EA K+ +G HDF SF A + S ++
Sbjct: 111 YTYRI-HNSEVHDVFTRKYSYHIKEKLDLKKMKEASKLFIGEHDFKSFTALKSKKKSTVK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
+ N RKK E++
Sbjct: 170 AI----------------------------------------NSITFRKKENDIEIVFSG 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY +R++VG L G ++++ +++ I+ K A APA GL+L VKY
Sbjct: 190 NGFLYKMIRILVGTLIQAGLNKISLDEIQNIMDKKDRNIAPETAPAHGLTLTEVKY 245
>gi|30248700|ref|NP_840770.1| tRNA pseudouridine synthase A [Nitrosomonas europaea ATCC 19718]
gi|42559793|sp|Q820P8.1|TRUA_NITEU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|30180295|emb|CAD84602.1| tRNA pseudouridine synthase [Nitrosomonas europaea ATCC 19718]
Length = 272
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 136/302 (45%), Gaps = 64/302 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
+ ++A+EY G + G QKQ C +V LE A G+ + + + RTDAGVHA V
Sbjct: 13 KIVLALEYDGRGYCGWQKQPGCLSVQSRLESALSGVAGRQIQVVAAGRTDAGVHALCQVV 72
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE-----GDIMVTDVRCVPSDFHARFR 173
H++ + VRR +N +++ GDI + + V DFHARF
Sbjct: 73 HLE------------------TCVRRPLNAWIRGTNALLPGDISILEASEVSDDFHARFS 114
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A ERTY Y +LS P + W V LDL MQ A K+L+G HDFS+FR+S CQ+
Sbjct: 115 ATERTYLYYLLSRPARPGIHHGKIGW-VHYPLDLEKMQMAAKLLIGKHDFSAFRSSECQS 173
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+ IR L L++S+ +F
Sbjct: 174 RTAIRQLTRLNISQHQQLFVFEFC------------------------------------ 197
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A +FL+H VR I+G L +G G+ + +L+ + T A+P GL L V+
Sbjct: 198 ----ANAFLHHMVRNILGGLVYIGRGKYPPEWMRILLEKRDRTLAAPTFSPDGLYLSGVR 253
Query: 354 YD 355
YD
Sbjct: 254 YD 255
>gi|410494048|ref|YP_006903894.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|410439208|emb|CCI61836.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 249
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 137/300 (45%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q+Q + RTV +E+ K GQPV I + RTDAGVHA
Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASGQPVPIHGAGRTDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ + KR D +R A++ Q+ DI V D+ V DFH R++
Sbjct: 61 QVIHFDLPQ--KR---------DLEKLRFALD--TQTPADIDVVDLAIVADDFHCRYQKH 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY + + +G P + + A H LD+ MQEA K LVG HDF+ F A+G +
Sbjct: 108 SKTYEFLVDNG-RPKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSVEN 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E +++ QD G VF
Sbjct: 167 KVRTITE------------ATLVQDDKT---------------GFLVFTF---------- 189
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + V ++ IL +K A P GL L ++Y+
Sbjct: 190 -SGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGNGLYLKEIRYE 248
>gi|294012442|ref|YP_003545902.1| tRNA pseudouridine synthase A [Sphingobium japonicum UT26S]
gi|292675772|dbj|BAI97290.1| tRNA pseudouridine synthase A [Sphingobium japonicum UT26S]
Length = 248
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 138/302 (45%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ VE+ G F G Q+Q + +V +E+A G+ V++ + RTDAGVH
Sbjct: 1 MARFAFTVEFDGRPFMGWQRQAHGPSVQQAMEDAIFSVTGERVAVHAAGRTDAGVHGLGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D+ + P ++ A+N L+ + + VP D+HARF
Sbjct: 61 RAHADIAK--DMTPFRLM---------EALNARLRP-APVAILACETVPDDWHARFSCTG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRI++ PL+ +E AW V + LD AMQ A ++LVG HDF++FR+ CQA SP
Sbjct: 109 RSYVYRIVNRRAPLT-WESGLAWRVIQPLDAEAMQRAAQLLVGRHDFTTFRSVHCQAESP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V G R + A
Sbjct: 168 VKTLDRLDVERA-----------------------------------GDR-----LAIHA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G +V D+E AK A AP GL FV
Sbjct: 188 EARSFLHHQVRSMVGCLVMVGMGRWSVGDLEAARDAKDRAALGLNAPPDGLY--FVSAHY 245
Query: 357 PE 358
P
Sbjct: 246 PN 247
>gi|306838494|ref|ZP_07471334.1| tRNA pseudouridine synthase A [Brucella sp. NF 2653]
gi|306406426|gb|EFM62665.1| tRNA pseudouridine synthase A [Brucella sp. NF 2653]
Length = 207
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 123/258 (47%), Gaps = 53/258 (20%)
Query: 101 ISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVT 159
+S + RTDAGVHA + V HVD+ + + VR AVN H + ++ I +
Sbjct: 1 MSAAGRTDAGVHATAQVAHVDLAK-----------DWGAGKVRDAVNAHLVMADERISIL 49
Query: 160 DVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVG 219
+V F ARF A+ R Y YRI + PL+V RAW V ++LD AM EA + L+G
Sbjct: 50 NVEKTTDTFDARFSARARHYLYRIHNRRAPLAV-NYQRAWWVQKQLDADAMHEAAQRLLG 108
Query: 220 CHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGG 279
HDF++FRA+ CQA SP++TLD L V+ NG
Sbjct: 109 EHDFTTFRATQCQAKSPVKTLDRLDVTR-----------------------------NGD 139
Query: 280 SNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAAS 339
E+ ARSFL++QVR G L VG G T D++ L+A+ A
Sbjct: 140 -----------MVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACG 188
Query: 340 PMAPACGLSLGFVKYDLP 357
+AP GL L V Y P
Sbjct: 189 QVAPPYGLYLVGVDYAFP 206
>gi|329120625|ref|ZP_08249288.1| tRNA pseudouridine synthase A [Neisseria bacilliformis ATCC
BAA-1200]
gi|327460849|gb|EGF07183.1| tRNA pseudouridine synthase A [Neisseria bacilliformis ATCC
BAA-1200]
Length = 269
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 139/305 (45%), Gaps = 56/305 (18%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M+ + +R LI V Y G+RF G QKQ TV LEEA G+ ++++ + RTD
Sbjct: 1 MTEPPKTRRALI-VAYDGSRFFGWQKQAGGVPTVQAALEEALSGIAGERIAVTAAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHAA+ V H D + +PG+ R N L EG + V V VP FH
Sbjct: 60 GVHAAAQVVHFDT---AAERPGQAW--------VRGTNSLL-PEG-VAVLRVHNVPPHFH 106
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
ARF A R Y Y + S P + W T LD M+EA +LVG HDFSSFRA+
Sbjct: 107 ARFDACGRRYRYVLQSAPVRSPLLAGRAGWTHTP-LDPAPMREAAALLVGTHDFSSFRAA 165
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
CQA SP++TL + +S TA F +++
Sbjct: 166 ECQAKSPVKTLYSVRLS---GTARFMALDL------------------------------ 192
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
+FL+H VR IVG L VG+G L+V+ ++ AK+ A P GL L
Sbjct: 193 -------HGNAFLHHMVRNIVGALVYVGSGRLSVAGFAELIAAKSRLKAPPTFMPDGLYL 245
Query: 350 GFVKY 354
Y
Sbjct: 246 TGADY 250
>gi|365905446|ref|ZP_09443205.1| tRNA pseudouridine synthase A [Lactobacillus versmoldensis KCTC
3814]
Length = 248
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 140/302 (46%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + + Y G +F G Q Q N RTV GV+E+A K G+ + + S RTDAGVHA
Sbjct: 1 MTRYKLTIAYDGAKFHGFQSQPNLRTVQGVIEKALSKMTKGKEIILVGSGRTDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D PG + P ++ + +A+N + DI+V D + V DFHAR+ +
Sbjct: 61 QVIHFDY-------PGYI--PAENML--KAINSLMPL--DIVVKDSQIVDEDFHARYGVK 107
Query: 176 ERTYFYRILSG--PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+TY YR+ G +P F++ A H + DL +Q A K L+G HDFSSF ASG
Sbjct: 108 RKTYLYRVDCGHYTDP---FKRFYAGHYSYSYDLEKIQTALKDLIGEHDFSSFAASGGVI 164
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+ +RT+ E V +P+ VF
Sbjct: 165 ENKVRTIYEAQVKY---------------------------LPDENELVFEF-------- 189
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+ VR++V + +G+G V D R+ + K A APA GL L V
Sbjct: 190 ---TGNGFLYNMVRILVATVLEIGSGRRPVHDFIRLFEVKDRQEARGTAPANGLYLKKVF 246
Query: 354 YD 355
YD
Sbjct: 247 YD 248
>gi|388456170|ref|ZP_10138465.1| tRNA pseudouridine synthase A [Fluoribacter dumoffii Tex-KL]
Length = 262
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 137/296 (46%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY G+ + G Q Q TV +E A K P+S+ + RTD GVHA + V
Sbjct: 2 RIALVLEYDGSHYHGWQAQTGLHTVQQAVEHALSKVADCPISVVCAGRTDTGVHATNQVI 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D ++I + N FL DI V + + +FHAR+ A R
Sbjct: 62 HFDCDKIRSIRAWI-----------HGANSFLPK--DICVKWGKELSEEFHARYSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I +GP ++ + W +LD R M +A +VL+G +DF+SFR+ CQ+N+P+R
Sbjct: 109 YRYVIYNGPIRPALLRSNVTWQY-RQLDHRLMHQAAQVLLGENDFTSFRSVECQSNTPMR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
+ +L VS + + ID + A
Sbjct: 168 NIHKLQVSRLGDLVI-------------IDIT---------------------------A 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR I GVL AVG+G+ VS V+ +LKAK + APA GL L V Y
Sbjct: 188 NAFLHHMVRNIAGVLIAVGSGKHPVSWVDEVLKAKDRRLGAETAPAYGLYLVQVTY 243
>gi|90962375|ref|YP_536291.1| tRNA pseudouridine synthase A [Lactobacillus salivarius UCC118]
gi|301300240|ref|ZP_07206452.1| tRNA pseudouridine synthase A [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|385840896|ref|YP_005864220.1| tRNA pseudouridine synthase A [Lactobacillus salivarius CECT 5713]
gi|123391325|sp|Q1WSC1.1|TRUA_LACS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|90821569|gb|ABE00208.1| tRNA pseudouridine synthase A [Lactobacillus salivarius UCC118]
gi|300215017|gb|ADJ79433.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Lactobacillus salivarius
CECT 5713]
gi|300852181|gb|EFK79853.1| tRNA pseudouridine synthase A [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 256
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 143/308 (46%), Gaps = 60/308 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP--VSISLSSRTDAGVHAAS 115
QR+ + + Y GT F+G Q Q N RTV VLE+A +K + +++ S RTD+GVHA
Sbjct: 3 QRFKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAINKMSKKDEYITVYGSGRTDSGVHALG 62
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSV--VRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D PH S + R +N L D V D + VP+DFH+R+
Sbjct: 63 QVVHFDF-------------PHPISAKGMLRGLNSMLPL--DCEVVDCKIVPNDFHSRYT 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+ Y YR+ G E ++ F++ H LD+ ++EA + G HD+SSF ASG QA
Sbjct: 108 THGKRYLYRVSRG-EFVNPFKRLYTGHYKYPLDIEKIKEAMPDVEGTHDYSSFVASGSQA 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +RT+ E V E +N D V N
Sbjct: 167 KSHVRTIYEAKVYE-------DKVN-DEIVFEFYGN------------------------ 194
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+QVR++V L +G G+ V D R+ + K + A APA GL L V
Sbjct: 195 ------GFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRSQARQTAPASGLYLKEVY 248
Query: 354 YDLPEDDQ 361
YD E+D+
Sbjct: 249 YD--EEDE 254
>gi|152996062|ref|YP_001340897.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1]
gi|150836986|gb|ABR70962.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1]
Length = 274
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 137/305 (44%), Gaps = 63/305 (20%)
Query: 58 QRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ ++ VEY G+ + G Q Q +V LE+A PV + + RTD+GVHA++
Sbjct: 3 KKVVLVVEYNGSEYKGWQAQKFGVPSVQENLEKALAIIANHPVKVVCAGRTDSGVHASAQ 62
Query: 117 VCH--VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H DVER + VN L S DI V V +DFHARF A
Sbjct: 63 VVHFETDVER-------------NERAWTLGVNTHLPS--DITVVAASPVSNDFHARFSA 107
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I S ++ K W + LD+ AM+EA KV +G HDFSSFRA GCQA
Sbjct: 108 LSRRYRYVIYSSDFCPAILSKGITW-TYKNLDVSAMKEAAKVFLGTHDFSSFRAVGCQAK 166
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+PIRT+ V + LG Y V
Sbjct: 167 TPIRTILNFEVHQ-------------------------LG----------------QYIV 185
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ RA +FL+H +R GVL ++G GE VS ++ L+AK T AP GL FV
Sbjct: 186 LDVRANAFLHHMIRNFAGVLMSIGAGEKPVSWAKQTLEAKDRTKGGITAPPTGLY--FVD 243
Query: 354 YDLPE 358
P+
Sbjct: 244 AQYPD 248
>gi|71065963|ref|YP_264690.1| tRNA pseudouridine synthase A [Psychrobacter arcticus 273-4]
gi|71038948|gb|AAZ19256.1| probable tRNA pseudouridine synthase [Psychrobacter arcticus 273-4]
Length = 276
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 148/319 (46%), Gaps = 66/319 (20%)
Query: 51 MSTNKRIQR----YLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIGQPVSISL 103
M+ N ++R IA+E++GT + G Q+Q R V+GV LE A +PV +
Sbjct: 1 MTENNEVKRPTYTLAIAIEFLGTHYHGWQRQ---REVLGVQQALETAISTVANEPVEVIA 57
Query: 104 SSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRC 163
+ RTD+ VHA++ + H P H+ R VN L DI + V+
Sbjct: 58 AGRTDSSVHASNMIAHFVTHAYR--------PTHNW---LRGVNSLLPD--DIALRWVQP 104
Query: 164 VPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDF 223
+P+DFHARF A R Y Y L+ + ++ H+ E LDL+AMQ A +VG HDF
Sbjct: 105 MPADFHARFAAIARRYRYITLNQTQRPAILNHQVT-HIYEPLDLKAMQLAAADIVGTHDF 163
Query: 224 SSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVF 283
SS+RA+ CQ+N P+R H+S LF+ +G VF
Sbjct: 164 SSYRAAACQSNQPVR-----HISH---ANLFT---------------------HGPFIVF 194
Query: 284 GIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAP 343
I +A FL+H VR ++G L A+G EL +D IL K T A P A
Sbjct: 195 DI-----------QADGFLHHMVRNLMGTLYAIGRHELEPADFLNILAKKDRTIAPPTAS 243
Query: 344 ACGLSLGFVKYDLPEDDQT 362
GL F+ PE QT
Sbjct: 244 GDGLY--FINAYYPEHFQT 260
>gi|297545296|ref|YP_003677598.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296843071|gb|ADH61587.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 240
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 140/289 (48%), Gaps = 54/289 (18%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+I V+Y GT + G Q Q N TV VL++A K G+ V++ +SRTD GVHA V +
Sbjct: 1 MIVVQYDGTNYHGWQYQKNAITVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 60
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ + + P E LP +SV+ DI++T + V FHAR+ A+ + Y
Sbjct: 61 ---KTNTKIPAEKLPYALNSVL----------PDDIVITQAKDVEDSFHARYSAKRKRYK 107
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y IL+ + ++ WH++ L++ M++A L+G HDFS+F+ASG S IRT+
Sbjct: 108 YLILNRKFRMPTM-RNYCWHISYPLNVEKMKKAATYLIGTHDFSAFKASGSSKTSTIRTV 166
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
+L + + N+D +I+ A
Sbjct: 167 YDLIIEK----------NED---FINIE---------------------------IEADG 186
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FLY+ VR+IVG L VG G++ ++V IL +K T A AP GL L
Sbjct: 187 FLYNMVRIIVGTLSYVGLGKIGENEVYNILASKDRTKAGITAPPQGLYL 235
>gi|386316261|ref|YP_006012425.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|417751770|ref|ZP_12400035.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|323126548|gb|ADX23845.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333772436|gb|EGL49284.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
Length = 249
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 137/300 (45%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q+Q + RTV +E+ K GQPV I + RTDAGVHA
Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASGQPVPIHGAGRTDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ + KR D +R A++ Q+ DI V D+ V DFH R++
Sbjct: 61 QVIHFDLPQ--KR---------DLEKLRFALD--TQTPDDIDVVDLAIVADDFHCRYQKH 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY + + +G P + + A H LD+ MQEA K LVG HDF+ F A+G +
Sbjct: 108 SKTYEFLVDNG-RPKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSVEN 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E +++ QD G VF
Sbjct: 167 KVRTITE------------ATLVQDDKT---------------GFLVFTF---------- 189
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + V ++ IL +K A P GL L ++Y+
Sbjct: 190 -SGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGNGLYLKEIRYE 248
>gi|15612730|ref|NP_241033.1| tRNA pseudouridine synthase A [Bacillus halodurans C-125]
gi|8134764|sp|Q9Z9J0.1|TRUA_BACHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|4512436|dbj|BAA75303.1| truA [Bacillus halodurans]
gi|10172779|dbj|BAB03886.1| tRNA pseudouridine synthase A (pseudouridylate synthase I)
[Bacillus halodurans C-125]
Length = 263
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 139/297 (46%), Gaps = 59/297 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAF---HKFIGQPVSISLSSRTDAGVHA 113
++R + V Y GT F+G Q Q N RTV G LE HK G + ++ S RTD GVHA
Sbjct: 1 MKRIGLKVAYDGTDFAGYQIQPNERTVQGELESVLKNIHK--GMSIRVTASGRTDTGVHA 58
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
+ H D S P + P +S Q DI V + VP+DFHAR+
Sbjct: 59 RGQIVHFDT---SLSFPVDRWPIALNS----------QLPADICVLEAADVPADFHARYS 105
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A+ + Y YR+L+ + VF ++ +HV LD+ AMQ A L+G HDFSSF A+ +
Sbjct: 106 AKTKEYRYRVLTSAQA-DVFRRNYTYHVRYPLDVEAMQRAAVQLLGTHDFSSFCAAKAEV 164
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT++++ AL+ G +F I
Sbjct: 165 EDKVRTIEDV--------ALWRE---------------------GDELIFSI-------- 187
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
R FLY+ VR+IVG L +G G+ + +V +IL A++ AA AP GL G
Sbjct: 188 ---RGNGFLYNMVRIIVGTLLEIGAGKRSAEEVAKILAARSREAAGKTAPGHGLISG 241
>gi|422758243|ref|ZP_16812005.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411078|gb|EFY01986.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 249
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 136/300 (45%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q+Q + RTV +E+ K G QPV I + RTDAGVHA
Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHERTVQEEIEKTLQKLTGGQPVPIHGAGRTDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ + KR D +R A++ Q+ DI V D+ V DFH R++
Sbjct: 61 QVIHFDLPQ--KR---------DLEKLRFALD--TQTPDDIDVVDLAIVADDFHCRYQKH 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY + + +G P + + A H LD+ MQEA K LVG HDF+ F A+G +
Sbjct: 108 SKTYEFLVDNG-RPKNPMMRHYATHYPYPLDMNKMQEAIKTLVGTHDFTGFTAAGTSVKN 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E +++ QD G VF
Sbjct: 167 KVRTITE------------ATLVQDDKT---------------GFLVFTF---------- 189
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + V ++ IL +K A P GL L + Y+
Sbjct: 190 -SGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGNGLYLKEIHYE 248
>gi|219849858|ref|YP_002464291.1| tRNA pseudouridine synthase ACD [Chloroflexus aggregans DSM 9485]
gi|254789611|sp|B8G6P6.1|TRUA_CHLAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|219544117|gb|ACL25855.1| tRNA pseudouridine synthase A [Chloroflexus aggregans DSM 9485]
Length = 278
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 134/293 (45%), Gaps = 50/293 (17%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ + Y GT F+GSQ Q + RTV G +E A+ + I L+ RTDAGVHA+ V HV
Sbjct: 6 LLLAYDGTDFAGSQWQTDIRTVQGAIEAAWEALTQEQRRIVLAGRTDAGVHASGQVAHV- 64
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ H + + R +N L + D+ V +V DFHAR+ A ER Y Y
Sbjct: 65 ----------QTATRHSLATIWRGLNAHLPT--DVTVQNVGEAVRDFHARYSAIEREYRY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I P PL + +A H LD+ AM A K+L G HDF++F + S +RT
Sbjct: 113 LIDCAPVPLPQL-RHQALHYAGTLDVTAMATALKLLEGTHDFAAFTTATPSQRSTVRT-- 169
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
++ + +V F ++ + E+ A A F
Sbjct: 170 -MYWTRIVERVWFD-------------------------------RRLLAIELAANA--F 195
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
L H VR+IVG L VG G +TV +L + A P APA GL+L V+Y
Sbjct: 196 LQHMVRMIVGTLLLVGRGRMTVDQFGEVLAGRDRRLAGPTAPAHGLTLTAVRY 248
>gi|134094449|ref|YP_001099524.1| tRNA pseudouridine synthase A [Herminiimonas arsenicoxydans]
gi|189030136|sp|A4G4G0.1|TRUA_HERAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|133738352|emb|CAL61397.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Herminiimonas
arsenicoxydans]
Length = 275
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 135/302 (44%), Gaps = 58/302 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
+R ++ V+Y G + G Q QLN TV LE A +KF Q ++ + + RTDAGVHA V
Sbjct: 12 RRIVLGVQYDGAPWQGWQTQLNGLTVQDKLEFALYKFTQQTITTACAGRTDAGVHALEQV 71
Query: 118 CHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDI-MVTDVRCVPS-DFHARFR 173
H D +ER D R VN FL S + ++V P+ +FHARF
Sbjct: 72 VHFDTTLER-------------DMQSWVRGVNTFLPSSIAVRWASEVAHDPAENFHARFS 118
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A+ RTY Y + + P + E W V LD+ MQEA L+G HDFS+FR+ CQA
Sbjct: 119 ARSRTYHYMLYNNPVRSPLLEGKAGW-VFRALDIAKMQEAAAHLLGQHDFSAFRSVQCQA 177
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ + + +F+
Sbjct: 178 KSPVKTMHAIKIERRGDLIMFT-------------------------------------- 199
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A +FL+H VR IVG L VG G S ++ +L + A+P GL L +
Sbjct: 200 --VHANAFLHHMVRNIVGSLIYVGNGTQAPSWLKEVLAGQERKFAAPTFMPDGLYLAKID 257
Query: 354 YD 355
YD
Sbjct: 258 YD 259
>gi|431545045|ref|ZP_19518686.1| tRNA pseudouridine synthase A [Enterococcus faecium E1731]
gi|430592093|gb|ELB30115.1| tRNA pseudouridine synthase A [Enterococcus faecium E1731]
Length = 248
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMTNGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V DFHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG I
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKI 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|417787511|ref|ZP_12435194.1| tRNA pseudouridine synthase A [Lactobacillus salivarius NIAS840]
gi|417809740|ref|ZP_12456421.1| tRNA pseudouridine synthase A [Lactobacillus salivarius GJ-24]
gi|418960983|ref|ZP_13512870.1| tRNA pseudouridine synthase A [Lactobacillus salivarius SMXD51]
gi|334307688|gb|EGL98674.1| tRNA pseudouridine synthase A [Lactobacillus salivarius NIAS840]
gi|335350664|gb|EGM52160.1| tRNA pseudouridine synthase A [Lactobacillus salivarius GJ-24]
gi|380344650|gb|EIA32996.1| tRNA pseudouridine synthase A [Lactobacillus salivarius SMXD51]
Length = 256
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 143/308 (46%), Gaps = 60/308 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP--VSISLSSRTDAGVHAAS 115
QR+ + + Y GT F+G Q Q N RTV VLE+A +K + +++ S RTD+GVHA
Sbjct: 3 QRFKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAINKMSKKDEYITVYGSGRTDSGVHALG 62
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSV--VRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D PH S + R +N L D V D + VP+DFH+R+
Sbjct: 63 QVVHFDF-------------PHPISAKGMLRGLNSMLPL--DCEVVDCKIVPNDFHSRYT 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+ Y YR+ G E ++ F++ H LD+ ++EA + G HD+SSF ASG QA
Sbjct: 108 THGKRYLYRVSRG-EFVNPFKRLYTGHYKYPLDIEKIKEAMPDVEGTHDYSSFVASGSQA 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +RT+ E V E +N D + N
Sbjct: 167 KSHVRTIYEAKVYE-------DKVN-DEIIFEFYGN------------------------ 194
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+QVR++V L +G G+ V D R+ + K + A APA GL L V
Sbjct: 195 ------GFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRSQARQTAPASGLYLKEVY 248
Query: 354 YDLPEDDQ 361
YD E+D+
Sbjct: 249 YD--EEDE 254
>gi|289579109|ref|YP_003477736.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9]
gi|289528822|gb|ADD03174.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9]
Length = 240
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 140/289 (48%), Gaps = 54/289 (18%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+I V+Y GT + G Q Q N TV VL++A K G+ V++ +SRTD GVHA V +
Sbjct: 1 MIVVQYDGTNYHGWQLQKNAITVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 60
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ + + P E LP +SV+ DI++T + V FHAR+ A+ + Y
Sbjct: 61 ---KTNTKMPAEKLPYALNSVL----------PDDIVITQAKDVEDSFHARYSAKRKRYK 107
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y IL+ + ++ WH++ L++ M++A L+G HDFS+F+ASG S IRT+
Sbjct: 108 YIILNRKFRMPTM-RNYCWHISYPLNVEKMKKAATYLIGTHDFSAFKASGSSKTSTIRTV 166
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
+L + + N+D +I+ A
Sbjct: 167 YDLIIEK----------NED---FINIE---------------------------IEADG 186
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FLY+ VR+IVG L VG G++ ++V IL +K T A AP GL L
Sbjct: 187 FLYNMVRIIVGTLSYVGLGKIGENEVYHILASKDRTKAGITAPPQGLYL 235
>gi|283795894|ref|ZP_06345047.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
gi|291076529|gb|EFE13893.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
Length = 275
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 138/302 (45%), Gaps = 49/302 (16%)
Query: 62 IAVEYIGTRFSGSQKQLNCR-TVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
I ++Y G+R+ G QKQ N + T+ G LE K G+PV I S RTDAGVHA V +
Sbjct: 7 IVLQYDGSRYDGWQKQGNTKNTIQGKLEAVLEKLAGEPVEIHGSGRTDAGVHALGQVANF 66
Query: 121 DVER-----ISKRKPGEVLPPHDSSVVRRAVNHFLQSE--GDIMVTDVRCVPSDFHARFR 173
+E + + P + +S V AV +L DI V VP FH+R
Sbjct: 67 RLEERCLEELVDKTPEKKENGGKASSVSAAVMDYLNRYLPEDIAVISAMEVPERFHSRLN 126
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A E+TY Y+I + +VFE+ + + EELDL AM+EA K+L+G HDF +F ++
Sbjct: 127 AVEKTYLYQIETAGRK-NVFERKYIYGLGEELDLLAMKEAAKLLLGSHDFRAFSSAKRMK 185
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +R L ++ + S L NG
Sbjct: 186 KSTVRELRKIEIHRDGSRVLLEFTG------------------NG--------------- 212
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+ VR++ G L +G TV V + L+++ A APA GL L V+
Sbjct: 213 -------FLYNMVRILTGTLIEIGLHRRTVDSVRKALESQDRENAGFTAPAEGLLLKSVR 265
Query: 354 YD 355
YD
Sbjct: 266 YD 267
>gi|390166660|ref|ZP_10218918.1| tRNA pseudouridine synthase A [Sphingobium indicum B90A]
gi|389590446|gb|EIM68436.1| tRNA pseudouridine synthase A [Sphingobium indicum B90A]
Length = 248
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 138/302 (45%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ VE+ G F G Q+Q + +V +E+A G+ V++ + RTDAGVH
Sbjct: 1 MARFAFTVEFDGRPFMGWQRQAHGPSVQQAMEDAIFSVTGERVAVHAAGRTDAGVHGLGM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D+ + P ++ A+N L+ + + VP D+HARF
Sbjct: 61 RAHADIAK--DMTPFRLM---------EALNARLRP-APVAILACETVPDDWHARFSCTG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y YRI++ PL+ +E AW V + LD AMQ A ++LVG HDF++FR+ CQA SP
Sbjct: 109 RSYVYRIVNRRAPLT-WESGLAWRVIQPLDAEAMQRAAQLLVGRHDFTTFRSVHCQAESP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V G R + A
Sbjct: 168 VKTLDRLDVERA-----------------------------------GDR-----LAIHA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L VG G ++ D+E AK A AP GL FV
Sbjct: 188 EARSFLHHQVRSMVGCLVMVGMGRWSLGDLEAARDAKDRAALGLNAPPDGLY--FVSAHY 245
Query: 357 PE 358
P
Sbjct: 246 PN 247
>gi|367472173|ref|ZP_09471763.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Bradyrhizobium sp. ORS 285]
gi|365275523|emb|CCD84231.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Bradyrhizobium sp. ORS 285]
Length = 245
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 141/298 (47%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE+A G P + S RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGAPFYGWQLQETLPSVQGALEKAVQATCGVPTRVHGSGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+E+ +P + +R A+N L+ + V D VP +F ARF A++
Sbjct: 61 VAHCDIEK--DFRPDK---------LRDALNAHLRPN-PVAVLDAEIVPDNFEARFSARK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L++ E R W V + LD AM A + L+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRIVNRRSNLAL-EAGRVWRVPQRLDSDAMHAAAQRLIGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V +D ++ ++
Sbjct: 168 EKTLDQLDVV------------RDGDAIT----------------------------ILT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARS+L+ QVR +VG L VG G + D+ L A+ A +AP GL L V Y
Sbjct: 188 SARSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARNRAACGVVAPPEGLYLVKVDY 245
>gi|398852822|ref|ZP_10609463.1| pseudouridylate synthase I [Pseudomonas sp. GM80]
gi|398242799|gb|EJN28404.1| pseudouridylate synthase I [Pseudomonas sp. GM80]
Length = 318
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 140/312 (44%), Gaps = 73/312 (23%)
Query: 59 RYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+SG Q+QL +TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 52 RVALGVEYKGSRYSGWQRQLTGVKTVQEELEKALSKVANSPVSLQCAGRTDAGVHACGQV 111
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D D S+ + + DI V+ R +P+ FHARF+A R
Sbjct: 112 VHFDTTV-------------DRSLKAWVMGANINLPHDISVSWARVMPAHFHARFKAIAR 158
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSFRASG 230
Y Y I + ++ R H+ EE LD+ M EA + L+G HDFS+FRA
Sbjct: 159 RYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLIGTHDFSAFRAGQ 210
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA SPI+ + L V+ +G V I
Sbjct: 211 CQAKSPIKKMHHLRVTR-----------------------------HGKMIVLDI----- 236
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
RA +FL+H VR I GVL +G GE V ++ +L+++ + A GL L
Sbjct: 237 ------RANAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRERRSGGVTAHPYGLYLV 290
Query: 351 FVKYD----LPE 358
V+Y LPE
Sbjct: 291 QVEYHDEFPLPE 302
>gi|344341009|ref|ZP_08771932.1| tRNA pseudouridine synthase A [Thiocapsa marina 5811]
gi|343799254|gb|EGV17205.1| tRNA pseudouridine synthase A [Thiocapsa marina 5811]
Length = 302
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 137/325 (42%), Gaps = 68/325 (20%)
Query: 39 EEVPETRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP 98
E PE V + N + R + +EY G+ F G Q Q+ R+V LEEA + P
Sbjct: 17 ESTPEPDGSGSVAAAN--LHRIAMGIEYDGSAFRGWQIQVGVRSVQATLEEAIGQVADHP 74
Query: 99 VSISLSSRTDAGVHAASNVCHVDV-----ERISKRKPGEVLPPHDSSVVRRAVNHFLQSE 153
+ + + RTDAGVHA V H D ER LPP
Sbjct: 75 IRVQCAGRTDAGVHADEQVVHFDTSARRTERAWVLGTNVNLPP----------------- 117
Query: 154 GDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEA 213
D+ V V FHARF AQ R Y Y I+ S ++DRA LD+ M+EA
Sbjct: 118 -DVAVRWACPVDPQFHARFDAQARHYRYLIMVRAT-RSPLQRDRAVWSHRPLDIERMREA 175
Query: 214 CKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKL 273
+ LVG HDFSSFRA CQA SPIR L L +SE D+ +L
Sbjct: 176 GQALVGVHDFSSFRAVACQAKSPIRHLHYLELSET-------------------DDLIEL 216
Query: 274 GMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAK 333
+ G+N FL+H VR I GVL +G GE + +L+ +
Sbjct: 217 RV---GAN------------------GFLHHMVRNIAGVLMTIGRGEAPLDWTRELLELR 255
Query: 334 TVTAASPMAPACGLSLGFVKYDLPE 358
AP GL FV+ D PE
Sbjct: 256 DRRLGGVTAPPQGLY--FVRADYPE 278
>gi|260576677|ref|ZP_05844664.1| tRNA pseudouridine synthase A [Rhodobacter sp. SW2]
gi|259021162|gb|EEW24471.1| tRNA pseudouridine synthase A [Rhodobacter sp. SW2]
Length = 257
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 146/305 (47%), Gaps = 54/305 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPV--SISLSSRTDAGVHAA 114
+ RY + +EY GT F G Q+Q + V EA + QP +++ + RTDAGVHA
Sbjct: 1 MPRYALKIEYDGTPFQGWQRQAPGQPSVQAALEAALARL-QPGEHTVAAAGRTDAGVHAT 59
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H D++R D+ + A+N +L+ + + V V V DFHARF A
Sbjct: 60 GQVAHCDLDR-----------EWDTFRLAGAINAWLRPD-PVAVLAVARVADDFHARFSA 107
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ER Y +R+++ P++ ++ R W + + LD M++ L+G HDF++FRA+ CQA
Sbjct: 108 RERRYLFRLVTRRAPVT-HDRGRVWQLPQPLDAGLMRQGAAHLIGKHDFTTFRAALCQAA 166
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP++TLDE+ + +D P I
Sbjct: 167 SPVKTLDEIAIE-----------TRDYPEGQEI-------------------------RF 190
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RARSFL++QVR I+G L VG G V L A+ A P+ P GL L V Y
Sbjct: 191 TLRARSFLHNQVRSIIGTLAQVGAGHWPPERVAEALAARDRAACGPVCPPQGLYLAGVGY 250
Query: 355 DLPED 359
P+D
Sbjct: 251 --PQD 253
>gi|307544826|ref|YP_003897305.1| tRNA pseudouridine synthase A [Halomonas elongata DSM 2581]
gi|307216850|emb|CBV42120.1| tRNA pseudouridine synthase A [Halomonas elongata DSM 2581]
Length = 292
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 128/294 (43%), Gaps = 54/294 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+AVEY G+++ G Q+ + +V LE+A + G PV + S RTD+GVHA + H D
Sbjct: 1 MAVEYDGSQYCGWQRLKHAASVQASLEQALSRVAGAPVRVHASGRTDSGVHATRQIVHFD 60
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
PP S DI V V V DFHARF+A R Y Y
Sbjct: 61 -------------PPAPRSEKAWVFGANANLPRDIAVRWVMPVGEDFHARFKALARRYRY 107
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
+L+ P V E+ + LD AM EA +VLVG HDFSSFRA+GCQ+ +P R L
Sbjct: 108 VLLNQPS-RPVLERANVTWCRDPLDAEAMHEAAQVLVGEHDFSSFRAAGCQSKTPWRHLH 166
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
F +++ P++ V + +F
Sbjct: 167 ------------FIEVHRHGPLVV----------------------------VDVQGNAF 186
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
L+H +R I G L VG GE + R+L + T APACGL YD
Sbjct: 187 LHHMIRNIAGALVTVGRGEQGADYLARLLALRDRTQGDVTAPACGLHFVDSLYD 240
>gi|373494176|ref|ZP_09584781.1| tRNA pseudouridine synthase A [Eubacterium infirmum F0142]
gi|371968673|gb|EHO86127.1| tRNA pseudouridine synthase A [Eubacterium infirmum F0142]
Length = 268
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 147/303 (48%), Gaps = 54/303 (17%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
L+ +EY G+ F G Q+Q TV G LEEA +P+ + +SRTDAGVHA + C+
Sbjct: 6 LLTLEYDGSLFHGWQEQEGQLTVQGRLEEALSSVCRKPIKVFGTSRTDAGVHALAQCCNF 65
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSE--------GDIMVTDVRCVPSDFHARF 172
E I P D + AVN+ L I V P+ FHARF
Sbjct: 66 K-ENID--------IPTDR--IAHAVNNMLSGGRYGAGSKLSAIRVLSAEEKPAGFHARF 114
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+ + Y YR+ E SVFE++ + V E+LD++AM EACK LVG HDF++F++SG
Sbjct: 115 DCKGKKYIYRLCD--EGASVFERNYCYFVDEKLDIQAMNEACKYLVGTHDFAAFQSSGA- 171
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
SP RT +S+A S I++D NG S+ I
Sbjct: 172 --SPRRT-----TVRTISSAKVSRIHRD----------------NGDSSEVQI------- 201
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
EV FLY+ VR++ G L +G G+ + +D++ I+ + A AP CGL L +
Sbjct: 202 EVCGDG--FLYNMVRIVTGTLVEIGIGKRSSNDMKSIVSSLDRKQAGHTAPPCGLYLAEI 259
Query: 353 KYD 355
++
Sbjct: 260 YFE 262
>gi|195940683|ref|ZP_03086065.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4024]
gi|334124977|ref|ZP_08498971.1| tRNA pseudouridine synthase A [Enterobacter hormaechei ATCC 49162]
gi|419959300|ref|ZP_14475355.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
gi|295098046|emb|CBK87136.1| pseudouridylate synthase I [Enterobacter cloacae subsp. cloacae
NCTC 9394]
gi|333387547|gb|EGK58741.1| tRNA pseudouridine synthase A [Enterobacter hormaechei ATCC 49162]
gi|388605811|gb|EIM35026.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
Length = 270
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 140/309 (45%), Gaps = 60/309 (19%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
K + R + +EY G+++ G Q+Q R+V LE+A + +P+S+ + RTDAGVH
Sbjct: 7 KPVHRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPISVFCAGRTDAGVHGT 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H D + K + VN L GDI V V+ VP DFHARF A
Sbjct: 67 GQVVHFDTTAVRKDAAWTL-----------GVNANL--PGDIAVRWVKAVPDDFHARFSA 113
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I + +V + H E LD MQ A + L+G +DF+SFRA CQ+
Sbjct: 114 TARRYRYVIYNQRLRPAVLSQGVT-HFYEPLDAERMQRAAQCLIGENDFTSFRAVQCQSR 172
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + ++VS ++ +Y V
Sbjct: 173 TPWRNVMHINVS-----------------------------------------RYGAYVV 191
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ +A +F++H VR IVG L VG G S + +L AK T A+ A A GL L V
Sbjct: 192 VDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVSVD 251
Query: 354 Y----DLPE 358
Y DLP+
Sbjct: 252 YPDRFDLPK 260
>gi|69247200|ref|ZP_00604262.1| tRNA pseudouridine synthase [Enterococcus faecium DO]
gi|257878755|ref|ZP_05658408.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257881397|ref|ZP_05661050.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257890614|ref|ZP_05670267.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|293562977|ref|ZP_06677444.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162]
gi|314937639|ref|ZP_07844965.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04]
gi|314942862|ref|ZP_07849675.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C]
gi|314948002|ref|ZP_07851406.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082]
gi|314950919|ref|ZP_07853988.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A]
gi|314991433|ref|ZP_07856910.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B]
gi|314995046|ref|ZP_07860166.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01]
gi|383327446|ref|YP_005353330.1| tRNA pseudouridine synthase A [Enterococcus faecium Aus0004]
gi|389867271|ref|YP_006374694.1| tRNA-pseudouridine synthase I [Enterococcus faecium DO]
gi|415896805|ref|ZP_11550910.1| tRNA pseudouridine synthase A [Enterococcus faecium E4453]
gi|416132123|ref|ZP_11597813.1| tRNA pseudouridine synthase A [Enterococcus faecium E4452]
gi|424797462|ref|ZP_18223046.1| tRNA pseudouridine synthase A [Enterococcus faecium S447]
gi|424828252|ref|ZP_18252988.1| tRNA pseudouridine synthase A [Enterococcus faecium R501]
gi|424854855|ref|ZP_18279198.1| tRNA pseudouridine synthase A [Enterococcus faecium R499]
gi|424869431|ref|ZP_18293135.1| tRNA pseudouridine synthase A [Enterococcus faecium R497]
gi|424950219|ref|ZP_18365390.1| tRNA pseudouridine synthase A [Enterococcus faecium R496]
gi|424954358|ref|ZP_18369260.1| tRNA pseudouridine synthase A [Enterococcus faecium R494]
gi|424958446|ref|ZP_18373092.1| tRNA pseudouridine synthase A [Enterococcus faecium R446]
gi|424959879|ref|ZP_18374436.1| tRNA pseudouridine synthase A [Enterococcus faecium P1986]
gi|424969500|ref|ZP_18383070.1| tRNA pseudouridine synthase A [Enterococcus faecium P1140]
gi|424974094|ref|ZP_18387346.1| tRNA pseudouridine synthase A [Enterococcus faecium P1137]
gi|424981065|ref|ZP_18393818.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV99]
gi|424984579|ref|ZP_18397107.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV69]
gi|424987439|ref|ZP_18399814.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV38]
gi|424990891|ref|ZP_18403081.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV26]
gi|424994548|ref|ZP_18406483.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV168]
gi|424997377|ref|ZP_18409140.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV165]
gi|425001396|ref|ZP_18412915.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV161]
gi|425004004|ref|ZP_18415334.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV102]
gi|425006893|ref|ZP_18418048.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV1]
gi|425011040|ref|ZP_18421964.1| tRNA pseudouridine synthase A [Enterococcus faecium E422]
gi|425014143|ref|ZP_18424838.1| tRNA pseudouridine synthase A [Enterococcus faecium E417]
gi|425017881|ref|ZP_18428362.1| tRNA pseudouridine synthase A [Enterococcus faecium C621]
gi|425020890|ref|ZP_18431177.1| tRNA pseudouridine synthase A [Enterococcus faecium C497]
gi|425030507|ref|ZP_18435680.1| tRNA pseudouridine synthase A [Enterococcus faecium C1904]
gi|425035568|ref|ZP_18440403.1| tRNA pseudouridine synthase A [Enterococcus faecium 514]
gi|425041744|ref|ZP_18446127.1| tRNA pseudouridine synthase A [Enterococcus faecium 511]
gi|425045393|ref|ZP_18449499.1| tRNA pseudouridine synthase A [Enterococcus faecium 510]
gi|425048537|ref|ZP_18452437.1| tRNA pseudouridine synthase A [Enterococcus faecium 509]
gi|425051628|ref|ZP_18455285.1| tRNA pseudouridine synthase A [Enterococcus faecium 506]
gi|430831851|ref|ZP_19449899.1| tRNA pseudouridine synthase A [Enterococcus faecium E0333]
gi|430848250|ref|ZP_19466076.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1133]
gi|430855719|ref|ZP_19473425.1| tRNA pseudouridine synthase A [Enterococcus faecium E1392]
gi|431749395|ref|ZP_19538136.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2297]
gi|431755908|ref|ZP_19544550.1| tRNA pseudouridine synthase A [Enterococcus faecium E2883]
gi|431768043|ref|ZP_19556484.1| tRNA pseudouridine synthase A [Enterococcus faecium E1321]
gi|431769452|ref|ZP_19557862.1| tRNA pseudouridine synthase A [Enterococcus faecium E1644]
gi|431773311|ref|ZP_19561637.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2369]
gi|431779671|ref|ZP_19567863.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E4389]
gi|431782526|ref|ZP_19570659.1| tRNA pseudouridine synthase A [Enterococcus faecium E6012]
gi|431784347|ref|ZP_19572389.1| tRNA pseudouridine synthase A [Enterococcus faecium E6045]
gi|68194965|gb|EAN09433.1| tRNA pseudouridine synthase [Enterococcus faecium DO]
gi|257812983|gb|EEV41741.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257817055|gb|EEV44383.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257826974|gb|EEV53600.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|291605103|gb|EFF34570.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162]
gi|313590772|gb|EFR69617.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01]
gi|313593913|gb|EFR72758.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B]
gi|313596928|gb|EFR75773.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A]
gi|313598334|gb|EFR77179.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C]
gi|313643016|gb|EFS07596.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04]
gi|313645600|gb|EFS10180.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082]
gi|364090913|gb|EHM33441.1| tRNA pseudouridine synthase A [Enterococcus faecium E4453]
gi|364093389|gb|EHM35663.1| tRNA pseudouridine synthase A [Enterococcus faecium E4452]
gi|378937140|gb|AFC62212.1| tRNA pseudouridine synthase A [Enterococcus faecium Aus0004]
gi|388532520|gb|AFK57712.1| tRNA-pseudouridine synthase I [Enterococcus faecium DO]
gi|402921018|gb|EJX41488.1| tRNA pseudouridine synthase A [Enterococcus faecium S447]
gi|402922786|gb|EJX43133.1| tRNA pseudouridine synthase A [Enterococcus faecium R501]
gi|402932184|gb|EJX51716.1| tRNA pseudouridine synthase A [Enterococcus faecium R499]
gi|402933508|gb|EJX52934.1| tRNA pseudouridine synthase A [Enterococcus faecium R496]
gi|402935534|gb|EJX54777.1| tRNA pseudouridine synthase A [Enterococcus faecium R497]
gi|402936992|gb|EJX56136.1| tRNA pseudouridine synthase A [Enterococcus faecium R494]
gi|402940072|gb|EJX58929.1| tRNA pseudouridine synthase A [Enterococcus faecium R446]
gi|402948470|gb|EJX66607.1| tRNA pseudouridine synthase A [Enterococcus faecium P1140]
gi|402949363|gb|EJX67429.1| tRNA pseudouridine synthase A [Enterococcus faecium P1986]
gi|402957441|gb|EJX74832.1| tRNA pseudouridine synthase A [Enterococcus faecium P1137]
gi|402964679|gb|EJX81447.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV99]
gi|402968526|gb|EJX85005.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV69]
gi|402974431|gb|EJX90483.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV38]
gi|402978473|gb|EJX94212.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV26]
gi|402979975|gb|EJX95614.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV168]
gi|402986491|gb|EJY01614.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV165]
gi|402986953|gb|EJY02052.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV161]
gi|402990657|gb|EJY05522.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV102]
gi|402996225|gb|EJY10625.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV1]
gi|402998247|gb|EJY12512.1| tRNA pseudouridine synthase A [Enterococcus faecium E422]
gi|402999493|gb|EJY13680.1| tRNA pseudouridine synthase A [Enterococcus faecium E417]
gi|403002740|gb|EJY16686.1| tRNA pseudouridine synthase A [Enterococcus faecium C1904]
gi|403003399|gb|EJY17299.1| tRNA pseudouridine synthase A [Enterococcus faecium C621]
gi|403008068|gb|EJY21597.1| tRNA pseudouridine synthase A [Enterococcus faecium C497]
gi|403017822|gb|EJY30546.1| tRNA pseudouridine synthase A [Enterococcus faecium 514]
gi|403025525|gb|EJY37603.1| tRNA pseudouridine synthase A [Enterococcus faecium 511]
gi|403027086|gb|EJY38998.1| tRNA pseudouridine synthase A [Enterococcus faecium 510]
gi|403030468|gb|EJY42151.1| tRNA pseudouridine synthase A [Enterococcus faecium 509]
gi|403037248|gb|EJY48548.1| tRNA pseudouridine synthase A [Enterococcus faecium 506]
gi|430480492|gb|ELA57666.1| tRNA pseudouridine synthase A [Enterococcus faecium E0333]
gi|430535593|gb|ELA75993.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1133]
gi|430546261|gb|ELA86223.1| tRNA pseudouridine synthase A [Enterococcus faecium E1392]
gi|430611524|gb|ELB48605.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2297]
gi|430616023|gb|ELB52948.1| tRNA pseudouridine synthase A [Enterococcus faecium E2883]
gi|430629772|gb|ELB66160.1| tRNA pseudouridine synthase A [Enterococcus faecium E1321]
gi|430636734|gb|ELB72794.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2369]
gi|430637027|gb|ELB73071.1| tRNA pseudouridine synthase A [Enterococcus faecium E1644]
gi|430641433|gb|ELB77235.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E4389]
gi|430647163|gb|ELB82611.1| tRNA pseudouridine synthase A [Enterococcus faecium E6012]
gi|430649921|gb|ELB85288.1| tRNA pseudouridine synthase A [Enterococcus faecium E6045]
Length = 248
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V DFHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG I
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKI 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|344200314|ref|YP_004784640.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrivorans SS3]
gi|343775758|gb|AEM48314.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrivorans SS3]
Length = 271
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 138/305 (45%), Gaps = 58/305 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G F G Q+QL+ +V GVLE A + P+S+ ++ RTD GVHA V
Sbjct: 11 RWALGLEYDGHGFCGWQRQLDQESVQGVLETALSRVAQCPISVIVAGRTDTGVHALCQVV 70
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H +S V+ P ++ V R N L + + + VP FHARF A R
Sbjct: 71 HF----VSP-----VVRPPEAWV--RGANTCLPK--GVALRWAKAVPDHFHARFSAMARR 117
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y IL+ E +++ AW V LD++AMQ A + L+G HDFS+FRAS CQA SPIR
Sbjct: 118 YRYMILNQREKSALWRNHTAW-VYRPLDVQAMQVAAQTLLGTHDFSAFRASACQAKSPIR 176
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
L L V+ ++ V A A
Sbjct: 177 DLCRLQVT----------------------------------------RRGDLIAVDAEA 196
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY---- 354
FL+H VR + GVL A+G G+ V +L + A AP GL +Y
Sbjct: 197 NGFLHHMVRNLAGVLIAIGKGDRPVGWAAEVLASCDRCQAGVTAPPGGLYFVAPRYPAEF 256
Query: 355 DLPED 359
LP D
Sbjct: 257 GLPVD 261
>gi|91789465|ref|YP_550417.1| tRNA pseudouridine synthase A [Polaromonas sp. JS666]
gi|123059533|sp|Q126M3.1|TRUA_POLSJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91698690|gb|ABE45519.1| tRNA pseudouridine synthase A [Polaromonas sp. JS666]
Length = 264
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 142/314 (45%), Gaps = 56/314 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + + Y G+ + G Q QL+ TV LE A +F QPV + RTDAGVH V
Sbjct: 2 RIALGISYSGSAYEGWQSQLSGNTVQDKLESALARFAAQPVRTLCAGRTDAGVHGLMQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + R G + R N FL S DI V R VP FH R A R
Sbjct: 62 HFDT--VLHRDMGSWV---------RGTNAFLPS--DIAVQWAREVPDTFHCRGSAIARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +L P SV E R V LD AM++A LVG HDFSSFRA+ CQA SP++
Sbjct: 109 YAYVVLESPVRPSV-EAGRVGWVYRPLDGAAMRQAITHLVGEHDFSSFRAAQCQAKSPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T++ + +SE T G + H +E A
Sbjct: 168 TINRIEISERAGT--------------------------------GSKYWHFEFE----A 191
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS-LGFV---KY 354
+FL+H +R I+G L A+G G + ++ A++ AA+P GL LG V Y
Sbjct: 192 NAFLHHMIRNIMGCLVAIGQGSHEPGWLLDVMAARSRDAAAPTFSPNGLYFLGPVYEDHY 251
Query: 355 DLPEDDQTDAAESL 368
LP ++T A + L
Sbjct: 252 GLP--NRTAAYDWL 263
>gi|335419695|ref|ZP_08550744.1| tRNA pseudouridine synthase A [Salinisphaera shabanensis E1L3A]
gi|334896227|gb|EGM34381.1| tRNA pseudouridine synthase A [Salinisphaera shabanensis E1L3A]
Length = 259
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 129/296 (43%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ VEY G+ + G Q Q + +V LE A + P+ S RTD GVHA +
Sbjct: 2 RWAACVEYDGSAYHGWQSQPHASSVQDTLEAALTRLAAAPIRTICSGRTDTGVHAQGQIV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D E + + + +L N +L DI + V VP FHARF A R
Sbjct: 62 HFDTE-VERSERAWLL----------GTNRYLPE--DIALQWVVPVPQAFHARFGAVARE 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y IL P S ++RA+H LD+ AMQ A + LVG HDFS+FRA+ CQA +P R
Sbjct: 109 YRYWILDRTAP-SALWRNRAYHSHHRLDVDAMQTAAQHLVGYHDFSAFRAAACQAKTPWR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
L V R EV RA
Sbjct: 168 DLTRCDVVR--------------------------------------RGDWIRLEV--RA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR IVG L VG GE + + ++L K A APA GLSL V Y
Sbjct: 188 NAFLHHMVRNIVGSLLPVGRGERGPAWLAQLLANKDRRRAGMTAPAQGLSLRRVHY 243
>gi|260887817|ref|ZP_05899080.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185]
gi|330838710|ref|YP_004413290.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185]
gi|260862493|gb|EEX76993.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185]
gi|329746474|gb|AEB99830.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185]
Length = 258
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 136/306 (44%), Gaps = 66/306 (21%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
R + + V Y GT + G Q+Q R V VLEE G + ++ + RTDAGVHA
Sbjct: 12 RARNVCLTVAYDGTAYHGFQRQSPPIRAVQNVLEEKLALVFGDAIELAAAGRTDAGVHAM 71
Query: 115 SNVCH------VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
V + + ERI R VLPP DI+V R DF
Sbjct: 72 GQVVNFFTDGRIPTERIV-RAMNSVLPP------------------DIVVKAAREEGRDF 112
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
AR A+ ++Y YRI G P + F + AW+V LDL AM EA +L+G HDFS+FRA
Sbjct: 113 SARHSAKSKSYIYRIQEGDTP-NPFSERYAWYVGTPLDLAAMNEAAALLLGTHDFSAFRA 171
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
+G P+RT ++ +E G + G R +
Sbjct: 172 AGGAPMLPVRT---MYSAE-------------------------------GRRIEGERIE 197
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
R + A FLYH R IVG L VG G T +D IL ++ AS APACGL
Sbjct: 198 FRFH-----ANGFLYHMARNIVGTLVDVGKGRRTRADFAAILASRERKRASATAPACGLF 252
Query: 349 LGFVKY 354
L V+Y
Sbjct: 253 LESVEY 258
>gi|317123065|ref|YP_004103068.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM
12885]
gi|315593045|gb|ADU52341.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM
12885]
Length = 298
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 138/318 (43%), Gaps = 56/318 (17%)
Query: 38 PEEVPETRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQ 97
P PE + R+ R ++A Y GT F+G Q+Q RTV V+E+A + +G
Sbjct: 26 PAGPPEGPAGPATVPGGGRLLRAVLA--YDGTDFAGWQRQPRQRTVQQVVEDALERLLGH 83
Query: 98 PVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIM 157
PV ++ + RTDAGVHA + V H R + P + L P A+ L + D++
Sbjct: 84 PVRVTAAGRTDAGVHARAQVIHW---RTPRPFPVDRLVP--------ALRGLLPA--DVV 130
Query: 158 VTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVL 217
+ P FHAR+ A+ +TY Y + P P + WH+ +LD+ AM EA + L
Sbjct: 131 AVEAGEAPPGFHARYSARRKTYAYHVWRDPVP-DPLHRRWQWHLPLDLDVDAMVEAARRL 189
Query: 218 VGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPN 277
G HDF+ F+A+G SP+R T ++ + P+L
Sbjct: 190 EGTHDFAPFKAAG----SPVR--------RTRRTLYRCAVEERGPLL------------- 224
Query: 278 GGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTA 337
+ A FL H R IVG L +G G VE IL
Sbjct: 225 ---------------RFVLEADGFLMHMARGIVGTLVEIGRGRWQADRVEAILAEGRRDL 269
Query: 338 ASPMAPACGLSLGFVKYD 355
A P APA GL L V YD
Sbjct: 270 AGPTAPAHGLVLWQVVYD 287
>gi|238927931|ref|ZP_04659691.1| tRNA-pseudouridine synthase I [Selenomonas flueggei ATCC 43531]
gi|238884264|gb|EEQ47902.1| tRNA-pseudouridine synthase I [Selenomonas flueggei ATCC 43531]
Length = 256
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 131/303 (43%), Gaps = 59/303 (19%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
+R + + + Y GT + G Q+Q V VLE A K G+ V ++ + RTDAGVHA
Sbjct: 4 QRARNIALTIAYDGTNYHGFQRQTPPVLAVQNVLEGALAKICGEMVELAAAGRTDAGVHA 63
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V + + R P E LP RAVN L DI+V+ P +F AR
Sbjct: 64 YGQVVNFFTD---GRIPTEHLP--------RAVNGLLPP--DIVVSQAWEAPREFSARHS 110
Query: 174 AQERTYFYRI--LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
A + Y YRI P P F ++ AW V + LD AM +L G HD+SSFRA+G
Sbjct: 111 ATGKAYVYRIEECRVPNP---FTRNYAWQVFQPLDHEAMHAVLLLLKGTHDYSSFRAAGG 167
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
SP+RTLDE+ ++E +
Sbjct: 168 APMSPVRTLDEIRLTE----------------------------------------EEGR 187
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
+ FLYH VR IV AVG G ++ S I A+ A P APACGL L
Sbjct: 188 LSIYVHGTGFLYHMVRNIVSTAAAVGMGRISPSRFAEIFAARDRRLAPPTAPACGLYLLA 247
Query: 352 VKY 354
V Y
Sbjct: 248 VDY 250
>gi|392988146|ref|YP_006486739.1| tRNA pseudouridine synthase A [Enterococcus hirae ATCC 9790]
gi|392335566|gb|AFM69848.1| tRNA pseudouridine synthase A [Enterococcus hirae ATCC 9790]
Length = 248
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 131/302 (43%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA
Sbjct: 1 MTRYKAIIAYDGTHFNGFQKQPNGRTVQEEMEKTLKKMANGKEITVFGSGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D P + + R QS DI V V V DFHAR+ +
Sbjct: 61 QVIHFDY-------------PEERPLERMRFALDTQSSEDIAVKAVEIVSDDFHARYLVK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG
Sbjct: 108 EKTYQFRVDIG-KPRSPFRRHYASYFPYPLDLSKIQRALPDLIGTHDFTSFCASGSSIED 166
Query: 236 PIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ E + V+E LF+
Sbjct: 167 KVRTIYEAKMEVNEAGDELLFT-------------------------------------- 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY +R++VG L +G G L+ + I+ K AA P A GL L V
Sbjct: 189 --FRGNGFLYKMIRILVGTLLKIGNGRLSEDSIPEIIAKKDRNAAGPTAHPEGLYLYEVV 246
Query: 354 YD 355
YD
Sbjct: 247 YD 248
>gi|192289057|ref|YP_001989662.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris TIE-1]
gi|192282806|gb|ACE99186.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris TIE-1]
Length = 245
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 136/298 (45%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE A G+ V + + RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPALPSVQGALEVAALATCGEAVRVHGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ + P + +R A+N L+ + V VP F ARF A
Sbjct: 61 VAHVDIPK-----------PFRADKLRDALNAHLRPN-PVAVLAAEIVPDTFEARFSAVR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + L+ + + W V ++LD AM A +VL+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRIANRRSNLA-LDLGKVWRVPKQLDTDAMHRAAQVLIGKHDFTTFRDTECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD V + + + ++I
Sbjct: 168 EKTLD----------------------------------------VLDVVRDGDAVDIIT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARS+L+ QVR +VG L VG G T D+ L A+ +A P+AP GL L V Y
Sbjct: 188 NARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPEGLYLMQVDY 245
>gi|257092844|ref|YP_003166485.1| tRNA pseudouridine synthase A [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257045368|gb|ACV34556.1| tRNA pseudouridine synthase A [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 266
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 134/311 (43%), Gaps = 62/311 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R +AVEY G+ F G Q Q TV +++A +F G PV + + RTDAGVHA V
Sbjct: 2 RIALAVEYDGSGFRGWQTQPGGGTVQDAVQDALRQFAGVPVQVVSAGRTDAGVHATGQVV 61
Query: 119 HVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D VER R N FL S + V R V DFHARF A
Sbjct: 62 HFDAAVER-------------SMFAWVRGTNSFLPSA--VAVRWARPVADDFHARFSAYA 106
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y +++ V+ W+ LD+ MQ A +L+G DFS+FRA+ CQANSP
Sbjct: 107 RRYRYLLINRAHRTGVWNGRVGWY-HHPLDVGTMQAAAHLLLGERDFSAFRAAECQANSP 165
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++ + E HV F +E
Sbjct: 166 VKVMREAHVRRFGDLIAF------------------------------------DFE--- 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY-- 354
A +FL+H VR +VG L VG G+ + +L A A+P A GL L V+Y
Sbjct: 187 -ASAFLHHMVRNLVGSLVHVGQGKRPPEWIGELLAAGDRRLAAPTFAAAGLYLFAVRYPP 245
Query: 355 --DLPEDDQTD 363
LP DQT+
Sbjct: 246 ELGLPSGDQTN 256
>gi|430853259|ref|ZP_19470989.1| tRNA pseudouridine synthase A [Enterococcus faecium E1258]
gi|430541081|gb|ELA81258.1| tRNA pseudouridine synthase A [Enterococcus faecium E1258]
Length = 248
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 136/300 (45%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D +++P E + R A++ QS DI V V V DFHAR+ +E+
Sbjct: 63 IHFDY---PEKRPLERM--------RFALD--TQSPEDIAVRQVEIVSEDFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|445498542|ref|ZP_21465397.1| tRNA pseudouridine synthase A [Janthinobacterium sp. HH01]
gi|444788537|gb|ELX10085.1| tRNA pseudouridine synthase A [Janthinobacterium sp. HH01]
Length = 267
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 140/304 (46%), Gaps = 58/304 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R I V+Y GT ++G QKQ + TV LE+A KF P++ + + RTD GVHA
Sbjct: 1 MKRIAIGVQYDGTAWNGYQKQADGHTVQDKLEQALEKFARVPLATTCAGRTDTGVHALEQ 60
Query: 117 VCHVDVERISK-----RKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHAR 171
V H D E + R LPP S VR A Q +GD V D FHAR
Sbjct: 61 VVHFDTELVRDTHSWVRGVNAFLPP--SIAVRWAK----QLDGDPSVNDF------FHAR 108
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
F A+ RTY Y + + P + E RA LD+ M++A L+G HDF++FRA+ C
Sbjct: 109 FSARARTYHYVLYNNPTRSPLLE-GRAGFCFRPLDVELMRQAIPPLLGWHDFTAFRAAQC 167
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
QA SP++ + ++ + +G VF I
Sbjct: 168 QAKSPVKLMHDIQIKR-----------------------------HGELVVFTI------ 192
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
A +FL+H VR +VG L +GTG + ++L+ + AA+P GL L
Sbjct: 193 -----TANAFLHHMVRNLVGSLVYIGTGREQPEWLGQLLETRDRHAAAPTFMPDGLYLAK 247
Query: 352 VKYD 355
+ YD
Sbjct: 248 IDYD 251
>gi|366089434|ref|ZP_09455907.1| tRNA pseudouridine synthase A [Lactobacillus acidipiscis KCTC
13900]
Length = 290
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 139/319 (43%), Gaps = 66/319 (20%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF--IGQPVSISLSSRTDAGVHAASN 116
RY I + Y GTRF+G Q Q RTV VLE+A +K + ++I S RTD+GVHA
Sbjct: 4 RYKITIAYDGTRFAGFQSQPKQRTVQSVLEQALNKMSKFDEYITIFGSGRTDSGVHALGQ 63
Query: 117 VCHVDVERISKRKPGEVLPPHD--SSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H D PHD + + R +N L DI + D + VP FHAR+ A
Sbjct: 64 VAHFDF-------------PHDMPADAMLRGLNSMLPL--DIEIVDCQIVPQTFHARYEA 108
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ Y YR+ S + F++ H LD+ +++A +VG HDFSSF ASG Q
Sbjct: 109 HAKRYMYRV-SRSWFIDPFKRFYTGHYKYPLDIERIKQAMGDVVGTHDFSSFVASGSQTK 167
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
S +RT+ E V E D ++ EV
Sbjct: 168 SHVRTIYEATVRE--------------------DQANN--------------------EV 187
Query: 295 IAR--ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
I FLY+QVR++V L +G V D R+ + K A APA GL L V
Sbjct: 188 IFEFCGNGFLYNQVRIMVATLLEIGNKRRPVHDFLRLYEVKDRNQARETAPASGLYLKEV 247
Query: 353 KYDLPEDDQTDAAESLETC 371
Y Q E +TC
Sbjct: 248 YY----GQQAQQLEKKDTC 262
>gi|431210693|ref|ZP_19500979.1| tRNA pseudouridine synthase A [Enterococcus faecium E1620]
gi|431764935|ref|ZP_19553461.1| tRNA pseudouridine synthase A [Enterococcus faecium E4215]
gi|430570552|gb|ELB09501.1| tRNA pseudouridine synthase A [Enterococcus faecium E1620]
gi|430629706|gb|ELB66095.1| tRNA pseudouridine synthase A [Enterococcus faecium E4215]
Length = 248
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V DFHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVNIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|39933700|ref|NP_945976.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris CGA009]
gi|42559720|sp|P60352.1|TRUA_RHOPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|39647546|emb|CAE26067.1| putative tRNA-pseudouridine synthase [Rhodopseudomonas palustris
CGA009]
Length = 248
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 137/299 (45%), Gaps = 53/299 (17%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
R+ RY + +EY G F G Q Q +V G LE A G+ V + + RTDAGVHA
Sbjct: 3 RMPRYKLTIEYDGAPFCGWQLQPALPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALG 62
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V HVD+ + P + +R A+N L+ + V VP F ARF A
Sbjct: 63 QVAHVDIPK-----------PFRADKLRDALNAHLRPN-PVAVLAAEIVPDTFEARFSAV 110
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI + L+ + + W V + LD AM A +VL+G H+F++FR + CQA S
Sbjct: 111 RRHYRYRIANRRSNLA-LDLGKVWRVPKPLDTDAMHRAAQVLIGKHNFTTFRDTECQAAS 169
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P +TLD L V IR + ++I
Sbjct: 170 PEKTLDVLDV---------------------------------------IRDGD-AVDII 189
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARS+L+ QVR +VG L VG G T D+ L A+ +A P+AP GL L V Y
Sbjct: 190 TNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPEGLYLMQVDY 248
>gi|152984048|ref|YP_001347395.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA7]
gi|452881429|ref|ZP_21958189.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa VRFPA01]
gi|150959206|gb|ABR81231.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA7]
gi|452182352|gb|EME09370.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa VRFPA01]
Length = 285
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 140/309 (45%), Gaps = 63/309 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ R + VEY G+R+ G Q+Q +V LE A K + V + + RTDA VHA+
Sbjct: 17 VSRIALGVEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAESVGVICAGRTDAAVHASG 76
Query: 116 NVCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D VER P + V+ N GDI VT R +P+ FHARF
Sbjct: 77 QVVHFDTAVER-----------PLKAWVMGTNAN----LPGDISVTWARVMPAHFHARFS 121
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M+EA +VLVG HDF+SFRA CQA
Sbjct: 122 AMARRYRYAIYNDPIRPAHMAEEVTWN-HRPLDIERMREAAQVLVGTHDFTSFRAVQCQA 180
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ + + E +G V IR
Sbjct: 181 RSPVKTMHHVRLLE-----------------------------HGRLIVLDIRGN----- 206
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+FL+H VR I GVL +G GE + + +L+A+ A A GL L V+
Sbjct: 207 ------AFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYLVRVE 260
Query: 354 Y----DLPE 358
Y DLPE
Sbjct: 261 YPGEFDLPE 269
>gi|429462898|ref|YP_007184361.1| hypothetical protein CKCE_0405 [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|429338412|gb|AFZ82835.1| hypothetical protein CKCE_0405 [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
Length = 632
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 137/302 (45%), Gaps = 56/302 (18%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG--QPVSISLSSRTDAGVH 112
+R+ R + + Y G+ F G Q Q +C+++ +LE A KFI + V + RTD GVH
Sbjct: 365 RRMLRIALGLSYNGSFFYGWQSQPHCQSIQDILEIAISKFISVDEKVKTICAGRTDRGVH 424
Query: 113 AASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
A S + H D +I + V R VN FL DI + + V +DFHARF
Sbjct: 425 AISQIVHFDT-KIERSMTSWV----------RGVNAFLPK--DISIHWAKSVTTDFHARF 471
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
A R Y Y + G S++ W ELD+ M ++ L+G HDFSSFRAS CQ
Sbjct: 472 SATSRKYTYVLYCGSVRPSIYHDLVGW-CMYELDIDKMIDSSNYLIGLHDFSSFRASRCQ 530
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
+N+ +R + + + NG +F I
Sbjct: 531 SNTSVREIYSFDIKK-----------------------------NGSFIIFTI------- 554
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
A SFLYH VR IVGVL +G ++ ++ +L+ K + A+P GL L V
Sbjct: 555 ----EANSFLYHMVRNIVGVLIEIGRSIKSIEWMKELLEIKNRSFAAPTFSPHGLYLFSV 610
Query: 353 KY 354
KY
Sbjct: 611 KY 612
>gi|403387615|ref|ZP_10929672.1| tRNA pseudouridine synthase A [Clostridium sp. JC122]
Length = 245
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 140/305 (45%), Gaps = 67/305 (21%)
Query: 57 IQRYLIAVEYIGTRFSGSQK-QLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
++ + I +EY G+R+ G Q+ Q N T+ G +E K G V + RTDAGVHA +
Sbjct: 1 MKNFKITIEYDGSRYKGWQRLQDNENTIQGKIENVLTKLCGHNVQVVGCGRTDAGVHAEN 60
Query: 116 NV------CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
C + E +S E LP DI+V D++ V FH
Sbjct: 61 YTANFYTDCMLSEEMMSDYLY-EFLPE------------------DIVVKDIKEVGERFH 101
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
+R+ A+ +TY Y+I +G +VF++ +H+ E+LDL AM++A +VL+G HDF SF
Sbjct: 102 SRYNAKSKTYVYKINNGKFR-NVFDRKYIYHIDEKLDLDAMKKASEVLIGTHDFQSF--- 157
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
T L S ++ I+ I+K +
Sbjct: 158 ---------------------TTLKSKKKSTVKTINYIN----------------IKKDN 180
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
E+ FL+H VR+IVG L VG G L +DVE+IL K A P+A + GL L
Sbjct: 181 DYIEIEMNGDGFLWHMVRIIVGTLLEVGKGNLKHNDVEKILNMKKRQDAGPIAQSKGLFL 240
Query: 350 GFVKY 354
V+Y
Sbjct: 241 RNVEY 245
>gi|384086462|ref|ZP_09997637.1| tRNA pseudouridine synthase A [Acidithiobacillus thiooxidans ATCC
19377]
Length = 275
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 138/303 (45%), Gaps = 60/303 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + VEY G F G Q+QL +V LEEA + G + ++++ RTD GVHA V
Sbjct: 15 RWALGVEYDGNGFCGWQRQLGQASVQQSLEEALSRLAGTAIPVTVAGRTDTGVHALCQVV 74
Query: 119 HVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D V+R ++ RA N +L + V + V + FHARF A
Sbjct: 75 HFDAPVQRSAESW-------------LRATNTYLPD--GVAVRWAQPVSAHFHARFSATA 119
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y IL+ E +++ AW V L + MQ A +L+G HDFS+FRAS CQANSP
Sbjct: 120 RRYRYVILNRREKSALWRHHTAW-VYSPLAIEPMQVAADLLLGTHDFSAFRASSCQANSP 178
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+R+L L VS+ L SID A
Sbjct: 179 VRSLHRLTVSQRGD-------------LISID---------------------------A 198
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
A FL+H VR + GVL A+G G+ + +L ++ A AP GL FV
Sbjct: 199 EANGFLHHMVRNLAGVLIAIGRGDQSPQWAAEVLASRDRCQAGVTAPPGGLY--FVAPRY 256
Query: 357 PED 359
P++
Sbjct: 257 PDE 259
>gi|260558318|ref|ZP_05830514.1| tRNA pseudouridine synthase [Enterococcus faecium C68]
gi|261207023|ref|ZP_05921712.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6]
gi|289565342|ref|ZP_06445792.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF]
gi|294615363|ref|ZP_06695236.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636]
gi|294618289|ref|ZP_06697870.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679]
gi|424791183|ref|ZP_18217664.1| tRNA pseudouridine synthase A [Enterococcus faecium V689]
gi|424965709|ref|ZP_18379626.1| tRNA pseudouridine synthase A [Enterococcus faecium P1190]
gi|424970217|ref|ZP_18383746.1| tRNA pseudouridine synthase A [Enterococcus faecium P1139]
gi|424976158|ref|ZP_18389264.1| tRNA pseudouridine synthase A [Enterococcus faecium P1123]
gi|425038374|ref|ZP_18442993.1| tRNA pseudouridine synthase A [Enterococcus faecium 513]
gi|425060468|ref|ZP_18463762.1| tRNA pseudouridine synthase A [Enterococcus faecium 503]
gi|430820873|ref|ZP_19439494.1| tRNA pseudouridine synthase A [Enterococcus faecium E0045]
gi|430823302|ref|ZP_19441874.1| tRNA pseudouridine synthase A [Enterococcus faecium E0120]
gi|430826412|ref|ZP_19444595.1| tRNA pseudouridine synthase A [Enterococcus faecium E0164]
gi|430828802|ref|ZP_19446917.1| tRNA pseudouridine synthase A [Enterococcus faecium E0269]
gi|430850728|ref|ZP_19468485.1| tRNA pseudouridine synthase A [Enterococcus faecium E1185]
gi|430866335|ref|ZP_19481612.1| tRNA pseudouridine synthase A [Enterococcus faecium E1574]
gi|430890779|ref|ZP_19484469.1| tRNA pseudouridine synthase A [Enterococcus faecium E1575]
gi|431380484|ref|ZP_19510865.1| tRNA pseudouridine synthase A [Enterococcus faecium E1627]
gi|431695892|ref|ZP_19524786.1| tRNA pseudouridine synthase A [Enterococcus faecium E1904]
gi|431743996|ref|ZP_19532869.1| tRNA pseudouridine synthase A [Enterococcus faecium E2071]
gi|431747207|ref|ZP_19536006.1| tRNA pseudouridine synthase A [Enterococcus faecium E2134]
gi|260075492|gb|EEW63798.1| tRNA pseudouridine synthase [Enterococcus faecium C68]
gi|260078651|gb|EEW66353.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6]
gi|289162832|gb|EFD10682.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF]
gi|291591737|gb|EFF23373.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636]
gi|291595383|gb|EFF26695.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679]
gi|402919941|gb|EJX40500.1| tRNA pseudouridine synthase A [Enterococcus faecium V689]
gi|402942930|gb|EJX61471.1| tRNA pseudouridine synthase A [Enterococcus faecium P1190]
gi|402962420|gb|EJX79362.1| tRNA pseudouridine synthase A [Enterococcus faecium P1139]
gi|402970284|gb|EJX86639.1| tRNA pseudouridine synthase A [Enterococcus faecium P1123]
gi|403019740|gb|EJY32323.1| tRNA pseudouridine synthase A [Enterococcus faecium 513]
gi|403042512|gb|EJY53459.1| tRNA pseudouridine synthase A [Enterococcus faecium 503]
gi|430439133|gb|ELA49511.1| tRNA pseudouridine synthase A [Enterococcus faecium E0045]
gi|430442400|gb|ELA52445.1| tRNA pseudouridine synthase A [Enterococcus faecium E0120]
gi|430445039|gb|ELA54826.1| tRNA pseudouridine synthase A [Enterococcus faecium E0164]
gi|430482786|gb|ELA59887.1| tRNA pseudouridine synthase A [Enterococcus faecium E0269]
gi|430535087|gb|ELA75510.1| tRNA pseudouridine synthase A [Enterococcus faecium E1185]
gi|430551563|gb|ELA91314.1| tRNA pseudouridine synthase A [Enterococcus faecium E1574]
gi|430555827|gb|ELA95356.1| tRNA pseudouridine synthase A [Enterococcus faecium E1575]
gi|430582352|gb|ELB20779.1| tRNA pseudouridine synthase A [Enterococcus faecium E1627]
gi|430597845|gb|ELB35627.1| tRNA pseudouridine synthase A [Enterococcus faecium E1904]
gi|430606059|gb|ELB43431.1| tRNA pseudouridine synthase A [Enterococcus faecium E2071]
gi|430606736|gb|ELB44074.1| tRNA pseudouridine synthase A [Enterococcus faecium E2134]
Length = 248
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V DFHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|344940624|ref|ZP_08779912.1| tRNA pseudouridine synthase A [Methylobacter tundripaludum SV96]
gi|344261816|gb|EGW22087.1| tRNA pseudouridine synthase A [Methylobacter tundripaludum SV96]
Length = 267
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 132/298 (44%), Gaps = 54/298 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R ++ +EY G+ FSG Q Q + R+V VLE+A K PV++ + RTD GVHA
Sbjct: 1 MTRIVLGIEYDGSGFSGWQWQTHQRSVQQVLEQALSKVANHPVTVQCAGRTDTGVHALEQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D ++ + VL + + D+ +T V+ DFHAR+ A
Sbjct: 61 VVHFDA-KVERELHTWVLGGNSN------------LPDDVRITWVKPAVGDFHARYSAIA 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y IL+ P ++ WH LD M A + L+G HDFS+FRA GCQ+ SP
Sbjct: 108 RFYRYVILNRPIKSALLRNQATWH-HNPLDADKMHRAAQHLIGKHDFSTFRAQGCQSKSP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
R E++ +V D V+ I
Sbjct: 167 CR---EMYFIDV--------YRDDDKVIIDIS---------------------------- 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A +FL+H VR I GVL +G G+ S + +L+ K AP GL LG V Y
Sbjct: 188 -ANAFLHHMVRNIAGVLMDIGAGKQDESWTQELLEVKNRKLGGVTAPPYGLYLGAVYY 244
>gi|365089538|ref|ZP_09328311.1| tRNA pseudouridine synthase A [Acidovorax sp. NO-1]
gi|363416668|gb|EHL23769.1| tRNA pseudouridine synthase A [Acidovorax sp. NO-1]
Length = 273
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 134/291 (46%), Gaps = 42/291 (14%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + V Y G +SG Q QL+ T+ LE A +F PVS + RTDAGVH
Sbjct: 1 MTRVALGVSYNGQAYSGWQSQLSGNTIQDKLEAALGRFATHPVSTLCAGRTDAGVHGLMQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D +P SS V R N FL + DI V + VP FHAR A
Sbjct: 61 VVHFDTH---LNRPA-------SSWV-RGTNTFLPA--DIAVQWAQPVPDGFHARASAVA 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y +L P SV W V LD +AM++A L+G HDF+SFRAS CQA +P
Sbjct: 108 RRYSYVLLQSPVRPSVDAGRVGW-VFHPLDHQAMRQAAHYLLGEHDFTSFRASACQAKTP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL + ++ + + P L G + +E
Sbjct: 167 VKTLQRIDITR-------RGMGEPHPEL-------------------GWSPCYWRFEF-- 198
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
A +FL+H +R I+G L AVG G + ++L AK+ AA+P GL
Sbjct: 199 EANAFLHHMIRNIMGCLIAVGQGNQPPEWIAQVLAAKSRDAAAPTFSPDGL 249
>gi|334128709|ref|ZP_08502590.1| tRNA pseudouridine synthase A [Centipeda periodontii DSM 2778]
gi|333386446|gb|EGK57660.1| tRNA pseudouridine synthase A [Centipeda periodontii DSM 2778]
Length = 258
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 135/308 (43%), Gaps = 59/308 (19%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVV-GVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
R + ++ V Y GT + G Q+Q V VLE A K G+ V ++ + RTDAGVHA
Sbjct: 4 RARNLVLTVAYDGTNYHGFQRQTPPVVAVQNVLERALAKVCGEQVELAAAGRTDAGVHAY 63
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V + + R P E LP RAVN L DI+VT DF AR A
Sbjct: 64 GQVVNFFTD---GRIPVERLP--------RAVNGLLPP--DIVVTKAWEAQRDFSARHAA 110
Query: 175 QERTYFYRI--LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+ Y YR+ + P P F ++ AW + LD AM+ A +LVG HD+SSFRA+G
Sbjct: 111 TGKAYAYRLEECTIPNP---FTRNYAWQIFRPLDHAAMRAALSMLVGTHDYSSFRAAGGA 167
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
SP+RTLDE+ + E + +
Sbjct: 168 PMSPVRTLDEIRLDE---------------------------------------EGAGRF 188
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
FLYH VR I+ + VG G ++V I A ASP APACGL L V
Sbjct: 189 SCYLHGNGFLYHMVRNIMSTVVNVGLGRISVERFAAIFAACDRRLASPTAPACGLYLLRV 248
Query: 353 KYDLPEDD 360
Y EDD
Sbjct: 249 DYG-NEDD 255
>gi|257885664|ref|ZP_05665317.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|293553909|ref|ZP_06674515.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039]
gi|425058236|ref|ZP_18461622.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
gi|430839325|ref|ZP_19457266.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0688]
gi|430858980|ref|ZP_19476598.1| tRNA pseudouridine synthase A [Enterococcus faecium E1552]
gi|257821520|gb|EEV48650.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|291601961|gb|EFF32207.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039]
gi|403038766|gb|EJY49963.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
gi|430490783|gb|ELA67279.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0688]
gi|430544499|gb|ELA84528.1| tRNA pseudouridine synthase A [Enterococcus faecium E1552]
Length = 248
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V DFHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|399911407|ref|ZP_10779721.1| tRNA pseudouridine synthase A [Halomonas sp. KM-1]
Length = 312
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 130/298 (43%), Gaps = 56/298 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + VEY G+ + G Q+ + +V G LE A + QPV++ S RTD+GVHA V
Sbjct: 16 RLAMGVEYDGSAYCGWQRLKHAASVQGELERALCRVASQPVTVHASGRTDSGVHATRQVV 75
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D P VN L D+ V VR VP DFHARF+A R
Sbjct: 76 HFDAP-----------APRSEKAWVFGVNANLAR--DVAVRWVREVPDDFHARFKALARR 122
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y IL+ V E+ + LD AM A + LVG HDFSSFRA+GCQ+ +P R
Sbjct: 123 YRYLILN-QMSRPVLERANVTWCRDPLDADAMHRAAQALVGEHDFSSFRAAGCQSKTPWR 181
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-AR 297
LH EV ++H V+ +
Sbjct: 182 ---HLHFIEV--------------------------------------RRHGPLVVVDVQ 200
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+FL+H VR IVG L +VG GE + +L K T + APACGL YD
Sbjct: 201 GNAFLHHMVRNIVGALVSVGRGEQGEGYLAELLALKDRTLSDVTAPACGLHFVDSLYD 258
>gi|376259837|ref|YP_005146557.1| pseudouridylate synthase I [Clostridium sp. BNL1100]
gi|373943831|gb|AEY64752.1| pseudouridylate synthase I [Clostridium sp. BNL1100]
Length = 245
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 135/293 (46%), Gaps = 53/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
I +EY GT + G Q Q N +TV V+++A K +G+ V ++ SRTD GVHA V H
Sbjct: 6 ITIEYDGTDYHGWQVQKNAKTVQEVIQKAISKLLGEEVGVTGCSRTDVGVHAYGQVAHFL 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
E + PG+ A+N+ L DI++ V +FHAR+ + + Y Y
Sbjct: 66 TE---SQIPGDKFS--------YAINNLLPD--DIVIKHSEEVTGEFHARYSTKGKKYRY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P P S ++R+ HV +L++ MQ+A + +G HDF++F+A+G Q S +R +
Sbjct: 113 LIYNAPHP-SAIMRNRSCHVRPKLNIAQMQKATEYFIGEHDFAAFQATGGQVRSTVREIY 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
+ VSE ++ + F
Sbjct: 172 SMEVSEKEDNMIYIEVT---------------------------------------GNGF 192
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+I G L VG G+L S++ ++ T A APA GL L + Y
Sbjct: 193 LYNMVRIIAGTLIYVGMGKLHESEIPSLIAGLDRTKAGKTAPAQGLYLMEIYY 245
>gi|390949320|ref|YP_006413079.1| pseudouridylate synthase I [Thiocystis violascens DSM 198]
gi|390425889|gb|AFL72954.1| pseudouridylate synthase I [Thiocystis violascens DSM 198]
Length = 268
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 135/300 (45%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQ-KQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+ F G Q +Q RTV LE A + PVS+ + RTDAGVHA V
Sbjct: 5 RIALGVEYDGSDFRGWQTQQPGVRTVQTCLEAALSRVADHPVSVICAGRTDAGVHALEQV 64
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H E ++R+ S V+ VN D+ V V +DFHARF A R
Sbjct: 65 VHF--ETWAQRR-------ERSWVLGANVN----LPPDVAVRWAHPVEADFHARFSAMAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI+ S +DRA V E LD MQ A LVG HDFSSFRA CQA SP+
Sbjct: 112 HYRYRIMVQ-RARSPLRRDRAVWVHEPLDRARMQLAAAALVGEHDFSSFRAVACQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
R + L +SE QD ++ IR
Sbjct: 171 RRIHYLELSE-----------QD--------------------DLLTIRVG--------- 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A FL+H VR I GVL A+G G+ V +L+ + T A AP GL FV+ D P
Sbjct: 191 ANGFLHHMVRNIAGVLIAIGRGDAPVDWTRELLEVRDRTLAGVTAPPQGLY--FVRADYP 248
>gi|430836397|ref|ZP_19454378.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|431506867|ref|ZP_19515693.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
gi|430488524|gb|ELA65195.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|430587254|gb|ELB25487.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
Length = 248
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V DFHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVENVSEDFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|306840229|ref|ZP_07473004.1| tRNA pseudouridine synthase A [Brucella sp. BO2]
gi|306289834|gb|EFM61013.1| tRNA pseudouridine synthase A [Brucella sp. BO2]
Length = 207
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 123/255 (48%), Gaps = 53/255 (20%)
Query: 101 ISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVT 159
+S + RTDAGVHA + V HVD+ + + VR AVN H + ++ I +
Sbjct: 1 MSAAGRTDAGVHATAQVAHVDLAK-----------DWGAGKVRDAVNAHLVMADERISIL 49
Query: 160 DVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVG 219
+V F ARF A+ R Y YRI + PL+V + RAW V ++LD AM EA + L+G
Sbjct: 50 NVEKTTDTFDARFSARARHYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLG 108
Query: 220 CHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGG 279
HDF++FRA+ CQA SP++TLD L V+ NG
Sbjct: 109 EHDFTTFRATQCQAKSPVKTLDRLDVTR-----------------------------NGD 139
Query: 280 SNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAAS 339
E+ ARSFL++QVR G L VG G T D++ L+A+ A
Sbjct: 140 -----------MIEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACG 188
Query: 340 PMAPACGLSLGFVKY 354
+AP GL L V Y
Sbjct: 189 QVAPPYGLYLVGVDY 203
>gi|387783250|ref|YP_006069333.1| tRNA pseudouridine synthase A [Streptococcus salivarius JIM8777]
gi|338744132|emb|CCB94498.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Streptococcus salivarius
JIM8777]
Length = 248
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 134/298 (44%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q N R++ LE+ + G PV++ + RTDAGVHA V
Sbjct: 3 RYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + +R P ++ D+ Q DI V + V +FHAR+ +
Sbjct: 63 IHFDLPQ--ERDPEKLRFGLDT-----------QCPDDIDVVSIELVSEEFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQASVS--------------------------------------IDEKTGFYIFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS V+ +L+++ A P A GL L ++Y+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRNRNLAGPTAAGNGLYLKEIRYE 248
>gi|349575600|ref|ZP_08887511.1| tRNA pseudouridine synthase A [Neisseria shayeganii 871]
gi|348012868|gb|EGY51804.1| tRNA pseudouridine synthase A [Neisseria shayeganii 871]
Length = 278
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 137/301 (45%), Gaps = 59/301 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+R + + Y G RF G QKQ + TV LEEA + G+PVS+ + RTD GVHA +
Sbjct: 13 FRRRALWLSYDGGRFFGWQKQADGVATVQAALEEALSRMAGEPVSVVAAGRTDTGVHATA 72
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D +P D + VR H EG + V V+ VP FHARF A
Sbjct: 73 QVVHFDSR---ADRP-------DQAWVRGVNTHL--PEG-VAVWQVQSVPDAFHARFDAC 119
Query: 176 ERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
R Y Y + S P PL V RA LDL AM++A +LVG DFS FRA+ CQA
Sbjct: 120 GRRYRYVLQSAPVRSPLLV---GRAGWTHYRLDLEAMRQAAALLVGEQDFSCFRAAQCQA 176
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T L+ + +P L ++D
Sbjct: 177 KSPVKT-------------LYRATLGGTPSLITLD------------------------- 198
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+FL+H VR I+G L VG+G L+V+ +L A++ A P GL L V
Sbjct: 199 --LHGNAFLHHMVRNIMGALVYVGSGRLSVAGFAELLAARSRLQAPPTFMPDGLYLTGVD 256
Query: 354 Y 354
Y
Sbjct: 257 Y 257
>gi|340361286|ref|ZP_08683716.1| tRNA pseudouridine synthase A [Neisseria macacae ATCC 33926]
gi|339888805|gb|EGQ78236.1| tRNA pseudouridine synthase A [Neisseria macacae ATCC 33926]
Length = 284
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 146/309 (47%), Gaps = 58/309 (18%)
Query: 48 TEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSR 106
TE +ST K IQR+ + + Y G+RF G QKQ + TV VLE A + G+ + ++ R
Sbjct: 17 TESLST-KTIQRWALTLSYDGSRFYGWQKQADGLPTVQTVLESALSQIAGETIRTIVAGR 75
Query: 107 TDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPS 166
TD GVHA + V H D V+ P + V R VN +L EG + V + V
Sbjct: 76 TDTGVHATAQVVHFDTS---------VIRPEQAWV--RGVNAYL-PEG-VAVLFAQQVAP 122
Query: 167 DFHARFRAQERTYFYRILSGPEPLSVFEKDRAW-HVTEELDLRAMQEACKVLVGCHDFSS 225
+FHARF A R Y Y + S P + + W H+ +LD MQ+A +L G HDFSS
Sbjct: 123 NFHARFDAYGRRYRYLLESSPVRSPILQGRVGWTHL--KLDPEKMQQAALLLEGEHDFSS 180
Query: 226 FRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGI 285
FRA+ CQA SP++T L+S+ +P +D
Sbjct: 181 FRAAECQAKSPVKT-------------LYSAKISGTPQFLKLD----------------- 210
Query: 286 RKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPAC 345
+FL+H VR I+G L VG+G L+VS + +++ ++ A P
Sbjct: 211 ----------LHGNAFLHHMVRNIMGALVYVGSGRLSVSGFQDLIEERSRLKAPPTFMPD 260
Query: 346 GLSLGFVKY 354
GL L V Y
Sbjct: 261 GLYLTGVDY 269
>gi|146337887|ref|YP_001202935.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. ORS 278]
gi|166228681|sp|A4YLC1.1|TRUA_BRASO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|146190693|emb|CAL74697.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Bradyrhizobium sp. ORS 278]
Length = 245
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 136/296 (45%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G F G Q Q +V GVLE A G P + S RTDAGVHA V
Sbjct: 3 RYKLTIEYDGAPFCGWQLQETLPSVQGVLEAAVQATCGVPTRVHGSGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D+++ E P +R A+N L+ + V D + VP F ARF A++R
Sbjct: 63 HCDIDK-------EFRP----DKLRDALNAHLRPN-PVAVLDAQIVPDTFEARFSARKRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI++ L+ E R W V + LD AM A + L+G HDF++FR + CQA SP +
Sbjct: 111 YRYRIVNRRSNLA-LEVGRVWRVPQRLDSDAMHVAAQRLIGKHDFTTFRDTECQAKSPEK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD+L V + + +I A
Sbjct: 170 TLDQLDVV----------------------------------------RDGDAVTIITSA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RS+L+ QVR +VG L VG G + D+ L A+ A +AP GL L V Y
Sbjct: 190 RSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARRRAACGVVAPPEGLYLVQVDY 245
>gi|92119152|ref|YP_578881.1| tRNA pseudouridine synthase A [Nitrobacter hamburgensis X14]
gi|123264920|sp|Q1QH76.1|TRUA_NITHX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91802046|gb|ABE64421.1| tRNA pseudouridine synthase A [Nitrobacter hamburgensis X14]
Length = 245
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 131/298 (43%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q N +V G LE A G V + + RTDAGVHA +
Sbjct: 1 MPRYKLTIEYDGGPFCGWQYQDNGPSVQGALEAAVKAICGDAVRVHGAGRTDAGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + P + +R +N L+ I V VP F ARF A
Sbjct: 61 VAHCDIAK-------HFAP----NRLRDGLNAHLRPH-PIGVLTAEIVPDTFEARFSALR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + L++ + W V LD AM A + L+G HDF++FR + CQA SP
Sbjct: 109 RHYVYRIANRRANLAI-DVGHVWRVPRPLDTLAMHAAAQRLIGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V N D + ++
Sbjct: 168 EKTLDQLDVVR----------NGD------------------------------TVTIVT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G + D+ L + A P+AP GL L V Y
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGHGRWSADDLSNALAERRREACGPVAPPDGLYLVRVDY 245
>gi|340778713|ref|ZP_08698656.1| tRNA pseudouridine synthase A [Acetobacter aceti NBRC 14818]
Length = 272
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 137/299 (45%), Gaps = 52/299 (17%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSS-RTDAGVHAASN 116
QR+ + +EY GT G Q+Q +V +LEEA + G S+++ RTDA VHA
Sbjct: 20 QRWAVKIEYDGTGLVGWQRQKTGLSVQQLLEEAASRMAGGRTVPSITAGRTDARVHATGQ 79
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D + P + VR +++ L+ ++V V + ARF A
Sbjct: 80 VAHLDFP---------ISLPLNPRAVRDGLSYHLKPH-PVVVLQAASVDPTWSARFSATR 129
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YR+L+ P + E R WHV LD+ AM A + L+G HDFS+FRA CQA SP
Sbjct: 130 RRYRYRLLNRPSRPGI-EAGRVWHVRHPLDVPAMHAAAQSLLGTHDFSTFRAVACQARSP 188
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD L V+ LF
Sbjct: 189 VRTLDRLDVTRGGEMILFD----------------------------------------V 208
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG L+ VG G + L+A+ A P AP+ GL L V YD
Sbjct: 209 EARSFLHHQVRNLVGTLQLVGCGRWDAERLRTALEARDRCAGGPTAPSEGLYLVGVDYD 267
>gi|296535340|ref|ZP_06897543.1| tRNA-pseudouridine synthase I, partial [Roseomonas cervicalis ATCC
49957]
gi|296264339|gb|EFH10761.1| tRNA-pseudouridine synthase I [Roseomonas cervicalis ATCC 49957]
Length = 267
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 140/309 (45%), Gaps = 54/309 (17%)
Query: 52 STNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAG 110
S + + RY + VE+ G F G Q+Q + +V VLEEA GQP + + RTD+G
Sbjct: 10 SASAEMPRYALLVEFDGAPFVGWQRQPSGLSVQQVLEEAASPLNQGQPAATQAAGRTDSG 69
Query: 111 VHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHA 170
VHA V +D+ + D +R A+N+ + + V V P+++ A
Sbjct: 70 VHAEGMVVQIDIAQAL-----------DPVRLREALNYHTRPH-PVAVLGVAVPPAEWSA 117
Query: 171 RFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASG 230
RF R Y YRIL+ P + R WHV LD AM A + L+G HDFS+FRA+
Sbjct: 118 RFSCIGRAYRYRILNR-RPRPALQAGRVWHVGPALDAAAMHAAAQGLLGKHDFSAFRAAS 176
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA +RTLD L V R++
Sbjct: 177 CQAKHALRTLDRLDV----------------------------------------RREGE 196
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
+ ARSFL+HQVR +VG L VG G V R+L+A+ + A APA GL+
Sbjct: 197 EVVIHTAARSFLHHQVRNMVGTLAQVGLGRQGVDWPRRLLEARERSQAGQTAPAEGLTFL 256
Query: 351 FVKYDLPED 359
+Y P D
Sbjct: 257 EARYQAPLD 265
>gi|118602946|ref|YP_904161.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567885|gb|ABL02690.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 247
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 138/294 (46%), Gaps = 59/294 (20%)
Query: 62 IAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+ V Y+GT F G Q Q N RTV V+E+A PV + S RTDAGVHA V H
Sbjct: 5 LGVAYLGTNFHGWQCQKPNIRTVQQVVEQALSSVANHPVRVFCSGRTDAGVHATCQVIHF 64
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ KR+ L ++++ D+ T V+ V +FHARF A R Y
Sbjct: 65 ETN--IKRENKVWLFGGNANL-----------PSDVNFTWVKHVNDNFHARFSAIARQYN 111
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y+I + S+ W +++LD+ AM +A K L+G H+FS+FR S CQA S I+T+
Sbjct: 112 YKIHNTKVRCSIITAHSLWE-SKKLDIMAMNKASKYLIGKHNFSAFRGSLCQAKSSIKTI 170
Query: 241 DELHVSEVVSTALFSSINQ-DSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARAR 299
+ F +N+ D +L I +A
Sbjct: 171 E------------FIKLNKCDDNILLDI-----------------------------KAD 189
Query: 300 SFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+FL+H VR IVG L VG GE ++ V+ IL K A+P AP+ GL F+K
Sbjct: 190 AFLHHMVRNIVGTLLKVGKGEKSIEWVKEILDNKQRKQAAPAAPSHGLY--FIK 241
>gi|421491892|ref|ZP_15939254.1| TRUA [Morganella morganii subsp. morganii KT]
gi|455739730|ref|YP_007505996.1| tRNA pseudouridine synthase A [Morganella morganii subsp. morganii
KT]
gi|400193652|gb|EJO26786.1| TRUA [Morganella morganii subsp. morganii KT]
gi|455421293|gb|AGG31623.1| tRNA pseudouridine synthase A [Morganella morganii subsp. morganii
KT]
Length = 273
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 134/298 (44%), Gaps = 56/298 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY G+R+ G Q+Q +V G LE+A K +PVS+ + RTDAGVHA V H
Sbjct: 17 LGIEYDGSRYYGWQRQSEVASVQGCLEKALSKVAAEPVSVFCAGRTDAGVHATGQVVHFH 76
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ K + VN L DI V V+ VP +FHARF A R Y Y
Sbjct: 77 TAAVRK-----------DAAWTMGVNTHLPP--DIAVRWVKTVPENFHARFSATARRYRY 123
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + ++ K H LD + M EA + L+G +DFSSFRA+ CQ+ SP R +
Sbjct: 124 VIFNHRFRPAILSKGVT-HFHYPLDEKRMHEAAQSLLGENDFSSFRAAQCQSRSPWRNVM 182
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
++V+ Q V+ I +A +F
Sbjct: 183 HVNVTR-----------QGQYVIVDI-----------------------------KANAF 202
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPED 359
++H VR I G L VG G L VS + +L K T A APA GL L V D PE+
Sbjct: 203 VHHMVRNITGALLEVGCGNLPVSRMAELLALKDRTQAPATAPAEGLYL--VSVDYPEE 258
>gi|410086621|ref|ZP_11283329.1| tRNA pseudouridine synthase A [Morganella morganii SC01]
gi|409766841|gb|EKN50929.1| tRNA pseudouridine synthase A [Morganella morganii SC01]
Length = 273
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 134/298 (44%), Gaps = 56/298 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY G+R+ G Q+Q +V G LE+A K +PVS+ + RTDAGVHA V H
Sbjct: 17 LGIEYDGSRYYGWQRQSEVASVQGCLEKALSKVAAEPVSVFCAGRTDAGVHATGQVVHFH 76
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ K + VN L DI V V+ VP +FHARF A R Y Y
Sbjct: 77 TAAVRK-----------DAAWTMGVNTHLPP--DIAVRWVKTVPENFHARFSATARRYRY 123
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + ++ K H LD + M EA + L+G +DFSSFRA+ CQ+ SP R +
Sbjct: 124 VIFNHRFRPAILSKGVT-HFHYPLDEKRMHEAAQSLLGENDFSSFRAAQCQSRSPWRNVM 182
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
++V+ Q V+ I +A +F
Sbjct: 183 HVNVTR-----------QGQYVIVDI-----------------------------KANAF 202
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPED 359
++H VR I G L VG G L VS + +L K T A APA GL L V D PE+
Sbjct: 203 VHHMVRNITGALLEVGCGNLPVSRMAELLALKDRTLAPATAPAEGLYL--VSVDYPEE 258
>gi|387762152|ref|YP_006069129.1| tRNA pseudouridine synthase A [Streptococcus salivarius 57.I]
gi|339292919|gb|AEJ54266.1| tRNA pseudouridine synthase A [Streptococcus salivarius 57.I]
Length = 248
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 134/298 (44%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q N R++ LE+ + G PV++ + RTDAGVHA V
Sbjct: 3 RYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + +R P ++ D+ Q DI V + V +FHAR+ +
Sbjct: 63 VHFDLPQ--ERDPEKLRFGLDT-----------QCPDDIDVVSIELVSEEFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQASVS--------------------------------------IDEKTGFYIFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS V+ +L+++ A P A GL L ++Y+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTAAGNGLYLKEIRYE 248
>gi|251781741|ref|YP_002996043.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390370|dbj|BAH80829.1| phosphomethylpyrimidine kinase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 249
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 138/300 (46%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q+Q + RTV +E+ K QPV I + RTDAGVHA
Sbjct: 1 MTRYRATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASVQPVPIHGAGRTDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ + KR D +R A++ Q+ DI V D+ V DFH R++
Sbjct: 61 QVIHFDLPQ--KR---------DLEKLRFALD--TQTPADIDVVDLAIVADDFHCRYQKH 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY + + +G P + + A H LD+ MQEA K LVG HDF+ F A+G +
Sbjct: 108 SKTYEFLVDNG-RPKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSVEN 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E +++ QD D + L G+
Sbjct: 167 KVRTITE------------ATLVQD-------DKTGFLVFTFSGN--------------- 192
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + V ++ IL +K A P GL L ++Y+
Sbjct: 193 ----GFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGNGLYLKEIRYE 248
>gi|15672468|ref|NP_266642.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
Il1403]
gi|281490978|ref|YP_003352958.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
KF147]
gi|385830005|ref|YP_005867818.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
CV56]
gi|418038482|ref|ZP_12676811.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|13878837|sp|Q9CI80.1|TRUA_LACLA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|12723367|gb|AAK04584.1|AE006284_2 tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
Il1403]
gi|281374736|gb|ADA64256.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
KF147]
gi|326406013|gb|ADZ63084.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
CV56]
gi|354693130|gb|EHE92907.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 253
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 134/299 (44%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F+G Q Q N RTV +E+ K +PV + S RTD+GVHA
Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQKEIEKILTKLNSFEPVILQGSGRTDSGVHAFG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D++ G+V D +R ++ Q+ DI V V VP D+HAR++
Sbjct: 61 QVIHFDLK-------GKV---RDLERLRFGLD--TQTPADIAVKKVELVPDDWHARYQKH 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY Y L S F++ + L+ MQEA LVG HDF+ F ASG +
Sbjct: 109 EKTYEY-YLENSITRSPFQRHSKAYFRYPLNFERMQEAMSKLVGEHDFTGFTASGSSVDD 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ + + IR +++ I
Sbjct: 168 KVRTIYQAEI---------------------------------------IRLDEENFKFI 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
R FLY QVR +VG + +G + VS +++IL +K A P A GL L VKY
Sbjct: 189 FRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRDFAGPTAAPEGLYLKEVKY 247
>gi|315925222|ref|ZP_07921436.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621456|gb|EFV01423.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC
23263]
Length = 249
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 135/300 (45%), Gaps = 58/300 (19%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ + Y GTR++G Q+Q N ++ + +A G+ V++ + RTDAGVHA +
Sbjct: 6 LVIAYKGTRYAGWQRQQNAVSIDETIGDAIAAVTGERVTLYGAGRTDAGVHARGQRANF- 64
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ R P + P A+N L DI + VP+DFH+R+ A+E+TY Y
Sbjct: 65 --KTRVRMPADRFAP--------ALNAHLPR--DIRIQKSFEVPADFHSRYGAKEKTYCY 112
Query: 182 RILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRT 239
R+ + P +PL+ D WHV L++ AM+ VLVG HDF +F ASG A + +R
Sbjct: 113 RVWAAPVADPLT---DDFCWHVRFPLNVDAMRRGAAVLVGTHDFKTFMASGSGAKTTVRR 169
Query: 240 LDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARAR 299
+D + GI +K R
Sbjct: 170 IDAI----------------------------------------GIEQKGRMITFTFCGT 189
Query: 300 SFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPED 359
FLY+ VR+I G L +G+G + IL AK TAA APA GL+L V Y D
Sbjct: 190 GFLYNMVRIIAGTLVEMGSGRRDPESMAAILAAKGRTAAGATAPARGLTLEAVAYGEEND 249
>gi|374672511|dbj|BAL50402.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
IO-1]
Length = 253
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 134/299 (44%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F+G Q Q N RTV +E+ K +PV + S RTD+GVHA
Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLTKLNSFEPVILQGSGRTDSGVHAFG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D++ G+V D +R ++ Q+ DI V V VP D+HAR++
Sbjct: 61 QVIHFDLK-------GKV---RDLERLRFGLD--TQTPADIAVKKVELVPDDWHARYQKH 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY Y L S F++ + L+ MQEA LVG HDF+ F ASG +
Sbjct: 109 EKTYEY-YLENSITRSPFQRHSKAYFRYPLNFERMQEAMSKLVGEHDFTGFTASGSSVDD 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ + + IR +++ I
Sbjct: 168 KVRTIYQAEI---------------------------------------IRLDEENFKFI 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
R FLY QVR +VG + +G + VS +++IL +K A P A GL L VKY
Sbjct: 189 FRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRDFAGPTAAPEGLYLKEVKY 247
>gi|422348331|ref|ZP_16429224.1| tRNA pseudouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
gi|404659413|gb|EKB32264.1| tRNA pseudouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
Length = 268
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 133/296 (44%), Gaps = 54/296 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT F+G Q Q +C +V LE+A F+ + RTD GVHA V V
Sbjct: 5 LGIEYRGTGFNGWQIQPDCPSVQQALEDALETFLQVKTPTMCAGRTDTGVHAMQQV--VS 62
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+E + R P S V R +N +L + V R V DFHARF A+ RTY Y
Sbjct: 63 IETQADR-------PERSWV--RGLNTYLPP--GVAVRWARLVDDDFHARFSARSRTYEY 111
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P + + W V LD+ M+E LVG HDF+SFRAS CQA+ P+RT+
Sbjct: 112 WIYNDPVRSPILDDLTGW-VFRPLDVERMREGAACLVGEHDFTSFRASECQASGPVRTIR 170
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
L + G+R + A +F
Sbjct: 171 RLELERRGRL-------------------------------IGVRIE---------ANAF 190
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
L H VR IVG L VGTG VE +LKA++ AA+P GL L V Y+ P
Sbjct: 191 LQHMVRNIVGTLIYVGTGREKPEWVEEVLKARSRAAAAPTFSPNGLYLMGVGYEDP 246
>gi|258646098|ref|ZP_05733567.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
gi|260403476|gb|EEW97023.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
Length = 265
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 125/288 (43%), Gaps = 54/288 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
I + Y GT +SG Q+Q N TV +LE A K G ++ ++RTDAGVHA C
Sbjct: 6 ITLAYEGTAYSGFQRQENSITVQEILETALQKLTGTKTTLYFAARTDAGVHAYGQECTFY 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
E P D + A+N L DI VT+ R VP DF R +TY Y
Sbjct: 66 TESSI---------PGDRFIF--ALNILLPP--DIRVTESREVPYDFSVRRNNYGKTYGY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
+L+ + F K W +LD+ M++A +VL G HDF+SFR + SP+RT+
Sbjct: 113 -LLTEEKDCPPFFKRYTWQTGRKLDISKMEKAAEVLSGTHDFTSFRGNNSVPASPVRTIH 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
++ I KKH + + F
Sbjct: 172 DIR----------------------------------------IIKKHHFFHIFVTGEGF 191
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
LYH VR I G L GTG+LT D+ IL+AK APA GL L
Sbjct: 192 LYHMVRNIAGALADAGTGKLTPKDLREILEAKDRKFLGATAPAHGLCL 239
>gi|357236070|ref|ZP_09123413.1| tRNA pseudouridine synthase A [Streptococcus criceti HS-6]
gi|356884052|gb|EHI74252.1| tRNA pseudouridine synthase A [Streptococcus criceti HS-6]
Length = 248
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 131/298 (43%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G Q+Q R+V LE+ + G+PV + + RTD+GVHA V
Sbjct: 3 RYKAVISYDGTLFAGFQRQTKERSVQEELEKTLERLNSGRPVKVHGAGRTDSGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ ++ D +R ++ QS GDI V V+ V DFHAR+ +
Sbjct: 63 IHFDLSQV-----------RDEEKLRFGLD--TQSPGDIDVVSVQQVSDDFHARYNPHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + + A H +DL MQEA LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDTG-RPKNPMMRAYATHFPYAVDLGTMQEAMADLVGTHDFTGFTASGSSVQNKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ E V V T VF
Sbjct: 169 RTITEAKVERDVKTGFL---------------------------VFTF-----------S 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G + VS ++ IL+ K + A P A GL L + Y+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNARMPVSQIKTILETKDRSLAGPTAAGNGLYLKEITYE 248
>gi|82703035|ref|YP_412601.1| tRNA pseudouridine synthase A [Nitrosospira multiformis ATCC 25196]
gi|82411100|gb|ABB75209.1| tRNA pseudouridine synthase A [Nitrosospira multiformis ATCC 25196]
Length = 351
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 133/297 (44%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY G+ F G Q Q TV +E A + G+ + + + RTDAGVHA V
Sbjct: 58 RIAMVLEYDGSNFCGWQSQPGGNTVQDAVEAALSEIAGEAIRVVTAGRTDAGVHAIYQVL 117
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D ++R P ++ V R N L S I + DFHAR+ A ER
Sbjct: 118 HFDTR--AER-------PMNAWV--RGANALLPS--GIALLWASPTADDFHARYCALERC 164
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +L+ P + + W+ L L +MQ ++LVG HDFS+FRA+ CQA SP+R
Sbjct: 165 YLYLLLNHPVRPGLHQHRVGWY-HHPLRLESMQMGAQMLVGEHDFSAFRAAACQAKSPVR 223
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL +L V+ V + F RA
Sbjct: 224 TLTKLEVTRVGNMVAFE----------------------------------------LRA 243
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+FL+H VR IVG L VG G+ + ++L+ + A+P A GL L V YD
Sbjct: 244 NAFLHHMVRNIVGCLVYVGKGKFRPDWIGKLLENGKRSEAAPTFSASGLYLAGVAYD 300
>gi|228477786|ref|ZP_04062414.1| tRNA pseudouridine synthase A [Streptococcus salivarius SK126]
gi|228250478|gb|EEK09692.1| tRNA pseudouridine synthase A [Streptococcus salivarius SK126]
Length = 248
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 134/298 (44%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q N R++ LE+ + G PV++ + RTDAGVHA V
Sbjct: 3 RYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + +R P ++ D+ Q DI V + V +FHAR+ +
Sbjct: 63 IHFDLPQ--ERDPEKLRFGLDT-----------QCPDDIDVVSIELVSEEFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQASVS--------------------------------------IDEKTGFYIFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS V+ +L+++ A P A GL L ++Y+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTAAGNGLYLKEIRYE 248
>gi|406580853|ref|ZP_11056041.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD4E]
gi|406582789|ref|ZP_11057886.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD3E]
gi|406585103|ref|ZP_11060098.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD2E]
gi|406590682|ref|ZP_11065041.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD1E]
gi|410936048|ref|ZP_11367920.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD5E]
gi|404453484|gb|EKA00540.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD4E]
gi|404457526|gb|EKA04063.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD3E]
gi|404463085|gb|EKA08783.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD2E]
gi|404469056|gb|EKA13895.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD1E]
gi|410735639|gb|EKQ77548.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD5E]
Length = 248
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 129/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V DFHAR+ E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEVVSEDFHARYLVTEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRAIPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|20808627|ref|NP_623798.1| tRNA pseudouridine synthase A [Thermoanaerobacter tengcongensis
MB4]
gi|24212532|sp|Q8R7Y7.1|TRUA_THETN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|20517260|gb|AAM25402.1| Pseudouridylate synthase (tRNA psi55) [Thermoanaerobacter
tengcongensis MB4]
Length = 240
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 54/289 (18%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
++ +EY GT + G Q Q N TV VLE+A K G+ V++ SSRTD GVHA V +
Sbjct: 1 MLIIEYDGTNYHGWQYQKNAITVQEVLEKAIEKVTGEKVNLIGSSRTDTGVHALYQVANF 60
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ + P E LP A+N L D++V + V FHAR+ A+ + Y
Sbjct: 61 ---KTKTKIPPEKLP--------YALNAVLPD--DVVVVKAKEVDKSFHARYSARSKRYR 107
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y IL+ P+ ++ WHV LD+ AM++A G HDFS+F+ASG + +P++T+
Sbjct: 108 YLILNRQFPMPTM-RNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAFKASGNKKVNPVKTI 166
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
+L V K+ ++ A
Sbjct: 167 FDLTVE----------------------------------------KEGDLIKIEVEADG 186
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FLY+ VR+IVG L VG G++ ++ I+++K T A AP GL L
Sbjct: 187 FLYNMVRIIVGTLVYVGLGKIKAGEIPAIIESKDRTKAGITAPPQGLYL 235
>gi|220934425|ref|YP_002513324.1| tRNA pseudouridine synthase A [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995735|gb|ACL72337.1| tRNA pseudouridine synthase A [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 259
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 133/304 (43%), Gaps = 64/304 (21%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + VEY G+ F G Q QL R V +E+A + PVS+ + RTDAGVHA +
Sbjct: 1 MMRIALGVEYDGSGFCGWQTQLQGRAVQACVEQALSRVANHPVSVVCAGRTDAGVHATAQ 60
Query: 117 VCHVDVERISKRKPGEV-----LPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHAR 171
V H D E + + + LPP +I + + V +DF AR
Sbjct: 61 VIHFDTESVRTARSWVLGGNTHLPP------------------EISLLWAKEVDADFSAR 102
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
F A+ R Y Y IL+ V + +WH LD M A + L+G DF+SFRA GC
Sbjct: 103 FSARSRRYRYVILNRWVRPGVLHRKVSWH-HPPLDAERMHAAGQRLLGEWDFTSFRAVGC 161
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
QA SP+RTL L V+ R+
Sbjct: 162 QAKSPVRTLLSLSVT---------------------------------------RRGDFI 182
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
Y + A +FL+H VR I GVL AVG GE V V +L A+ T AP GL L
Sbjct: 183 Y-LDVHANAFLHHMVRNIAGVLMAVGEGERPVEWVSEVLHARDRTLGGVTAPPHGLYLVH 241
Query: 352 VKYD 355
V+Y+
Sbjct: 242 VEYE 245
>gi|293567901|ref|ZP_06679242.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071]
gi|427396968|ref|ZP_18889594.1| tRNA pseudouridine synthase A [Enterococcus durans FB129-CNAB-4]
gi|430843084|ref|ZP_19460986.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1050]
gi|430861262|ref|ZP_19478851.1| tRNA pseudouridine synthase A [Enterococcus faecium E1573]
gi|430952305|ref|ZP_19486348.1| tRNA pseudouridine synthase A [Enterococcus faecium E1576]
gi|430999188|ref|ZP_19488156.1| tRNA pseudouridine synthase A [Enterococcus faecium E1578]
gi|431234974|ref|ZP_19502997.1| tRNA pseudouridine synthase A [Enterococcus faecium E1622]
gi|431255642|ref|ZP_19504765.1| tRNA pseudouridine synthase A [Enterococcus faecium E1623]
gi|431303512|ref|ZP_19508359.1| tRNA pseudouridine synthase A [Enterococcus faecium E1626]
gi|447911605|ref|YP_007393017.1| tRNA pseudouridine synthase A [Enterococcus faecium NRRL B-2354]
gi|291589486|gb|EFF21293.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071]
gi|425722715|gb|EKU85609.1| tRNA pseudouridine synthase A [Enterococcus durans FB129-CNAB-4]
gi|430498138|gb|ELA74146.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1050]
gi|430550295|gb|ELA90092.1| tRNA pseudouridine synthase A [Enterococcus faecium E1573]
gi|430557440|gb|ELA96899.1| tRNA pseudouridine synthase A [Enterococcus faecium E1576]
gi|430563295|gb|ELB02524.1| tRNA pseudouridine synthase A [Enterococcus faecium E1578]
gi|430572834|gb|ELB11670.1| tRNA pseudouridine synthase A [Enterococcus faecium E1622]
gi|430577840|gb|ELB16420.1| tRNA pseudouridine synthase A [Enterococcus faecium E1623]
gi|430580153|gb|ELB18633.1| tRNA pseudouridine synthase A [Enterococcus faecium E1626]
gi|445187314|gb|AGE28956.1| tRNA pseudouridine synthase A [Enterococcus faecium NRRL B-2354]
Length = 248
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 129/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V DFHAR+ E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEVVSEDFHARYLVTEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|374310261|ref|YP_005056691.1| tRNA pseudouridine synthase A [Granulicella mallensis MP5ACTX8]
gi|358752271|gb|AEU35661.1| tRNA pseudouridine synthase A [Granulicella mallensis MP5ACTX8]
Length = 271
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 136/308 (44%), Gaps = 48/308 (15%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ + + + Y GT F G Q Q TV G L A G+ V S RTD+GVHA +
Sbjct: 1 MNHWKLTLSYDGTLFHGWQVQPELPTVQGSLALALKYVTGESVLPQGSGRTDSGVHALAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V +E +PP + ++RA+N L I+ ++ V FHAR A+
Sbjct: 61 VTSFALE--------TSIPPAN---LQRALNRALPPSIRILTAEL--VDESFHARHSARR 107
Query: 177 RTYFYRIL---SGPEP----LSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
+TY YRI + P S F AW +L + MQEA K L G HDF+SF AS
Sbjct: 108 KTYEYRIFERRTAASPSERICSPFLAPYAWDCRWQLAIEPMQEASKYLCGTHDFTSFAAS 167
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
P R L E S D + K PN + H
Sbjct: 168 -----DPERGLREE---------------------ESDDANGKAHGPNPVKTLLQAGWAH 201
Query: 290 RSYEVIAR--ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
++ R FL+H VR IVG L VG G L V ++ RIL A+ TAA P APACGL
Sbjct: 202 EDGLLVYRVTGSGFLHHMVRNIVGTLADVGRGSLAVDEIPRILAARNRTAAGPTAPACGL 261
Query: 348 SLGFVKYD 355
L V+YD
Sbjct: 262 FLHSVEYD 269
>gi|451811356|ref|YP_007447811.1| tRNA pseudouridine synthase A [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776514|gb|AGF47513.1| tRNA pseudouridine synthase A [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 266
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 136/300 (45%), Gaps = 56/300 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG--QPVSISLSSRTDAGVHAA 114
++R + + Y G+ F G Q Q +C+++ +LE A KFI + V + RTD GVHA
Sbjct: 1 MKRIALGLSYNGSFFYGWQSQPHCQSIQDILEIAISKFISVDEKVKTICAGRTDRGVHAI 60
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
S + H D +I + V R VN FL DI + + V +DFHARF A
Sbjct: 61 SQIVHFDT-KIERSMTSWV----------RGVNAFLPK--DISIHWAKSVTTDFHARFSA 107
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y + G S++ W ELD+ M ++ L+G HDFSSFRAS CQ+N
Sbjct: 108 TSRKYTYVLYCGSVRPSIYHDLVGW-CMYELDIDKMIDSSNYLIGLHDFSSFRASRCQSN 166
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+ +R + + + NG +F I
Sbjct: 167 TSVREIYSFDIKK-----------------------------NGSFIIFTI--------- 188
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFLYH VR IVGVL +G ++ ++ +L+ K + A+P GL L VKY
Sbjct: 189 --EANSFLYHMVRNIVGVLIEIGRSIKSIEWMKELLEIKNRSFAAPTFSPHGLYLFSVKY 246
>gi|356960566|ref|ZP_09063548.1| tRNA pseudouridine synthase A [gamma proteobacterium SCGC
AAA001-B15]
Length = 247
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 133/293 (45%), Gaps = 57/293 (19%)
Query: 62 IAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+ VEY+GT F G Q Q N RTV GV+E A K V + S RTDAGVHA V H
Sbjct: 5 LGVEYLGTDFHGWQIQGNGLRTVQGVVELALSKVADHSVRVFCSGRTDAGVHAKEQVIHF 64
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ + I DSS N L S D+ T V+ V DFHARF A R Y
Sbjct: 65 ETDSIR-----------DSSAWLFGGNVNLPS--DVNFTWVKEVSDDFHARFDAYARLYE 111
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y+I + P S+ W LD++ M++A L+G HDFS+FRA+ CQA SPI+TL
Sbjct: 112 YKIHNHPIRSSLKANYNLWE-PRALDIKKMRKAADFLLGEHDFSAFRANLCQAKSPIKTL 170
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
+ + + I D +L I +A +
Sbjct: 171 ESIEI-----------IKTDDTILIKI-----------------------------KANA 190
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FL H VR IVG L +G E V + +L++K A P A GL FVK
Sbjct: 191 FLRHMVRNIVGTLLKIGRDEREVDWMLSVLESKDRKQAGPTAEPQGLY--FVK 241
>gi|257454808|ref|ZP_05620059.1| tRNA pseudouridine synthase A [Enhydrobacter aerosaccus SK60]
gi|257447741|gb|EEV22733.1| tRNA pseudouridine synthase A [Enhydrobacter aerosaccus SK60]
Length = 268
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 140/291 (48%), Gaps = 54/291 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ Y I++E+IGTR+ G Q+Q ++ +E A K +P+ + + RTDAGVHA++
Sbjct: 3 VNTYAISIEFIGTRYRGWQRQQEVDSIQQHVEAALSKIANEPIEVIAAGRTDAGVHASNM 62
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H + R+P L RA N L DI V ++ +P++FHARF A
Sbjct: 63 IAHFQTS--ATRQPYNWL---------RAANSLL--PDDIAVRWIQVMPAEFHARFSAIA 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y L+ P ++ + H L+++ MQ+A L G HDF+SFRA+ CQ+N P
Sbjct: 110 RRYRYITLNHPFRPAILNQQIT-HEYAPLNVQLMQQAATYLEGTHDFTSFRAASCQSNQP 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+R HV F+ + Q +L V I
Sbjct: 169 VR-----HVH-------FAKLIQHGELL-----------------VLDI----------- 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+A FL+H VR I+G L +G GE V+ +E +L +K + A+ A A GL
Sbjct: 189 QADGFLHHMVRNIMGTLFEIGRGEKPVAWIEALLLSKNRSLAAATASADGL 239
>gi|417927738|ref|ZP_12571126.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340765612|gb|EGR88138.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
Length = 249
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 137/302 (45%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q+Q + RTV +E+ K GQPV I + RTDAGVHA
Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASGQPVPIHGAGRTDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ + KR D +R A++ Q+ DI V D+ V DFH R++
Sbjct: 61 QVIHFDLPQ--KR---------DLEKLRFALD--TQTPADIDVVDLAIVADDFHCRYQKH 107
Query: 176 ERTYFYRILSG--PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+TY + + +G P+ + A H LD+ MQEA K LVG HDF+ F A+G
Sbjct: 108 SKTYEFLVDNGRSKNPMM---RHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSV 164
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+ +RT+ E +++ QD G VF
Sbjct: 165 ENKVRTITE------------ATLVQDDKT---------------GFLVFTF-------- 189
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY QVR +VG L +G G + V ++ IL +K A P GL L ++
Sbjct: 190 ---SGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGNGLYLKEIR 246
Query: 354 YD 355
Y+
Sbjct: 247 YE 248
>gi|316932092|ref|YP_004107074.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris DX-1]
gi|315599806|gb|ADU42341.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris DX-1]
Length = 245
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 136/298 (45%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE A G+ V + + RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPKLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HV++ + P + +R A+N L+ + V VP F ARF A
Sbjct: 61 VAHVEIAK-----------PFRADKLRDALNAHLRPN-PVAVLAAEIVPETFEARFSAVR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + L+ + + W V + LD AM A +VL+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRIANRRSNLA-LDIGKVWRVPKPLDSDAMHRAAQVLIGKHDFTTFRDTECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD VL I N + +++
Sbjct: 168 EKTLD---------------------VLDVIRNGDAV-------------------DIVT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARS+L+ QVR +VG L VG G T D+ L A+ +A P+AP GL L V Y
Sbjct: 188 NARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARKRSACGPVAPPEGLYLVQVDY 245
>gi|424763809|ref|ZP_18191274.1| tRNA pseudouridine synthase A [Enterococcus faecium TX1337RF]
gi|402421985|gb|EJV54228.1| tRNA pseudouridine synthase A [Enterococcus faecium TX1337RF]
Length = 248
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 131/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V +FHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEIVSEEFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E + LF+
Sbjct: 169 RTIYEAKMEVNETKNELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|319942390|ref|ZP_08016704.1| pseudouridylate synthase [Sutterella wadsworthensis 3_1_45B]
gi|319804078|gb|EFW00986.1| pseudouridylate synthase [Sutterella wadsworthensis 3_1_45B]
Length = 269
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 131/293 (44%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT F+G Q Q + +V LE A +F P+S+ + RTD GVHA V V
Sbjct: 13 LGIEYRGTAFNGWQVQPDHPSVQAALEAALSQFADHPISVICAGRTDTGVHATHQV--VS 70
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+++R S+ R VN L + V +R V FHARF A+ RTY Y
Sbjct: 71 FTSVARRP---------SAGWIRGVNAILPE--SVAVRWMREVDEKFHARFSARSRTYEY 119
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P +FE W V LD MQ L+G HDF+SFRAS CQA +P+RT+
Sbjct: 120 WIWNDPVRSPLFEGSAGW-VFRPLDEALMQRGATALIGEHDFTSFRASECQAKTPVRTIS 178
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
EL + V AL G+R A +F
Sbjct: 179 ELKI--VRRGAL-----------------------------VGVRIT---------ANAF 198
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
L H VR IVG L VGTG + +L AK+ AA+P GL L V Y
Sbjct: 199 LQHMVRNIVGALIYVGTGRERPEWIAEVLAAKSRDAAAPTFSPAGLYLTGVGY 251
>gi|419796834|ref|ZP_14322352.1| tRNA pseudouridine(38-40) synthase [Neisseria sicca VK64]
gi|385699079|gb|EIG29398.1| tRNA pseudouridine(38-40) synthase [Neisseria sicca VK64]
Length = 284
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 146/311 (46%), Gaps = 58/311 (18%)
Query: 46 TVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLS 104
+ TE +ST K IQR+ + + Y G+RF G QKQ + TV VLE A + G+ + ++
Sbjct: 15 SYTESLST-KTIQRWALTLSYDGSRFYGWQKQADGLPTVQTVLESALSQIAGETIRTIVA 73
Query: 105 SRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCV 164
RTD GVHA + V H D + V P + V R VN +L EG + V + V
Sbjct: 74 GRTDTGVHATAQVIHFDTK---------VARPEQAWV--RGVNAYL-PEG-VAVLFAQQV 120
Query: 165 PSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAW-HVTEELDLRAMQEACKVLVGCHDF 223
FHARF A R Y Y + S P + + W H+ +LD MQ+A +L G HDF
Sbjct: 121 APHFHARFDAYGRRYRYLLESSPVRSPILQGKIGWTHL--KLDPEKMQQAALLLEGEHDF 178
Query: 224 SSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVF 283
SSFRA+ CQA SP++T L+S+ +P +D
Sbjct: 179 SSFRAAECQAKSPVKT-------------LYSAKISGTPQFLKLD--------------- 210
Query: 284 GIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAP 343
+FL+H VR I+G L VG+G L+VS + +++ ++ A P
Sbjct: 211 ------------LHGNAFLHHMVRNIMGALVYVGSGRLSVSGFQELIEERSRLKAPPTFM 258
Query: 344 ACGLSLGFVKY 354
GL L V Y
Sbjct: 259 PDGLYLTRVDY 269
>gi|308270748|emb|CBX27358.1| tRNA pseudouridine synthase A [uncultured Desulfobacterium sp.]
Length = 246
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 144/302 (47%), Gaps = 61/302 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA--- 113
I+ + + +EY GT F+G Q+QLN RT+ G +E+A Q ++++ + RTDAGVHA
Sbjct: 2 IKNFKLTIEYDGTAFNGWQRQLNGRTIQGEIEKAIFAMTKQKIALTGAGRTDAGVHALAQ 61
Query: 114 -ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
A+ +C ++E DS R +N L GDI++ V FH+R+
Sbjct: 62 VANFICDTNLE-------------PDS--FYRGLNSLL--PGDIIIKLCEQVCEKFHSRY 104
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
++ + Y Y+IL+ P P S ++ W + LDL+AM+EA + G DF +F SG
Sbjct: 105 DSKSKLYRYKILNRPLP-SAIGRNYLWFIKSPLDLKAMREAVLFIAGTRDFKAFEGSGSP 163
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
S IRT+ SE++ N+D+ + I+
Sbjct: 164 RKSTIRTVLR---SELIE-------NEDNIIQFEIE------------------------ 189
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
A FL VR IVG L +VG G+L D++ IL +K AS AP GL L V
Sbjct: 190 -----ADGFLRFMVRNIVGSLISVGLGKLKPLDIKTILDSKDRRKASATAPPGGLFLVKV 244
Query: 353 KY 354
+Y
Sbjct: 245 RY 246
>gi|158520483|ref|YP_001528353.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3]
gi|158509309|gb|ABW66276.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3]
Length = 252
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 140/302 (46%), Gaps = 53/302 (17%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
+ + + +EY G F G Q Q + RTV G + A GQ VS+ S RTDAGVHA + V
Sbjct: 3 KNFRLIIEYDGACFHGWQIQKDLRTVQGEITGALASITGQAVSVIGSGRTDAGVHAMAQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
+ ++ +PG +++A+N L DI++ D R V +FHAR+ A+ +
Sbjct: 63 ASFICD--TRLEPG---------TLQKALNGILAK--DIVIHDCREVSLNFHARYSAKSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY YRIL+ P +++ + AWH+ + LDL AM A ++G HDFSSF +G S +
Sbjct: 110 TYRYRILNRNLPAALY-RGYAWHIKKPLDLGAMTAALPHILGRHDFSSFEGTGSPKASSV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
R HV+ ++ M G F I
Sbjct: 169 R-----HVT-----------------------AATFNMAEDGYLAFEI-----------T 189
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A FL H VR IVG L VG G+ T V IL AK + A AP GL L V Y+
Sbjct: 190 ADGFLKHMVRNIVGTLVEVGLGKKTPEAVADILAAKDRSRAGATAPGHGLFLVRVNYEPS 249
Query: 358 ED 359
D
Sbjct: 250 PD 251
>gi|408401009|ref|YP_006858972.1| phosphomethyl pyrimidine kinase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407967237|dbj|BAM60475.1| phosphomethyl pyrimidine kinase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 249
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 136/300 (45%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q+Q + RTV +E+ K QPV I + RTDAGVHA
Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASVQPVPIHGAGRTDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ + KR D +R A++ Q+ DI V D+ V DFH R++
Sbjct: 61 QVIHFDLPQ--KR---------DLEKLRFALD--TQTPDDIDVVDLAIVADDFHCRYQKH 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY + + +G P + + A H LD+ MQEA K LVG HDF+ F A+G +
Sbjct: 108 SKTYEFLVDNG-RPKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSVEN 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E +++ QD G VF
Sbjct: 167 KVRTITE------------ATLVQDDKT---------------GFLVFTF---------- 189
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + V ++ IL +K A P GL L ++Y+
Sbjct: 190 -SGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGNGLYLKEIRYE 248
>gi|15598310|ref|NP_251804.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAO1]
gi|107102663|ref|ZP_01366581.1| hypothetical protein PaerPA_01003728 [Pseudomonas aeruginosa PACS2]
gi|218890685|ref|YP_002439549.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa LESB58]
gi|254236084|ref|ZP_04929407.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa C3719]
gi|254241809|ref|ZP_04935131.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 2192]
gi|296388384|ref|ZP_06877859.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAb1]
gi|313108437|ref|ZP_07794441.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 39016]
gi|386057915|ref|YP_005974437.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa M18]
gi|386067149|ref|YP_005982453.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa NCGM2.S1]
gi|392983161|ref|YP_006481748.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa DK2]
gi|416860906|ref|ZP_11914441.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 138244]
gi|416885612|ref|ZP_11922526.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 152504]
gi|418588632|ref|ZP_13152636.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa MPAO1/P1]
gi|418593267|ref|ZP_13157117.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa MPAO1/P2]
gi|419752559|ref|ZP_14278966.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PADK2_CF510]
gi|421152962|ref|ZP_15612530.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa ATCC 14886]
gi|421159509|ref|ZP_15618639.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa ATCC 25324]
gi|421517644|ref|ZP_15964318.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAO579]
gi|451987872|ref|ZP_21936023.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 18A]
gi|8134770|sp|O87016.1|TRUA_PSEAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|9949225|gb|AAG06502.1|AE004735_9 tRNA-pseudouridine synthase I [Pseudomonas aeruginosa PAO1]
gi|3237313|gb|AAC23941.1| HisT [Pseudomonas aeruginosa PAO1]
gi|126168015|gb|EAZ53526.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa C3719]
gi|126195187|gb|EAZ59250.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 2192]
gi|218770908|emb|CAW26673.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa LESB58]
gi|310880943|gb|EFQ39537.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 39016]
gi|334833745|gb|EGM12789.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 152504]
gi|334837174|gb|EGM15947.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 138244]
gi|347304221|gb|AEO74335.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa M18]
gi|348035708|dbj|BAK91068.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa NCGM2.S1]
gi|375040503|gb|EHS33262.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa MPAO1/P1]
gi|375047873|gb|EHS40410.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa MPAO1/P2]
gi|384401099|gb|EIE47455.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PADK2_CF510]
gi|392318666|gb|AFM64046.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa DK2]
gi|404347126|gb|EJZ73475.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAO579]
gi|404524640|gb|EKA34967.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa ATCC 14886]
gi|404546975|gb|EKA55998.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa ATCC 25324]
gi|451754419|emb|CCQ88546.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 18A]
gi|453043118|gb|EME90852.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA21_ST175]
Length = 285
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 140/309 (45%), Gaps = 63/309 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ R + +EY G+R+ G Q+Q +V LE A K +PV + + RTDA VHA+
Sbjct: 17 VSRIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASG 76
Query: 116 NVCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D VER P + V+ N DI VT R +P+ FHARF
Sbjct: 77 QVVHFDTAVER-----------PLKAWVMGTNAN----LPADISVTWARVMPAHFHARFS 121
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M+EA +VLVG HDF+SFRA CQA
Sbjct: 122 AMARRYRYAIYNDPIRPAHLAEEVTWN-HRPLDIGRMREAAQVLVGTHDFTSFRAVQCQA 180
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ + + E +G V I
Sbjct: 181 KSPVKTMHHVRLLE-----------------------------HGRLIVLDI-------- 203
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R +FL+H VR I GVL +G GE + + +L+A+ A A GL L V+
Sbjct: 204 ---RGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYLVRVE 260
Query: 354 Y----DLPE 358
Y +LPE
Sbjct: 261 YPGEFELPE 269
>gi|399013571|ref|ZP_10715875.1| pseudouridylate synthase I [Pseudomonas sp. GM16]
gi|398113346|gb|EJM03194.1| pseudouridylate synthase I [Pseudomonas sp. GM16]
Length = 284
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 139/312 (44%), Gaps = 73/312 (23%)
Query: 59 RYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+SG Q+QL TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RVALGVEYKGSRYSGWQRQLTGVATVQEELEKALSKVANSPVSLQCAGRTDAGVHACGQV 77
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D D S+ + + DI V+ R +P+ FHARF+A R
Sbjct: 78 VHFDTTV-------------DRSLKAWVMGANINLPHDISVSWARVMPAHFHARFKAIAR 124
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSFRASG 230
Y Y I + ++ R H+ EE LD+ M EA + L+G HDFS+FRA
Sbjct: 125 RYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLIGTHDFSAFRAGQ 176
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA SPI+ + L V+ +G V I
Sbjct: 177 CQAKSPIKKMHHLRVTR-----------------------------HGKMIVLDI----- 202
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
RA +FL+H VR I GVL +G GE V ++ +L+++ + A GL L
Sbjct: 203 ------RANAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRERRSGGVTAHPYGLYLV 256
Query: 351 FVKYD----LPE 358
V+Y LPE
Sbjct: 257 QVEYHDEFPLPE 268
>gi|226940175|ref|YP_002795248.1| tRNA pseudouridine synthase A [Laribacter hongkongensis HLHK9]
gi|226715101|gb|ACO74239.1| TruA [Laribacter hongkongensis HLHK9]
Length = 283
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 136/298 (45%), Gaps = 58/298 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY G F+G Q+Q + TV G LE A + G PVS+ + RTDAGVHA+ V
Sbjct: 27 RIALGLEYDGRGFAGWQRQPDQDTVQGALEGALSQIAGHPVSVLAAGRTDAGVHASQQVV 86
Query: 119 HVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D VER P + V R VN FL + V V+ V DFHARF A
Sbjct: 87 HFDTGVER-----------PLTAWV--RGVNRFLPP--GVAVLWVQPVADDFHARFSACS 131
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y Y +++ P ++ W LD+ AMQ A +L+G HDFSSFRA+ CQA +P
Sbjct: 132 RSYSYYLMNHPVRPALGAGRVGW-FHAPLDVPAMQAAAGLLLGQHDFSSFRAAECQAKTP 190
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL +SE D + +
Sbjct: 191 VKTLARFDISE-----------HDGLIRFDL----------------------------- 210
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+A +FL+H VR +VG L VG G + +L A+ T A P GL L V Y
Sbjct: 211 QADAFLHHMVRNLVGALVYVGKGAHAPEWMAGLLAARDRTQAPPTFMPDGLYLTAVGY 268
>gi|304438671|ref|ZP_07398609.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368320|gb|EFM22007.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 275
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 142/324 (43%), Gaps = 63/324 (19%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
R + + V Y GT + G Q+Q R V VLE A + G+ V ++ + RTDAGVHA
Sbjct: 5 RARNIALKVAYDGTNYHGFQRQTPPIRAVQNVLEAALAQVCGETVELASAGRTDAGVHAY 64
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V + + R P E LP RAVN L DI+V++ DF AR A
Sbjct: 65 GQVVNFFTD---GRIPTERLP--------RAVNGLLPP--DIVVSEAWEAARDFSARHSA 111
Query: 175 QERTYFYRI--LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+ Y YR+ P+P F + AW + + LD AM+ A +L G HD+SSFRA+G
Sbjct: 112 TGKAYVYRMKECRVPDP---FTRSYAWQIFQPLDYDAMRAALHLLEGTHDYSSFRAAGGA 168
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
SP+RTLD + ++ + +L + G+
Sbjct: 169 PMSPVRTLDTIRLTA--------------------EGEGRLSLYIHGTG----------- 197
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
FLYH VR IV AVGTG ++ I A+ A P APA GL L V
Sbjct: 198 --------FLYHMVRNIVSTAVAVGTGRISKDRFAEIFAARDRRLAPPTAPAGGLYLLAV 249
Query: 353 KYDLPE-----DDQTDAAESLETC 371
YD D +AA S + C
Sbjct: 250 DYDGTSERSHTDGAGNAAASCDKC 273
>gi|355641049|ref|ZP_09052036.1| tRNA pseudouridine synthase A [Pseudomonas sp. 2_1_26]
gi|354831075|gb|EHF15104.1| tRNA pseudouridine synthase A [Pseudomonas sp. 2_1_26]
Length = 285
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 140/309 (45%), Gaps = 63/309 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ R + +EY G+R+ G Q+Q +V LE A K +PV + + RTDA VHA+
Sbjct: 17 VSRIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASG 76
Query: 116 NVCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D VER P + V+ N DI VT R +P+ FHARF
Sbjct: 77 QVVHFDTAVER-----------PLKAWVMGTNAN----LPADISVTWARVMPAHFHARFS 121
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M+EA +VLVG HDF+SFRA CQA
Sbjct: 122 AMARRYRYAIYNDPIRPAHLAEEITWN-HRPLDIGRMREAAQVLVGTHDFTSFRAVQCQA 180
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ + + E +G V I
Sbjct: 181 KSPVKTMHHVRLLE-----------------------------HGRLIVLDI-------- 203
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R +FL+H VR I GVL +G GE + + +L+A+ A A GL L V+
Sbjct: 204 ---RGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYLVRVE 260
Query: 354 Y----DLPE 358
Y +LPE
Sbjct: 261 YPGEFELPE 269
>gi|421166735|ref|ZP_15624967.1| tRNA pseudouridine synthase A, partial [Pseudomonas aeruginosa ATCC
700888]
gi|404537206|gb|EKA46816.1| tRNA pseudouridine synthase A, partial [Pseudomonas aeruginosa ATCC
700888]
Length = 278
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 140/309 (45%), Gaps = 63/309 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ R + +EY G+R+ G Q+Q +V LE A K +PV + + RTDA VHA+
Sbjct: 10 VSRIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASG 69
Query: 116 NVCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D VER P + V+ N DI VT R +P+ FHARF
Sbjct: 70 QVVHFDTAVER-----------PLKAWVMGTNAN----LPADISVTWARVMPAHFHARFS 114
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M+EA +VLVG HDF+SFRA CQA
Sbjct: 115 AMARRYRYAIYNDPIRPAHLAEEVTWN-HRPLDIGRMREAAQVLVGTHDFTSFRAVQCQA 173
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ + + E +G V I
Sbjct: 174 KSPVKTMHHVRLLE-----------------------------HGRLIVLDI-------- 196
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R +FL+H VR I GVL +G GE + + +L+A+ A A GL L V+
Sbjct: 197 ---RGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYLVRVE 253
Query: 354 Y----DLPE 358
Y +LPE
Sbjct: 254 YPGEFELPE 262
>gi|344345054|ref|ZP_08775911.1| tRNA pseudouridine synthase A [Marichromatium purpuratum 984]
gi|343803311|gb|EGV21220.1| tRNA pseudouridine synthase A [Marichromatium purpuratum 984]
Length = 267
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 129/305 (42%), Gaps = 66/305 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R ++ VEY G+ F G Q Q+ RTV LE A + P+ + + RTD GVHA V
Sbjct: 5 RIVMGVEYDGSDFHGWQTQVGVRTVQQCLEAAISRVADHPLGVQCAGRTDTGVHAFEQVV 64
Query: 119 HVDV-----ERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER LPP D+ V V DFHARF
Sbjct: 65 HFDTTASRSERSWVLGTNVNLPP------------------DVAVRWAHRVEGDFHARFS 106
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y+ L S ++RA V + LDL M+EA + LVG HDFSSFRA CQA
Sbjct: 107 AVARHYRYQ-LQVRRTRSPLARNRAVWVHDALDLARMREAARALVGEHDFSSFRAVACQA 165
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP+R + L V +D V+ I G+N
Sbjct: 166 KSPVRRVHYLEVDA-----------EDDLVILRI-----------GAN------------ 191
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FL+H VR I GVL A+G GE V +L + T AP GL FV+
Sbjct: 192 ------GFLHHMVRNIAGVLVAIGRGEAEVGWTRELLAVRDRTLGGVTAPPQGLF--FVR 243
Query: 354 YDLPE 358
D PE
Sbjct: 244 ADYPE 248
>gi|146307739|ref|YP_001188204.1| tRNA pseudouridine synthase A [Pseudomonas mendocina ymp]
gi|145575940|gb|ABP85472.1| tRNA pseudouridine synthase A [Pseudomonas mendocina ymp]
Length = 287
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 142/309 (45%), Gaps = 66/309 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAASN 116
R + +EY G R+ G Q+Q N ++ G LE A K G +P++I + RTDA VHA+
Sbjct: 19 RIALGLEYKGARYRGFQRQAGNVASIQGCLESALSKVAGGEPINIMCAGRTDASVHASGQ 78
Query: 117 VCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H D VER P + ++ +N DI VT R +P+ FHARF A
Sbjct: 79 VVHFDTAVER-----------PLHAWIMGANMN----LPNDISVTWARVMPAHFHARFSA 123
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I + P + ++ W+ LD+ M+EA + LVG HDFS+FRA+ CQA
Sbjct: 124 MARRYRYVIYNDPIRPAHMAEEVTWN-HRPLDVTRMREAARALVGTHDFSAFRATQCQAK 182
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SPI+T+ L V E H + V
Sbjct: 183 SPIKTVHHLQVIE-----------------------------------------HGCFIV 201
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ RA +FL+H VR I GVL A+G GE V +L+ + A GL L V+
Sbjct: 202 LDIRANAFLHHMVRNIAGVLMAIGAGERPVEWAREVLERADRRSGGVTAHPYGLYLVQVE 261
Query: 354 Y----DLPE 358
Y +LP+
Sbjct: 262 YPQEFELPQ 270
>gi|433461721|ref|ZP_20419324.1| tRNA pseudouridine synthase A [Halobacillus sp. BAB-2008]
gi|432189736|gb|ELK46813.1| tRNA pseudouridine synthase A [Halobacillus sp. BAB-2008]
Length = 247
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 141/299 (47%), Gaps = 54/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAAS 115
+QR ++Y GT ++G Q Q N T+ LE+A K G+ V ++ S RTDAGVHA
Sbjct: 1 MQRMKFTLQYDGTAYAGYQVQPNGNTIQAELEKALAKIHKGETVKVTASGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D P + P ++ +RAVN L DIM+T VP DFHAR+
Sbjct: 61 QVIHFDT-------PLSI--PDENW--KRAVNSLLPD--DIMITHSEAVPEDFHARYGTV 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y Y + + + +F++ +HV ELD+ AM+EAC++L G HDF+SF C +
Sbjct: 108 GKEYRYYVWNDRDR-QLFKRHHTYHVKAELDMAAMKEACRLLEGEHDFTSF----CSPKT 162
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
I+ + V T +SI ++ G VF +
Sbjct: 163 DIK-------GDKVRTIYEASIRKE-----------------GAEIVF-----------L 187
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
R FLY+ VR++VG L VG E + + RIL A AA AP GL L V Y
Sbjct: 188 FRGSGFLYNMVRILVGTLLEVGRHEREPASIPRILAAMDRAAAGKTAPPQGLFLWEVFY 246
>gi|427410647|ref|ZP_18900849.1| tRNA pseudouridine synthase A [Sphingobium yanoikuyae ATCC 51230]
gi|425710977|gb|EKU73994.1| tRNA pseudouridine synthase A [Sphingobium yanoikuyae ATCC 51230]
Length = 252
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 138/299 (46%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ VE+ G F G Q+Q + +V +E+A H G+ + + RTDAGVH +
Sbjct: 1 MTRFAFTVEFDGRPFMGWQRQAHGPSVQQAIEDAIHAVTGERAILHAAGRTDAGVHGLAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H DVE+ P + A+N L+ + + V D+HARF
Sbjct: 61 RAHADVEK-----------PLTPFRLMEAINAKLRPH-PVAILACEEVAPDWHARFSCTG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + PL++ E AW V + LD AM +A ++LVG HDF++FR+ CQA SP
Sbjct: 109 RAYIYRIANRRAPLTL-ESGLAWRVIQPLDADAMHDAAQILVGHHDFTTFRSVHCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+++L L+VS R+ R + A
Sbjct: 168 LKSLAMLNVS---------------------------------------REGDR-IAIRA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG L VG G + D+ L+A+ + AP GL FV+ D
Sbjct: 188 EARSFLHHQVRSMVGCLAMVGMGRWSAEDLRDALEARDRARLALNAPPDGLY--FVRAD 244
>gi|296446982|ref|ZP_06888917.1| tRNA pseudouridine synthase A [Methylosinus trichosporium OB3b]
gi|296255549|gb|EFH02641.1| tRNA pseudouridine synthase A [Methylosinus trichosporium OB3b]
Length = 246
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 141/297 (47%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
R+ + +EY G F G Q+Q N ++ LEEA G + + RTDAGVHA V
Sbjct: 3 RFALIIEYDGGPFVGWQRQENGVSIQQRLEEAVAALESGARRVVHGAGRTDAGVHALGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ R + + +R A+N L+ + I V + R V F ARF A R
Sbjct: 63 AHVDLTRDWR-----------ADRLRDAINAHLRPD-PIAVLEARGVAEGFEARFSAVRR 110
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y I + PL++ ++ R WHV LD AM A ++LVG HDF++FR++ CQA SPI
Sbjct: 111 HYRYIIDNRRAPLTL-QRGRMWHVKRPLDAAAMHAAAQLLVGRHDFTTFRSTECQAESPI 169
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V R++ E+
Sbjct: 170 RTLERLDV----------------------------------------RREGSLIEITTS 189
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL++QVR + G L+ VG+G + +D+ L+A+ +AP GL L V Y
Sbjct: 190 ARSFLHNQVRSLAGSLEHVGSGRWSAADLRAALEARERARCGQVAPPHGLYLVAVDY 246
>gi|430834845|ref|ZP_19452847.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0679]
gi|430484914|gb|ELA61861.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0679]
Length = 248
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V DFHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTL--DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ ++ V+E LF+
Sbjct: 169 RTIYKAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|430375560|ref|ZP_19429963.1| tRNA pseudouridine synthase A [Moraxella macacae 0408225]
gi|429540791|gb|ELA08819.1| tRNA pseudouridine synthase A [Moraxella macacae 0408225]
Length = 268
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 136/289 (47%), Gaps = 55/289 (19%)
Query: 60 YLIAVEYIGTRFSGSQKQLNCRTVVG-VLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
Y I +E+IGT + G Q+Q + T + LE AF K +P+ I S RTDAGVHA++ +
Sbjct: 5 YAINLEFIGTHYRGWQRQQHDHTTIQQTLETAFSKVANEPIEIIASGRTDAGVHASNMIA 64
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H + R P L R VN L + DI + V + +FHARF A R
Sbjct: 65 HFCTN--ANRDPYNWL---------RGVNALLPN--DIALRAVTPMSDEFHARFLAIARR 111
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y L+ ++ HV L+L MQ+AC+ LVG H+F+SFRAS CQ+ PIR
Sbjct: 112 YRYVTLNQTFRPAILHGQVT-HVHTPLNLEKMQQACQFLVGMHNFTSFRASQCQSKQPIR 170
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
+H + +++ F ++ +A
Sbjct: 171 ---HVHFANLIAHGDFIVLD-------------------------------------IQA 190
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
FL+H VR I+G L ++G GE T + ++ A+ T A+P APA GL
Sbjct: 191 DGFLHHMVRNIMGSLFSIGRGEHTPDWINDLILAEDRTLAAPTAPADGL 239
>gi|408419861|ref|YP_006761275.1| tRNA pseudouridine synthase A TruA2 [Desulfobacula toluolica Tol2]
gi|405107074|emb|CCK80571.1| TruA2: tRNA pseudouridine synthase A [Desulfobacula toluolica Tol2]
Length = 247
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 141/297 (47%), Gaps = 53/297 (17%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
+ + I VEY GT F G Q+Q + +T+ G LE+A + Q V IS S RTDAGVHA V
Sbjct: 3 KNFKIIVEYDGTDFFGWQRQNDKKTIQGELEKALSMILNQDVRISGSGRTDAGVHAFGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
+ V +LP + +++ VN ++ I++ + + V +DFH R++A +
Sbjct: 63 ANFHVNT-------GILPQN----IKKGVNSVIKQP--IVIRECQIVDNDFHGRYKAVSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y IL+ +P ++ + WH+ LD+ AM + C + G DF SF +G +S I
Sbjct: 110 EYHYFILNREDPCAI-GRSYQWHIRHPLDIEAMNQCCNEITGVFDFKSFENTGSPRSSTI 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
R + FS I S +DN ++L GS
Sbjct: 169 REI------------FFSHI-------SVLDN-NRLVFKICGS----------------- 191
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL + VR ++G + G ++TV+ +IL+ K T A P APA GL L V Y
Sbjct: 192 --GFLKYMVRNLIGTIVLAGLNKITVTQFRKILETKDRTKAGPTAPAHGLFLKKVNY 246
>gi|398990843|ref|ZP_10694007.1| pseudouridylate synthase I, partial [Pseudomonas sp. GM24]
gi|398142262|gb|EJM31163.1| pseudouridylate synthase I, partial [Pseudomonas sp. GM24]
Length = 328
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 139/312 (44%), Gaps = 73/312 (23%)
Query: 59 RYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+SG Q+QL TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 62 RVALGVEYKGSRYSGWQRQLTGVATVQEELEKALSKVANSPVSLQCAGRTDAGVHACGQV 121
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D D S+ + + DI V+ R +P+ FHARF+A R
Sbjct: 122 VHFDTTV-------------DRSLKAWVMGANINLPHDISVSWARVMPAHFHARFKAIAR 168
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSFRASG 230
Y Y I + ++ R H+ EE LD+ M EA + L+G HDFS+FRA
Sbjct: 169 RYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLIGTHDFSAFRAGQ 220
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA SPI+ + L V+ +G V I
Sbjct: 221 CQAKSPIKKMHHLRVTR-----------------------------HGKMIVLDI----- 246
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
RA +FL+H VR I GVL +G GE V ++ +L+++ + A GL L
Sbjct: 247 ------RANAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRERRSGGVTAHPYGLYLV 300
Query: 351 FVKYD----LPE 358
V+Y LPE
Sbjct: 301 QVEYHDEFPLPE 312
>gi|154483152|ref|ZP_02025600.1| hypothetical protein EUBVEN_00853 [Eubacterium ventriosum ATCC
27560]
gi|149735960|gb|EDM51846.1| tRNA pseudouridine synthase A [Eubacterium ventriosum ATCC 27560]
Length = 246
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 58/300 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R + + Y GT + G Q Q+N TV VL +A + + +++ +SRTD+GVHA N
Sbjct: 1 MKRVRLIIAYDGTNYCGWQVQINGITVEEVLNKALKDLLNEEIAVIGASRTDSGVHAMGN 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D E R P E + A+N L + DI + VP D+H R+R
Sbjct: 61 VAVFDTE---TRIPAE--------KISFALNQRLPN--DIRIQKSDEVPLDWHPRYRDST 107
Query: 177 RTYFYRILS--GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+TY Y+IL+ P+PL F + LD + M+EA + +VG HDF+SF ++G Q +
Sbjct: 108 KTYEYKILNRRFPDPLQRFYTHFMYM---PLDEQKMKEAAEYIVGEHDFASFCSAGSQVD 164
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
S +RT+ L S+N+ V+S IR
Sbjct: 165 STVRTVYSL------------SVNKRDDVIS-------------------IR-------- 185
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+IVG L VG G V+ I++AK A P APACGL+L ++Y
Sbjct: 186 -ITGNGFLYNMVRIIVGTLIKVGLGVYPPEHVKEIIEAKDRYVAGPKAPACGLTLVGIEY 244
>gi|339483857|ref|YP_004695643.1| tRNA pseudouridine synthase A [Nitrosomonas sp. Is79A3]
gi|338806002|gb|AEJ02244.1| tRNA pseudouridine synthase A [Nitrosomonas sp. Is79A3]
Length = 265
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 134/298 (44%), Gaps = 56/298 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R ++ +EY G+R+ G Q Q ++ LE A K + + + + RTDAGVHA V
Sbjct: 2 RIVLVLEYDGSRYCGWQSQPEGCSIQDALETALSKIAKEAIRVITAGRTDAGVHALYQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D L S R VN L GDI + V +FH+R+ A ER
Sbjct: 62 HFDT-----------LAQRPISAWIRGVNALL--PGDIAILWATEVSDEFHSRYSAVERR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +L+ P V K W+ + L L MQ A +L+G HDFSSFR++ CQA SPIR
Sbjct: 109 YIYLLLNQPVRPGVHGKKVGWY-HQPLALEKMQAAGNILIGEHDFSSFRSAECQARSPIR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+ +L++S + +F RA
Sbjct: 168 TITQLNISRQGNLLIFD----------------------------------------LRA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDV-ERILKAKTVTAASPMAPACGLSLGFVKYD 355
+FL H VR I+G L +G G+ + + E ++ + AA +PA GL L VKYD
Sbjct: 188 NAFLQHMVRNIIGCLVYIGKGKYSAEWMCELLVSCNRIYAAPTFSPA-GLYLAGVKYD 244
>gi|421451529|ref|ZP_15900890.1| tRNA pseudouridine synthase A [Streptococcus salivarius K12]
gi|400181960|gb|EJO16222.1| tRNA pseudouridine synthase A [Streptococcus salivarius K12]
Length = 248
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 131/298 (43%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q N R++ LE+ + G PV++ + RTDAGVHA V
Sbjct: 3 RYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ P + + + Q DI V + V +FHAR+ +
Sbjct: 63 IHFDL-------------PQERDLEKLRFGLDTQCPDDIDVVSIELVSEEFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQASVS--------------------------------------IDEKTGFYIFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+ FLY QVR +VG L +G G + VS V+ +L+++ A P A GL L ++Y+
Sbjct: 191 SNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTAAGNGLYLKEIRYE 248
>gi|425054937|ref|ZP_18458438.1| tRNA pseudouridine synthase A [Enterococcus faecium 505]
gi|403035071|gb|EJY46479.1| tRNA pseudouridine synthase A [Enterococcus faecium 505]
Length = 248
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V +FHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEIVSEEFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYYPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|451982071|ref|ZP_21930405.1| tRNA pseudouridine synthase A [Nitrospina gracilis 3/211]
gi|451760736|emb|CCQ91683.1| tRNA pseudouridine synthase A [Nitrospina gracilis 3/211]
Length = 258
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 141/302 (46%), Gaps = 54/302 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R + +EY G+++ G Q Q N T+ VLE+ G+ + S RTD+GVHA
Sbjct: 1 MRRIKLLLEYEGSQYHGWQYQPNGITIQEVLEKRLETITGKKTPVVGSGRTDSGVHAEGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H + S P + L +A+N L DI+V V V SDFHAR A+
Sbjct: 61 VAHFNTA--SNMTPRQFL---------KALNSLLPH--DIVVRAVEEVDSDFHARKSAKR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+ Y Y +L+ P S +A +V + L + AM++A + LVG H+F SF+ +GC+A S
Sbjct: 108 KIYRYTLLNRDYP-SALRCRQAHYVAQPLKVTAMRKAARHLVGKHNFKSFQGAGCEAKSA 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+R + +L + + F S+D S
Sbjct: 167 VREIHDLSIKKRGDWIEF-----------SVDGS-------------------------- 189
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
FL H VR +VG L VG G + D++ ILKA+ A P APA GL L V YD
Sbjct: 190 ---GFLKHMVRNLVGTLIEVGYGRIEPDDIKAILKARDRKKAGPTAPARGLCLVEVFYDK 246
Query: 357 PE 358
P+
Sbjct: 247 PK 248
>gi|227550751|ref|ZP_03980800.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330]
gi|257887991|ref|ZP_05667644.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|257893205|ref|ZP_05672858.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|257896390|ref|ZP_05676043.1| tRNA pseudouridine synthase [Enterococcus faecium Com12]
gi|293379476|ref|ZP_06625620.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1]
gi|293570714|ref|ZP_06681764.1| tRNA pseudouridine synthase A [Enterococcus faecium E980]
gi|431036445|ref|ZP_19492215.1| tRNA pseudouridine synthase A [Enterococcus faecium E1590]
gi|431739039|ref|ZP_19527979.1| tRNA pseudouridine synthase A [Enterococcus faecium E1972]
gi|431740680|ref|ZP_19529591.1| tRNA pseudouridine synthase A [Enterococcus faecium E2039]
gi|431753086|ref|ZP_19541763.1| tRNA pseudouridine synthase A [Enterococcus faecium E2620]
gi|431757912|ref|ZP_19546541.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E3083]
gi|431763178|ref|ZP_19551731.1| tRNA pseudouridine synthase A [Enterococcus faecium E3548]
gi|227180069|gb|EEI61041.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330]
gi|257824045|gb|EEV50977.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|257829584|gb|EEV56191.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|257832955|gb|EEV59376.1| tRNA pseudouridine synthase [Enterococcus faecium Com12]
gi|291609186|gb|EFF38458.1| tRNA pseudouridine synthase A [Enterococcus faecium E980]
gi|292641999|gb|EFF60165.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1]
gi|430562985|gb|ELB02216.1| tRNA pseudouridine synthase A [Enterococcus faecium E1590]
gi|430596582|gb|ELB34406.1| tRNA pseudouridine synthase A [Enterococcus faecium E1972]
gi|430602763|gb|ELB40313.1| tRNA pseudouridine synthase A [Enterococcus faecium E2039]
gi|430612591|gb|ELB49626.1| tRNA pseudouridine synthase A [Enterococcus faecium E2620]
gi|430618417|gb|ELB55264.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E3083]
gi|430622872|gb|ELB59582.1| tRNA pseudouridine synthase A [Enterococcus faecium E3548]
Length = 248
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V +FHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEIVSEEFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|383757107|ref|YP_005436092.1| tRNA pseudouridine synthase A TruA [Rubrivivax gelatinosus IL144]
gi|381377776|dbj|BAL94593.1| tRNA pseudouridine synthase A TruA [Rubrivivax gelatinosus IL144]
Length = 274
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 132/299 (44%), Gaps = 58/299 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + V Y G R+ G Q Q + RTV VLE A +F PVS + RTDAGVHA + V
Sbjct: 16 RIALGVAYRGARYHGWQSQPDGRTVQDVLERALGQFAATPVSTLCAGRTDAGVHAFNQVV 75
Query: 119 HVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D V+R D R N +L D+ V R V + FHAR A
Sbjct: 76 HFDAPVDR-------------DEFSWVRGTNRYLPD--DVAVQWCRLVDARFHARNSAHG 120
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y + IL P ++ W V LD AM+ A L+G HDFSSFRA+GCQA +P
Sbjct: 121 RRYRFVILEAPVRPAIEAGACGW-VFRPLDGDAMRAAATHLIGEHDFSSFRAAGCQALTP 179
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++T+ + G+ ++ + +
Sbjct: 180 VKTMRSI----------------------------------------GVERRGAYWRIEF 199
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A +FL+H VR IVG L AVG+G + +L A++ AA+P P GL YD
Sbjct: 200 DASAFLHHMVRNIVGCLVAVGSGRQRPEWMAEVLAARSRDAAAPTFPPDGLYFVGPYYD 258
>gi|424942487|ref|ZP_18358250.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa NCMG1179]
gi|346058933|dbj|GAA18816.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa NCMG1179]
Length = 285
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 140/309 (45%), Gaps = 63/309 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ R + +EY G+R+ G Q+Q +V LE A K +PV + + RTDA VHA+
Sbjct: 17 VSRIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASG 76
Query: 116 NVCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D VER P + V+ N DI VT R +P+ FHARF
Sbjct: 77 QVVHFDTAVER-----------PLKAWVMGTNAN----LPADISVTWARGMPAHFHARFS 121
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M+EA +VLVG HDF+SFRA CQA
Sbjct: 122 AMARRYRYAIYNDPIRPAHLAEEVTWN-HRPLDIGRMREAAQVLVGTHDFTSFRAVQCQA 180
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ + + E +G V I
Sbjct: 181 KSPVKTMHHVRLLE-----------------------------HGRLIVLDI-------- 203
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R +FL+H VR I GVL +G GE + + +L+A+ A A GL L V+
Sbjct: 204 ---RGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYLVRVE 260
Query: 354 Y----DLPE 358
Y +LPE
Sbjct: 261 YPGEFELPE 269
>gi|401565544|ref|ZP_10806376.1| tRNA pseudouridine(38-40) synthase [Selenomonas sp. FOBRC6]
gi|400187025|gb|EJO21228.1| tRNA pseudouridine(38-40) synthase [Selenomonas sp. FOBRC6]
Length = 258
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 142/310 (45%), Gaps = 58/310 (18%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVV-GVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
R + + V Y GT + G Q+Q V VLE A K + V ++ + RTDAGVHA
Sbjct: 4 RARNIALKVAYDGTNYRGFQRQTPPVVAVQNVLERALAKVCAEEVELAAAGRTDAGVHAY 63
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V + + R P + LP RAVN L DI+VT+ F AR A
Sbjct: 64 GQVVNFFTD---GRIPVKRLP--------RAVNGLLPP--DIVVTEAWEAARVFSARHSA 110
Query: 175 QERTYFYRI--LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+ Y YR+ + P+P F ++ AW + + LD+ AM+ A +LVG HD+SSFRA+G
Sbjct: 111 TGKAYVYRLEQCTVPDP---FTRNYAWQIFQPLDVEAMRAALAMLVGTHDYSSFRAAGGA 167
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
SP+RTLDE+ + E + + +L G+
Sbjct: 168 PMSPVRTLDEIRLRE--------------------EGAGRLSCYLHGNG----------- 196
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
FLYH VR I+ + +VG G ++V I + ASP APACGL L V
Sbjct: 197 --------FLYHMVRNIMSTVVSVGLGRISVERFGEIFAVRDRRFASPTAPACGLYLVSV 248
Query: 353 KYDLPEDDQT 362
Y+ D ++
Sbjct: 249 DYEEQADRES 258
>gi|160900673|ref|YP_001566255.1| tRNA pseudouridine synthase A [Delftia acidovorans SPH-1]
gi|238687164|sp|A9BNH5.1|TRUA_DELAS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|160366257|gb|ABX37870.1| tRNA pseudouridine synthase A [Delftia acidovorans SPH-1]
Length = 282
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 139/299 (46%), Gaps = 36/299 (12%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + V Y G R+SG Q QL+ T+ LE A +F Q V + RTDAGVH V
Sbjct: 2 RVALGVAYNGQRYSGWQSQLSGNTIQDHLEAALGRFAAQEVHTLCAGRTDAGVHGLMQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D R P + R N FL DI V + VP FH+R A R
Sbjct: 62 HFDTPL--DRAPFSWV---------RGTNTFLPP--DIAVQWAQPVPDAFHSRACATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +L P SV E R V LD AMQ A + L+G HDFSSFRASGCQA SP++
Sbjct: 109 YAYVLLQSPVRPSV-EAGRVGWVFHALDGDAMQAAARHLLGEHDFSSFRASGCQAKSPVK 167
Query: 239 TLDELHVSEVVS--TALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
TL L ++ ++ A ++ + P ++++ + +E
Sbjct: 168 TLHRLSITRRMAGDGAQMAAASSMRPGDAAMECC------------------YWRFEF-- 207
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+FL+H VR I+G L A+G G ++++L A++ AA+P GL YD
Sbjct: 208 EGSAFLHHMVRNIMGCLIAIGQGTYAPQWMQQVLDARSRDAAAPTFSPDGLYFLGPVYD 266
>gi|416157245|ref|ZP_11604988.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 101P30B1]
gi|416221709|ref|ZP_11625889.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 103P14B1]
gi|416231712|ref|ZP_11628839.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 46P47B1]
gi|416233832|ref|ZP_11629480.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 12P80B1]
gi|416245421|ref|ZP_11634473.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC8]
gi|416252079|ref|ZP_11637914.1| tRNA pseudouridine synthase A [Moraxella catarrhalis CO72]
gi|416255599|ref|ZP_11639269.1| tRNA pseudouridine synthase A [Moraxella catarrhalis O35E]
gi|421780263|ref|ZP_16216752.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4]
gi|326559413|gb|EGE09838.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 46P47B1]
gi|326564997|gb|EGE15197.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 103P14B1]
gi|326566051|gb|EGE16211.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 12P80B1]
gi|326572448|gb|EGE22440.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC8]
gi|326572505|gb|EGE22494.1| tRNA pseudouridine synthase A [Moraxella catarrhalis CO72]
gi|326574101|gb|EGE24049.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 101P30B1]
gi|326576065|gb|EGE25984.1| tRNA pseudouridine synthase A [Moraxella catarrhalis O35E]
gi|407812419|gb|EKF83204.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4]
Length = 268
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 135/287 (47%), Gaps = 56/287 (19%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +E+IGTR+ G Q+Q V V+E+A + + + + RTDAGVHA + + H
Sbjct: 8 VGIEFIGTRYRGWQRQEEVIGVQAVIEKALSTIANESIELIAAGRTDAGVHAGNMIAHFV 67
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
++R L R N L DI + V+ +P DFHARF A R Y Y
Sbjct: 68 TH--AERSAHSWL---------RGTNSLLPD--DIALRWVQPMPDDFHARFSAIARRYRY 114
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
L+ P ++ + + H +LD+ AM A + +VG HDFSSFRA+ CQ+N P+RT+
Sbjct: 115 ITLNQPYRPAIL-RHQVTHEYTKLDIDAMIIASQFIVGTHDFSSFRAAACQSNQPVRTVT 173
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-ARARS 300
+N+F +H SY ++ +A
Sbjct: 174 H-------------------------------------ANLF----QHGSYLILDIQADG 192
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
FL+H VR I+G L AVG GE++ ++ AK T A P A A GL
Sbjct: 193 FLHHMVRNIMGALFAVGRGEISPETFYELMLAKNRTLAPPTASADGL 239
>gi|365926312|ref|ZP_09449075.1| tRNA pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 255
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 140/306 (45%), Gaps = 58/306 (18%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF--IGQPVSISLSSRTDAGVHAAS 115
+RY+I + Y GT F+G Q Q N RTV VLE+A +K + V I S RTDAGVHA
Sbjct: 3 KRYMITLAYDGTNFAGFQSQPNQRTVQDVLEKAVNKMSTAKEFVHIFGSGRTDAGVHAFG 62
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
+ H D+E +P + +N L D+ V D + V +FHARF A
Sbjct: 63 QIVHFDLE--------NDIPAQG---IVNGLNSMLPL--DMQVVDAKIVSKEFHARFTAH 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ G + F++ H L++ ++EA ++G HD+SSF ASG Q S
Sbjct: 110 GKRYMYRVSRG-RFVDPFKRFYTGHYKYPLNIELIKEAIPDVIGTHDYSSFVASGSQTKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ D+ V +++N+ E+I
Sbjct: 169 HVRTI------------------YDATVRENLENN----------------------EII 188
Query: 296 AR--ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+QVR++V L +G G+ V D R+ + K APA GL L V
Sbjct: 189 FEFYGNGFLYNQVRIMVAALLEIGNGKRPVHDFLRLYEVKDRNECRATAPASGLYLKKVY 248
Query: 354 YDLPED 359
YD+ +
Sbjct: 249 YDIENN 254
>gi|302388745|ref|YP_003824566.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM
16646]
gi|302199373|gb|ADL06943.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM
16646]
Length = 243
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 132/293 (45%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
I +EY GT + G QKQ N +V VLE+A + G+ VSI + RTDAGVHA V +
Sbjct: 5 ILLEYDGTNYHGWQKQNNALSVQEVLEKAIYALTGERVSIIGAGRTDAGVHARGQVANF- 63
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
R + R P E LP A+N L DI V VP DFHAR+ A+ + Y Y
Sbjct: 64 --RTNTRIPVERLP--------YAINSKLPE--DIAVKGAEAVPDDFHARYSAKAKVYTY 111
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P P + + ++ LD+ AM+ A K +G HDF++FRASG + +R +
Sbjct: 112 SIYNAPFPSPLLRR-YSYFFPLPLDVEAMRRAAKAFIGVHDFAAFRASGSSVKTSVRNIT 170
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
L V +K + + A F
Sbjct: 171 RLDV----------------------------------------KKCGKLLTIEVEADGF 190
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+I G L VGTG+ ++ I++++ A PA GL L V Y
Sbjct: 191 LYNMVRIIAGTLLEVGTGKKDPEEIPSIIESRDRERAGVTLPAHGLCLEKVIY 243
>gi|330718940|ref|ZP_08313540.1| tRNA pseudouridine synthase A [Leuconostoc fallax KCTC 3537]
Length = 250
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 142/299 (47%), Gaps = 55/299 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI---GQPVSISLSSRTDAGVHAAS 115
RY V Y G+ F G Q Q + RTV G L + ++ P+ + +SRTD GVHA
Sbjct: 3 RYKAIVSYDGSGFFGFQVQNDVRTVQGELNKVVNQMAKNPATPIRVIGASRTDTGVHALG 62
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + D+ P + ++ VR+ +N L DIM+ +V V DFHARF +
Sbjct: 63 QVINFDL-------PFNI----PAASVRKGLNTLLPR--DIMIREVEIVNDDFHARFNSH 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ YFYR LS + + F++ A H LD++ +++A L+G HDF+SF ASG Q +
Sbjct: 110 HKRYFYR-LSTQDFVDPFKRKYAGHFHWPLDIQRIEKALPDLLGEHDFASFAASGNQTQT 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
IR I + + P+ VF I
Sbjct: 169 TIR---------------------------RITRADIINKPDEQEIVF-----------I 190
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FLY+Q+R++VGVL +GTG+ V D++R+++ K + A A A GL L + Y
Sbjct: 191 FEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIQRLIEVKDRSQARFTAAAAGLYLDEISY 249
>gi|392961485|ref|ZP_10326943.1| tRNA pseudouridine synthase A [Pelosinus fermentans DSM 17108]
gi|421056277|ref|ZP_15519204.1| tRNA pseudouridine synthase A [Pelosinus fermentans B4]
gi|421058281|ref|ZP_15520993.1| tRNA pseudouridine synthase A [Pelosinus fermentans B3]
gi|421064586|ref|ZP_15526447.1| tRNA pseudouridine synthase A [Pelosinus fermentans A12]
gi|421072744|ref|ZP_15533848.1| tRNA pseudouridine synthase A [Pelosinus fermentans A11]
gi|392438693|gb|EIW16516.1| tRNA pseudouridine synthase A [Pelosinus fermentans B4]
gi|392445171|gb|EIW22503.1| tRNA pseudouridine synthase A [Pelosinus fermentans A11]
gi|392453742|gb|EIW30605.1| tRNA pseudouridine synthase A [Pelosinus fermentans DSM 17108]
gi|392460746|gb|EIW37008.1| tRNA pseudouridine synthase A [Pelosinus fermentans A12]
gi|392461090|gb|EIW37318.1| tRNA pseudouridine synthase A [Pelosinus fermentans B3]
Length = 244
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 133/293 (45%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ + Y GT + G Q+Q+N + VLE+ K +G I ++ RTD+GVHA V +
Sbjct: 6 LTLAYDGTAYHGFQRQINAIGIQQVLEDKLAKIVGHTFRIHMAGRTDSGVHAYGQVVNF- 64
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
K +P ++ R++ + DI+V D VP F A++ AQ + Y Y
Sbjct: 65 -------KTTSTIPVDRIAIASRSLLPY-----DIVVLDAEEVPDSFDAQYSAQSKIYVY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
+I P + F ++ W + + LD+ AM+EA ++++G HDFS+FRASG + SPIRT+
Sbjct: 113 KIYQHTVP-NPFLRNLVWTIPQTLDVSAMEEAAQIIIGTHDFSAFRASGGASVSPIRTIM 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
+ + + R E+ F
Sbjct: 172 AVEC----------------------------------------QLQDRILELSFWGNGF 191
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LYH VR I G L VG G+ ++ + I + + A APA GL L V+Y
Sbjct: 192 LYHMVRNITGTLVNVGLGKTSLEKFKTIFEGRDRKKAGATAPAHGLYLKEVRY 244
>gi|187478755|ref|YP_786779.1| tRNA pseudouridine synthase A [Bordetella avium 197N]
gi|123738625|sp|Q2KYM0.1|TRUA_BORA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|115423341|emb|CAJ49875.1| tRNA pseudouridine synthase A [Bordetella avium 197N]
Length = 267
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 142/310 (45%), Gaps = 60/310 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF--IGQPVSISLSSRTDAGVHAA 114
+ R + + Y G+ + G Q Q + +TV LE A +F G P+ + RTD GVHAA
Sbjct: 1 MTRIALGLSYDGSSWQGWQTQPHGQTVQDTLEAALGQFSGTGAPLDTLCAGRTDTGVHAA 60
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V HVD +++R V R VN FL S I + + V DFHARF A
Sbjct: 61 MQVVHVDTH-LNRRAESWV----------RGVNAFLPSS--ISIHWAKEVGEDFHARFSA 107
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ RTY Y + G +++ W + LD+ AM++A + L+G HDFSSFR+S CQA
Sbjct: 108 RSRTYVYLLWRGRVRPALWAHRAGW-CFQPLDVTAMRQAAQALLGEHDFSSFRSSQCQAR 166
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
P+R L L ++E S +F+
Sbjct: 167 HPVRHLTRLDIAERGSFLVFT--------------------------------------- 187
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+A +FL+H VR I+G L +G G +V + +L+A+ +P GL L + Y
Sbjct: 188 -LQANAFLHHMVRNIMGALLQIGQGRESVDWMASLLRARDRRLGAPTFSPDGLYLSAIDY 246
Query: 355 ----DLPEDD 360
+LP+ D
Sbjct: 247 PTLFELPDLD 256
>gi|146312509|ref|YP_001177583.1| tRNA pseudouridine synthase A [Enterobacter sp. 638]
gi|166991163|sp|A4WCV2.1|TRUA_ENT38 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|145319385|gb|ABP61532.1| tRNA pseudouridine synthase A [Enterobacter sp. 638]
Length = 270
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 140/309 (45%), Gaps = 60/309 (19%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
K + R + +EY G+++ G Q+Q R+V LE+A + QP+++ + RTDAGVH
Sbjct: 7 KPVHRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANQPIAVCCAGRTDAGVHGT 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H + + K + VN L GDI V V+ VP DFHARF A
Sbjct: 67 GQVVHFETTSVRK-----------DAAWTLGVNANL--PGDIAVRWVKDVPDDFHARFSA 113
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I + +V + H E LD MQ A + L+G +DF+SFRA CQ+
Sbjct: 114 TARRYRYIIYNQRLRPAVLGQGVT-HFYEPLDAERMQRAAQSLIGENDFTSFRAVQCQSR 172
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + ++VS ++ +Y V
Sbjct: 173 TPWRNVMHINVS-----------------------------------------RYGAYVV 191
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ +A +F++H VR IVG L VG G S + +L AK T A+ A A GL L V
Sbjct: 192 VDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVSVD 251
Query: 354 Y----DLPE 358
Y DLP+
Sbjct: 252 YPERFDLPK 260
>gi|331269740|ref|YP_004396232.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925]
gi|329126290|gb|AEB76235.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925]
Length = 245
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 136/294 (46%), Gaps = 55/294 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+ ++Y GTR+ G QK N T+ +E ++ +G+ +S+ S RTDAGVHA + +
Sbjct: 6 LTIQYDGTRYKGWQKLGNTDNTIQCKVENVLNELLGEEISLIASGRTDAGVHANMQIANF 65
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ + ++++ + DI+VT+V +FH+R+ +++ Y
Sbjct: 66 KTDS----------NVSNDTILKHCYKYLPH---DIVVTNVADASENFHSRYNVKKKIYT 112
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y I + P VF + ++HV E LD++ M+EA K+ +G HDF SF
Sbjct: 113 YNICNNPVH-DVFTRKYSYHVKETLDIKKMKEASKLFIGEHDFKSF-------------- 157
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
TAL S + SI +KK + EVI
Sbjct: 158 ----------TALKSKKKSTVKTIDSI----------------SFKKKDNNIEVIFTGNG 191
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY +R++VG L VG G+LT+ D+E I+ K + A APA GL L VKY
Sbjct: 192 FLYKMIRILVGSLINVGLGKLTIEDLENIMNEKDRSIAPETAPAHGLILTEVKY 245
>gi|387128051|ref|YP_006296656.1| tRNA pseudouridine synthase A [Methylophaga sp. JAM1]
gi|386275113|gb|AFI85011.1| tRNA pseudouridine synthase A [Methylophaga sp. JAM1]
Length = 259
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 135/296 (45%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + VEY G++F G Q Q RTV G L++A + + RTD GVHA + V
Sbjct: 2 RLALGVEYDGSQFHGWQFQPKQRTVQGELQKAVSLVANAQTEVFAAGRTDTGVHALNQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D E + R+ L +S++ D+ V V V DF+ARF A +R
Sbjct: 62 HFDTEAV--REERNWLLGLNSNL-----------PHDVCVKWVNPVSEDFNARFSAIKRR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y IL+ SV + R W V + LD MQ+A L+G HDFS+FRA CQA SPI+
Sbjct: 109 YRYLILNRDSRSSVHHQ-RMWWVYKPLDEHKMQQAANSLLGQHDFSAFRAQECQAKSPIK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD+L V+ ++ V A
Sbjct: 168 TLDKLIVT----------------------------------------RRDDCIAVDVEA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+H VR ++GVL +G G+ V ++L+++ A AP GL L V Y
Sbjct: 188 RSFLHHMVRNLMGVLVPIGEGKRPVDWAWQVLQSQNRNMAGVTAPPQGLYLTDVIY 243
>gi|333913029|ref|YP_004486761.1| tRNA pseudouridine synthase A [Delftia sp. Cs1-4]
gi|333743229|gb|AEF88406.1| tRNA pseudouridine synthase A [Delftia sp. Cs1-4]
Length = 282
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 139/299 (46%), Gaps = 36/299 (12%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + V Y G R+SG Q QL+ T+ LE A +F Q V + RTDAGVH V
Sbjct: 2 RVALGVAYNGQRYSGWQSQLSGNTIQDHLEAALGRFAAQEVHTLCAGRTDAGVHGLMQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D R P + R N FL DI V + VP FH+R A R
Sbjct: 62 HFDTPL--DRAPFSWV---------RGTNTFLPP--DIAVQWAQPVPDAFHSRACATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +L P SV E R V LD AMQ A + L+G HDFSSFRASGCQA SP++
Sbjct: 109 YAYVLLQSPVRPSV-EAGRVGWVFHALDGDAMQAAAQHLLGEHDFSSFRASGCQAKSPVK 167
Query: 239 TLDELHVSEVVS--TALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
TL L ++ ++ A ++ + P ++++ + +E
Sbjct: 168 TLHRLSITRRMAGDGAQMAAASSMRPGDAAMECC------------------YWRFEF-- 207
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+FL+H VR I+G L A+G G ++++L A++ AA+P GL YD
Sbjct: 208 EGSAFLHHMVRNIMGCLIAIGQGAYAPQWMQQVLDARSRDAAAPTFSPDGLYFLGPVYD 266
>gi|451822937|ref|YP_007459211.1| tRNA pseudouridine synthase A [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451775737|gb|AGF46778.1| tRNA pseudouridine synthase A [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 266
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 141/300 (47%), Gaps = 56/300 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG--QPVSISLSSRTDAGVHAA 114
++R I + Y G F+G Q QL+ +V LE+A +F + + ++ + RTD GVHA
Sbjct: 1 MKRIAIGLSYNGVFFNGWQSQLDVDSVQDSLEKAILRFTANNKRIRVTCAGRTDKGVHAT 60
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H D + ++++ V R +N FL S + V + V DFHARF A
Sbjct: 61 LQVVHFDTD-VNRKMSSWV----------RGINTFLPSS--VSVHWAKEVTEDFHARFSA 107
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
RTY Y + G S+++ W + + L+L M A + L+G HDFSSFRASGCQ+N
Sbjct: 108 ISRTYTYVLYCGRIRPSIYKDLVGWCIYD-LNLENMLMASEYLIGLHDFSSFRASGCQSN 166
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P+R + + + NG F I
Sbjct: 167 NPVRFVHYIEIKR-----------------------------NGHFIFFKI--------- 188
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+A +FLYH VR I+G L VG +V ++ +L++K + ++P GL L ++ Y
Sbjct: 189 --KANAFLYHMVRNIIGSLIEVGKSIKSVYWIKELLESKNRSLSAPTFSPSGLYLSYISY 246
>gi|302385211|ref|YP_003821033.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1]
gi|302195839|gb|ADL03410.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1]
Length = 248
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 137/303 (45%), Gaps = 59/303 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
I+ Y + +EY G+R+ G QKQ N +T+ G +E+ + GQ V + S RTDAGVHA +
Sbjct: 2 IKNYRMVLEYDGSRYDGWQKQGNTEQTIQGKIEQVLERMTGQAVEVHGSGRTDAGVHALA 61
Query: 116 NVC--HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H+D + SK ++ +N +L DI V + FH+R
Sbjct: 62 QVANFHMDGKMASKE-------------IQEYLNQYLPE--DIRVITLEPAKERFHSRLN 106
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
AQE+TY YRI G E VFE+ + + + L++ AM+ A L G HDF SF ++
Sbjct: 107 AQEKTYLYRIEMG-ERKQVFERKYIYGLYKSLNVEAMERASAYLTGEHDFKSFCSNRKMK 165
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +R L E+ + S L NG
Sbjct: 166 KSTVRVLKEIEFEQQGSRLLIRYTG------------------NG--------------- 192
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+ VR+I G L VG G+ D++ IL+AK A AP GL L V+
Sbjct: 193 -------FLYNMVRIITGTLIEVGLGQRKAEDMKGILEAKDRNQAGFTAPPEGLFLEQVR 245
Query: 354 YDL 356
Y++
Sbjct: 246 YNV 248
>gi|296113461|ref|YP_003627399.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4]
gi|416218358|ref|ZP_11624833.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 7169]
gi|416238144|ref|ZP_11631399.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC1]
gi|416244103|ref|ZP_11634297.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC7]
gi|295921155|gb|ADG61506.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BBH18]
gi|326559732|gb|EGE10142.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 7169]
gi|326568129|gb|EGE18213.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC7]
gi|326568548|gb|EGE18620.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC1]
Length = 268
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 133/287 (46%), Gaps = 56/287 (19%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +E+IGTR+ G Q+Q V V+E+A + + + + RTDAGVHA + + H
Sbjct: 8 VGIEFIGTRYRGWQRQEEVIGVQAVIEKALSTIANESIELIAAGRTDAGVHAGNMIAHFV 67
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
++R L R N L DI + V+ +P DFHARF A R Y Y
Sbjct: 68 TH--AERSAHSWL---------RGTNSLLPD--DIALRWVQPMPDDFHARFSAIARRYRY 114
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
L+ P ++ H +LD+ AM A + +VG HDFSSFRA+ CQ+N P+RT+
Sbjct: 115 ITLNQPYRPAILHHQVT-HEYTKLDIDAMIIASQFIVGTHDFSSFRAAACQSNQPVRTVT 173
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-ARARS 300
+N+F +H SY ++ +A
Sbjct: 174 H-------------------------------------ANLF----QHGSYLILDIQADG 192
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
FL+H VR I+G L AVG GE++ ++ AK T A P A A GL
Sbjct: 193 FLHHMVRNIMGALFAVGRGEISPETFYELMLAKNRTLAPPTASADGL 239
>gi|395007857|ref|ZP_10391557.1| pseudouridylate synthase I [Acidovorax sp. CF316]
gi|394314158|gb|EJE51103.1| pseudouridylate synthase I [Acidovorax sp. CF316]
Length = 272
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 134/297 (45%), Gaps = 42/297 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + V Y G +SG Q QL+ T+ LE A +F V + RTDAGVH V
Sbjct: 2 RVALGVSYNGQPYSGWQSQLSGNTIQDKLEAALARFATHRVGTLCAGRTDAGVHGLMQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D R P SS VR N FL DI V VP DFH+R A R
Sbjct: 62 HFDTPL--NRPP--------SSWVR-GTNTFLPP--DIAVQWASHVPDDFHSRGSAVARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +L P SV W V LD AM++A L+G HDF+SFRAS CQA SP++
Sbjct: 109 YAYVLLQSPVRPSVDAGRVGW-VYHPLDHAAMRQAADHLLGEHDFTSFRASACQAKSPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL + +S LG P+ G + +E A A
Sbjct: 168 TLSRIDISR-----------------------RGLGEPH---PELGWSPCYWRFEFEANA 201
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FL+H +R ++G L A+G G+ +E++L+A++ AA+P GL YD
Sbjct: 202 --FLHHMIRNLMGCLVAIGRGDQPPGWIEQVLQARSRDAAAPTFSPDGLYFQGPVYD 256
>gi|429204100|ref|ZP_19195393.1| tRNA pseudouridine synthase [Lactobacillus saerimneri 30a]
gi|428147599|gb|EKW99822.1| tRNA pseudouridine synthase [Lactobacillus saerimneri 30a]
Length = 253
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 137/307 (44%), Gaps = 62/307 (20%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF--IGQPVSISLSSRTDAGVHAAS 115
QRY + + Y GT F+G QKQ RTV V+E+A +K + + I S RTDAGVHA +
Sbjct: 3 QRYKVTIAYDGTNFAGFQKQPQQRTVQSVIEDALNKMNKTDEHIFIVGSGRTDAGVHALA 62
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVV--RRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D PHD + +R +N L D+ V D V FHARF
Sbjct: 63 QVIHFDF-------------PHDIPALGMKRGLNSMLPL--DLEVKDCEIVDDSFHARFS 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+ Y YR+ G E ++ F++ H LD+ ++ A +VG HDF+SF A+G QA
Sbjct: 108 THGKRYMYRVSRG-EFVNPFKRFYTAHYKYPLDIDKIRAALPDVVGTHDFTSFVAAGSQA 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ E V R+ H + E
Sbjct: 167 RDHVRTIYEATV----------------------------------------REDHANDE 186
Query: 294 VIAR--ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
VI FLY+QVR++V L +G G+ V D R+ + K APA GL L
Sbjct: 187 VIFEFYGNGFLYNQVRIMVAALLEIGRGQRPVHDFLRLYEVKNRKECYRTAPASGLYLKE 246
Query: 352 VKYDLPE 358
V Y+ P+
Sbjct: 247 VVYNQPQ 253
>gi|421503694|ref|ZP_15950640.1| tRNA pseudouridine synthase A [Pseudomonas mendocina DLHK]
gi|400345521|gb|EJO93885.1| tRNA pseudouridine synthase A [Pseudomonas mendocina DLHK]
Length = 276
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 141/306 (46%), Gaps = 64/306 (20%)
Query: 59 RYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAASN 116
R + +EY G R+ G Q+Q N ++ G LE A K G +P++I + RTDA VHA+
Sbjct: 8 RIALGLEYKGARYRGFQRQAGNVASIQGCLESALSKVAGGEPINIMCAGRTDASVHASGQ 67
Query: 117 VCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H D VER P + ++ +N DI VT R +P+ FHARF A
Sbjct: 68 VVHFDTAVER-----------PLHAWIMGANMN----LPKDISVTWARVMPAHFHARFSA 112
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I + P + ++ W+ LD+ M+EA + LVG HDFS+FRA+ CQA
Sbjct: 113 MARRYRYVIYNDPIRPAHMAEEVTWN-HRPLDVTRMREAARALVGTHDFSAFRATQCQAK 171
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SPI+T+ L V E H + V
Sbjct: 172 SPIKTVHHLQVIE-----------------------------------------HGCFIV 190
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ RA +FL+H VR I GVL A+G GE V +L+ + A GL L V+
Sbjct: 191 LDIRANAFLHHMVRNIAGVLMAIGAGERPVEWAREVLERADRRSGGVTAHPYGLYL--VQ 248
Query: 354 YDLPED 359
+ PE+
Sbjct: 249 VEYPEE 254
>gi|374299433|ref|YP_005051072.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis
Bay]
gi|332552369|gb|EGJ49413.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis
Bay]
Length = 266
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 136/305 (44%), Gaps = 56/305 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + + Y GTRF+G Q Q CRTV G +E + + PV I +++RTD+GVHA
Sbjct: 1 MPRLKLTLAYTGTRFAGLQIQPGCRTVQGEVEAVLARMLNGPVRIDMAARTDSGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+DV R P R+A+N L D+ VT+V VP +FH+RF A
Sbjct: 61 VVHLDVPESKMRIPW-----------RKAINALLPD--DVCVTEVEVVPPEFHSRFSATS 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+ Y Y I S E + K W + L+ AM +A + VG HDF SF+ G +P
Sbjct: 108 KVYAYTIWSELEFILPQRKPFVWRMA-GLNQTAMDKAMQHFVGRHDFKSFQNVG----TP 162
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IR D + F +E +
Sbjct: 163 IR-----------------------------DTRRTVAR-------FWREPGQTQWETVY 186
Query: 297 R--ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
R A FL VR I+G L AVG G+L +D+ ++ + + A P AP+ GL L + +
Sbjct: 187 RIQADGFLKQMVRNIIGCLVAVGRGKLCPNDIPALIAVRDRSLAPPTAPSRGLCLERIFF 246
Query: 355 DLPED 359
D+ D
Sbjct: 247 DVKAD 251
>gi|225376773|ref|ZP_03753994.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
gi|225211399|gb|EEG93753.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
Length = 247
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 140/298 (46%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R + V Y GT + G Q Q N T+ VL E K +G+ ++++ +SRTD+GVH+ N
Sbjct: 1 MKRVKLIVAYDGTNYCGWQVQPNGITIEQVLNENLSKLLGEEITVTGASRTDSGVHSMGN 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D E R P + + A+N L DI+V D VPSD+H R++
Sbjct: 61 VAIFDTE---TRMPAD--------KISFALNQRLPE--DIVVQDSCEVPSDWHPRYQVSR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+TY YRIL+ + D ++ +LD+ M++A LVG HDF SF A G Q +
Sbjct: 108 KTYEYRILNRTFRMPNRRLDTYFY-HHKLDVDKMKQAASYLVGEHDFKSFCAVGAQVKTT 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
RT+ V + G+++ IR
Sbjct: 167 TRTIYSCEVEK------------------------------DGNDIITIR---------V 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+I G L VG GE+ ++ +IL K TAA P APA GL++ ++Y
Sbjct: 188 TGNGFLYNMVRIIAGTLIRVGGGEMAPDEIPQILGKKDRTAAGPTAPAHGLTMMGIEY 245
>gi|121611771|ref|YP_999578.1| tRNA pseudouridine synthase A [Verminephrobacter eiseniae EF01-2]
gi|166229848|sp|A1WSF3.1|TRUA_VEREI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|121556411|gb|ABM60560.1| tRNA pseudouridine synthase A [Verminephrobacter eiseniae EF01-2]
Length = 272
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 143/306 (46%), Gaps = 50/306 (16%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + + Y G + G Q Q + RTV LE A +F PVS + RTDAGVH V
Sbjct: 2 RMALGISYNGQAYCGWQSQPSVRTVQDALEAALGRFATHPVSTLCAGRTDAGVHGLMQVV 61
Query: 119 HVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D ++R P S V R N FL + DI V + VP FHAR A
Sbjct: 62 HFDTPLDR-----------PAASWV--RGTNGFLPA--DIAVQWAQAVPDSFHARASALA 106
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y +L P SV E R V LD AMQ+A LVG HDFS+FRAS CQA SP
Sbjct: 107 RRYAYVLLQSPVRPSV-ESGRVGWVCHRLDHDAMQQAADYLVGEHDFSAFRASTCQAPSP 165
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL + + S Q P G + +E +A
Sbjct: 166 VKTLRRIGI---------SCRGQSPP-----------------HPALGWSPCYWRFEFVA 199
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASP-MAPACGLSLGFV--- 352
A FL+H +R I+G L A+G G+ + ++++L+A++ AA+P AP LG V
Sbjct: 200 NA--FLHHMIRNIMGCLVAIGQGKQSPQWMQQLLRARSRAAAAPTFAPDGLYFLGPVYAA 257
Query: 353 KYDLPE 358
+ LPE
Sbjct: 258 GWGLPE 263
>gi|381394434|ref|ZP_09920151.1| tRNA pseudouridine38-40 synthase [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330036|dbj|GAB55284.1| tRNA pseudouridine38-40 synthase [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 277
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 135/297 (45%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY+G +SG Q+QL+ +V +E++ K + Q VS+S + RTDAGVHA + V
Sbjct: 17 RVALGIEYMGADYSGWQRQLSVDSVQSRVEDSLAKILRQEVSVSCAGRTDAGVHATAQVV 76
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D K R +N L ++ +T + V DFHARF A R
Sbjct: 77 HFDAPVTRPLK-----------AYTRGMNTTLPK--NVAITWAKSVDDDFHARFSATARR 123
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + VF HV +++D M +A + LVG HDF+S+RA+ CQ+ +PIR
Sbjct: 124 YRYVIYNSALRSGVFNAGVT-HVFKKIDAALMHQAAQGLVGKHDFTSYRAAHCQSKTPIR 182
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
+ + V + + V +A
Sbjct: 183 LMHHIQVYRLQQFVI----------------------------------------VDVKA 202
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+FL+H VR IVG L VG+GE +S + +L K + AS A GL L V YD
Sbjct: 203 NAFLHHMVRNIVGALLDVGSGEKPISYIADLLALKDRSQASTTAKPNGLYLVQVDYD 259
>gi|355683352|ref|ZP_09062938.1| tRNA pseudouridine synthase A [Clostridium citroniae WAL-17108]
gi|354810585|gb|EHE95226.1| tRNA pseudouridine synthase A [Clostridium citroniae WAL-17108]
Length = 249
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 130/296 (43%), Gaps = 54/296 (18%)
Query: 60 YLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
Y+I + Y GTR+ G QKQ N RT+ G LEE + PV + S RTDAGVHA + V
Sbjct: 3 YVIWLSYDGTRYDGWQKQGNTDRTIQGKLEEILKRLDETPVEVRGSGRTDAGVHALAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
+ R + P D V +N +L DI V + P FH+R A +T
Sbjct: 63 DFRLNR--------EMAPRD---VMEYLNRYLPE--DIGVWKIEKAPERFHSRLNAVRKT 109
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y+I GP+ VF++ + + ELD++AM++A +L G DF SF + S +R
Sbjct: 110 YRYQIEMGPKK-DVFQRGYYYGLGLELDVKAMEQAADLLTGTRDFKSFCGNKKMKKSTVR 168
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL+ + + T L S
Sbjct: 169 TLESVQFERIGDTKLHISFT---------------------------------------G 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL VR++ G L VG G+ D+ RIL+AK A AP+ GL L V+Y
Sbjct: 190 NGFLQQMVRILTGTLIEVGLGKRQPGDMSRILEAKDRQEAGFTAPSQGLFLEKVEY 245
>gi|270157075|ref|ZP_06185732.1| tRNA pseudouridine synthase A [Legionella longbeachae D-4968]
gi|289164512|ref|YP_003454650.1| tRNA-pseudouridine synthase I [Legionella longbeachae NSW150]
gi|269989100|gb|EEZ95354.1| tRNA pseudouridine synthase A [Legionella longbeachae D-4968]
gi|288857685|emb|CBJ11528.1| tRNA-pseudouridine synthase I [Legionella longbeachae NSW150]
Length = 262
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 147/317 (46%), Gaps = 61/317 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY G+++ G Q Q TV +E A K P+S+ + RTD GVHA + V
Sbjct: 2 RIALVLEYDGSKYHGWQAQTGLHTVQQAVENALSKVADLPISVVCAGRTDTGVHATNQVI 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D E+ +R + VN FL DI V + + +FHAR+ A R
Sbjct: 62 HFDSEK--QRSIRAWI---------HGVNSFLPK--DICVKWGKELSEEFHARYSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + ++ + W +LD R M +A +VL+G +DF+SFR+ CQ+N+P+R
Sbjct: 109 YRYVIYNSAIRPALLRSNVTWQY-RQLDHRLMHQAAQVLLGENDFTSFRSVECQSNTPMR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
+ +L V+ + + ID + A
Sbjct: 168 NVYKLQVNRMGDLVI-------------IDIT---------------------------A 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPE 358
+FL+H VR I GVL AVG+G+ V VE +L+AK + APA GL L V+ + P+
Sbjct: 188 NAFLHHMVRNIAGVLIAVGSGKRPVFWVEEVLQAKDRRLGAETAPAYGLYL--VQVNYPQ 245
Query: 359 DDQTDAAESLETCPDPV 375
+ L+ CP P+
Sbjct: 246 EFSI-----LQNCPGPM 257
>gi|384917179|ref|ZP_10017310.1| tRNA pseudouridine synthase A [Methylacidiphilum fumariolicum SolV]
gi|384525438|emb|CCG93183.1| tRNA pseudouridine synthase A [Methylacidiphilum fumariolicum SolV]
Length = 257
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 138/305 (45%), Gaps = 57/305 (18%)
Query: 60 YLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCH 119
Y I + Y GT F G QKQ TV LEEA K + I +SRTDAGVHA V
Sbjct: 8 YKIILSYCGTGFHGWQKQGQLPTVQRFLEEAVAKIWQTEIHIEGASRTDAGVHAKGQVAS 67
Query: 120 VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTY 179
I+ RK ++ V++RA+N++L I V +R V +FHARF A +TY
Sbjct: 68 F----IAPRK-------LEAEVLQRALNYYLPET--IRVLHIRVVSKEFHARFHAISKTY 114
Query: 180 FYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS-GCQANSPIR 238
Y I + P + F RAWH+ +LDL++M EA + VG DF+SF +S G IR
Sbjct: 115 QYWIWNDPV-MDPFYLWRAWHIPRQLDLQSMNEAATLFVGKKDFASFVSSPGFVLKDTIR 173
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+ + + LF+ +A
Sbjct: 174 TVFDCGFTVQGQLCLFT----------------------------------------IKA 193
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPE 358
FLY VR IVG L +G G L + ++ I ++K + AP GL L +K D P
Sbjct: 194 NGFLYRMVRNIVGALVKIGLGRLDLEKLKDIFESKNRKLSPASAPPWGLYL--LKVDYPP 251
Query: 359 DDQTD 363
D +T+
Sbjct: 252 DLETN 256
>gi|431438075|ref|ZP_19513238.1| tRNA pseudouridine synthase A [Enterococcus faecium E1630]
gi|431760104|ref|ZP_19548708.1| tRNA pseudouridine synthase A [Enterococcus faecium E3346]
gi|430586910|gb|ELB25152.1| tRNA pseudouridine synthase A [Enterococcus faecium E1630]
gi|430625373|gb|ELB62013.1| tRNA pseudouridine synthase A [Enterococcus faecium E3346]
Length = 248
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V +FHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPDDIAVRQVEIVSEEFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYYPYPLDLGKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|229028278|ref|ZP_04184414.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1271]
gi|228733042|gb|EEL83888.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1271]
Length = 250
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 146/305 (47%), Gaps = 56/305 (18%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M NK + Y + ++Y G RF G Q+ N T+ G +E + +G+ + I SRTDA
Sbjct: 1 MKENK-MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDA 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V + + E L H V++ +N +L + DI VTDV VP FH
Sbjct: 60 GVHALNQVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISVTDVEEVPDRFH 106
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
AR+ ++ +TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F +
Sbjct: 107 ARYNSKAKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNA 165
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
+ S +R E++ +V+ A F I
Sbjct: 166 KSKKKSMVR---EVYTLDVMEEAGFVQIR------------------------------- 191
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FL++ VR IVG L VG G+L + IL+AK + +A A GL L
Sbjct: 192 ------VSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPYILEAKQRNQINCLAEASGLYL 245
Query: 350 GFVKY 354
V++
Sbjct: 246 ENVEF 250
>gi|89093241|ref|ZP_01166191.1| tRNA-pseudouridine synthase I [Neptuniibacter caesariensis]
gi|89082537|gb|EAR61759.1| tRNA-pseudouridine synthase I [Neptuniibacter caesariensis]
Length = 283
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 133/311 (42%), Gaps = 70/311 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQL--NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
RY + VEY G + G Q Q + ++ +E+A K PVS+ + RTDA V+A
Sbjct: 23 RYALCVEYSGAEYRGWQIQREGDVPSIQATVEKALSKIANAPVSVICAGRTDARVNATYQ 82
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-----DIMVTDVRCVPSDFHAR 171
+ H D S VRR ++ DI + + VP FHAR
Sbjct: 83 IIHFD------------------SPVRRDERAWVMGTNTNLPDDIAIQWAKQVPESFHAR 124
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
F A ER Y Y I S P ++ K W +E+D+ MQEA K LVG HDF+S+RA GC
Sbjct: 125 FSALERRYRYLIYSNPVKPAILPKGITW-TYKEMDVARMQEAVKHLVGEHDFTSYRAVGC 183
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
QA+SP+RT+ E F + ++ R
Sbjct: 184 QAHSPVRTVKE----------------------------------------FNVYREGRL 203
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
+ RA +FL+H +R GVL +G GE + +L A+ AP GL
Sbjct: 204 VILDVRANAFLHHMIRNFAGVLMTIGCGEAEPIWAKEVLDARDRRQGGVTAPPFGLYFVD 263
Query: 352 VKY----DLPE 358
KY DLP+
Sbjct: 264 AKYPEEFDLPK 274
>gi|408410546|ref|ZP_11181756.1| Pseudouridine synthase [Lactobacillus sp. 66c]
gi|408410767|ref|ZP_11181968.1| Pseudouridine synthase [Lactobacillus sp. 66c]
gi|407875106|emb|CCK83774.1| Pseudouridine synthase [Lactobacillus sp. 66c]
gi|407875327|emb|CCK83562.1| Pseudouridine synthase [Lactobacillus sp. 66c]
Length = 261
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 136/300 (45%), Gaps = 52/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + + Y G F G Q Q RT+ G +EE + GQ V + S RTDAGVHA
Sbjct: 1 MTRYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKRMTKGQDVRVYGSGRTDAGVHAVG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D PG +PP + + RA+N Q D++ TD V DFH+RF +
Sbjct: 61 QVIHFDY-------PGREIPPQN---MIRALNS--QLPMDMVFTDCAIVDKDFHSRFSVK 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ S ++ F++ H +D+ MQ A K L+G HDF+SF ASG Q
Sbjct: 109 GKWYRYRV-SLEHFVNPFKRFYTGHYPYPVDVEKMQIAAKDLLGRHDFTSFAASGGQIED 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R D +V+ V Q+ V+ I
Sbjct: 168 KVR--DMYYVNVAVDK------EQNEIVMDFI---------------------------- 191
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A FLY+ VR++V L +G G V D++R++KAK A A GL L V YD
Sbjct: 192 --ATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIKAKNRLEVQQTAQASGLYLYHVFYD 249
>gi|381208363|ref|ZP_09915434.1| tRNA pseudouridine synthase A [Lentibacillus sp. Grbi]
Length = 248
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 130/294 (44%), Gaps = 56/294 (19%)
Query: 64 VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNVCHVDV 122
+ Y GT FSG Q Q RTV G LEEA K G V + S RTD GVHA + H +
Sbjct: 8 ISYDGTNFSGLQIQSRERTVQGELEEALAKIHKGAYVKVYPSGRTDKGVHAKAQAIHFES 67
Query: 123 ERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYR 182
+ +LP + +RA+N L S DI V + VP+ FHARF E+ Y Y
Sbjct: 68 DY-------NLLP----ADWKRALNAMLPS--DIHVNEAEEVPASFHARFDVLEKEYRYY 114
Query: 183 ILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSF-RASGCQANSPIRTLD 241
IL+ PEP VF+++ + LD+ MQE CK G HDF++F A S +RTL
Sbjct: 115 ILNEPEP-DVFKRNYVYQYPYTLDIAKMQETCKYFEGTHDFTTFSSAKASVKGSKVRTLV 173
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
E+ GS + E + R F
Sbjct: 174 EVSCQ------------------------------REGSQI----------EFVMRGHGF 193
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
LY+ R+IVG L VG G L +++ R+ K A P GL L V+Y+
Sbjct: 194 LYNMARIIVGTLLEVGRGNLEPAEIPRLFDQKDRQLAGDTVPPQGLYLRNVRYE 247
>gi|336394592|ref|ZP_08575991.1| tRNA pseudouridine synthase A [Lactobacillus farciminis KCTC 3681]
Length = 248
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 137/302 (45%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + + Y GT+F G Q+Q + RTV GVLE+A K GQ V + S RTDAGVHA
Sbjct: 1 MTRYKLTIAYDGTKFHGFQRQNDLRTVQGVLEKALTKMTKGQHVDVVGSGRTDAGVHAFG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D PG+ +P + + +A+N + D++V D V +FHARF +
Sbjct: 61 QVIHFDY-------PGQ-MPAQN---MLKAINSLMPL--DVLVKDSAIVDENFHARFGVK 107
Query: 176 ERTYFYRILSG--PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+TY YR+ G +P F++ H ++ + +Q A K L G HDF+SF ASG
Sbjct: 108 RKTYQYRVDCGYYTDP---FKRFYTGHYPYKISVDKIQTALKDLEGEHDFTSFAASGGVI 164
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+ +RT + S + N D V N
Sbjct: 165 ENKVRT--------IYSATCVYNKNNDELVFEFTGN------------------------ 192
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+ VR++V L +G G V D R+ + K A APA GL L V
Sbjct: 193 ------GFLYNMVRILVATLLEIGNGRRDVHDFLRLFEVKDRQEARGTAPASGLYLKEVF 246
Query: 354 YD 355
YD
Sbjct: 247 YD 248
>gi|398963183|ref|ZP_10679437.1| pseudouridylate synthase I [Pseudomonas sp. GM30]
gi|398150042|gb|EJM38665.1| pseudouridylate synthase I [Pseudomonas sp. GM30]
Length = 284
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 140/312 (44%), Gaps = 73/312 (23%)
Query: 59 RYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + +EY G+R+SG Q+QL TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RVALGLEYKGSRYSGWQRQLTGVATVQEELEKALSKVANSPVSLQCAGRTDAGVHACGQV 77
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + D S+ + + DI V+ R +P+ FHARF+A R
Sbjct: 78 VHFDTQV-------------DRSLKAWVMGANINLPHDISVSWARVMPAHFHARFKAIAR 124
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSFRASG 230
Y Y I + ++ R H+ EE LD+ M +A + L+G HDFS+FRA
Sbjct: 125 RYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAQAAQYLIGTHDFSAFRAGQ 176
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA SPI+ + L V+ +G V I
Sbjct: 177 CQAKSPIKKMHHLRVTR-----------------------------HGKMIVLDI----- 202
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
RA +FL+H VR I GVL +G GE V ++ +L+++ + A GL L
Sbjct: 203 ------RANAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRERRSGGVTAHPYGLYLV 256
Query: 351 FVKYD----LPE 358
V+Y LPE
Sbjct: 257 QVEYHDEFPLPE 268
>gi|255067233|ref|ZP_05319088.1| tRNA pseudouridine synthase A [Neisseria sicca ATCC 29256]
gi|255048601|gb|EET44065.1| tRNA pseudouridine synthase A [Neisseria sicca ATCC 29256]
Length = 272
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 145/311 (46%), Gaps = 58/311 (18%)
Query: 46 TVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLS 104
+ TE +ST K IQR+ + + Y G+RF G QKQ + TV VLE A + G+ + ++
Sbjct: 3 SYTESLST-KTIQRWALTLSYDGSRFYGWQKQADGLPTVQTVLESALSQIAGETIRTIVA 61
Query: 105 SRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCV 164
RTD GVHA + V H D + V P + V R VN +L EG + V + V
Sbjct: 62 GRTDTGVHATAQVVHFDTQ---------VARPEQAWV--RGVNAYL-PEG-VAVLFAQQV 108
Query: 165 PSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAW-HVTEELDLRAMQEACKVLVGCHDF 223
FHARF A R Y Y + S P + + W H+ +LD MQ+A +L G HDF
Sbjct: 109 APHFHARFDAYGRRYRYLLESSPVRSPILQGKVGWTHL--KLDPEKMQQAALLLEGEHDF 166
Query: 224 SSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVF 283
SSFRA CQA SP++T L+S+ +P +D
Sbjct: 167 SSFRAVECQAKSPVKT-------------LYSAKISGTPQFLKLD--------------- 198
Query: 284 GIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAP 343
+FL+H VR I+G L VG+G L++S + +++ ++ A P
Sbjct: 199 ------------LHGNAFLHHMVRNIMGALVYVGSGRLSISGFQDLIEERSRLKAPPTFM 246
Query: 344 ACGLSLGFVKY 354
GL L V Y
Sbjct: 247 PDGLYLTGVDY 257
>gi|261340711|ref|ZP_05968569.1| tRNA pseudouridine synthase A [Enterobacter cancerogenus ATCC
35316]
gi|288317127|gb|EFC56065.1| tRNA pseudouridine synthase A [Enterobacter cancerogenus ATCC
35316]
Length = 270
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 141/310 (45%), Gaps = 60/310 (19%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
+K + R + +EY G+++ G Q+Q R+V LE+A + +P+++ + RTDAGVH
Sbjct: 6 HKPVHRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVLCAGRTDAGVHG 65
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H + + K + VN L GDI V V+ VP DFHARF
Sbjct: 66 TGQVVHFETTAVRK-----------DAAWTLGVNANL--PGDIAVRWVKNVPDDFHARFS 112
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + +V + H E LD MQ A + L+G +DF+SFRA CQ+
Sbjct: 113 ATARRYRYVIYNQRLRPAVLSQGVT-HFYEPLDAERMQRAAQCLIGENDFTSFRAVQCQS 171
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+P R + ++VS ++ +Y
Sbjct: 172 RTPWRNVMHINVS-----------------------------------------RYGAYV 190
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V+ +A +F++H VR IVG L VG G S + +L AK T A+ A A GL L V
Sbjct: 191 VVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVSV 250
Query: 353 KY----DLPE 358
Y DLP+
Sbjct: 251 DYPDRFDLPK 260
>gi|325981656|ref|YP_004294058.1| tRNA pseudouridine synthase A [Nitrosomonas sp. AL212]
gi|325531175|gb|ADZ25896.1| tRNA pseudouridine synthase A [Nitrosomonas sp. AL212]
Length = 265
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 135/301 (44%), Gaps = 58/301 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R ++ +EY G+R+ G Q Q ++ LE A K + + + + RTDAGVHA
Sbjct: 1 MARIILVLEYDGSRYCGWQSQPENCSIQNALETALSKIAHEEIHVITAGRTDAGVHALYQ 60
Query: 117 VCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H D V+R P ++ V R VN FL DI V V FHAR+ A
Sbjct: 61 VVHFDTFVQR-----------PLNAWV--RGVNAFLPD--DIAVLWASEVSDRFHARYSA 105
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
ER Y Y +L+ V K W + L L MQ A +L+G HDFSSFRA+ CQA
Sbjct: 106 LERRYLYFLLNQSVRPGVNHKKVGW-FHQPLQLDIMQRAANILIGEHDFSSFRAAACQAK 164
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SPIRT+ +L ++ +G +F +
Sbjct: 165 SPIRTITQLKIAR-----------------------------HGNLLIFDL--------- 186
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RA +FL H VR I+G L +G G+ + + +L+ A+P GL L VKY
Sbjct: 187 --RANAFLQHMVRNIIGCLVYIGKGKYSSEWMLELLEGCNRAYAAPTFSPAGLYLAGVKY 244
Query: 355 D 355
D
Sbjct: 245 D 245
>gi|419706260|ref|ZP_14233789.1| tRNA pseudouridine synthase A [Streptococcus salivarius PS4]
gi|383284007|gb|EIC81942.1| tRNA pseudouridine synthase A [Streptococcus salivarius PS4]
Length = 248
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 134/298 (44%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q + R++ +E+ + G PV + + RTDAGVHA V
Sbjct: 3 RYKAIISYDGTLFSGFQRQPDARSIQEEIEKTLLRLNSGTPVVVHGAGRTDAGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + +R+P ++ D+ Q DI + + V DFHAR+ +
Sbjct: 63 IHFDLPQ--EREPEKLRFGLDT-----------QCPDDIDIVSIELVSEDFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYATHYPYPLSLALMQEAAKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQARVS--------------------------------------IDEKTGFYVFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS V+ +L+++ A P A GL L +KY+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTASGNGLYLKEIKYE 248
>gi|407696460|ref|YP_006821248.1| tRNA pseudouridine synthase A [Alcanivorax dieselolei B5]
gi|407253798|gb|AFT70905.1| tRNA pseudouridine synthase A [Alcanivorax dieselolei B5]
Length = 262
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 129/299 (43%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ R +AVEY G+RF G Q Q + RTV LE+A + PV++ + RTD GVHA
Sbjct: 1 MTRIALAVEYDGSRFHGWQTQADGVRTVQWHLEQALSRVADHPVTLICAGRTDTGVHATG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
VCH D + R D N FL D+ + V DFHARF A
Sbjct: 61 QVCHFDSN--ANR---------DMKAWVMGGNRFLPD--DVAIRWAVPVSDDFHARFSAF 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y Y I + P ++F + W+ LD++ M +A + L+G HDF+S+R CQA S
Sbjct: 108 RRCYRYVIYNAGAPPALFRRQVTWN-HRPLDVQRMADAARALLGTHDFTSYRCVHCQAKS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PI+TL L I+++ R +
Sbjct: 167 PIKTLHRL----------------------------------------DIQQRGRMIILE 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A +FL H VR I GVL A+G G V +L A+ AP GL L + Y
Sbjct: 187 VEANAFLMHMVRNIAGVLMAIGAGHQPVEWAAEVLAARDRREGGVTAPPYGLYLVDIGY 245
>gi|296131870|ref|YP_003639117.1| tRNA pseudouridine synthase A [Thermincola potens JR]
gi|296030448|gb|ADG81216.1| tRNA pseudouridine synthase A [Thermincola potens JR]
Length = 246
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 139/295 (47%), Gaps = 56/295 (18%)
Query: 62 IAVEYIGTRFSGSQKQL--NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCH 119
+ +EY GT + G QKQ N T+ LE+A K G+ +S++ + RTDAGVHA V +
Sbjct: 6 MTIEYDGTSYHGFQKQADQNLPTIQEALEKALRKLTGEEISVTGAGRTDAGVHALGQVIN 65
Query: 120 VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTY 179
E S G + RA+N L DI+ D P DFHA+F A+++TY
Sbjct: 66 FYTE--SSIPTGNFV---------RALNSVLPE--DIVAKDAVEAPGDFHAQFWAKKKTY 112
Query: 180 FYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRT 239
Y I + P SVF + + V +L++ M++A LVG HDFS+FRA+G A S IRT
Sbjct: 113 RYTIFNDTVP-SVFYRRYSLFVPCKLNVDNMRKAASFLVGQHDFSAFRAAGSTARSSIRT 171
Query: 240 LDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARAR 299
+ + + Q+ ++ V A
Sbjct: 172 MYR------------AEVEQEGELI----------------------------HVYLEAN 191
Query: 300 SFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+I G L +G G+L V +++ I+ + T A P P GL L V+Y
Sbjct: 192 GFLYNMVRIITGTLLYIGQGKLRVEEMKDIIASGDRTLAGPTVPPQGLCLMRVEY 246
>gi|229489482|ref|ZP_04383345.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121]
gi|229323579|gb|EEN89337.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121]
Length = 294
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 145/307 (47%), Gaps = 63/307 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + + Y GT FSG +Q + RTV G +E+ + +PV ++++ RTDAGVHA
Sbjct: 20 LVRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRRPVQLTVAGRTDAGVHATGQ 79
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVDV PGE+LP S +VRR + FL D+ V + VP DF ARF A
Sbjct: 80 VAHVDV-------PGELLPDDPSRLVRR-LARFLPK--DVRVKQISVVPGDFDARFSAMR 129
Query: 177 RTYFYRILS---GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
R Y YR+ + G EPL +D + + LDL AMQEA L+G H+F++F C+
Sbjct: 130 RYYEYRVTNAAFGVEPLRA--RDTVSY-PKPLDLGAMQEASNRLLGLHNFAAF----CKR 182
Query: 234 NSPIRTLDELHVSEV--VSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
T+ EL + V T + +N D
Sbjct: 183 REGATTVRELQRFDWTQVGTVFTAYVNAD------------------------------- 211
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
+F + VR +VG + +VG G T V +L + +++ +APA GLSL
Sbjct: 212 --------AFCWSMVRSLVGAVLSVGEGRRTADWVAGLLDETSRSSSILVAPAHGLSL-- 261
Query: 352 VKYDLPE 358
V+ D P+
Sbjct: 262 VRVDYPD 268
>gi|430842461|ref|ZP_19460376.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1007]
gi|431081677|ref|ZP_19495767.1| tRNA pseudouridine synthase A [Enterococcus faecium E1604]
gi|431118130|ref|ZP_19498084.1| tRNA pseudouridine synthase A [Enterococcus faecium E1613]
gi|431592305|ref|ZP_19521541.1| tRNA pseudouridine synthase A [Enterococcus faecium E1861]
gi|430493542|gb|ELA69845.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1007]
gi|430565609|gb|ELB04755.1| tRNA pseudouridine synthase A [Enterococcus faecium E1604]
gi|430568087|gb|ELB07144.1| tRNA pseudouridine synthase A [Enterococcus faecium E1613]
gi|430591930|gb|ELB29957.1| tRNA pseudouridine synthase A [Enterococcus faecium E1861]
Length = 248
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ K G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V +FHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRQVEIVSEEFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYYPYPLDLGKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|320530646|ref|ZP_08031695.1| tRNA pseudouridine synthase A [Selenomonas artemidis F0399]
gi|402303395|ref|ZP_10822490.1| tRNA pseudouridine(38-40) synthase [Selenomonas sp. FOBRC9]
gi|320137097|gb|EFW29030.1| tRNA pseudouridine synthase A [Selenomonas artemidis F0399]
gi|400378639|gb|EJP31491.1| tRNA pseudouridine(38-40) synthase [Selenomonas sp. FOBRC9]
Length = 258
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 139/310 (44%), Gaps = 62/310 (20%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
R + + + Y GTR+ G Q+Q L V VLE+ + G+PV ++ + RTD GVHA
Sbjct: 4 RARNIALRLSYDGTRYHGFQRQSLPVVAVQNVLEKVLAEVCGEPVELAAAGRTDTGVHAY 63
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V + + R P LP RAVN L DI V DF AR +
Sbjct: 64 GQVVNFFTD---GRIPVAQLP--------RAVNGLLPP--DIAVMAAWEAGRDFSARHSS 110
Query: 175 QERTYFYRI--LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
+ Y YRI + P P F ++ AW + LD+ AM+ ++LVG HD+SSFRA+G
Sbjct: 111 TGKAYLYRIERCTVPNP---FTRNYAWQIFRPLDVAAMRTVLRLLVGTHDYSSFRAAGGA 167
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
SP+RTLDE+ + E ++ LS + NG
Sbjct: 168 PMSPVRTLDEIRLDE-----------EEGGQLSCYMHG------NG-------------- 196
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
FLYH VR I+ + VG G ++ I A ASP APACGL L V
Sbjct: 197 --------FLYHMVRNIMSTVVHVGLGRISTDRFTEIFAAHDRRLASPTAPACGLYLLHV 248
Query: 353 KY----DLPE 358
Y D+P+
Sbjct: 249 DYAGRTDVPD 258
>gi|153813476|ref|ZP_01966144.1| hypothetical protein RUMOBE_03896 [Ruminococcus obeum ATCC 29174]
gi|149830420|gb|EDM85512.1| tRNA pseudouridine synthase A [Ruminococcus obeum ATCC 29174]
Length = 250
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 141/298 (47%), Gaps = 54/298 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R + V Y GT +SG Q Q N T+ GVL +A +G+ + I +SRTDAGVHA N
Sbjct: 5 MKRVGLVVAYDGTNYSGWQIQPNGITIQGVLNDALTDLLGEKIEIMGASRTDAGVHALGN 64
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D + R PGE + A+N L DI + V DFH R+ E
Sbjct: 65 VAVFDT---NTRIPGE--------KISYALNQRLPE--DIRIQLSEEVEPDFHPRYCDSE 111
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+TY YRIL+ P+ E+ ++ +LD+ M+EA L+G HDF+SF +G Q S
Sbjct: 112 KTYEYRILNRKFPVPT-ERLYSYFYHYKLDVDKMREATSYLIGRHDFASFCGTGAQVKST 170
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTL + I +D +++ IR K
Sbjct: 171 VRTLTGI------------DIWRDGDIVT-------------------IRVK-------- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+I G L VG G+ V++IL A + + P APA GL+L +++
Sbjct: 192 -GEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDRSVSGPTAPAHGLTLMGIEF 248
>gi|319943971|ref|ZP_08018251.1| tRNA pseudouridine synthase A [Lautropia mirabilis ATCC 51599]
gi|319742732|gb|EFV95139.1| tRNA pseudouridine synthase A [Lautropia mirabilis ATCC 51599]
Length = 307
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 146/337 (43%), Gaps = 61/337 (18%)
Query: 25 DHQNDSVEEEEEYPEEVPETRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLN----C 80
D Q ++ E P ET+ M R R++ V Y G F G QKQ
Sbjct: 8 DRQAEAGRAEGVLPAGGAETQPADGQMGDVPR-HRWVCGVSYDGRDFCGWQKQPPVPGLA 66
Query: 81 RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSS 140
+V +E A GQ + I + RTDAGVHA V ++ ++R P +
Sbjct: 67 PSVQTTVEAALSAVAGQTIDIRCAGRTDAGVHALEQV--IEFSTTAQRPP---------T 115
Query: 141 VVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWH 200
R N L + +DF ARF A+ERTY+Y ++ P +++ W
Sbjct: 116 AWVRGANAHLPDTVAVRWAAPLAPDADFDARFSARERTYWYVLIDSPVAPPLWQGRAGW- 174
Query: 201 VTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQD 260
LD+ MQ A + ++G HDFSSFRAS CQA +P+RTL E V
Sbjct: 175 THRPLDVARMQAAARSVLGTHDFSSFRASECQAATPVRTLTEWTV--------------- 219
Query: 261 SPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR--ARSFLYHQVRLIVGVLKAVGT 318
++H ++ V+ R A +FL+H VR +VG L VG
Sbjct: 220 --------------------------ERHGAF-VMMRLTANAFLHHMVRNLVGSLVYVGD 252
Query: 319 GELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
G VS + +L A++ +A +P A GL L V+YD
Sbjct: 253 GRRPVSWMAEVLAARSRSAGAPTFAAGGLYLASVRYD 289
>gi|238022472|ref|ZP_04602898.1| hypothetical protein GCWU000324_02380 [Kingella oralis ATCC 51147]
gi|237867086|gb|EEP68128.1| hypothetical protein GCWU000324_02380 [Kingella oralis ATCC 51147]
Length = 260
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 133/305 (43%), Gaps = 61/305 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ RY + + Y G+ F G QKQ T+ LE A + G+PV+I+ + RTD GVHA +
Sbjct: 1 MTRYALTLSYNGSAFFGFQKQAAGIPTIQTALEHALAQIAGEPVAITAAGRTDTGVHATA 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D P + V R VN L I V + V DFHARF A
Sbjct: 61 QVVHFDSHATR---------PLTAWV--RGVNAHLPD--GIAVLHAQAVAPDFHARFDAC 107
Query: 176 ERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
R Y Y + S P PL V RA LD+ AMQ+A +L+G HDFSSFRA+ CQA
Sbjct: 108 GRHYRYLLQSAPVRSPLLV---GRAGWTHYPLDMAAMQKAAALLLGEHDFSSFRAAECQA 164
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ + S P ID
Sbjct: 165 KSPVKTVYAIAFS-------------GCPSFIKIDF------------------------ 187
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A +FL+H VR IVG L VG G L V + + A++ A P A GL F
Sbjct: 188 ---HANAFLHHMVRNIVGALVYVGCGRLAVGEFAEMFAAQSRLTAPPTFMADGLY--FTG 242
Query: 354 YDLPE 358
D PE
Sbjct: 243 VDYPE 247
>gi|383774858|ref|YP_005453927.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. S23321]
gi|381362985|dbj|BAL79815.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. S23321]
Length = 245
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 134/298 (44%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE A G + + + RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+E+ PP R +N L+ I V + VP F ARF A +
Sbjct: 61 VAHVDIEK--------QFPP---GRFRDGLNAHLRPH-PIAVLEAEIVPDSFEARFSAIK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L++ + AW V +LD AM A + L+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRIVNTRANLAL-DIGHAWRVPRKLDADAMHAAARRLLGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V + R +I
Sbjct: 168 EKTLDQLDVL----------------------------------------RDGREITIIT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G T D+ L A+ A +AP GL L V Y
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLYLVKVDY 245
>gi|291562779|emb|CBL41595.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4]
Length = 255
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 136/295 (46%), Gaps = 53/295 (17%)
Query: 62 IAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
I +EY G+R+ G QKQ N T+ G LE + G+ + + S RTDAGVHA V +
Sbjct: 7 ITLEYDGSRYDGWQKQGNTDNTIQGKLENVLFRMAGEEIEVHGSGRTDAGVHARGQVANF 66
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ E+ P D R +N +L DI V + VP FH+R A +TY
Sbjct: 67 HIN-------AEICP--DGEAAREYLNRYLPD--DIRVLSAKIVPERFHSRLSATSKTYG 115
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y + +G + +VFE+ + ++LD++AM++A + L+G HDF SF A+ S +R +
Sbjct: 116 YYVETGDKK-NVFERKYVYGCGKKLDVKAMRQAAEFLIGEHDFKSFCANRRMKKSTVRRI 174
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
DE+ + +++ +KL E +
Sbjct: 175 DEIRI---------------------VEHGTKL-------------------EFLYTGNG 194
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY+ VR++ G L VG+G ++ I+ AK A AP GL L V Y+
Sbjct: 195 FLYNMVRILTGTLLEVGSGTRRPEKMKEIIAAKNRDMAGRTAPPEGLFLLHVGYE 249
>gi|354724385|ref|ZP_09038600.1| tRNA pseudouridine synthase A [Enterobacter mori LMG 25706]
Length = 270
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 140/309 (45%), Gaps = 60/309 (19%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
K + R + +EY G+++ G Q+Q R+V LE+A + +P+++ + RTDAGVH
Sbjct: 7 KPVHRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVLCAGRTDAGVHGT 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H + + K + VN L GDI V V+ VP DFHARF A
Sbjct: 67 GQVVHFEPTAVRK-----------DAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSA 113
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I + +V + H E LD MQ A + L+G +DF+SFRA CQ+
Sbjct: 114 TARRYRYVIYNQRLRPAVLSQGVT-HFYEPLDAERMQRAAQCLIGENDFTSFRAVQCQSR 172
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + ++VS ++ +Y V
Sbjct: 173 TPWRNVMHINVS-----------------------------------------RYGAYVV 191
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ +A +F++H VR IVG L VG G S + +L AK T A+ A A GL L V
Sbjct: 192 VDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVSVD 251
Query: 354 Y----DLPE 358
Y DLP+
Sbjct: 252 YPDRFDLPK 260
>gi|332524310|ref|ZP_08400532.1| tRNA pseudouridine synthase A [Rubrivivax benzoatilyticus JA2]
gi|332107641|gb|EGJ08865.1| tRNA pseudouridine synthase A [Rubrivivax benzoatilyticus JA2]
Length = 274
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 131/299 (43%), Gaps = 58/299 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + + Y G R+ G Q Q + RTV VLE A +F PV + RTDAGVHA + V
Sbjct: 16 RIALGIAYRGARYHGWQSQPDGRTVQDVLERALGQFAATPVGTLCAGRTDAGVHAFNQVV 75
Query: 119 HVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D VER D R N +L D+ V R V + FHAR AQ
Sbjct: 76 HFDAPVER-------------DEFSWVRGTNRYLPD--DVAVQWCRRVDARFHARNSAQG 120
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y + IL P ++ W V LD AM+ A L+G HDFSSFRA+GCQA +P
Sbjct: 121 RRYRFVILEAPVRPAIEAGACGW-VFRPLDGDAMRAAAAHLIGEHDFSSFRAAGCQALTP 179
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++T+ + G+ ++ + +
Sbjct: 180 VKTMRSI----------------------------------------GVERRGAYWRIEF 199
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A +FL+H VR IVG L VG+G + +L A++ AA+P P GL YD
Sbjct: 200 DASAFLHHMVRNIVGCLVTVGSGRQRPEWMAEVLAARSRDAAAPTFPPDGLYFVGPYYD 258
>gi|295109363|emb|CBL23316.1| pseudouridylate synthase I [Ruminococcus obeum A2-162]
Length = 246
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 141/298 (47%), Gaps = 54/298 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R + V Y GT +SG Q Q N T+ GVL +A +G+ + I +SRTDAGVHA N
Sbjct: 1 MKRVGLVVAYDGTNYSGWQIQPNGITIQGVLNDALSDLLGEKIEIMGASRTDAGVHALGN 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D + R PGE + A+N L DI + V DFH R+ E
Sbjct: 61 VAVFDT---NTRIPGE--------KISYALNQRLPE--DIRIQLSEEVEPDFHPRYCDSE 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+TY YRIL+ P+ E+ ++ +LD+ M+EA L+G HDF+SF +G Q S
Sbjct: 108 KTYEYRILNRKFPVPT-ERLYSYFYHYKLDIEKMREATSYLIGRHDFASFCGTGAQVKST 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RT+ + V +D +++ IR K
Sbjct: 167 VRTITGIDVW------------RDGDIVT-------------------IRVK-------- 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+I G L VG G+ V++IL A + + P APA GL+L +++
Sbjct: 188 -GEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDRSVSGPTAPAHGLTLMGIEF 244
>gi|49083216|gb|AAT50973.1| PA3114, partial [synthetic construct]
Length = 286
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 140/309 (45%), Gaps = 63/309 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ R + +EY G+R+ G Q+Q +V LE A K +PV + + RTDA VHA+
Sbjct: 17 VSRIALGIEYKGSRYRGWQRQEAGVPSVQEALERASSKVAAEPVGVICAGRTDAAVHASG 76
Query: 116 NVCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D VER P + V+ N DI VT R +P+ FHARF
Sbjct: 77 QVVHFDTAVER-----------PLKAWVMGTNAN----LPADISVTWARVMPAHFHARFS 121
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M+EA +VLVG HDF+SFRA CQA
Sbjct: 122 AMARRYRYAIYNDPIRPAHLAEEVTWN-HRPLDIGRMREAAQVLVGTHDFTSFRAVQCQA 180
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ + + E +G V I
Sbjct: 181 KSPVKTMHHVRLLE-----------------------------HGRLIVLDI-------- 203
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R +FL+H VR I GVL +G GE + + +L+A+ A A GL L V+
Sbjct: 204 ---RGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYLVRVE 260
Query: 354 Y----DLPE 358
Y +LPE
Sbjct: 261 YPGEFELPE 269
>gi|116051110|ref|YP_790059.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa UCBPP-PA14]
gi|115586331|gb|ABJ12346.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa UCBPP-PA14]
Length = 285
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 139/309 (44%), Gaps = 63/309 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ R + +EY G+R+ G Q+Q +V LE A K +PV + + RTDA VHA+
Sbjct: 17 VSRIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASG 76
Query: 116 NVCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D VER P + V+ N DI VT R +P+ FHARF
Sbjct: 77 QVVHFDTAVER-----------PLKAWVMGTNAN----LPADISVTWARVMPAHFHARFS 121
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M+EA +VLVG HDF+SFRA CQA
Sbjct: 122 AMARRYRYAIYNDPIRPAHLAEEVTWN-HRPLDIGRMREAAQVLVGTHDFTSFRAVQCQA 180
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ + + E +G V I
Sbjct: 181 KSPVKTMHHVRLLE-----------------------------HGRLIVLDI-------- 203
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R +FL+H VR I GVL +G GE + + +L+ + A A GL L V+
Sbjct: 204 ---RGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLETRDRRAGGVTAHPYGLYLVRVE 260
Query: 354 Y----DLPE 358
Y +LPE
Sbjct: 261 YPGEFELPE 269
>gi|390333105|ref|XP_781664.3| PREDICTED: tRNA pseudouridine synthase-like 1-like
[Strongylocentrotus purpuratus]
Length = 303
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 154/318 (48%), Gaps = 54/318 (16%)
Query: 57 IQRYLIAVEYIGTRFSG----------SQKQLNCRTVV-GVLEEAFHKFIGQPVSISLSS 105
+ R+LI +YIGTR+ G +K + + V+ G L+E I PV + +SS
Sbjct: 1 MGRFLIYFQYIGTRYRGVVRATSLSASGEKFVGVQDVIEGALDE-LKPVI--PVKLHVSS 57
Query: 106 RTDAGVHAASNVCHVDVERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRC 163
RTD GVHA N H D+ SKR +P ++L + + AVN L+ + DI +
Sbjct: 58 RTDTGVHALCNTAHFDMIFKSKRTGEPRDIL----AESITAAVNKKLE-DHDIRIIKTLR 112
Query: 164 VPSDFHARFRAQERTYFYRILSGPEP--LSVFEKDRAWHVTEELDLRAMQEACKVLVGCH 221
V FH++ A RTY YR+ G L VFEK+R+W + LD+ +M+EA VG H
Sbjct: 113 VQDSFHSQHLAMGRTYLYRLAMGCRQIELPVFEKNRSWAFDQRLDIPSMKEASGRFVGTH 172
Query: 222 DFSSFRASGCQAN--SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGG 279
DF++FR S + SPI+T+D + L+ N+ + +
Sbjct: 173 DFTAFRNSSMDDDKKSPIKTIDMIEFRR-TRGFLYHHCNKMAQL---------------- 215
Query: 280 SNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA- 338
E+ +RSFLY Q+R + G L AVG G + S + IL+++ +
Sbjct: 216 ----------EFLELTFHSRSFLYKQIRRMTGALVAVGLGRIAPSHITTILESRDNSHMH 265
Query: 339 -SPMAPACGLSLGFVKYD 355
+ MAPA GL L V Y+
Sbjct: 266 RTTMAPAHGLYLKEVLYN 283
>gi|366052631|ref|ZP_09450353.1| tRNA pseudouridine synthase A [Lactobacillus suebicus KCTC 3549]
Length = 251
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 140/302 (46%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+ RY I Y G+ F+G Q Q + RTV L+ A +K P + + S RTDAGVHA
Sbjct: 1 MYRYKIIFAYDGSDFAGFQVQPHQRTVEKTLKIAVNKIAKNPDPAIEVYGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D+ P ++ P DS +RRA+N L D+MV V ++FHAR+
Sbjct: 61 LGQVAHFDI-------PFDL--PDDS--MRRALNSLLPL--DMMVKSAEHVDANFHARYS 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A + Y YR+ G E + F++ H LD+ MQ A K L+G HDF+S ASG Q
Sbjct: 108 AHRKLYRYRVSQG-EFVDPFKRRYTAHYKYPLDIERMQIAVKDLIGEHDFTSLVASGSQT 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +R ++ A D ++ + NG
Sbjct: 167 KSNVR---------IIYHAQIWRDEHDQEIIFEFEG-------NG--------------- 195
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+QVR++V +L +G + V+D+ R+L A+ A APA GL L V
Sbjct: 196 -------FLYNQVRIMVSLLLEIGNDQRPVNDIPRVLAARDRNQARGTAPASGLYLVEVN 248
Query: 354 YD 355
YD
Sbjct: 249 YD 250
>gi|158319577|ref|YP_001512084.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
gi|158139776|gb|ABW18088.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
Length = 248
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 132/296 (44%), Gaps = 54/296 (18%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+I +EY G+ +SG Q Q N T+ + +A K G+ V I S RTDAGVHA V
Sbjct: 5 MIEIEYDGSNYSGWQVQPNAITIQEEIMKALKKLEGKDVVIHGSGRTDAGVHAYGQVATF 64
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ER P E LP A+N L DI + D + VP DFHAR+ A + Y
Sbjct: 65 LMER---NIPVERLP--------LAMNSNLPK--DITIIDAKEVPMDFHARYSAIGKRYI 111
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y I ++ ++ ++H+ +LD M EA K+L+G HDF F ++G +RT+
Sbjct: 112 YHIYESRYRSAIL-RNYSYHINYKLDRSKMMEASKLLIGTHDFRGFMSNGSSVEDTVRTI 170
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
L F S G N++ +I
Sbjct: 171 KSLE---------FKS---------------------DGENIY----------MIIEGDG 190
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
FLY+ VR+I G L +G G + +E+ILK K + A AP GL L V Y L
Sbjct: 191 FLYNMVRIITGTLVQIGAGNKPLEQIEKILKTKDRSLAGHTAPPQGLFLDKVFYPL 246
>gi|421173688|ref|ZP_15631426.1| tRNA pseudouridine synthase A, partial [Pseudomonas aeruginosa
CI27]
gi|404535440|gb|EKA45137.1| tRNA pseudouridine synthase A, partial [Pseudomonas aeruginosa
CI27]
Length = 274
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 140/314 (44%), Gaps = 63/314 (20%)
Query: 52 STNKRIQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAG 110
S + R + +EY G+R+ G Q+Q +V LE A K +PV + + RTDA
Sbjct: 1 SAAAGVSRIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAA 60
Query: 111 VHAASNVCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
VHA+ V H D VER P + V+ N DI VT R +P+ F
Sbjct: 61 VHASGQVVHFDTAVER-----------PLKAWVMGTNAN----LPADISVTWARVMPAHF 105
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + P + ++ W+ LD+ M+EA +VLVG HDF+SFRA
Sbjct: 106 HARFSAMARRYRYAIYNDPIRPAHLAEEVTWN-HRPLDIGRMREAAQVLVGTHDFTSFRA 164
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQA SP++T+ + + E +G V IR
Sbjct: 165 VQCQAKSPVKTMHHVRLLE-----------------------------HGRLIVLDIRGN 195
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
+FL+H VR I GVL +G GE + + +L+ + A A GL
Sbjct: 196 -----------AFLHHMVRNIAGVLMTIGAGERPIEWAKEVLETRDRRAGGVTAHPYGLY 244
Query: 349 LGFVKY----DLPE 358
L V+Y +LPE
Sbjct: 245 LVRVEYPGEFELPE 258
>gi|385816919|ref|YP_005853309.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL1118]
gi|327182857|gb|AEA31304.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL1118]
Length = 264
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 144/316 (45%), Gaps = 57/316 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + + Y G F G Q Q + RTV G +E+A K G+ V + S RTDAGVHA
Sbjct: 2 LTRYKMTMSYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVG 61
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D PG+ +P + + A+N + + DI+ TD + V +FHAR+ +
Sbjct: 62 QVIHFDY-------PGKTIPANRMIL---ALNSMMPT--DIVFTDCQIVDENFHARYSIK 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ S ++ F++ H LD++ MQEA K L+G HDF+SF ASG Q
Sbjct: 110 GKWYRYRV-SLDHFVNPFKRFYTGHFQYHLDIKKMQEAAKDLLGTHDFTSFAASGGQIED 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ ++ IRK E+I
Sbjct: 169 KVRTIYYVN----------------------------------------IRKNEEENEII 188
Query: 296 AR--ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+ VR++V L +G V D++R++ AK A A GL L V
Sbjct: 189 FDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLKRVILAKDRQEVRQTAQASGLYLYHVF 248
Query: 354 YD-LPEDDQTDAAESL 368
YD +P+ + D +
Sbjct: 249 YDEIPQKYRQDQGSMI 264
>gi|261855761|ref|YP_003263044.1| tRNA pseudouridine synthase A [Halothiobacillus neapolitanus c2]
gi|261836230|gb|ACX95997.1| tRNA pseudouridine synthase A [Halothiobacillus neapolitanus c2]
Length = 271
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 134/301 (44%), Gaps = 60/301 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + +EY G+R+ G Q+Q +V LE A + PV + + RTDAGVHA+
Sbjct: 1 MARIALTLEYDGSRYHGWQRQSEVDSVQARLETALSRVADSPVDVVCAGRTDAGVHASHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D E I + + V L S DI + + V +FHARF A
Sbjct: 61 VVHFDTEAIRPERAWLL-----------GVTQSLPS--DISILSAQFVDPEFHARFSATA 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y Y IL+ S + R LD AM EA + L+G HDFSSFRA CQ+ SP
Sbjct: 108 RSYRYIILN-RMTRSALHRGRITWWRGPLDESAMHEAGQHLLGEHDFSSFRAKDCQSVSP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI- 295
+R+++ L++ HR E +
Sbjct: 167 VRSIESLNI-------------------------------------------HRQGEYVY 183
Query: 296 --ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A +FL+H VR IVG L VG GE + IL+AK +AA APA GL L V+
Sbjct: 184 MDITANAFLHHMVRNIVGTLLPVGAGERPADSLWDILQAKDRSAAGMTAPADGLYLVGVR 243
Query: 354 Y 354
Y
Sbjct: 244 Y 244
>gi|409386794|ref|ZP_11239147.1| tRNA pseudouridine synthase A [Lactococcus raffinolactis 4877]
gi|399206007|emb|CCK20062.1| tRNA pseudouridine synthase A [Lactococcus raffinolactis 4877]
Length = 253
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 140/311 (45%), Gaps = 61/311 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F+G Q Q N RTV LE K G PV + S RTD+GVHA +
Sbjct: 1 MTRYKARIAYDGTDFAGFQIQNNGRTVQEELERVLAKLNSGHPVKLHGSGRTDSGVHALA 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
+ H D+ + D+ +R A++ Q+ DI V + V DFH+RF+
Sbjct: 61 QIIHFDLPQ-----------ARDTEKLRFALD--TQTPDDIDVVALELVADDFHSRFKPH 107
Query: 176 ERTYFYRILS--GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+TY YR+ + PL+ + ++H + + M A ++LVG HDF+ F ASG
Sbjct: 108 SKTYQYRLTTSRANNPLT---RRFSYHFPKIVAFDDMVAAAQLLVGTHDFTGFTASGATV 164
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT I Q + V S D + NG
Sbjct: 165 EDKVRT-----------------ITQANVVRSGTDEILFIFSGNG--------------- 192
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY QVR +VG L +G G+ VS V IL A+ A P APA GL L V+
Sbjct: 193 -------FLYKQVRNMVGTLVKIGAGKWPVSRVSEILVAQNRDLAGPTAPAHGLCLMEVR 245
Query: 354 YDLPEDDQTDA 364
YD DD+ +A
Sbjct: 246 YD---DDEINA 253
>gi|453068393|ref|ZP_21971672.1| tRNA pseudouridine synthase TruA [Rhodococcus qingshengii BKS
20-40]
gi|452766043|gb|EME24294.1| tRNA pseudouridine synthase TruA [Rhodococcus qingshengii BKS
20-40]
Length = 294
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 145/305 (47%), Gaps = 59/305 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + + Y GT FSG +Q + RTV G +E+ + PV ++++ RTDAGVHA
Sbjct: 20 LVRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRHPVQLTVAGRTDAGVHATGQ 79
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVDV PGE+LP S +VRR + FL D+ V + VP DF ARF A
Sbjct: 80 VAHVDV-------PGELLPDDPSRLVRR-LARFLPK--DVRVKQISVVPGDFDARFSAMR 129
Query: 177 RTYFYRILS---GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
R Y YR+ + G EPL +D + + LDL AMQEA L+G H+F++F C+
Sbjct: 130 RYYEYRVTNAAFGVEPLRA--RDTVSY-PKPLDLGAMQEASNRLLGLHNFAAF----CKR 182
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
T+ EL + Q+ V ++ N
Sbjct: 183 REGATTVRELQRFD---------WTQEGTVFTAYVN------------------------ 209
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A +F + VR +VG + +VG G T V +L + +++ +APA GLSL V+
Sbjct: 210 ----ADAFCWSMVRSLVGAVLSVGEGRRTADWVAGLLDETSRSSSILVAPAHGLSL--VR 263
Query: 354 YDLPE 358
D P+
Sbjct: 264 VDYPD 268
>gi|430760516|ref|YP_007216373.1| tRNA pseudouridine synthase A [Thioalkalivibrio nitratireducens DSM
14787]
gi|430010140|gb|AGA32892.1| tRNA pseudouridine synthase A [Thioalkalivibrio nitratireducens DSM
14787]
Length = 283
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 129/302 (42%), Gaps = 62/302 (20%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
QR+ + VEY G+ F G Q+Q + +V +E+A G PV + + RTDAGVHA V
Sbjct: 9 QRWALGVEYDGSGFVGWQRQKDGASVQAAVEQALGFVAGHPVDLHCAGRTDAGVHATGQV 68
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD----IMVTDVRCVPSDFHARFR 173
H D++ VR N L + + + R V +FHARF
Sbjct: 69 IHF-----------------DTTAVRDERNWLLGANAGLPEPVALLWARLVSRNFHARFS 111
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
AQ R Y Y I + ++ + AW LD M EA + LVG HDFSS RA+ CQA
Sbjct: 112 AQGRRYRYVIANQSVRPALQARGVAW-WRYPLDAERMHEAAQALVGTHDFSSLRAAACQA 170
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S I+T+ + V ++ R
Sbjct: 171 QSAIKTIHSIRV----------------------------------------HRQGRHVV 190
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ A +FL+H VR I GVL +G G V I++A+ A+ APA GL L V
Sbjct: 191 LDVHANAFLHHMVRNIAGVLIPIGQGRREADWVHEIMQARDRRASGMTAPAGGLYLVGVD 250
Query: 354 YD 355
YD
Sbjct: 251 YD 252
>gi|226184487|dbj|BAH32591.1| tRNA pseudouridine synthase TruA [Rhodococcus erythropolis PR4]
Length = 294
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 145/305 (47%), Gaps = 59/305 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + + Y GT FSG +Q + RTV G +E+ + QPV ++++ RTDAGVHA
Sbjct: 20 LVRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRQPVQLTVAGRTDAGVHATGQ 79
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVDV PGE+LP S +VRR + FL D+ V + VP DF ARF A
Sbjct: 80 VAHVDV-------PGELLPDDPSRLVRR-LARFLPK--DVRVKQISVVPGDFDARFSAIR 129
Query: 177 RTYFYRILS---GPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
R Y YR+ + G EPL +D + + LDL AMQEA L+G H+F++F C+
Sbjct: 130 RYYEYRVTNAAFGVEPLRA--RDTVSY-PKPLDLAAMQEASNRLLGLHNFAAF----CKR 182
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
T+ EL + Q+ V ++ N
Sbjct: 183 REGATTVRELQRFDWA---------QEGTVFTAYVN------------------------ 209
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A +F + VR +VG + +VG G T V +L +++ +APA GLSL V+
Sbjct: 210 ----ADAFCWSMVRSLVGAVLSVGEGRRTADWVAGLLDETLRSSSILVAPAHGLSL--VR 263
Query: 354 YDLPE 358
D P+
Sbjct: 264 VDYPD 268
>gi|208779289|ref|ZP_03246635.1| tRNA pseudouridine synthase A [Francisella novicida FTG]
gi|208745089|gb|EDZ91387.1| tRNA pseudouridine synthase A [Francisella novicida FTG]
Length = 258
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 142/304 (46%), Gaps = 60/304 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + +V LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VCHV--DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
+ + D ER S +R VN L DI + V+ V +DF++RF A
Sbjct: 61 IVNFYSDAER-------------PLSAWQRGVNALLPQ--DIKILAVQQVDNDFNSRFTA 105
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
RTY Y I + +F + W ELD+ M +AC+ L+G DFSSFR+S CQ+N
Sbjct: 106 INRTYNYIIYNSATSSPIFAEHCLWE-NRELDIYKMNQACEYLLGEQDFSSFRSSQCQSN 164
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + + I Q S ++ +EV
Sbjct: 165 TPFRNIQKAEF-----------IKQGSFIV---------------------------FEV 186
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+ A FL+H +R +VG L VG G + ++ +L+AK T A+ A A GL FV
Sbjct: 187 VGNA--FLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY--FVGV 242
Query: 355 DLPE 358
+ PE
Sbjct: 243 EYPE 246
>gi|253681679|ref|ZP_04862476.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873]
gi|416351428|ref|ZP_11681135.1| tRNA pseudouridine synthase A [Clostridium botulinum C str.
Stockholm]
gi|253561391|gb|EES90843.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873]
gi|338196000|gb|EGO88223.1| tRNA pseudouridine synthase A [Clostridium botulinum C str.
Stockholm]
Length = 245
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 136/294 (46%), Gaps = 55/294 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+ ++Y GTR+ G QK + T+ +E ++ +G+ VS+ S RTDAGVHA + +
Sbjct: 6 LTIQYDGTRYKGWQKLGDADNTIQYKIESVLNELLGEEVSLIASGRTDAGVHANMQIANF 65
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ ++++ + Q DI++T++ +FH+R+ +++ Y
Sbjct: 66 KTNS----------NVTNDTILKHCYKYLPQ---DIVITNISDASENFHSRYNVKKKIYT 112
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y I + P VF + ++H+ E LD++ M+EA K+ +G HDF SF
Sbjct: 113 YNIYNNPVH-DVFTRKYSYHIKETLDIKKMKEASKLFIGEHDFKSF-------------- 157
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
TAL S + SI +KK + E+I
Sbjct: 158 ----------TALKSKKKSTVKTIDSIT----------------FKKKDNNIEIIFTGNG 191
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY +R++VG L VG G+LT+ D++ I+ K + A APA GL L VKY
Sbjct: 192 FLYKMIRILVGSLINVGLGKLTIEDLQNIMNKKDRSIAPETAPAHGLILTEVKY 245
>gi|125975420|ref|YP_001039330.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405]
gi|256005284|ref|ZP_05430250.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360]
gi|281419381|ref|ZP_06250396.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20]
gi|385777865|ref|YP_005687030.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313]
gi|419723270|ref|ZP_14250403.1| tRNA pseudouridine synthase A [Clostridium thermocellum AD2]
gi|419727085|ref|ZP_14254091.1| tRNA pseudouridine synthase A [Clostridium thermocellum YS]
gi|166991160|sp|A3DJK8.1|TRUA_CLOTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|125715645|gb|ABN54137.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405]
gi|255990720|gb|EEU00836.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360]
gi|281407001|gb|EFB37264.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20]
gi|316939545|gb|ADU73579.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313]
gi|380769490|gb|EIC03404.1| tRNA pseudouridine synthase A [Clostridium thermocellum YS]
gi|380780735|gb|EIC10400.1| tRNA pseudouridine synthase A [Clostridium thermocellum AD2]
Length = 244
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 139/293 (47%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT + G QKQ N +TV +E A G+ V + +SRTD GVHA V +
Sbjct: 6 LIIEYDGTNYHGWQKQKNAKTVQDTIERAIKGLTGEKVDLIGASRTDFGVHALGQVANFI 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ PG+ A+N L DI++ + + V DFHAR++A+ + Y Y
Sbjct: 66 T---NSGIPGDRFSY--------ALNRMLPD--DIVIKESQEVDMDFHARYKAKGKRYRY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P S + R +HV+ +LD +MQ A +G HDFS+FR+SG A + +RT+
Sbjct: 113 LIYNSQFP-SALLRHRTYHVSHKLDFESMQRAASYFLGTHDFSAFRSSGSSAKTSVRTIT 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
++ S+ ++ ++ K + G F
Sbjct: 172 DV------------SLEREDKIV-------KFEIAGDG---------------------F 191
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+IVG L VG G++ ++ +I++++ A APA GL L V Y
Sbjct: 192 LYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRTAPAEGLYLVEVYY 244
>gi|340397983|ref|YP_004727008.1| tRNA pseudouridine synthase A [Streptococcus salivarius CCHSS3]
gi|338741976|emb|CCB92481.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Streptococcus salivarius
CCHSS3]
Length = 248
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 133/298 (44%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q N R++ LE+ + G PV++ + RTDAGVHA V
Sbjct: 3 RYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + +R P ++ D+ Q DI V + V +FHAR+ +
Sbjct: 63 IHFDLPQ--ERDPEKLRFGLDT-----------QCPDDIDVVSIELVSEEFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA K LVG HDF+ F ASG +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKE 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQASVS--------------------------------------IDEKTGFYIFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS V+ +L+++ A P A GL L ++Y+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTAAGNGLYLKEIRYE 248
>gi|404493538|ref|YP_006717644.1| tRNA pseudouridine synthase A [Pelobacter carbinolicus DSM 2380]
gi|123756611|sp|Q3A3B5.1|TRUA_PELCD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|77545580|gb|ABA89142.1| tRNA pseudouridines 38,39,40 synthase [Pelobacter carbinolicus DSM
2380]
Length = 252
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 136/301 (45%), Gaps = 61/301 (20%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT + G Q+Q N +V V+EEA K G P S+ S RTDAGVHA V H
Sbjct: 6 LIIEYDGTPYVGWQRQPNGLSVQQVVEEALAKVCGGPHSLVSSGRTDAGVHARGMVAHF- 64
Query: 122 VERISKRKPGEVLP-PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
V P P + R VN FL ++ I V D +P DFHAR+ A + Y
Sbjct: 65 -----------VTPQPLPMAAYREGVNRFLPAQ--IAVRDAALMPDDFHARYSAVGKWYR 111
Query: 181 YRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y I P PL+ +WHV LDL+AM++A ++LVG HDF++FRASGC A + +R
Sbjct: 112 YSIYRSPVRSPLAC---RFSWHVRTVLDLQAMRQAARLLVGRHDFAAFRASGCAARTTVR 168
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
+FS D+ +D R
Sbjct: 169 E-------------VFSVDIVDAEEWVYVD---------------------------VRG 188
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPE 358
FL + VR++VG L VG G +V +L + APA GL L V Y P+
Sbjct: 189 SGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQSGITAPAQGLCLMEVAYA-PQ 247
Query: 359 D 359
D
Sbjct: 248 D 248
>gi|347821576|ref|ZP_08875010.1| tRNA pseudouridine synthase A [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 267
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 135/299 (45%), Gaps = 51/299 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + + Y G +SG Q Q + TV LE A H+F QPV + RTDAGVHA V
Sbjct: 2 RMALGLSYNGQGYSGWQSQPSGNTVQDRLEAALHRFATQPVGTLCAGRTDAGVHALMQVV 61
Query: 119 HVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D +ER P S V R N FL DI V + V FHAR A
Sbjct: 62 HFDTPLER-----------PAVSWV--RGTNRFLPP--DIAVQWAQPVADGFHARASAVA 106
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y +L P SV W V + LD AM++A + L+G HDFSSFRA+ CQA SP
Sbjct: 107 RRYAYVLLQSPVRPSVDAARVGW-VFQALDHAAMRQAAEQLLGEHDFSSFRAAACQAPSP 165
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL + + G + G +E
Sbjct: 166 VKTLRRIDIVR-----------------------------RGPGDAHGPCYWRFEFE--- 193
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A +FL+H VR I+G L AVG G + ++++L+AK+ AA+P GL YD
Sbjct: 194 -ADAFLHHMVRNIMGCLIAVGQGRQPPAWMQQVLRAKSRAAAAPTFAPDGLYFLGPLYD 251
>gi|456358366|dbj|BAM92811.1| tRNA pseudouridine synthase A [Agromonas oligotrophica S58]
Length = 245
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 133/298 (44%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE A G P + S RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQATLPSVQGALEAAVQATCGVPTRVHGSGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+E+ E P +R A+N L+ + V VP F ARF A++
Sbjct: 61 VAHCDIEK-------EFRP----DKLRDALNAHLRPN-PVAVLAAEIVPETFEARFSARK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P E R W V + LD AM A + L+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRIVN-RRPNLALEVGRVWRVPQRLDSDAMHAAAQRLIGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V G V ++
Sbjct: 168 EKTLDQLDVVR------------------------------DGDGV----------TILT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARS+L+ QVR +VG L VG G + D+ L A+ A +AP GL L V Y
Sbjct: 188 SARSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARNRAACGVVAPPEGLYLVKVDY 245
>gi|27383218|ref|NP_774747.1| tRNA pseudouridine synthase A [Bradyrhizobium japonicum USDA 110]
gi|27356392|dbj|BAC53372.1| tRNA pseudouridine synthase I [Bradyrhizobium japonicum USDA 110]
Length = 252
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 133/298 (44%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE A G + + + RTDAGVHA
Sbjct: 8 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 67
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+E+ PP R +N L+ I V + VP F ARF A +
Sbjct: 68 VAHVDIEK--------QFPP---GRFRDGLNAHLRPH-PIAVLEAEIVPDTFEARFSAVK 115
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L++ + AW V LD AM A + L+G HDF++FR + CQA SP
Sbjct: 116 RHYRYRIVNTRANLAL-DIGHAWRVPRRLDSDAMHAAARRLLGKHDFTTFRDTECQAKSP 174
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V + R +I
Sbjct: 175 EKTLDQLDVL----------------------------------------RDGREITIIT 194
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G T D+ L A+ A +AP GL L V Y
Sbjct: 195 SARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLYLVKVDY 252
>gi|315037561|ref|YP_004031129.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1112]
gi|325956034|ref|YP_004286644.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus 30SC]
gi|312275694|gb|ADQ58334.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1112]
gi|325332599|gb|ADZ06507.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus 30SC]
Length = 264
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 143/313 (45%), Gaps = 57/313 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + + Y G F G Q Q + RTV G +E+A K G+ V + S RTDAGVHA
Sbjct: 2 LTRYKMTMSYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVG 61
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D PG+ +P + + A+N + + DI+ TD + V +FHAR+ +
Sbjct: 62 QVIHFDY-------PGKTIPANRMIL---ALNSMMPT--DIVFTDCQIVDENFHARYSIK 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ S ++ F++ H LD++ MQEA K L+G HDF+SF ASG Q
Sbjct: 110 GKWYRYRV-SLDHFVNPFKRFYTGHFQYHLDIKKMQEAAKDLLGTHDFTSFAASGGQIED 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ ++ IRK E+I
Sbjct: 169 KVRTIYYVN----------------------------------------IRKNEEENEII 188
Query: 296 AR--ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+ VR++V L +G V D++R++ AK A A GL L V
Sbjct: 189 FDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLKRVILAKDRQEVRQTAQASGLYLYHVF 248
Query: 354 YD-LPEDDQTDAA 365
YD +P+ + D
Sbjct: 249 YDEIPQKYRQDQG 261
>gi|335998536|ref|ZP_08564447.1| tRNA pseudouridine synthase A [Lactobacillus ruminis SPM0211]
gi|347524814|ref|YP_004831562.1| tRNA pseudouridine synthase [Lactobacillus ruminis ATCC 27782]
gi|335348391|gb|EGM49897.1| tRNA pseudouridine synthase A [Lactobacillus ruminis SPM0211]
gi|345283773|gb|AEN77626.1| tRNA pseudouridine synthase [Lactobacillus ruminis ATCC 27782]
Length = 250
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 134/302 (44%), Gaps = 58/302 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP--VSISLSSRTDAGVHAAS 115
+RY I + Y GT F+G Q Q N RTV VLE A +K ++I S RTDAGVHA
Sbjct: 3 RRYKITLAYDGTNFAGFQVQPNQRTVQSVLEAAVNKMSKNSDYITIYGSGRTDAGVHALG 62
Query: 116 NVCHVDVERISKRKPGEVLPPHD--SSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D PHD + + + +N L + +++ ++ VP+DFHARF
Sbjct: 63 QVVHFDF-------------PHDIPAEGMLKGLNSMLPLDCEVVGCEI--VPNDFHARFT 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+ Y YR+ G + F++ H LD+ ++EA LVG HDFSSF ASG Q
Sbjct: 108 THGKRYMYRVSRG-RFTNPFKRFYTGHYKYPLDIEKIKEAMPDLVGTHDFSSFVASGSQT 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+ +RT+ E V E D + N
Sbjct: 167 KNHVRTIYEATVRE--------DKENDEIIFEFCGN------------------------ 194
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+QVR++V L +G G+ V D R+ + K APA GL L V
Sbjct: 195 ------GFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRNECRETAPASGLYLKEVY 248
Query: 354 YD 355
YD
Sbjct: 249 YD 250
>gi|323141117|ref|ZP_08076020.1| tRNA pseudouridine synthase A [Phascolarctobacterium succinatutens
YIT 12067]
gi|322414383|gb|EFY05199.1| tRNA pseudouridine synthase A [Phascolarctobacterium succinatutens
YIT 12067]
Length = 250
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 137/296 (46%), Gaps = 60/296 (20%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA-ASNVCHV 120
+ V Y G+ + G QKQ N +TV VLEEA G+ V + S RTD GVHA A V
Sbjct: 6 LVVAYDGSAYHGFQKQKNVQTVQNVLEEALTMLCGEKVVTAGSGRTDTGVHALAQTVTFT 65
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
RI +++VR A + + DI+V +P FHARF A+ +TY
Sbjct: 66 TNGRIPC-----------ANLVRAAASLLPE---DIVVVSAEEMPEGFHARFSARWKTYH 111
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y++L E ++ F AW + ++L+++AM EA ++L+G HDFS+FR+SG SPI+T
Sbjct: 112 YKLLVN-EHVNPFMVRYAWQLRQQLEVKAMNEAAELLLGTHDFSAFRSSGSVDTSPIKT- 169
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR--A 298
+F + + + E++ R
Sbjct: 170 -----------------------------------------IFAAKWQQQGEEILFRISG 188
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLYH VR IV + VG G+ TV D L A+ + APA GL L V Y
Sbjct: 189 DGFLYHMVRNIVWSMVQVGMGKRTVQDFAAELTAQRCEFLNEPAPAQGLYLAEVGY 244
>gi|398999852|ref|ZP_10702585.1| pseudouridylate synthase I [Pseudomonas sp. GM18]
gi|398130906|gb|EJM20235.1| pseudouridylate synthase I [Pseudomonas sp. GM18]
Length = 284
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 142/316 (44%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV +LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVDTVQELLEKALSKVADSPVSLHCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD I V+ + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWVMGANINLPHD-----------------ISVSWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + LVG HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEVTWNHRPLDVERMSEAAQYLVGTHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L+++ + A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRVRRSGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 253 LYLVQVEYRDEFELPE 268
>gi|34498219|ref|NP_902434.1| tRNA pseudouridine synthase A [Chromobacterium violaceum ATCC
12472]
gi|42559750|sp|Q7NUD6.1|TRUA_CHRVO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|34104072|gb|AAQ60432.1| pseudouridylate synthase A [Chromobacterium violaceum ATCC 12472]
Length = 262
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 134/298 (44%), Gaps = 55/298 (18%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAASN 116
R + +EY G F+G Q Q + TV L A + G + V + RTDAGVHAA
Sbjct: 1 MRIALGIEYDGRAFAGWQSQPHGNTVQDRLNRALGQIAGNRDVVTHAAGRTDAGVHAAMQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D + + R P ++ V R VN L E + V R V DFHARF A
Sbjct: 61 VVHFDTD--ASR-------PLNAWV--RGVNALLPPE--VAVVWAREVGDDFHARFSAFS 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R+Y Y +L+ P + W+ + LD+ AM+EA L+G HDFSSFRAS CQA SP
Sbjct: 108 RSYSYFLLTHPVRSCLLAGKVGWY-HQALDVAAMREAAAGLLGRHDFSSFRASECQAKSP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++ L L + E F
Sbjct: 167 VKDLQRLDIIEADGLLRFD----------------------------------------L 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A +FL+H VR IVG L VG G L+ +D++ +L A+ T+A P GL L V Y
Sbjct: 187 HADAFLHHMVRNIVGALLYVGKGALSPADMQSLLAARDRTSAPPTFMPDGLYLTGVGY 244
>gi|304315974|ref|YP_003851119.1| tRNA pseudouridine synthase A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433654133|ref|YP_007297841.1| pseudouridylate synthase I [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|302777476|gb|ADL68035.1| tRNA pseudouridine synthase A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433292322|gb|AGB18144.1| pseudouridylate synthase I [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 248
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 143/299 (47%), Gaps = 54/299 (18%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+++ ++ +EY GT + G Q Q N T+ + +A K + V + SSRTDAGVHA
Sbjct: 4 KMRNIVLVIEYDGTNYHGWQIQKNVVTIQETITKAIKKITNEDVDLIGSSRTDAGVHA-- 61
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
+ +++ K +P +S + A+N L + DI++ D DFH+R+ A+
Sbjct: 62 ------LHQVANFKTCTNIP---TSKIPNALNSVLPA--DIVIKDAFEADMDFHSRYSAK 110
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y Y I+ S K+ +WH+++ LD+ M+E+ K L G HDFS+F+ASG S
Sbjct: 111 GKRYKY-IIYNRRFSSPILKNYSWHISKSLDVEKMRESLKYLEGTHDFSAFKASGSSVKS 169
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RT+ + + + G NV +E+
Sbjct: 170 PVRTVRD------------------------------ISLKKNGFNV--------EFEI- 190
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A FLY+ VR+IVG + VG G++ DV+ IL +K A AP GL L + Y
Sbjct: 191 -EADGFLYNMVRIIVGTIVDVGLGKINPIDVKEILDSKNRCMAGKTAPPQGLFLTKIYY 248
>gi|91776053|ref|YP_545809.1| tRNA pseudouridine synthase A [Methylobacillus flagellatus KT]
gi|123254255|sp|Q1H0L9.1|TRUA_METFK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91710040|gb|ABE49968.1| tRNA pseudouridine synthase A [Methylobacillus flagellatus KT]
Length = 261
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 129/297 (43%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY G F G Q Q N V LE A + G V +S + RTD GVHA S V
Sbjct: 2 RLALGIEYDGAGFCGWQSQPNRLAVQDALESALSQLAGHQVRVSAAGRTDTGVHALSQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D E + + + R VN L + V + V FHARF A +R+
Sbjct: 62 HFDTEAVRSQ-----------TAWVRGVNTKLPR--GVRVLWAKEVDPRFHARFDAYQRS 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +++ P +V W + LDL+AMQEA L+G HDFS+FRA+ CQA SP++
Sbjct: 109 YQYWLINQPVAPAVMAGKAGW-FHQPLDLQAMQEAMAYLLGQHDFSAFRAAECQAKSPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+ VS S+ +F A
Sbjct: 168 TMHHASVSAFGSSMIFDFC----------------------------------------A 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+FL+HQVR +VG L +G G+ + +L+ + + P GL L V YD
Sbjct: 188 SAFLHHQVRNMVGALVYIGKGKYPPVFIAELLEKRDRRCSPPTFSPDGLYLTGVGYD 244
>gi|398978114|ref|ZP_10687570.1| pseudouridylate synthase I [Pseudomonas sp. GM25]
gi|398137441|gb|EJM26500.1| pseudouridylate synthase I [Pseudomonas sp. GM25]
Length = 284
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 139/312 (44%), Gaps = 73/312 (23%)
Query: 59 RYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+SG Q+Q TV LE+A K P+S+ + RTDAGVHA V
Sbjct: 18 RVALGVEYKGSRYSGWQRQSTGVPTVQETLEKALSKVADSPISLQCAGRTDAGVHACGQV 77
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + D S+ + + DI V+ + +P+ FHARF+A R
Sbjct: 78 VHFDTQV-------------DRSLKAWVMGANINLPHDISVSWAKVMPAHFHARFKAIAR 124
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSFRASG 230
Y Y I + ++ R H+ EE LD+ M EA + L+G HDFS+FRA
Sbjct: 125 RYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLIGTHDFSAFRAGQ 176
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA SPI+ + L V+ +G V I
Sbjct: 177 CQAKSPIKKMHHLRVTR-----------------------------HGKMIVLDI----- 202
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
RA +FL+H VR I GVL +G GE V ++ +L+++ + A GL L
Sbjct: 203 ------RANAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRERRSGGVTAHPFGLYLV 256
Query: 351 FVKYD----LPE 358
V+Y LPE
Sbjct: 257 QVEYHDEFPLPE 268
>gi|118594739|ref|ZP_01552086.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181]
gi|118440517|gb|EAV47144.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181]
Length = 264
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 128/297 (43%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R +V Y G FSG QKQ + +T+ G++E A + V S RTD+GVHA +
Sbjct: 2 RIACSVSYNGYGFSGWQKQPDVKTIQGLIESALTEIAKDTVITHASGRTDSGVHALGQII 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D +K +P + + VN FL S I V + + FHAR ER
Sbjct: 62 HFDT---TKNRP--------LTAWVKGVNAFLPSS--IKVRWAKNISESFHARHSVLERE 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y ++ ++F W +LD + ACK G HDFSSFR+S CQA SP+R
Sbjct: 109 YQYLLIKDTNNSAIFHATAGW-TYFDLDDYNLMAACKCFEGTHDFSSFRSSECQAKSPVR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+++ + +T LF+ RA
Sbjct: 168 TINQFRCEQFGNTYLFT----------------------------------------IRA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FL+HQ+R ++ + V E +V ++ +L K T A P GL L +KYD
Sbjct: 188 NGFLHHQIRNMIAAVIHVAKNEDSVGFIDDLLSKKDRTLAPPTFMPNGLYLSNIKYD 244
>gi|418017001|ref|ZP_12656560.1| tRNA pseudouridine synthase A [Streptococcus salivarius M18]
gi|345527694|gb|EGX31002.1| tRNA pseudouridine synthase A [Streptococcus salivarius M18]
Length = 248
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 133/298 (44%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q N R++ LE+ + G PV++ + RTDAGVHA V
Sbjct: 3 RYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + +R P ++ D+ Q DI V + V +FHAR+ +
Sbjct: 63 IHFDLPQ--ERDPEKLRFGLDT-----------QCPDDIDVVSIELVSEEFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQASVS--------------------------------------IDEKTGFYIFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G + VS V+ +L+++ A P A GL L ++Y+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNDRMPVSQVKTVLESRDRNLAGPTAAGNGLYLKEIRYE 248
>gi|331007056|ref|ZP_08330287.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC1989]
gi|330419141|gb|EGG93576.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC1989]
Length = 286
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 135/303 (44%), Gaps = 61/303 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+QR + +EY G F G Q Q + +TV LE A +P+ + + RTDAGVHA +
Sbjct: 24 MQRVALGIEYAGHVFHGFQSQPHDEKTVQSALENALSLVANEPIKLVCAGRTDAGVHATN 83
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
+ H D ++KRK D++ +R A DV C DFH+RF A+
Sbjct: 84 QIVHFDT--LAKRK--------DTAWLRGANAKLPDGVAIRWAQDVSC---DFHSRFSAK 130
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
RTY Y I + ++ + W LD+ AM EA + LVG HDF++FRAS CQAN+
Sbjct: 131 HRTYRYVIYNSRTHSALLKNFVTWD-RRSLDIDAMAEASQALVGRHDFNAFRASQCQANN 189
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
IR + + V HR + I
Sbjct: 190 AIRDMHYIKV-------------------------------------------HRQNDFI 206
Query: 296 ---ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
+A +FLYH VR IVGVL + GE VS + +L++K A GL L V
Sbjct: 207 VIEVQATAFLYHMVRNIVGVLSTIAAGEKPVSWAKEVLESKDRRCGGITASPDGLYLVAV 266
Query: 353 KYD 355
+YD
Sbjct: 267 EYD 269
>gi|398994016|ref|ZP_10696945.1| pseudouridylate synthase I [Pseudomonas sp. GM21]
gi|398133346|gb|EJM22553.1| pseudouridylate synthase I [Pseudomonas sp. GM21]
Length = 284
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 141/316 (44%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLLCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + LVG HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGTHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +GTGE V ++ +L+++ + A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGTGERPVEWMKEVLESRIRRSGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y LPE
Sbjct: 253 LYLVQVEYRDEFQLPE 268
>gi|398384437|ref|ZP_10542467.1| pseudouridylate synthase I [Sphingobium sp. AP49]
gi|397722596|gb|EJK83132.1| pseudouridylate synthase I [Sphingobium sp. AP49]
Length = 252
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 135/299 (45%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ VE+ G F G Q+Q + +V +E+A H G+ + + RTDAGVH +
Sbjct: 1 MARFAFTVEFDGRPFMGWQRQAHGPSVQQAIEDAIHAVTGERAILHAAGRTDAGVHGLAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H DVE+ P + A+N L+ + + V D+HARF
Sbjct: 61 RAHADVEK-----------PLTPFRLMEAINAKLRPH-PVAILACEEVAPDWHARFSCLG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + PL++ E AW V + LD AM +A ++LVG HDF++FR+ CQA SP
Sbjct: 109 RAYIYRIANRRAPLTL-ESGLAWRVIQPLDADAMHDAAQILVGHHDFTTFRSVHCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+++L L V +R+ R + A
Sbjct: 168 LKSLAMLDV---------------------------------------VREGDR-IAIRA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG L VG G D+ L+A+ AP GL FV+ D
Sbjct: 188 EARSFLHHQVRSMVGCLAMVGMGRWNADDLRDALEARDRARLGLNAPPDGLY--FVRAD 244
>gi|424071386|ref|ZP_17808812.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407998995|gb|EKG39389.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 284
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 135/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T R +P+ FHARF+
Sbjct: 78 VHFDTQAERTLKAWVMGANINLPHDVSV-----------------TWARVMPATFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 180 KSPVKQLHHLRVT-----------------------------------------RHGKMI 198
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE V +L+++ A GL L V
Sbjct: 199 VIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYLVGV 258
Query: 353 KYD----LPE 358
+Y LPE
Sbjct: 259 EYHDEFPLPE 268
>gi|397905071|ref|ZP_10505943.1| tRNA pseudouridine synthase A [Caloramator australicus RC3]
gi|397161866|emb|CCJ33277.1| tRNA pseudouridine synthase A [Caloramator australicus RC3]
Length = 244
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 134/293 (45%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
I +EY GTR+ G Q+Q N ++ +E+A K G+ I SSRTDAGVHA V +
Sbjct: 6 IVIEYDGTRYCGWQRQKNGVSIQETIEKAIEKVTGEKTEIISSSRTDAGVHAKGQVANFL 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+PP + A+N FL DI++ + VP DFH+R+ ++ + Y Y
Sbjct: 66 TS--------STVPPEK---ICYAINSFLPD--DIVILSSQEVPLDFHSRYSSKGKKYSY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
IL+ P S K+ + H+ EL++ M A K +G HDFS+F+++G +RT+
Sbjct: 113 TILNRKIP-SALLKNYSAHIPYELNIEDMIRASKYFLGEHDFSAFKSTGSSVKGNVRTIK 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
L + +D ++ ++ A F
Sbjct: 172 RLELI------------KDEDII----------------------------KMFIEANGF 191
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+I G L VG G + D+ I+ ++ A P APA GL L V Y
Sbjct: 192 LYNMVRIIAGTLIEVGKGRIKPDDIPFIIDSRDRKKAGPTAPAQGLCLEKVYY 244
>gi|254447334|ref|ZP_05060801.1| tRNA pseudouridine synthase A [gamma proteobacterium HTCC5015]
gi|198263473|gb|EDY87751.1| tRNA pseudouridine synthase A [gamma proteobacterium HTCC5015]
Length = 261
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 127/301 (42%), Gaps = 64/301 (21%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ VEY GT + G Q+Q N +V VLEE+ K V + + RTD GVHA V H +
Sbjct: 5 LGVEYDGTAYHGWQRQNNGISVQQVLEESLSKVANHGVQVQCAGRTDTGVHATQQVVHFE 64
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG----DIMVTDVRCVPSDFHARFRAQER 177
SS R N L + D+ V + V DFHARF AQ R
Sbjct: 65 -----------------SSAQRSIRNWILGANANLPFDVSVRWAKQVSDDFHARFSAQGR 107
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y ILS +++ + W + LDL MQ+A + LVG HDFSS+RA CQA SP+
Sbjct: 108 RYRYLILSRYSRSALWGRRATW-THKPLDLEVMQQAAQHLVGRHDFSSYRAVHCQAKSPV 166
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL L V ++ ++ D
Sbjct: 167 RTLHSLEVGR-AGDFIYIDVHGD------------------------------------- 188
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
FL+H VR I GVL A+G GE +L+ + AP GL FV + P
Sbjct: 189 --GFLHHMVRNIAGVLMAIGAGEAVPDWSREVLEHRDRRLGGVTAPPWGLY--FVHAEYP 244
Query: 358 E 358
E
Sbjct: 245 E 245
>gi|408373713|ref|ZP_11171407.1| tRNA pseudouridine synthase A [Alcanivorax hongdengensis A-11-3]
gi|407766417|gb|EKF74860.1| tRNA pseudouridine synthase A [Alcanivorax hongdengensis A-11-3]
Length = 280
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 135/314 (42%), Gaps = 71/314 (22%)
Query: 57 IQRYLIAVEYIGTRFSGSQ-KQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ R + +EY G+ F G Q +Q RTV LE A + PV++ + RTDAGVH
Sbjct: 14 MARIALGIEYDGSAFRGWQTQQPGVRTVQETLEAALSRVANHPVNVVCAGRTDAGVHGTG 73
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQS-----EGDIMVTDVRCVPSDFHA 170
V H D S RA+ ++ GD+ V VP DFHA
Sbjct: 74 QVVHFD------------------SPAPRAMRSWIMGANTNLPGDVSVRWATPVPEDFHA 115
Query: 171 RFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASG 230
RF A R Y Y I + P P ++F W+ LD+ AM+EA +L G HDF+S+R+
Sbjct: 116 RFSAVSRRYRYVIYNHPRPPALFRDQVTWNY-RPLDVDAMREAAFMLEGEHDFTSYRSVH 174
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA SPI+TL L + + H
Sbjct: 175 CQAKSPIKTLHSLRLYQ-----------------------------------------HG 193
Query: 291 SYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
V+ A A +FL H VR I GVL A+G G+ ++L A+ AP GL L
Sbjct: 194 QILVLEAHANAFLMHMVRNIAGVLMAIGAGKKPPQWAGQVLDARDRRQGGVTAPPFGLYL 253
Query: 350 GFVKY----DLPED 359
++Y +LP++
Sbjct: 254 VNIEYPPQFELPDE 267
>gi|291548427|emb|CBL21535.1| pseudouridylate synthase I [Ruminococcus sp. SR1/5]
Length = 245
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 139/298 (46%), Gaps = 54/298 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R + V Y GT++SG Q Q N T+ GVL + + +G+ + +SRTDAGVHA N
Sbjct: 1 MKRVGLVVAYDGTKYSGWQTQPNGITIQGVLNDTLSELLGEKIETIGASRTDAGVHALGN 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D E R PGE A+N L DI + V DFH R+ E
Sbjct: 61 VAVFDTE---SRIPGEKF--------SYALNQRLPE--DIRIQLSEEVEPDFHPRYCDSE 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+TY YRIL+ P+ E+ ++ +LD+ M+EA L+G HDF+SF SG Q +
Sbjct: 108 KTYEYRILNRKFPVPT-ERLYSYFYHYKLDVDKMKEATSYLIGRHDFASFCGSGAQVKTT 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IRT+ + V +D +++ +
Sbjct: 167 IRTVTSMDVW------------RDGDMVT----------------------------IRI 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+I G L +G G+ +++ILKA AA P APA GL+L +++
Sbjct: 187 SGTGFLYNMVRIISGTLIEIGNGQYPPERMDKILKACDRGAAGPTAPAQGLTLMGIEF 244
>gi|262198313|ref|YP_003269522.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365]
gi|262081660|gb|ACY17629.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365]
Length = 264
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 141/304 (46%), Gaps = 56/304 (18%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAG 110
MST + I+ + +EY GT SG Q+Q N TV +E+A +G+ V I +SRTDAG
Sbjct: 1 MSTERTIR---LVLEYDGTGLSGWQRQNNAPTVQAHVEDALSSMLGRAVQIVGASRTDAG 57
Query: 111 VHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHA 170
VHA V H + G +PPH R +N L I V V +DFHA
Sbjct: 58 VHALGQVAHF--------RTGSSIPPHG---FLRGLNGKLPPA--IAVVACAEVRADFHA 104
Query: 171 RFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASG 230
RF ++ + Y Y + + + ++RAWH LDL AM+ A + ++G DF +FRASG
Sbjct: 105 RFDSRGKHYRYALHTRAARAPLL-RERAWHCPRPLDLAAMERAAQAMLGERDFQAFRASG 163
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
C A + R +D + +S + L ID V+G
Sbjct: 164 CTAKTSRRRVDRVALSRPAAD------------LIHID-------------VYG------ 192
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
+FL + VR++ G L VG G L ++ IL ++ T A APA GL+L
Sbjct: 193 --------NAFLRNMVRIMAGTLVDVGLGRLAADEISSILDSRDRTCAGRTAPAHGLTLV 244
Query: 351 FVKY 354
V Y
Sbjct: 245 EVFY 248
>gi|288941328|ref|YP_003443568.1| tRNA pseudouridine synthase A [Allochromatium vinosum DSM 180]
gi|288896700|gb|ADC62536.1| tRNA pseudouridine synthase A [Allochromatium vinosum DSM 180]
Length = 261
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 139/322 (43%), Gaps = 69/322 (21%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ VEY GT F G Q Q RTV LE A + PV + + RTDAGVHA V H +
Sbjct: 1 MGVEYDGTHFHGWQTQSGVRTVQSELEAAVSRVANHPVIVHCAGRTDAGVHALEQVVHFE 60
Query: 122 V-----ERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
ER LPP D+ V V FHARF AQ
Sbjct: 61 TTATRSERSWVLGANVNLPP------------------DVGVRWAHPVDDGFHARFSAQA 102
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y+IL+ S ++DRA V E LDL M+ A LVG HDFSSFRA CQA SP
Sbjct: 103 RHYRYQILA-RRTRSPIQRDRAVWVHEALDLERMRIAAVALVGEHDFSSFRAVACQAKSP 161
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IR + L +SE ++ + +I G+N
Sbjct: 162 IRRVLYLDLSE-----------REGLITLAI-----------GAN--------------- 184
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
FL+H VR I GVL A+G GE +V +L+ + A GL FV+ D
Sbjct: 185 ---GFLHHMVRNIAGVLMAIGRGEASVDWTRELLEVRDRRLGGVTAQPQGLY--FVRADY 239
Query: 357 PED---DQTDAAESLETCPDPV 375
P + Q++ A+ L+ + +
Sbjct: 240 PAEFGLPQSERADPLQRLKNSI 261
>gi|220928242|ref|YP_002505151.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10]
gi|254789632|sp|B8I814.1|TRUA_CLOCE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|219998570|gb|ACL75171.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10]
Length = 245
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 53/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT + G Q Q N +TV V+++A K +G+ V ++ SRTD GVHA V H
Sbjct: 6 LTIEYDGTNYHGWQIQKNAKTVQEVIQKALSKLLGEDVGVTGCSRTDVGVHAYGQVAHFL 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ + PG+ A+N+ L DI++ + VP +FHAR+ A+ + Y Y
Sbjct: 66 TD---SKIPGDKFS--------YAINNLLPD--DIVIKNSEEVPEEFHARYSAKGKKYRY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P S ++R+ HV EL++ MQ+A G HDF +F+A+G Q S +R
Sbjct: 113 LIYNSPHA-SAIMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQATGGQVRSTVR--- 168
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
E++ EV + +D+ + SI+ S NG F
Sbjct: 169 EIYGMEVY-------VKEDNMI--SIEVSG-----NG----------------------F 192
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+I G L VG G+L S++ I+ T A APA GL L + Y
Sbjct: 193 LYNMVRIIAGTLIYVGMGKLHESEIPGIIAGLDRTKAGKTAPAQGLYLVQIYY 245
>gi|424778886|ref|ZP_18205824.1| tRNA pseudouridine synthase A [Alcaligenes sp. HPC1271]
gi|422886315|gb|EKU28739.1| tRNA pseudouridine synthase A [Alcaligenes sp. HPC1271]
Length = 271
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 138/311 (44%), Gaps = 58/311 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R + V Y GT + G Q Q TV VLE+A +F QPVS + RTD GVHA +
Sbjct: 1 MRRIALGVCYEGTPWLGWQSQAGGNTVQDVLEQALGRFTAQPVSTICAGRTDTGVHALNQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D ++R +S V R +N L + V R VP DFHARF AQ
Sbjct: 61 VVHLDTA--AERSL-------ESWV--RGLNALLPDS--VSVQWAREVPDDFHARFSAQG 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y + + AW V LDL MQEA + LVG HDFS+FR+S CQA SP
Sbjct: 108 RHYVYLLRQHRVRSPLLHGRVAW-VFRPLDLALMQEAAQHLVGEHDFSAFRSSQCQAASP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RT+ ++ + + LF
Sbjct: 167 VRTMSQIRIEQQGDFFLFRF---------------------------------------- 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY-- 354
A +FL+H +R ++G+L +G G V +L + ++P A GL L V Y
Sbjct: 187 SANAFLHHMIRNLMGMLIYIGQGRQPPDWVLHLLAQRDRRLSAPTFDASGLYLAGVDYPK 246
Query: 355 --DLPEDDQTD 363
D+P + D
Sbjct: 247 QFDIPASNPYD 257
>gi|421512597|ref|ZP_15959400.1| tRNA pseudouridine synthase A [Enterococcus faecalis ATCC 29212]
gi|401674285|gb|EJS80640.1| tRNA pseudouridine synthase A [Enterococcus faecalis ATCC 29212]
Length = 253
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 136/305 (44%), Gaps = 57/305 (18%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVH 112
NK RY + Y GT F G QKQ N RTV +E+ + G V++ S RTDAGVH
Sbjct: 2 NKNYARYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVH 61
Query: 113 AASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
A V H D + +P E + R A++ Q+ DI V V V DFHAR+
Sbjct: 62 AMGQVIHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARY 108
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
E+TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG
Sbjct: 109 HVIEKTYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSS 167
Query: 233 ANSPIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
+RT+ E +HV+E F+
Sbjct: 168 VEDKVRTIHEASVHVNETGDELTFT----------------------------------- 192
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
R FLY +R++VG L +G G L + + I+ AK A P A GL L
Sbjct: 193 -----FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLA 247
Query: 351 FVKYD 355
VKY+
Sbjct: 248 EVKYE 252
>gi|421078729|ref|ZP_15539679.1| tRNA pseudouridine synthase A [Pelosinus fermentans JBW45]
gi|392523205|gb|EIW46381.1| tRNA pseudouridine synthase A [Pelosinus fermentans JBW45]
Length = 244
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 133/293 (45%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ + Y GT + G Q+Q+N + VLE+ K +G I ++ RTD+GVHA V +
Sbjct: 6 LTLAYDGTAYHGFQRQINAIGIQQVLEDKLAKIVGHTFRIHMAGRTDSGVHAYGQVVNF- 64
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
K +P ++ R++ + DI+V D VP +F A++ AQ + Y Y
Sbjct: 65 -------KTTSTIPVDRIAIASRSLLPY-----DIVVLDAEEVPDNFDAQYSAQSKIYVY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
+I P + F ++ W + + L++ AM+EA + ++G HDFS+FRASG + SPIRT+
Sbjct: 113 KIYQHTVP-NPFLRNLVWTIPQTLNVSAMEEAAQTIIGTHDFSAFRASGGASVSPIRTIM 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
+ QD R E+ F
Sbjct: 172 AVECQL-----------QD-----------------------------RILELSFWGNGF 191
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LYH VR I G L VG G+ ++ + I + + A APA GL L V+Y
Sbjct: 192 LYHMVRNITGTLVNVGLGKTSLEKFKTIFEGRDRKKAGATAPAHGLYLKEVRY 244
>gi|87121856|ref|ZP_01077742.1| tRNA-pseudouridine synthase I [Marinomonas sp. MED121]
gi|86162885|gb|EAQ64164.1| tRNA-pseudouridine synthase I [Marinomonas sp. MED121]
Length = 275
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 135/305 (44%), Gaps = 61/305 (20%)
Query: 58 QRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ + VEY G+ + G Q Q + TV LEEA K + + + RTDA VHA++
Sbjct: 4 KKVALVVEYKGSEYKGWQAQKYDVPTVQKCLEEALSKIAAHTIKVVCAGRTDASVHASAQ 63
Query: 117 VCH--VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H DVER S+R VN L DI V + FHARF A
Sbjct: 64 VVHFETDVER-SER------------AWTLGVNSNLPK--DIAVVAAANMHPSFHARFSA 108
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I S P ++ K+ W ++LD+ MQ+A KV VG HDFSSFRA GCQA+
Sbjct: 109 VSRRYRYVIYSHPLRPAIMSKEVTW-THKKLDILKMQQAAKVFVGKHDFSSFRAVGCQAH 167
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P+RT+ + + +G V I
Sbjct: 168 TPVRTILNFEIYQ-----------------------------SGQYIVLDI--------- 189
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RA +FL+H +R GVL +G GE VS ++L AK T P GL FV
Sbjct: 190 --RANAFLHHMIRNFAGVLMTIGAGEEEVSWASKVLAAKDRTKGGITGPPEGLY--FVDA 245
Query: 355 DLPED 359
+ P +
Sbjct: 246 EYPPE 250
>gi|42559808|sp|Q89BP1.2|TRUA_BRAJA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
Length = 245
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 133/298 (44%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE A G + + + RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+E+ PP R +N L+ I V + VP F ARF A +
Sbjct: 61 VAHVDIEK--------QFPP---GRFRDGLNAHLRPH-PIAVLEAEIVPDTFEARFSAVK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L++ + AW V LD AM A + L+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRIVNTRANLAL-DIGHAWRVPRRLDSDAMHAAARRLLGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V + R +I
Sbjct: 168 EKTLDQLDVL----------------------------------------RDGREITIIT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G T D+ L A+ A +AP GL L V Y
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLYLVKVDY 245
>gi|171777516|ref|ZP_02919238.1| hypothetical protein STRINF_00067 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704648|ref|YP_005203107.1| tRNA pseudouridylate synthase I [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171283226|gb|EDT48650.1| tRNA pseudouridine synthase A [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374681347|gb|AEZ61636.1| tRNA pseudouridylate synthase I [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 249
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 127/298 (42%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y G F+G Q+Q + R+V LE+ + GQPV + + RTD+GVHA V
Sbjct: 3 RYKATISYDGRLFAGFQRQPSERSVQEELEKTLQRLNSGQPVKVHGAGRTDSGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ P V + QS DI V V V DFH+R+ +
Sbjct: 63 VHFDL-------------PQARDVEKLRFGLDTQSPEDIDVVKVELVSDDFHSRYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + SG P + + A H LDL MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDSG-RPKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ +++D K G +
Sbjct: 169 RTITR----------------------ATVDIDEKTGF----------------FVFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS ++ +L +K A P A GL L + YD
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLASKNRDLAGPTAAGNGLYLKEIIYD 248
>gi|78485146|ref|YP_391071.1| tRNA pseudouridine synthase A [Thiomicrospira crunogena XCL-2]
gi|123741632|sp|Q31HH6.1|TRUA_THICR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|78363432|gb|ABB41397.1| tRNA pseudouridine synthase A [Thiomicrospira crunogena XCL-2]
Length = 262
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 135/297 (45%), Gaps = 56/297 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
I +EY GT + G Q Q +C +V LE+A +P+ ++ + RTD GVHA + H +
Sbjct: 6 IGIEYQGTAYCGWQHQKHCDSVQQQLEKALSYIADEPIGLNCAGRTDTGVHAIGQIAHFE 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ +P D + + + VN Q DI VT V+ +P DFHARF A R Y Y
Sbjct: 66 T---NASRP-------DKAWI-QGVN--TQLPNDIRVTWVKPMPEDFHARFSAVARQYRY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P ++ W LD++ M A + L+G +DFSSFRA+GCQA+ R +
Sbjct: 113 VIFNRPVHSAILANRVTWE-NRPLDVKKMHAAAQDLLGENDFSSFRAAGCQASHANRNVQ 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
L VS G+ VF V +A +F
Sbjct: 172 YLQVSR------------------------------QGNFVF----------VDIQANAF 191
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPE 358
L+H VR IVG L VG + V V +LK + T A APA GL FV PE
Sbjct: 192 LHHMVRNIVGTLLEVGRLDKPVEWVSELLKKQDRTQAGMTAPAAGLY--FVNALYPE 246
>gi|254786497|ref|YP_003073926.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901]
gi|237685680|gb|ACR12944.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901]
Length = 286
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 137/305 (44%), Gaps = 55/305 (18%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M + +QR + VEY+G F G QKQ + TV LE A + V++ + RTDA
Sbjct: 16 MLVPEGMQRVALGVEYLGASFRGFQKQASTPDTVQARLERAISAVAAEEVTLVCAGRTDA 75
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GV A+ V H D +S R L + VN L + VT V FH
Sbjct: 76 GVSASGQVIHFDT--LSSRPLKAWL---------QGVNTHLPDA--VRVTWAMPVSFHFH 122
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
ARF A RTY Y I + P ++F + W LD+ MQ A + L+G HDFSSFRA+
Sbjct: 123 ARFSALSRTYHYWIQTEPVRSALFSQQLTW-TGHSLDVERMQLAAESLLGEHDFSSFRAA 181
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
CQA+SP+R + + + LF
Sbjct: 182 QCQAHSPVREIQAVSFERYGNLILFR---------------------------------- 207
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
RA +FL+H VR ++G L VG G + S +E++L A+ T A+P A GLSL
Sbjct: 208 ------VRANAFLHHMVRNLIGSLMLVGRGLQSPSWIEQLLAARDRTLAAPTAAPWGLSL 261
Query: 350 GFVKY 354
V+Y
Sbjct: 262 VAVEY 266
>gi|74191686|dbj|BAE30412.1| unnamed protein product [Mus musculus]
Length = 280
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 141/288 (48%), Gaps = 64/288 (22%)
Query: 98 PVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIM 157
PV ++SSRTDAGVHA SN H+D++R +PG+ P VV +A+N L+ I
Sbjct: 21 PVRFTISSRTDAGVHALSNAAHLDIQR----RPGQS--PFSPEVVAKALNTHLKHPA-IR 73
Query: 158 VTDVRCVPSDFHARFRAQERTYFYRILSG---PEPLSVFEKDRAWHV-TEELDLRAMQEA 213
V VP+DFHAR A RTY YR+ +G P L VFE++ W + TE LD+ AMQEA
Sbjct: 74 VLKAFRVPNDFHARHAATSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEA 133
Query: 214 CKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKL 273
+ L+G HDFS+F+++G + +RTL + VS +S
Sbjct: 134 AQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSP--------------------GPASPF 173
Query: 274 GMPNGGSNVFGIRKKHRSYEVIARARSFLYH------------------------QVRLI 309
+P G ++ + + + ++SFLY QVR +
Sbjct: 174 VLPEGS-------RRLQFWTLEFESQSFLYRQVGCLNPHRMGSGRHTCDNLSSLLQVRRM 226
Query: 310 VGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLSLGFVKYD 355
VL AVG G L + V+ IL+++ + +APA GL L V YD
Sbjct: 227 TAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGLFLKSVLYD 274
>gi|374369812|ref|ZP_09627832.1| tRNA pseudouridine synthase A [Cupriavidus basilensis OR16]
gi|373098628|gb|EHP39729.1| tRNA pseudouridine synthase A [Cupriavidus basilensis OR16]
Length = 274
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 146/315 (46%), Gaps = 60/315 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + + Y G FSG Q Q + TV LE+A +F G V +++ RTD GVHA
Sbjct: 1 MTRIALGLHYDGAAFSGWQSQPHRNTVQDRLEDAIGQFAGSRVQTTVAGRTDTGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D R+P + R VN FL I + + V FHARF A E
Sbjct: 61 VIHIDTHL--TREPFSWV---------RGVNAFLPPS--ISLQWAKPVDDSFHARFLAFE 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
R Y+Y + +GP + + RA ++ + LD+ AM+ A L+G HDFS+FRA+ CQ
Sbjct: 108 RMYYYALYAGPHRVPLVH-GRAGYLMLPPGKGLDVDAMRAAAACLLGEHDFSAFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T+ ++ ++ D G VF
Sbjct: 167 AKSPVKTMYDI------------TLKAD------------------GDWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V RA +FL+H VR ++G L AVG G + +L ++ A+P GL L V
Sbjct: 188 -VRFRASAFLHHMVRNLMGCLVAVGRGRNPPEWLAEVLAGRSRAKAAPTFMPDGLYLAGV 246
Query: 353 KYDLPEDDQTDAAES 367
KY PE Q AA++
Sbjct: 247 KY--PEQYQIPAADT 259
>gi|386826250|ref|ZP_10113357.1| pseudouridylate synthase I [Beggiatoa alba B18LD]
gi|386427134|gb|EIJ40962.1| pseudouridylate synthase I [Beggiatoa alba B18LD]
Length = 258
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 130/305 (42%), Gaps = 65/305 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G F G Q Q RTV G +EEA K PV + + RTD GVHA S +
Sbjct: 2 RIALGVEYNGAAFCGWQLQEAGVRTVQGCVEEALSKVANHPVVATCAGRTDKGVHALSQI 61
Query: 118 CHVDVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H+DV + G V P+D FL ++ V FHARF
Sbjct: 62 IHIDVTAQRSMRSWVLGGNVNLPNDIG--------FLWAQE---------VDEQFHARFS 104
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A+ R+Y Y IL+ ++ AW LD+ MQ A L+G HDF+S+RA GCQA
Sbjct: 105 ARGRSYRYIILNRMVRPALLINKVAWDY-RALDVERMQTAGNFLLGTHDFTSYRAVGCQA 163
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
P+RT+ L V+ + Y
Sbjct: 164 KQPVRTISRLSVT-----------------------------------------RQADYV 182
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
+I A +FL+H VR I GVL +G GE + +L+A+ TA APA GL V
Sbjct: 183 IIEVSANAFLHHMVRNIAGVLMTIGCGEQAPEWAKAVLEARDRTAGGVTAPASGLYFQSV 242
Query: 353 KYDLP 357
Y P
Sbjct: 243 LYPEP 247
>gi|150392126|ref|YP_001322175.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
gi|149951988|gb|ABR50516.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
Length = 255
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 137/302 (45%), Gaps = 66/302 (21%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC-- 118
+I +EY GT +SG Q Q N ++ + +A K G+ ++ S RTDAGVHA V
Sbjct: 5 MIEIEYDGTNYSGWQIQQNAPSIQEEIAKALKKVTGEEITTHGSGRTDAGVHAQGQVASF 64
Query: 119 ----HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
+ ERIS G+ LP DI + + + +P DFHAR+ A
Sbjct: 65 QLHSKIPAERISFALNGK-LPR------------------DITILEAKEMPEDFHARYSA 105
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ Y Y I++ S ++ +HV +LDL+ M++A + L+G HDF F ASG Q
Sbjct: 106 IGKRYGYCIMNNTHG-SALLRNYCYHVPYKLDLQKMKQASETLLGTHDFKGFMASGSQVK 164
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
S +R +DE IN D+ GS ++ +
Sbjct: 165 STVRRIDE--------------INFDTQ----------------GSQIW----------I 184
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+ FLY VR+IVG L +GTG++ ++ IL+ + A APA GL L V Y
Sbjct: 185 TMQGNGFLYKMVRIIVGSLVGIGTGKIKEEALQNILETQNRRVAVKTAPAQGLYLQKVFY 244
Query: 355 DL 356
L
Sbjct: 245 PL 246
>gi|56961964|ref|YP_173686.1| pseudouridylate synthase [Bacillus clausii KSM-K16]
gi|62901228|sp|Q5WLN0.1|TRUA_BACSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56908198|dbj|BAD62725.1| pseudouridylate synthase I [Bacillus clausii KSM-K16]
Length = 261
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 136/304 (44%), Gaps = 59/304 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAF---HKFIGQPVSISLSSRTDAGVHA 113
+ R + Y GT F+G Q Q RTV +E A HK G V + S RTDAGVHA
Sbjct: 1 MSRMACKLSYDGTAFAGYQVQPGKRTVQSEVERALQEIHK--GARVPVVASGRTDAGVHA 58
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D E + P S A+N L DI+VT+ V DFHAR+
Sbjct: 59 CGQVLHFDTEL-------TIAPERWVS----ALNTHLPD--DIVVTNAAMVEPDFHARYG 105
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
AQ + Y Y I GP +VF + A H+ + LD+ AMQ A K L+G HDFS+F A+
Sbjct: 106 AQAKEYRYYIQCGPFE-NVFRRHFAVHIKQALDVPAMQTAAKHLLGTHDFSAFCAANTTV 164
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ + V + +L SI
Sbjct: 165 TDKVRTITHVAVQP-----------SEEGLLISI-------------------------- 187
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY+ VR+IVG L +GTG+ S+++ IL K+ A APA GL L V
Sbjct: 188 ---RGTGFLYNMVRIIVGTLLEIGTGKRVASEMKVILAGKSRNLAGKTAPAHGLCLYEVD 244
Query: 354 YDLP 357
Y P
Sbjct: 245 YGQP 248
>gi|422620780|ref|ZP_16689454.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. japonica
str. M301072]
gi|424066736|ref|ZP_17804199.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|443644810|ref|ZP_21128660.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae
B64]
gi|330901134|gb|EGH32553.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. japonica
str. M301072]
gi|408002025|gb|EKG42295.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|443284827|gb|ELS43832.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae
B64]
Length = 284
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 135/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVDV--ERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T R +P+ FHARF+
Sbjct: 78 VHFDTQAERTLKAWVMGANINLPHDVSV-----------------TWARVMPATFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 180 KSPVKQLHHLRVT-----------------------------------------RHGKMI 198
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE V +L+++ A GL L V
Sbjct: 199 VIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYLVGV 258
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 259 EYRDEFPLPE 268
>gi|229083731|ref|ZP_04216052.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44]
gi|228699589|gb|EEL52253.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44]
Length = 268
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 57/295 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y ++Y G R+ G Q+ N T+ G +E + +GQ + I SRTDAGVHA +
Sbjct: 24 MNNYKFTIQYDGARYKGWQRLGNNDNTIQGKIESVLSEMVGQEIEIIGCSRTDAGVHALN 83
Query: 116 NVCHVDVE-RISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V + +E ++S+ K V++ +N +L + DI +TDV VP FHAR+ +
Sbjct: 84 QVANFKIEEKLSEPK------------VKKYLNQYLPN--DISITDVEQVPERFHARYNS 129
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ +TY Y+I + E + F + + HV ++L++ +MQ+A + L+G HDF++F + +
Sbjct: 130 KAKTYLYKIWN-EEHTNPFMRKYSMHVQKKLNIESMQKAAQYLIGSHDFTAFSNAKSKKK 188
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
S +R E+++ +V + F I
Sbjct: 189 SMVR---EVYMLDVAESEGFIQIR------------------------------------ 209
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FL++ VR IVG L VG G+L + +IL+AK + +A A GL L
Sbjct: 210 -VSGNGFLHNMVRKIVGALVEVGLGQLDADAIPQILEAKQRNQINCLADASGLYL 263
>gi|312866252|ref|ZP_07726471.1| tRNA pseudouridine synthase A [Streptococcus downei F0415]
gi|311098225|gb|EFQ56450.1| tRNA pseudouridine synthase A [Streptococcus downei F0415]
Length = 248
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 131/298 (43%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G Q+Q R+V LE+ + G PV + + RTD+GVHA V
Sbjct: 3 RYKAIISYDGTLFAGFQRQSKERSVQEELEKTLERLNSGNPVKVHGAGRTDSGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + D +R ++ QS DI V V VP FHAR+ +
Sbjct: 63 IHFDLPQT-----------RDEEKLRFGLD--TQSPEDIDVVSVEQVPEVFHARYNPHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + + A H +DL AMQEA L+G HDF+ F ASG + +
Sbjct: 110 TYEFLVDTG-RPKNPMMRAYATHFPYPVDLGAMQEAIADLLGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + + + +D P G VF
Sbjct: 169 RTISQ------------AKVERD---------------PKTGFLVFTF-----------S 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS ++ IL AK A P A GL L + YD
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTILAAKDRNLAGPTAAGNGLYLKEITYD 248
>gi|148245016|ref|YP_001219710.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii
HA]
gi|146326843|dbj|BAF61986.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii
HA]
Length = 247
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 127/291 (43%), Gaps = 63/291 (21%)
Query: 62 IAVEYIGTRFSGSQ-KQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+ VEY+GT F G Q ++ N RTV V+E+A QPV + S RTD GVHA V H
Sbjct: 5 LGVEYLGTHFHGWQCQKSNIRTVQQVIEQALSSVANQPVRVFCSGRTDTGVHATCQVIHF 64
Query: 121 DVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ K K G V P D+ T V+ V +FHARF
Sbjct: 65 ETNIKRKNKAWLFGGNVHLP-----------------SDVNFTWVKPVDDNFHARFSVIT 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y+I + S+ W +LD+ AM +A + L G H+FS+FR S CQA SP
Sbjct: 108 RQYNYKIHNTKIRSSIIATHSLWE-PRKLDIVAMNKAGQYLTGKHNFSAFRGSLCQAKSP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+ ++ + +++ D +L I
Sbjct: 167 IKNIEFIKLTK-----------HDDNILLDI----------------------------- 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+A +FL+H VR IVG L VG GE + V +L +K A P AP GL
Sbjct: 187 KANAFLHHMVRNIVGTLLKVGKGEKPIEWVREVLNSKQRKQAGPTAPPQGL 237
>gi|77458123|ref|YP_347628.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf0-1]
gi|77382126|gb|ABA73639.1| pseudouridylate synthase I [Pseudomonas fluorescens Pf0-1]
Length = 274
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 139/312 (44%), Gaps = 73/312 (23%)
Query: 59 RYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+SG Q+Q TV LE+A K P+S+ + RTDAGVHA V
Sbjct: 8 RVALGVEYKGSRYSGWQRQSTGVLTVQETLEKALSKVADSPISLQCAGRTDAGVHACGQV 67
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + D S+ + + DI V+ + +P+ FHARF+A R
Sbjct: 68 VHFDTQV-------------DRSLKAWVMGANINLPHDISVSWAKIMPAHFHARFKAIAR 114
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSFRASG 230
Y Y I + ++ R H+ EE LD+ M EA + L+G HDFS+FRA
Sbjct: 115 RYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLIGTHDFSAFRAGQ 166
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA SPI+ + L V+ +G V I
Sbjct: 167 CQAKSPIKQMHHLRVTR-----------------------------HGKMIVLDI----- 192
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
RA +FL+H VR I GVL +G GE V ++ +L+++ + A GL L
Sbjct: 193 ------RANAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRERRSGGVTAHPFGLYLV 246
Query: 351 FVKYD----LPE 358
V+Y LPE
Sbjct: 247 QVEYHDEFPLPE 258
>gi|452128330|ref|ZP_21940907.1| tRNA pseudouridine synthase A [Bordetella holmesii H558]
gi|451925377|gb|EMD75515.1| tRNA pseudouridine synthase A [Bordetella holmesii H558]
Length = 271
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 141/310 (45%), Gaps = 60/310 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF--IGQPVSISLSSRTDAGVHAA 114
+ R + + Y G+ + G Q Q + +TV LE A +F IG + + RTD GVHAA
Sbjct: 1 MTRIALGLSYDGSSWQGWQTQPHGQTVQDTLEMALGRFSGIGAALRTVCAGRTDTGVHAA 60
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H+D + +++R V R VN FL S I V VP DFHARF A
Sbjct: 61 MQVIHLDTD-LNRRAESWV----------RGVNAFLPSS--ISVHWALEVPEDFHARFSA 107
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ R+Y Y + G +++ W + LD+ AM++A + L+G HD+SSFR+S CQA
Sbjct: 108 RSRSYVYLLWRGRVRPALWAGRAGW-CFQPLDVAAMRQAAQTLLGEHDYSSFRSSQCQAR 166
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
P+RT+ L ++E +F+
Sbjct: 167 HPVRTMSRLDIAECGDFLVFT--------------------------------------- 187
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+A +FL+H VR I+G L +G G V+ + +L + +P GL L V Y
Sbjct: 188 -LQANAFLHHMVRNIMGALLQIGQGREPVAWMGHLLAVRDRRLGAPTFSPDGLYLSAVDY 246
Query: 355 ----DLPEDD 360
DLP+ D
Sbjct: 247 PRAFDLPQLD 256
>gi|422640315|ref|ZP_16703742.1| tRNA pseudouridine synthase A [Pseudomonas syringae Cit 7]
gi|440741961|ref|ZP_20921292.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP39023]
gi|330952706|gb|EGH52966.1| tRNA pseudouridine synthase A [Pseudomonas syringae Cit 7]
gi|440378298|gb|ELQ14923.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP39023]
Length = 274
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 135/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDV--ERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T R +P+ FHARF+
Sbjct: 68 VHFDTQAERTMKAWVMGANINLPHDVSV-----------------TWARVMPATFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 111 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGTHDFSAFRAGQCQA 169
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 170 KSPVKQLHHLRVT-----------------------------------------RHGKMI 188
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE V +L+++ A GL L V
Sbjct: 189 VIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYLVGV 248
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 249 EYRDEFPLPE 258
>gi|372489802|ref|YP_005029367.1| pseudouridylate synthase I [Dechlorosoma suillum PS]
gi|359356355|gb|AEV27526.1| pseudouridylate synthase I [Dechlorosoma suillum PS]
Length = 275
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 140/316 (44%), Gaps = 60/316 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY G F G Q Q RTV LE A G PV+ + + RTD GVHA S V
Sbjct: 14 RIALGLEYDGNAFHGWQTQPGGRTVQDALEAALGAIAGVPVATTCAGRTDTGVHATSQVV 73
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D +S+ P + V R VN L + V + VP+DFHARF A+ R
Sbjct: 74 HFDAP-VSR--------PESAWV--RGVNSHLPD--GVAVRWAQAVPADFHARFSARGRR 120
Query: 179 YFYRILSGPEPLSVFEKDRAW-HVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y +L+ P + W H+ LD+ MQEA +L+G HDFS+FRA+ CQA +P+
Sbjct: 121 YRYLLLNRPVRPGLAAGRVGWFHL--PLDVAKMQEAADLLLGEHDFSTFRAAECQAKTPV 178
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+ L + VS +F +E
Sbjct: 179 KELRQARVSRQGELVVF------------------------------------DFE---- 198
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD-- 355
A +FL+H +R +VG L VG G+ + + +L A+ A+P GL L V Y+
Sbjct: 199 ATAFLHHMIRNLVGSLVYVGKGKHEPAWIGELLAARDRRLAAPTFSPSGLYLAGVSYEPH 258
Query: 356 --LPEDDQTDAAESLE 369
LPE SLE
Sbjct: 259 WGLPETTVLPQIWSLE 274
>gi|257899365|ref|ZP_05679018.1| tRNA pseudouridine synthase [Enterococcus faecium Com15]
gi|257837277|gb|EEV62351.1| tRNA pseudouridine synthase [Enterococcus faecium Com15]
Length = 248
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 130/300 (43%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G QKQ N RTV +E+ + G+ +++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQRMANGKEITVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D P + + R QS DI V V V +FHAR+ +E+
Sbjct: 63 IHFDY-------------PEERPLERMRFALDTQSPEDIAVRKVEIVSEEFHARYLVKEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A L+G HDF+SF ASG +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYYPYPLDLGKIQRALPDLLGTHDFTSFCASGSSIEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E + V+E LF+
Sbjct: 169 RTIYEAKMEVNETKDELLFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + I+ K AA P A GL L VKY+
Sbjct: 189 FRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPEGLYLYEVKYE 248
>gi|114798579|ref|YP_759245.1| tRNA pseudouridine synthase A [Hyphomonas neptunium ATCC 15444]
gi|123028359|sp|Q0C4U8.1|TRUA_HYPNA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|114738753|gb|ABI76878.1| tRNA pseudouridine synthase A [Hyphomonas neptunium ATCC 15444]
Length = 247
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 134/300 (44%), Gaps = 58/300 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G + G + +TV G LE A + G PV ++ + RTDAGVHA
Sbjct: 1 MPRYRLLIEYNGGPYQGWMRLPGLQTVQGALEAAAAQLDGGPVEVTGAGRTDAGVHATGQ 60
Query: 117 VCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H+D V+R +K V A+N+ L+ I V V DFHARF A
Sbjct: 61 VAHMDLRVDRPNK--------------VADAMNYHLRPH-PIAVLKADRVEEDFHARFSA 105
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y +++ L+ ++ AW V LD M EA + VG HDF++FR S CQA
Sbjct: 106 IARHYRYIVINRRAHLT-HDQGLAWRVPSRLDADKMHEAAQSFVGTHDFTTFRDSECQAL 164
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP++TL L V+ + + E
Sbjct: 165 SPVKTLTRLDVA----------------------------------------RYNDRIEF 184
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SF++ QVR +VG L VG G V IL+A T P+AP+ GL L V Y
Sbjct: 185 TCSAPSFIHRQVRSLVGSLVEVGRGRHPVKWAREILEAADRTRCGPVAPSDGLFLERVDY 244
>gi|381199516|ref|ZP_09906664.1| tRNA pseudouridine synthase A [Sphingobium yanoikuyae XLDN2-5]
Length = 252
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 135/299 (45%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ VE+ G F G Q+Q + +V +E+A H G+ + + RTDAGVH +
Sbjct: 1 MARFAFTVEFDGRPFMGWQRQAHGPSVQQAIEDAIHAVTGERAILHAAGRTDAGVHGLAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H DVE+ P + A+N L+ + + V D+HARF
Sbjct: 61 RAHADVEK-----------PLTPFRLMEAINAKLRPH-PVAILACEEVAPDWHARFSCIG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI + PL++ E AW V + LD AM +A ++LVG HDF++FR+ CQA SP
Sbjct: 109 RAYIYRIANRRAPLTL-ESGLAWRVIQPLDADAMHDAAQILVGHHDFTTFRSVHCQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+++L L V ++ + A
Sbjct: 168 LKSLAMLDVE----------------------------------------RQGDRIAIRA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG L VG G + D+ L+A+ + AP GL FV+ D
Sbjct: 188 EARSFLHHQVRSMVGCLAMVGMGRWSADDLRDALEARDRARLALNAPPDGLY--FVRAD 244
>gi|66044907|ref|YP_234748.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae
B728a]
gi|63255614|gb|AAY36710.1| tRNA pseudouridine synthase [Pseudomonas syringae pv. syringae
B728a]
Length = 284
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 134/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVDVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + K + PHD SV T R +P+ FHARF+
Sbjct: 78 VHFDTQAERSMKAWVMGANINLPHDVSV-----------------TWARVMPATFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 180 KSPVKQLHHLRVT-----------------------------------------RHGKMI 198
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE + +L+++ A GL L V
Sbjct: 199 VIDVRANAFLHHMVRNIAGVLMTIGTGERPIEWAREVLESRIRRTGGVTAHPYGLYLVGV 258
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 259 EYRDEFPLPE 268
>gi|225867856|ref|YP_002743804.1| tRNA pseudouridine synthase A [Streptococcus equi subsp.
zooepidemicus]
gi|259550446|sp|C0MFQ1.1|TRUA_STRS7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|225701132|emb|CAW98001.1| tRNA pseudouridine synthase A [Streptococcus equi subsp.
zooepidemicus]
Length = 249
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 133/300 (44%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q+Q RTV +E+ K G Q + I + RTDAGVHA
Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGRTDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+E+ KR P ++ D+ Q+ DI V + DFHAR+
Sbjct: 61 QVIHFDLEQ--KRDPEKLRFALDT-----------QTPDDIDVISLEAAADDFHARYHKH 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY + + G P + + A H LD+ MQ A K LVG HDF+ F A+G +
Sbjct: 108 FKTYEFLVDIG-RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKN 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ TA +++ QD P G VF
Sbjct: 167 KVRTI----------TA--ATLTQD---------------PKTGFLVFTFS--------- 190
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G L + + +L++K A P A GL L + Y+
Sbjct: 191 --GNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGNGLYLKEIIYE 248
>gi|442803780|ref|YP_007371929.1| tRNA pseudouridine synthase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739630|gb|AGC67319.1| tRNA pseudouridine synthase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 266
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 134/307 (43%), Gaps = 70/307 (22%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+R + +EY G+ F G Q Q N +V G +E+A K G+ VS++ S RTDAGVHA
Sbjct: 3 FKRIKLVIEYDGSFFHGWQVQNNQLSVQGEIEKAIFKITGEKVSVTGSGRTDAGVHAFGQ 62
Query: 117 VCHVDVERISKRKPGE--------VLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
V H D + R P E VLPP I V + V DF
Sbjct: 63 VAHFDTQ---SRIPAEKFAVVLNTVLPP------------------SIAVISSKEVSPDF 101
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A ++TY Y++L+ P + +K RAWHV LD+ +M A +G HDF++F A
Sbjct: 102 HARFSAIKKTYKYKVLNRPMRSPIMDK-RAWHVPWPLDIESMNRAAAYFIGRHDFTAFCA 160
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
SG + +R E++VSE ++
Sbjct: 161 SGHNVKNFVR---EIYVSEWT-------------------------------------EE 180
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
+ FLY+ VR++ G + VG + + ++ +L+ K A AP GL
Sbjct: 181 EGCFVYTVTGNGFLYNMVRIMTGTMVEVGLNKRSAENIPELLEKKNRRLAGITAPPYGLY 240
Query: 349 LGFVKYD 355
L V YD
Sbjct: 241 LWEVFYD 247
>gi|393757706|ref|ZP_10346530.1| tRNA pseudouridine synthase A [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393165398|gb|EJC65447.1| tRNA pseudouridine synthase A [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 274
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 140/313 (44%), Gaps = 62/313 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R + V Y GT + G Q Q TV VLE+A +F QPVS + RTD GVHA +
Sbjct: 1 MKRIALGVCYEGTPWLGWQSQAGGNTVQDVLEQALGRFTAQPVSTICAGRTDTGVHALNQ 60
Query: 117 VCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H+D VER +S V R +N L + V R VP DFHARF A
Sbjct: 61 VVHLDTTVER-----------SLESWV--RGLNALLPDS--VAVQWAREVPEDFHARFSA 105
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
Q R Y Y + + + AW V L+L MQ+A + LVG HDFS+FR+S CQA
Sbjct: 106 QGRHYIYLLRQHRVRSPLLQGRVAW-VFRPLELSLMQQAAQHLVGEHDFSAFRSSQCQAA 164
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP+RT+ ++ + + LF
Sbjct: 165 SPVRTMTQIQIQQQGDFFLFRF-------------------------------------- 186
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A +FL+H +R ++G+L +G G S V +L + ++P A GL L V Y
Sbjct: 187 --SANAFLHHMIRNLMGMLVYIGQGRQPPSWVLHLLAQRDRRLSAPTFEASGLYLAGVDY 244
Query: 355 ----DLPEDDQTD 363
DLP D D
Sbjct: 245 PAHFDLPTSDPDD 257
>gi|255604972|ref|XP_002538318.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223512770|gb|EEF24066.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 283
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 133/297 (44%), Gaps = 54/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R ++ +EY G+RF G Q Q + V L+ A + G V +S + RTDAGVHA S V
Sbjct: 26 RVVLGLEYDGSRFCGWQSQPSGAAVQDCLQTALAQMAGHEVKVSAAGRTDAGVHALSQVA 85
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D V P ++ V R VN FL + + V V +FHARF A+ R+
Sbjct: 86 HFDT---------AVTRPQNAWV--RGVNAFLPT--GVRVLWASEVDVEFHARFSAERRS 132
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y + P +V W+ LDL+AM+ A +L+G HDFS+FRAS CQA +PI+
Sbjct: 133 YQYVLQVSPVAPAVLSGKVGWY-HRPLDLKAMRNAASILLGEHDFSAFRASECQAKTPIK 191
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
L + + + + LF A
Sbjct: 192 HLIQADIRQFDNVILFEFT----------------------------------------A 211
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
+FL+H VR +VG L VG GE + +L+ K A+P GL L V YD
Sbjct: 212 SAFLHHMVRNLVGSLVYVGKGEHPPEWMRTLLEQKDRRLAAPTFMPDGLYLTGVHYD 268
>gi|241765867|ref|ZP_04763802.1| tRNA pseudouridine synthase A [Acidovorax delafieldii 2AN]
gi|241364216|gb|EER59401.1| tRNA pseudouridine synthase A [Acidovorax delafieldii 2AN]
Length = 289
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 133/289 (46%), Gaps = 42/289 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + V Y G R++G Q Q + TV LE A +F Q VS + RTDAGVH V
Sbjct: 19 RVALGVSYNGQRYNGWQSQPSGNTVQDHLEAALGRFTTQQVSTLCAGRTDAGVHGLMQVV 78
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + +P D+S VR N FL DI V R VPS FHAR A R
Sbjct: 79 HFDTTLV---RP-------DASWVR-GTNAFLPQ--DIAVQWARAVPSGFHARASAVARR 125
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +L P SV E R V L+ AM++A L+G HDF+SFRAS CQA SP++
Sbjct: 126 YAYVLLQSPVRPSV-EAGRVGWVFNALNEDAMRQAALRLLGEHDFTSFRASACQAKSPVK 184
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL + ++ + +S G + +E A
Sbjct: 185 TLQRIDITR-----------------TPCPRASAAGE---------FDACYWRFEF--EA 216
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H +R I+G L AVG G S + +L A + AA+P GL
Sbjct: 217 NAFLHHMIRNIMGSLVAVGKGTKPPSWISEVLDAHSRDAAAPTFSPDGL 265
>gi|33596565|ref|NP_884208.1| tRNA pseudouridine synthase A [Bordetella parapertussis 12822]
gi|33601118|ref|NP_888678.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica RB50]
gi|410472672|ref|YP_006895953.1| tRNA pseudouridine synthase A [Bordetella parapertussis Bpp5]
gi|412338699|ref|YP_006967454.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica 253]
gi|427815178|ref|ZP_18982242.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica 1289]
gi|42559762|sp|Q7U376.1|TRUA_BORPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|42559763|sp|Q7U386.1|TRUA_BORBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|33566334|emb|CAE37247.1| tRNA pseudouridine synthase A [Bordetella parapertussis]
gi|33575553|emb|CAE32631.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica RB50]
gi|408442782|emb|CCJ49348.1| tRNA pseudouridine synthase A [Bordetella parapertussis Bpp5]
gi|408768533|emb|CCJ53299.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica 253]
gi|410566178|emb|CCN23738.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica 1289]
Length = 270
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 139/300 (46%), Gaps = 56/300 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQ--PVSISLSSRTDAGVHAA 114
+ R + + Y G+ + G Q Q + TV +E A F G PV+ + RTD GVHAA
Sbjct: 1 MSRIALGLAYDGSAWQGWQTQPHGVTVQDQVEAALASFAGGGGPVATVCAGRTDTGVHAA 60
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H+D + + +R D S VR VN FL I+V R V FHARF A
Sbjct: 61 MQVIHLDTD-LQRR---------DESWVR-GVNAFLPPS--IVVQWARPVSEAFHARFSA 107
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ RTY Y + G +++ W + LD+ AM+ A + L+G HDFSSFR+S CQA
Sbjct: 108 RSRTYVYLLWRGRVRPALWAGRAGW-AFQPLDVPAMRAAARTLLGEHDFSSFRSSQCQAR 166
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
P+RTL L + E G VF +
Sbjct: 167 HPVRTLHRLDIDE-----------------------------RGAFLVFTL--------- 188
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RA +FL+H VR ++G L VG G +V+ ++ +L+A+ +P GL L ++Y
Sbjct: 189 --RANAFLHHMVRNLIGALLQVGQGRESVAWMDALLRARDRRLGAPTFMPDGLYLSAIEY 246
>gi|378949833|ref|YP_005207321.1| Pseudouridylate synthase [Pseudomonas fluorescens F113]
gi|359759847|gb|AEV61926.1| Pseudouridylate synthase [Pseudomonas fluorescens F113]
Length = 284
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 139/316 (43%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLHCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + LVG HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGVHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L ++ + A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWIKEVLDSRVRRSGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 253 LYLVQVEYRDEFELPE 268
>gi|398844100|ref|ZP_10601204.1| pseudouridylate synthase I [Pseudomonas sp. GM84]
gi|398254905|gb|EJN39958.1| pseudouridylate synthase I [Pseudomonas sp. GM84]
Length = 286
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 138/315 (43%), Gaps = 65/315 (20%)
Query: 52 STNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAG 110
S + R + VEY G+R+ G Q+Q + +V LE+A K +P+S+ + RTDAG
Sbjct: 13 SAAEGFTRIALGVEYKGSRYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAG 72
Query: 111 VHAASNVCHVDVERISKRKPGEVLP----PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPS 166
VH + H D + + + PHD SVV R +P+
Sbjct: 73 VHGCGQIVHFDTHAVRDERAWTLGTNFNLPHDISVVWS-----------------RPMPA 115
Query: 167 DFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSF 226
DFHARF+A R Y Y I + P + ++ W+ LD+ M EA + L+G HDFS+F
Sbjct: 116 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWN-HRPLDVERMAEAAQYLLGTHDFSAF 174
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RAS CQA SPI+ + L V+ +G V +
Sbjct: 175 RASQCQAKSPIKHIHHLRVTR-----------------------------HGQMIVLDV- 204
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE S +L+ + A G
Sbjct: 205 ----------RATAFLHHMVRNIAGVLMTIGAGERPASWAREVLEGRNRREGGVTAHPYG 254
Query: 347 LSLGFVKYDLPEDDQ 361
L L V+ + PE+ Q
Sbjct: 255 LYL--VQVEYPEEFQ 267
>gi|323340405|ref|ZP_08080662.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644]
gi|417974596|ref|ZP_12615405.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644]
gi|323092181|gb|EFZ34796.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644]
gi|346329042|gb|EGX97352.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644]
Length = 250
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 133/302 (44%), Gaps = 58/302 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP--VSISLSSRTDAGVHAAS 115
+RY I + Y GT F+G Q Q N RTV VLE A +K ++I S RTDAGVHA
Sbjct: 3 RRYKITLAYDGTNFAGFQVQPNQRTVQSVLEAAVNKMSKNSDYITIYGSGRTDAGVHALG 62
Query: 116 NVCHVDVERISKRKPGEVLPPHD--SSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D PHD + + + +N L +++ ++ VP+DFHARF
Sbjct: 63 QVVHFDF-------------PHDIPAEGMLKGLNSMLPLACEVVGCEI--VPNDFHARFT 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+ Y YR+ G + F++ H LD+ ++EA LVG HDFSSF ASG Q
Sbjct: 108 THGKRYMYRVSRG-RFTNPFKRFYTGHYKYPLDIEKIKEAMPDLVGTHDFSSFVASGSQT 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+ +RT+ E V E D + N
Sbjct: 167 KNHVRTIYEATVRE--------DKENDEIIFEFCGN------------------------ 194
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+QVR++V L +G G+ V D R+ + K APA GL L V
Sbjct: 195 ------GFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRNECRETAPASGLYLKEVY 248
Query: 354 YD 355
YD
Sbjct: 249 YD 250
>gi|268595826|ref|ZP_06129993.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02]
gi|268549215|gb|EEZ44633.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02]
Length = 265
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 141/307 (45%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ TV LE A + G+ V+ +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHAA+ V H D+ P + V R VN L EG I V R V FH
Sbjct: 60 GVHAAAQVVHFDITAAR---------PQQAWV--RGVNAHL-PEG-IAVLHARQVAPGFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M+ A +LVG DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESAPVRSPLL---KNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+GCQA SP++T+ +++ S L +D
Sbjct: 164 AAGCQAKSPVKTIYRTGLTQ-------------SAGLIRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|332685695|ref|YP_004455469.1| tRNA pseudouridine synthase A [Melissococcus plutonius ATCC 35311]
gi|332369704|dbj|BAK20660.1| tRNA pseudouridine synthase A [Melissococcus plutonius ATCC 35311]
Length = 257
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 138/300 (46%), Gaps = 58/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G Q Q+N RTV LE+ +K Q ++I S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQSQINGRTVQDELEKTLYKLNNNQSITIFGSGRTDAGVHALGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D L D +R A++ QS DI V + V ++FHAR+ E+
Sbjct: 63 IHFDY-----------LKARDVEKLRFALD--TQSPADISVKKIEEVSNNFHARYHVIEK 109
Query: 178 TYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
TY ++I +G +P F + A + +DL +++A L+G HDF+SF A+GC +S
Sbjct: 110 TYQFKIDTGKTRDP---FRRFYASYFPHSIDLAKIEKALPDLLGEHDFTSFCAAGCSVDS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
IRT+ E VS+ ++D + +
Sbjct: 167 KIRTIYEASVSQT---------SEDEIIFT------------------------------ 187
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY VR+IVG L +G G++ + + I+ K A P A GL L V Y+
Sbjct: 188 FRGNGFLYKMVRIIVGTLLKIGQGKIKETAIPEIIAGKNRRLAGPTAHPEGLYLVQVIYE 247
>gi|302187262|ref|ZP_07263935.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae
642]
Length = 274
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 135/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDV--ERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T R +P+ FHARF+
Sbjct: 68 VHFDTQAERTMKAWVMGANINLPHDVSV-----------------TWARVMPAAFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 111 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEFLVGTHDFSAFRAGQCQA 169
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 170 KSPVKQLHHLRVT-----------------------------------------RHGKMI 188
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE V +L+++ A GL L V
Sbjct: 189 VIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYLVGV 248
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 249 EYRDEFPLPE 258
>gi|225871229|ref|YP_002747176.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. equi 4047]
gi|254764866|sp|C0M8L4.1|TRUA_STRE4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|225700633|emb|CAW95185.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. equi 4047]
Length = 249
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 133/300 (44%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q+Q RTV +E+ K G Q + I + RTDAGVHA
Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGRTDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+E+ KR P ++ D+ Q+ DI V + DFHAR+
Sbjct: 61 QVIHFDLEQ--KRDPEKLRFALDT-----------QTPDDIDVISLEIAADDFHARYHKH 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY + + G P + + A H LD+ MQ A K LVG HDF+ F A+G +
Sbjct: 108 FKTYEFLVDIG-RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKN 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ TA +++ QD P G VF
Sbjct: 167 KVRTI----------TA--ATLTQD---------------PKTGFLVFTFS--------- 190
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G L + + +L++K A P A GL L + Y+
Sbjct: 191 --GNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGNGLYLKEIIYE 248
>gi|374337298|ref|YP_005093999.1| tRNA pseudouridine synthase A [Streptococcus macedonicus ACA-DC
198]
gi|372283399|emb|CCF01576.1| tRNA pseudouridine synthase A [Streptococcus macedonicus ACA-DC
198]
Length = 249
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 130/298 (43%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y G F+G Q+Q + R+V LE+ K G PV + + RTD+GVHA V
Sbjct: 3 RYKATISYDGRLFAGFQRQPSERSVQEELEKTLQKLNSGNPVKVHGAGRTDSGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ P V + QS DI V V V +FHAR+ +
Sbjct: 63 VHFDL-------------PQARDVEKLRFGLDTQSPEDIDVVKVEQVSDEFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + + A H LDL +MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRHYAMHYPYPLDLISMQEAIKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ V +ID+ + G VF
Sbjct: 169 RTITRATV--------------------AIDDKT-------GFFVFTF-----------S 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS ++ +L++K A P A GL L V YD
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGNGLYLKEVNYD 248
>gi|421522277|ref|ZP_15968919.1| tRNA pseudouridine synthase A [Pseudomonas putida LS46]
gi|402753896|gb|EJX14388.1| tRNA pseudouridine synthase A [Pseudomonas putida LS46]
Length = 284
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 133/301 (44%), Gaps = 63/301 (20%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G R+ G Q+Q + +V LE+A K +P+S+ + RTDAGVH V
Sbjct: 18 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 77
Query: 118 CHVDVERISKRKPGEVLP----PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + + + PHD SVV R +P+DFHARF+
Sbjct: 78 VHFDTRAVRDERAWTMGTNFNLPHDISVVWS-----------------RPMPADFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M EA + L+G HDFS+FRAS CQA
Sbjct: 121 ACARRYRYVIYNDPIRPAHLAEEVTWN-HRPLDVDRMAEAAQFLLGTHDFSAFRASQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ + L V+ +G V +
Sbjct: 180 KSPIKHIYHLRVTR-----------------------------HGQMIVLDV-------- 202
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL A+G GE V+ +L+ + A GL L V+
Sbjct: 203 ---RATAFLHHMVRNIAGVLMAIGAGERPVAWAHEVLEGRNRREGGVTAHPYGLYLVQVE 259
Query: 354 Y 354
Y
Sbjct: 260 Y 260
>gi|239624119|ref|ZP_04667150.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522150|gb|EEQ62016.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 249
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 129/296 (43%), Gaps = 54/296 (18%)
Query: 60 YLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
Y+I + Y GTR+ G QKQ N +T+ G LE K G+PV + S RTDAGVHA V
Sbjct: 3 YIIWLSYDGTRYDGWQKQGNTEKTIQGKLERVLEKLDGEPVEVRGSGRTDAGVHARGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
D + KR P EV+ +N +L DI V ++ P FH+R A +T
Sbjct: 63 --DFQLKGKRAPEEVME---------YLNRYLPE--DIAVWRIQTAPERFHSRLNAVRKT 109
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y+I GP+ VF + + + +ELD+ +M+ A L G DF SF + S +R
Sbjct: 110 YRYQIELGPKK-DVFRRSYYYGLGQELDVASMERAVAYLTGTRDFKSFCGNKKMKKSTVR 168
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL+ + + T L S NG
Sbjct: 169 TLESIRFERLEDTRLHISFT-----------------GNG-------------------- 191
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL VR++ G L VG G D+ IL+A AA AP GL L V+Y
Sbjct: 192 --FLQQMVRILTGTLIEVGQGRRKPEDIRSILEALDRQAAGFTAPPEGLFLEKVEY 245
>gi|406945195|gb|EKD76770.1| tRNA pseudouridine synthase A [uncultured bacterium]
Length = 262
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 134/302 (44%), Gaps = 56/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
I R + V Y G+RF G Q Q +V +E A + QP+S+ + RTDAGVHA++
Sbjct: 2 INRIALGVCYDGSRFHGWQHQEEVSSVQQTVEHALSRVANQPISVVCAGRTDAGVHASAQ 61
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D E ++R + +S++ D+ V + SDFHARF A
Sbjct: 62 VVHFDTE--AERTERSWVFGANSNL-----------PSDVSVLWAKKTTSDFHARFSALS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y I + P +F K W+ + LD+ +M A + L+G HDFS+FR SGCQA
Sbjct: 109 RTYRYIICNQPVRPGIFNKTVGWYY-KPLDVDSMHRAAQYLLGEHDFSAFRGSGCQAQHA 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+R + L V ++ + +
Sbjct: 168 VRIIHHLKVE----------------------------------------RRGQMVVIEV 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RA +FL H VR IVGVL+ +G GE V +L ++ AS + GL L V D
Sbjct: 188 RANAFLLHMVRNIVGVLQEIGEGEKKPEWVIEVLHSRDRRCASITSAPNGLYL--VDIDY 245
Query: 357 PE 358
P
Sbjct: 246 PN 247
>gi|374320616|ref|YP_005073745.1| tRNA pseudouridine synthase A [Paenibacillus terrae HPL-003]
gi|357199625|gb|AET57522.1| tRNA pseudouridine synthase A [Paenibacillus terrae HPL-003]
Length = 256
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 135/294 (45%), Gaps = 44/294 (14%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ V Y GTR+ G Q Q N T+ LE A + G+ + I+ S RTDAGVHA V +
Sbjct: 1 MKVNYDGTRYDGFQTQPNGNTIQDYLENAIYSLTGERLKITGSGRTDAGVHAYGQVFNFH 60
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
E +P + A+N +L DI+VTD R VP FHAR A+ +TY Y
Sbjct: 61 TE--------SPIPIQRWCL---ALNAWLPR--DIIVTDAREVPLSFHARRMAKRKTYRY 107
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P +F + H LD+RAM+E L+G D++SF + Q + IRT+
Sbjct: 108 SINANRFP-DIFHRRTQAHHPTSLDIRAMEEGLGHLIGTFDYTSFASRRSQKTNHIRTIY 166
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
E ++D+S GS+ GI F
Sbjct: 167 E--------------------AFMTVDHS----FSRPGSDDQGI------IHTYITGSGF 196
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
L H VR+I+G L VG G+ + D+ IL+AK + A P A L+L V+YD
Sbjct: 197 LQHMVRIIMGTLLEVGEGKKSADDIPSILEAKNRSKAGPTAVGHALTLWNVEYD 250
>gi|289671992|ref|ZP_06492882.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae
FF5]
gi|422664779|ref|ZP_16724652.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|440719718|ref|ZP_20900142.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP34876]
gi|440728780|ref|ZP_20908982.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP34881]
gi|330975198|gb|EGH75264.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|440360563|gb|ELP97826.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP34881]
gi|440367364|gb|ELQ04429.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP34876]
Length = 274
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 135/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDV--ERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T R +P+ FHARF+
Sbjct: 68 VHFDTQAERTLKAWVMGANINLPHDVSV-----------------TWARVMPATFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 111 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGTHDFSAFRAGQCQA 169
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 170 KSPVKQLHHLRVT-----------------------------------------RHGKMI 188
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE V +L+++ A GL L V
Sbjct: 189 VIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYLVGV 248
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 249 EYRDEFPLPE 258
>gi|365901515|ref|ZP_09439353.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Bradyrhizobium sp. STM
3843]
gi|365417708|emb|CCE11895.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Bradyrhizobium sp. STM
3843]
Length = 245
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 137/298 (45%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE A G P + S RTDAGVHA
Sbjct: 1 MPRYKLIIEYDGAPFCGWQLQETLPSVQGALEAAVQATCGVPTRVHGSGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+++ E P +R A+N L+ + V VP F ARF A++
Sbjct: 61 VAHCDIDK-------EFRPDR----LRDALNAHLRPH-PVAVLAAEIVPETFEARFSARK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L++ + R W V + LD AM EA + L+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRIMNRRANLAL-DMGRVWRVPKRLDSDAMHEAAQRLLGKHDFTTFRDTECQARSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V IR + ++
Sbjct: 168 EKTLDQLDV---------------------------------------IRDGD-AVTILT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G D+ L A+ A +AP GL L V+Y
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGQGRWNADDLYAALAARDRAACGVVAPPEGLYLVRVEY 245
>gi|422676134|ref|ZP_16735468.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aceris str.
M302273]
gi|330973842|gb|EGH73908.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aceris str.
M302273]
Length = 274
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 134/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + K + PHD SV T R +P+ FHARF+
Sbjct: 68 VHFDTQAERSMKAWVMGANINLPHDVSV-----------------TWARVMPATFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 111 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGTHDFSAFRAGQCQA 169
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 170 KSPVKQLHHLRVT-----------------------------------------RHGKMI 188
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE + +L+++ A GL L V
Sbjct: 189 VIDVRANAFLHHMVRNIAGVLMTIGTGERPIEWAREVLESRIRRTGGVTAHPYGLYLVGV 248
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 249 EYRDEFPLPE 258
>gi|288904465|ref|YP_003429686.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34]
gi|306830500|ref|ZP_07463669.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|306832735|ref|ZP_07465871.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338]
gi|325977479|ref|YP_004287195.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|336063600|ref|YP_004558459.1| tRNA pseudouridine synthase A [Streptococcus pasteurianus ATCC
43144]
gi|386337006|ref|YP_006033175.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288731190|emb|CBI12738.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34]
gi|304425084|gb|EFM28214.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338]
gi|304427346|gb|EFM30449.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177407|emb|CBZ47451.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334279642|dbj|BAK27216.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334281800|dbj|BAK29373.1| tRNA pseudouridine synthase A [Streptococcus pasteurianus ATCC
43144]
Length = 249
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 130/298 (43%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y G F+G Q+Q + R+V LE+ K G PV + + RTD+GVHA V
Sbjct: 3 RYKATISYDGRLFAGFQRQPSERSVQEELEKTLQKLNSGNPVKVHGAGRTDSGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ P V + QS DI V V V +FHAR+ +
Sbjct: 63 VHFDL-------------PQARDVEKLRFGLDTQSPEDIDVVKVEQVSDEFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + + A H LDL +MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRHYATHYPYPLDLTSMQEAIKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ V +ID+ + G VF
Sbjct: 169 RTITRATV--------------------AIDDKT-------GFFVFTF-----------S 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS ++ +L++K A P A GL L + YD
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGNGLYLKEINYD 248
>gi|425746122|ref|ZP_18864154.1| tRNA pseudouridine(38-40) synthase [Acinetobacter baumannii WC-323]
gi|425486771|gb|EKU53136.1| tRNA pseudouridine(38-40) synthase [Acinetobacter baumannii WC-323]
Length = 265
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 141/305 (46%), Gaps = 59/305 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQ-KQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+QRY I +E+ GT++ G Q +Q TV +EE + QP+ + + RTDAGVHA +
Sbjct: 1 MQRYAIGIEFCGTQYRGWQTQQAGVVTVQETIEEVLSRIANQPIVLHGAGRTDAGVHATN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D E I +P + +R A + Q DI + ++C+ +FHARF+A
Sbjct: 61 MVAHFDTEAI---RP-------EQGWIRGANS---QLPKDISIQWIKCMDENFHARFKAV 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y Y + + P ++ K H+ + LD++ M +A G H+F +FRA+ CQ+N
Sbjct: 108 ARRYRYVVYNAPTRPALLYKQVT-HLYQTLDVQKMIKAASKFEGTHNFETFRAAACQSNQ 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+R + + E H Y V+
Sbjct: 167 PVRHVKHCRLFE-----------------------------------------HGRYLVL 185
Query: 296 -ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+A FL+H VR I+G L +G G + ++ + A+ TAA AP+ GL F++
Sbjct: 186 DIQADGFLHHMVRNIMGCLLEIGQGMYDIDHIDTMFAAEDRTAAGITAPSDGLY--FIQA 243
Query: 355 DLPED 359
P++
Sbjct: 244 YYPDE 248
>gi|423094455|ref|ZP_17082251.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Q2-87]
gi|397885451|gb|EJL01934.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Q2-87]
Length = 274
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 139/316 (43%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 8 RVALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLHCAGRTDAGVHACGQV 67
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 68 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + LVG HDFS+F
Sbjct: 111 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGVHDFSAF 162
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 163 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 192
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L ++ + A G
Sbjct: 193 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWIKEVLDSRIRRSGGVTAHPFG 242
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 243 LYLVQVEYRDEFELPE 258
>gi|167566409|ref|ZP_02359325.1| tRNA pseudouridine synthase A [Burkholderia oklahomensis EO147]
Length = 270
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 129/296 (43%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + ++Y G F G Q Q + +TV LE A +F + +++ RTD GVH V
Sbjct: 2 RIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D E L D S VR N FL S + V + +P FHARF A ERT
Sbjct: 62 HFDTE----------LDRADFSWVR-GTNAFLPST--VSVQWAKPMPDTFHARFAAFERT 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y+Y + P + W V LD+ AM+EA + LVG HDFS+FR+S CQA SPI+
Sbjct: 109 YYYALYVHPVRSPMLAGRAGW-VHMPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPIK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
L ++ GIR RA
Sbjct: 168 HLYQI----------------------------------------GIRPDGDFIHFRFRA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR ++G L AVG G S + +L ++ A+P GL L V Y
Sbjct: 188 NAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLDSRDRDCAAPTFMPEGLYLAHVGY 243
>gi|350569920|ref|ZP_08938298.1| tRNA pseudouridine synthase A [Neisseria wadsworthii 9715]
gi|349797600|gb|EGZ51357.1| tRNA pseudouridine synthase A [Neisseria wadsworthii 9715]
Length = 273
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 132/298 (44%), Gaps = 55/298 (18%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
QR+ + + Y G+RF G QKQ + T LE+A G+P+++ + RTD GVHA++
Sbjct: 12 QRWALILSYDGSRFFGWQKQADGVLTAQEALEQAIGNIAGEPINVIAAGRTDTGVHASAQ 71
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D + KR P + R VN +L + V V S FHARF A
Sbjct: 72 VVHFDA--LVKRPPQAWV---------RGVNTYLPQ--GLAVLQAIAVDSCFHARFDATG 118
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y + S + W LD+ AM++A LVG HDFSSFRAS CQA SP
Sbjct: 119 RRYRYVLQSSAVRSPLLIGKVGW-THNVLDMSAMKDAVTCLVGEHDFSSFRASQCQAKSP 177
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++T L+S+ P L +D
Sbjct: 178 VKT-------------LYSAKLSGRPSLMMLD---------------------------L 197
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR IVG L VG+G LTV + ++ K+ A P GL L V Y
Sbjct: 198 HGNAFLHHMVRNIVGALVYVGSGRLTVRQFKDLIAEKSRMKAPPTFMPDGLYLTGVDY 255
>gi|430808503|ref|ZP_19435618.1| tRNA pseudouridine synthase A [Cupriavidus sp. HMR-1]
gi|429499158|gb|EKZ97607.1| tRNA pseudouridine synthase A [Cupriavidus sp. HMR-1]
Length = 276
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 147/315 (46%), Gaps = 60/315 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R I + Y G+ +SG Q Q + TV LE+A +F G + +++ RTDAGVHA
Sbjct: 1 MNRIAIGLHYDGSAYSGWQSQPHRNTVQDHLEDAIERFAGVRLLTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D E R S V R VN FL I + V +FHARF A E
Sbjct: 61 VIHLDTELDRDR----------FSWV-RGVNAFLPPS--IALQWAEPVDENFHARFLAYE 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
R Y+Y + +GP + RA ++ + LD+ AM+ A L+G HDFS+FRA+ CQ
Sbjct: 108 RMYYYALYTGPHRAPMIHG-RAGYLMLPHGQRLDVEAMRRASACLLGEHDFSAFRAAECQ 166
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T+ ++ +I D G+ VF
Sbjct: 167 AKSPVKTMYDV------------TIEAD------------------GNWVF--------- 187
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
+ RA +FL+H VR ++G L AVG G + +L+ + A+P GL L V
Sbjct: 188 -LRFRASAFLHHMVRNLMGCLVAVGRGRYPAEWMAEVLEERNRQKAAPTFMPDGLYLVDV 246
Query: 353 KYDLPEDDQTDAAES 367
KY PE Q A+S
Sbjct: 247 KY--PEPYQLPKADS 259
>gi|330810793|ref|YP_004355255.1| tRNA-pseudouridine synthase I [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327378901|gb|AEA70251.1| tRNA-pseudouridine synthase I [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 284
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 139/316 (43%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYNGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLHCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + LVG HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGVHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L ++ + A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWIKEVLDSRIRRSGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 253 LYLVQVEYRDEFELPE 268
>gi|148548973|ref|YP_001269075.1| tRNA pseudouridine synthase A [Pseudomonas putida F1]
gi|148513031|gb|ABQ79891.1| tRNA pseudouridine synthase A [Pseudomonas putida F1]
Length = 332
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 131/297 (44%), Gaps = 55/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G R+ G Q+Q + +V LE+A K +P+S+ + RTDAGVH V
Sbjct: 66 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 125
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + D N L DI V R +P+DFHARF+A R
Sbjct: 126 VHFDTRAVR-----------DERAWTMGTNFNLPH--DISVVWSRPMPADFHARFKACAR 172
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y I + P + ++ W+ LD+ M EA + L+G HDFS+FRAS CQA SPI
Sbjct: 173 RYRYVIYNDPIRPAHLAEEVTWN-HRPLDVDRMAEAAQFLLGTHDFSAFRASQCQAKSPI 231
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+ + L V+ +G V + R
Sbjct: 232 KHIYHLRVTR-----------------------------HGQMIVLDV-----------R 251
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A +FL+H VR I GVL A+G GE V+ +L+ + A GL L V+Y
Sbjct: 252 ATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYLVQVEY 308
>gi|329945764|ref|ZP_08293451.1| putative tRNA pseudouridine synthase A [Actinomyces sp. oral taxon
170 str. F0386]
gi|328528212|gb|EGF55190.1| putative tRNA pseudouridine synthase A [Actinomyces sp. oral taxon
170 str. F0386]
Length = 308
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 144/326 (44%), Gaps = 56/326 (17%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
N+ + R + + Y GT FSG Q RTV GVL A + +PV ++++ RTDAGVHA
Sbjct: 11 NRDMPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTSALATVLREPVRLAVAGRTDAGVHA 70
Query: 114 ASNVCHVDVE--------RISKRKPGEVLPPHDSSVVRRAVNHFL----QSEGDIMVTDV 161
A+ V H+DV S R P L + V+ R L + GD++VT
Sbjct: 71 AAQVVHLDVSPEAWAALPGRSDRLPEAALLTRMAGVLAREAQTSLPRTPRGAGDVVVTGA 130
Query: 162 RCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCH 221
R VP F ARF A R Y YRI P + + + + LD+ AM+ + K L+G H
Sbjct: 131 RIVPEAFDARFGALSRRYTYRIADADAPRNPARRATVLWLPDRLDVEAMEASAKPLLGEH 190
Query: 222 DFSSFRASGC---QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNG 278
DF S+ C Q + IRTL L V + P+
Sbjct: 191 DFLSY----CKPRQGATTIRTLRALEWRRVAAG------------------------PDA 222
Query: 279 GSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA 338
G + A +F + VR +VG AVG G + + +L A++ A
Sbjct: 223 GLVTLSV-----------VADAFCHSMVRSLVGAGLAVGQGRRPAAWPDELLAARSRDGA 271
Query: 339 SPMAPACGLSLGFVKYDLPEDDQTDA 364
+P+AP GL+L V Y P DD+ A
Sbjct: 272 APVAPPHGLTLEEVVY--PADDELAA 295
>gi|319763817|ref|YP_004127754.1| tRNA pseudouridine synthase a [Alicycliphilus denitrificans BC]
gi|330823919|ref|YP_004387222.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans K601]
gi|317118378|gb|ADV00867.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans BC]
gi|329309291|gb|AEB83706.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans K601]
Length = 272
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 132/282 (46%), Gaps = 42/282 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + V Y G +SG Q Q + TV LE A +F Q V+ + RTDAGVH V
Sbjct: 2 RVALGVSYNGQAYSGWQSQPSGNTVQDHLEAALGRFATQKVATICAGRTDAGVHGLMQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D +R P + R N FL DI V + VP FHAR A R
Sbjct: 62 HFDTGL--QRAPFSWV---------RGTNTFLPP--DIAVQWAQPVPDAFHARACAVARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +L P SV E R V ELD +AMQ+A + L+G HDFSSFRAS CQA SP++
Sbjct: 109 YAYVLLQSPVRPSV-EAGRVGWVFHELDGQAMQDAVQHLLGEHDFSSFRASACQAKSPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL + + ++ G P G ++ G + +E
Sbjct: 168 TLHRIAI-------------------------TRRG-PANGPSLHGCAPCYWRFEF--EG 199
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASP 340
+FL+H +R I+G + A+G G + ++L A++ AA+P
Sbjct: 200 NAFLHHMIRNIMGCIVAIGQGLYPPQWMRQVLDARSRDAAAP 241
>gi|398864038|ref|ZP_10619579.1| pseudouridylate synthase I [Pseudomonas sp. GM78]
gi|398246088|gb|EJN31589.1| pseudouridylate synthase I [Pseudomonas sp. GM78]
Length = 284
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 140/316 (44%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q++ TV LE A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQVSGVLTVQETLENALSKVADSPVSLLCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + LVG HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAARYLVGTHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L+++ + A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRSGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y LPE
Sbjct: 253 LYLVQVEYRDEFQLPE 268
>gi|398935509|ref|ZP_10666467.1| pseudouridylate synthase I [Pseudomonas sp. GM41(2012)]
gi|398169461|gb|EJM57443.1| pseudouridylate synthase I [Pseudomonas sp. GM41(2012)]
Length = 284
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 141/316 (44%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLLCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + LVG HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGTHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L+++ + A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRSGGVTAHPYG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 253 LYLVQVEYRDEFELPE 268
>gi|422633262|ref|ZP_16698409.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. pisi str.
1704B]
gi|330943525|gb|EGH45866.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. pisi str.
1704B]
Length = 284
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 134/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T R +P+ FHARF+
Sbjct: 78 VHFDTQAERTLKAWVMGANINLPHDVSV-----------------TWARVMPATFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ H
Sbjct: 180 KSPVKQLHHLRVTH-----------------------------------------HGKMI 198
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE V +L+++ A GL L V
Sbjct: 199 VIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYLVGV 258
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 259 EYRDEFPLPE 268
>gi|386013194|ref|YP_005931471.1| TruA [Pseudomonas putida BIRD-1]
gi|313499900|gb|ADR61266.1| TruA [Pseudomonas putida BIRD-1]
Length = 284
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 133/301 (44%), Gaps = 63/301 (20%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G R+ G Q+Q + +V LE+A K +P+S+ + RTDAGVH V
Sbjct: 18 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICAGRTDAGVHGCGQV 77
Query: 118 CHVDVERISKRKPGEVLP----PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + + + PHD SVV R +P+DFHARF+
Sbjct: 78 VHFDTRAVRDERAWTMGTNFNLPHDISVVWS-----------------RPMPADFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M EA + L+G HDFS+FRAS CQA
Sbjct: 121 ACARRYRYVIYNDPIRPAHLAEEVTWN-HRPLDVDRMAEAAQFLLGTHDFSAFRASQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ + L V+ +G V +
Sbjct: 180 KSPIKHIYHLRVTR-----------------------------HGQMIVLDV-------- 202
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL A+G GE V+ +L+ + A GL L V+
Sbjct: 203 ---RATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYLVQVE 259
Query: 354 Y 354
Y
Sbjct: 260 Y 260
>gi|194099947|ref|YP_002003085.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae NCCP11945]
gi|240017604|ref|ZP_04724144.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA6140]
gi|254494689|ref|ZP_05107860.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 1291]
gi|268600271|ref|ZP_06134438.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11]
gi|268602508|ref|ZP_06136675.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18]
gi|385336855|ref|YP_005890802.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107]
gi|238693230|sp|B4RR02.1|TRUA_NEIG2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|193935237|gb|ACF31061.1| TruA [Neisseria gonorrhoeae NCCP11945]
gi|226513729|gb|EEH63074.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 1291]
gi|268584402|gb|EEZ49078.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11]
gi|268586639|gb|EEZ51315.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18]
gi|317165398|gb|ADV08939.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107]
Length = 265
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 141/307 (45%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ TV LE A + G+ V+ +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHAA+ V H D+ P + V R VN L EG I V R V FH
Sbjct: 60 GVHAAAQVVHFDITAAR---------PQQAWV--RGVNAHL-PEG-IAVLHARQVAPGFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M+ A +L+G DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESAPVRSPLL---KNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+GCQA SP++T+ +++ S L +D
Sbjct: 164 AAGCQAKSPVKTIYRTDLTQ-------------SAGLIRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|59802129|ref|YP_208841.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA 1090]
gi|62901142|sp|Q5F5V8.1|TRUA_NEIG1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|59719024|gb|AAW90429.1| putative tRNA pseudouridine synthase [Neisseria gonorrhoeae FA
1090]
Length = 265
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 140/307 (45%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ TV LE A + G+ V+ +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V H D + +P + R VN L EG I V R V FH
Sbjct: 60 GVHATAQVVHFDTAAV---RPAQAWI--------RGVNAHL-PEG-IAVLHARQVAPGFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA ELD+ M+ A +LVG DFSSFR
Sbjct: 107 ARFDASGRHYRYLLESAPVRSPL---LKNRAGWTHLELDIGPMRRAAALLVGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+GCQA SP++T+ +++ S L +D
Sbjct: 164 AAGCQAKSPVKTIYRADLTQ-------------SAGLVRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|225850198|ref|YP_002730432.1| tRNA pseudouridine synthase A [Persephonella marina EX-H1]
gi|225645344|gb|ACO03530.1| tRNA pseudouridine synthase A [Persephonella marina EX-H1]
Length = 244
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 135/302 (44%), Gaps = 61/302 (20%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
K+ Y + + YIG + G QKQ RTV GVLEE + + + S RTDAGVHA
Sbjct: 2 KKNHNYKLVIMYIGKNYHGWQKQPKHRTVQGVLEEKLKVLFKEDIVLIGSGRTDAGVHAL 61
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V + + IS RKP E+ ++++ R DI V V VP FHARF A
Sbjct: 62 GQVA--NFKTISYRKPEEIYRYLNATLPR-----------DISVKSVEEVPLSFHARFSA 108
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASG--CQ 232
+ +TY YRI + P+P F W+++++LDL+ M EA +++ D S G +
Sbjct: 109 KGKTYIYRIYTKPDP---FLHGFGWYISKKLDLKGMLEALEIVKKSKDLRSLSKKGEYLR 165
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
+ IR L S+ D ++
Sbjct: 166 EDVEIREL---------------SMTYDGKII---------------------------- 182
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
E+ A FL + VR IVG + +G G L++ + E I++AK T +AP GL L V
Sbjct: 183 EIQITASHFLRYMVRKIVGHVVQIGLGSLSIQEFENIIEAKDPTKGLFIAPPEGLFLKEV 242
Query: 353 KY 354
Y
Sbjct: 243 YY 244
>gi|423698355|ref|ZP_17672845.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Q8r1-96]
gi|388005097|gb|EIK66364.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Q8r1-96]
Length = 274
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 139/316 (43%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLHCAGRTDAGVHACGQV 67
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 68 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + LVG HDFS+F
Sbjct: 111 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGVHDFSAF 162
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 163 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 192
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L ++ + A G
Sbjct: 193 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWIKEVLDSRIRRSGGVTAHPFG 242
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 243 LYLVQVEYRDEFELPE 258
>gi|219853559|ref|YP_002470681.1| hypothetical protein CKR_0216 [Clostridium kluyveri NBRC 12016]
gi|219567283|dbj|BAH05267.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 247
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 135/293 (46%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT +SG Q+Q N T+ LEEA K G+ + SSRTDAGVHA VC+
Sbjct: 9 LVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGFVCNFF 68
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ + P +S ++ +N L DI V D + V S FH+R+ + Y Y
Sbjct: 69 T---ASKIP--------TSNIKMVLNTLLPE--DIAVLDSKEVDSSFHSRYFTTGKEYSY 115
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I++G P V + ++ +LD+ ++ +C+ +G HDFS+F+ G A S IRT+
Sbjct: 116 TIVTGDRP-PVIGRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIK 174
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
EL V + + F N+ G F
Sbjct: 175 ELTVLKEKNIIKF--------------------------NIVG--------------DGF 194
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+I+G L VG G ++ V+ IL++K A PA GL L V Y
Sbjct: 195 LYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLCLEKVFY 247
>gi|414564819|ref|YP_006043780.1| tRNA pseudouridine synthase A [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338847884|gb|AEJ26096.1| tRNA pseudouridine synthase A [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 249
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 133/300 (44%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q+Q RTV +E+ K G Q + I + RTDAGVHA
Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGRTDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+E+ KR P ++ D+ Q+ DI V + DFHAR+
Sbjct: 61 QVIHFDLEQ--KRDPEKLRFALDT-----------QTPDDIDVISLEIAADDFHARYHKH 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY + + G P + + A H LD+ MQ A K LVG HDF+ F A+G +
Sbjct: 108 FKTYEFLVDIG-RPKNPMMRHYATHYPYPLDIVKMQAAIKDLVGTHDFTGFTAAGTSVKN 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ TA +++ QD P G VF
Sbjct: 167 KVRTI----------TA--ATLTQD---------------PKTGFLVFTFS--------- 190
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G L + + +L++K A P A GL L + Y+
Sbjct: 191 --GNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGNGLYLKEIIYE 248
>gi|410092591|ref|ZP_11289113.1| tRNA pseudouridine synthase A [Pseudomonas viridiflava UASWS0038]
gi|409760020|gb|EKN45188.1| tRNA pseudouridine synthase A [Pseudomonas viridiflava UASWS0038]
Length = 274
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 134/306 (43%), Gaps = 61/306 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + + S+ + + DI VT R +P++FHARF+A R
Sbjct: 68 VHFDTQA-------------ERSMKAWVMGANINLPHDISVTWARVMPAEFHARFKAIAR 114
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y I + + ++ W+ LD+ M EA + LVG HDFS+FRA CQA SPI
Sbjct: 115 RYRYVIYNDQIRPAHLGQEITWN-HRPLDVTRMAEAAQHLVGTHDFSAFRAGQCQAKSPI 173
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-A 296
+ L L V+ +H VI
Sbjct: 174 KQLHHLRVT-----------------------------------------RHGKMIVIDV 192
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY-- 354
RA +FL+H VR I GVL +G GE V +L++K A GL L V+Y
Sbjct: 193 RANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESKVRRTGGVTAHPYGLYLVQVEYRE 252
Query: 355 --DLPE 358
LPE
Sbjct: 253 QFPLPE 258
>gi|153952894|ref|YP_001393659.1| tRNA pseudouridine synthase A [Clostridium kluyveri DSM 555]
gi|189029994|sp|A5N4T0.1|TRUA_CLOK5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|146345775|gb|EDK32311.1| TruA [Clostridium kluyveri DSM 555]
Length = 244
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 135/293 (46%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT +SG Q+Q N T+ LEEA K G+ + SSRTDAGVHA VC+
Sbjct: 6 LVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGFVCNFF 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ + P +S ++ +N L DI V D + V S FH+R+ + Y Y
Sbjct: 66 T---ASKIP--------TSNIKMVLNTLLPE--DIAVLDSKEVDSSFHSRYFTTGKEYSY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I++G P V + ++ +LD+ ++ +C+ +G HDFS+F+ G A S IRT+
Sbjct: 113 TIVTGDRP-PVIGRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIK 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
EL V + + F N+ G F
Sbjct: 172 ELTVLKEKNIIKF--------------------------NIVG--------------DGF 191
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+I+G L VG G ++ V+ IL++K A PA GL L V Y
Sbjct: 192 LYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLCLEKVFY 244
>gi|385792860|ref|YP_005825836.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678185|gb|AEE87314.1| tRNA pseudouridine synthase A [Francisella cf. novicida Fx1]
Length = 258
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 142/304 (46%), Gaps = 60/304 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + +V LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VCHV--DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
+ + D ER S +R VN L DI + V+ V ++F++RF A
Sbjct: 61 IINFYSDAER-------------PLSAWQRGVNALLPQ--DIKILAVQQVDNNFNSRFTA 105
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
RTY Y I + +F + W ELD+ M +AC+ L+G DFSSFR+S CQ+N
Sbjct: 106 INRTYNYIIYNSATSSPIFAEHCLWE-NRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN 164
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + + I Q S ++ +EV
Sbjct: 165 TPFRNIQKAEF-----------IKQGSFIV---------------------------FEV 186
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+ A FL+H +R +VG L VG G + ++ +L+AK T A+ A A GL FV
Sbjct: 187 VGNA--FLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY--FVGV 242
Query: 355 DLPE 358
+ PE
Sbjct: 243 EYPE 246
>gi|257487527|ref|ZP_05641568.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|422683312|ref|ZP_16741573.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|331012647|gb|EGH92703.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
Length = 284
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 135/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVDV--ERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER +K + PHD SV T R +P+ FHARF+
Sbjct: 78 VHFDTQAERTTKAWVMGANINLPHDVSV-----------------TWARVMPATFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M A + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMALAAEYLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 180 KSPVKQLHHLRVT-----------------------------------------RHGKMI 198
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE V +L+++ A GL L V
Sbjct: 199 VIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAHPYGLYLVQV 258
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 259 EYRDEFPLPE 268
>gi|58696853|ref|ZP_00372372.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila
simulans]
gi|58536935|gb|EAL60107.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila
simulans]
Length = 188
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 106/188 (56%), Gaps = 14/188 (7%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I VEY G+ FSG QKQ + ++ +E A F G+ +++ RTDAGVHA V
Sbjct: 2 RYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQV 61
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+E K E+ +R A+N+ L+S I+V + V FHARF A++R
Sbjct: 62 AHFDME-----KECELYR------IRNAINYHLKSI-PIVVLNAEVVDDAFHARFSAKKR 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI++ P + E W V LD+ M+EA K L+G HD SSFR+ C A +PI
Sbjct: 110 YYEYRIVNRYAP-AALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPI 168
Query: 238 RTLDELHV 245
RT+D++ +
Sbjct: 169 RTIDDIDI 176
>gi|395444632|ref|YP_006384885.1| tRNA pseudouridine synthase A [Pseudomonas putida ND6]
gi|388558629|gb|AFK67770.1| tRNA pseudouridine synthase A [Pseudomonas putida ND6]
Length = 286
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 133/301 (44%), Gaps = 63/301 (20%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G R+ G Q+Q + +V LE+A K +P+S+ + RTDAGVH V
Sbjct: 20 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 79
Query: 118 CHVDVERISKRKPGEVLP----PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + + + PHD SVV R +P+DFHARF+
Sbjct: 80 VHFDTRAVRDERAWTMGTNFNLPHDISVVWS-----------------RPMPADFHARFK 122
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M EA + L+G HDFS+FRAS CQA
Sbjct: 123 ACARRYRYVIYNDPIRPAHLAEEVTWN-HRPLDVDRMAEAAQYLLGTHDFSAFRASQCQA 181
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ + L V+ +G V +
Sbjct: 182 KSPIKHIYHLRVTR-----------------------------HGQMIVLDV-------- 204
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL A+G GE V+ +L+ + A GL L V+
Sbjct: 205 ---RATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYLVQVE 261
Query: 354 Y 354
Y
Sbjct: 262 Y 262
>gi|296104004|ref|YP_003614150.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058463|gb|ADF63201.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 270
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 140/309 (45%), Gaps = 60/309 (19%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
K + + + +EY G+++ G Q+Q R+V LE+A + +P+++ + RTDAGVH
Sbjct: 7 KPVHKVALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVLCAGRTDAGVHGT 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H + + K + VN L GDI V V+ VP DFHARF A
Sbjct: 67 GQVVHFETTAVRK-----------DAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSA 113
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I + +V + H E LD M A + L+G +DF+SFRA CQ+
Sbjct: 114 TARRYRYVIYNQRLRPAVLSQGVT-HFYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSR 172
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + +H+ N S+ G +Y V
Sbjct: 173 TPWRNV--MHI-----------------------NVSRFG----------------AYVV 191
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ +A +F++H VR IVG L VG G S + +L AK T A+ A A GL L V
Sbjct: 192 VDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVSVD 251
Query: 354 Y----DLPE 358
Y DLP+
Sbjct: 252 YPDRFDLPK 260
>gi|339326604|ref|YP_004686297.1| tRNA pseudouridine synthase A [Cupriavidus necator N-1]
gi|338166761|gb|AEI77816.1| tRNA pseudouridine synthase A [Cupriavidus necator N-1]
Length = 272
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 144/313 (46%), Gaps = 58/313 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + + Y G FSG Q Q + TV LE A +F G + +++ RTD GVHA
Sbjct: 1 MNRIALGLHYDGAAFSGWQSQPHRNTVQDHLENAIERFAGVRLLTTVAGRTDTGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D +R+P + R VN FL I + V FHARF A E
Sbjct: 61 VIHLDTAL--EREPFSWV---------RGVNAFLPPS--IALQWALPVDQGFHARFLAFE 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT---EELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
R Y+Y + +GP + + + + + LD+ AM+EA LVG HDFS+FRA+ CQA
Sbjct: 108 RMYYYALYTGPHRVPLVHGRAGYQMLPPGQRLDVDAMREAAACLVGEHDFSAFRAAECQA 167
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ ++ +I D G+ VF
Sbjct: 168 KSPVKTMYDV------------TIKDD------------------GNWVF---------- 187
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ RA +FL+H VR ++G L AVG G + ++L + A+P GL L VK
Sbjct: 188 LRFRASAFLHHMVRNLMGCLVAVGRGRYPAPWLAQVLAGRERKLAAPTFMPDGLYLVGVK 247
Query: 354 YDLPEDDQTDAAE 366
Y P+ Q AA+
Sbjct: 248 Y--PDPYQIPAAD 258
>gi|402833973|ref|ZP_10882580.1| tRNA pseudouridine(38-40) synthase [Selenomonas sp. CM52]
gi|402279042|gb|EJU28085.1| tRNA pseudouridine(38-40) synthase [Selenomonas sp. CM52]
Length = 258
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 134/306 (43%), Gaps = 66/306 (21%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
R + + V Y GT + G Q+Q R V VLEE G + ++ + RTDAGVHA
Sbjct: 12 RARNICLTVAYDGTAYHGFQRQSPPIRAVQNVLEEKLALVFGDAIELAAAGRTDAGVHAM 71
Query: 115 SNVCH------VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
V + + ERI R VLPP DI+V R DF
Sbjct: 72 GQVVNFFTDGRIPTERIV-RAMNSVLPP------------------DIVVKAAREEGRDF 112
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
AR A+ ++Y YRI G P + F + AW+V LDL AM EA +L+G HDFS+FRA
Sbjct: 113 SARHSAKSKSYIYRIQEGGTP-NPFSERYAWYVGTPLDLAAMNEAAALLLGTHDFSAFRA 171
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
+G P+RT ++ +E G + G R +
Sbjct: 172 AGGAPMLPVRT---MYSAE-------------------------------GRRIEGERIE 197
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
R + A FLYH R IVG L VG G T +D IL ++ AS APA GL
Sbjct: 198 FRFH-----ANGFLYHMARNIVGTLVDVGRGRRTRADFAAILASRERKRASATAPARGLF 252
Query: 349 LGFVKY 354
L V Y
Sbjct: 253 LESVVY 258
>gi|291042704|ref|ZP_06568449.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2]
gi|291013373|gb|EFE05335.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2]
Length = 265
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 140/307 (45%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ TV LE A + G+ V+ +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHAA+ V H D P + V R VN L EG I V R V FH
Sbjct: 60 GVHAAAQVVHFDTTAAR---------PQQAWV--RGVNAHL-PEG-IAVLHARQVAPGFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M+ A +LVG DFSSFR
Sbjct: 107 ARFDASGRHYRYLLESAPVRSPL---LKNRAGWTHLKLDIEPMRRAASLLVGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+GCQA SP++T+ +++ S L +D
Sbjct: 164 AAGCQAKSPVKTIYRTGLTQ-------------SAGLIRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|171463727|ref|YP_001797840.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|226708657|sp|B1XV49.1|TRUA_POLNS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|171193265|gb|ACB44226.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 276
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 147/310 (47%), Gaps = 72/310 (23%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQ------PVSISLSSRTDAGVH 112
R + ++Y G+ +SG Q Q+N TV LE+A F+G+ P++ + RTD GVH
Sbjct: 2 RIALGLQYDGSPYSGWQTQVNHNTVQNELEKAISAFVGEQACVVKPINTITAGRTDTGVH 61
Query: 113 AASNVCHVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHA 170
A V H D VER D S VR VN FL S I++ + V +F A
Sbjct: 62 ALGQVVHFDTNVER------------EDFSWVR-GVNSFLSS--SIVINWAKPVSEEFCA 106
Query: 171 RFRAQERTYFYRILSGP--EPLSVFEKDRAWHV----TEELDLRAMQEACKVLVGCHDFS 224
RF A ER Y Y + +GP P++ RA ++ ++ D+ AMQ++ + L+G HDFS
Sbjct: 107 RFSAYEREYIYALHAGPCRSPMA---HSRAGYLMLPPSQWFDIEAMQKSAECLIGEHDFS 163
Query: 225 SFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFG 284
SFR+S CQ+ +PI+T +++ E++S P L F
Sbjct: 164 SFRSSECQSKTPIKT---IYLIEIIS---------KQPWL-----------------YFR 194
Query: 285 IRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPA 344
I R +FL+H +R +VG +G G+ T + +L AK A+P A
Sbjct: 195 I-----------RGNAFLHHMIRNLVGCFLQIGQGKQTSQWMAEVLAAKNRQIAAPTFMA 243
Query: 345 CGLSLGFVKY 354
GL L + Y
Sbjct: 244 DGLYLAKITY 253
>gi|28212149|ref|NP_783093.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
gi|38258761|sp|Q890R5.1|TRUA2_CLOTE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|28204593|gb|AAO37030.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
Length = 248
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 145/307 (47%), Gaps = 61/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQL--NCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
M+ N R++ VEY GT +SG QKQ N +T+ +E+A + + V + SSRTD
Sbjct: 1 MARNVRLK-----VEYDGTNYSGWQKQKDKNIKTIQSSIEKAIEEATKEEVELIGSSRTD 55
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVHA + + + PGE + A+N FL DI++ + VP +F
Sbjct: 56 AGVHALAYTANF---KTCSTIPGEKF--------KHALNRFLPE--DIVILESEEVPMEF 102
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
H+RF +TY Y+IL+ P S +++ +HV +ELD+ +M EA K L+G HDF++F+
Sbjct: 103 HSRFDCIGKTYVYKILNRP-LFSPIQRNYIYHVKDELDINSMIEASKFLIGTHDFNAFKK 161
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
SG + +RT+ ++IN I K
Sbjct: 162 SGGNLKTTVRTI--------------TNIN--------------------------ILKS 181
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
+ E+ FLY+ VR+I G L VG D+ IL++K A APA GL
Sbjct: 182 NDIVEIHVSGDGFLYNMVRIISGTLIEVGLSRRKPEDISIILQSKDRCKAGMCAPARGLY 241
Query: 349 LGFVKYD 355
L + Y+
Sbjct: 242 LKELFYN 248
>gi|416269843|ref|ZP_11642558.1| tRNA pseudouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|420381228|ref|ZP_14880680.1| tRNA pseudouridine synthase A [Shigella dysenteriae 225-75]
gi|320174675|gb|EFW49808.1| tRNA pseudouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|391300544|gb|EIQ58461.1| tRNA pseudouridine synthase A [Shigella dysenteriae 225-75]
Length = 270
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 141/315 (44%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E P + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVHF-----------ETTVPRKDAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|385800537|ref|YP_005836941.1| tRNA pseudouridine synthase A [Halanaerobium praevalens DSM 2228]
gi|309389901|gb|ADO77781.1| tRNA pseudouridine synthase A [Halanaerobium praevalens DSM 2228]
Length = 248
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 145/301 (48%), Gaps = 58/301 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ Y I VEY G+ +SG Q+Q N +T+ +EEA K V I + RTDAGVHAA
Sbjct: 3 KNYKIIVEYDGSNYSGWQRQKNTEQTIQQKIEEALTKINKSQVKIDGAGRTDAGVHAAGQ 62
Query: 117 VCH--VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
+ +DVE +PP + A+N L DI+ V +FHAR+ A
Sbjct: 63 SANFFLDVE----------IPPTKIPI---ALNTELPD--DIICKKAIKVNQNFHARYDA 107
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ + Y YRIL+ SVF ++ ++V ++LDL+ MQ+A K+ G HDF+SF A+G
Sbjct: 108 RGKKYRYRILNSNFN-SVFVRNFVYNVYKKLDLKMMQKAAKIFEGSHDFASFCAAGSSVE 166
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
S +RT+ + + V DS + I + NG
Sbjct: 167 STVRTIRSIDIYAV----------DDSEIWLDI-------VGNG---------------- 193
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR++ G G G+ T+S++E IL++ A APA GL+L V Y
Sbjct: 194 ------FLYNMVRILAGTFIETGMGKKTLSELEVILQSCNRKNAGFTAPAQGLTLMEVFY 247
Query: 355 D 355
D
Sbjct: 248 D 248
>gi|397693259|ref|YP_006531139.1| tRNA pseudouridine synthase A [Pseudomonas putida DOT-T1E]
gi|397329989|gb|AFO46348.1| tRNA pseudouridine synthase A [Pseudomonas putida DOT-T1E]
Length = 284
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 133/301 (44%), Gaps = 63/301 (20%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G R+ G Q+Q + +V LE+A K +P+S+ + RTDAGVH V
Sbjct: 18 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 77
Query: 118 CHVDVERISKRKPGEVLP----PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + + + PHD SVV R +P+DFHARF+
Sbjct: 78 VHFDTRAVRDERAWTMGTNFNLPHDISVVWS-----------------RPMPADFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M EA + L+G HDFS+FRAS CQA
Sbjct: 121 ACARRYRYVIYNDPIRPAHLAEEVTWN-HRPLDVDRMAEAAQFLLGTHDFSAFRASQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ + L V+ +G V +
Sbjct: 180 KSPIKHVYHLRVTR-----------------------------HGQMIVLDV-------- 202
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL A+G GE V+ +L+ + A GL L V+
Sbjct: 203 ---RATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYLVQVE 259
Query: 354 Y 354
Y
Sbjct: 260 Y 260
>gi|337292758|emb|CCB90763.1| trNA pseudouridine synthase A 1 [Waddlia chondrophila 2032/99]
Length = 254
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 139/303 (45%), Gaps = 61/303 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+++Y + + Y GT++SG Q Q N ++ VLEE S++ + RTDAGVHA
Sbjct: 1 MKKYKLIIAYDGTQYSGWQMQPNALSIQEVLEEKLKVLTKTRTSLTGAGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H VE P + S++R ++N DI + DV VP DFHAR+ A
Sbjct: 61 VAHFKVE-----------APFNPSLLRLSLNG--LLPKDIRIMDVEEVPLDFHARYSATN 107
Query: 177 RTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSF---RASGC 231
+ Y+Y + GP +P FEK +W++T L++ +++ L+G H+FS+F G
Sbjct: 108 KIYYYHLNLGPVQDP---FEKQYSWNITNSLNMELLKKGISYLIGTHNFSAFANEANQGA 164
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
+PIRTL + V ++GM
Sbjct: 165 AKKNPIRTLKRISVV-----------------------PERIGM---------------- 185
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
+ SFLY VR + G L V G+L+ ++++IL++K A APA GL L
Sbjct: 186 -RLEFEGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGRAAPAKGLFLVR 244
Query: 352 VKY 354
+ Y
Sbjct: 245 IDY 247
>gi|424906318|ref|ZP_18329819.1| tRNA pseudouridine synthase A [Burkholderia thailandensis MSMB43]
gi|390928240|gb|EIP85645.1| tRNA pseudouridine synthase A [Burkholderia thailandensis MSMB43]
Length = 271
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 130/298 (43%), Gaps = 54/298 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + ++Y G F G Q Q + +TV LE A +F + +++ RTD GVH
Sbjct: 1 MMRIALGIQYDGAAFCGWQSQPHGKTVQDSLEAALAEFAQTSLHTTVAGRTDTGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D + L D S VR N FL S I V + +P FHARF A E
Sbjct: 61 VVHFDTD----------LDRADFSWVR-GTNAFLPST--IAVQWAKPMPDTFHARFAAYE 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY+Y + P + W V LD+ AM+EA LVG HDFS+FR+S CQA SP
Sbjct: 108 RTYYYALYVHPVRSPMLAGRTGW-VHTPLDIDAMREAAGHLVGEHDFSAFRSSECQAKSP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++ L ++ GIR
Sbjct: 167 VKHLYQI----------------------------------------GIRPDGDFIHFRF 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RA +FL+H VR ++G L AVG G S + +L+++ A+P GL L V Y
Sbjct: 187 RASAFLHHMVRNLMGCLVAVGRGRYPASWLADVLESRDRDCAAPTFMPEGLYLAHVGY 244
>gi|432441812|ref|ZP_19684152.1| tRNA pseudouridine synthase A [Escherichia coli KTE189]
gi|432446928|ref|ZP_19689227.1| tRNA pseudouridine synthase A [Escherichia coli KTE191]
gi|433014582|ref|ZP_20202929.1| tRNA pseudouridine synthase A [Escherichia coli KTE104]
gi|433024201|ref|ZP_20212188.1| tRNA pseudouridine synthase A [Escherichia coli KTE106]
gi|433323790|ref|ZP_20401121.1| tRNA pseudouridine synthase A [Escherichia coli J96]
gi|430966266|gb|ELC83674.1| tRNA pseudouridine synthase A [Escherichia coli KTE189]
gi|430973201|gb|ELC90169.1| tRNA pseudouridine synthase A [Escherichia coli KTE191]
gi|431530313|gb|ELI06994.1| tRNA pseudouridine synthase A [Escherichia coli KTE104]
gi|431535273|gb|ELI11654.1| tRNA pseudouridine synthase A [Escherichia coli KTE106]
gi|432347888|gb|ELL42345.1| tRNA pseudouridine synthase A [Escherichia coli J96]
Length = 270
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+R+ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DFSSFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFSSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|238916297|ref|YP_002929814.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750]
gi|238871657|gb|ACR71367.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750]
Length = 253
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 136/298 (45%), Gaps = 54/298 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R + V Y GT +SG Q Q T+ L++A + G+ V ++ +SRTDAGVHA N
Sbjct: 1 MRRIKLIVAYDGTEYSGWQIQPEAPTIEMCLDKAIRELTGENVHVTGASRTDAGVHAYGN 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D E PG+ A+N FL I++ D V DFH R
Sbjct: 61 VAVFDTE---STIPGDRFT--------FALNRFLPDS--IVIQDSWEVSGDFHPRHCNTR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+TY YRIL+ PL +++ WHVT +D+ M+EA +VG HDF SF QA S
Sbjct: 108 KTYEYRILNTVVPLPQ-KRNFTWHVTGSIDIEKMKEAAAYIVGEHDFKSFCCVRTQAEST 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RT+ L V + + S ++ I
Sbjct: 167 VRTIYSLEV-----------LQEGSEIIIRI----------------------------- 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+ FLY+ VR+I G L VG G V+++L+AK T A AP GL+L ++Y
Sbjct: 187 KGNGFLYNMVRIITGTLIQVGKGRFKPEYVKQMLEAKDRTVAGQTAPPQGLTLVGIEY 244
>gi|329900760|ref|ZP_08272580.1| tRNA pseudouridine synthase A [Oxalobacteraceae bacterium IMCC9480]
gi|327549402|gb|EGF33969.1| tRNA pseudouridine synthase A [Oxalobacteraceae bacterium IMCC9480]
Length = 267
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 134/303 (44%), Gaps = 58/303 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R ++ V+Y GT + G Q QL+ TV L++A KF ++ + RTD GVHA
Sbjct: 3 LKRLVLGVQYDGTPWHGWQTQLSGNTVQDRLQQALFKFTQSDITTHCAGRTDTGVHAIEQ 62
Query: 117 VCHVDVERISKRKPGEVLPPHD---SSVVRRAVNHFLQSEGDIMVTDVRCVPS-DFHARF 172
V H D P D SS VR H S T R P +FHARF
Sbjct: 63 VVHFDT-------------PLDRPISSWVRGLNTHLPPSIAVRWATVARLDPQHEFHARF 109
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
A+ RTY Y + + P ++ W V LDL M+EA + L+G HDF++FR++ CQ
Sbjct: 110 SARSRTYHYLLYNNPVRSPLWNDKAGW-VFRPLDLDRMREAAQSLIGTHDFTAFRSADCQ 168
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++ + E+ ++ +D ++ +
Sbjct: 169 AKSPVKMMHEIAITR-----------RDDLIVIKL------------------------- 192
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
A +FL+H VR +VG L VGTG V + ++ K A+P GL L +
Sbjct: 193 ----HANAFLHHMVRNLVGSLIYVGTGRQPVDWLSELILQKDRHLAAPTFSPDGLYLAKI 248
Query: 353 KYD 355
YD
Sbjct: 249 DYD 251
>gi|339486508|ref|YP_004701036.1| tRNA pseudouridine synthase A [Pseudomonas putida S16]
gi|338837351|gb|AEJ12156.1| tRNA pseudouridine synthase A [Pseudomonas putida S16]
Length = 284
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 133/302 (44%), Gaps = 57/302 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G R+ G Q+Q + +V LE+A K +P+S+ + RTDAGVH +
Sbjct: 18 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICAGRTDAGVHGCGQI 77
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + D N L DI V R +P+DFHARF+A R
Sbjct: 78 VHFDTRAVR-----------DERAWTMGTNFNLPH--DISVVWARPMPADFHARFKACAR 124
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y I + P + ++ W+ LD+ M EA + L+G HDFS+FRAS CQA SPI
Sbjct: 125 RYRYVIYNDPIRPAHLAEEVTWN-HRPLDVERMAEAAQYLLGTHDFSAFRASQCQAKSPI 183
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+ + L V+ +G V + R
Sbjct: 184 KHIYHLRVTR-----------------------------HGQMIVLDV-----------R 203
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +FL+H VR I GVL +G GE V+ +L+ + A GL L V+ + P
Sbjct: 204 ATAFLHHMVRNIAGVLMTIGAGERPVTWAREVLEGRNRREGGVTAHPYGLYL--VQVEYP 261
Query: 358 ED 359
E+
Sbjct: 262 EE 263
>gi|429334214|ref|ZP_19214886.1| tRNA pseudouridine synthase A [Pseudomonas putida CSV86]
gi|428761052|gb|EKX83294.1| tRNA pseudouridine synthase A [Pseudomonas putida CSV86]
Length = 291
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 134/302 (44%), Gaps = 57/302 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY GTR+ G Q+Q + +V LEEA K +P+++ + RTDAGVHA+ V
Sbjct: 18 RIALGVEYKGTRYRGWQRQGDGVLSVQQTLEEALSKVAAEPITVQCAGRTDAGVHASGQV 77
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D I D+ N L DI V+ +P+ FHARF+A R
Sbjct: 78 VHFDTRAIR-----------DAKAWTMGANSHLPH--DISVSWAERMPAHFHARFKAFAR 124
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y I + + W+ LD+ M EA + L+G HDFS+FRA CQA SPI
Sbjct: 125 RYRYVIYNDQIRPAHLGDQVTWN-HRPLDVERMAEAARCLLGTHDFSAFRAGQCQAKSPI 183
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+T+ L V+ +G V I R
Sbjct: 184 KTIHHLRVTR-----------------------------HGKMIVLDI-----------R 203
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +FL+H VR I GVL +G GE V +IL + A+ A GL L V+ + P
Sbjct: 204 ASAFLHHMVRNIAGVLMTIGAGERPVEWAAQILASLDRRQAAATAHPFGLYL--VQVEYP 261
Query: 358 ED 359
E+
Sbjct: 262 EE 263
>gi|392980084|ref|YP_006478672.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326017|gb|AFM60970.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 270
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 139/309 (44%), Gaps = 60/309 (19%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
K + + + +EY G+++ G Q+Q R+V LE+A + +P+++ + RTDAGVH
Sbjct: 7 KPVHKVALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVLCAGRTDAGVHGT 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H + + K + VN L GDI V V+ VP DFHARF A
Sbjct: 67 GQVVHFETTAVRK-----------DAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSA 113
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I + +V + H E LD M A + L+G +DF+SFRA CQ+
Sbjct: 114 TARRYRYVIYNQRLRPAVLSQGVT-HFYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSR 172
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + ++VS FG +Y V
Sbjct: 173 TPWRNVMHINVSR-----------------------------------FG------AYVV 191
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ +A +F++H VR IVG L VG G S + +L AK T A+ A A GL L V
Sbjct: 192 VDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVSVD 251
Query: 354 Y----DLPE 358
Y DLP+
Sbjct: 252 YPDRFDLPK 260
>gi|195490008|ref|XP_002092963.1| GE26463, isoform B [Drosophila yakuba]
gi|194179064|gb|EDW92675.1| GE26463, isoform B [Drosophila yakuba]
Length = 306
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 157/335 (46%), Gaps = 71/335 (21%)
Query: 57 IQRYLIAVEYIGTRFSGSQK--------QLNCRTVVGVLEEAFHKFIGQPVS---ISLSS 105
+ RYL+ + YIGT F G QK +L+ +V G LE A F P++ LSS
Sbjct: 1 MNRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALRVF--HPINEIQTVLSS 58
Query: 106 RTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCV 164
RTDAGVHA + VD+ER + + P+D++ + +N L +G I V + V
Sbjct: 59 RTDAGVHALHSTVQVDLERPNGQ-------PYDTTTLTGVLNRTLNKQGLPIRVLSSKLV 111
Query: 165 PSDFHARFRAQERTYFYRILSGPEP---------------LSVFEKDRAWHV-TEELDLR 208
+ FH R+ A RTY YR +P + V E DR + + + D+
Sbjct: 112 SNSFHCRYHAIGRTYLYRFAVAKDPSLEDCNLRNKAYETFIPVEEIDRCYFLQSSSFDIN 171
Query: 209 AMQEACKVLVGCHDFSSFRASGCQANS------PIRTLDELHVSEVVSTALFSSINQDSP 262
+Q A ++ +G HDF +F + Q S +R +DE+++ + AL SS
Sbjct: 172 RVQAAARMFIGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSS-----A 226
Query: 263 VLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELT 322
+L++ + + +++ +A+SFLY QVR IVG L A+G G +
Sbjct: 227 ILAA--------------------ETYNYWDIEIKAKSFLYKQVRRIVGALIALGNGRID 266
Query: 323 VSDVERILKAKTVTAASP---MAPACGLSLGFVKY 354
+ ++L + + P +APACGL L V Y
Sbjct: 267 ERCLYQMLTVPSKNSWDPRILLAPACGLYLCKVHY 301
>gi|334143716|ref|YP_004536872.1| tRNA pseudouridine synthase A [Thioalkalimicrobium cyclicum ALM1]
gi|333964627|gb|AEG31393.1| tRNA pseudouridine synthase A [Thioalkalimicrobium cyclicum ALM1]
Length = 260
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 131/302 (43%), Gaps = 56/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY+GT + G Q+Q +C +V G LE+A + + + + RTDAGVH
Sbjct: 1 MHRWALGIEYVGTAYCGWQRQGHCDSVQGQLEKALSTIAQETIDVHCAGRTDAGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D + I PH + V + N Q DI VT V FHARF AQ
Sbjct: 61 VVHFDTQSIR---------PHSAWV--QGAN--TQLPRDIRVTWAHQVDEGFHARFSAQA 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y I + +P ++ W LD +AM A + L+G DFSSFRA+ CQA
Sbjct: 108 RQYRYVIYNRAQPSALLYGRTYWE-RHPLDAKAMNIAGQALLGEQDFSSFRAAQCQAQHG 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
R + L VS ++ +
Sbjct: 167 QRNIQLLCVS----------------------------------------RREDFVHIDI 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
+A +F++H VR I G L +G G+ +S +L K T A APA GL FVK
Sbjct: 187 KANAFVHHMVRNIAGTLMQIGRGDKPISWAGELLALKDRTQAYATAPAEGLY--FVKAFY 244
Query: 357 PE 358
PE
Sbjct: 245 PE 246
>gi|398842598|ref|ZP_10599776.1| pseudouridylate synthase I [Pseudomonas sp. GM102]
gi|398105546|gb|EJL95637.1| pseudouridylate synthase I [Pseudomonas sp. GM102]
Length = 284
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 138/309 (44%), Gaps = 67/309 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLLCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + + W+ LD+ M EA + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNDEITWN-HRPLDVERMSEAARYLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ L L V+ +G V I
Sbjct: 180 KSPIKELHHLRVTR-----------------------------HGKMIVLDI-------- 202
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL +G GE V ++ +L+++ + A GL L V+
Sbjct: 203 ---RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRSGGVTAHPFGLYLVQVE 259
Query: 354 Y----DLPE 358
Y +LPE
Sbjct: 260 YRDEFELPE 268
>gi|401764592|ref|YP_006579599.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400176126|gb|AFP70975.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 270
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 140/309 (45%), Gaps = 60/309 (19%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
K + + + +EY G+++ G Q+Q R+V LE+A + +P+++ + RTDAGVH
Sbjct: 7 KPVHKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVLCAGRTDAGVHGT 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H + + K + VN L GDI V V+ VP DFHARF A
Sbjct: 67 GQVVHFETTAVRK-----------DAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSA 113
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I + +V + H E LD M A + L+G +DF+SFRA CQ+
Sbjct: 114 TARRYRYVIYNQRLRPAVLSQGVT-HFYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSR 172
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + +H+ N S+ G +Y V
Sbjct: 173 TPWRNV--MHI-----------------------NVSRFG----------------AYVV 191
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ +A +F++H VR IVG L VG G S + +L AK T A+ A A GL L V
Sbjct: 192 VDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIADLLAAKDRTLAAATAKAEGLYLVAVD 251
Query: 354 Y----DLPE 358
Y DLP+
Sbjct: 252 YPDRFDLPK 260
>gi|90021726|ref|YP_527553.1| pseudouridylate synthase [Saccharophagus degradans 2-40]
gi|89951326|gb|ABD81341.1| tRNA pseudouridine synthase A [Saccharophagus degradans 2-40]
Length = 289
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 136/307 (44%), Gaps = 60/307 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
++R ++ VEY G+ + G Q+QL TV LE+A +PV+I + RTDAGVHA S
Sbjct: 22 MRRVVLQVEYDGSPYCGFQRQLTAPNTVQAELEKALSSVANEPVTIVCAGRTDAGVHATS 81
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
+ H D L S + VN L I V + V DFHARF A
Sbjct: 82 QIVHFDT-----------LAGRPSKAWLQGVNTHLPF--SIRVISAKEVGFDFHARFSAL 128
Query: 176 ERTYFYRILSGPEPLSVFEKDRAW----HVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
RTY Y I + W LD+ AMQEA +L+G HDF+SFR C
Sbjct: 129 SRTYRYVIHVSQVRSAHLVNGVTWVKLPQKLSGLDVPAMQEAASLLLGEHDFTSFRTVHC 188
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
QA SP+RT++ V++VV F +
Sbjct: 189 QAASPVRTME---VADVVQMGEFIVVQ--------------------------------- 212
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
A +FL+H VR IVGVL VG GEL S V +++ + + A+ APA GL F
Sbjct: 213 ----VTANAFLHHMVRNIVGVLLRVGRGELKPSRVTELIELRDRSQAAETAPAAGLY--F 266
Query: 352 VKYDLPE 358
V PE
Sbjct: 267 VNVQYPE 273
>gi|297620615|ref|YP_003708752.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044]
gi|297375916|gb|ADI37746.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044]
Length = 254
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 139/303 (45%), Gaps = 61/303 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+++Y + + Y GT++SG Q Q N ++ VLEE S++ + RTDAGVHA
Sbjct: 1 MKKYKLIIAYDGTQYSGWQMQPNALSIQEVLEEKLKVLTKTRTSLTGAGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H VE P + S++R ++N DI + DV VP DFHAR+ A
Sbjct: 61 VAHFKVE-----------APFNPSLLRLSLNG--LLPKDIRIMDVEEVPLDFHARYSATN 107
Query: 177 RTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSF---RASGC 231
+ Y+Y + GP +P FEK +W++T L++ +++ L+G H+FS+F G
Sbjct: 108 KIYYYHLNLGPVQDP---FEKQYSWNITNSLNMELLKKGISYLIGTHNFSAFANEANQGA 164
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
+PIRTL + V ++GM
Sbjct: 165 AKKNPIRTLKRISVV-----------------------PERIGM---------------- 185
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
+ SFLY VR + G L V G+L+ ++++IL++K A APA GL L
Sbjct: 186 -RLEFEGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGRAAPAKGLFLVR 244
Query: 352 VKY 354
+ Y
Sbjct: 245 IDY 247
>gi|268604599|ref|ZP_06138766.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1]
gi|268685331|ref|ZP_06152193.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679]
gi|268588730|gb|EEZ53406.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1]
gi|268625615|gb|EEZ58015.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679]
Length = 265
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 140/307 (45%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ TV LE A + G+ V+ +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHAA+ V H D P + V R VN L EG I V R V FH
Sbjct: 60 GVHAAAQVVHFDTTAAR---------PQQAWV--RGVNAHL-PEG-IAVLHARQVAPGFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M+ A +LVG DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESAPVRSPL---LKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+GCQA SP++T+ +++ S L +D
Sbjct: 164 AAGCQAKSPVKTIYRAGLTQ-------------SAGLIRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|167577247|ref|ZP_02370121.1| tRNA pseudouridine synthase A [Burkholderia thailandensis TXDOH]
Length = 270
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 130/296 (43%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + ++Y G F G Q Q + +TV LE A +F + +++ RTD GVH V
Sbjct: 2 RIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + L D S VR N FL S + V + +P FHARF A ERT
Sbjct: 62 HFDTD----------LDRADFSWVR-GTNAFLPST--VAVQWAKPMPDTFHARFAAFERT 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y+Y + P + W V LD+ AM+EA + LVG HDFS+FR+S CQA SP++
Sbjct: 109 YYYALYVHPVRSPMLAARAGW-VHTPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
L ++ GIR RA
Sbjct: 168 HLYQI----------------------------------------GIRPDGDFIHFRFRA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR ++G L AVG G S + +L+++ A+P GL L V Y
Sbjct: 188 NAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLESRDRDCAAPTFMPEGLYLAHVGY 243
>gi|379726769|ref|YP_005318954.1| tRNA pseudouridine synthase A [Melissococcus plutonius DAT561]
gi|376317672|dbj|BAL61459.1| tRNA pseudouridine synthase A [Melissococcus plutonius DAT561]
Length = 257
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 137/298 (45%), Gaps = 54/298 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAASNV 117
RY + Y GT F+G Q Q+N RTV LE+ +K Q ++I S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTNFNGFQSQINGRTVQDELEKTLYKLNNNQSITIFGSGRTDAGVHALGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + D +R A++ QS DI V + V ++FHAR+ E+
Sbjct: 63 IHFDYPK-----------ARDVEKLRFALD--TQSPADISVKKIEEVSNNFHARYHVIEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY ++I +G + F + A + +DL +++A L+G HDF+SF A+GC +S I
Sbjct: 110 TYQFKIDTG-KTRDPFRRFYASYFPHSIDLAKIEKALPDLLGEHDFTSFCAAGCSVDSKI 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ E VS+ ++D + + R
Sbjct: 169 RTIYEASVSQT---------SEDEIIFT------------------------------FR 189
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY VR+IVG L +G G++ + + I+ K A P A GL L V Y+
Sbjct: 190 GNGFLYKMVRIIVGTLLKIGQGKIKETAIPEIIAGKNRRLAGPTAHPEGLYLVQVIYE 247
>gi|118497491|ref|YP_898541.1| tRNA pseudouridine synthase A [Francisella novicida U112]
gi|195536184|ref|ZP_03079191.1| tRNA pseudouridine synthase A [Francisella novicida FTE]
gi|254372827|ref|ZP_04988316.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
novicida GA99-3549]
gi|166228699|sp|A0Q6C2.1|TRUA_FRATN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|118423397|gb|ABK89787.1| tRNA pseudouridine synthase A [Francisella novicida U112]
gi|151570554|gb|EDN36208.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3549]
gi|194372661|gb|EDX27372.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
novicida FTE]
Length = 258
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 142/304 (46%), Gaps = 60/304 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + +V LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGRNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VCHV--DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
+ + D ER S +R VN L DI + V+ V ++F++RF A
Sbjct: 61 IVNFYSDAER-------------PLSAWQRGVNALLPQ--DIKILAVQQVDNNFNSRFTA 105
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
RTY Y I + +F + W ELD+ M +AC+ L+G DFSSFR+S CQ+N
Sbjct: 106 INRTYNYIIYNSATSSPIFAEHCLWE-NRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN 164
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + + I Q S ++ +EV
Sbjct: 165 TPFRNIQKAEF-----------IKQGSFIV---------------------------FEV 186
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+ A FL+H +R +VG L VG G + ++ +L+AK T A+ A A GL FV
Sbjct: 187 VGNA--FLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY--FVGV 242
Query: 355 DLPE 358
+ PE
Sbjct: 243 EYPE 246
>gi|118476179|ref|YP_893330.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al
Hakam]
gi|228925681|ref|ZP_04088768.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931917|ref|ZP_04094811.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228944241|ref|ZP_04106617.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229089549|ref|ZP_04220816.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-42]
gi|229120089|ref|ZP_04249341.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 95/8201]
gi|118415404|gb|ABK83823.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al
Hakam]
gi|228663327|gb|EEL18915.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 95/8201]
gi|228693765|gb|EEL47461.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-42]
gi|228815392|gb|EEM61637.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228827702|gb|EEM73442.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228833956|gb|EEM79506.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 250
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 56/305 (18%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M NK + Y + ++Y G RF G Q+ N T+ G +E + IG+ + I SRTDA
Sbjct: 1 MKENK-MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDA 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V + + E L H V++ +N +L + DI +T+V V FH
Sbjct: 60 GVHALNQVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVHDRFH 106
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
AR+ ++ +TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F +
Sbjct: 107 ARYNSKAKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNA 165
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
+ S +R E++ EV+ A F I
Sbjct: 166 KSKKKSMVR---EVYSLEVMEEAGFVQIR------------------------------- 191
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FL++ VR IVG L VG G+L + +IL+AK + +A A GL L
Sbjct: 192 ------VSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGLYL 245
Query: 350 GFVKY 354
V++
Sbjct: 246 ENVEF 250
>gi|83718190|ref|YP_438876.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264]
gi|167621345|ref|ZP_02389976.1| tRNA pseudouridine synthase A [Burkholderia thailandensis Bt4]
gi|257141962|ref|ZP_05590224.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264]
gi|123753984|sp|Q2T7H3.1|TRUA_BURTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|83652015|gb|ABC36079.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264]
Length = 270
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 130/296 (43%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + ++Y G F G Q Q + +TV LE A +F + +++ RTD GVH V
Sbjct: 2 RIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + L D S VR N FL S + V + +P FHARF A ERT
Sbjct: 62 HFDTD----------LDRADFSWVR-GTNAFLPST--VAVQWAKPMPDTFHARFAAFERT 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y+Y + P + W V LD+ AM+EA + LVG HDFS+FR+S CQA SP++
Sbjct: 109 YYYALYVHPVRSPMLAARAGW-VHTPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
L ++ GIR RA
Sbjct: 168 HLYQI----------------------------------------GIRPDGDFIHFRFRA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR ++G L AVG G S + +L+++ A+P GL L V Y
Sbjct: 188 NAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLESRDRGCAAPTFMPEGLYLAHVGY 243
>gi|401678070|ref|ZP_10810040.1| tRNA pseudouridine synthase A [Enterobacter sp. SST3]
gi|400214678|gb|EJO45594.1| tRNA pseudouridine synthase A [Enterobacter sp. SST3]
Length = 270
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 139/309 (44%), Gaps = 60/309 (19%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
K + + + +EY G+++ G Q+Q R+V LE+A + +P+++ + RTDAGVH
Sbjct: 7 KPVHKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVLCAGRTDAGVHGT 66
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H + + K + VN L GDI V V+ VP DFHARF A
Sbjct: 67 GQVVHFETTAVRK-----------DAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSA 113
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I + +V + H E LD M A + L+G +DF+SFRA CQ+
Sbjct: 114 TARRYRYVIYNQRLRPAVLSQGVT-HFYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSR 172
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + ++VS FG +Y V
Sbjct: 173 TPWRNVMHINVSR-----------------------------------FG------AYVV 191
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ +A +F++H VR IVG L VG G S + +L AK T A+ A A GL L V
Sbjct: 192 VDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIADLLAAKDRTLAAATAKAEGLYLVSVD 251
Query: 354 Y----DLPE 358
Y DLP+
Sbjct: 252 YPDRFDLPK 260
>gi|320548017|ref|ZP_08042298.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812]
gi|320447363|gb|EFW88125.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812]
Length = 249
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 127/298 (42%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y G F+G Q+Q + R+V LE+ K G PV + + RTD+GVHA V
Sbjct: 3 RYKATISYDGGLFAGFQRQPSERSVQEELEKTLQKLNSGTPVKVHGAGRTDSGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ P V + QS DI V V V DFH+R+ +
Sbjct: 63 VHFDL-------------PQARDVEKLRFGLDTQSPEDIDVVKVELVSDDFHSRYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + + A H LDL MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ +++D K G +
Sbjct: 169 RTITR----------------------ATVDIDEKTGF----------------FVFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS ++ +L++K A P A GL L + YD
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGNGLYLKEIIYD 248
>gi|187933357|ref|YP_001884507.1| tRNA pseudouridine synthase A [Clostridium botulinum B str. Eklund
17B]
gi|238691608|sp|B2TIK9.1|TRUA_CLOBB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|187721510|gb|ACD22731.1| tRNA pseudouridine synthase A [Clostridium botulinum B str. Eklund
17B]
Length = 244
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 135/293 (46%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +E+ GT F G Q+Q+ RTV G LE+A K G+ + SSRTD GVHA + V +
Sbjct: 6 LIIEFDGTNFCGWQRQIKDRTVQGCLEKAILKITGEKSLTNGSSRTDGGVHAKAMVANFI 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ PGE R A+N L DI V V DFHAR+ ++ + Y Y
Sbjct: 66 T---NSSIPGEKF--------REALNTKLPD--DIAVIKSEEVDMDFHARYSSKGKMYSY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I++ E LS F K HV +EL++ M++AC+ +G HDF +F + G A + +RT+
Sbjct: 113 TIVNRYEKLS-FGKQYVHHVRKELNVEDMKKACECFIGKHDFKAFMSPGSSAKTTVRTIQ 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
E ++ + N+D ++ A F
Sbjct: 172 EFYIEK----------NED------------------------------VIKIFISADGF 191
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+IVG L +GTG+ + DV+ I+ + P GL L V Y
Sbjct: 192 LYNMVRIIVGTLINIGTGKTKLEDVDNIINDGIRKRSGMCVPPNGLVLEKVFY 244
>gi|116511297|ref|YP_808513.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
SK11]
gi|385839085|ref|YP_005876715.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
A76]
gi|414073743|ref|YP_006998960.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
UC509.9]
gi|123320604|sp|Q031N1.1|TRUA_LACLS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116106951|gb|ABJ72091.1| Pseudouridylate synthase [Lactococcus lactis subsp. cremoris SK11]
gi|358750313|gb|AEU41292.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
A76]
gi|413973663|gb|AFW91127.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 253
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 131/300 (43%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F+G Q Q N RTV +E+ K +PV + S RTD+GVHA
Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ ++ D +R ++ Q+ DI V V VP D+HAR++
Sbjct: 61 QVIHFDLNGKAR----------DLERLRFGLD--TQTPADIAVKKVELVPDDWHARYQKH 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY Y L S F + + L+ MQ A LVG HDF+ F ASG +
Sbjct: 109 EKTYEY-YLENSVTRSPFHRHSKAYFRYPLNFELMQGAMAKLVGQHDFTGFTASGSSVDD 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ + + I+ +++ I
Sbjct: 168 KVRTIYQAEI---------------------------------------IQLDKENFKFI 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY QVR +VG + +G + VS +++IL +K A P A GL L VKY+
Sbjct: 189 FRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGPTAAPEGLYLKEVKYE 248
>gi|384214927|ref|YP_005606091.1| tRNA pseudouridine synthase I [Bradyrhizobium japonicum USDA 6]
gi|354953824|dbj|BAL06503.1| tRNA pseudouridine synthase I [Bradyrhizobium japonicum USDA 6]
Length = 245
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 133/298 (44%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE A G + + + RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+++ PP R +N L+ I V + VP F ARF A +
Sbjct: 61 VAHVDIDK--------QFPP---GRFRDGLNAHLRPH-PIAVLEAEIVPDTFEARFSAVK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YR+++ L++ + AW V LD AM A + L+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRVVNTRANLAL-DIGHAWRVPRRLDADAMHAAAQRLLGKHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V + R ++
Sbjct: 168 EKTLDQLDVL----------------------------------------RDGREITIVT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G T D+ L A+ A +AP GL L V Y
Sbjct: 188 SARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLYLMKVDY 245
>gi|94311405|ref|YP_584615.1| tRNA pseudouridine synthase A [Cupriavidus metallidurans CH34]
gi|93355257|gb|ABF09346.1| pseudouridylate synthase I [Cupriavidus metallidurans CH34]
Length = 278
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 145/314 (46%), Gaps = 60/314 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R I + Y G+ +SG Q Q + TV LE+A +F G + +++ RTDAGVHA
Sbjct: 3 VNRIAIGLHYDGSAYSGWQSQPHRNTVQDHLEDAIERFAGVRLLTTVAGRTDAGVHALGQ 62
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D E R S V R VN FL I + V +FHARF A E
Sbjct: 63 VIHLDTELDRDR----------FSWV-RGVNAFLPPS--IALQWAEPVDENFHARFLAYE 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
R Y+Y + +GP + RA ++ + LD AM+ A L+G HDFS+FRA+ CQ
Sbjct: 110 RMYYYALYTGPHRAPMIHG-RAGYLMLPHGQRLDTEAMRRASACLLGEHDFSAFRAAECQ 168
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
A SP++T+ ++ +I D G+ VF
Sbjct: 169 AKSPVKTMYDV------------TIEAD------------------GNWVF--------- 189
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
+ RA +FL+H VR ++G L AVG G + +L+ + A+P GL L V
Sbjct: 190 -LRFRASAFLHHMVRNLMGCLVAVGRGRYPAEWMAEVLEGRNRQKAAPTFMPDGLYLVDV 248
Query: 353 KYDLPEDDQTDAAE 366
KY PE Q A+
Sbjct: 249 KY--PEPYQLPKAD 260
>gi|163847952|ref|YP_001635996.1| tRNA pseudouridine synthase ACD [Chloroflexus aurantiacus J-10-fl]
gi|222525832|ref|YP_002570303.1| tRNA pseudouridine synthase ACD [Chloroflexus sp. Y-400-fl]
gi|189030130|sp|A9WH95.1|TRUA_CHLAA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254789612|sp|B9LJG1.1|TRUA_CHLSY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|163669241|gb|ABY35607.1| tRNA pseudouridine synthase A [Chloroflexus aurantiacus J-10-fl]
gi|222449711|gb|ACM53977.1| tRNA pseudouridine synthase A [Chloroflexus sp. Y-400-fl]
Length = 278
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 129/293 (44%), Gaps = 50/293 (17%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ + Y GT F+GSQ Q + RTV G LE A+ + I L+ RTDAGVHA V HV
Sbjct: 6 LLLAYDGTDFAGSQWQTDIRTVQGALESAWEALTQERRRIVLAGRTDAGVHATGQVAHV- 64
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ H+ + R +N L D+ + +V DFHARF A +R Y Y
Sbjct: 65 ----------QTTTRHNLQTIWRGLNAHLPV--DLAIQNVGEAVPDFHARFSAIQREYRY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I PL + + H LD+ AM A K+L G HDF++F + S +RT+
Sbjct: 113 LIDCAAAPLPQL-RHQVLHYAGTLDVAAMTAALKLLEGTHDFAAFTTATPAQRSTVRTMY 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
V G F ++ + EV A A F
Sbjct: 172 WTRV--------------------------------GDYEWF--ERRLLAIEVAANA--F 195
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
L H VR+IVG L VG G +TV +L ++ A P APA GL+L V+Y
Sbjct: 196 LQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPAHGLTLTAVRY 248
>gi|322374222|ref|ZP_08048755.1| tRNA pseudouridine synthase A [Streptococcus sp. C150]
gi|321276927|gb|EFX53999.1| tRNA pseudouridine synthase A [Streptococcus sp. C150]
Length = 248
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 132/298 (44%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q + R++ +E+ + G PV + + RTDAGVHA V
Sbjct: 3 RYKAIISYDGTLFSGFQRQPDARSIQEEIEKTLLRLNSGTPVVVHGAGRTDAGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + +R P ++ D+ Q DI + + V DFHAR+ +
Sbjct: 63 IHFDLPQ--ERDPEKLRFGLDT-----------QCPDDIDIVSIELVSEDFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA K LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQARVS--------------------------------------IDEKTGFYVFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + +S V+ +L++ A P A GL L +KY+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPISQVKTVLESCDRNLAGPTASGNGLYLKEIKYE 248
>gi|313895792|ref|ZP_07829346.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975217|gb|EFR40678.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 266
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 141/317 (44%), Gaps = 64/317 (20%)
Query: 49 EVMSTNKRIQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRT 107
E+M R + + + Y GTR+ G Q+Q L V VLE+ + G+ V ++ + RT
Sbjct: 7 EIMKA--RARNIALRLSYDGTRYHGFQRQSLPVVAVQNVLEKVLAEVCGESVELAAAGRT 64
Query: 108 DAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSD 167
D GVHA V + + R P LP RAVN L DI V D
Sbjct: 65 DTGVHAYGQVVNFFTD---GRIPVAQLP--------RAVNGLLPP--DIAVMAAWEAERD 111
Query: 168 FHARFRAQERTYFYRI--LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSS 225
F AR + + Y YRI + P P F ++ AW + LD+ AM+ ++LVG HD+SS
Sbjct: 112 FSARHSSTGKAYLYRIERCTVPNP---FTRNYAWQIFRPLDVAAMRTVLRLLVGTHDYSS 168
Query: 226 FRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGI 285
FRA+G SP+RTLDE+ + E ++ LS + NG
Sbjct: 169 FRAAGGAPMSPVRTLDEIRLDE-----------EEGGQLSCYMHG------NG------- 204
Query: 286 RKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPAC 345
FLYH VR I+ + VG G ++ I A ASP APAC
Sbjct: 205 ---------------FLYHMVRNIMSTVVHVGLGRISTDRFTEIFAAHDRRLASPTAPAC 249
Query: 346 GLSLGFVKY----DLPE 358
GL L V Y D+P+
Sbjct: 250 GLYLLHVDYAGRTDVPD 266
>gi|256855196|ref|ZP_05560557.1| tRNA pseudouridine synthase [Enterococcus faecalis T8]
gi|307291679|ref|ZP_07571554.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411]
gi|422686450|ref|ZP_16744647.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000]
gi|256709709|gb|EEU24756.1| tRNA pseudouridine synthase [Enterococcus faecalis T8]
gi|306497298|gb|EFM66840.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411]
gi|315028842|gb|EFT40774.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000]
Length = 249
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 135/302 (44%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F G QKQ N RTV +EE + G V++ S RTDAGVHA
Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEETLARMNNGHSVTVFGSGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + +P E + R A++ Q+ DI V V V DFHAR+
Sbjct: 61 QVIHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARYHVI 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG
Sbjct: 108 EKTYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVED 166
Query: 236 PIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ E +HV+E F+
Sbjct: 167 KVRTIHEASVHVNETGDELTFT-------------------------------------- 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY +R++VG L +G G L + + I+ AK A P A GL L VK
Sbjct: 189 --FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVK 246
Query: 354 YD 355
Y+
Sbjct: 247 YE 248
>gi|432765702|ref|ZP_20000140.1| tRNA pseudouridine synthase A [Escherichia coli KTE48]
gi|431309877|gb|ELF98070.1| tRNA pseudouridine synthase A [Escherichia coli KTE48]
Length = 270
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 144/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|398862072|ref|ZP_10617685.1| pseudouridylate synthase I [Pseudomonas sp. GM79]
gi|398231346|gb|EJN17337.1| pseudouridylate synthase I [Pseudomonas sp. GM79]
Length = 284
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 138/309 (44%), Gaps = 67/309 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLLCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + + W+ LD+ M EA + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNDEITWN-HRPLDVERMSEAAQYLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ L L V+ +G V I
Sbjct: 180 KSPIKELHHLRVTR-----------------------------HGKMIVLDI-------- 202
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL +G GE V ++ +L+++ + A GL L V+
Sbjct: 203 ---RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRSGGVTAHPFGLYLVQVE 259
Query: 354 Y----DLPE 358
Y +LPE
Sbjct: 260 YRDEFELPE 268
>gi|332798239|ref|YP_004459738.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
gi|332695974|gb|AEE90431.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
Length = 243
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 133/295 (45%), Gaps = 58/295 (19%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
I +EY GT +SG Q+Q N ++ VLE A G+ V++ S RTDAGVHA V +
Sbjct: 5 ILLEYEGTAYSGWQRQKNAISIQEVLENAIKSITGEAVNVIGSGRTDAGVHALGQVANFK 64
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ + P E LP A+N L DI+V VP DFHARF A+ + Y Y
Sbjct: 65 TQ---TKIPIEKLP--------YAINSKLPE--DIVVKHAEIVPEDFHARFWAKAKIYTY 111
Query: 182 RILSG--PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRT 239
I + P PL K ++ L++RAM++A +L+G HDF+SF AS S +R
Sbjct: 112 TIYNAKFPSPLL---KRYSYFYPRPLNVRAMKKAADMLIGTHDFASFMASNSPVKSTVRC 168
Query: 240 LDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARAR 299
++ L V + NG F I A
Sbjct: 169 IERLEVFQ-----------------------------NGDIVKFEI-----------EAN 188
Query: 300 SFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+I G L VG + +D+ I+K+K + A P GL L V Y
Sbjct: 189 GFLYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGKTLPPQGLCLIKVIY 243
>gi|85860424|ref|YP_462626.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB]
gi|85723515|gb|ABC78458.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB]
Length = 328
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 134/297 (45%), Gaps = 55/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
+Y + +EY GT +SG Q Q N +++ G L +G PV I + RTDAGVHA + V
Sbjct: 66 KYRLTLEYDGTGYSGWQMQKNAKSIQGTLLRVAEDLLGGPVDIQGAGRTDAGVHALAQVA 125
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H++ R +PP + +N L S I + V P FHAR AQ R+
Sbjct: 126 HLETTR--------RMPPRK---LLEGLNDALPS--SINILRVEEAPPLFHARHSAQLRS 172
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y ++SG + F K W + + L+L+ MQ A ++ G HDFSSF +P R
Sbjct: 173 YLY-VISGHR--TAFGKRYVWWIRDHLELKKMQAASRLFAGFHDFSSFADKRMDKQAPTR 229
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
+V +T L +S G F + H
Sbjct: 230 V-------KVEATELHAS---------------------GDLIFFRVTGSH--------- 252
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FL+ VR +VGV+ VG +L +SDV ++LK+ + A AP GL L V Y+
Sbjct: 253 --FLWKMVRRMVGVMVEVGREKLDISDVRQMLKSYSPEPARLTAPPSGLYLERVLYE 307
>gi|293398170|ref|ZP_06642375.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae F62]
gi|291611433|gb|EFF40503.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae F62]
Length = 265
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 140/307 (45%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ TV LE A + G+ V+ +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHAA+ V H D P + V R VN L EG I V R V FH
Sbjct: 60 GVHAAAQVVHFDTTAAR---------PQQAWV--RGVNAHL-PEG-IAVLHARQVAPGFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M+ A +L+G DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESAPVRSPLL---KNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+GCQA SP++T+ +++ S L +D
Sbjct: 164 AAGCQAKSPVKTIYRAGLTQ-------------SAGLIRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|398914714|ref|ZP_10657013.1| pseudouridylate synthase I [Pseudomonas sp. GM49]
gi|398177722|gb|EJM65391.1| pseudouridylate synthase I [Pseudomonas sp. GM49]
Length = 284
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 140/316 (44%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKRKP--GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWTMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + L+G HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEVTWNHRPLDVERMAEAAQYLLGTHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L+++ + A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRSGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 253 LYLVQVEYRDEFELPE 268
>gi|338998566|ref|ZP_08637238.1| tRNA pseudouridine synthase A [Halomonas sp. TD01]
gi|338764483|gb|EGP19443.1| tRNA pseudouridine synthase A [Halomonas sp. TD01]
Length = 312
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 132/312 (42%), Gaps = 60/312 (19%)
Query: 53 TNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVH 112
T + R + +EY GTRF G Q+ + +V +E+A K PV I S RTD+GVH
Sbjct: 10 TKPLVGRLAMGIEYDGTRFCGFQRLKHAASVQQAVEDALEKVASAPVRIHASGRTDSGVH 69
Query: 113 AASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
A V H D PP S D+ V V+ V DFH+R
Sbjct: 70 ATRQVIHFD-------------PPVQRSEKAWIFGSNTNLPRDVAVRWVKPVSDDFHSRL 116
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
A R Y Y IL V E+ + LD AM A + LVG HDFSSFRA+GCQ
Sbjct: 117 GALGRRYRY-ILLNQISRPVLERHNVTWCRDPLDADAMHRAAQALVGEHDFSSFRAAGCQ 175
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
+ +P R ++H EV K++
Sbjct: 176 SKTPWR---QMHFVEV--------------------------------------KRYGPI 194
Query: 293 EVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL---- 347
VI + +FL+H +R I G L +VG G +ER+L K APACGL
Sbjct: 195 VVIDIQGNAFLHHMIRNIAGALVSVGRGSQDEGHIERLLALKNRRKGDVTAPACGLHFVD 254
Query: 348 SLGFVKYDLPED 359
SL ++DLP++
Sbjct: 255 SLYDERFDLPKE 266
>gi|24113690|ref|NP_708200.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 301]
gi|30063744|ref|NP_837915.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|110806283|ref|YP_689803.1| tRNA pseudouridine synthase A [Shigella flexneri 5 str. 8401]
gi|187733598|ref|YP_001881140.1| tRNA pseudouridine synthase A [Shigella boydii CDC 3083-94]
gi|191168731|ref|ZP_03030509.1| tRNA pseudouridine synthase A [Escherichia coli B7A]
gi|193062289|ref|ZP_03043384.1| tRNA pseudouridine synthase A [Escherichia coli E22]
gi|194432876|ref|ZP_03065160.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1012]
gi|209919818|ref|YP_002293902.1| tRNA pseudouridine synthase A [Escherichia coli SE11]
gi|218554873|ref|YP_002387786.1| tRNA pseudouridine synthase A [Escherichia coli IAI1]
gi|260844905|ref|YP_003222683.1| pseudouridylate synthase I [Escherichia coli O103:H2 str. 12009]
gi|300818078|ref|ZP_07098290.1| tRNA pseudouridine synthase A [Escherichia coli MS 107-1]
gi|300918510|ref|ZP_07135103.1| tRNA pseudouridine synthase A [Escherichia coli MS 115-1]
gi|300924588|ref|ZP_07140550.1| tRNA pseudouridine synthase A [Escherichia coli MS 182-1]
gi|301328823|ref|ZP_07221865.1| tRNA pseudouridine synthase A [Escherichia coli MS 78-1]
gi|331653762|ref|ZP_08354763.1| tRNA pseudouridine synthase A [Escherichia coli M718]
gi|332278531|ref|ZP_08390944.1| tRNA pseudouridine synthase A [Shigella sp. D9]
gi|384543973|ref|YP_005728036.1| tRNA pseudouridine synthase A [Shigella flexneri 2002017]
gi|415813460|ref|ZP_11505269.1| tRNA pseudouridine synthase A [Escherichia coli LT-68]
gi|415853491|ref|ZP_11529467.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|415876975|ref|ZP_11543298.1| tRNA pseudouridine synthase A [Escherichia coli MS 79-10]
gi|416286442|ref|ZP_11648341.1| tRNA pseudouridine synthase A [Shigella boydii ATCC 9905]
gi|416343877|ref|ZP_11677777.1| tRNA pseudouridine synthase A [Escherichia coli EC4100B]
gi|417133463|ref|ZP_11978248.1| tRNA pseudouridine synthase A [Escherichia coli 5.0588]
gi|417163522|ref|ZP_11998710.1| tRNA pseudouridine synthase A [Escherichia coli 99.0741]
gi|417175914|ref|ZP_12005710.1| tRNA pseudouridine synthase A [Escherichia coli 3.2608]
gi|417182850|ref|ZP_12009407.1| tRNA pseudouridine synthase A [Escherichia coli 93.0624]
gi|417232274|ref|ZP_12033672.1| tRNA pseudouridine synthase A [Escherichia coli 5.0959]
gi|417254175|ref|ZP_12045931.1| tRNA pseudouridine synthase A [Escherichia coli 4.0967]
gi|417624210|ref|ZP_12274509.1| tRNA pseudouridine synthase A [Escherichia coli STEC_H.1.8]
gi|417673121|ref|ZP_12322577.1| tRNA pseudouridine synthase A [Shigella dysenteriae 155-74]
gi|417690447|ref|ZP_12339669.1| tRNA pseudouridine synthase A [Shigella boydii 5216-82]
gi|417703084|ref|ZP_12352195.1| tRNA pseudouridine synthase A [Shigella flexneri K-218]
gi|417708363|ref|ZP_12357396.1| tRNA pseudouridine synthase A [Shigella flexneri VA-6]
gi|417713372|ref|ZP_12362338.1| tRNA pseudouridine synthase A [Shigella flexneri K-272]
gi|417718214|ref|ZP_12367112.1| tRNA pseudouridine synthase A [Shigella flexneri K-227]
gi|417724060|ref|ZP_12372864.1| tRNA pseudouridine synthase A [Shigella flexneri K-304]
gi|417729243|ref|ZP_12377941.1| tRNA pseudouridine synthase A [Shigella flexneri K-671]
gi|417734533|ref|ZP_12383184.1| tRNA pseudouridine synthase A [Shigella flexneri 2747-71]
gi|417739157|ref|ZP_12387737.1| tRNA pseudouridine synthase A [Shigella flexneri 4343-70]
gi|417744197|ref|ZP_12392723.1| tRNA pseudouridine synthase A [Shigella flexneri 2930-71]
gi|418257306|ref|ZP_12880974.1| tRNA pseudouridine synthase A [Shigella flexneri 6603-63]
gi|419176253|ref|ZP_13720069.1| tRNA pseudouridine synthase A [Escherichia coli DEC7B]
gi|419290259|ref|ZP_13832351.1| tRNA pseudouridine synthase A [Escherichia coli DEC11A]
gi|419295587|ref|ZP_13837633.1| tRNA pseudouridine synthase A [Escherichia coli DEC11B]
gi|419301045|ref|ZP_13843044.1| tRNA pseudouridine synthase A [Escherichia coli DEC11C]
gi|419307178|ref|ZP_13849077.1| tRNA pseudouridine synthase A [Escherichia coli DEC11D]
gi|419312182|ref|ZP_13854044.1| tRNA pseudouridine synthase A [Escherichia coli DEC11E]
gi|419392409|ref|ZP_13933221.1| tRNA pseudouridine synthase A [Escherichia coli DEC15A]
gi|419397446|ref|ZP_13938214.1| tRNA pseudouridine synthase A [Escherichia coli DEC15B]
gi|419402787|ref|ZP_13943511.1| tRNA pseudouridine synthase A [Escherichia coli DEC15C]
gi|419407906|ref|ZP_13948595.1| tRNA pseudouridine synthase A [Escherichia coli DEC15D]
gi|419413492|ref|ZP_13954144.1| tRNA pseudouridine synthase A [Escherichia coli DEC15E]
gi|419863554|ref|ZP_14386071.1| tRNA pseudouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|419870679|ref|ZP_14392772.1| tRNA pseudouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|419923015|ref|ZP_14440988.1| tRNA pseudouridine synthase A [Escherichia coli 541-15]
gi|419931013|ref|ZP_14448604.1| tRNA pseudouridine synthase A [Escherichia coli 541-1]
gi|419950616|ref|ZP_14466828.1| tRNA pseudouridine synthase A [Escherichia coli CUMT8]
gi|420321220|ref|ZP_14823049.1| tRNA pseudouridine synthase A [Shigella flexneri 2850-71]
gi|420332227|ref|ZP_14833882.1| tRNA pseudouridine synthase A [Shigella flexneri K-1770]
gi|420337014|ref|ZP_14838583.1| tRNA pseudouridine synthase A [Shigella flexneri K-315]
gi|420342641|ref|ZP_14844114.1| tRNA pseudouridine synthase A [Shigella flexneri K-404]
gi|420348217|ref|ZP_14849606.1| tRNA pseudouridine synthase A [Shigella boydii 965-58]
gi|421683397|ref|ZP_16123192.1| tRNA pseudouridine synthase A [Shigella flexneri 1485-80]
gi|422351082|ref|ZP_16431928.1| tRNA pseudouridine synthase A [Escherichia coli MS 117-3]
gi|422762178|ref|ZP_16815935.1| tRNA pseudouridine synthase A [Escherichia coli E1167]
gi|422956322|ref|ZP_16968796.1| tRNA pseudouridine synthase A [Escherichia coli H494]
gi|424838682|ref|ZP_18263319.1| tRNA pseudouridine synthase A [Shigella flexneri 5a str. M90T]
gi|425306045|ref|ZP_18695754.1| tRNA pseudouridine synthase A [Escherichia coli N1]
gi|432534589|ref|ZP_19771564.1| tRNA pseudouridine synthase A [Escherichia coli KTE234]
gi|432675423|ref|ZP_19910882.1| tRNA pseudouridine synthase A [Escherichia coli KTE142]
gi|432806465|ref|ZP_20040393.1| tRNA pseudouridine synthase A [Escherichia coli KTE91]
gi|432809965|ref|ZP_20043858.1| tRNA pseudouridine synthase A [Escherichia coli KTE101]
gi|432935099|ref|ZP_20134536.1| tRNA pseudouridine synthase A [Escherichia coli KTE184]
gi|432968415|ref|ZP_20157330.1| tRNA pseudouridine synthase A [Escherichia coli KTE203]
gi|433194386|ref|ZP_20378376.1| tRNA pseudouridine synthase A [Escherichia coli KTE90]
gi|450218656|ref|ZP_21896030.1| tRNA pseudouridine synthase A [Escherichia coli O08]
gi|42559800|sp|Q83QR3.1|TRUA_SHIFL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|122957319|sp|Q0T2G7.1|TRUA_SHIF8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226708652|sp|B7M6J9.1|TRUA_ECO8A RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238057730|sp|B6I4U6.1|TRUA_ECOSE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238691701|sp|B2TWA0.1|TRUA_SHIB3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|24052758|gb|AAN43907.1| pseudouridylate synthase I [Shigella flexneri 2a str. 301]
gi|30041999|gb|AAP17725.1| pseudouridylate synthase I [Shigella flexneri 2a str. 2457T]
gi|110615831|gb|ABF04498.1| pseudouridylate synthase I [Shigella flexneri 5 str. 8401]
gi|187430590|gb|ACD09864.1| tRNA pseudouridine synthase A [Shigella boydii CDC 3083-94]
gi|190901221|gb|EDV60992.1| tRNA pseudouridine synthase A [Escherichia coli B7A]
gi|192931955|gb|EDV84554.1| tRNA pseudouridine synthase A [Escherichia coli E22]
gi|194418864|gb|EDX34949.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1012]
gi|209913077|dbj|BAG78151.1| tRNA pseudouridine synthase A [Escherichia coli SE11]
gi|218361641|emb|CAQ99237.1| pseudouridylate synthase I [Escherichia coli IAI1]
gi|257760052|dbj|BAI31549.1| pseudouridylate synthase I [Escherichia coli O103:H2 str. 12009]
gi|281601759|gb|ADA74743.1| tRNA pseudouridine synthase A [Shigella flexneri 2002017]
gi|300414324|gb|EFJ97634.1| tRNA pseudouridine synthase A [Escherichia coli MS 115-1]
gi|300419219|gb|EFK02530.1| tRNA pseudouridine synthase A [Escherichia coli MS 182-1]
gi|300529222|gb|EFK50284.1| tRNA pseudouridine synthase A [Escherichia coli MS 107-1]
gi|300844772|gb|EFK72532.1| tRNA pseudouridine synthase A [Escherichia coli MS 78-1]
gi|313651142|gb|EFS15541.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|320178707|gb|EFW53670.1| tRNA pseudouridine synthase A [Shigella boydii ATCC 9905]
gi|320199909|gb|EFW74498.1| tRNA pseudouridine synthase A [Escherichia coli EC4100B]
gi|323172001|gb|EFZ57645.1| tRNA pseudouridine synthase A [Escherichia coli LT-68]
gi|324020840|gb|EGB90059.1| tRNA pseudouridine synthase A [Escherichia coli MS 117-3]
gi|324117804|gb|EGC11703.1| tRNA pseudouridine synthase A [Escherichia coli E1167]
gi|331048611|gb|EGI20687.1| tRNA pseudouridine synthase A [Escherichia coli M718]
gi|332088449|gb|EGI93567.1| tRNA pseudouridine synthase A [Shigella boydii 5216-82]
gi|332090156|gb|EGI95255.1| tRNA pseudouridine synthase A [Shigella dysenteriae 155-74]
gi|332100883|gb|EGJ04229.1| tRNA pseudouridine synthase A [Shigella sp. D9]
gi|332754968|gb|EGJ85333.1| tRNA pseudouridine synthase A [Shigella flexneri 4343-70]
gi|332755368|gb|EGJ85732.1| tRNA pseudouridine synthase A [Shigella flexneri K-671]
gi|332756607|gb|EGJ86958.1| tRNA pseudouridine synthase A [Shigella flexneri 2747-71]
gi|332766138|gb|EGJ96348.1| tRNA pseudouridine synthase A [Shigella flexneri 2930-71]
gi|333001463|gb|EGK21031.1| tRNA pseudouridine synthase A [Shigella flexneri VA-6]
gi|333001944|gb|EGK21510.1| tRNA pseudouridine synthase A [Shigella flexneri K-218]
gi|333002687|gb|EGK22247.1| tRNA pseudouridine synthase A [Shigella flexneri K-272]
gi|333016355|gb|EGK35686.1| tRNA pseudouridine synthase A [Shigella flexneri K-304]
gi|333016571|gb|EGK35901.1| tRNA pseudouridine synthase A [Shigella flexneri K-227]
gi|342928329|gb|EGU97051.1| tRNA pseudouridine synthase A [Escherichia coli MS 79-10]
gi|345377171|gb|EGX09103.1| tRNA pseudouridine synthase A [Escherichia coli STEC_H.1.8]
gi|371599857|gb|EHN88635.1| tRNA pseudouridine synthase A [Escherichia coli H494]
gi|378032225|gb|EHV94807.1| tRNA pseudouridine synthase A [Escherichia coli DEC7B]
gi|378130060|gb|EHW91430.1| tRNA pseudouridine synthase A [Escherichia coli DEC11A]
gi|378142674|gb|EHX03876.1| tRNA pseudouridine synthase A [Escherichia coli DEC11B]
gi|378148161|gb|EHX09301.1| tRNA pseudouridine synthase A [Escherichia coli DEC11D]
gi|378150661|gb|EHX11776.1| tRNA pseudouridine synthase A [Escherichia coli DEC11C]
gi|378157810|gb|EHX18841.1| tRNA pseudouridine synthase A [Escherichia coli DEC11E]
gi|378237609|gb|EHX97632.1| tRNA pseudouridine synthase A [Escherichia coli DEC15A]
gi|378243567|gb|EHY03513.1| tRNA pseudouridine synthase A [Escherichia coli DEC15B]
gi|378247321|gb|EHY07240.1| tRNA pseudouridine synthase A [Escherichia coli DEC15C]
gi|378254285|gb|EHY14149.1| tRNA pseudouridine synthase A [Escherichia coli DEC15D]
gi|378258924|gb|EHY18740.1| tRNA pseudouridine synthase A [Escherichia coli DEC15E]
gi|383467734|gb|EID62755.1| tRNA pseudouridine synthase A [Shigella flexneri 5a str. M90T]
gi|386151317|gb|EIH02606.1| tRNA pseudouridine synthase A [Escherichia coli 5.0588]
gi|386172747|gb|EIH44761.1| tRNA pseudouridine synthase A [Escherichia coli 99.0741]
gi|386178606|gb|EIH56085.1| tRNA pseudouridine synthase A [Escherichia coli 3.2608]
gi|386184703|gb|EIH67442.1| tRNA pseudouridine synthase A [Escherichia coli 93.0624]
gi|386205273|gb|EII09784.1| tRNA pseudouridine synthase A [Escherichia coli 5.0959]
gi|386216102|gb|EII32594.1| tRNA pseudouridine synthase A [Escherichia coli 4.0967]
gi|388339480|gb|EIL05865.1| tRNA pseudouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|388342056|gb|EIL08117.1| tRNA pseudouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|388394778|gb|EIL56034.1| tRNA pseudouridine synthase A [Escherichia coli 541-15]
gi|388399266|gb|EIL60068.1| tRNA pseudouridine synthase A [Escherichia coli 541-1]
gi|388416717|gb|EIL76598.1| tRNA pseudouridine synthase A [Escherichia coli CUMT8]
gi|391247741|gb|EIQ06987.1| tRNA pseudouridine synthase A [Shigella flexneri 2850-71]
gi|391250268|gb|EIQ09490.1| tRNA pseudouridine synthase A [Shigella flexneri K-1770]
gi|391260753|gb|EIQ19807.1| tRNA pseudouridine synthase A [Shigella flexneri K-315]
gi|391265714|gb|EIQ24681.1| tRNA pseudouridine synthase A [Shigella flexneri K-404]
gi|391269220|gb|EIQ28132.1| tRNA pseudouridine synthase A [Shigella boydii 965-58]
gi|397896928|gb|EJL13339.1| tRNA pseudouridine synthase A [Shigella flexneri 6603-63]
gi|404338896|gb|EJZ65340.1| tRNA pseudouridine synthase A [Shigella flexneri 1485-80]
gi|408228212|gb|EKI51754.1| tRNA pseudouridine synthase A [Escherichia coli N1]
gi|431060225|gb|ELD69559.1| tRNA pseudouridine synthase A [Escherichia coli KTE234]
gi|431213958|gb|ELF11813.1| tRNA pseudouridine synthase A [Escherichia coli KTE142]
gi|431354607|gb|ELG41333.1| tRNA pseudouridine synthase A [Escherichia coli KTE91]
gi|431362733|gb|ELG49311.1| tRNA pseudouridine synthase A [Escherichia coli KTE101]
gi|431453267|gb|ELH33677.1| tRNA pseudouridine synthase A [Escherichia coli KTE184]
gi|431471532|gb|ELH51425.1| tRNA pseudouridine synthase A [Escherichia coli KTE203]
gi|431715836|gb|ELJ79981.1| tRNA pseudouridine synthase A [Escherichia coli KTE90]
gi|449317716|gb|EMD07801.1| tRNA pseudouridine synthase A [Escherichia coli O08]
Length = 270
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 144/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|113461401|ref|YP_719470.1| tRNA pseudouridine synthase A [Haemophilus somnus 129PT]
gi|122945393|sp|Q0I4X5.1|TRUA_HAES1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|112823444|gb|ABI25533.1| pseudouridylate synthetase [Haemophilus somnus 129PT]
Length = 269
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 135/302 (44%), Gaps = 58/302 (19%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT + G Q+Q N +V LE A + I + RTD+GVHA V H D
Sbjct: 5 LGIEYNGTHYFGWQRQANVTSVQEKLESAVSFVANEFCQIYCAGRTDSGVHATGQVVHFD 64
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ I K +N L + DI V + V DFHARF A R Y Y
Sbjct: 65 TKAIRSEKAWTF-----------GLNANLPA--DIAVRWAKVVSEDFHARFSATARRYRY 111
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P ++F H LD R M +A + L+G HDFSSFRA+ CQ+N+P R +
Sbjct: 112 LIYNHPLRSALFPTGVT-HHHVALDHRLMHQAGQYLLGEHDFSSFRAAQCQSNTPWRNIH 170
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
LHV Q + ++ I +A +F
Sbjct: 171 HLHV-----------FRQANYIIVDI-----------------------------QANAF 190
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY----DLP 357
++H VR IVG L +G+G+ V ++ +L K T A+P A GL L VKY +LP
Sbjct: 191 VHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTAKPDGLYLVEVKYPNHFNLP 250
Query: 358 ED 359
++
Sbjct: 251 KN 252
>gi|410459899|ref|ZP_11313588.1| tRNA pseudouridine synthase A [Bacillus azotoformans LMG 9581]
gi|409928010|gb|EKN65134.1| tRNA pseudouridine synthase A [Bacillus azotoformans LMG 9581]
Length = 245
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 140/299 (46%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAAS 115
+ R + Y GT FSG Q Q N RTV G +E+A K G+ + I S RTDAGVHA
Sbjct: 1 MNRLKCTIAYDGTNFSGFQVQSNGRTVQGDIEKALFKLHKGEEIRIHPSGRTDAGVHAHG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D P + P D + A+N L DI+ + V +DFHAR+
Sbjct: 61 QVIHFD-------SPLSI--PVDR--YQMALNTLLPD--DIVALTIENVNTDFHARYNVV 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
++ Y Y +L+ E VF K+ +++ ++L + EA K L+G HDF+SF ++ +
Sbjct: 108 KKEYRYFLLNQKER-DVFRKNHSYYYPYAINLDRIIEATKYLLGAHDFTSFCSTKSDKEN 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT++E+ + + + +F + NG
Sbjct: 167 KVRTIEEIEIWKENNEIVFRFVG------------------NG----------------- 191
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR+IVG L VG G+L D++ IL+ K AA APA GL L V Y
Sbjct: 192 -----FLYNMVRIIVGTLLKVGQGKLEPEDIKVILEEKNRKAAGKTAPAHGLHLWKVWY 245
>gi|374572313|ref|ZP_09645409.1| pseudouridylate synthase I [Bradyrhizobium sp. WSM471]
gi|374420634|gb|EHR00167.1| pseudouridylate synthase I [Bradyrhizobium sp. WSM471]
Length = 252
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 132/299 (44%), Gaps = 53/299 (17%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
++ RY + +EY G F G Q Q +V G LE A G + + RTDAGVHA
Sbjct: 7 KMPRYKLIIEYDGAPFFGWQVQETLPSVQGALEAAVKAMTGADARVHGAGRTDAGVHARG 66
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V HVD+ + PP R +N L+ I V + VP F ARF A
Sbjct: 67 QVAHVDIAK--------QFPP---GRFRDGLNAHLRPH-PIAVLEADIVPETFEARFSAV 114
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y YRI++ L++ + AW V LD AM A + L+G HDF++FR + CQA S
Sbjct: 115 KRHYRYRIVNTRANLAL-DAGHAWRVPRRLDADAMHAAAQRLLGKHDFTTFRDTECQARS 173
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P +TLD+L V + R ++
Sbjct: 174 PEKTLDQLDVL----------------------------------------RDGREITIL 193
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G T D+ L A+ A +AP GL L V Y
Sbjct: 194 TSARSFLHSQVRSMVGSLMWVGEGRWTADDLSAALAARNRAACGIVAPPDGLYLMQVDY 252
>gi|268683056|ref|ZP_06149918.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332]
gi|268623340|gb|EEZ55740.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332]
Length = 265
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 140/307 (45%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ TV LE A + G+ V+ +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHAA+ V H D P + V R VN L EG I V R V FH
Sbjct: 60 GVHAAAQVVHFDTTAAR---------PQQAWV--RGVNAHL-PEG-IAVLHARQVAPGFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M+ A +L+G DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESAPVRSPLL---KNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+GCQA SP++T+ +++ S L +D
Sbjct: 164 AAGCQAKSPVKTIYRAGLTQ-------------SAGLIRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|227512894|ref|ZP_03942943.1| pseudouridylate synthase [Lactobacillus buchneri ATCC 11577]
gi|227523022|ref|ZP_03953071.1| pseudouridylate synthase [Lactobacillus hilgardii ATCC 8290]
gi|227083894|gb|EEI19206.1| pseudouridylate synthase [Lactobacillus buchneri ATCC 11577]
gi|227089840|gb|EEI25152.1| pseudouridylate synthase [Lactobacillus hilgardii ATCC 8290]
Length = 255
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 133/300 (44%), Gaps = 61/300 (20%)
Query: 66 YIGTRFSGSQKQLNCRTVVGVLEEAFH---KFIGQPVSISLSSRTDAGVHAASNVCHVDV 122
Y GT FSG ++Q N RT+ GVL + + K P+ I S RTDAGVHA + V H D
Sbjct: 2 YDGTNFSGFERQPNRRTIEGVLTQKVNVMAKLPEPPIIIYGSGRTDAGVHAVAQVAHFDF 61
Query: 123 ERISKRKPGEVLPPHDSSV--VRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
P D S + R +N L D+ +T V V +DFHAR+ + YF
Sbjct: 62 -------------PFDLSAEAIYRGLNSMLPL--DMEITKVEKVSNDFHARYDVSGKKYF 106
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
YR+ G E + F+++ H +D+ + A LVG HDFSSF ASG A S IRT
Sbjct: 107 YRMYLG-EFQNPFKRNYTGHWKFPIDMEKVNHALADLVGEHDFSSFVASGSTARSNIRT- 164
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
I S L +N L G
Sbjct: 165 ----------------IYSASAKLDQAENEVHLEFYGNG--------------------- 187
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY--DLPE 358
FLY+ VR++VGV+ +G+G SDV R+ + K A PA GL L V Y D PE
Sbjct: 188 FLYNMVRIMVGVVAEIGSGMRPESDVLRLFEVKDRDQARRTMPASGLYLKRVFYEGDDPE 247
>gi|410616336|ref|ZP_11327328.1| tRNA pseudouridine38-40 synthase [Glaciecola polaris LMG 21857]
gi|410164045|dbj|GAC31466.1| tRNA pseudouridine38-40 synthase [Glaciecola polaris LMG 21857]
Length = 263
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 136/315 (43%), Gaps = 61/315 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + VEY G RF G Q+Q +V LEEA + +P+ + + RTDAGVHA V
Sbjct: 2 RIALGVEYDGARFHGWQRQNEVISVQQHLEEALTRIANEPIRVICAGRTDAGVHATGQVI 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H + S ++P VN +L + V V+ VP DFHARF A R
Sbjct: 62 HFET---SSQRPDRAWT--------LGVNTYLPDT--VSVRWVKSVPDDFHARFSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I+ S + H+ +LD M +A + LVG HDFSSFRA CQA + R
Sbjct: 109 YRY-IIYNSTLRSAILANGVTHIYGDLDHELMHQAAQKLVGKHDFSSFRAVNCQAKTATR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-AR 297
T+ + V K+ Y VI +
Sbjct: 168 TMSHIRV-----------------------------------------KRMGDYIVIDVK 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +FL+H VR I G L A+G E + V+ +L+ K T A A GL L V Y P
Sbjct: 187 ANAFLHHMVRNITGTLVAIGHKEKPIEWVDELLEVKDRTQAGITALPNGLYLVHVTY--P 244
Query: 358 EDDQTDAAESLETCP 372
E T A SL+ P
Sbjct: 245 E---TFALPSLKMGP 256
>gi|348590140|ref|YP_004874602.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis MCE3]
gi|347974044|gb|AEP36579.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis MCE3]
Length = 268
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 128/305 (41%), Gaps = 58/305 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + + Y G + G Q Q N T+ LE A KF V+ + RTD GVHA V
Sbjct: 4 RVALGISYDGRDYQGWQTQPNGLTIQDFLEAALFKFTNHKVNTICAGRTDTGVHAIGQVV 63
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D E +S+ V R VN L I V + VP +F ARF A RT
Sbjct: 64 HFDTE-VSRELESWV----------RGVNAHLPDS--IRVRWAQEVPDEFSARFSATHRT 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +L LS RA LD+ M A + +G HDFSSFR+S CQA+SPIR
Sbjct: 111 YVY-LLRNERVLSPIWSGRAGWDFHNLDIEGMNIATQSFIGTHDFSSFRSSQCQASSPIR 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
+LD L + P L +F + RA
Sbjct: 170 SLDTL------------KLEAKGPFL-----------------IFTL-----------RA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV----KY 354
FL+H VR I+G L VG G + ++ AK ++P GL V KY
Sbjct: 190 NGFLHHMVRNIIGALLYVGMGRFKAEYISELIDAKDRKFSAPTFMPDGLYFACVDYPDKY 249
Query: 355 DLPED 359
D+P++
Sbjct: 250 DIPQN 254
>gi|340787061|ref|YP_004752526.1| tRNA pseudouridine synthase A [Collimonas fungivorans Ter331]
gi|340552328|gb|AEK61703.1| tRNA pseudouridine synthase A [Collimonas fungivorans Ter331]
Length = 280
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 130/307 (42%), Gaps = 58/307 (18%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
N + R ++ V+Y GT + G Q Q + +TV LE A KF + + + RTD+GVHA
Sbjct: 11 NPNLNRIVLGVQYDGTPWQGWQTQPSGKTVQDRLEAALQKFAQGAIDTTCAGRTDSGVHA 70
Query: 114 ASNVCHVDV----ERISK-RKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
V H D E S R LPP S VR A L +EG+ F
Sbjct: 71 LEQVVHFDTALSRETFSWVRGLNAFLPP--SIAVRWAHQLPLLAEGE----------DQF 118
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A RTY Y + + P + E W V L+L M++A LVG HDFS+FRA
Sbjct: 119 HARFSATARTYHYLLYNNPVRSPLLEGKAGW-VFRPLELELMRQAAAHLVGTHDFSAFRA 177
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQA SP+RT++E+ + +FS
Sbjct: 178 VECQAKSPVRTMEEIRIERRGDLIVFS--------------------------------- 204
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
RA +FL+H VR IVG L G + +L + A+P GL
Sbjct: 205 -------LRANAFLHHMVRNIVGSLIYAGNASKPPEWLAELLAQRDRGRAAPTFMPDGLY 257
Query: 349 LGFVKYD 355
L V YD
Sbjct: 258 LAQVAYD 264
>gi|398900393|ref|ZP_10649450.1| pseudouridylate synthase I [Pseudomonas sp. GM50]
gi|398181292|gb|EJM68862.1| pseudouridylate synthase I [Pseudomonas sp. GM50]
Length = 284
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 138/309 (44%), Gaps = 67/309 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLLCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + + W+ LD+ M EA + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNDEITWN-HRPLDVERMAEAAQYLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ L L V+ +G V I
Sbjct: 180 KSPIKELHHLRVTR-----------------------------HGKMIVLDI-------- 202
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL +G GE V ++ +L+++ + A GL L V+
Sbjct: 203 ---RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRSGGVTAHPFGLYLVQVE 259
Query: 354 Y----DLPE 358
Y +LPE
Sbjct: 260 YRDEFELPE 268
>gi|167032538|ref|YP_001667769.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1]
gi|166859026|gb|ABY97433.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1]
Length = 286
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 138/314 (43%), Gaps = 67/314 (21%)
Query: 52 STNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAG 110
S + R + VEY G R+ G Q+Q + +V LE+A K +P+S+ + RTDAG
Sbjct: 13 SAAEGFSRIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICAGRTDAG 72
Query: 111 VHAASNVCHVDVERISKRKPGEVLP----PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPS 166
VH + H D + + + PHD SVV + +P+
Sbjct: 73 VHGCGQIVHFDTRAVRDERAWTMGTNFNLPHDISVVWS-----------------QPMPA 115
Query: 167 DFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSF 226
DFHARF+A R Y Y I + P + ++ W+ LD+ M EA + L+G HDFS+F
Sbjct: 116 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWN-HRPLDVERMAEAAQFLLGTHDFSAF 174
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RAS CQA SPI+ + L V+
Sbjct: 175 RASQCQAKSPIKHIYHLRVT---------------------------------------- 194
Query: 287 KKHRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPAC 345
+H V+ RA +FL+H VR I GVL A+G GE V+ +L+ + A
Sbjct: 195 -RHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVTWAREVLEGRNRREGGVTAHPY 253
Query: 346 GLSLGFVKYDLPED 359
GL L V+ + PE+
Sbjct: 254 GLYL--VQVEYPEE 265
>gi|409349546|ref|ZP_11232981.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
gi|407878109|emb|CCK85039.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
Length = 261
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 135/300 (45%), Gaps = 52/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + + Y G F G Q Q RT+ +EE + GQ V + S RTDAGVHA
Sbjct: 1 MTRYKLTLSYDGHDFHGFQSQPGQRTIQRTVEEILKRMTKGQDVRVYGSGRTDAGVHAVG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D PG +PP + + RA+N Q D++ TD V DFH+RF +
Sbjct: 61 QVIHFDY-------PGREIPPQN---MIRALNS--QLPMDMVFTDCAIVDKDFHSRFSVK 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ S ++ F++ H +D+ MQ A K L+G HDF+SF ASG Q
Sbjct: 109 GKWYRYRV-SLDHFVNPFKRFYTGHYPYPVDVEKMQIAAKDLLGRHDFTSFAASGGQIED 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R D +V+ V Q+ V+ I
Sbjct: 168 KVR--DMYYVNVAVDK------EQNEIVMDFI---------------------------- 191
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A FLY+ VR++V L +G G V D++R++KAK A A GL L V YD
Sbjct: 192 --ATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIKAKNRLEVQQTAQASGLYLYHVFYD 249
>gi|392408581|ref|YP_006445188.1| pseudouridylate synthase I [Desulfomonile tiedjei DSM 6799]
gi|390621717|gb|AFM22924.1| pseudouridylate synthase I [Desulfomonile tiedjei DSM 6799]
Length = 246
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 135/298 (45%), Gaps = 52/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ ++ I VEY GT + G Q Q + TV G LE A + + PV + + RTDAGVHA
Sbjct: 1 MAKFRITVEYDGTAYHGWQLQKSLPTVQGALEGALSRILTVPVRVHGAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H + K E L ++A N L D++V ++ P DFHAR AQ
Sbjct: 61 VAHFSADW---NKSLEAL--------QKACNALLPP--DVVVRNLVSAPEDFHARHSAQS 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+TY Y IL+GP ++ + WH+ LD+ AM+ A K+L G HDF++F + S
Sbjct: 108 KTYVYTILNGPLRCAL-NRHYTWHIPFSLDVDAMKHAAKLLEGTHDFAAFGSPTEGTPST 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+R + H S NG S+ + +
Sbjct: 167 VRRILSAHWS------------------------------NGNSS--------DTLQFTI 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL + VR +VG L VG G++ + +IL++ + + P AP GL L V+Y
Sbjct: 189 IGTGFLRYMVRSLVGTLVPVGAGKIDPTAFGKILESCDRSQSGPTAPPHGLCLALVEY 246
>gi|312862611|ref|ZP_07722852.1| tRNA pseudouridine synthase A [Streptococcus vestibularis F0396]
gi|311101871|gb|EFQ60073.1| tRNA pseudouridine synthase A [Streptococcus vestibularis F0396]
Length = 249
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 132/298 (44%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q N R++ LE+ + G PV++ + RTDAGVHA V
Sbjct: 3 RYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + +R P ++ D+ Q DI + + V +FHAR+ +
Sbjct: 63 IHFDLPQ--ERDPEKLRFGLDT-----------QCPDDIDIVSIELVSEEFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYATHYPYPLSLAPMQEAAMELVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQASVS--------------------------------------IDEKTGFYIFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS V+ +L++ A P A GL L ++Y+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESCDRNLAGPTAAGNGLYLKEIRYE 248
>gi|227509961|ref|ZP_03940010.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190567|gb|EEI70634.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 255
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 133/300 (44%), Gaps = 61/300 (20%)
Query: 66 YIGTRFSGSQKQLNCRTVVGVLEEAFH---KFIGQPVSISLSSRTDAGVHAASNVCHVDV 122
Y GT FSG ++Q N RT+ GVL + + K P+ I S RTDAGVHA + V H D
Sbjct: 2 YDGTNFSGFERQPNRRTIEGVLTQKVNVMAKMPEPPIIIYGSGRTDAGVHAVAQVAHFDF 61
Query: 123 ERISKRKPGEVLPPHDSSV--VRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
P D S + R +N L D+ +T V V +DFHAR+ + YF
Sbjct: 62 -------------PFDLSTEAIYRGLNSMLPL--DMEITKVEKVSNDFHARYDVSGKKYF 106
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
YR+ G E + F+++ H +D+ + A LVG HDFSSF ASG A S IRT
Sbjct: 107 YRMYLG-EFQNPFKRNYTGHWKFPIDMEKVNHALADLVGEHDFSSFVASGSTARSNIRT- 164
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
I S L +N L G
Sbjct: 165 ----------------IYSASAKLDQAENEVHLEFYGNG--------------------- 187
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY--DLPE 358
FLY+ VR++VGV+ +G+G SDV R+ + K A PA GL L V Y D PE
Sbjct: 188 FLYNMVRIMVGVVAEIGSGMRPESDVLRLFEVKDRDQARRTMPASGLYLKRVFYEGDDPE 247
>gi|431801485|ref|YP_007228388.1| tRNA pseudouridine synthase A [Pseudomonas putida HB3267]
gi|430792250|gb|AGA72445.1| tRNA pseudouridine synthase A [Pseudomonas putida HB3267]
Length = 284
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 135/306 (44%), Gaps = 65/306 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G R+ G Q+Q + +V LE+A K +P+S+ + RTDAGVH +
Sbjct: 18 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICAGRTDAGVHGCGQI 77
Query: 118 CHVDVERISKRKPGEVLP----PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + + + PHD SVV R +P+DFHARF+
Sbjct: 78 VHFDTRAVRDERAWTMGTNFNLPHDISVVWS-----------------RPMPADFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M EA + L+G HDFS+FRAS CQA
Sbjct: 121 ACARRYRYVIYNDPIRPAHLAEEVTWN-HRPLDVERMAEAAQYLLGTHDFSAFRASQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ + L V+ +G V +
Sbjct: 180 KSPIKHIYHLRVTR-----------------------------HGQMIVLDV-------- 202
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL +G GE V+ +L+ + A GL L V+
Sbjct: 203 ---RATAFLHHMVRNIAGVLMTIGAGERPVTWAREVLEGRNRREGGVTAHPYGLYL--VQ 257
Query: 354 YDLPED 359
+ PE+
Sbjct: 258 VEYPEE 263
>gi|167840379|ref|ZP_02467063.1| tRNA pseudouridine synthase A [Burkholderia thailandensis MSMB43]
Length = 270
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 129/296 (43%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + ++Y G F G Q Q + +TV LE A +F + +++ RTD GVH V
Sbjct: 2 RIALGIQYDGAAFCGWQSQPHGKTVQDSLEAALAEFAQTSLHTTVAGRTDTGVHGLGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + L D S VR N FL S I V + +P FHARF A ERT
Sbjct: 62 HFDTD----------LDRADFSWVR-GTNAFLPST--IAVQWAKPMPDTFHARFAAYERT 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y+Y + P + W V LD+ AM+EA LVG HDFS+FR+S CQA SP++
Sbjct: 109 YYYALYVHPVRSPMLAGRTGW-VHTPLDIDAMREAAGHLVGEHDFSAFRSSECQAKSPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
L ++ GIR RA
Sbjct: 168 HLYQI----------------------------------------GIRPDGDFIHFRFRA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR ++G L AVG G S + +L+++ A+P GL L V Y
Sbjct: 188 SAFLHHMVRNLMGCLVAVGRGRYPASWLADVLESRDRDCAAPTFMPEGLYLAHVGY 243
>gi|192361259|ref|YP_001982227.1| tRNA pseudouridine synthase A [Cellvibrio japonicus Ueda107]
gi|190687424|gb|ACE85102.1| tRNA pseudouridine synthase A [Cellvibrio japonicus Ueda107]
Length = 299
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 147/332 (44%), Gaps = 70/332 (21%)
Query: 37 YPEEVPETRTVTEVMSTN---KRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFH 92
YP + EV+ N + ++R + VEY G F G Q Q N +TV LE+A
Sbjct: 5 YPPRIKPYERNGEVLDMNLWPEGMRRVALGVEYKGADFHGFQVQPNGVKTVQQSLEKALS 64
Query: 93 KFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQS 152
+P+++ + RTDAGVHA + V H D ++ +R + +++
Sbjct: 65 IVADEPITLVCAGRTDAGVHATNQVIHFD------------------TLAQRPLKAWMRG 106
Query: 153 EG-----DIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDL 207
G I + + V FHARF AQ RTY Y + G ++ +W + LD+
Sbjct: 107 LGPHLPDTIGIRWAQDVSPGFHARFSAQSRTYRYLMSDGASSPALLHDQVSWS-SRPLDV 165
Query: 208 RAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSI 267
M++ L+G HDF+SFRA+ CQA SP+R ++ LH+ + + ++ I
Sbjct: 166 ALMRQGAACLIGEHDFTSFRATQCQAKSPVRRIEYLHL-----------VRRGELIVMEI 214
Query: 268 DNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVE 327
RA +FL+H VR IVGVL VG G S V
Sbjct: 215 -----------------------------RANAFLHHMVRNIVGVLMQVGAGFKKPSWVG 245
Query: 328 RILKAKTVTAASPMAPACGLSLGFVKYDLPED 359
+L A+ TAA A GL L V D P++
Sbjct: 246 DVLAARDRTAAGATAKPNGLYL--VAVDYPQE 275
>gi|289623904|ref|ZP_06456858.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289649364|ref|ZP_06480707.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi
str. 2250]
gi|416015348|ref|ZP_11562961.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. B076]
gi|416028247|ref|ZP_11571303.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422404596|ref|ZP_16481648.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422584437|ref|ZP_16659545.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|422595303|ref|ZP_16669591.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|422607822|ref|ZP_16679816.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. mori str.
301020]
gi|298159243|gb|EFI00301.1| tRNA pseudouridine synthase A [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325326|gb|EFW81393.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327689|gb|EFW83697.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330869252|gb|EGH03961.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330877919|gb|EGH12068.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330891458|gb|EGH24119.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. mori str.
301020]
gi|330985608|gb|EGH83711.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 284
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 134/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVDV--ERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T R +P+ FHARF+
Sbjct: 78 VHFDTQAERTMKAWVMGANINLPHDVSV-----------------TWARVMPATFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M A + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMALAAEYLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 180 KSPVKQLHHLRVT-----------------------------------------RHGKMI 198
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE V +L+++ A GL L V
Sbjct: 199 VIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAHPYGLYLVQV 258
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 259 EYRDEFPLPE 268
>gi|365971485|ref|YP_004953046.1| tRNA pseudouridine synthase A [Enterobacter cloacae EcWSU1]
gi|365750398|gb|AEW74625.1| tRNA pseudouridine synthase A [Enterobacter cloacae EcWSU1]
Length = 270
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 140/310 (45%), Gaps = 60/310 (19%)
Query: 54 NKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHA 113
+K + + + +EY G+++ G Q+Q R+V LE+A + +P+S+ + RTDAGVH
Sbjct: 6 HKPVHKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPISVFCAGRTDAGVHG 65
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H + + K + VN L GDI V V+ VP DFHARF
Sbjct: 66 TGQVVHFETTAVRKDAAWTL-----------GVNANL--PGDIAVRWVKDVPDDFHARFS 112
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + +V + H E LD M A + L+G +DF+SFRA CQ+
Sbjct: 113 ATARRYRYVIYNQRLRPAVLSQGVT-HFYELLDAERMHRAAQCLIGENDFTSFRAVQCQS 171
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+P R + ++VS ++ +Y
Sbjct: 172 RTPWRNVMHINVS-----------------------------------------RYGAYV 190
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V+ +A +F++H VR IVG L VG G S + +L AK T A+ A A GL L V
Sbjct: 191 VVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVSV 250
Query: 353 KY----DLPE 358
Y DLP+
Sbjct: 251 DYPDRFDLPK 260
>gi|193068139|ref|ZP_03049103.1| tRNA pseudouridine synthase A [Escherichia coli E110019]
gi|192958418|gb|EDV88857.1| tRNA pseudouridine synthase A [Escherichia coli E110019]
Length = 270
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 144/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPDSWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|404380050|ref|ZP_10985096.1| tRNA pseudouridine synthase A [Simonsiella muelleri ATCC 29453]
gi|294482411|gb|EFG30104.1| tRNA pseudouridine synthase A [Simonsiella muelleri ATCC 29453]
Length = 261
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 138/303 (45%), Gaps = 61/303 (20%)
Query: 59 RYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY++ + Y G+ F G QKQ + TV LE A QP+ ++ + RTD GVHA + V
Sbjct: 4 RYVLTLAYNGSAFYGWQKQTADVPTVQSALEHALSVIAQQPIKVTAAGRTDTGVHATAQV 63
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + +P S R VN L + D+ V + V S+FHARF A R
Sbjct: 64 VHFDSD---ANRP--------ISAWVRGVNAHLPN--DVAVLHAQAVASEFHARFDAFAR 110
Query: 178 TYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
Y Y + P PL V RA LD+ +Q AC+ L+G HDFSSFRA+ CQA S
Sbjct: 111 RYRYVLQFAPVRSPLLV---GRAGWTHYNLDINNIQAACQFLLGEHDFSSFRAAECQAKS 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PI+T+ + + ++ + KL
Sbjct: 168 PIKTMYSIDI-------------------QAMGDLIKLDF-------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A +FL+H +R IVG L VG+G L+V++ +++ ++ A P GL F D
Sbjct: 189 -HANAFLHHMIRNIVGALVYVGSGRLSVNEFAELIEKRSRLDAPPTFMPDGLY--FAGAD 245
Query: 356 LPE 358
PE
Sbjct: 246 YPE 248
>gi|398876314|ref|ZP_10631471.1| pseudouridylate synthase I [Pseudomonas sp. GM67]
gi|398883666|ref|ZP_10638615.1| pseudouridylate synthase I [Pseudomonas sp. GM60]
gi|398196050|gb|EJM83067.1| pseudouridylate synthase I [Pseudomonas sp. GM60]
gi|398204719|gb|EJM91515.1| pseudouridylate synthase I [Pseudomonas sp. GM67]
Length = 284
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 140/316 (44%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLLCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + LVG HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGTHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SP++ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPVKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L+++ + A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRSGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 253 LYLVQVEYRDEFELPE 268
>gi|322517723|ref|ZP_08070585.1| tRNA pseudouridine synthase A [Streptococcus vestibularis ATCC
49124]
gi|322123654|gb|EFX95247.1| tRNA pseudouridine synthase A [Streptococcus vestibularis ATCC
49124]
Length = 249
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 132/298 (44%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q N R++ LE+ + G PV++ + RTDAGVHA V
Sbjct: 3 RYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYEQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + +R P ++ D+ Q DI + + V +FHAR+ +
Sbjct: 63 IHFDLPQ--ERDPEKLRFGLDT-----------QCPDDIDIVSIELVSEEFHARYNKHSK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYATHYPYPLSLAPMQEAAMELVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQASVS--------------------------------------IDEKTGFYIFTFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS V+ +L++ A P A GL L ++Y+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESCDRNLAGPTAAGNGLYLKEIRYE 248
>gi|167573521|ref|ZP_02366395.1| tRNA pseudouridine synthase A [Burkholderia oklahomensis C6786]
Length = 270
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 131/296 (44%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + ++Y G F G Q Q + +TV LE A +F + +++ RTD GVH V
Sbjct: 2 RIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D E L D S VR N FL S + V + +P FHARF A ERT
Sbjct: 62 HFDTE----------LDRADFSWVR-GTNAFLPST--VSVQWAKPMPDTFHARFAAFERT 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y+Y + P + W V LD+ AM+EA + LVG HDFS+FR+S CQA SPI+
Sbjct: 109 YYYALYVHPVRSPMLAGRAGW-VHMPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPIK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
L ++ + P+G F RA
Sbjct: 168 HLYQISIR-----------------------------PDGDFIHFRF-----------RA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR ++G L AVG G S + +L ++ A+P GL L V Y
Sbjct: 188 NAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLDSRDRDCAAPTFMPEGLYLAHVGY 243
>gi|381152958|ref|ZP_09864827.1| pseudouridylate synthase I [Methylomicrobium album BG8]
gi|380884930|gb|EIC30807.1| pseudouridylate synthase I [Methylomicrobium album BG8]
Length = 268
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 129/298 (43%), Gaps = 54/298 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R ++ +EY G+ FSG Q Q R++ LE A K PV++ + RTDAGVHA
Sbjct: 1 MTRIVLGIEYDGSAFSGWQFQAERRSIQAELERALAKVANHPVTVICAGRTDAGVHALEQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D ++R+P S V H D+ + + DFHAR+ A
Sbjct: 61 VVHFDTA--AEREP--------YSWVMGGNTHL---PDDVRILWAKPAVGDFHARYSAIA 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y IL+ P ++ W LD M +A + L+G HDFSSFRA GCQ+ SP
Sbjct: 108 RFYRYIILNRPVKSALMPTQTTW-CYAPLDADQMHQAARCLIGHHDFSSFRAQGCQSKSP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
R ++H +V + V+ I
Sbjct: 167 FR---QVHFVDVT--------REGDKVIMDI----------------------------- 186
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A +FL+H VR I G L AVG G+ + +L AK A AP GL LG V Y
Sbjct: 187 AANAFLHHMVRNIAGSLIAVGAGKQPADWIRELLAAKKRALAGITAPPHGLYLGGVFY 244
>gi|438001157|ref|YP_007270900.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
gi|432177951|emb|CCP24924.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
Length = 256
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 132/293 (45%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
I +EY GT +SG Q+Q N ++ VLE A G+ V++ S RTDAGVHA V +
Sbjct: 18 ILLEYEGTAYSGWQRQKNAISIQEVLENAIKSITGEAVNVIGSGRTDAGVHALGQVANFK 77
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ + P E LP A+N L DI+V VP DFHARF A+ + Y Y
Sbjct: 78 TQ---TKIPIEKLP--------YAINSKLPE--DIVVKHAEIVPEDFHARFWAKAKIYTY 124
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P S K ++ L++RAM++A +L+G HDF+SF AS S +R ++
Sbjct: 125 TIYNAKFP-SPLLKRYSYFYPRPLNVRAMKKAADMLIGTHDFASFMASNSPVKSTVRCIE 183
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
L V + NG F I A F
Sbjct: 184 RLEVFQ-----------------------------NGDIVKFEI-----------EANGF 203
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+I G L VG + +D+ I+K+K + A P GL L V Y
Sbjct: 204 LYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGKTLPPQGLCLIKVIY 256
>gi|407362657|ref|ZP_11109189.1| tRNA pseudouridine synthase A [Pseudomonas mandelii JR-1]
Length = 274
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 140/316 (44%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLLCAGRTDAGVHACGQV 67
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 68 VHFDTQVERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + LVG HDFS+F
Sbjct: 111 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGTHDFSAF 162
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 163 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 192
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L+++ + A G
Sbjct: 193 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRSGGVTAHPFG 242
Query: 347 LSLGFVKY----DLPE 358
L L V+Y LPE
Sbjct: 243 LYLVQVEYRDEFQLPE 258
>gi|398928066|ref|ZP_10663260.1| pseudouridylate synthase I [Pseudomonas sp. GM48]
gi|398168999|gb|EJM56995.1| pseudouridylate synthase I [Pseudomonas sp. GM48]
Length = 284
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 140/316 (44%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKRKP--GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWTMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + L+G HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEVTWNHRPLDVERMAEAAQYLLGTHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L+++ + A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRSGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 253 LYLVQVEYRDEFELPE 268
>gi|421464664|ref|ZP_15913354.1| tRNA pseudouridine(38-40) synthase [Acinetobacter radioresistens
WC-A-157]
gi|421855103|ref|ZP_16287484.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|400205417|gb|EJO36398.1| tRNA pseudouridine(38-40) synthase [Acinetobacter radioresistens
WC-A-157]
gi|403189421|dbj|GAB73685.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 265
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 137/304 (45%), Gaps = 59/304 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQ-KQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+QRY + +E+ G R+ G Q +Q +V LE K + + + + RTDAGVHA +
Sbjct: 1 MQRYAVGIEFCGIRYRGWQTQQAGVPSVQETLERVLSKIADEKIILHGAGRTDAGVHATN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D I + G ++ +S + + +LQ G+ DFHARF+A
Sbjct: 61 MVAHFDTHAIRTER-GWMMGS-NSQLPKDIALQWLQPMGE-----------DFHARFKAC 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y Y I + P ++ K HV ++LD+ M+EA K G H+F SFRA+ CQ+N
Sbjct: 108 ARRYRYVIYNAPYRPALLHKQVT-HVYQQLDIEKMKEAAKKFRGVHNFESFRAAACQSNQ 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIR +V LF +H Y V+
Sbjct: 167 PIR--------DVTHCELF---------------------------------EHGRYLVL 185
Query: 296 -ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+A FL+H VR IVG L VG G + ++ I A+ AA APA GL F++
Sbjct: 186 DIQANGFLHHMVRNIVGCLLEVGQGMYDIGHIDSIFAAEDRRAAGMTAPADGLY--FIQA 243
Query: 355 DLPE 358
PE
Sbjct: 244 YYPE 247
>gi|374298040|ref|YP_005048231.1| pseudouridylate synthase I [Clostridium clariflavum DSM 19732]
gi|359827534|gb|AEV70307.1| pseudouridylate synthase I [Clostridium clariflavum DSM 19732]
Length = 244
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT + G Q Q N +TV G +E+A H G+ ++I+ SSRTD GVHA V +
Sbjct: 6 LTIEYDGTNYHGWQAQSNAKTVQGTIEKAIHGLTGEKIAITGSSRTDQGVHAYGQVANFF 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+PP S A+N L DI++ V DFHAR+ ++ + Y Y
Sbjct: 66 TN--------SNIPPERFSY---ALNRMLPD--DIVIKKSEEVSMDFHARYCSKGKKYRY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P +++ ++RA+H++ LDL M A + G HDFS+FRA+G + + +RT+
Sbjct: 113 LIYNNSFPSAIY-RNRAYHISHRLDLEKMNRAIEFFKGTHDFSAFRATGSSSKTSVRTIF 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
++ ++ F F
Sbjct: 172 DVSLTSKEDLICFE----------------------------------------VSGDGF 191
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR++VG + VG G + D+ I+++ A AP GL L V Y
Sbjct: 192 LYNMVRIMVGTIVDVGMGRIEAEDIPDIIESLDRRRAGRTAPPQGLYLVEVYY 244
>gi|432637568|ref|ZP_19873438.1| tRNA pseudouridine synthase A [Escherichia coli KTE81]
gi|431170762|gb|ELE70951.1| tRNA pseudouridine synthase A [Escherichia coli KTE81]
Length = 270
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 141/315 (44%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H + + K + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVHFETTALRK-----------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +FL+H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFLHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|182418813|ref|ZP_02950078.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521]
gi|237666467|ref|ZP_04526452.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377310|gb|EDT74871.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521]
gi|237657666|gb|EEP55221.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 244
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 135/293 (46%), Gaps = 54/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +E+ G+ F G QKQ RTV V+EEA K G+ + I+ SSRTD+GVHA + +
Sbjct: 6 LTIEFDGSEFCGWQKQPKGRTVQKVIEEAIFKATGEEIIINGSSRTDSGVHAKDMIANFF 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ PG+ R A+N ++ D+ + V DFHAR+ ++ +TY Y
Sbjct: 66 T---NSTIPGDKF--------REALN--VRLPKDVSIIRSEEVSEDFHARYSSKGKTYSY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I+ E +S F +H +LD+ M+EACK +G HDF +F + G + +RT+
Sbjct: 113 TIIHRYERVS-FGHQYVYHWRHDLDIDNMREACKYFIGTHDFRAFMSPGSSIKTTVRTIT 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
+LH+ + N K+ ++ A F
Sbjct: 172 DLHIEQ---------------------NGEKI-------------------KIFVSADGF 191
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+IVG L VG +L D++ I++ A + P GL L V Y
Sbjct: 192 LYNMVRIIVGTLIKVGNKKLKPEDIQDIIREGNRKRAGMVVPPNGLVLEKVFY 244
>gi|452972629|gb|EME72458.1| tRNA pseudouridine synthase A [Bacillus sonorensis L12]
Length = 247
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 133/295 (45%), Gaps = 58/295 (19%)
Query: 64 VEYIGTRFSGSQKQLNCRTVVGVLEEAF---HKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+ Y G F G Q Q RTV LE A HK + + + S RTD+GVHA H
Sbjct: 7 ISYDGHLFYGYQVQPGQRTVQDELERALKTLHK-SKERIPVVASGRTDSGVHAVGQTIHF 65
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
D ++ E P+ A+N L DI VT V FHARF A+++ Y
Sbjct: 66 D----TQLSIPETKWPY-------ALNALLPD--DIAVTKAEAVDDQFHARFSAKKKEYR 112
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y I G L+VF++ A+HV ELDL+ +++A + LVG HDF+SF + + +RT+
Sbjct: 113 YMIYRGRH-LNVFKRHYAYHVPYELDLQMVEKAAQHLVGTHDFTSFCTAKTEVKDKVRTI 171
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
EL SE L M GS
Sbjct: 172 YELEWSE---------------------TEDGLQMRIVGS-------------------G 191
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY+ VR+I G L VGTG+ D+E+++ AK AA APA GL L V YD
Sbjct: 192 FLYNMVRIIAGTLLDVGTGKFLPDDIEKMIAAKNRDAAGRTAPAHGLYLWNVIYD 246
>gi|326203861|ref|ZP_08193723.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782]
gi|325985959|gb|EGD46793.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782]
Length = 245
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 133/293 (45%), Gaps = 53/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
I +EY GT + G Q Q N +TV +++A K +G+ V ++ SRTD GVHA V H
Sbjct: 6 IIIEYDGTNYHGWQVQKNAKTVQETVQKAISKLLGEGVGVTGCSRTDVGVHAYGQVAHFL 65
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ + PG+ A+N+ L DI++ V +FHAR+ + + Y Y
Sbjct: 66 TD---SQIPGDKFS--------YAINNLLPD--DIVIKHSEEVSEEFHARYSTKGKKYRY 112
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P P S ++R+ HV LD+ M++A + +G HDF++F+A+G Q S +R +
Sbjct: 113 LIYNAPHP-SAIMRNRSCHVRPVLDIEQMKKAARYFIGEHDFAAFQATGGQVRSTVREIY 171
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
+ VS ++ ++ F
Sbjct: 172 SMEVSGKEDNMIYIEVS---------------------------------------GNGF 192
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
LY+ VR+I G L VG G+L S++ I+ T + APA GL L + Y
Sbjct: 193 LYNMVRIIAGTLIYVGMGKLQESEIPGIIAGLDRTKSGKTAPAQGLYLMEIYY 245
>gi|322418344|ref|YP_004197567.1| tRNA pseudouridine synthase A [Geobacter sp. M18]
gi|320124731|gb|ADW12291.1| tRNA pseudouridine synthase A [Geobacter sp. M18]
Length = 250
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 129/295 (43%), Gaps = 58/295 (19%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT +SG Q Q N TV V+E+A + +G+ + S RTDAGVHA V
Sbjct: 6 LIIEYDGTAYSGWQVQPNGVTVQAVMEDALSRMLGERTPLHASGRTDAGVHARGMVACF- 64
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
K G+ +P R +N L S DI V + VP FH RF AQ + Y Y
Sbjct: 65 -------KTGKTMP---LRAFREGLNTLLPS--DIAVREAAEVPLGFHPRFDAQAKHYRY 112
Query: 182 RILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRT 239
+L PLS + AW + +LDL AM+ AC V VG HDF++FR + C A + +R
Sbjct: 113 TMLLDDLRSPLS---RHTAWRIKGKLDLEAMRAACTVFVGEHDFAAFRGANCAAKTTVRR 169
Query: 240 LDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARAR 299
+ + + + +D + I S
Sbjct: 170 IYSMEL-----------VQEDRLLHLDIKGS----------------------------- 189
Query: 300 SFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL + VR+I G L VG G L +DV R+LK A P GL L V Y
Sbjct: 190 GFLKNMVRIITGTLVDVGQGRLGAADVARLLKGGDRQNAGMTVPPQGLCLMRVFY 244
>gi|157137669|ref|XP_001657123.1| hypothetical protein AaeL_AAEL003683 [Aedes aegypti]
gi|108880780|gb|EAT45005.1| AAEL003683-PA [Aedes aegypti]
Length = 325
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 162/350 (46%), Gaps = 74/350 (21%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQL--------NCRTVVGVLEEAFHKFIGQPVS---ISLSS 105
+ RYLI + YIGT F G QK L + +V GVLE A KF PV+ I LSS
Sbjct: 1 MNRYLINLSYIGTHFRGIQKNLLKDSGYLEDPHSVEGVLEIALKKF--APVNEFKIKLSS 58
Query: 106 RTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCV 164
RTDAGVHA N HVD+ER S + P+ + + + +N S+G I + D + V
Sbjct: 59 RTDAGVHALHNTVHVDLERPSGK-------PYKTYKLTQGLNRTFGSQGLPIRILDTKLV 111
Query: 165 PSDFHARFRAQERTYFYRI-LSGPE--------PLSVF----EKDRAWHVT-EELDLRAM 210
P HAR A+ RTY YR+ + P+ P + F E DR + + + D+ +
Sbjct: 112 PMSCHARLCAKSRTYLYRLGVLRPQYCDKVESHPFNRFVPIDEYDRCYFIAHKHFDIERL 171
Query: 211 QEACKVLVGCHDFSSF----RASGCQANSP--IRTLDELHVSEVVSTALFSSINQDSPVL 264
+ G HDF +F R + Q + +RT++ + + +S A S+ N++
Sbjct: 172 KRVASTFQGYHDFRTFMSVARGNDRQHDPSFTLRTIEHISIDRGISMA--SAFNREQA-- 227
Query: 265 SSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVS 324
+ + +++ + RSFLY QVR +VG L+
Sbjct: 228 ---------------------ERYYDYWDIRIKGRSFLYKQVRRMVGAWIGAAENRLSER 266
Query: 325 DVERILKA---KTVTAASPMAPACGLSLGFVKYD-----LPEDDQTDAAE 366
D+ R+L ++ + +APA GL L V+YD P+D+ AAE
Sbjct: 267 DIYRMLTVPSQRSWCDQAVVAPAYGLFLCRVEYDPSDLEFPKDELPGAAE 316
>gi|91211615|ref|YP_541601.1| tRNA pseudouridine synthase A [Escherichia coli UTI89]
gi|110642522|ref|YP_670252.1| tRNA pseudouridine synthase A [Escherichia coli 536]
gi|117624508|ref|YP_853421.1| tRNA pseudouridine synthase A [Escherichia coli APEC O1]
gi|157155365|ref|YP_001463662.1| tRNA pseudouridine synthase A [Escherichia coli E24377A]
gi|191170294|ref|ZP_03031848.1| tRNA pseudouridine synthase A [Escherichia coli F11]
gi|215487531|ref|YP_002329962.1| tRNA pseudouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218559231|ref|YP_002392144.1| tRNA pseudouridine synthase A [Escherichia coli S88]
gi|218690478|ref|YP_002398690.1| tRNA pseudouridine synthase A [Escherichia coli ED1a]
gi|237704797|ref|ZP_04535278.1| tRNA pseudouridylate synthase I [Escherichia sp. 3_2_53FAA]
gi|300928489|ref|ZP_07144015.1| tRNA pseudouridine synthase A [Escherichia coli MS 187-1]
gi|300986858|ref|ZP_07177840.1| tRNA pseudouridine synthase A [Escherichia coli MS 200-1]
gi|306814570|ref|ZP_07448732.1| tRNA pseudouridine synthase A [Escherichia coli NC101]
gi|312967618|ref|ZP_07781833.1| tRNA pseudouridine synthase A [Escherichia coli 2362-75]
gi|331647974|ref|ZP_08349066.1| tRNA pseudouridine synthase A [Escherichia coli M605]
gi|331658401|ref|ZP_08359363.1| tRNA pseudouridine synthase A [Escherichia coli TA206]
gi|331683990|ref|ZP_08384586.1| tRNA pseudouridine synthase A [Escherichia coli H299]
gi|386600194|ref|YP_006101700.1| tRNA pseudouridine synthase A [Escherichia coli IHE3034]
gi|386603661|ref|YP_006109961.1| tRNA pseudouridine synthase A [Escherichia coli UM146]
gi|386619936|ref|YP_006139516.1| tRNA pseudouridine synthase A [Escherichia coli NA114]
gi|387830248|ref|YP_003350185.1| tRNA pseudouridine synthase A [Escherichia coli SE15]
gi|415840500|ref|ZP_11521928.1| tRNA pseudouridine synthase A [Escherichia coli RN587/1]
gi|416335503|ref|ZP_11672196.1| tRNA pseudouridine synthase A [Escherichia coli WV_060327]
gi|417085583|ref|ZP_11953011.1| tRNA pseudouridine synthase A [Escherichia coli cloneA_i1]
gi|417281652|ref|ZP_12068952.1| tRNA pseudouridine synthase A [Escherichia coli 3003]
gi|417286442|ref|ZP_12073731.1| tRNA pseudouridine synthase A [Escherichia coli TW07793]
gi|417756577|ref|ZP_12404652.1| tRNA pseudouridine synthase A [Escherichia coli DEC2B]
gi|418997768|ref|ZP_13545362.1| tRNA pseudouridine synthase A [Escherichia coli DEC1A]
gi|419002868|ref|ZP_13550395.1| tRNA pseudouridine synthase A [Escherichia coli DEC1B]
gi|419008561|ref|ZP_13555992.1| tRNA pseudouridine synthase A [Escherichia coli DEC1C]
gi|419014245|ref|ZP_13561595.1| tRNA pseudouridine synthase A [Escherichia coli DEC1D]
gi|419019244|ref|ZP_13566551.1| tRNA pseudouridine synthase A [Escherichia coli DEC1E]
gi|419024747|ref|ZP_13571973.1| tRNA pseudouridine synthase A [Escherichia coli DEC2A]
gi|419029785|ref|ZP_13576948.1| tRNA pseudouridine synthase A [Escherichia coli DEC2C]
gi|419035174|ref|ZP_13582260.1| tRNA pseudouridine synthase A [Escherichia coli DEC2D]
gi|419040473|ref|ZP_13587501.1| tRNA pseudouridine synthase A [Escherichia coli DEC2E]
gi|419701151|ref|ZP_14228753.1| tRNA pseudouridine synthase A [Escherichia coli SCI-07]
gi|419914576|ref|ZP_14432970.1| tRNA pseudouridine synthase A [Escherichia coli KD1]
gi|419947256|ref|ZP_14463611.1| tRNA pseudouridine synthase A [Escherichia coli HM605]
gi|422357894|ref|ZP_16438555.1| tRNA pseudouridine synthase A [Escherichia coli MS 110-3]
gi|422370097|ref|ZP_16450491.1| tRNA pseudouridine synthase A [Escherichia coli MS 16-3]
gi|422379495|ref|ZP_16459690.1| tRNA pseudouridine synthase A [Escherichia coli MS 57-2]
gi|422749596|ref|ZP_16803508.1| tRNA pseudouridine synthase A [Escherichia coli H252]
gi|422755740|ref|ZP_16809564.1| tRNA pseudouridine synthase A [Escherichia coli H263]
gi|422837630|ref|ZP_16885603.1| tRNA pseudouridine synthase A [Escherichia coli H397]
gi|425278617|ref|ZP_18669863.1| tRNA pseudouridine synthase A [Escherichia coli ARS4.2123]
gi|425301184|ref|ZP_18691081.1| tRNA pseudouridine synthase A [Escherichia coli 07798]
gi|432358661|ref|ZP_19601886.1| tRNA pseudouridine synthase A [Escherichia coli KTE4]
gi|432363395|ref|ZP_19606561.1| tRNA pseudouridine synthase A [Escherichia coli KTE5]
gi|432382056|ref|ZP_19624999.1| tRNA pseudouridine synthase A [Escherichia coli KTE15]
gi|432387869|ref|ZP_19630757.1| tRNA pseudouridine synthase A [Escherichia coli KTE16]
gi|432398144|ref|ZP_19640925.1| tRNA pseudouridine synthase A [Escherichia coli KTE25]
gi|432407372|ref|ZP_19650081.1| tRNA pseudouridine synthase A [Escherichia coli KTE28]
gi|432422663|ref|ZP_19665208.1| tRNA pseudouridine synthase A [Escherichia coli KTE178]
gi|432466477|ref|ZP_19708565.1| tRNA pseudouridine synthase A [Escherichia coli KTE205]
gi|432471684|ref|ZP_19713729.1| tRNA pseudouridine synthase A [Escherichia coli KTE206]
gi|432500801|ref|ZP_19742558.1| tRNA pseudouridine synthase A [Escherichia coli KTE216]
gi|432514619|ref|ZP_19751842.1| tRNA pseudouridine synthase A [Escherichia coli KTE224]
gi|432559565|ref|ZP_19796234.1| tRNA pseudouridine synthase A [Escherichia coli KTE49]
gi|432574395|ref|ZP_19810875.1| tRNA pseudouridine synthase A [Escherichia coli KTE55]
gi|432584572|ref|ZP_19820965.1| tRNA pseudouridine synthase A [Escherichia coli KTE57]
gi|432588643|ref|ZP_19824999.1| tRNA pseudouridine synthase A [Escherichia coli KTE58]
gi|432598303|ref|ZP_19834578.1| tRNA pseudouridine synthase A [Escherichia coli KTE62]
gi|432612126|ref|ZP_19848288.1| tRNA pseudouridine synthase A [Escherichia coli KTE72]
gi|432617420|ref|ZP_19853534.1| tRNA pseudouridine synthase A [Escherichia coli KTE75]
gi|432646889|ref|ZP_19882678.1| tRNA pseudouridine synthase A [Escherichia coli KTE86]
gi|432656471|ref|ZP_19892174.1| tRNA pseudouridine synthase A [Escherichia coli KTE93]
gi|432695177|ref|ZP_19930375.1| tRNA pseudouridine synthase A [Escherichia coli KTE162]
gi|432699748|ref|ZP_19934901.1| tRNA pseudouridine synthase A [Escherichia coli KTE169]
gi|432711369|ref|ZP_19946428.1| tRNA pseudouridine synthase A [Escherichia coli KTE6]
gi|432714096|ref|ZP_19949135.1| tRNA pseudouridine synthase A [Escherichia coli KTE8]
gi|432723768|ref|ZP_19958688.1| tRNA pseudouridine synthase A [Escherichia coli KTE17]
gi|432728355|ref|ZP_19963234.1| tRNA pseudouridine synthase A [Escherichia coli KTE18]
gi|432733052|ref|ZP_19967884.1| tRNA pseudouridine synthase A [Escherichia coli KTE45]
gi|432742049|ref|ZP_19976768.1| tRNA pseudouridine synthase A [Escherichia coli KTE23]
gi|432746360|ref|ZP_19981025.1| tRNA pseudouridine synthase A [Escherichia coli KTE43]
gi|432755131|ref|ZP_19989680.1| tRNA pseudouridine synthase A [Escherichia coli KTE22]
gi|432760137|ref|ZP_19994631.1| tRNA pseudouridine synthase A [Escherichia coli KTE46]
gi|432779265|ref|ZP_20013498.1| tRNA pseudouridine synthase A [Escherichia coli KTE59]
gi|432788203|ref|ZP_20022334.1| tRNA pseudouridine synthase A [Escherichia coli KTE65]
gi|432802535|ref|ZP_20036514.1| tRNA pseudouridine synthase A [Escherichia coli KTE84]
gi|432821652|ref|ZP_20055343.1| tRNA pseudouridine synthase A [Escherichia coli KTE118]
gi|432827784|ref|ZP_20061435.1| tRNA pseudouridine synthase A [Escherichia coli KTE123]
gi|432895334|ref|ZP_20107054.1| tRNA pseudouridine synthase A [Escherichia coli KTE165]
gi|432899335|ref|ZP_20110027.1| tRNA pseudouridine synthase A [Escherichia coli KTE192]
gi|432905607|ref|ZP_20114442.1| tRNA pseudouridine synthase A [Escherichia coli KTE194]
gi|432919826|ref|ZP_20123892.1| tRNA pseudouridine synthase A [Escherichia coli KTE173]
gi|432927713|ref|ZP_20129110.1| tRNA pseudouridine synthase A [Escherichia coli KTE175]
gi|432938703|ref|ZP_20136946.1| tRNA pseudouridine synthase A [Escherichia coli KTE183]
gi|432948190|ref|ZP_20143346.1| tRNA pseudouridine synthase A [Escherichia coli KTE196]
gi|432972519|ref|ZP_20161386.1| tRNA pseudouridine synthase A [Escherichia coli KTE207]
gi|432981743|ref|ZP_20170518.1| tRNA pseudouridine synthase A [Escherichia coli KTE211]
gi|432986076|ref|ZP_20174798.1| tRNA pseudouridine synthase A [Escherichia coli KTE215]
gi|432991356|ref|ZP_20180020.1| tRNA pseudouridine synthase A [Escherichia coli KTE217]
gi|433005774|ref|ZP_20194202.1| tRNA pseudouridine synthase A [Escherichia coli KTE227]
gi|433008356|ref|ZP_20196773.1| tRNA pseudouridine synthase A [Escherichia coli KTE229]
gi|433029292|ref|ZP_20217151.1| tRNA pseudouridine synthase A [Escherichia coli KTE109]
gi|433039316|ref|ZP_20226915.1| tRNA pseudouridine synthase A [Escherichia coli KTE113]
gi|433043894|ref|ZP_20231389.1| tRNA pseudouridine synthase A [Escherichia coli KTE117]
gi|433073518|ref|ZP_20260171.1| tRNA pseudouridine synthase A [Escherichia coli KTE129]
gi|433078496|ref|ZP_20265032.1| tRNA pseudouridine synthase A [Escherichia coli KTE131]
gi|433083275|ref|ZP_20269731.1| tRNA pseudouridine synthase A [Escherichia coli KTE133]
gi|433097185|ref|ZP_20283369.1| tRNA pseudouridine synthase A [Escherichia coli KTE139]
gi|433101862|ref|ZP_20287948.1| tRNA pseudouridine synthase A [Escherichia coli KTE145]
gi|433106607|ref|ZP_20292582.1| tRNA pseudouridine synthase A [Escherichia coli KTE148]
gi|433111567|ref|ZP_20297432.1| tRNA pseudouridine synthase A [Escherichia coli KTE150]
gi|433120915|ref|ZP_20306587.1| tRNA pseudouridine synthase A [Escherichia coli KTE157]
gi|433144915|ref|ZP_20330057.1| tRNA pseudouridine synthase A [Escherichia coli KTE168]
gi|433154438|ref|ZP_20339379.1| tRNA pseudouridine synthase A [Escherichia coli KTE176]
gi|433164190|ref|ZP_20348928.1| tRNA pseudouridine synthase A [Escherichia coli KTE179]
gi|433169295|ref|ZP_20353923.1| tRNA pseudouridine synthase A [Escherichia coli KTE180]
gi|433183989|ref|ZP_20368238.1| tRNA pseudouridine synthase A [Escherichia coli KTE85]
gi|433189100|ref|ZP_20373198.1| tRNA pseudouridine synthase A [Escherichia coli KTE88]
gi|433198951|ref|ZP_20382852.1| tRNA pseudouridine synthase A [Escherichia coli KTE94]
gi|450190880|ref|ZP_21891041.1| tRNA pseudouridine synthase A [Escherichia coli SEPT362]
gi|123049014|sp|Q0TFC8.1|TRUA_ECOL5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|123084414|sp|Q1R994.1|TRUA_ECOUT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166228696|sp|A1ADG7.1|TRUA_ECOK1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166991161|sp|A7ZPD3.1|TRUA_ECO24 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226708650|sp|B7MG82.1|TRUA_ECO45 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254789634|sp|B7UFX6.1|TRUA_ECO27 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254789636|sp|B7MXZ5.1|TRUA_ECO81 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91073189|gb|ABE08070.1| tRNA pseudouridylate synthase I [Escherichia coli UTI89]
gi|110344114|gb|ABG70351.1| tRNA pseudouridine synthase A [Escherichia coli 536]
gi|115513632|gb|ABJ01707.1| tRNA pseudouridine synthase A [Escherichia coli APEC O1]
gi|157077395|gb|ABV17103.1| tRNA pseudouridine synthase A [Escherichia coli E24377A]
gi|190909810|gb|EDV69395.1| tRNA pseudouridine synthase A [Escherichia coli F11]
gi|215265603|emb|CAS10006.1| pseudouridylate synthase I [Escherichia coli O127:H6 str. E2348/69]
gi|218366000|emb|CAR03744.1| pseudouridylate synthase I [Escherichia coli S88]
gi|218428042|emb|CAR08961.2| pseudouridylate synthase I [Escherichia coli ED1a]
gi|226901163|gb|EEH87422.1| tRNA pseudouridylate synthase I [Escherichia sp. 3_2_53FAA]
gi|281179405|dbj|BAI55735.1| tRNA pseudouridine synthase A [Escherichia coli SE15]
gi|294491901|gb|ADE90657.1| tRNA pseudouridine synthase A [Escherichia coli IHE3034]
gi|300306347|gb|EFJ60867.1| tRNA pseudouridine synthase A [Escherichia coli MS 200-1]
gi|300463484|gb|EFK26977.1| tRNA pseudouridine synthase A [Escherichia coli MS 187-1]
gi|305851964|gb|EFM52416.1| tRNA pseudouridine synthase A [Escherichia coli NC101]
gi|307626145|gb|ADN70449.1| tRNA pseudouridine synthase A [Escherichia coli UM146]
gi|312287815|gb|EFR15720.1| tRNA pseudouridine synthase A [Escherichia coli 2362-75]
gi|315288292|gb|EFU47691.1| tRNA pseudouridine synthase A [Escherichia coli MS 110-3]
gi|315298147|gb|EFU57411.1| tRNA pseudouridine synthase A [Escherichia coli MS 16-3]
gi|320196186|gb|EFW70810.1| tRNA pseudouridine synthase A [Escherichia coli WV_060327]
gi|323187957|gb|EFZ73252.1| tRNA pseudouridine synthase A [Escherichia coli RN587/1]
gi|323952111|gb|EGB47985.1| tRNA pseudouridine synthase A [Escherichia coli H252]
gi|323955889|gb|EGB51643.1| tRNA pseudouridine synthase A [Escherichia coli H263]
gi|324009238|gb|EGB78457.1| tRNA pseudouridine synthase A [Escherichia coli MS 57-2]
gi|331043698|gb|EGI15836.1| tRNA pseudouridine synthase A [Escherichia coli M605]
gi|331056649|gb|EGI28658.1| tRNA pseudouridine synthase A [Escherichia coli TA206]
gi|331078942|gb|EGI50144.1| tRNA pseudouridine synthase A [Escherichia coli H299]
gi|333970437|gb|AEG37242.1| tRNA pseudouridine synthase A [Escherichia coli NA114]
gi|355351355|gb|EHG00547.1| tRNA pseudouridine synthase A [Escherichia coli cloneA_i1]
gi|371610539|gb|EHN99067.1| tRNA pseudouridine synthase A [Escherichia coli H397]
gi|377843595|gb|EHU08635.1| tRNA pseudouridine synthase A [Escherichia coli DEC1A]
gi|377844079|gb|EHU09116.1| tRNA pseudouridine synthase A [Escherichia coli DEC1C]
gi|377847747|gb|EHU12745.1| tRNA pseudouridine synthase A [Escherichia coli DEC1B]
gi|377857098|gb|EHU21953.1| tRNA pseudouridine synthase A [Escherichia coli DEC1D]
gi|377860298|gb|EHU25124.1| tRNA pseudouridine synthase A [Escherichia coli DEC1E]
gi|377863531|gb|EHU28336.1| tRNA pseudouridine synthase A [Escherichia coli DEC2A]
gi|377873993|gb|EHU38624.1| tRNA pseudouridine synthase A [Escherichia coli DEC2B]
gi|377877967|gb|EHU42556.1| tRNA pseudouridine synthase A [Escherichia coli DEC2C]
gi|377879530|gb|EHU44102.1| tRNA pseudouridine synthase A [Escherichia coli DEC2D]
gi|377890513|gb|EHU54970.1| tRNA pseudouridine synthase A [Escherichia coli DEC2E]
gi|380347897|gb|EIA36183.1| tRNA pseudouridine synthase A [Escherichia coli SCI-07]
gi|386245981|gb|EII87711.1| tRNA pseudouridine synthase A [Escherichia coli 3003]
gi|386249901|gb|EII96070.1| tRNA pseudouridine synthase A [Escherichia coli TW07793]
gi|388386201|gb|EIL47855.1| tRNA pseudouridine synthase A [Escherichia coli KD1]
gi|388410941|gb|EIL71135.1| tRNA pseudouridine synthase A [Escherichia coli HM605]
gi|408201989|gb|EKI27123.1| tRNA pseudouridine synthase A [Escherichia coli ARS4.2123]
gi|408213264|gb|EKI37754.1| tRNA pseudouridine synthase A [Escherichia coli 07798]
gi|430876903|gb|ELC00369.1| tRNA pseudouridine synthase A [Escherichia coli KTE4]
gi|430886127|gb|ELC08988.1| tRNA pseudouridine synthase A [Escherichia coli KTE5]
gi|430906068|gb|ELC27674.1| tRNA pseudouridine synthase A [Escherichia coli KTE16]
gi|430907531|gb|ELC29029.1| tRNA pseudouridine synthase A [Escherichia coli KTE15]
gi|430916248|gb|ELC37326.1| tRNA pseudouridine synthase A [Escherichia coli KTE25]
gi|430930131|gb|ELC50640.1| tRNA pseudouridine synthase A [Escherichia coli KTE28]
gi|430944275|gb|ELC64374.1| tRNA pseudouridine synthase A [Escherichia coli KTE178]
gi|430993283|gb|ELD09637.1| tRNA pseudouridine synthase A [Escherichia coli KTE205]
gi|430997688|gb|ELD13944.1| tRNA pseudouridine synthase A [Escherichia coli KTE206]
gi|431028378|gb|ELD41422.1| tRNA pseudouridine synthase A [Escherichia coli KTE216]
gi|431041375|gb|ELD51876.1| tRNA pseudouridine synthase A [Escherichia coli KTE224]
gi|431090785|gb|ELD96536.1| tRNA pseudouridine synthase A [Escherichia coli KTE49]
gi|431107993|gb|ELE12157.1| tRNA pseudouridine synthase A [Escherichia coli KTE55]
gi|431115568|gb|ELE19066.1| tRNA pseudouridine synthase A [Escherichia coli KTE57]
gi|431120976|gb|ELE23974.1| tRNA pseudouridine synthase A [Escherichia coli KTE58]
gi|431130255|gb|ELE32360.1| tRNA pseudouridine synthase A [Escherichia coli KTE62]
gi|431148300|gb|ELE49591.1| tRNA pseudouridine synthase A [Escherichia coli KTE72]
gi|431153840|gb|ELE54735.1| tRNA pseudouridine synthase A [Escherichia coli KTE75]
gi|431179544|gb|ELE79436.1| tRNA pseudouridine synthase A [Escherichia coli KTE86]
gi|431190337|gb|ELE89736.1| tRNA pseudouridine synthase A [Escherichia coli KTE93]
gi|431233265|gb|ELF28856.1| tRNA pseudouridine synthase A [Escherichia coli KTE162]
gi|431242724|gb|ELF37114.1| tRNA pseudouridine synthase A [Escherichia coli KTE169]
gi|431248698|gb|ELF42887.1| tRNA pseudouridine synthase A [Escherichia coli KTE6]
gi|431256391|gb|ELF49464.1| tRNA pseudouridine synthase A [Escherichia coli KTE8]
gi|431266322|gb|ELF57884.1| tRNA pseudouridine synthase A [Escherichia coli KTE17]
gi|431274044|gb|ELF65118.1| tRNA pseudouridine synthase A [Escherichia coli KTE18]
gi|431275267|gb|ELF66311.1| tRNA pseudouridine synthase A [Escherichia coli KTE45]
gi|431283740|gb|ELF74599.1| tRNA pseudouridine synthase A [Escherichia coli KTE23]
gi|431290898|gb|ELF81421.1| tRNA pseudouridine synthase A [Escherichia coli KTE43]
gi|431301860|gb|ELF91057.1| tRNA pseudouridine synthase A [Escherichia coli KTE22]
gi|431307791|gb|ELF96081.1| tRNA pseudouridine synthase A [Escherichia coli KTE46]
gi|431326081|gb|ELG13443.1| tRNA pseudouridine synthase A [Escherichia coli KTE59]
gi|431336770|gb|ELG23871.1| tRNA pseudouridine synthase A [Escherichia coli KTE65]
gi|431348324|gb|ELG35182.1| tRNA pseudouridine synthase A [Escherichia coli KTE84]
gi|431367304|gb|ELG53781.1| tRNA pseudouridine synthase A [Escherichia coli KTE118]
gi|431371980|gb|ELG57682.1| tRNA pseudouridine synthase A [Escherichia coli KTE123]
gi|431421701|gb|ELH03913.1| tRNA pseudouridine synthase A [Escherichia coli KTE165]
gi|431426987|gb|ELH09031.1| tRNA pseudouridine synthase A [Escherichia coli KTE192]
gi|431432121|gb|ELH13893.1| tRNA pseudouridine synthase A [Escherichia coli KTE194]
gi|431442854|gb|ELH23933.1| tRNA pseudouridine synthase A [Escherichia coli KTE173]
gi|431443511|gb|ELH24538.1| tRNA pseudouridine synthase A [Escherichia coli KTE175]
gi|431458168|gb|ELH38505.1| tRNA pseudouridine synthase A [Escherichia coli KTE196]
gi|431462689|gb|ELH42896.1| tRNA pseudouridine synthase A [Escherichia coli KTE183]
gi|431482021|gb|ELH61728.1| tRNA pseudouridine synthase A [Escherichia coli KTE207]
gi|431491052|gb|ELH70659.1| tRNA pseudouridine synthase A [Escherichia coli KTE211]
gi|431495438|gb|ELH75024.1| tRNA pseudouridine synthase A [Escherichia coli KTE217]
gi|431499541|gb|ELH78562.1| tRNA pseudouridine synthase A [Escherichia coli KTE215]
gi|431513472|gb|ELH91554.1| tRNA pseudouridine synthase A [Escherichia coli KTE227]
gi|431523686|gb|ELI00823.1| tRNA pseudouridine synthase A [Escherichia coli KTE229]
gi|431543032|gb|ELI18028.1| tRNA pseudouridine synthase A [Escherichia coli KTE109]
gi|431551416|gb|ELI25402.1| tRNA pseudouridine synthase A [Escherichia coli KTE113]
gi|431555732|gb|ELI29571.1| tRNA pseudouridine synthase A [Escherichia coli KTE117]
gi|431587422|gb|ELI58796.1| tRNA pseudouridine synthase A [Escherichia coli KTE129]
gi|431596191|gb|ELI66152.1| tRNA pseudouridine synthase A [Escherichia coli KTE131]
gi|431601399|gb|ELI70915.1| tRNA pseudouridine synthase A [Escherichia coli KTE133]
gi|431615533|gb|ELI84662.1| tRNA pseudouridine synthase A [Escherichia coli KTE139]
gi|431619456|gb|ELI88380.1| tRNA pseudouridine synthase A [Escherichia coli KTE145]
gi|431627314|gb|ELI95725.1| tRNA pseudouridine synthase A [Escherichia coli KTE148]
gi|431628871|gb|ELI97247.1| tRNA pseudouridine synthase A [Escherichia coli KTE150]
gi|431642516|gb|ELJ10239.1| tRNA pseudouridine synthase A [Escherichia coli KTE157]
gi|431660892|gb|ELJ27749.1| tRNA pseudouridine synthase A [Escherichia coli KTE168]
gi|431673680|gb|ELJ39871.1| tRNA pseudouridine synthase A [Escherichia coli KTE176]
gi|431687495|gb|ELJ53046.1| tRNA pseudouridine synthase A [Escherichia coli KTE179]
gi|431688147|gb|ELJ53688.1| tRNA pseudouridine synthase A [Escherichia coli KTE180]
gi|431705806|gb|ELJ70396.1| tRNA pseudouridine synthase A [Escherichia coli KTE88]
gi|431706025|gb|ELJ70609.1| tRNA pseudouridine synthase A [Escherichia coli KTE85]
gi|431721115|gb|ELJ85113.1| tRNA pseudouridine synthase A [Escherichia coli KTE94]
gi|449320188|gb|EMD10225.1| tRNA pseudouridine synthase A [Escherichia coli SEPT362]
Length = 270
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+R+ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|218548227|ref|YP_002382018.1| tRNA pseudouridine synthase A [Escherichia fergusonii ATCC 35469]
gi|422806317|ref|ZP_16854749.1| tRNA pseudouridine synthase A [Escherichia fergusonii B253]
gi|424815622|ref|ZP_18240773.1| tRNA pseudouridine synthase A [Escherichia fergusonii ECD227]
gi|226708655|sp|B7LLF2.1|TRUA_ESCF3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|218355768|emb|CAQ88381.1| pseudouridylate synthase I [Escherichia fergusonii ATCC 35469]
gi|324112855|gb|EGC06831.1| tRNA pseudouridine synthase A [Escherichia fergusonii B253]
gi|325496642|gb|EGC94501.1| tRNA pseudouridine synthase A [Escherichia fergusonii ECD227]
Length = 270
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 142/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+R+ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFVKY----DLPE 358
L V Y DLP+
Sbjct: 246 YLVAVDYPDRFDLPK 260
>gi|73541994|ref|YP_296514.1| tRNA pseudouridine synthase A [Ralstonia eutropha JMP134]
gi|123774054|sp|Q46YW3.1|TRUA_CUPPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|72119407|gb|AAZ61670.1| tRNA pseudouridine synthase [Ralstonia eutropha JMP134]
Length = 273
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 147/316 (46%), Gaps = 64/316 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R I + Y G FSG Q Q + TV LE++ +F G + +++ RTDAGVHA
Sbjct: 1 MNRIAIGLHYDGAAFSGWQSQPHRNTVQDYLEDSIERFAGVRLLTTVAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D + + V R +N FL I + R V FHARF A E
Sbjct: 61 VIHLDTT-LDRTTFSWV----------RGINAFLPPS--IALQWARPVDESFHARFLAFE 107
Query: 177 RTYFYRILSGPE--PLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFRASG 230
R Y+Y + +GP PL+ RA ++ + LD+ AMQ A + L+G DFSSFRA+
Sbjct: 108 RMYYYALYTGPHRVPLA---HGRAGYLMLPPGQRLDVDAMQAASRCLLGEQDFSSFRAAE 164
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
CQA SP++T+ ++ ++ D G+ VF
Sbjct: 165 CQAKSPVKTMYDV------------TLKAD------------------GNWVF------- 187
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
+ RA +FL+H VR ++G L AVG G + +L A+ A+P GL L
Sbjct: 188 ---LRFRASAFLHHMVRNLMGCLVAVGRGRYPPEWLAEVLAARDRKLAAPTFMPDGLYLA 244
Query: 351 FVKYDLPEDDQTDAAE 366
VKY PE + AA+
Sbjct: 245 DVKY--PEAYKIPAAD 258
>gi|212637986|ref|YP_002314506.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1]
gi|226708641|sp|B7GJ99.1|TRUA_ANOFW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|212559466|gb|ACJ32521.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1]
Length = 246
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 137/302 (45%), Gaps = 60/302 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAF---HKFIGQPVSISLSSRTDAGVHA 113
++R + Y GT F+G Q Q RTV G LE A HK GQ V + S RTDA VHA
Sbjct: 1 MRRIKCTIAYDGTNFAGYQIQQQKRTVQGELERALSIIHK--GQFVRVYASGRTDATVHA 58
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D P E P +A+N L D++V + VPS FHARF
Sbjct: 59 YGQVIHFDTPLTI---PDERWP--------KALNALLPD--DVIVKEASEVPSSFHARFS 105
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+++ Y YR+ G + +VF + +H ++ + AM EA + L+G HDF+SF ++ +
Sbjct: 106 VKKKEYRYRVWIGEK--NVFLRHYVYHHPYDVSVPAMNEALRYLIGTHDFTSFCSAKTEV 163
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+ +RT+ E V + +F + NG
Sbjct: 164 DDKVRTIYEAEVVQEGEELIFRLVG------------------NG--------------- 190
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
FLY+ VR+IVG + VG GE +++ IL+ K + A AP GL L V
Sbjct: 191 -------FLYNMVRIIVGTVLEVGRGERCAEEIKTILEQKNRSVAGKTAPGHGLYLWHVS 243
Query: 354 YD 355
YD
Sbjct: 244 YD 245
>gi|350561680|ref|ZP_08930518.1| tRNA pseudouridine synthase A [Thioalkalivibrio thiocyanoxidans ARh
4]
gi|349780712|gb|EGZ35030.1| tRNA pseudouridine synthase A [Thioalkalivibrio thiocyanoxidans ARh
4]
Length = 281
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 128/302 (42%), Gaps = 62/302 (20%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
QR+ + VEY G+ F G Q+Q + +V +E+A G PV + + RTDAGVHA V
Sbjct: 7 QRWALGVEYDGSGFVGWQRQKDGPSVQAAVEQALGFVAGHPVDLHCAGRTDAGVHATGQV 66
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG----DIMVTDVRCVPSDFHARFR 173
H D++ +R N L + + + R V DFHARF
Sbjct: 67 IHF-----------------DTTALRDERNWLLGANARLPEAVALLWARPVSRDFHARFS 109
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
AQ R Y Y I + ++ + AW LD M EA + L+G HDFSS RA+ CQA
Sbjct: 110 AQGRRYRYVIANQAVRPALQARGVAW-WRYPLDAGRMHEAAQALLGTHDFSSLRAAACQA 168
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S I+T+ + V ++ R
Sbjct: 169 RSAIKTVHSIRV----------------------------------------HRQGRYVV 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ A +FL+H VR I GVL +G G V I+ A+ A+ APA GL L V
Sbjct: 189 LDVHANAFLHHMVRNIAGVLLPIGQGRRDAGWVHEIMNARDRRASGITAPAGGLYLVGVD 248
Query: 354 YD 355
YD
Sbjct: 249 YD 250
>gi|392988462|ref|YP_006487055.1| tRNA pseudouridine synthase A [Enterococcus hirae ATCC 9790]
gi|392335882|gb|AFM70164.1| tRNA pseudouridine synthase A [Enterococcus hirae ATCC 9790]
Length = 249
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 137/294 (46%), Gaps = 55/294 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+ +EY G R+SG Q+ + +T+ G +E + G+ + I S RTD+G HA V
Sbjct: 9 LTIEYDGKRYSGWQRLGDDDKTIQGKIEAIISQMTGEKIEIIGSGRTDSGTHARGQVA-- 66
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ + S+ E+L +N +L DI++ V +P FHAR+ A + Y
Sbjct: 67 NFKTTSQMSRNEMLT---------FLNRYLPR--DIVIKKVEEMPERFHARYNATGKKYS 115
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y + + P P +VFE++ +++ +ELDL M EAC+ L+G HDF F A S +RT+
Sbjct: 116 YYVWNNPIP-TVFERNHSFYFPQELDLEKMNEACQKLMGSHDFIGFSALKKSKKSTVRTI 174
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
EL SI Q+ +L H ++
Sbjct: 175 HEL------------SIEQEGGML------------------------HFTF----VGNG 194
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY VR+++G L +GTG+L VS ++ I + K A PA GL L V Y
Sbjct: 195 FLYKMVRILMGTLLEIGTGKLPVSAIDDIFENKVRQQAGETVPAHGLFLDEVYY 248
>gi|71737567|ref|YP_273899.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558120|gb|AAZ37331.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 274
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 134/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDV--ERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T R +P+ FHARF+
Sbjct: 68 VHFDTQAERTMKAWVMGANINLPHDVSV-----------------TWARVMPATFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M A + LVG HDFS+FRA CQA
Sbjct: 111 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMALAAEYLVGTHDFSAFRAGQCQA 169
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 170 KSPVKQLHHLRVT-----------------------------------------RHGKMI 188
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +GTGE V +L+++ A GL L V
Sbjct: 189 VIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAHPYGLYLVQV 248
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 249 EYRDEFPLPE 258
>gi|398870515|ref|ZP_10625839.1| pseudouridylate synthase I [Pseudomonas sp. GM74]
gi|398888740|ref|ZP_10642909.1| pseudouridylate synthase I [Pseudomonas sp. GM55]
gi|398954217|ref|ZP_10675846.1| pseudouridylate synthase I [Pseudomonas sp. GM33]
gi|398152677|gb|EJM41190.1| pseudouridylate synthase I [Pseudomonas sp. GM33]
gi|398190277|gb|EJM77510.1| pseudouridylate synthase I [Pseudomonas sp. GM55]
gi|398208285|gb|EJM95022.1| pseudouridylate synthase I [Pseudomonas sp. GM74]
Length = 284
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 139/316 (43%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKRKP--GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWTMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + L+G HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEVTWNHRPLDVERMAEAAQYLLGTHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L+++ A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRTGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 253 LYLVQVEYRDEFELPE 268
>gi|347539310|ref|YP_004846735.1| tRNA pseudouridine synthase A [Pseudogulbenkiania sp. NH8B]
gi|345642488|dbj|BAK76321.1| tRNA pseudouridine synthase A [Pseudogulbenkiania sp. NH8B]
Length = 262
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 134/308 (43%), Gaps = 56/308 (18%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G F+G Q Q + TV L A P++ + RTDAGVHA V
Sbjct: 1 MRVALGVEYDGRAFAGWQSQPHGNTVQDKLNLALSHIACAPINTVAAGRTDAGVHALMQV 60
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H DVE V P ++ V R VN L + DI V + V +FHARF A R
Sbjct: 61 VHFDVE---------VERPENAWV--RGVNSHLPA--DIAVVWAKQVGEEFHARFSAFSR 107
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
+Y Y +L+ P + W+ + LD+ AM+EA L+G HDFSSFRA+ CQA SP+
Sbjct: 108 SYSYFLLTHPVRSCLLAGKVGWY-HQPLDVEAMREAAAHLLGRHDFSSFRAAECQAKSPV 166
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+ L L + E F +
Sbjct: 167 KHLQRLDIHEADGFIRFDLL---------------------------------------- 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +FL+H VR IVG L VG G L+ D+ +L A+ A P GL L V Y P
Sbjct: 187 ADAFLHHMVRNIVGALVYVGKGTLSPEDMVDLLSARDRRHAPPTFMPDGLYLTGVGY--P 244
Query: 358 EDDQTDAA 365
E AA
Sbjct: 245 ESFGVTAA 252
>gi|297618350|ref|YP_003703509.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
gi|297146187|gb|ADI02944.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
Length = 244
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 131/291 (45%), Gaps = 54/291 (18%)
Query: 64 VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVE 123
VEY GTR+SG Q+Q T+ G LE A K G+ V + + RTDAGVHA V D E
Sbjct: 8 VEYEGTRYSGFQRQPRGLTIEGELEAAICKLTGERVKVLAAGRTDAGVHALGQVIAFDTE 67
Query: 124 RISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRI 183
+PP + A+N L S DI V FH R++A+ + Y Y I
Sbjct: 68 --------SPIPPERFAP---ALNSVLPS--DIRVLKSEKAKEGFHPRYQARAKAYRYLI 114
Query: 184 LSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDEL 243
E F ++ A++ + LDL AM +A + + G HDF +F ASG + +RT+ E+
Sbjct: 115 YRQEEG-RTFYRNLAYYYPQPLDLPAMAKAARYMEGTHDFMAFCASGSGVRNYVRTVFEV 173
Query: 244 HVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLY 303
SIN+ P L ID FLY
Sbjct: 174 ------------SINEKPPFL-QIDVCGD---------------------------GFLY 193
Query: 304 HQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+ VR++VG L VG L +VE+IL ++ A P PACGL L V Y
Sbjct: 194 NMVRIMVGTLLEVGRKRLAPEEVEQILLSRDRQRAGPTVPACGLYLKRVFY 244
>gi|237800363|ref|ZP_04588824.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023220|gb|EGI03277.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 284
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 134/310 (43%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T R +P++FHARF+
Sbjct: 78 VHFDTLAERSLKAWVMGANINLPHDVSV-----------------TWARVMPANFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEFLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ L L V+ +H
Sbjct: 180 KSPVKQLHHLRVT-----------------------------------------RHGKMI 198
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +G GE V +L+++ A GL L V
Sbjct: 199 VIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYLVQV 258
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 259 EYRDEFPLPE 268
>gi|256956829|ref|ZP_05561000.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5]
gi|257078499|ref|ZP_05572860.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1]
gi|294781084|ref|ZP_06746435.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1]
gi|300861778|ref|ZP_07107858.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11]
gi|307269121|ref|ZP_07550482.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248]
gi|307286980|ref|ZP_07567055.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109]
gi|312901088|ref|ZP_07760376.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470]
gi|422702632|ref|ZP_16760461.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302]
gi|422709536|ref|ZP_16766917.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027]
gi|422721643|ref|ZP_16778230.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
gi|422738792|ref|ZP_16793979.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141]
gi|428765863|ref|YP_007151974.1| tRNA pseudouridine synthase A [Enterococcus faecalis str.
Symbioflor 1]
gi|256947325|gb|EEU63957.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5]
gi|256986529|gb|EEU73831.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1]
gi|294451887|gb|EFG20338.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1]
gi|295112531|emb|CBL31168.1| pseudouridylate synthase I [Enterococcus sp. 7L76]
gi|300848303|gb|EFK76060.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11]
gi|306501926|gb|EFM71215.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109]
gi|306514601|gb|EFM83155.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248]
gi|311291760|gb|EFQ70316.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470]
gi|315031173|gb|EFT43105.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
gi|315035981|gb|EFT47913.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027]
gi|315145370|gb|EFT89386.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141]
gi|315165868|gb|EFU09885.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302]
gi|427184036|emb|CCO71260.1| tRNA pseudouridine synthase A [Enterococcus faecalis str.
Symbioflor 1]
Length = 249
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 135/302 (44%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F G QKQ N RTV +E+ + G V++ S RTDAGVHA
Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + +P E + R A++ Q+ DI V V V DFHAR+
Sbjct: 61 QVIHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARYHVI 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG
Sbjct: 108 EKTYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVED 166
Query: 236 PIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
IRT+ E +HV+E F+
Sbjct: 167 KIRTIHEASVHVNETGDELTFT-------------------------------------- 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY +R++VG L +G G L + + I+ AK A P A GL L VK
Sbjct: 189 --FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVK 246
Query: 354 YD 355
Y+
Sbjct: 247 YE 248
>gi|125623329|ref|YP_001031812.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
MG1363]
gi|389853654|ref|YP_006355898.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
NZ9000]
gi|166228735|sp|A2RIH1.1|TRUA_LACLM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|124492137|emb|CAL97066.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
MG1363]
gi|300070076|gb|ADJ59476.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 253
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 131/300 (43%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F+G Q Q N RTV +E+ K +PV + S RTD+GVHA
Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ ++ D +R ++ Q+ DI V V VP D+HAR++
Sbjct: 61 QVIHFDLNGKAR----------DLERLRFGLD--TQTPADIAVKKVELVPDDWHARYQKH 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY Y L S F + + L+ MQ A LVG HDF+ F ASG +
Sbjct: 109 EKTYEY-YLENSVTRSPFHRHSKAYFRYPLNFERMQGAMVKLVGQHDFTGFTASGSSVDD 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ + + I+ +++ I
Sbjct: 168 KVRTIYQAEI---------------------------------------IQLDKENFKFI 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY QVR +VG + +G + VS +++IL +K A P A GL L VKY+
Sbjct: 189 FRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGPTAAPEGLYLKEVKYE 248
>gi|268597753|ref|ZP_06131920.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19]
gi|268551541|gb|EEZ46560.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19]
Length = 265
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 140/307 (45%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ TV LE A + G+ V+ +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V H D + P + V R VN L EG I V R V FH
Sbjct: 60 GVHATAQVVHFDTAAVR---------PAQAWV--RGVNAHL-PEG-IAVLHARQVAPGFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M+ A +LVG DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESAPVRSPL---LKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+GCQA SP++T+ +++ S L +D
Sbjct: 164 AAGCQAKSPVKTIYRTGLTQ-------------SAGLIRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|224825086|ref|ZP_03698192.1| tRNA pseudouridine synthase A [Pseudogulbenkiania ferrooxidans
2002]
gi|224602757|gb|EEG08934.1| tRNA pseudouridine synthase A [Pseudogulbenkiania ferrooxidans
2002]
Length = 262
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 134/308 (43%), Gaps = 56/308 (18%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G F+G Q Q + TV L A P++ + RTDAGVHA V
Sbjct: 1 MRVALGVEYDGRAFAGWQSQPHGNTVQDKLNLALSHIACAPINTVAAGRTDAGVHALMQV 60
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H DVE V P ++ V R VN L + DI V + V +FHARF A R
Sbjct: 61 VHFDVE---------VERPENAWV--RGVNSHLPA--DIAVVWAKQVDEEFHARFSAFSR 107
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
+Y Y +L+ P + W+ + LD+ AM+EA L+G HDFSSFRA+ CQA SP+
Sbjct: 108 SYSYFLLTHPVRSCLLAGKVGWY-HQPLDVEAMREAAAHLLGRHDFSSFRAAECQAKSPV 166
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+ L L + E F +
Sbjct: 167 KHLQRLDIHEADGFIRFDLL---------------------------------------- 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +FL+H VR IVG L VG G L+ D+ +L A+ A P GL L V Y P
Sbjct: 187 ADAFLHHMVRNIVGALVYVGKGTLSPEDMVDLLSARDRRHAPPTFMPDGLYLTGVGY--P 244
Query: 358 EDDQTDAA 365
E AA
Sbjct: 245 ESFGVTAA 252
>gi|387824461|ref|YP_005823932.1| tRNA pseudouridine synthase A [Francisella cf. novicida 3523]
gi|328676060|gb|AEB28735.1| tRNA pseudouridine synthase A [Francisella cf. novicida 3523]
Length = 258
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 141/306 (46%), Gaps = 64/306 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + ++ LE+A K + + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQAELEKALSKIANRNIEVTCAGRTDTGVHATSQ 60
Query: 117 VC--HVDVER-ISKRKPG-EVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
V H D +R +S + G L PH DI + + V DF++RF
Sbjct: 61 VVNFHSDADRPLSAWQRGANALLPH-----------------DIKILAAQEVNDDFNSRF 103
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
A RTY Y I + +F + W ELD+ M +AC+ L+G DFSSFR+S CQ
Sbjct: 104 TAINRTYNYIIYNSATSSPIFAEHCLWE-NRELDIDKMNQACEYLLGEQDFSSFRSSQCQ 162
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
+N+P R + + I Q S ++ +
Sbjct: 163 SNTPFRNIQKAEF-----------IKQGSFIV---------------------------F 184
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
EV+ A FL+H +R +VG L VG G + ++ +L+AK T A+ A A GL FV
Sbjct: 185 EVVGNA--FLHHMIRNLVGSLLKVGLGFESPEWIKLVLEAKDRTQAAETAKAHGLY--FV 240
Query: 353 KYDLPE 358
+ PE
Sbjct: 241 GVEYPE 246
>gi|71906507|ref|YP_284094.1| tRNA pseudouridine synthase A [Dechloromonas aromatica RCB]
gi|123774503|sp|Q47HQ7.1|TRUA_DECAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|71846128|gb|AAZ45624.1| tRNA pseudouridine synthase [Dechloromonas aromatica RCB]
Length = 262
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 129/291 (44%), Gaps = 58/291 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT F G Q Q TV LE A + G PV + + RTDAGVHA V
Sbjct: 2 RVALGIEYCGTGFHGWQSQAGGGTVQDALEAALGEVAGVPVGVLCAGRTDAGVHATHQVA 61
Query: 119 HVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D V+R P + V R VN L EG + V + V DFHARF A+
Sbjct: 62 HFDAPVDR-----------PLTAWV--RGVNSHL-PEG-VAVRWAQPVAEDFHARFSARG 106
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y +L+ P+ +++ W L+L AMQEAC L+G HDFS+FRA+ CQA SP
Sbjct: 107 RRYRYLLLNRPQRPGLWQGRVGW-FHWPLELEAMQEACLRLLGEHDFSAFRAANCQAKSP 165
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++ + V + + +F
Sbjct: 166 VKHMSRAEVRQCGNMFVFDF---------------------------------------- 185
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
A +FL+H VR +VG L +G G +E +L+ K A+P GL
Sbjct: 186 EASAFLHHMVRNLVGTLVYIGKGTQQPDWIEALLQTKDRKLAAPTFSPDGL 236
>gi|402701693|ref|ZP_10849672.1| tRNA pseudouridine synthase A [Pseudomonas fragi A22]
Length = 274
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 135/301 (44%), Gaps = 63/301 (20%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+SG Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYSGWQRQASGVLTVQETLENALSKVAASPVSLLCAGRTDAGVHACGQV 67
Query: 118 CHVDV--ERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD I V+ + +P+ FHARF+
Sbjct: 68 VHFDTMAERSLKAWVMGANINLPHD-----------------ISVSWAKVMPAHFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M EA + L+G HDFS+FRA CQA
Sbjct: 111 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAEAARYLLGVHDFSAFRAGQCQA 169
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++ + L V+ +G V I
Sbjct: 170 KSPVKEMHHLRVTR-----------------------------HGQMIVLDI-------- 192
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL +GTGE V ++ +L+++ + A GL L V+
Sbjct: 193 ---RASAFLHHMVRNIAGVLMTIGTGERPVEWMKEVLESRVRRSGGVTAHPYGLYLVQVE 249
Query: 354 Y 354
Y
Sbjct: 250 Y 250
>gi|113868577|ref|YP_727066.1| tRNA pseudouridine synthase A [Ralstonia eutropha H16]
gi|123032833|sp|Q0K8H3.1|TRUA_CUPNH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|113527353|emb|CAJ93698.1| transfer RNA-pseudouridine synthase I [Ralstonia eutropha H16]
Length = 272
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 144/313 (46%), Gaps = 58/313 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + + Y G FSG Q Q + TV LE A +F G + +++ RTD GVHA
Sbjct: 1 MNRIALGLHYDGAAFSGWQSQPHRNTVQDHLENAIERFAGVRLLTTVAGRTDTGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D +R+P + R VN FL I + V FHARF A E
Sbjct: 61 VIHLDTA--LEREPFSWV---------RGVNAFLPPS--IALQWALPVDQGFHARFLAFE 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVT---EELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
R Y+Y + +GP + + + + + LD+ AM+EA L+G HDFS+FRA+ CQA
Sbjct: 108 RMYYYALYTGPHRVPLVHGRAGYQMLPPGQRLDVDAMREAAACLLGEHDFSAFRAAECQA 167
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SP++T+ ++ +I D G+ VF
Sbjct: 168 KSPVKTMYDV------------TIRDD------------------GNWVF---------- 187
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ RA +FL+H VR ++G L AVG G + ++L + A+P GL L VK
Sbjct: 188 LRFRASAFLHHMVRNLMGCLVAVGRGRYPAHWLAQVLAGRERKLAAPTFMPDGLYLVGVK 247
Query: 354 YDLPEDDQTDAAE 366
Y P+ Q AA+
Sbjct: 248 Y--PDPYQIPAAD 258
>gi|189220286|ref|YP_001940926.1| pseudouridylate synthase [Methylacidiphilum infernorum V4]
gi|259550415|sp|B3E0A0.1|TRUA_METI4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189187144|gb|ACD84329.1| Pseudouridylate synthase [Methylacidiphilum infernorum V4]
Length = 255
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 138/311 (44%), Gaps = 57/311 (18%)
Query: 53 TNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVH 112
N + Y + + Y G+ F G Q+Q TV LEEA K +P+ + + RTDAGVH
Sbjct: 1 MNLAVVGYKLTLSYCGSGFHGWQRQGELPTVQRALEEAVAKIWEEPIPVEGAGRTDAGVH 60
Query: 113 AASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARF 172
A V R K +P V++RA+N+ L + V D R VP +F ARF
Sbjct: 61 AKGQVASFAAPR--KLEP---------EVLKRALNYHLPD--TVRVWDARIVPREFSARF 107
Query: 173 RAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS-GC 231
A +TY Y + + P + F RAWH+ +D+ M EA ++ +G H+F++F ++ G
Sbjct: 108 DAVSKTYQYLLWNDPV-MDPFYLGRAWHIPRAMDVEMMNEAARLFLGKHNFAAFVSNPGM 166
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
+P+RT+ + E S F+
Sbjct: 167 PVKNPVRTVLDCFFLEQGSLVFFN------------------------------------ 190
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
+A FLY VR +VG L VG G L+ ++++I + + A AP GL L
Sbjct: 191 ----VKADGFLYRMVRNMVGALVKVGLGRLSRQELKKIFENQKRIEAFAAAPPWGLYL-- 244
Query: 352 VKYDLPEDDQT 362
+ D P D ++
Sbjct: 245 LAVDYPPDQES 255
>gi|254228474|ref|ZP_04921900.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|262393647|ref|YP_003285501.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|451976153|ref|ZP_21927321.1| tRNA pseudouridine synthase A [Vibrio alginolyticus E0666]
gi|151939062|gb|EDN57894.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|262337241|gb|ACY51036.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|451929882|gb|EMD77608.1| tRNA pseudouridine synthase A [Vibrio alginolyticus E0666]
Length = 264
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 134/306 (43%), Gaps = 66/306 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT + G Q+Q ++V LE+A PV + + RTDAGVH V
Sbjct: 2 RIALGIEYNGTNYFGWQRQREVKSVQEELEKALSVIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG----DIMVTDVRCVPSDFHARFRA 174
H D++V R+ V + + DI V + VP DFHARF A
Sbjct: 62 HF-----------------DTNVTRKMVAWTMGANANMPSDIAVRWAKEVPDDFHARFSA 104
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R Y Y I + + + H ELD + M EA + L+G +DF+SFRA+ CQ+
Sbjct: 105 TARRYRYIIFNHALRPGILNSGVS-HYHGELDEKKMHEAGQYLLGENDFTSFRAAHCQSR 163
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
SP R L L+V+ +H +Y V
Sbjct: 164 SPFRNLMHLNVT-----------------------------------------RHGNYVV 182
Query: 295 I-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
I +A +F++H VR I G L VG GE + ++ +L+AK A A A GL L V
Sbjct: 183 IDIKANAFVHHMVRNITGSLIKVGRGEESPEWIKWLLEAKDRKLAGATAKAEGLYL--VD 240
Query: 354 YDLPED 359
D PE+
Sbjct: 241 VDYPEE 246
>gi|426410342|ref|YP_007030441.1| tRNA pseudouridine synthase A [Pseudomonas sp. UW4]
gi|426268559|gb|AFY20636.1| tRNA pseudouridine synthase A [Pseudomonas sp. UW4]
Length = 284
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 139/316 (43%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVD--VERISKRKP--GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D VER K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQVERSMKAWTMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD+ M EA + L+G HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEVTWNHRPLDVERMAEAAQYLLGTHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ L L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKELHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +G GE V ++ +L+++ + A G
Sbjct: 203 ----------RASAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRIRRSGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y LPE
Sbjct: 253 LYLVQVEYRDEFQLPE 268
>gi|416165260|ref|ZP_11607384.1| tRNA pseudouridine synthase A [Neisseria meningitidis N1568]
gi|433474364|ref|ZP_20431717.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 97021]
gi|433482794|ref|ZP_20440045.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 2006087]
gi|433484809|ref|ZP_20442023.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 2002038]
gi|433487040|ref|ZP_20444227.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 97014]
gi|325127315|gb|EGC50250.1| tRNA pseudouridine synthase A [Neisseria meningitidis N1568]
gi|432207245|gb|ELK63237.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 97021]
gi|432214114|gb|ELK70021.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 2006087]
gi|432219046|gb|ELK74894.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 2002038]
gi|432220025|gb|ELK75852.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 97014]
Length = 265
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 142/307 (46%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ + TV LE A + G+ VS +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V H D + P + V R VN L EG I V R V +FH
Sbjct: 60 GVHATAQVVHFDTTAVR---------PQQAWV--RGVNAHL-PEG-IAVLHARQVAPEFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M++A +L+G DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESAPVRSPLL---KNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+ CQA SP++T+ +++ S L +D
Sbjct: 164 AAECQAKSPVKTIYRADLTQ-------------SSGLVRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|399116028|emb|CCG18832.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis 14/45]
Length = 268
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 128/305 (41%), Gaps = 58/305 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + + Y G + G Q Q N T+ LE A KF V+ + RTD GVHA V
Sbjct: 4 RVALGISYDGRDYQGWQTQPNGLTIQDFLEAALFKFTNNKVNTICAGRTDTGVHAIGQVV 63
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D E +++ V R VN L I V + VP +F ARF A RT
Sbjct: 64 HFDTE-VTRELESWV----------RGVNAHLPDS--IRVRWAQEVPDEFSARFSATHRT 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y +L LS RA LD+ M A + +G HDFSSFR+S CQA+SPIR
Sbjct: 111 YVY-LLRNERVLSPIWSGRAGWDFHNLDIEGMNIATQSFIGTHDFSSFRSSQCQASSPIR 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
+LD L + P L +F + RA
Sbjct: 170 SLDTL------------KLEAKGPFL-----------------IFTL-----------RA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV----KY 354
FL+H VR I+G L VG G + ++ AK ++P GL V KY
Sbjct: 190 NGFLHHMVRNIIGALLYVGMGRFKAEYISELIDAKDRKFSAPTFMPDGLYFACVDYPDKY 249
Query: 355 DLPED 359
D+P++
Sbjct: 250 DIPQN 254
>gi|224369316|ref|YP_002603480.1| protein TruA1 [Desulfobacterium autotrophicum HRM2]
gi|223692033|gb|ACN15316.1| TruA1 [Desulfobacterium autotrophicum HRM2]
Length = 246
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 136/299 (45%), Gaps = 58/299 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAG 110
M TN + + +EY GT +SG Q Q NC TV +E+A + + QP+ IS S RTDAG
Sbjct: 1 MKTN-----FKLTLEYDGTPYSGWQVQNNCPTVQEEIEKALSRMLNQPIRISGSGRTDAG 55
Query: 111 VHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHA 170
VHA V + + ++ ++R++N L+ G I+V + R V FH+
Sbjct: 56 VHALGQVANF-----------QAATTIGAAQLKRSLNSLLK--GPIVVHECRKVDQSFHS 102
Query: 171 RFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASG 230
R+ A+ + Y Y L+ +P V ++ WH+ L + AM+E C ++ G HDF +F SG
Sbjct: 103 RYSARAKEYHYHFLNREDPCGV-GRNYVWHIRTPLSIPAMEECCPIITGTHDFKAFEGSG 161
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
++ +RT LFS+ G + F + K
Sbjct: 162 SPRSTTVRT-------------LFST-----------------GFERTAEDRFTFKIK-- 189
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FL VR IVG L G G++T + + IL+ K A APA GL L
Sbjct: 190 -------GDGFLRFMVRNIVGTLVLAGAGKITPENFKTILEGKDRGRAGATAPAKGLFL 241
>gi|376264444|ref|YP_005117156.1| tRNA pseudouridine synthase A [Bacillus cereus F837/76]
gi|364510244|gb|AEW53643.1| tRNA pseudouridine synthase A [Bacillus cereus F837/76]
Length = 245
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y + ++Y G RF G Q+ N T+ G +E + IG+ + I SRTDAGVHA +
Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + + E L H V++ +N +L + DI +T+V V + FHAR+ ++
Sbjct: 61 QVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVHNRFHARYNSK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F + + S
Sbjct: 108 AKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R E++ EV+ A F I
Sbjct: 167 MVR---EVYSLEVMEEAGFVQIR------------------------------------- 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL++ VR IVG L VG G+L + +IL+AK + +A A GL L V++
Sbjct: 187 VSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGLYLENVEF 245
>gi|260869040|ref|YP_003235442.1| pseudouridylate synthase [Escherichia coli O111:H- str. 11128]
gi|415822801|ref|ZP_11511320.1| tRNA pseudouridine synthase A [Escherichia coli OK1180]
gi|417191965|ref|ZP_12014065.1| tRNA pseudouridine synthase A [Escherichia coli 4.0522]
gi|417208677|ref|ZP_12020408.1| tRNA pseudouridine synthase A [Escherichia coli JB1-95]
gi|417592614|ref|ZP_12243310.1| tRNA pseudouridine synthase A [Escherichia coli 2534-86]
gi|419197826|ref|ZP_13741212.1| tRNA pseudouridine synthase A [Escherichia coli DEC8A]
gi|419204200|ref|ZP_13747382.1| tRNA pseudouridine synthase A [Escherichia coli DEC8B]
gi|419222331|ref|ZP_13765252.1| tRNA pseudouridine synthase A [Escherichia coli DEC8E]
gi|419227575|ref|ZP_13770430.1| tRNA pseudouridine synthase A [Escherichia coli DEC9A]
gi|419233221|ref|ZP_13775997.1| tRNA pseudouridine synthase A [Escherichia coli DEC9B]
gi|419238625|ref|ZP_13781340.1| tRNA pseudouridine synthase A [Escherichia coli DEC9C]
gi|419244092|ref|ZP_13786730.1| tRNA pseudouridine synthase A [Escherichia coli DEC9D]
gi|419249916|ref|ZP_13792499.1| tRNA pseudouridine synthase A [Escherichia coli DEC9E]
gi|419285012|ref|ZP_13827185.1| tRNA pseudouridine synthase A [Escherichia coli DEC10F]
gi|419887695|ref|ZP_14408258.1| tRNA pseudouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|419895617|ref|ZP_14415413.1| tRNA pseudouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|420091059|ref|ZP_14602817.1| tRNA pseudouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|420096141|ref|ZP_14607576.1| tRNA pseudouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|424774348|ref|ZP_18201363.1| tRNA pseudouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257765396|dbj|BAI36891.1| pseudouridylate synthase I [Escherichia coli O111:H- str. 11128]
gi|323176756|gb|EFZ62346.1| tRNA pseudouridine synthase A [Escherichia coli OK1180]
gi|345338453|gb|EGW70883.1| tRNA pseudouridine synthase A [Escherichia coli 2534-86]
gi|378046383|gb|EHW08762.1| tRNA pseudouridine synthase A [Escherichia coli DEC8A]
gi|378048025|gb|EHW10381.1| tRNA pseudouridine synthase A [Escherichia coli DEC8B]
gi|378064906|gb|EHW27056.1| tRNA pseudouridine synthase A [Escherichia coli DEC8E]
gi|378074053|gb|EHW36096.1| tRNA pseudouridine synthase A [Escherichia coli DEC9A]
gi|378076963|gb|EHW38961.1| tRNA pseudouridine synthase A [Escherichia coli DEC9B]
gi|378083664|gb|EHW45595.1| tRNA pseudouridine synthase A [Escherichia coli DEC9C]
gi|378090028|gb|EHW51868.1| tRNA pseudouridine synthase A [Escherichia coli DEC9D]
gi|378094938|gb|EHW56729.1| tRNA pseudouridine synthase A [Escherichia coli DEC9E]
gi|378131352|gb|EHW92710.1| tRNA pseudouridine synthase A [Escherichia coli DEC10F]
gi|386190847|gb|EIH79593.1| tRNA pseudouridine synthase A [Escherichia coli 4.0522]
gi|386196638|gb|EIH90858.1| tRNA pseudouridine synthase A [Escherichia coli JB1-95]
gi|388360379|gb|EIL24598.1| tRNA pseudouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|388362106|gb|EIL26146.1| tRNA pseudouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|394384438|gb|EJE61998.1| tRNA pseudouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|394390373|gb|EJE67387.1| tRNA pseudouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|421934297|gb|EKT92072.1| tRNA pseudouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 270
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V +
Sbjct: 167 VQCQSRTPWRNVMHINV-----------------------------------------MR 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|354807782|ref|ZP_09041238.1| tRNA pseudouridine synthase A [Lactobacillus curvatus CRL 705]
gi|354513729|gb|EHE85720.1| tRNA pseudouridine synthase A [Lactobacillus curvatus CRL 705]
Length = 254
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 138/304 (45%), Gaps = 53/304 (17%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASN 116
QRY + + Y GT F+G Q Q N RTV G LE+A K G + + S RTDAGVHA
Sbjct: 3 QRYRVTIAYDGTDFAGFQVQPNQRTVQGTLEKALTKMSKGAYIQVYGSGRTDAGVHATGQ 62
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D PG+ LP + + RA+N L D+ V D + DFHARF
Sbjct: 63 VVHFDY-------PGQ-LP---AISMLRALNSLLPL--DMEVVDSQLADDDFHARFSTVG 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+ Y YR+ G + F++ H +D+ +Q A ++G HD++SF ASG
Sbjct: 110 KRYMYRVDLG-HYTNPFKRRYTGHYPYPIDVERIQAALPDVMGTHDYTSFAASGGVIKDK 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RT+ + +T +FS +++ V N
Sbjct: 169 VRTIYD-------ATVVFSE-SENELVFEFYGN--------------------------- 193
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
FLY+ VR++VG L +G G V D R+ + K A APA GL L V Y+
Sbjct: 194 ---GFLYNMVRILVGTLLEIGNGRRDVHDFLRLYEVKDRQQARSTAPASGLYLKKVYYET 250
Query: 357 PEDD 360
E++
Sbjct: 251 DENN 254
>gi|417828743|ref|ZP_12475294.1| tRNA pseudouridine synthase A [Shigella flexneri J1713]
gi|335574598|gb|EGM60916.1| tRNA pseudouridine synthase A [Shigella flexneri J1713]
Length = 270
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 144/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L S DI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANLPS--DIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|432450472|ref|ZP_19692736.1| tRNA pseudouridine synthase A [Escherichia coli KTE193]
gi|433034151|ref|ZP_20221866.1| tRNA pseudouridine synthase A [Escherichia coli KTE112]
gi|430979455|gb|ELC96231.1| tRNA pseudouridine synthase A [Escherichia coli KTE193]
gi|431550537|gb|ELI24527.1| tRNA pseudouridine synthase A [Escherichia coli KTE112]
Length = 270
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFVKY----DLPE 358
L V Y DLP+
Sbjct: 246 YLVAVDYPDRFDLPK 260
>gi|398803900|ref|ZP_10562906.1| pseudouridylate synthase I [Polaromonas sp. CF318]
gi|398095326|gb|EJL85665.1| pseudouridylate synthase I [Polaromonas sp. CF318]
Length = 264
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 135/305 (44%), Gaps = 58/305 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + + Y G+ + G Q QL+ TV LE A KF QP+ + RTDAGVH V
Sbjct: 2 RIALGISYSGSGYEGWQSQLSGNTVQDKLELALGKFAAQPIRTLCAGRTDAGVHGLMQVV 61
Query: 119 HVD--VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D V+R D + R N FL DI V R VP +FH R A
Sbjct: 62 HFDTFVQR-------------DIASWVRGTNAFLPV--DIAVQWAREVPDEFHCRGSAIA 106
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y +L P SV E R V LD AM++A LVG HDFSSFRA+ CQA SP
Sbjct: 107 RRYAYVVLESPVRPSV-EAGRVGWVYRPLDEAAMRQAATHLVGEHDFSSFRAAQCQAKSP 165
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++T+ + +S G P G R +E
Sbjct: 166 VKTISRITISH-------------------------RGEP-------GARYWRFEFE--- 190
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS-LGFV--- 352
A +FL+H +R I+G L A+G G + ++ A++ AA+P GL LG V
Sbjct: 191 -ANAFLHHMIRNIMGCLVAIGQGSYPPDWLAGVMAARSRDAAAPTFSPDGLYFLGPVYED 249
Query: 353 KYDLP 357
Y LP
Sbjct: 250 HYGLP 254
>gi|229015811|ref|ZP_04172787.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1273]
gi|229022018|ref|ZP_04178574.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1272]
gi|228739274|gb|EEL89714.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1272]
gi|228745470|gb|EEL95496.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1273]
Length = 250
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 144/305 (47%), Gaps = 56/305 (18%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M NK + Y + ++Y G RF G Q+ N T+ G +E + +G+ + I SRTDA
Sbjct: 1 MKENK-MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDA 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V + + E L H V++ +N +L + DI +T+V V FH
Sbjct: 60 GVHALNQVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVQDRFH 106
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
AR+ ++ +TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F +
Sbjct: 107 ARYNSKAKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNA 165
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
+ S +R E++ EV+ A F I
Sbjct: 166 KSKKKSMVR---EVYTLEVMEEAGFVQIR------------------------------- 191
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FL++ VR IVG L VG G+L + IL+ K + +A A GL L
Sbjct: 192 ------VSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEGKQRNQINCLAEASGLYL 245
Query: 350 GFVKY 354
V++
Sbjct: 246 ESVEF 250
>gi|410582551|ref|ZP_11319657.1| pseudouridylate synthase I [Thermaerobacter subterraneus DSM 13965]
gi|410505371|gb|EKP94880.1| pseudouridylate synthase I [Thermaerobacter subterraneus DSM 13965]
Length = 345
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 132/301 (43%), Gaps = 59/301 (19%)
Query: 58 QRYLIAV-EYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
QR L AV Y GT F+G Q+Q RTV V+EEA + +G PV ++ + RTDAGVHA +
Sbjct: 82 QRTLRAVLAYDGTDFAGWQRQAGRRTVQQVVEEALSRLLGHPVRVTAAGRTDAGVHARAQ 141
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H R P E L P A+ L D+ P+ FHAR+ A+
Sbjct: 142 VIHWQTARPF---PAERLVP--------ALRGLLPL--DVAAVAAGEAPAGFHARYAARR 188
Query: 177 RTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+TY Y + P +PL + WH+ LD+ AM EA + L G HDF++F+A+G
Sbjct: 189 KTYVYHLWRAPVADPL---HRRWQWHLPLALDVAAMAEAARRLEGRHDFAAFKAAGSPVR 245
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+ RTL + E P+L +
Sbjct: 246 NTRRTLYRCRLEE------------HGPLL----------------------------RI 265
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+ A FL H R IVG L +G G V+ +L A P APA GL L V+Y
Sbjct: 266 VLEADGFLMHMARGIVGTLVEIGRGRWPAGHVDMLLATGRRQLAGPTAPAHGLVLWRVEY 325
Query: 355 D 355
D
Sbjct: 326 D 326
>gi|366087906|ref|ZP_09454391.1| tRNA pseudouridine synthase A [Lactobacillus zeae KCTC 3804]
Length = 247
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 133/299 (44%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ Y + + Y GT F+G Q Q RTV GVL++A K GQPV + S RTD+GVHA
Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V D PG + P +S + RA+N + DI + V +DFHAR+ A+
Sbjct: 61 QVISFDY-------PGNI--PAESML--RAMNSLMPL--DIEILKAEIVAADFHARYSAK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ G + F + H +LD+ ++ A K LVG HDF+SF ASG
Sbjct: 108 GKRYMYRVARGYYT-NPFNRLYTGHYPYKLDVARIEIALKDLVGTHDFTSFAASGGVIKD 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E V E +T + + N
Sbjct: 167 KVRTIYEATVREDTTT--------NELIFEFYGN-------------------------- 192
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR++V +G G V D +R+ + K A APA GL L V Y
Sbjct: 193 ----GFLYNMVRILVATALEIGNGRREVHDFQRLFEVKDRQQARGTAPASGLYLKEVYY 247
>gi|283786396|ref|YP_003366261.1| tRNA pseudouridine synthase A [Citrobacter rodentium ICC168]
gi|282949850|emb|CBG89473.1| tRNA pseudouridine synthase A [Citrobacter rodentium ICC168]
Length = 269
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 136/306 (44%), Gaps = 60/306 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ + + VEY G+++ G Q+Q R+V LE+A + +P+++ + RTDAGVH
Sbjct: 8 VYKIALGVEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 67
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H + + K + VN L GDI V V+ VP DFHARF A
Sbjct: 68 VVHFETSALRK-----------DAAWTLGVNANL--PGDIAVRWVKAVPEDFHARFSATA 114
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y I + +V K H E LD M A + L+G +DF+SFRA CQ+ +P
Sbjct: 115 RRYRYIIYNHRLRPAVLAKGVT-HYYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTP 173
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI- 295
R + ++VS +H +Y V+
Sbjct: 174 WRNVMHINVS-----------------------------------------RHGAYVVVD 192
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY- 354
+A +F++H VR IVG L VG S + +L AK T A+ A A GL L V Y
Sbjct: 193 IKANAFVHHMVRNIVGSLMEVGAHHQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 252
Query: 355 ---DLP 357
DLP
Sbjct: 253 DRFDLP 258
>gi|410628439|ref|ZP_11339158.1| tRNA pseudouridine38-40 synthase [Glaciecola mesophila KMM 241]
gi|410151915|dbj|GAC25927.1| tRNA pseudouridine38-40 synthase [Glaciecola mesophila KMM 241]
Length = 263
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 127/297 (42%), Gaps = 56/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + VEY G RF G Q+Q +V LEEA + +P+ + + RTDAGVHA V
Sbjct: 2 RIALGVEYDGARFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H + + ++P +N +L I V V+ VP DFHARF A R
Sbjct: 62 HFET---TSQRPDRAWT--------LGINTYLPDT--ISVRWVKAVPEDFHARFSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + + H+ +LD M EA + LVG HDFSSFRA CQA + R
Sbjct: 109 YRYIIYNNTLRSGILANGVT-HIYGDLDHELMNEAAQKLVGKHDFSSFRAVNCQAKTATR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-AR 297
T+ + V K+ Y VI +
Sbjct: 168 TMSHIRV-----------------------------------------KRMGDYIVIDVQ 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A +FL+H VR I G L A+G E V V+ +L+ K T A A GL L V Y
Sbjct: 187 ANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYLVHVTY 243
>gi|451812081|ref|YP_007448535.1| tRNA pseudouridine synthase A [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451777983|gb|AGF48931.1| tRNA pseudouridine synthase A [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 263
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 137/304 (45%), Gaps = 57/304 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ R + + Y G F G Q QLN V ++E A + F G + + + RTDAGVHA +
Sbjct: 1 MYRIAMCISYNGASFCGWQTQLNLCAVQDIIENALYNFSGFKKTRVVCAGRTDAGVHAVN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + +++ V R VN FL + I V + V ++FHARF A
Sbjct: 61 QVIHFDTD-LNREIESWV----------RGVNSFLPNS--ISVKWAQFVDNNFHARFSAI 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
RTYFY I +++ + W LD+ M+ A LVG HDFSSFR+S CQ+ +
Sbjct: 108 SRTYFYIIYCSKVRSAIYNELVGWSFYV-LDVDLMRNAIDFLVGEHDFSSFRSSQCQSKT 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RT+ + IN+ P + VF I
Sbjct: 167 PVRTIYN------------ADINRKGPFI-----------------VFSIT--------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A +FL+H +R IVG L VG G + ++ +L AK T P GL L V+Y
Sbjct: 189 --ANAFLHHMIRNIVGSLIQVGRGNIDPIRIKELLLAKDRTKGFPTFSPNGLYLMNVEY- 245
Query: 356 LPED 359
P D
Sbjct: 246 -PSD 248
>gi|300897000|ref|ZP_07115479.1| tRNA pseudouridine synthase A [Escherichia coli MS 198-1]
gi|300359181|gb|EFJ75051.1| tRNA pseudouridine synthase A [Escherichia coli MS 198-1]
Length = 270
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSAQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|447917429|ref|YP_007397997.1| tRNA pseudouridine synthase A [Pseudomonas poae RE*1-1-14]
gi|445201292|gb|AGE26501.1| tRNA pseudouridine synthase A [Pseudomonas poae RE*1-1-14]
Length = 274
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 134/309 (43%), Gaps = 67/309 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q TV LE A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDV--ERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T + +P+ FHARF+
Sbjct: 68 VHFDTQAERTMKAWVMGANINLPHDVSV-----------------TWAKVMPAHFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M EA + LVG HDFS+FRA CQA
Sbjct: 111 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAEAAQHLVGVHDFSAFRAGQCQA 169
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ + L V+ +G V I
Sbjct: 170 KSPIKEVHHLRVTR-----------------------------HGKMIVLDI-------- 192
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL +GTGE V +L+++ A GL L V+
Sbjct: 193 ---RAGAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRVRRTGGVTAHPFGLYLVGVE 249
Query: 354 Y----DLPE 358
Y +LPE
Sbjct: 250 YRDEFELPE 258
>gi|239814424|ref|YP_002943334.1| tRNA pseudouridine synthase A [Variovorax paradoxus S110]
gi|259550491|sp|C5CSH0.1|TRUA_VARPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239801001|gb|ACS18068.1| tRNA pseudouridine synthase A [Variovorax paradoxus S110]
Length = 270
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 136/312 (43%), Gaps = 56/312 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + + Y G + G Q Q + RTV LE A KF QP+ + RTDAGVHA V
Sbjct: 2 RLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALAKFAAQPIGTLCAGRTDAGVHALMQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D +R+P + R N FL DI V + VP +FH R A R
Sbjct: 62 HFDT--TVEREPFSWM---------RGTNRFLPD--DIAVQWAQPVPDEFHCRASALARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y + P S+ W + LD AM+ A +LVG HDFSSFRAS CQA SP++
Sbjct: 109 YLYVLSQSPVRPSLDSGRVGWSM-HPLDGDAMRAAAALLVGKHDFSSFRASACQARSPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR-KKHRSYEVIAR 297
L + ++ V S G R + H +E
Sbjct: 168 DLRRIEITRVGS---------------------------------GDRCRWHFEFE---- 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL----SLGFVK 353
A +FL+H +R ++G L +G G+ + +L+A++ A+P A GL L K
Sbjct: 191 ADAFLHHMIRNLMGCLVRIGRGDERPEWITEVLEARSRKVAAPTFSANGLYFLGPLYDAK 250
Query: 354 YDLPEDDQTDAA 365
+ LP + A
Sbjct: 251 WGLPAEATLQAG 262
>gi|384228208|ref|YP_005619943.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
gi|345539141|gb|AEO08008.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 265
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 141/312 (45%), Gaps = 58/312 (18%)
Query: 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAA 114
K I+++ + +EY G+ + G Q+Q ++ +E A K +++ + RTDAGVH+
Sbjct: 4 KNIKKFALGIEYNGSSYHGWQRQKKASSIQEEIETALSKIANHKINVVCAGRTDAGVHST 63
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H + K + N +L I V ++ VP +FHAR+ A
Sbjct: 64 GQVVHFSTTTVRKITAWLI-----------GTNSYLSQY--ISVKWIKSVPENFHARYSA 110
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
R+Y Y I+ SVF + + +V ++L+ + M A + L+G HDF+SFRA GCQ+
Sbjct: 111 ITRSYRY-IIYNNRIRSVFFQKKLNYVYKKLNEKKMFSAAQFLLGEHDFTSFRAIGCQSF 169
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
S R + +L++ + + V+ I
Sbjct: 170 SAWRKITKLNIFRL-----------NDFVIIDIT-------------------------- 192
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A SFLYH VR IVG L VG + T ++ +LK K AS APA GL L ++Y
Sbjct: 193 ---ANSFLYHMVRNIVGALIDVGINKKTEFWIQELLKKKNRRYASATAPAQGLYLSSIEY 249
Query: 355 ----DLPEDDQT 362
++P+ T
Sbjct: 250 PLHFNIPDSKNT 261
>gi|330820903|ref|YP_004349765.1| Pseudouridylate synthase [Burkholderia gladioli BSR3]
gi|327372898|gb|AEA64253.1| Pseudouridylate synthase [Burkholderia gladioli BSR3]
Length = 277
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 130/301 (43%), Gaps = 56/301 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + ++Y G F G Q Q + +TV LE A F P+ ++ RTD GVH V
Sbjct: 2 RIALGIQYDGAAFCGWQSQPHGKTVQDELERALKAFALVPLQTVVAGRTDTGVHGLGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + L D S VR N FL S + V + +P FHARF A ERT
Sbjct: 62 HFDTD----------LDRSDFSWVR-GTNAFLPST--VAVQWAKPMPDSFHARFAAFERT 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y+Y + P + W V LD+ AM+EA + L+G HDFSSFR+S CQ+ +P++
Sbjct: 109 YYYALYVHPVRSPMLASRAGW-VHTPLDIEAMREAARHLIGEHDFSSFRSSECQSKTPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
L ++ + S F RA
Sbjct: 168 HLYQIDIRASGSFIHFRF----------------------------------------RA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPE 358
+FL+H VR ++G L AVG G + +L A+ A+P GL L V Y PE
Sbjct: 188 NAFLHHMVRNLMGCLIAVGRGRYPADWMAEVLAARNRERAAPTFAPDGLYLAHVGY--PE 245
Query: 359 D 359
+
Sbjct: 246 E 246
>gi|385340884|ref|YP_005894756.1| tRNA pseudouridine synthase A [Neisseria meningitidis G2136]
gi|433468035|ref|ZP_20425482.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 87255]
gi|325199128|gb|ADY94584.1| tRNA pseudouridine synthase A [Neisseria meningitidis G2136]
gi|432200946|gb|ELK57033.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 87255]
Length = 265
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 142/307 (46%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ + TV LE A + G+ VS +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V H D + P + + R VN L EG I V R V +FH
Sbjct: 60 GVHATAQVVHFDTTAVR---------PQQAWI--RGVNAHL-PEG-IAVLHARQVALEFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M++A L+G DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESSPVRSPLL---KNRAGWTHLKLDIGPMRQAATYLIGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+ CQA SPI+T+ ++++ S L +D
Sbjct: 164 AAECQAKSPIKTIYRANLTQ-------------SAGLVRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|335356520|ref|ZP_08548390.1| tRNA pseudouridine synthase A [Lactobacillus animalis KCTC 3501]
Length = 250
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 132/304 (43%), Gaps = 62/304 (20%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF--IGQPVSISLSSRTDAGVHAAS 115
+RY+I + Y GT F+G Q Q RTV VLE+A +K ++I S RTD+GVHA
Sbjct: 3 KRYMITLAYDGTNFAGFQAQPKQRTVQSVLEKALNKMSKFDDYITIYGSGRTDSGVHALG 62
Query: 116 NVCHVDVERISKRKPGEVLPPHDSS--VVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D PHD S + + +N L D V D + V DFHARF
Sbjct: 63 QVIHFDF-------------PHDISPEGMLKGLNSMLPL--DCEVIDCKIVSDDFHARFT 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+ Y YR+ S F++ H LD++ ++EA +VG HDFSSF ASG Q
Sbjct: 108 THGKRYMYRV-SRSWFTDPFKRFYTGHYKYPLDIKRIEEAMPDVVGTHDFSSFVASGSQT 166
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ E V R+ + E
Sbjct: 167 KDHVRTIYEATV----------------------------------------REDKENNE 186
Query: 294 VIAR--ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
VI FLY+QVR++V L +G G+ V D R+ + K APA GL L
Sbjct: 187 VIFEFYGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRNECRETAPASGLYLKK 246
Query: 352 VKYD 355
V Y+
Sbjct: 247 VYYE 250
>gi|262402660|ref|ZP_06079221.1| tRNA pseudouridine synthase A [Vibrio sp. RC586]
gi|262351442|gb|EEZ00575.1| tRNA pseudouridine synthase A [Vibrio sp. RC586]
Length = 264
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 130/305 (42%), Gaps = 60/305 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT + G Q+Q ++V LE+A K PV + + RTDAGVH V
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + +V + DI V VP DFHARF A R
Sbjct: 62 HFDTTA-------------ERQMVAWTMGANANLPKDIAVRWATAVPDDFHARFSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + + + H ELD+ MQ+A + L+G +DF+SFRA CQ+ SP R
Sbjct: 109 YRYVIYNHVYRPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-AR 297
+ L+V+ +H Y VI +
Sbjct: 168 NVMHLNVT-----------------------------------------RHGRYVVIDLK 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY--- 354
A +F++H VR I G L AVG GE ++ +L+ K T A+ A A GL L V Y
Sbjct: 187 ANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYLVDVDYPAQ 246
Query: 355 -DLPE 358
LPE
Sbjct: 247 FGLPE 251
>gi|385825279|ref|YP_005861621.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii DPC 6026]
gi|329666723|gb|AEB92671.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii DPC 6026]
Length = 263
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 138/307 (44%), Gaps = 53/307 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + + Y G F G Q Q N RTV GV+EEA K G+ V + S RTDAGVHA V
Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQV 63
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D PG+ +P + + A+N + D + + V DFH ++ + +
Sbjct: 64 IHFDY-------PGKEIPAKNMML---ALNALMPI--DTVFFESEIVDEDFHVQYSTKGK 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y I+ F + H LD+ MQ+A K L+G HDF+SF ASG Q +
Sbjct: 112 WYRY-IVDQHRFTDPFNRFYTGHYPYPLDISLMQQAAKDLIGEHDFTSFAASGGQIVDKV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + +I DS KK ++ I
Sbjct: 171 RTI------------YYVNITPDSD------------------------KKQIIFDFIGN 194
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY-DL 356
FLY+ VR++VG L +G + V D+ R+LKAK APA GL L V Y D+
Sbjct: 195 G--FLYNMVRILVGTLLEIGNKKRPVDDIPRVLKAKDRQEVRTTAPASGLYLQQVFYEDI 252
Query: 357 PEDDQTD 363
P+ + D
Sbjct: 253 PKKYRLD 259
>gi|134301921|ref|YP_001121890.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751727|ref|ZP_16188766.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis AS_713]
gi|421753582|ref|ZP_16190573.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 831]
gi|421757308|ref|ZP_16194190.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 80700103]
gi|421759167|ref|ZP_16196001.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 70102010]
gi|424674486|ref|ZP_18111404.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 70001275]
gi|166228700|sp|A4IXW8.1|TRUA_FRATW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|134049698|gb|ABO46769.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409086848|gb|EKM86961.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 831]
gi|409087064|gb|EKM87174.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis AS_713]
gi|409091231|gb|EKM91234.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 70102010]
gi|409092763|gb|EKM92730.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 80700103]
gi|417434964|gb|EKT89896.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 70001275]
Length = 258
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 142/302 (47%), Gaps = 56/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + +V LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQESLEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ V+ + R S +R VN L DI + V+ V ++F++RF A
Sbjct: 61 I--VNFYSNADRPL---------SAWQRGVNALLPQ--DIKILAVQQVDNNFNSRFTAIN 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y I + +F + W ELD+ M +AC+ L+G DFSSFR+S CQ+N+P
Sbjct: 108 RTYNYIIYNSATSSPIFAEHCLWE-NRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
R + + I Q S ++ +EV+
Sbjct: 167 FRNIQKAEF-----------IKQGSFIV---------------------------FEVVG 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
A FL+H +R +VG L VG G + ++ +L+AK T A+ A A GL FV +
Sbjct: 189 NA--FLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY--FVGVEY 244
Query: 357 PE 358
PE
Sbjct: 245 PE 246
>gi|419340766|ref|ZP_13882230.1| tRNA pseudouridine synthase A [Escherichia coli DEC12E]
gi|378187677|gb|EHX48288.1| tRNA pseudouridine synthase A [Escherichia coli DEC12E]
Length = 270
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQDKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPECWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|82544799|ref|YP_408746.1| tRNA pseudouridine synthase A [Shigella boydii Sb227]
gi|417682962|ref|ZP_12332315.1| tRNA pseudouridine synthase A [Shigella boydii 3594-74]
gi|420353706|ref|ZP_14854814.1| tRNA pseudouridine synthase A [Shigella boydii 4444-74]
gi|123728357|sp|Q31YE0.1|TRUA_SHIBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|81246210|gb|ABB66918.1| pseudouridylate synthase I [Shigella boydii Sb227]
gi|332093646|gb|EGI98704.1| tRNA pseudouridine synthase A [Shigella boydii 3594-74]
gi|391278032|gb|EIQ36753.1| tRNA pseudouridine synthase A [Shigella boydii 4444-74]
Length = 270
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 140/315 (44%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E P + VN L DI V V+ VP DF
Sbjct: 61 AGVHGTGQVVHF-----------ETTAPRKDAAWTLGVNANLPD--DIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|386398887|ref|ZP_10083665.1| pseudouridylate synthase I [Bradyrhizobium sp. WSM1253]
gi|385739513|gb|EIG59709.1| pseudouridylate synthase I [Bradyrhizobium sp. WSM1253]
Length = 252
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 133/299 (44%), Gaps = 53/299 (17%)
Query: 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
++ RY + +EY G F G Q Q +V G LE A G + + RTDAGVHA
Sbjct: 7 KMPRYKLTIEYDGAPFFGWQVQETLPSVQGALEAAVKAMTGADARVHGAGRTDAGVHARG 66
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V HVD++ K+ P R +N L+ I V + VP F ARF A
Sbjct: 67 QVAHVDID---KQFP--------QGRFRDGLNAHLRPH-PIAVLEADIVPETFEARFSAI 114
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y YRI++ L++ + AW V LD AM A + L+G HDF++FR + CQA S
Sbjct: 115 KRHYRYRIVNTRANLAL-DAGHAWRVPRRLDADAMHAAAQRLLGKHDFTTFRDTECQARS 173
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P +TLD+L V + R ++
Sbjct: 174 PEKTLDQLDVL----------------------------------------RDGREIIIL 193
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+ QVR +VG L VG G T D+ L A+ A +AP GL L V Y
Sbjct: 194 TSARSFLHSQVRSMVGSLMWVGEGRWTADDLSAALAARNRAACGIVAPPDGLYLMQVDY 252
>gi|227555887|ref|ZP_03985934.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22]
gi|256964165|ref|ZP_05568336.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|257418666|ref|ZP_05595660.1| tRNA pseudouridine synthase [Enterococcus faecalis T11]
gi|307274205|ref|ZP_07555413.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855]
gi|422712957|ref|ZP_16769717.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A]
gi|422718225|ref|ZP_16774896.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B]
gi|227175054|gb|EEI56026.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22]
gi|256954661|gb|EEU71293.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|257160494|gb|EEU90454.1| tRNA pseudouridine synthase [Enterococcus faecalis T11]
gi|306509167|gb|EFM78229.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855]
gi|315573548|gb|EFU85739.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B]
gi|315582104|gb|EFU94295.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A]
Length = 249
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 136/302 (45%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F G QKQ N RTV +E+ + G+ V++ S RTDAGVHA
Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + +P E + R A++ Q+ DI V V V DFHAR+
Sbjct: 61 QVIHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARYHVI 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG
Sbjct: 108 EKTYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVED 166
Query: 236 PIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ E +HV+E F+
Sbjct: 167 KVRTIHEASVHVNETGDELTFT-------------------------------------- 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY +R++VG L +G G L + + I+ AK A P A GL L VK
Sbjct: 189 --FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVK 246
Query: 354 YD 355
Y+
Sbjct: 247 YE 248
>gi|349608795|ref|ZP_08888213.1| tRNA pseudouridine synthase A [Neisseria sp. GT4A_CT1]
gi|348609667|gb|EGY59398.1| tRNA pseudouridine synthase A [Neisseria sp. GT4A_CT1]
Length = 272
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 144/311 (46%), Gaps = 58/311 (18%)
Query: 46 TVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLS 104
+ TE +S K IQR+ + + Y G+ F G QKQ + TV VLE A + G+ + ++
Sbjct: 3 SYTESLSI-KTIQRWALTLSYDGSLFYGWQKQADGLPTVQTVLESALSQIAGETIRTIVA 61
Query: 105 SRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCV 164
RTD GVHA + V H D V+ P + V R VN +L EG + V + V
Sbjct: 62 GRTDTGVHATAQVVHFDTA---------VVRPEQAWV--RGVNAYL-PEG-VAVLFAQQV 108
Query: 165 PSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAW-HVTEELDLRAMQEACKVLVGCHDF 223
FHARF A R Y Y + S P + + W H+ +LD MQ+A +L G HDF
Sbjct: 109 APHFHARFDAYGRRYRYLLESSPVRSPILQGRVGWTHL--KLDPEKMQQAALLLEGEHDF 166
Query: 224 SSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVF 283
SSFRA+ CQA SP++T L+S+ +P +D
Sbjct: 167 SSFRAAECQAKSPVKT-------------LYSAKISGTPQFLKLD--------------- 198
Query: 284 GIRKKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAP 343
+FL+H VR I+G L VG+G L+VS + +++ ++ A P
Sbjct: 199 ------------LHGNAFLHHMVRNIMGALVYVGSGRLSVSGFQDLIEERSRLKAPPTFM 246
Query: 344 ACGLSLGFVKY 354
GL L V Y
Sbjct: 247 PDGLYLTGVDY 257
>gi|257084178|ref|ZP_05578539.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
gi|256992208|gb|EEU79510.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
Length = 249
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 136/302 (45%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F G QKQ N RTV +E+ + G+ V++ S RTDAGVHA
Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + +P E + R A++ Q+ DI V V V DFHAR+
Sbjct: 61 QVIHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARYHVI 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG
Sbjct: 108 EKTYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVED 166
Query: 236 PIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ E +HV+E F+
Sbjct: 167 KVRTIHEASVHVNETGDELTFT-------------------------------------- 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY +R++VG L +G G L + + I+ AK A P A GL L VK
Sbjct: 189 --FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVK 246
Query: 354 YD 355
Y+
Sbjct: 247 YE 248
>gi|118443953|ref|YP_878363.1| tRNA pseudouridine synthase A [Clostridium novyi NT]
gi|118134409|gb|ABK61453.1| tRNA pseudouridine synthase A [Clostridium novyi NT]
Length = 245
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 134/295 (45%), Gaps = 57/295 (19%)
Query: 62 IAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
+ ++Y GTR+ G QK N T+ +E + + + V++ S RTDAGVHA V +
Sbjct: 6 LTIQYDGTRYKGWQKLGNNDNTIQHKIESVLGELLKEEVALIASGRTDAGVHANMQVANF 65
Query: 121 DVE-RISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTY 179
+ RIS + + L + DI+V V +FH+R+ +E+ Y
Sbjct: 66 KTDSRISNDEISKYLYKYLPQ--------------DIVVKSVNEASENFHSRYNVKEKVY 111
Query: 180 FYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRT 239
YRI E VF + ++HV E+LDL+ M+EA K+ +G HDF SF
Sbjct: 112 TYRI-HNSEVHDVFTRKYSYHVREKLDLKKMKEASKLFIGEHDFKSF------------- 157
Query: 240 LDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARAR 299
TAL S ++SI RKK E++
Sbjct: 158 -----------TALKSKKKSTVKTINSI----------------TFRKKEDDIEIVFSGN 190
Query: 300 SFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY +R++VG L VG ++++ DV+ ++ K + A APA GL+L VKY
Sbjct: 191 GFLYKMIRILVGTLVEVGLNKISIDDVKDVMDKKDRSIAPETAPAHGLTLTEVKY 245
>gi|377576601|ref|ZP_09805585.1| tRNA pseudouridine synthase A [Escherichia hermannii NBRC 105704]
gi|377542633|dbj|GAB50750.1| tRNA pseudouridine synthase A [Escherichia hermannii NBRC 105704]
Length = 270
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 137/299 (45%), Gaps = 56/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+++ + +EY G+++ G Q+Q R+V LE+A K PV++ + RTDAGVHA
Sbjct: 9 LRKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSKVANAPVNVFCAGRTDAGVHATGQ 68
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H + + + K + VN L GDI V V+ VP DFHARF A
Sbjct: 69 VVHFETQAVRKDAAWTL-----------GVNANL--PGDIAVRWVKDVPDDFHARFSATA 115
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y I + +V ++ H + LD M A + L+G +DF+SFRA CQ+ +P
Sbjct: 116 RRYRYVIYNHRLRPAVLQQGVT-HYHQPLDADRMHRAAQCLIGENDFTSFRAVQCQSRTP 174
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI- 295
R L ++V+ FG +Y V+
Sbjct: 175 WRNLMHINVAR-----------------------------------FG------AYVVVD 193
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+A +F++H VR IVG L VG G S + +L AK T A+ A A GL L V Y
Sbjct: 194 IKANAFVHHMVRNIVGSLMEVGCGNQPESWINDLLAAKDRTLAAATAKAEGLYLVSVDY 252
>gi|420265949|ref|ZP_14768461.1| tRNA pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394426812|gb|EJE99604.1| tRNA pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 250
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 137/303 (45%), Gaps = 58/303 (19%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF--IGQPVSISLSSRTDAGVHAASNVC 118
+I + Y GT F+G Q Q N RTV VLE+A +K + V I S RTDAGVHA +
Sbjct: 1 MITLAYDGTNFAGFQSQPNQRTVQDVLEKAVNKMSTAKEFVHIFGSGRTDAGVHAFGQIV 60
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D+E +P + +N L D+ V D + V +FHARF A +
Sbjct: 61 HFDLE--------NDIPAQG---IVNGLNSMLPL--DMQVVDAKIVSKEFHARFTAHGKR 107
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YR+ G + F++ H L++ ++EA ++G HD+SSF ASG Q S +R
Sbjct: 108 YMYRVSRG-RFVDPFKRFYTGHYKYPLNIELIKEAIPDVIGTHDYSSFVASGSQTKSHVR 166
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR- 297
T+ D+ V +++N+ E+I
Sbjct: 167 TI------------------YDATVRENLENN----------------------EIIFEF 186
Query: 298 -ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
FLY+QVR++V L +G G+ V D R+ + K APA GL L V YD+
Sbjct: 187 YGNGFLYNQVRIMVAALLEIGNGKRPVHDFLRLYEVKDRNECRATAPASGLYLKKVYYDI 246
Query: 357 PED 359
+
Sbjct: 247 ENN 249
>gi|262369979|ref|ZP_06063306.1| tRNA-pseudouridine synthase I [Acinetobacter johnsonii SH046]
gi|262315018|gb|EEY96058.1| tRNA-pseudouridine synthase I [Acinetobacter johnsonii SH046]
Length = 265
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 134/306 (43%), Gaps = 65/306 (21%)
Query: 57 IQRYLIAVEYIGTRFSGSQ-KQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+QR+ I +E+ GT + G Q +Q +V +E+ K +P+S+ + RTDAGVHA +
Sbjct: 1 MQRFAIGIEFCGTHYRGWQTQQTGVISVQETIEKVLSKIANEPISLHGAGRTDAGVHATN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG----DIMVTDVRCVPSDFHAR 171
V H D SS +R + S DI + ++ + DFHAR
Sbjct: 61 MVAHFD-----------------SSALRSERGWLMGSNSQLPKDISIQWIKAMDQDFHAR 103
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
F+AQ R Y Y + + P+ ++ K H LD+ M +A + G H+F SFRA+ C
Sbjct: 104 FKAQARRYRYVVYNHPQRPALMHKQVT-HAYYALDVAKMMQAAQKFEGTHNFESFRAAAC 162
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
Q+N P+R HVS + Q P L V I
Sbjct: 163 QSNQPVR-----HVSHC-------RLIQHGPYL-----------------VLDI------ 187
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
+A FL+H VR I+G L +G G V +E I A+ AA AP GL F
Sbjct: 188 -----QADGFLHHMVRNIMGCLLEIGQGMYEVEHIEAIFAAEDRKAAGITAPPDGLY--F 240
Query: 352 VKYDLP 357
+ D P
Sbjct: 241 IHADYP 246
>gi|422299547|ref|ZP_16387109.1| tRNA pseudouridine synthase A [Pseudomonas avellanae BPIC 631]
gi|407988527|gb|EKG31045.1| tRNA pseudouridine synthase A [Pseudomonas avellanae BPIC 631]
Length = 284
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 133/310 (42%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVDVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + K + PHD SV + R +P+ FHARF+
Sbjct: 78 VHFDTQAERSLKAWVMGANINLPHDVSV-----------------SWARVMPATFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGMHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ L L V+ +H
Sbjct: 180 KSPIKQLHHLRVT-----------------------------------------RHGKMI 198
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +G GE V +L+++ A GL L V
Sbjct: 199 VIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYLVQV 258
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 259 EYRDEFPLPE 268
>gi|109897925|ref|YP_661180.1| tRNA pseudouridine synthase A [Pseudoalteromonas atlantica T6c]
gi|123064742|sp|Q15VG2.1|TRUA_PSEA6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|109700206|gb|ABG40126.1| tRNA pseudouridine synthase A [Pseudoalteromonas atlantica T6c]
Length = 263
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 127/297 (42%), Gaps = 56/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + VEY G RF G Q+Q +V LEEA + +P+ + + RTDAGVHA V
Sbjct: 2 RIALGVEYDGARFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H + + ++P +N +L I V V+ VP DFHARF A R
Sbjct: 62 HFET---TSQRPDRAWT--------LGINTYLPDT--ISVRWVKAVPEDFHARFSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + + H+ +LD M EA + LVG HDFSSFRA CQA + R
Sbjct: 109 YRYIIYNNTLRSGILANGVT-HIYGDLDHELMHEAAQKLVGKHDFSSFRAVNCQAKTATR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-AR 297
T+ + V K+ Y VI +
Sbjct: 168 TMSHIRV-----------------------------------------KRMGDYIVIDVQ 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A +FL+H VR I G L A+G E V V+ +L+ K T A A GL L V Y
Sbjct: 187 ANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYLVHVTY 243
>gi|407938191|ref|YP_006853832.1| tRNA pseudouridine synthase A [Acidovorax sp. KKS102]
gi|407895985|gb|AFU45194.1| tRNA pseudouridine synthase A [Acidovorax sp. KKS102]
Length = 273
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 132/299 (44%), Gaps = 42/299 (14%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R + V Y G ++G Q QL+ TV LE A +F PVS + RTDAGVH
Sbjct: 1 MTRVALGVSYNGQTYNGWQSQLSGNTVQDKLEAALGRFATHPVSTLCAGRTDAGVHGLMQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D +++ P S V R N FL DI V + VP FHAR A
Sbjct: 61 VVHFDTP-LNR--------PAASWV--RGTNTFLPP--DIAVQWAQAVPEQFHARASAVA 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y +L P SV W V LD AM++A L+G HDF+SFRAS CQA +P
Sbjct: 108 RRYAYVLLQSPVRPSVDAGRVGW-VFHPLDHGAMRQAADYLIGEHDFTSFRASACQAKTP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL + + ++A + G + +E
Sbjct: 167 VKTLHRIDIVRRGASAPHPEL--------------------------GWSPCYWRFEF-- 198
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A +FL+H +R I+G L A+G G + +L A++ A+P GL YD
Sbjct: 199 EANAFLHHMIRNIMGCLIAIGQGTQPPEWMAEVLAARSRKVAAPTFSPDGLYFQGPVYD 257
>gi|317131990|ref|YP_004091304.1| tRNA pseudouridine synthase A [Ethanoligenens harbinense YUAN-3]
gi|315469969|gb|ADU26573.1| tRNA pseudouridine synthase A [Ethanoligenens harbinense YUAN-3]
Length = 252
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 138/301 (45%), Gaps = 58/301 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ L+ + + G + G Q Q N TV VL+ A + ++ SRTDAGVHA +
Sbjct: 1 MRNILLLLRFDGAAYHGWQVQKNGVTVQEVLQNALETVLRHRPPVTGCSRTDAGVHALAY 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
C+ E +P + + RA+N L DI V R VP DFHAR+ A E
Sbjct: 61 ACNFRTE--------HTIPCQN---LVRALNACLPD--DIAVFACREVPPDFHARYSAHE 107
Query: 177 RTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ Y YRIL+ P +P F + RA HV LD M +A + +G HDF+ FRA+G
Sbjct: 108 KEYVYRILNAPARDP---FWRGRALHVPYPLDEAVMDKAARGFLGTHDFAGFRAAGSD-- 162
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
V + V T S + +D ++ +F +
Sbjct: 163 ----------VKDTVRTVFHSGVQRDGDLV-----------------LFRV--------- 186
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RA FLY+ VR++VG L +L +D+ ++ ++ TAA P APA GL L V Y
Sbjct: 187 --RADGFLYNMVRIMVGTLLYTAQDKLQPADILAVIDSRDRTAAGPTAPAHGLYLNRVFY 244
Query: 355 D 355
D
Sbjct: 245 D 245
>gi|229546930|ref|ZP_04435655.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322]
gi|229550518|ref|ZP_04439243.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200]
gi|255971742|ref|ZP_05422328.1| tRNA pseudouridine synthase [Enterococcus faecalis T1]
gi|255974742|ref|ZP_05425328.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|256618347|ref|ZP_05475193.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|257081530|ref|ZP_05575891.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|257417608|ref|ZP_05594602.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG]
gi|257421532|ref|ZP_05598522.1| tRNA pseudouridine synthase [Enterococcus faecalis X98]
gi|307276430|ref|ZP_07557553.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134]
gi|307278640|ref|ZP_07559710.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|312952641|ref|ZP_07771505.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102]
gi|384512149|ref|YP_005707242.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF]
gi|384517322|ref|YP_005704627.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62]
gi|422691684|ref|ZP_16749713.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031]
gi|422695411|ref|ZP_16753397.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244]
gi|422700076|ref|ZP_16757932.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
gi|422706350|ref|ZP_16764051.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043]
gi|422723143|ref|ZP_16779681.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|422726431|ref|ZP_16782878.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312]
gi|422735098|ref|ZP_16791378.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|424671713|ref|ZP_18108704.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
gi|430362577|ref|ZP_19427121.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1X]
gi|430368678|ref|ZP_19428359.1| tRNA-pseudouridine synthase I [Enterococcus faecalis M7]
gi|229304375|gb|EEN70371.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200]
gi|229307858|gb|EEN73845.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322]
gi|255962760|gb|EET95236.1| tRNA pseudouridine synthase [Enterococcus faecalis T1]
gi|255967614|gb|EET98236.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|256597874|gb|EEU17050.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|256989560|gb|EEU76862.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|257159436|gb|EEU89396.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG]
gi|257163356|gb|EEU93316.1| tRNA pseudouridine synthase [Enterococcus faecalis X98]
gi|306504700|gb|EFM73900.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|306506910|gb|EFM76057.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134]
gi|310629429|gb|EFQ12712.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102]
gi|315026801|gb|EFT38733.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|315147137|gb|EFT91153.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244]
gi|315153575|gb|EFT97591.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031]
gi|315156245|gb|EFU00262.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043]
gi|315158610|gb|EFU02627.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312]
gi|315168134|gb|EFU12151.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|315171426|gb|EFU15443.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
gi|323479455|gb|ADX78894.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62]
gi|327534038|gb|AEA92872.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF]
gi|402357981|gb|EJU92669.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
gi|429512091|gb|ELA01710.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1X]
gi|429516122|gb|ELA05617.1| tRNA-pseudouridine synthase I [Enterococcus faecalis M7]
Length = 249
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 135/302 (44%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F G QKQ N RTV +E+ + G V++ S RTDAGVHA
Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + +P E + R A++ Q+ DI V V V DFHAR+
Sbjct: 61 QVIHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARYHVI 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG
Sbjct: 108 EKTYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVED 166
Query: 236 PIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ E +HV+E F+
Sbjct: 167 KVRTIHEASVHVNETGDELTFT-------------------------------------- 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY +R++VG L +G G L + + I+ AK A P A GL L VK
Sbjct: 189 --FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVK 246
Query: 354 YD 355
Y+
Sbjct: 247 YE 248
>gi|196034640|ref|ZP_03102048.1| tRNA pseudouridine synthase A [Bacillus cereus W]
gi|196045298|ref|ZP_03112530.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108]
gi|218901631|ref|YP_002449465.1| tRNA pseudouridine synthase A [Bacillus cereus AH820]
gi|300119051|ref|ZP_07056762.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1]
gi|301052143|ref|YP_003790354.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis
str. CI]
gi|423553655|ref|ZP_17529982.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ISP3191]
gi|195992683|gb|EDX56643.1| tRNA pseudouridine synthase A [Bacillus cereus W]
gi|196023882|gb|EDX62557.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108]
gi|218540034|gb|ACK92432.1| tRNA pseudouridine synthase A [Bacillus cereus AH820]
gi|298723667|gb|EFI64398.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1]
gi|300374312|gb|ADK03216.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis
str. CI]
gi|401183428|gb|EJQ90544.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ISP3191]
Length = 245
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 143/299 (47%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y + ++Y G RF G Q+ N T+ G +E + IG+ + I SRTDAGVHA +
Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + + E L H V++ +N +L + DI +T+V V FHAR+ ++
Sbjct: 61 QVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVHDRFHARYNSK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F + + S
Sbjct: 108 AKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R E++ EV+ A F I
Sbjct: 167 MVR---EVYSLEVMEEAGFVQIR------------------------------------- 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL++ VR IVG L VG G+L + +IL+AK + +A A GL L V++
Sbjct: 187 VSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGLYLENVEF 245
>gi|254877028|ref|ZP_05249738.1| tRNA pseudouridine synthetase A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843049|gb|EET21463.1| tRNA pseudouridine synthetase A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 258
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 139/300 (46%), Gaps = 58/300 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + ++ LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VC--HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
V H D +R + S R N L DI + D++ V +DF++RF A
Sbjct: 61 VVNFHSDADR-------------NLSSWMRGTNALLPQ--DIKILDIKVVDNDFNSRFTA 105
Query: 175 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ RTY Y I + +F + W +L++ M +ACK L+G DF+SFR+S CQ+N
Sbjct: 106 KNRTYNYIIYNSLISSPIFAEHCLWE-NRQLNIDKMNQACKYLLGEQDFTSFRSSQCQSN 164
Query: 235 SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294
+P R + + I Q S ++ +EV
Sbjct: 165 TPFRNIQKAEF-----------IKQGSFIV---------------------------FEV 186
Query: 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+ A FL+H +R +G L VG + ++ +L+AK T A+ A A GL V+Y
Sbjct: 187 VGNA--FLHHMIRNFIGSLLKVGLEFESPEWIKLVLEAKDRTKAAETAKAHGLYFVGVEY 244
>gi|89256403|ref|YP_513765.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica LVS]
gi|115314847|ref|YP_763570.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica OSU18]
gi|254367741|ref|ZP_04983762.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica 257]
gi|422938792|ref|YP_007011939.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FSC200]
gi|122325138|sp|Q0BLV1.1|TRUA_FRATO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|122999741|sp|Q2A3D7.1|TRUA_FRATH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|89144234|emb|CAJ79507.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica LVS]
gi|115129746|gb|ABI82933.1| tRNA-pseudouridine synthase I [Francisella tularensis subsp.
holarctica OSU18]
gi|134253552|gb|EBA52646.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica 257]
gi|407293943|gb|AFT92849.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FSC200]
Length = 258
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 142/302 (47%), Gaps = 56/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + +V LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ + + +P S +R VN L DI + V+ V ++F++RF A
Sbjct: 61 IVNF---YSNAYRP--------LSAWQRGVNALLPQ--DIKILAVQQVDNNFNSRFTAIN 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y I + +F + W ELD+ M +AC+ L+G DFSSFR+S CQ+N+P
Sbjct: 108 RTYNYIIYNSATSSPIFAEHCLWE-NRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
R + + I Q S ++ +EV+
Sbjct: 167 FRNIQKAEF-----------IKQGSFIV---------------------------FEVVG 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
A FL+H +R +VG L VG G + ++ +L+AK T A+ A A GL FV +
Sbjct: 189 NA--FLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY--FVGVEY 244
Query: 357 PE 358
PE
Sbjct: 245 PE 246
>gi|156502494|ref|YP_001428559.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|290953826|ref|ZP_06558447.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica URFT1]
gi|423050756|ref|YP_007009190.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica F92]
gi|166228698|sp|A7NCA0.1|TRUA_FRATF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|156253097|gb|ABU61603.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|421951478|gb|AFX70727.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica F92]
Length = 258
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 142/302 (47%), Gaps = 56/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + +V LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ + + +P S +R VN L DI + V+ V ++F++RF A
Sbjct: 61 IVNF---YSNAYRP--------LSAWQRGVNALLPQ--DIKILAVQQVNNNFNSRFTAIN 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y I + +F + W ELD+ M +AC+ L+G DFSSFR+S CQ+N+P
Sbjct: 108 RTYNYIIYNSATSSPIFAEHCLWE-NRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
R + + I Q S ++ +EV+
Sbjct: 167 FRNIQKAEF-----------IKQGSFIV---------------------------FEVVG 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
A FL+H +R +VG L VG G + ++ +L+AK T A+ A A GL FV +
Sbjct: 189 NA--FLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY--FVGVEY 244
Query: 357 PE 358
PE
Sbjct: 245 PE 246
>gi|170720741|ref|YP_001748429.1| tRNA pseudouridine synthase A [Pseudomonas putida W619]
gi|169758744|gb|ACA72060.1| tRNA pseudouridine synthase A [Pseudomonas putida W619]
Length = 284
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 139/317 (43%), Gaps = 69/317 (21%)
Query: 52 STNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAG 110
S + R + VEY G+R+ G Q+Q + +V LE+A K +P+++ + RTDAG
Sbjct: 11 SAAEGFTRIALGVEYKGSRYRGWQRQASGVPSVQQALEQALSKVANEPITVVCAGRTDAG 70
Query: 111 VHAASNVCHVDVERISKRKPGEVLP-----PHDSSVVRRAVNHFLQSEGDIMVTDVRCVP 165
VH + H D R ++ + L PHD SVV R +P
Sbjct: 71 VHGCGQIVHFDT-RANRDERAWTLGTNFNLPHDISVVWS-----------------RPMP 112
Query: 166 SDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSS 225
+DFHARF+A R Y Y I + P + ++ W+ LD+ M +A + L+G HDFS+
Sbjct: 113 ADFHARFKATARRYRYVIYNDPIRPAHLAEEVTWN-HRPLDVERMADAAQFLLGTHDFSA 171
Query: 226 FRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGI 285
FRAS CQA SPI+ + L V+
Sbjct: 172 FRASQCQAKSPIKHIHHLRVT--------------------------------------- 192
Query: 286 RKKHRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPA 344
+H V+ RA +FL+H VR I GVL +G GE +L+ + A
Sbjct: 193 --RHGQMIVLDVRATAFLHHMVRNIAGVLMTIGAGERPAGWAREVLEGRNRREGGVTAHP 250
Query: 345 CGLSLGFVKYDLPEDDQ 361
GL L V+ + PE+ Q
Sbjct: 251 YGLYL--VQVEYPEEFQ 265
>gi|114775677|ref|ZP_01451245.1| tRNA pseudouridine synthase A [Mariprofundus ferrooxydans PV-1]
gi|114553788|gb|EAU56169.1| tRNA pseudouridine synthase A [Mariprofundus ferrooxydans PV-1]
Length = 267
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 135/306 (44%), Gaps = 53/306 (17%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAG 110
MST QR +A+E+ G F G Q+Q N +V L++A G+P+++ + RTDAG
Sbjct: 3 MSTGMDHQRIALALEFDGRPFHGWQQQENATSVQACLQDALQAVEGEPLTVVAAGRTDAG 62
Query: 111 VHAASNVCHVDVERI-SKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
VHA + + H DV +R P L N L E I V VR V +DFH
Sbjct: 63 VHAEALLVHADVSAARWQRSPRAYL---------HGCNSHLPDE--IRVVGVRAVAADFH 111
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
ARF + R+Y Y+I + S ++ R W + L++ AMQ A +G HDFS+ RA+
Sbjct: 112 ARFACRGRSYRYQIWN-RNTASALQRWRHWWMPRSLNIEAMQGAAVHCLGRHDFSALRAA 170
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
GCQA + + L + ++ H
Sbjct: 171 GCQAAHAEKHIRSLEI---------------------------------------VQHGH 191
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
+ A +FLYH VR +VG L VG G+ + D +L ++ + APA GL
Sbjct: 192 -CIHIHVSADAFLYHMVRNLVGNLVEVGAGKRSPDDFAALLASRDRQLGAATAPAHGLYF 250
Query: 350 GFVKYD 355
YD
Sbjct: 251 TDAWYD 256
>gi|440739161|ref|ZP_20918682.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens BRIP34879]
gi|440380151|gb|ELQ16722.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens BRIP34879]
Length = 274
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 133/309 (43%), Gaps = 67/309 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q TV LE A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDV--ERISKR--KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D ER K + PHD SV T + +P+ FHARF+
Sbjct: 68 VHFDTQAERTMKAWVMGANINLPHDVSV-----------------TWAKVMPAHFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M EA + LVG HDFS+FRA CQA
Sbjct: 111 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAEAAQHLVGVHDFSAFRAGQCQA 169
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ + L V+ +G V I
Sbjct: 170 KSPIKEVHHLRVTR-----------------------------HGKMIVLDI-------- 192
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
RA +FL+H VR I GVL +GTGE V +L+++ A GL L V+
Sbjct: 193 ---RAGAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRVRRTGGVTAHPFGLYLVGVE 249
Query: 354 Y----DLPE 358
Y LPE
Sbjct: 250 YRDEFQLPE 258
>gi|170017912|ref|YP_001728831.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20]
gi|414596266|ref|ZP_11445842.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE E16]
gi|421876113|ref|ZP_16307673.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C10]
gi|421878492|ref|ZP_16309972.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C11]
gi|238688937|sp|B1MVY3.1|TRUA_LEUCK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|169804769|gb|ACA83387.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20]
gi|372558148|emb|CCF23793.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C10]
gi|390447619|emb|CCF26092.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C11]
gi|390483199|emb|CCF27903.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE E16]
Length = 260
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 135/306 (44%), Gaps = 60/306 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-----RTVVGVLEEAFHKFIGQPVS---ISLSSRTD 108
+ RY V Y G+ F G Q Q RTV G L +A ++ QPV+ + +SRTD
Sbjct: 1 MTRYKAIVAYDGSNFFGFQVQTKSGVEVQRTVQGELNKAVNQMAKQPVTPIKVVGASRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
GVHA V H D+ P ++ P V + +N L DI++ V V DF
Sbjct: 61 TGVHAFGQVVHFDL-------PFDINPVG----VSKGLNTLLPR--DILIKAVTKVSDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF + YFYR+ S F++ H LD +QEA L+G HDF+SF A
Sbjct: 108 HARFSTHAKRYFYRV-STTAFTDPFKRHYTGHFHWHLDTSRIQEALPDLIGEHDFASFAA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
SG Q S +RT+ + E P+ VF
Sbjct: 167 SGNQTASTVRTITSAQLIE---------------------------KPDEQELVF----- 194
Query: 289 HRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLS 348
+ +FLY+Q+R++VGVL +G G + D++R++ K A APA GL
Sbjct: 195 ------VFEGNAFLYNQIRIMVGVLLEIGNGRREIHDIQRLIAVKDREQARFTAPASGLY 248
Query: 349 LGFVKY 354
L + Y
Sbjct: 249 LDEIDY 254
>gi|56708110|ref|YP_170006.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670581|ref|YP_667138.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis FSC198]
gi|254370594|ref|ZP_04986599.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis FSC033]
gi|254874909|ref|ZP_05247619.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717351|ref|YP_005305687.1| tRNA pseudouridine synthase A( ) [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725955|ref|YP_005318141.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis TI0902]
gi|385794775|ref|YP_005831181.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis NE061598]
gi|421755656|ref|ZP_16192598.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 80700075]
gi|62901197|sp|Q5NG36.1|TRUA_FRATT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|123169371|sp|Q14HI8.1|TRUA_FRAT1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56604602|emb|CAG45654.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320914|emb|CAL09037.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis FSC198]
gi|151568837|gb|EDN34491.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis FSC033]
gi|254840908|gb|EET19344.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159310|gb|ADA78701.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis NE061598]
gi|377827404|gb|AFB80652.1| tRNA pseudouridine synthase A( ) [Francisella tularensis subsp.
tularensis TI0902]
gi|377829028|gb|AFB79107.1| tRNA pseudouridine synthase A( ) [Francisella tularensis subsp.
tularensis TIGB03]
gi|409087814|gb|EKM87902.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 80700075]
Length = 258
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 142/302 (47%), Gaps = 56/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + +V LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ V+ + R S +R VN L DI + V+ V ++F++RF A
Sbjct: 61 I--VNFYSNADRPL---------SAWQRGVNALLPQ--DIKILAVQQVDNNFNSRFTAIN 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y I + +F + W ELD+ M +AC+ L+G DFSSFR+S CQ+N+P
Sbjct: 108 RTYNYIIYNSATSSPIFAEHCLWE-NRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
R + + I Q S ++ +EV+
Sbjct: 167 FRNIQKAEF-----------IKQGSFIV---------------------------FEVVG 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
A FL+H +R +VG L VG G + ++ +L+AK T A+ A A GL FV +
Sbjct: 189 NA--FLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY--FVGVEY 244
Query: 357 PE 358
PE
Sbjct: 245 PE 246
>gi|270291103|ref|ZP_06197326.1| tRNA pseudouridine synthase A [Pediococcus acidilactici 7_4]
gi|304385383|ref|ZP_07367728.1| tRNA pseudouridine synthase A [Pediococcus acidilactici DSM 20284]
gi|418069660|ref|ZP_12706937.1| pseudouridylate synthase [Pediococcus acidilactici MA18/5M]
gi|270280499|gb|EFA26334.1| tRNA pseudouridine synthase A [Pediococcus acidilactici 7_4]
gi|304328590|gb|EFL95811.1| tRNA pseudouridine synthase A [Pediococcus acidilactici DSM 20284]
gi|357536191|gb|EHJ20222.1| pseudouridylate synthase [Pediococcus acidilactici MA18/5M]
Length = 248
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 132/299 (44%), Gaps = 55/299 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHAAS 115
RY I + Y GT F+G Q Q N RTV GVL+ A +K P + I S RTDAGVHA
Sbjct: 2 RYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAVNKIAKNPQPEIPIFGSGRTDAGVHAFG 61
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ P E+ ++ + A+N L D V V V DFHARF
Sbjct: 62 QVVHFDL-------PIEMT----ANNMLHALNSILPL--DTQVKKVEIVDEDFHARFTTH 108
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ G E + F+++ H + + +Q+A K L G HDFSSF ASG A +
Sbjct: 109 GKRYQYRMALG-EFVDPFKRNYTGHWKFPISIELIQQAIKDLEGTHDFSSFVASGSTAKN 167
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E + Q+ + N
Sbjct: 168 HVRTIYE--------AKAWKDEAQNEIIFEFYGN-------------------------- 193
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR++V VL +G+ V D+ R+L K A APA GL L V Y
Sbjct: 194 ----GFLYNMVRIMVAVLVEIGSKRRPVDDIPRLLAVKDRNQARGTAPASGLYLKEVDY 248
>gi|240015157|ref|ZP_04722070.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI18]
gi|240122134|ref|ZP_04735096.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID24-1]
Length = 265
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 139/307 (45%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ TV LE A + G+ V+ +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHAA+ V H D P + V R VN L EG I V R V FH
Sbjct: 60 GVHAAAQVVHFDTTAAR---------PQQAWV--RGVNAHL-PEG-IAVLHARQVAPGFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M A +LVG DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESAPVRSPLL---KNRAGWTHLKLDIEPMCRAASLLVGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+GCQA SP++T+ +++ S L +D
Sbjct: 164 AAGCQAKSPVKTIYRADLTQ-------------SAGLIRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|52144819|ref|YP_082010.1| tRNA pseudouridine synthase A [Bacillus cereus E33L]
gi|62901422|sp|Q63GF1.1|TRUA2_BACCZ RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|51978288|gb|AAU19838.1| tRNA-pseudouridylate synthase I (tRNA pseudouridine synthase A)
[Bacillus cereus E33L]
Length = 245
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 143/299 (47%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y + ++Y G RF G Q+ N T+ G +E + IG+ + I SRTDAGVHA +
Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + + E L H V++ +N +L + DI +T+V V FHAR+ ++
Sbjct: 61 QVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVHDRFHARYNSK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F + + S
Sbjct: 108 AKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R E++ EV+ A F I
Sbjct: 167 MVR---EVYSLEVMEEAGFVQIR------------------------------------- 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL++ VR IVG L VG G+L + +IL+AK + +A A GL L V++
Sbjct: 187 VSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGLYLENVEF 245
>gi|227520026|ref|ZP_03950075.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104]
gi|424678887|ref|ZP_18115725.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV103]
gi|424679734|ref|ZP_18116548.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV116]
gi|424684141|ref|ZP_18120867.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV129]
gi|424688418|ref|ZP_18125024.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV25]
gi|424691534|ref|ZP_18128057.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV31]
gi|424695104|ref|ZP_18131488.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV37]
gi|424696506|ref|ZP_18132851.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV41]
gi|424701862|ref|ZP_18138028.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV62]
gi|424704952|ref|ZP_18141038.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV63]
gi|424706343|ref|ZP_18142350.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV65]
gi|424719034|ref|ZP_18148262.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV68]
gi|424719954|ref|ZP_18149080.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV72]
gi|424722761|ref|ZP_18151786.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV73]
gi|424733438|ref|ZP_18161998.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV81]
gi|424735242|ref|ZP_18163712.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV85]
gi|424754586|ref|ZP_18182495.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV93]
gi|424757475|ref|ZP_18185211.1| tRNA pseudouridine synthase A [Enterococcus faecalis R508]
gi|227072574|gb|EEI10537.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104]
gi|402350590|gb|EJU85492.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV103]
gi|402355689|gb|EJU90451.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV116]
gi|402360862|gb|EJU95456.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV25]
gi|402362089|gb|EJU96629.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV31]
gi|402362698|gb|EJU97216.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV129]
gi|402368951|gb|EJV03250.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV37]
gi|402370826|gb|EJV05015.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV62]
gi|402377548|gb|EJV11446.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV41]
gi|402380110|gb|EJV13879.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV68]
gi|402380562|gb|EJV14312.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV63]
gi|402388151|gb|EJV21600.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV65]
gi|402391806|gb|EJV25086.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV81]
gi|402394917|gb|EJV28064.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV72]
gi|402400943|gb|EJV33748.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV73]
gi|402403035|gb|EJV35727.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV93]
gi|402404132|gb|EJV36763.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV85]
gi|402406802|gb|EJV39347.1| tRNA pseudouridine synthase A [Enterococcus faecalis R508]
Length = 249
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 135/300 (45%), Gaps = 57/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F G QKQ N RTV +E+ + G+ V++ S RTDAGVHA V
Sbjct: 3 RYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAIGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + +P E + R A++ Q+ DI V V V DFHAR+ E+
Sbjct: 63 IHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARYHVIEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG +
Sbjct: 110 TYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKV 168
Query: 238 RTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
RT+ E +HV+E F+
Sbjct: 169 RTIHEASVHVNETGDELTFT---------------------------------------- 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
R FLY +R++VG L +G G L + + I+ AK A P A GL L VKY+
Sbjct: 189 FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVKYE 248
>gi|227533991|ref|ZP_03964040.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I)
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|409998256|ref|YP_006752657.1| tRNA pseudouridine synthase A [Lactobacillus casei W56]
gi|227188368|gb|EEI68435.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I)
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|406359268|emb|CCK23538.1| tRNA pseudouridine synthase A [Lactobacillus casei W56]
Length = 254
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 137/304 (45%), Gaps = 55/304 (18%)
Query: 54 NKR--IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAG 110
N+R + Y + + Y GT F+G Q Q RTV GVL++A K GQPV + S RTD+G
Sbjct: 3 NRRDIMTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSG 62
Query: 111 VHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHA 170
VHA V D PG + P +S + +A+N + DI + V +DFHA
Sbjct: 63 VHALGQVISFDY-------PGNI--PAESML--KAMNSLMPL--DIEILKAEIVDADFHA 109
Query: 171 RFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASG 230
R+ A+ + Y YR+ G + F + H +LD++ ++ A K LVG HDF+SF ASG
Sbjct: 110 RYSAKGKRYLYRVARGYYT-NPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASG 168
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
+RT+ E V E PV + I +F
Sbjct: 169 GVIVDKVRTIYEATVRE-------------DPVTNEI--------------IFEF----- 196
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLG 350
FLY+ VR++V +G G V D +R+ K A APA GL L
Sbjct: 197 ------YGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPASGLYLK 250
Query: 351 FVKY 354
V Y
Sbjct: 251 EVYY 254
>gi|254374311|ref|ZP_04989793.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3548]
gi|151572031|gb|EDN37685.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3548]
Length = 258
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 142/302 (47%), Gaps = 56/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + +V LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ V+ + R S +R VN L DI + V+ V ++F++RF A
Sbjct: 61 I--VNFYSNADRPL---------SAWQRGVNALLPK--DIKILAVQQVDNNFNSRFTAIN 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y I + +F + W ELD+ M +AC+ L+G DFSSFR+S CQ+N+P
Sbjct: 108 RTYNYIIYNSATSSPIFAEHCLWE-NRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
R + + I Q S ++ +EV+
Sbjct: 167 FRNIQKAEF-----------IKQGSFIV---------------------------FEVVG 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
A FL+H +R +VG L VG G + ++ +L+AK T A+ A A GL FV +
Sbjct: 189 NA--FLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY--FVGVEY 244
Query: 357 PE 358
PE
Sbjct: 245 PE 246
>gi|386734334|ref|YP_006207515.1| tRNA pseudouridine synthase A 2 [Bacillus anthracis str. H9401]
gi|384384186|gb|AFH81847.1| tRNA pseudouridine synthase A 2 [Bacillus anthracis str. H9401]
Length = 250
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 145/305 (47%), Gaps = 56/305 (18%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M NK + Y + ++Y G RF G Q+ N T+ G +E + +G+ I SRTDA
Sbjct: 1 MKENK-MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDA 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V + + E L H V++ +N +L + DI +T+V V FH
Sbjct: 60 GVHALNQVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVHDRFH 106
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
AR+ ++ +TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F +
Sbjct: 107 ARYNSKAKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNA 165
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
+ S +R E++ EV+ A F I
Sbjct: 166 KSKKKSMVR---EVYSLEVMEEAGFVQIR------------------------------- 191
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FL++ VR IVG L VG G+L + +IL+AK + +A A GL L
Sbjct: 192 ------VSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGLYL 245
Query: 350 GFVKY 354
V++
Sbjct: 246 ENVEF 250
>gi|319945640|ref|ZP_08019892.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641]
gi|417919104|ref|ZP_12562645.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641]
gi|319748239|gb|EFW00481.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641]
gi|342834691|gb|EGU68955.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641]
Length = 248
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 129/300 (43%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F+G Q+Q + R+V +E+ + G PV+I + RTDAGVHA
Sbjct: 1 MTRYKATISYDGTLFAGFQRQPHARSVQEEIEKTLMRLNQGNPVTIHGAGRTDAGVHALG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+ + P D +R A++ Q+ DI V VP DFH+R++
Sbjct: 61 QVIHFDLPQ-----------PRDEEKLRFALD--TQTPEDIDFIRVEQVPDDFHSRYQKH 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY + + G P + + A H LD+ MQ A + L G HDF+ F ASG
Sbjct: 108 SKTYEFIVDYG-RPKNPMMRHYATHYPYPLDVAKMQAAIQKLEGTHDFTGFTASGTSVED 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E + E +H
Sbjct: 167 KVRTITEARLVE--------------------------------------DAEHHRLVFT 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY Q+R +VG L +G G + V ++ IL+ K A P A GL L ++Y+
Sbjct: 189 FSGNGFLYKQIRNMVGTLLKIGNGRMPVDQIDLILEKKDRNLAGPTAAPNGLYLKEIRYE 248
>gi|262374120|ref|ZP_06067397.1| tRNA pseudouridine synthase A [Acinetobacter junii SH205]
gi|262311131|gb|EEY92218.1| tRNA pseudouridine synthase A [Acinetobacter junii SH205]
Length = 265
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 139/310 (44%), Gaps = 65/310 (20%)
Query: 57 IQRYLIAVEYIGTRFSGSQ-KQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+QRY I +E+ GT++ G Q +Q +V +E+ K PV + + RTDAGVHA +
Sbjct: 1 MQRYAIGIEFCGTQYRGWQTQQAGVVSVQETIEKVLSKIADHPVILHAAGRTDAGVHATN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D I + G ++ + Q DI + ++C+ +FHARF+A
Sbjct: 61 MVAHFDTTAIRPER-GWLMGANS------------QLPKDISIQWIKCMDENFHARFKAM 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y Y + + P ++ K H+ +ELD++ M +A G H+F SFRA+ CQ+N
Sbjct: 108 ARRYRYLVYNAPTRPALLHKQVT-HLYQELDVQKMIKAAAKFEGTHNFESFRAAACQSNQ 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+R + + E H Y V+
Sbjct: 167 PVRHVKHCRLFE-----------------------------------------HGRYLVL 185
Query: 296 -ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV-- 352
+A FL+H VR I+G L +G G + ++ + A+ AA APA GL F+
Sbjct: 186 DIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRRAAGITAPADGLY--FIQS 243
Query: 353 ----KYDLPE 358
++DLP+
Sbjct: 244 YYPDQFDLPQ 253
>gi|254369374|ref|ZP_04985386.1| hypothetical protein FTAG_00346 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122324|gb|EDO66464.1| hypothetical protein FTAG_00346 [Francisella tularensis subsp.
holarctica FSC022]
Length = 258
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 142/302 (47%), Gaps = 56/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + +V LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ + + +P S +R VN L DI + V+ V ++F++RF A
Sbjct: 61 IVNF---YSNAYRP--------LSAWQRGVNALLPQ--DIKILAVQQVDNNFNSRFTAIN 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
RTY Y I + +F + W ELD+ M +AC+ L+G DFSSFR+S CQ+N+P
Sbjct: 108 RTYNYIIYNSATSSPIFAEHCLWE-NRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTP 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
R + + I Q S ++ +EV+
Sbjct: 167 FRNIQKAEF-----------IKQGSFIV---------------------------FEVVG 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
A FL+H +R +VG L VG G + ++ +L+AK T A+ A A GL FV +
Sbjct: 189 NA--FLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY--FVGVEY 244
Query: 357 PE 358
PE
Sbjct: 245 PE 246
>gi|261211961|ref|ZP_05926247.1| tRNA pseudouridine synthase A [Vibrio sp. RC341]
gi|260838569|gb|EEX65220.1| tRNA pseudouridine synthase A [Vibrio sp. RC341]
Length = 264
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 130/305 (42%), Gaps = 60/305 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT + G Q+Q ++V LE+A K PV + + RTDAGVH V
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + +V + DI V VP DFHARF A R
Sbjct: 62 HFDTTA-------------ERQMVAWTMGANANLPKDIAVRWASSVPDDFHARFSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + + + H ELD+ MQ+A + L+G +DF+SFRA CQ+ SP R
Sbjct: 109 YRYVIYNHVYRPGILNSGVS-HYHCELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-AR 297
L L+V+ +H Y VI +
Sbjct: 168 NLMHLNVT-----------------------------------------RHGRYVVIDIK 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY--- 354
A +F++H VR I G L AVG GE ++ +L+ K T A+ A A GL L V Y
Sbjct: 187 ANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYLVEVDYPAH 246
Query: 355 -DLPE 358
LPE
Sbjct: 247 FGLPE 251
>gi|15802865|ref|NP_288892.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EDL933]
gi|15832456|ref|NP_311229.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. Sakai]
gi|26248707|ref|NP_754747.1| tRNA pseudouridine synthase A [Escherichia coli CFT073]
gi|82777729|ref|YP_404078.1| tRNA pseudouridine synthase A [Shigella dysenteriae Sd197]
gi|168748172|ref|ZP_02773194.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|168755075|ref|ZP_02780082.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|168761239|ref|ZP_02786246.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|168767949|ref|ZP_02792956.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|168772951|ref|ZP_02797958.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|168780178|ref|ZP_02805185.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|168787230|ref|ZP_02812237.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC869]
gi|168798493|ref|ZP_02823500.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC508]
gi|170680088|ref|YP_001744518.1| tRNA pseudouridine synthase A [Escherichia coli SMS-3-5]
gi|195935697|ref|ZP_03081079.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4024]
gi|208807895|ref|ZP_03250232.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208811862|ref|ZP_03253191.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208821544|ref|ZP_03261864.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209397276|ref|YP_002271727.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|217327172|ref|ZP_03443255.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|218695917|ref|YP_002403584.1| tRNA pseudouridine synthase A [Escherichia coli 55989]
gi|218700794|ref|YP_002408423.1| tRNA pseudouridine synthase A [Escherichia coli IAI39]
gi|218705848|ref|YP_002413367.1| tRNA pseudouridine synthase A [Escherichia coli UMN026]
gi|222157069|ref|YP_002557208.1| tRNA pseudouridine synthase A [Escherichia coli LF82]
gi|227887378|ref|ZP_04005183.1| tRNA pseudouridine synthase A [Escherichia coli 83972]
gi|254794211|ref|YP_003079048.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
gi|261223227|ref|ZP_05937508.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259223|ref|ZP_05951756.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
FRIK966]
gi|291283559|ref|YP_003500377.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. CB9615]
gi|293405784|ref|ZP_06649776.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1412]
gi|293410675|ref|ZP_06654251.1| tRNA pseudouridine synthase A [Escherichia coli B354]
gi|293415611|ref|ZP_06658254.1| tRNA pseudouridine synthase A [Escherichia coli B185]
gi|293446655|ref|ZP_06663077.1| tRNA pseudouridine synthase A [Escherichia coli B088]
gi|298381467|ref|ZP_06991066.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1302]
gi|300822193|ref|ZP_07102335.1| tRNA pseudouridine synthase A [Escherichia coli MS 119-7]
gi|300936897|ref|ZP_07151784.1| tRNA pseudouridine synthase A [Escherichia coli MS 21-1]
gi|300983542|ref|ZP_07176636.1| tRNA pseudouridine synthase A [Escherichia coli MS 45-1]
gi|301024150|ref|ZP_07187860.1| tRNA pseudouridine synthase A [Escherichia coli MS 69-1]
gi|301049077|ref|ZP_07196061.1| tRNA pseudouridine synthase A [Escherichia coli MS 185-1]
gi|301303220|ref|ZP_07209345.1| tRNA pseudouridine synthase A [Escherichia coli MS 124-1]
gi|307311121|ref|ZP_07590765.1| tRNA pseudouridine synthase A [Escherichia coli W]
gi|309784972|ref|ZP_07679605.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1617]
gi|309793201|ref|ZP_07687629.1| tRNA pseudouridine synthase A [Escherichia coli MS 145-7]
gi|331663835|ref|ZP_08364745.1| tRNA pseudouridine synthase A [Escherichia coli TA143]
gi|331669017|ref|ZP_08369865.1| tRNA pseudouridine synthase A [Escherichia coli TA271]
gi|331673820|ref|ZP_08374583.1| tRNA pseudouridine synthase A [Escherichia coli TA280]
gi|331678264|ref|ZP_08378939.1| tRNA pseudouridine synthase A [Escherichia coli H591]
gi|378712247|ref|YP_005277140.1| tRNA pseudouridine synthase A [Escherichia coli KO11FL]
gi|386609694|ref|YP_006125180.1| pseudouridylate synthase I [Escherichia coli W]
gi|386625023|ref|YP_006144751.1| pseudouridylate synthase I [Escherichia coli O7:K1 str. CE10]
gi|386630115|ref|YP_006149835.1| tRNA pseudouridine synthase A [Escherichia coli str. 'clone D i2']
gi|386635035|ref|YP_006154754.1| tRNA pseudouridine synthase A [Escherichia coli str. 'clone D i14']
gi|386639888|ref|YP_006106686.1| tRNA pseudouridine synthase A [Escherichia coli ABU 83972]
gi|386700708|ref|YP_006164545.1| tRNA pseudouridine synthase A [Escherichia coli KO11FL]
gi|386710180|ref|YP_006173901.1| tRNA pseudouridine synthase A [Escherichia coli W]
gi|387608006|ref|YP_006096862.1| tRNA pseudouridine synthase A [Escherichia coli 042]
gi|387617676|ref|YP_006120698.1| tRNA pseudouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|387883533|ref|YP_006313835.1| tRNA pseudouridine synthase A [Escherichia coli Xuzhou21]
gi|407470198|ref|YP_006783359.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407481139|ref|YP_006778288.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|410481686|ref|YP_006769232.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415828941|ref|ZP_11515373.1| tRNA pseudouridine synthase A [Escherichia coli OK1357]
gi|415864050|ref|ZP_11537201.1| tRNA pseudouridine synthase A [Escherichia coli MS 85-1]
gi|416310994|ref|ZP_11656729.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|416318111|ref|ZP_11660821.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|416330662|ref|ZP_11669612.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|416775601|ref|ZP_11874441.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. G5101]
gi|416787278|ref|ZP_11879349.1| tRNA pseudouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|416798917|ref|ZP_11884266.1| tRNA pseudouridine synthase A [Escherichia coli O157:H- str. H
2687]
gi|416809288|ref|ZP_11888951.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str.
3256-97]
gi|416819924|ref|ZP_11893511.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|416830793|ref|ZP_11898798.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
gi|417122644|ref|ZP_11971902.1| tRNA pseudouridine synthase A [Escherichia coli 97.0246]
gi|417139102|ref|ZP_11982629.1| tRNA pseudouridine synthase A [Escherichia coli 97.0259]
gi|417155044|ref|ZP_11993173.1| tRNA pseudouridine synthase A [Escherichia coli 96.0497]
gi|417221684|ref|ZP_12025124.1| tRNA pseudouridine synthase A [Escherichia coli 96.154]
gi|417237743|ref|ZP_12035474.1| tRNA pseudouridine synthase A [Escherichia coli 9.0111]
gi|417268917|ref|ZP_12056277.1| tRNA pseudouridine synthase A [Escherichia coli 3.3884]
gi|417308787|ref|ZP_12095628.1| tRNA pseudouridine synthase A [Escherichia coli PCN033]
gi|417581836|ref|ZP_12232638.1| tRNA pseudouridine synthase A [Escherichia coli STEC_B2F1]
gi|417587337|ref|ZP_12238107.1| tRNA pseudouridine synthase A [Escherichia coli STEC_C165-02]
gi|417602926|ref|ZP_12253496.1| tRNA pseudouridine synthase A [Escherichia coli STEC_94C]
gi|417608959|ref|ZP_12259462.1| tRNA pseudouridine synthase A [Escherichia coli STEC_DG131-3]
gi|417629586|ref|ZP_12279823.1| tRNA pseudouridine synthase A [Escherichia coli STEC_MHI813]
gi|417640076|ref|ZP_12290217.1| tRNA pseudouridine synthase A [Escherichia coli TX1999]
gi|417667732|ref|ZP_12317277.1| tRNA pseudouridine synthase A [Escherichia coli STEC_O31]
gi|417805870|ref|ZP_12452819.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|417833615|ref|ZP_12480063.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|417863362|ref|ZP_12508410.1| hypothetical protein C22711_0295 [Escherichia coli O104:H4 str.
C227-11]
gi|418041777|ref|ZP_12679992.1| tRNA uridine synthase A [Escherichia coli W26]
gi|418943982|ref|ZP_13497107.1| tRNA pseudouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|419046558|ref|ZP_13593495.1| tRNA pseudouridine synthase A [Escherichia coli DEC3A]
gi|419052037|ref|ZP_13598909.1| tRNA pseudouridine synthase A [Escherichia coli DEC3B]
gi|419058068|ref|ZP_13604873.1| tRNA pseudouridine synthase A [Escherichia coli DEC3C]
gi|419063541|ref|ZP_13610269.1| tRNA pseudouridine synthase A [Escherichia coli DEC3D]
gi|419070434|ref|ZP_13616057.1| tRNA pseudouridine synthase A [Escherichia coli DEC3E]
gi|419076457|ref|ZP_13621975.1| tRNA pseudouridine synthase A [Escherichia coli DEC3F]
gi|419081521|ref|ZP_13626969.1| tRNA pseudouridine synthase A [Escherichia coli DEC4A]
gi|419087300|ref|ZP_13632657.1| tRNA pseudouridine synthase A [Escherichia coli DEC4B]
gi|419093326|ref|ZP_13638611.1| tRNA pseudouridine synthase A [Escherichia coli DEC4C]
gi|419099055|ref|ZP_13644254.1| tRNA pseudouridine synthase A [Escherichia coli DEC4D]
gi|419104892|ref|ZP_13650021.1| tRNA pseudouridine synthase A [Escherichia coli DEC4E]
gi|419110344|ref|ZP_13655402.1| tRNA pseudouridine synthase A [Escherichia coli DEC4F]
gi|419115658|ref|ZP_13660675.1| tRNA pseudouridine synthase A [Escherichia coli DEC5A]
gi|419121284|ref|ZP_13666240.1| tRNA pseudouridine synthase A [Escherichia coli DEC5B]
gi|419137376|ref|ZP_13682172.1| tRNA pseudouridine synthase A [Escherichia coli DEC5E]
gi|419170996|ref|ZP_13714882.1| tRNA pseudouridine synthase A [Escherichia coli DEC7A]
gi|419181636|ref|ZP_13725249.1| tRNA pseudouridine synthase A [Escherichia coli DEC7C]
gi|419187079|ref|ZP_13730593.1| tRNA pseudouridine synthase A [Escherichia coli DEC7D]
gi|419192370|ref|ZP_13735823.1| tRNA pseudouridine synthase A [Escherichia coli DEC7E]
gi|419278823|ref|ZP_13821070.1| tRNA pseudouridine synthase A [Escherichia coli DEC10E]
gi|419345986|ref|ZP_13887360.1| tRNA pseudouridine synthase A [Escherichia coli DEC13A]
gi|419350400|ref|ZP_13891738.1| tRNA pseudouridine synthase A [Escherichia coli DEC13B]
gi|419355868|ref|ZP_13897125.1| tRNA pseudouridine synthase A [Escherichia coli DEC13C]
gi|419360962|ref|ZP_13902179.1| tRNA pseudouridine synthase A [Escherichia coli DEC13D]
gi|419366053|ref|ZP_13907214.1| tRNA pseudouridine synthase A [Escherichia coli DEC13E]
gi|419370818|ref|ZP_13911937.1| tRNA pseudouridine synthase A [Escherichia coli DEC14A]
gi|419376260|ref|ZP_13917284.1| tRNA pseudouridine synthase A [Escherichia coli DEC14B]
gi|419381589|ref|ZP_13922540.1| tRNA pseudouridine synthase A [Escherichia coli DEC14C]
gi|419386893|ref|ZP_13927771.1| tRNA pseudouridine synthase A [Escherichia coli DEC14D]
gi|419804054|ref|ZP_14329218.1| tRNA pseudouridine synthase A [Escherichia coli AI27]
gi|419920519|ref|ZP_14438634.1| tRNA pseudouridine synthase A [Escherichia coli KD2]
gi|419932972|ref|ZP_14450246.1| tRNA pseudouridine synthase A [Escherichia coli 576-1]
gi|420270586|ref|ZP_14772944.1| tRNA pseudouridine synthase A [Escherichia coli PA22]
gi|420276335|ref|ZP_14778619.1| tRNA pseudouridine synthase A [Escherichia coli PA40]
gi|420281310|ref|ZP_14783548.1| tRNA pseudouridine synthase A [Escherichia coli TW06591]
gi|420287392|ref|ZP_14789583.1| tRNA pseudouridine synthase A [Escherichia coli TW10246]
gi|420293277|ref|ZP_14795400.1| tRNA pseudouridine synthase A [Escherichia coli TW11039]
gi|420299150|ref|ZP_14801199.1| tRNA pseudouridine synthase A [Escherichia coli TW09109]
gi|420304961|ref|ZP_14806957.1| tRNA pseudouridine synthase A [Escherichia coli TW10119]
gi|420310634|ref|ZP_14812567.1| tRNA pseudouridine synthase A [Escherichia coli EC1738]
gi|420316054|ref|ZP_14817930.1| tRNA pseudouridine synthase A [Escherichia coli EC1734]
gi|420386385|ref|ZP_14885735.1| tRNA pseudouridine synthase A [Escherichia coli EPECa12]
gi|421813289|ref|ZP_16249011.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 8.0416]
gi|421819127|ref|ZP_16254625.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 10.0821]
gi|421824953|ref|ZP_16260320.1| tRNA pseudouridine synthase A [Escherichia coli FRIK920]
gi|421831858|ref|ZP_16267145.1| tRNA pseudouridine synthase A [Escherichia coli PA7]
gi|422334188|ref|ZP_16415195.1| tRNA pseudouridine synthase A [Escherichia coli 4_1_47FAA]
gi|422365021|ref|ZP_16445525.1| tRNA pseudouridine synthase A [Escherichia coli MS 153-1]
gi|422777602|ref|ZP_16831254.1| tRNA pseudouridine synthase A [Escherichia coli H120]
gi|422829616|ref|ZP_16877781.1| tRNA pseudouridine synthase A [Escherichia coli B093]
gi|422834522|ref|ZP_16882583.1| tRNA pseudouridine synthase A [Escherichia coli E101]
gi|422974392|ref|ZP_16976302.1| tRNA pseudouridine synthase A [Escherichia coli TA124]
gi|422988432|ref|ZP_16979205.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|422995323|ref|ZP_16986087.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|423000396|ref|ZP_16991150.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|423004065|ref|ZP_16994811.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|423010640|ref|ZP_17001374.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|423019867|ref|ZP_17010576.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|423025034|ref|ZP_17015731.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|423030855|ref|ZP_17021543.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|423038681|ref|ZP_17029355.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423043800|ref|ZP_17034467.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423045529|ref|ZP_17036189.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423054068|ref|ZP_17042875.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423061043|ref|ZP_17049839.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423706351|ref|ZP_17680734.1| tRNA pseudouridine synthase A [Escherichia coli B799]
gi|423725917|ref|ZP_17700024.1| tRNA pseudouridine synthase A [Escherichia coli PA31]
gi|424078354|ref|ZP_17815357.1| tRNA pseudouridine synthase A [Escherichia coli FDA505]
gi|424084811|ref|ZP_17821321.1| tRNA pseudouridine synthase A [Escherichia coli FDA517]
gi|424091291|ref|ZP_17827236.1| tRNA pseudouridine synthase A [Escherichia coli FRIK1996]
gi|424097870|ref|ZP_17833205.1| tRNA pseudouridine synthase A [Escherichia coli FRIK1985]
gi|424104069|ref|ZP_17838867.1| tRNA pseudouridine synthase A [Escherichia coli FRIK1990]
gi|424110772|ref|ZP_17845029.1| tRNA pseudouridine synthase A [Escherichia coli 93-001]
gi|424116660|ref|ZP_17850523.1| tRNA pseudouridine synthase A [Escherichia coli PA3]
gi|424122875|ref|ZP_17856222.1| tRNA pseudouridine synthase A [Escherichia coli PA5]
gi|424129015|ref|ZP_17861938.1| tRNA pseudouridine synthase A [Escherichia coli PA9]
gi|424135266|ref|ZP_17867752.1| tRNA pseudouridine synthase A [Escherichia coli PA10]
gi|424141869|ref|ZP_17873781.1| tRNA pseudouridine synthase A [Escherichia coli PA14]
gi|424148370|ref|ZP_17879754.1| tRNA pseudouridine synthase A [Escherichia coli PA15]
gi|424154175|ref|ZP_17885149.1| tRNA pseudouridine synthase A [Escherichia coli PA24]
gi|424247998|ref|ZP_17890632.1| tRNA pseudouridine synthase A [Escherichia coli PA25]
gi|424324812|ref|ZP_17896555.1| tRNA pseudouridine synthase A [Escherichia coli PA28]
gi|424450561|ref|ZP_17902283.1| tRNA pseudouridine synthase A [Escherichia coli PA32]
gi|424456755|ref|ZP_17907915.1| tRNA pseudouridine synthase A [Escherichia coli PA33]
gi|424463149|ref|ZP_17913621.1| tRNA pseudouridine synthase A [Escherichia coli PA39]
gi|424469504|ref|ZP_17919350.1| tRNA pseudouridine synthase A [Escherichia coli PA41]
gi|424476045|ref|ZP_17925387.1| tRNA pseudouridine synthase A [Escherichia coli PA42]
gi|424481796|ref|ZP_17930794.1| tRNA pseudouridine synthase A [Escherichia coli TW07945]
gi|424487945|ref|ZP_17936532.1| tRNA pseudouridine synthase A [Escherichia coli TW09098]
gi|424494547|ref|ZP_17942309.1| tRNA pseudouridine synthase A [Escherichia coli TW09195]
gi|424501315|ref|ZP_17948238.1| tRNA pseudouridine synthase A [Escherichia coli EC4203]
gi|424507547|ref|ZP_17953976.1| tRNA pseudouridine synthase A [Escherichia coli EC4196]
gi|424514877|ref|ZP_17959587.1| tRNA pseudouridine synthase A [Escherichia coli TW14313]
gi|424521194|ref|ZP_17965336.1| tRNA pseudouridine synthase A [Escherichia coli TW14301]
gi|424527085|ref|ZP_17970810.1| tRNA pseudouridine synthase A [Escherichia coli EC4421]
gi|424533237|ref|ZP_17976596.1| tRNA pseudouridine synthase A [Escherichia coli EC4422]
gi|424539253|ref|ZP_17982221.1| tRNA pseudouridine synthase A [Escherichia coli EC4013]
gi|424545279|ref|ZP_17987724.1| tRNA pseudouridine synthase A [Escherichia coli EC4402]
gi|424551530|ref|ZP_17993413.1| tRNA pseudouridine synthase A [Escherichia coli EC4439]
gi|424557715|ref|ZP_17999151.1| tRNA pseudouridine synthase A [Escherichia coli EC4436]
gi|424564062|ref|ZP_18005081.1| tRNA pseudouridine synthase A [Escherichia coli EC4437]
gi|424570186|ref|ZP_18010770.1| tRNA pseudouridine synthase A [Escherichia coli EC4448]
gi|424576348|ref|ZP_18016450.1| tRNA pseudouridine synthase A [Escherichia coli EC1845]
gi|424582193|ref|ZP_18021861.1| tRNA pseudouridine synthase A [Escherichia coli EC1863]
gi|425098982|ref|ZP_18501723.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 3.4870]
gi|425105040|ref|ZP_18507369.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 5.2239]
gi|425110957|ref|ZP_18512892.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 6.0172]
gi|425126900|ref|ZP_18528095.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 8.0586]
gi|425132661|ref|ZP_18533524.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 8.2524]
gi|425139127|ref|ZP_18539532.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 10.0833]
gi|425144988|ref|ZP_18544997.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 10.0869]
gi|425151032|ref|ZP_18550665.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 88.0221]
gi|425156916|ref|ZP_18556196.1| tRNA pseudouridine synthase A [Escherichia coli PA34]
gi|425163352|ref|ZP_18562247.1| tRNA pseudouridine synthase A [Escherichia coli FDA506]
gi|425169086|ref|ZP_18567570.1| tRNA pseudouridine synthase A [Escherichia coli FDA507]
gi|425175151|ref|ZP_18573280.1| tRNA pseudouridine synthase A [Escherichia coli FDA504]
gi|425181184|ref|ZP_18578890.1| tRNA pseudouridine synthase A [Escherichia coli FRIK1999]
gi|425187447|ref|ZP_18584730.1| tRNA pseudouridine synthase A [Escherichia coli FRIK1997]
gi|425194218|ref|ZP_18591001.1| tRNA pseudouridine synthase A [Escherichia coli NE1487]
gi|425200653|ref|ZP_18596883.1| tRNA pseudouridine synthase A [Escherichia coli NE037]
gi|425207074|ref|ZP_18602886.1| tRNA pseudouridine synthase A [Escherichia coli FRIK2001]
gi|425212838|ref|ZP_18608248.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA4]
gi|425218958|ref|ZP_18613935.1| tRNA pseudouridine synthase A [Escherichia coli PA23]
gi|425225510|ref|ZP_18619987.1| tRNA pseudouridine synthase A [Escherichia coli PA49]
gi|425231774|ref|ZP_18625823.1| tRNA pseudouridine synthase A [Escherichia coli PA45]
gi|425237691|ref|ZP_18631420.1| tRNA pseudouridine synthase A [Escherichia coli TT12B]
gi|425243909|ref|ZP_18637229.1| tRNA pseudouridine synthase A [Escherichia coli MA6]
gi|425250038|ref|ZP_18642987.1| tRNA pseudouridine synthase A [Escherichia coli 5905]
gi|425255892|ref|ZP_18648427.1| tRNA pseudouridine synthase A [Escherichia coli CB7326]
gi|425262109|ref|ZP_18654139.1| tRNA pseudouridine synthase A [Escherichia coli EC96038]
gi|425268146|ref|ZP_18659790.1| tRNA pseudouridine synthase A [Escherichia coli 5412]
gi|425295586|ref|ZP_18685803.1| tRNA pseudouridine synthase A [Escherichia coli PA38]
gi|425312249|ref|ZP_18701450.1| tRNA pseudouridine synthase A [Escherichia coli EC1735]
gi|425318198|ref|ZP_18707007.1| tRNA pseudouridine synthase A [Escherichia coli EC1736]
gi|425324301|ref|ZP_18712689.1| tRNA pseudouridine synthase A [Escherichia coli EC1737]
gi|425330581|ref|ZP_18718469.1| tRNA pseudouridine synthase A [Escherichia coli EC1846]
gi|425336745|ref|ZP_18724151.1| tRNA pseudouridine synthase A [Escherichia coli EC1847]
gi|425343152|ref|ZP_18730069.1| tRNA pseudouridine synthase A [Escherichia coli EC1848]
gi|425348952|ref|ZP_18735451.1| tRNA pseudouridine synthase A [Escherichia coli EC1849]
gi|425355249|ref|ZP_18741339.1| tRNA pseudouridine synthase A [Escherichia coli EC1850]
gi|425361209|ref|ZP_18746882.1| tRNA pseudouridine synthase A [Escherichia coli EC1856]
gi|425367383|ref|ZP_18752578.1| tRNA pseudouridine synthase A [Escherichia coli EC1862]
gi|425373756|ref|ZP_18758421.1| tRNA pseudouridine synthase A [Escherichia coli EC1864]
gi|425386604|ref|ZP_18770183.1| tRNA pseudouridine synthase A [Escherichia coli EC1866]
gi|425393326|ref|ZP_18776455.1| tRNA pseudouridine synthase A [Escherichia coli EC1868]
gi|425399422|ref|ZP_18782151.1| tRNA pseudouridine synthase A [Escherichia coli EC1869]
gi|425405503|ref|ZP_18787758.1| tRNA pseudouridine synthase A [Escherichia coli EC1870]
gi|425411905|ref|ZP_18793696.1| tRNA pseudouridine synthase A [Escherichia coli NE098]
gi|425418237|ref|ZP_18799530.1| tRNA pseudouridine synthase A [Escherichia coli FRIK523]
gi|425423132|ref|ZP_18804300.1| tRNA pseudouridine synthase A [Escherichia coli 0.1288]
gi|425429568|ref|ZP_18810193.1| tRNA pseudouridine synthase A [Escherichia coli 0.1304]
gi|427805455|ref|ZP_18972522.1| pseudouridylate synthase I [Escherichia coli chi7122]
gi|427810012|ref|ZP_18977077.1| pseudouridylate synthase I [Escherichia coli]
gi|428947937|ref|ZP_19020243.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 88.1467]
gi|428954036|ref|ZP_19025851.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 88.1042]
gi|428959973|ref|ZP_19031307.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 89.0511]
gi|428966545|ref|ZP_19037322.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 90.0091]
gi|428972214|ref|ZP_19042576.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 90.0039]
gi|428978839|ref|ZP_19048681.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 90.2281]
gi|428984633|ref|ZP_19054044.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 93.0055]
gi|428990795|ref|ZP_19059801.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 93.0056]
gi|428996598|ref|ZP_19065226.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 94.0618]
gi|429002836|ref|ZP_19070997.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 95.0183]
gi|429008977|ref|ZP_19076520.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 95.1288]
gi|429015483|ref|ZP_19082391.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 95.0943]
gi|429021398|ref|ZP_19087935.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0428]
gi|429027384|ref|ZP_19093417.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0427]
gi|429033591|ref|ZP_19099133.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0939]
gi|429039692|ref|ZP_19104823.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0932]
gi|429045608|ref|ZP_19110338.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0107]
gi|429050995|ref|ZP_19115572.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 97.0003]
gi|429056339|ref|ZP_19120680.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 97.1742]
gi|429061870|ref|ZP_19125906.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 97.0007]
gi|429068172|ref|ZP_19131656.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0672]
gi|429074079|ref|ZP_19137342.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0678]
gi|429079276|ref|ZP_19142422.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0713]
gi|429719912|ref|ZP_19254843.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429771795|ref|ZP_19303817.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429776737|ref|ZP_19308716.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429785467|ref|ZP_19317364.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429791357|ref|ZP_19323213.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429797184|ref|ZP_19328991.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429798781|ref|ZP_19330581.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429807294|ref|ZP_19339020.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429812194|ref|ZP_19343879.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429817715|ref|ZP_19349355.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429822926|ref|ZP_19354523.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429827278|ref|ZP_19358354.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0109]
gi|429833605|ref|ZP_19363998.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 97.0010]
gi|429904304|ref|ZP_19370283.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429908441|ref|ZP_19374405.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429914312|ref|ZP_19380260.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429919343|ref|ZP_19385275.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429925162|ref|ZP_19391076.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429929099|ref|ZP_19395001.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429935638|ref|ZP_19401524.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429941318|ref|ZP_19407192.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429943998|ref|ZP_19409861.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429951598|ref|ZP_19417444.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429954911|ref|ZP_19420743.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432354258|ref|ZP_19597531.1| tRNA pseudouridine synthase A [Escherichia coli KTE2]
gi|432377478|ref|ZP_19620469.1| tRNA pseudouridine synthase A [Escherichia coli KTE12]
gi|432392834|ref|ZP_19635664.1| tRNA pseudouridine synthase A [Escherichia coli KTE21]
gi|432402610|ref|ZP_19645362.1| tRNA pseudouridine synthase A [Escherichia coli KTE26]
gi|432412527|ref|ZP_19655190.1| tRNA pseudouridine synthase A [Escherichia coli KTE39]
gi|432426875|ref|ZP_19669375.1| tRNA pseudouridine synthase A [Escherichia coli KTE181]
gi|432432604|ref|ZP_19675032.1| tRNA pseudouridine synthase A [Escherichia coli KTE187]
gi|432437040|ref|ZP_19679428.1| tRNA pseudouridine synthase A [Escherichia coli KTE188]
gi|432457424|ref|ZP_19699607.1| tRNA pseudouridine synthase A [Escherichia coli KTE201]
gi|432461340|ref|ZP_19703489.1| tRNA pseudouridine synthase A [Escherichia coli KTE204]
gi|432476565|ref|ZP_19718563.1| tRNA pseudouridine synthase A [Escherichia coli KTE208]
gi|432481685|ref|ZP_19723642.1| tRNA pseudouridine synthase A [Escherichia coli KTE210]
gi|432489996|ref|ZP_19731869.1| tRNA pseudouridine synthase A [Escherichia coli KTE213]
gi|432496423|ref|ZP_19738219.1| tRNA pseudouridine synthase A [Escherichia coli KTE214]
gi|432505164|ref|ZP_19746887.1| tRNA pseudouridine synthase A [Escherichia coli KTE220]
gi|432518389|ref|ZP_19755577.1| tRNA pseudouridine synthase A [Escherichia coli KTE228]
gi|432524512|ref|ZP_19761640.1| tRNA pseudouridine synthase A [Escherichia coli KTE230]
gi|432538511|ref|ZP_19775413.1| tRNA pseudouridine synthase A [Escherichia coli KTE235]
gi|432543930|ref|ZP_19780773.1| tRNA pseudouridine synthase A [Escherichia coli KTE236]
gi|432549420|ref|ZP_19786188.1| tRNA pseudouridine synthase A [Escherichia coli KTE237]
gi|432554406|ref|ZP_19791128.1| tRNA pseudouridine synthase A [Escherichia coli KTE47]
gi|432569396|ref|ZP_19805907.1| tRNA pseudouridine synthase A [Escherichia coli KTE53]
gi|432593581|ref|ZP_19829897.1| tRNA pseudouridine synthase A [Escherichia coli KTE60]
gi|432622570|ref|ZP_19858601.1| tRNA pseudouridine synthase A [Escherichia coli KTE76]
gi|432632105|ref|ZP_19868031.1| tRNA pseudouridine synthase A [Escherichia coli KTE80]
gi|432641820|ref|ZP_19877654.1| tRNA pseudouridine synthase A [Escherichia coli KTE83]
gi|432651890|ref|ZP_19887643.1| tRNA pseudouridine synthase A [Escherichia coli KTE87]
gi|432666715|ref|ZP_19902296.1| tRNA pseudouridine synthase A [Escherichia coli KTE116]
gi|432680936|ref|ZP_19916310.1| tRNA pseudouridine synthase A [Escherichia coli KTE143]
gi|432719439|ref|ZP_19954408.1| tRNA pseudouridine synthase A [Escherichia coli KTE9]
gi|432750790|ref|ZP_19985394.1| tRNA pseudouridine synthase A [Escherichia coli KTE29]
gi|432771286|ref|ZP_20005621.1| tRNA pseudouridine synthase A [Escherichia coli KTE50]
gi|432775411|ref|ZP_20009682.1| tRNA pseudouridine synthase A [Escherichia coli KTE54]
gi|432793534|ref|ZP_20027618.1| tRNA pseudouridine synthase A [Escherichia coli KTE78]
gi|432799492|ref|ZP_20033514.1| tRNA pseudouridine synthase A [Escherichia coli KTE79]
gi|432816072|ref|ZP_20049856.1| tRNA pseudouridine synthase A [Escherichia coli KTE115]
gi|432832337|ref|ZP_20065911.1| tRNA pseudouridine synthase A [Escherichia coli KTE135]
gi|432835295|ref|ZP_20068834.1| tRNA pseudouridine synthase A [Escherichia coli KTE136]
gi|432840022|ref|ZP_20073489.1| tRNA pseudouridine synthase A [Escherichia coli KTE140]
gi|432845318|ref|ZP_20078118.1| tRNA pseudouridine synthase A [Escherichia coli KTE141]
gi|432851837|ref|ZP_20081993.1| tRNA pseudouridine synthase A [Escherichia coli KTE144]
gi|432862914|ref|ZP_20087203.1| tRNA pseudouridine synthase A [Escherichia coli KTE146]
gi|432869683|ref|ZP_20090276.1| tRNA pseudouridine synthase A [Escherichia coli KTE147]
gi|432887300|ref|ZP_20101374.1| tRNA pseudouridine synthase A [Escherichia coli KTE158]
gi|432913498|ref|ZP_20119195.1| tRNA pseudouridine synthase A [Escherichia coli KTE190]
gi|432962548|ref|ZP_20152141.1| tRNA pseudouridine synthase A [Escherichia coli KTE202]
gi|432974464|ref|ZP_20163302.1| tRNA pseudouridine synthase A [Escherichia coli KTE209]
gi|432996070|ref|ZP_20184656.1| tRNA pseudouridine synthase A [Escherichia coli KTE218]
gi|433000639|ref|ZP_20189164.1| tRNA pseudouridine synthase A [Escherichia coli KTE223]
gi|433019393|ref|ZP_20207608.1| tRNA pseudouridine synthase A [Escherichia coli KTE105]
gi|433053926|ref|ZP_20241105.1| tRNA pseudouridine synthase A [Escherichia coli KTE122]
gi|433058834|ref|ZP_20245880.1| tRNA pseudouridine synthase A [Escherichia coli KTE124]
gi|433063782|ref|ZP_20250703.1| tRNA pseudouridine synthase A [Escherichia coli KTE125]
gi|433068631|ref|ZP_20255420.1| tRNA pseudouridine synthase A [Escherichia coli KTE128]
gi|433087995|ref|ZP_20274366.1| tRNA pseudouridine synthase A [Escherichia coli KTE137]
gi|433092696|ref|ZP_20278963.1| tRNA pseudouridine synthase A [Escherichia coli KTE138]
gi|433116250|ref|ZP_20302041.1| tRNA pseudouridine synthase A [Escherichia coli KTE153]
gi|433125919|ref|ZP_20311477.1| tRNA pseudouridine synthase A [Escherichia coli KTE160]
gi|433130886|ref|ZP_20316321.1| tRNA pseudouridine synthase A [Escherichia coli KTE163]
gi|433135548|ref|ZP_20320892.1| tRNA pseudouridine synthase A [Escherichia coli KTE166]
gi|433139989|ref|ZP_20325244.1| tRNA pseudouridine synthase A [Escherichia coli KTE167]
gi|433149905|ref|ZP_20334926.1| tRNA pseudouridine synthase A [Escherichia coli KTE174]
gi|433159363|ref|ZP_20344200.1| tRNA pseudouridine synthase A [Escherichia coli KTE177]
gi|433179176|ref|ZP_20363574.1| tRNA pseudouridine synthase A [Escherichia coli KTE82]
gi|433203936|ref|ZP_20387710.1| tRNA pseudouridine synthase A [Escherichia coli KTE95]
gi|433208489|ref|ZP_20392163.1| tRNA pseudouridine synthase A [Escherichia coli KTE97]
gi|433213225|ref|ZP_20396815.1| tRNA pseudouridine synthase A [Escherichia coli KTE99]
gi|442608095|ref|ZP_21022855.1| tRNA pseudouridine synthase A [Escherichia coli Nissle 1917]
gi|443618393|ref|YP_007382249.1| tRNA pseudouridine synthase A [Escherichia coli APEC O78]
gi|444925862|ref|ZP_21245177.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 09BKT078844]
gi|444931573|ref|ZP_21250627.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0814]
gi|444936981|ref|ZP_21255772.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0815]
gi|444942609|ref|ZP_21261141.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0816]
gi|444948172|ref|ZP_21266492.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0839]
gi|444953676|ref|ZP_21271785.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0848]
gi|444959167|ref|ZP_21277033.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1753]
gi|444964289|ref|ZP_21281916.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1775]
gi|444970305|ref|ZP_21287679.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1793]
gi|444975558|ref|ZP_21292701.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1805]
gi|444981026|ref|ZP_21297944.1| tRNA pseudouridine(38-40) synthase [Escherichia coli ATCC 700728]
gi|444986379|ref|ZP_21303171.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA11]
gi|444991677|ref|ZP_21308332.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA19]
gi|444996990|ref|ZP_21313499.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA13]
gi|445002545|ref|ZP_21318943.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA2]
gi|445008044|ref|ZP_21324295.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA47]
gi|445013073|ref|ZP_21329191.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA48]
gi|445018953|ref|ZP_21334927.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA8]
gi|445024460|ref|ZP_21340293.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 7.1982]
gi|445029735|ref|ZP_21345422.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1781]
gi|445035197|ref|ZP_21350737.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1762]
gi|445040823|ref|ZP_21356210.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA35]
gi|445046017|ref|ZP_21361279.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 3.4880]
gi|445051650|ref|ZP_21366704.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 95.0083]
gi|445057348|ref|ZP_21372218.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0670]
gi|452971863|ref|ZP_21970090.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4009]
gi|54039780|sp|P65845.1|TRUA_ECO57 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|54042085|sp|P65844.1|TRUA_ECOL6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|123755724|sp|Q32DL8.1|TRUA_SHIDS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226708651|sp|B7NNZ9.1|TRUA_ECO7I RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226708653|sp|B7N5T0.1|TRUA_ECOLU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226708654|sp|B1LLS3.1|TRUA_ECOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238057729|sp|B5YXV8.1|TRUA_ECO5E RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254789635|sp|B7LBH2.1|TRUA_ECO55 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|12516677|gb|AAG57447.1|AE005463_10 pseudouridylate synthase I [Escherichia coli O157:H7 str. EDL933]
gi|26109112|gb|AAN81315.1|AE016763_274 tRNA pseudouridine synthase A [Escherichia coli CFT073]
gi|13362672|dbj|BAB36625.1| pseudouridylate synthase I [Escherichia coli O157:H7 str. Sakai]
gi|81241877|gb|ABB62587.1| pseudouridylate synthase I [Shigella dysenteriae Sd197]
gi|170517806|gb|ACB15984.1| tRNA pseudouridine synthase A [Escherichia coli SMS-3-5]
gi|187771144|gb|EDU34988.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|188017261|gb|EDU55383.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|189001906|gb|EDU70892.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|189357607|gb|EDU76026.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|189362830|gb|EDU81249.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|189368293|gb|EDU86709.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|189372810|gb|EDU91226.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC869]
gi|189378874|gb|EDU97290.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC508]
gi|208727696|gb|EDZ77297.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208733139|gb|EDZ81826.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208741667|gb|EDZ89349.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209158676|gb|ACI36109.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|209764788|gb|ACI80706.1| pseudouridylate synthase I [Escherichia coli]
gi|209764790|gb|ACI80707.1| pseudouridylate synthase I [Escherichia coli]
gi|209764792|gb|ACI80708.1| pseudouridylate synthase I [Escherichia coli]
gi|209764796|gb|ACI80710.1| pseudouridylate synthase I [Escherichia coli]
gi|217319539|gb|EEC27964.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|218352649|emb|CAU98430.1| pseudouridylate synthase I [Escherichia coli 55989]
gi|218370780|emb|CAR18593.1| pseudouridylate synthase I [Escherichia coli IAI39]
gi|218432945|emb|CAR13839.1| pseudouridylate synthase I [Escherichia coli UMN026]
gi|222034074|emb|CAP76815.1| tRNA pseudouridine synthase A [Escherichia coli LF82]
gi|227835728|gb|EEJ46194.1| tRNA pseudouridine synthase A [Escherichia coli 83972]
gi|254593611|gb|ACT72972.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
gi|284922306|emb|CBG35391.1| tRNA pseudouridine synthase A [Escherichia coli 042]
gi|290763432|gb|ADD57393.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. CB9615]
gi|291323485|gb|EFE62913.1| tRNA pseudouridine synthase A [Escherichia coli B088]
gi|291427992|gb|EFF01019.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1412]
gi|291433259|gb|EFF06238.1| tRNA pseudouridine synthase A [Escherichia coli B185]
gi|291471143|gb|EFF13627.1| tRNA pseudouridine synthase A [Escherichia coli B354]
gi|298278909|gb|EFI20423.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1302]
gi|300299124|gb|EFJ55509.1| tRNA pseudouridine synthase A [Escherichia coli MS 185-1]
gi|300396694|gb|EFJ80232.1| tRNA pseudouridine synthase A [Escherichia coli MS 69-1]
gi|300408504|gb|EFJ92042.1| tRNA pseudouridine synthase A [Escherichia coli MS 45-1]
gi|300458008|gb|EFK21501.1| tRNA pseudouridine synthase A [Escherichia coli MS 21-1]
gi|300525323|gb|EFK46392.1| tRNA pseudouridine synthase A [Escherichia coli MS 119-7]
gi|300841394|gb|EFK69154.1| tRNA pseudouridine synthase A [Escherichia coli MS 124-1]
gi|306908627|gb|EFN39124.1| tRNA pseudouridine synthase A [Escherichia coli W]
gi|307554380|gb|ADN47155.1| tRNA pseudouridine synthase A [Escherichia coli ABU 83972]
gi|308123487|gb|EFO60749.1| tRNA pseudouridine synthase A [Escherichia coli MS 145-7]
gi|308927342|gb|EFP72816.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1617]
gi|312946937|gb|ADR27764.1| tRNA pseudouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|315061611|gb|ADT75938.1| pseudouridylate synthase I [Escherichia coli W]
gi|315255255|gb|EFU35223.1| tRNA pseudouridine synthase A [Escherichia coli MS 85-1]
gi|315292275|gb|EFU51627.1| tRNA pseudouridine synthase A [Escherichia coli MS 153-1]
gi|320192058|gb|EFW66703.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|320641146|gb|EFX10625.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. G5101]
gi|320646361|gb|EFX15284.1| tRNA pseudouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|320651631|gb|EFX20011.1| tRNA pseudouridine synthase A [Escherichia coli O157:H- str. H
2687]
gi|320657383|gb|EFX25185.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320662918|gb|EFX30242.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|320667662|gb|EFX34573.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
gi|323184362|gb|EFZ69738.1| tRNA pseudouridine synthase A [Escherichia coli OK1357]
gi|323377808|gb|ADX50076.1| tRNA pseudouridine synthase A [Escherichia coli KO11FL]
gi|323944831|gb|EGB40897.1| tRNA pseudouridine synthase A [Escherichia coli H120]
gi|326339671|gb|EGD63482.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|326344133|gb|EGD67894.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|331059634|gb|EGI31611.1| tRNA pseudouridine synthase A [Escherichia coli TA143]
gi|331064211|gb|EGI36122.1| tRNA pseudouridine synthase A [Escherichia coli TA271]
gi|331069093|gb|EGI40485.1| tRNA pseudouridine synthase A [Escherichia coli TA280]
gi|331074724|gb|EGI46044.1| tRNA pseudouridine synthase A [Escherichia coli H591]
gi|338769415|gb|EGP24194.1| tRNA pseudouridine synthase A [Escherichia coli PCN033]
gi|340734497|gb|EGR63627.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|340739782|gb|EGR74014.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|341916651|gb|EGT66268.1| hypothetical protein C22711_0295 [Escherichia coli O104:H4 str.
C227-11]
gi|345336473|gb|EGW68909.1| tRNA pseudouridine synthase A [Escherichia coli STEC_C165-02]
gi|345337607|gb|EGW70039.1| tRNA pseudouridine synthase A [Escherichia coli STEC_B2F1]
gi|345350592|gb|EGW82867.1| tRNA pseudouridine synthase A [Escherichia coli STEC_94C]
gi|345358168|gb|EGW90356.1| tRNA pseudouridine synthase A [Escherichia coli STEC_DG131-3]
gi|345372333|gb|EGX04297.1| tRNA pseudouridine synthase A [Escherichia coli STEC_MHI813]
gi|345393078|gb|EGX22856.1| tRNA pseudouridine synthase A [Escherichia coli TX1999]
gi|349738760|gb|AEQ13466.1| pseudouridylate synthase I [Escherichia coli O7:K1 str. CE10]
gi|354862158|gb|EHF22596.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|354867443|gb|EHF27865.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|354869512|gb|EHF29922.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|354873367|gb|EHF33744.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|354880123|gb|EHF40459.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|354889547|gb|EHF49796.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|354893142|gb|EHF53346.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|354895279|gb|EHF55468.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354897553|gb|EHF57711.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|354898914|gb|EHF59065.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354912965|gb|EHF72963.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354915970|gb|EHF75946.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354917885|gb|EHF77847.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|355421014|gb|AER85211.1| tRNA pseudouridine synthase A [Escherichia coli str. 'clone D i2']
gi|355425934|gb|AER90130.1| tRNA pseudouridine synthase A [Escherichia coli str. 'clone D i14']
gi|371595771|gb|EHN84618.1| tRNA pseudouridine synthase A [Escherichia coli TA124]
gi|371601314|gb|EHN90064.1| tRNA pseudouridine synthase A [Escherichia coli E101]
gi|371608928|gb|EHN97477.1| tRNA pseudouridine synthase A [Escherichia coli B093]
gi|373244827|gb|EHP64305.1| tRNA pseudouridine synthase A [Escherichia coli 4_1_47FAA]
gi|375320708|gb|EHS66628.1| tRNA pseudouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|377893388|gb|EHU57827.1| tRNA pseudouridine synthase A [Escherichia coli DEC3A]
gi|377893722|gb|EHU58156.1| tRNA pseudouridine synthase A [Escherichia coli DEC3B]
gi|377904655|gb|EHU68933.1| tRNA pseudouridine synthase A [Escherichia coli DEC3C]
gi|377910016|gb|EHU74214.1| tRNA pseudouridine synthase A [Escherichia coli DEC3D]
gi|377912264|gb|EHU76427.1| tRNA pseudouridine synthase A [Escherichia coli DEC3E]
gi|377921498|gb|EHU85497.1| tRNA pseudouridine synthase A [Escherichia coli DEC3F]
gi|377926151|gb|EHU90086.1| tRNA pseudouridine synthase A [Escherichia coli DEC4A]
gi|377930490|gb|EHU94373.1| tRNA pseudouridine synthase A [Escherichia coli DEC4B]
gi|377941768|gb|EHV05505.1| tRNA pseudouridine synthase A [Escherichia coli DEC4C]
gi|377942165|gb|EHV05901.1| tRNA pseudouridine synthase A [Escherichia coli DEC4D]
gi|377947375|gb|EHV11042.1| tRNA pseudouridine synthase A [Escherichia coli DEC4E]
gi|377957226|gb|EHV20762.1| tRNA pseudouridine synthase A [Escherichia coli DEC4F]
gi|377960252|gb|EHV23736.1| tRNA pseudouridine synthase A [Escherichia coli DEC5A]
gi|377966508|gb|EHV29919.1| tRNA pseudouridine synthase A [Escherichia coli DEC5B]
gi|377984369|gb|EHV47604.1| tRNA pseudouridine synthase A [Escherichia coli DEC5E]
gi|378015040|gb|EHV77937.1| tRNA pseudouridine synthase A [Escherichia coli DEC7A]
gi|378023269|gb|EHV85946.1| tRNA pseudouridine synthase A [Escherichia coli DEC7C]
gi|378029071|gb|EHV91687.1| tRNA pseudouridine synthase A [Escherichia coli DEC7D]
gi|378038434|gb|EHW00949.1| tRNA pseudouridine synthase A [Escherichia coli DEC7E]
gi|378128248|gb|EHW89633.1| tRNA pseudouridine synthase A [Escherichia coli DEC10E]
gi|378185434|gb|EHX46059.1| tRNA pseudouridine synthase A [Escherichia coli DEC13A]
gi|378200130|gb|EHX60586.1| tRNA pseudouridine synthase A [Escherichia coli DEC13C]
gi|378200578|gb|EHX61033.1| tRNA pseudouridine synthase A [Escherichia coli DEC13B]
gi|378202609|gb|EHX63036.1| tRNA pseudouridine synthase A [Escherichia coli DEC13D]
gi|378212362|gb|EHX72685.1| tRNA pseudouridine synthase A [Escherichia coli DEC13E]
gi|378217412|gb|EHX77691.1| tRNA pseudouridine synthase A [Escherichia coli DEC14A]
gi|378218983|gb|EHX79252.1| tRNA pseudouridine synthase A [Escherichia coli DEC14B]
gi|378227956|gb|EHX88124.1| tRNA pseudouridine synthase A [Escherichia coli DEC14C]
gi|378231420|gb|EHX91531.1| tRNA pseudouridine synthase A [Escherichia coli DEC14D]
gi|383392235|gb|AFH17193.1| tRNA pseudouridine synthase A [Escherichia coli KO11FL]
gi|383405872|gb|AFH12115.1| tRNA pseudouridine synthase A [Escherichia coli W]
gi|383475348|gb|EID67312.1| tRNA uridine synthase A [Escherichia coli W26]
gi|384472981|gb|EIE57028.1| tRNA pseudouridine synthase A [Escherichia coli AI27]
gi|385712235|gb|EIG49190.1| tRNA pseudouridine synthase A [Escherichia coli B799]
gi|386147924|gb|EIG94364.1| tRNA pseudouridine synthase A [Escherichia coli 97.0246]
gi|386157747|gb|EIH14087.1| tRNA pseudouridine synthase A [Escherichia coli 97.0259]
gi|386168133|gb|EIH34649.1| tRNA pseudouridine synthase A [Escherichia coli 96.0497]
gi|386201486|gb|EII00477.1| tRNA pseudouridine synthase A [Escherichia coli 96.154]
gi|386213521|gb|EII23946.1| tRNA pseudouridine synthase A [Escherichia coli 9.0111]
gi|386227722|gb|EII55078.1| tRNA pseudouridine synthase A [Escherichia coli 3.3884]
gi|386796991|gb|AFJ30025.1| tRNA pseudouridine synthase A [Escherichia coli Xuzhou21]
gi|388384699|gb|EIL46414.1| tRNA pseudouridine synthase A [Escherichia coli KD2]
gi|388414770|gb|EIL74717.1| tRNA pseudouridine synthase A [Escherichia coli 576-1]
gi|390641866|gb|EIN21290.1| tRNA pseudouridine synthase A [Escherichia coli FRIK1996]
gi|390643292|gb|EIN22655.1| tRNA pseudouridine synthase A [Escherichia coli FDA517]
gi|390644073|gb|EIN23373.1| tRNA pseudouridine synthase A [Escherichia coli FDA505]
gi|390660633|gb|EIN38331.1| tRNA pseudouridine synthase A [Escherichia coli 93-001]
gi|390662206|gb|EIN39823.1| tRNA pseudouridine synthase A [Escherichia coli FRIK1985]
gi|390664040|gb|EIN41510.1| tRNA pseudouridine synthase A [Escherichia coli FRIK1990]
gi|390677753|gb|EIN53763.1| tRNA pseudouridine synthase A [Escherichia coli PA3]
gi|390680984|gb|EIN56795.1| tRNA pseudouridine synthase A [Escherichia coli PA5]
gi|390683692|gb|EIN59352.1| tRNA pseudouridine synthase A [Escherichia coli PA9]
gi|390696706|gb|EIN71148.1| tRNA pseudouridine synthase A [Escherichia coli PA10]
gi|390700430|gb|EIN74731.1| tRNA pseudouridine synthase A [Escherichia coli PA15]
gi|390701566|gb|EIN75789.1| tRNA pseudouridine synthase A [Escherichia coli PA14]
gi|390714098|gb|EIN87012.1| tRNA pseudouridine synthase A [Escherichia coli PA22]
gi|390723025|gb|EIN95650.1| tRNA pseudouridine synthase A [Escherichia coli PA25]
gi|390724382|gb|EIN96939.1| tRNA pseudouridine synthase A [Escherichia coli PA24]
gi|390727752|gb|EIO00143.1| tRNA pseudouridine synthase A [Escherichia coli PA28]
gi|390742806|gb|EIO13801.1| tRNA pseudouridine synthase A [Escherichia coli PA31]
gi|390742979|gb|EIO13967.1| tRNA pseudouridine synthase A [Escherichia coli PA32]
gi|390745701|gb|EIO16490.1| tRNA pseudouridine synthase A [Escherichia coli PA33]
gi|390757745|gb|EIO27215.1| tRNA pseudouridine synthase A [Escherichia coli PA40]
gi|390767950|gb|EIO37016.1| tRNA pseudouridine synthase A [Escherichia coli PA41]
gi|390768909|gb|EIO37888.1| tRNA pseudouridine synthase A [Escherichia coli PA39]
gi|390769266|gb|EIO38201.1| tRNA pseudouridine synthase A [Escherichia coli PA42]
gi|390781597|gb|EIO49274.1| tRNA pseudouridine synthase A [Escherichia coli TW06591]
gi|390790149|gb|EIO57577.1| tRNA pseudouridine synthase A [Escherichia coli TW10246]
gi|390790892|gb|EIO58288.1| tRNA pseudouridine synthase A [Escherichia coli TW07945]
gi|390797363|gb|EIO64619.1| tRNA pseudouridine synthase A [Escherichia coli TW11039]
gi|390806458|gb|EIO73370.1| tRNA pseudouridine synthase A [Escherichia coli TW09098]
gi|390806845|gb|EIO73747.1| tRNA pseudouridine synthase A [Escherichia coli TW09109]
gi|390815983|gb|EIO82495.1| tRNA pseudouridine synthase A [Escherichia coli TW10119]
gi|390826113|gb|EIO91975.1| tRNA pseudouridine synthase A [Escherichia coli EC4203]
gi|390830618|gb|EIO96134.1| tRNA pseudouridine synthase A [Escherichia coli TW09195]
gi|390831450|gb|EIO96827.1| tRNA pseudouridine synthase A [Escherichia coli EC4196]
gi|390846025|gb|EIP09638.1| tRNA pseudouridine synthase A [Escherichia coli TW14301]
gi|390846934|gb|EIP10498.1| tRNA pseudouridine synthase A [Escherichia coli TW14313]
gi|390850482|gb|EIP13857.1| tRNA pseudouridine synthase A [Escherichia coli EC4421]
gi|390861162|gb|EIP23438.1| tRNA pseudouridine synthase A [Escherichia coli EC4422]
gi|390865710|gb|EIP27710.1| tRNA pseudouridine synthase A [Escherichia coli EC4013]
gi|390870893|gb|EIP32352.1| tRNA pseudouridine synthase A [Escherichia coli EC4402]
gi|390878772|gb|EIP39589.1| tRNA pseudouridine synthase A [Escherichia coli EC4439]
gi|390883786|gb|EIP44181.1| tRNA pseudouridine synthase A [Escherichia coli EC4436]
gi|390893802|gb|EIP53341.1| tRNA pseudouridine synthase A [Escherichia coli EC4437]
gi|390896081|gb|EIP55480.1| tRNA pseudouridine synthase A [Escherichia coli EC4448]
gi|390899913|gb|EIP59149.1| tRNA pseudouridine synthase A [Escherichia coli EC1738]
gi|390908044|gb|EIP66885.1| tRNA pseudouridine synthase A [Escherichia coli EC1734]
gi|390919427|gb|EIP77780.1| tRNA pseudouridine synthase A [Escherichia coli EC1863]
gi|390920421|gb|EIP78693.1| tRNA pseudouridine synthase A [Escherichia coli EC1845]
gi|391305095|gb|EIQ62890.1| tRNA pseudouridine synthase A [Escherichia coli EPECa12]
gi|397784878|gb|EJK95731.1| tRNA pseudouridine synthase A [Escherichia coli STEC_O31]
gi|406776848|gb|AFS56272.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407053436|gb|AFS73487.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|407066233|gb|AFS87280.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408064230|gb|EKG98712.1| tRNA pseudouridine synthase A [Escherichia coli PA7]
gi|408068005|gb|EKH02433.1| tRNA pseudouridine synthase A [Escherichia coli FRIK920]
gi|408070995|gb|EKH05350.1| tRNA pseudouridine synthase A [Escherichia coli PA34]
gi|408078940|gb|EKH13068.1| tRNA pseudouridine synthase A [Escherichia coli FDA506]
gi|408082767|gb|EKH16727.1| tRNA pseudouridine synthase A [Escherichia coli FDA507]
gi|408091160|gb|EKH24394.1| tRNA pseudouridine synthase A [Escherichia coli FDA504]
gi|408097209|gb|EKH30108.1| tRNA pseudouridine synthase A [Escherichia coli FRIK1999]
gi|408104329|gb|EKH36651.1| tRNA pseudouridine synthase A [Escherichia coli FRIK1997]
gi|408108559|gb|EKH40562.1| tRNA pseudouridine synthase A [Escherichia coli NE1487]
gi|408115268|gb|EKH46734.1| tRNA pseudouridine synthase A [Escherichia coli NE037]
gi|408121391|gb|EKH52352.1| tRNA pseudouridine synthase A [Escherichia coli FRIK2001]
gi|408127330|gb|EKH57820.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA4]
gi|408137771|gb|EKH67466.1| tRNA pseudouridine synthase A [Escherichia coli PA23]
gi|408139767|gb|EKH69359.1| tRNA pseudouridine synthase A [Escherichia coli PA49]
gi|408146175|gb|EKH75318.1| tRNA pseudouridine synthase A [Escherichia coli PA45]
gi|408155240|gb|EKH83566.1| tRNA pseudouridine synthase A [Escherichia coli TT12B]
gi|408160188|gb|EKH88232.1| tRNA pseudouridine synthase A [Escherichia coli MA6]
gi|408163896|gb|EKH91743.1| tRNA pseudouridine synthase A [Escherichia coli 5905]
gi|408173665|gb|EKI00685.1| tRNA pseudouridine synthase A [Escherichia coli CB7326]
gi|408180776|gb|EKI07381.1| tRNA pseudouridine synthase A [Escherichia coli EC96038]
gi|408182788|gb|EKI09272.1| tRNA pseudouridine synthase A [Escherichia coli 5412]
gi|408217601|gb|EKI41843.1| tRNA pseudouridine synthase A [Escherichia coli PA38]
gi|408227475|gb|EKI51061.1| tRNA pseudouridine synthase A [Escherichia coli EC1735]
gi|408238532|gb|EKI61326.1| tRNA pseudouridine synthase A [Escherichia coli EC1736]
gi|408242890|gb|EKI65442.1| tRNA pseudouridine synthase A [Escherichia coli EC1737]
gi|408247242|gb|EKI69459.1| tRNA pseudouridine synthase A [Escherichia coli EC1846]
gi|408256495|gb|EKI77874.1| tRNA pseudouridine synthase A [Escherichia coli EC1847]
gi|408259427|gb|EKI80614.1| tRNA pseudouridine synthase A [Escherichia coli EC1848]
gi|408265819|gb|EKI86501.1| tRNA pseudouridine synthase A [Escherichia coli EC1849]
gi|408275092|gb|EKI95074.1| tRNA pseudouridine synthase A [Escherichia coli EC1850]
gi|408277405|gb|EKI97215.1| tRNA pseudouridine synthase A [Escherichia coli EC1856]
gi|408286960|gb|EKJ05865.1| tRNA pseudouridine synthase A [Escherichia coli EC1862]
gi|408291086|gb|EKJ09726.1| tRNA pseudouridine synthase A [Escherichia coli EC1864]
gi|408308145|gb|EKJ25422.1| tRNA pseudouridine synthase A [Escherichia coli EC1866]
gi|408308192|gb|EKJ25468.1| tRNA pseudouridine synthase A [Escherichia coli EC1868]
gi|408319273|gb|EKJ35421.1| tRNA pseudouridine synthase A [Escherichia coli EC1869]
gi|408326070|gb|EKJ41903.1| tRNA pseudouridine synthase A [Escherichia coli EC1870]
gi|408326943|gb|EKJ42712.1| tRNA pseudouridine synthase A [Escherichia coli NE098]
gi|408336658|gb|EKJ51412.1| tRNA pseudouridine synthase A [Escherichia coli FRIK523]
gi|408343687|gb|EKJ58081.1| tRNA pseudouridine synthase A [Escherichia coli 0.1288]
gi|408346309|gb|EKJ60605.1| tRNA pseudouridine synthase A [Escherichia coli 0.1304]
gi|408549849|gb|EKK27201.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 3.4870]
gi|408550039|gb|EKK27384.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 5.2239]
gi|408551207|gb|EKK28494.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 6.0172]
gi|408569879|gb|EKK45864.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 8.0586]
gi|408579597|gb|EKK55050.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 10.0833]
gi|408581325|gb|EKK56673.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 8.2524]
gi|408591709|gb|EKK66130.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 10.0869]
gi|408596396|gb|EKK70529.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 88.0221]
gi|408601113|gb|EKK74929.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 8.0416]
gi|408612884|gb|EKK86218.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 10.0821]
gi|412963637|emb|CCK47562.1| pseudouridylate synthase I [Escherichia coli chi7122]
gi|412970191|emb|CCJ44835.1| pseudouridylate synthase I [Escherichia coli]
gi|427205185|gb|EKV75445.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 88.1042]
gi|427207562|gb|EKV77731.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 89.0511]
gi|427208796|gb|EKV78885.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 88.1467]
gi|427222073|gb|EKV90872.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 90.0091]
gi|427224313|gb|EKV93023.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 90.2281]
gi|427227956|gb|EKV96440.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 90.0039]
gi|427242090|gb|EKW09508.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 93.0056]
gi|427242599|gb|EKW10002.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 93.0055]
gi|427246180|gb|EKW13400.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 94.0618]
gi|427261291|gb|EKW27228.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 95.0943]
gi|427261834|gb|EKW27751.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 95.0183]
gi|427264913|gb|EKW30543.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 95.1288]
gi|427276361|gb|EKW40934.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0428]
gi|427279787|gb|EKW44198.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0427]
gi|427283553|gb|EKW47761.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0939]
gi|427291911|gb|EKW55281.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0932]
gi|427299303|gb|EKW62278.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0107]
gi|427300599|gb|EKW63530.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 97.0003]
gi|427313143|gb|EKW75272.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 97.1742]
gi|427315674|gb|EKW77662.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 97.0007]
gi|427319862|gb|EKW81665.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0672]
gi|427328424|gb|EKW89791.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0678]
gi|427329262|gb|EKW90593.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0713]
gi|429254073|gb|EKY38522.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 96.0109]
gi|429255768|gb|EKY40063.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 97.0010]
gi|429348643|gb|EKY85404.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429360052|gb|EKY96712.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429361862|gb|EKY98514.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429362134|gb|EKY98782.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429362710|gb|EKY99356.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429365024|gb|EKZ01641.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429375755|gb|EKZ12288.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429379049|gb|EKZ15555.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429380400|gb|EKZ16891.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429391931|gb|EKZ28333.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429405316|gb|EKZ41582.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429407082|gb|EKZ43336.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429410830|gb|EKZ47051.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429414542|gb|EKZ50717.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429421151|gb|EKZ57273.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429429485|gb|EKZ65554.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429432172|gb|EKZ68212.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429436378|gb|EKZ72394.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429438583|gb|EKZ74576.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429448205|gb|EKZ84122.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429451205|gb|EKZ87096.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429457868|gb|EKZ93706.1| tRNA pseudouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|430875431|gb|ELB98973.1| tRNA pseudouridine synthase A [Escherichia coli KTE2]
gi|430898777|gb|ELC20910.1| tRNA pseudouridine synthase A [Escherichia coli KTE12]
gi|430917990|gb|ELC39029.1| tRNA pseudouridine synthase A [Escherichia coli KTE21]
gi|430925081|gb|ELC45754.1| tRNA pseudouridine synthase A [Escherichia coli KTE26]
gi|430934934|gb|ELC55281.1| tRNA pseudouridine synthase A [Escherichia coli KTE39]
gi|430952345|gb|ELC71410.1| tRNA pseudouridine synthase A [Escherichia coli KTE187]
gi|430955128|gb|ELC73920.1| tRNA pseudouridine synthase A [Escherichia coli KTE181]
gi|430962371|gb|ELC80228.1| tRNA pseudouridine synthase A [Escherichia coli KTE188]
gi|430981717|gb|ELC98440.1| tRNA pseudouridine synthase A [Escherichia coli KTE201]
gi|430989030|gb|ELD05499.1| tRNA pseudouridine synthase A [Escherichia coli KTE204]
gi|431005181|gb|ELD20389.1| tRNA pseudouridine synthase A [Escherichia coli KTE208]
gi|431007057|gb|ELD22026.1| tRNA pseudouridine synthase A [Escherichia coli KTE210]
gi|431020271|gb|ELD33627.1| tRNA pseudouridine synthase A [Escherichia coli KTE213]
gi|431023681|gb|ELD36876.1| tRNA pseudouridine synthase A [Escherichia coli KTE214]
gi|431037514|gb|ELD48490.1| tRNA pseudouridine synthase A [Escherichia coli KTE220]
gi|431051011|gb|ELD60687.1| tRNA pseudouridine synthase A [Escherichia coli KTE228]
gi|431051628|gb|ELD61291.1| tRNA pseudouridine synthase A [Escherichia coli KTE230]
gi|431069400|gb|ELD77729.1| tRNA pseudouridine synthase A [Escherichia coli KTE235]
gi|431074340|gb|ELD81904.1| tRNA pseudouridine synthase A [Escherichia coli KTE236]
gi|431079698|gb|ELD86652.1| tRNA pseudouridine synthase A [Escherichia coli KTE237]
gi|431083452|gb|ELD89628.1| tRNA pseudouridine synthase A [Escherichia coli KTE47]
gi|431099172|gb|ELE04471.1| tRNA pseudouridine synthase A [Escherichia coli KTE53]
gi|431127179|gb|ELE29488.1| tRNA pseudouridine synthase A [Escherichia coli KTE60]
gi|431159370|gb|ELE59927.1| tRNA pseudouridine synthase A [Escherichia coli KTE76]
gi|431170305|gb|ELE70499.1| tRNA pseudouridine synthase A [Escherichia coli KTE80]
gi|431181703|gb|ELE81565.1| tRNA pseudouridine synthase A [Escherichia coli KTE83]
gi|431189745|gb|ELE89162.1| tRNA pseudouridine synthase A [Escherichia coli KTE87]
gi|431201009|gb|ELE99727.1| tRNA pseudouridine synthase A [Escherichia coli KTE116]
gi|431220333|gb|ELF17713.1| tRNA pseudouridine synthase A [Escherichia coli KTE143]
gi|431263251|gb|ELF55240.1| tRNA pseudouridine synthase A [Escherichia coli KTE9]
gi|431296772|gb|ELF86483.1| tRNA pseudouridine synthase A [Escherichia coli KTE29]
gi|431314077|gb|ELG02030.1| tRNA pseudouridine synthase A [Escherichia coli KTE50]
gi|431318023|gb|ELG05792.1| tRNA pseudouridine synthase A [Escherichia coli KTE54]
gi|431339197|gb|ELG26259.1| tRNA pseudouridine synthase A [Escherichia coli KTE78]
gi|431343358|gb|ELG30322.1| tRNA pseudouridine synthase A [Escherichia coli KTE79]
gi|431364296|gb|ELG50840.1| tRNA pseudouridine synthase A [Escherichia coli KTE115]
gi|431376307|gb|ELG61630.1| tRNA pseudouridine synthase A [Escherichia coli KTE135]
gi|431385655|gb|ELG69642.1| tRNA pseudouridine synthase A [Escherichia coli KTE136]
gi|431388760|gb|ELG72482.1| tRNA pseudouridine synthase A [Escherichia coli KTE140]
gi|431394174|gb|ELG77710.1| tRNA pseudouridine synthase A [Escherichia coli KTE141]
gi|431399626|gb|ELG83025.1| tRNA pseudouridine synthase A [Escherichia coli KTE144]
gi|431404953|gb|ELG88199.1| tRNA pseudouridine synthase A [Escherichia coli KTE146]
gi|431410269|gb|ELG93431.1| tRNA pseudouridine synthase A [Escherichia coli KTE147]
gi|431416298|gb|ELG98785.1| tRNA pseudouridine synthase A [Escherichia coli KTE158]
gi|431439798|gb|ELH21131.1| tRNA pseudouridine synthase A [Escherichia coli KTE190]
gi|431473812|gb|ELH53644.1| tRNA pseudouridine synthase A [Escherichia coli KTE202]
gi|431488551|gb|ELH68183.1| tRNA pseudouridine synthase A [Escherichia coli KTE209]
gi|431505100|gb|ELH83722.1| tRNA pseudouridine synthase A [Escherichia coli KTE218]
gi|431508625|gb|ELH86897.1| tRNA pseudouridine synthase A [Escherichia coli KTE223]
gi|431530870|gb|ELI07546.1| tRNA pseudouridine synthase A [Escherichia coli KTE105]
gi|431569089|gb|ELI42051.1| tRNA pseudouridine synthase A [Escherichia coli KTE124]
gi|431569998|gb|ELI42927.1| tRNA pseudouridine synthase A [Escherichia coli KTE122]
gi|431581101|gb|ELI53555.1| tRNA pseudouridine synthase A [Escherichia coli KTE125]
gi|431583703|gb|ELI55698.1| tRNA pseudouridine synthase A [Escherichia coli KTE128]
gi|431604506|gb|ELI73915.1| tRNA pseudouridine synthase A [Escherichia coli KTE137]
gi|431610026|gb|ELI79331.1| tRNA pseudouridine synthase A [Escherichia coli KTE138]
gi|431634012|gb|ELJ02274.1| tRNA pseudouridine synthase A [Escherichia coli KTE153]
gi|431644569|gb|ELJ12230.1| tRNA pseudouridine synthase A [Escherichia coli KTE160]
gi|431645683|gb|ELJ13227.1| tRNA pseudouridine synthase A [Escherichia coli KTE163]
gi|431656226|gb|ELJ23247.1| tRNA pseudouridine synthase A [Escherichia coli KTE166]
gi|431659569|gb|ELJ26461.1| tRNA pseudouridine synthase A [Escherichia coli KTE167]
gi|431670574|gb|ELJ36927.1| tRNA pseudouridine synthase A [Escherichia coli KTE174]
gi|431677595|gb|ELJ43670.1| tRNA pseudouridine synthase A [Escherichia coli KTE177]
gi|431700822|gb|ELJ65750.1| tRNA pseudouridine synthase A [Escherichia coli KTE82]
gi|431720941|gb|ELJ84943.1| tRNA pseudouridine synthase A [Escherichia coli KTE95]
gi|431729774|gb|ELJ93393.1| tRNA pseudouridine synthase A [Escherichia coli KTE97]
gi|431734250|gb|ELJ97651.1| tRNA pseudouridine synthase A [Escherichia coli KTE99]
gi|441710700|emb|CCQ08832.1| tRNA pseudouridine synthase A [Escherichia coli Nissle 1917]
gi|443422901|gb|AGC87805.1| tRNA pseudouridine synthase A [Escherichia coli APEC O78]
gi|444538461|gb|ELV18327.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0814]
gi|444539761|gb|ELV19470.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 09BKT078844]
gi|444547559|gb|ELV26141.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0815]
gi|444557418|gb|ELV34760.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0839]
gi|444558480|gb|ELV35763.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0816]
gi|444563688|gb|ELV40677.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0848]
gi|444573248|gb|ELV49633.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1753]
gi|444577595|gb|ELV53715.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1775]
gi|444579462|gb|ELV55453.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1793]
gi|444593368|gb|ELV68587.1| tRNA pseudouridine(38-40) synthase [Escherichia coli ATCC 700728]
gi|444593553|gb|ELV68762.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA11]
gi|444595677|gb|ELV70774.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1805]
gi|444607089|gb|ELV81681.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA13]
gi|444607546|gb|ELV82122.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA19]
gi|444615898|gb|ELV90081.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA2]
gi|444623805|gb|ELV97719.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA47]
gi|444624715|gb|ELV98597.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA48]
gi|444629729|gb|ELW03406.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA8]
gi|444638615|gb|ELW11947.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 7.1982]
gi|444641723|gb|ELW14946.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1781]
gi|444645148|gb|ELW18222.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.1762]
gi|444654553|gb|ELW27213.1| tRNA pseudouridine(38-40) synthase [Escherichia coli PA35]
gi|444659871|gb|ELW32258.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 3.4880]
gi|444664120|gb|ELW36310.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 95.0083]
gi|444670097|gb|ELW42031.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 99.0670]
Length = 270
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|83645231|ref|YP_433666.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396]
gi|83633274|gb|ABC29241.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396]
Length = 283
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 136/315 (43%), Gaps = 60/315 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + + Y G+R+ G Q Q +V +E A K PVS+ + RTDAGVHA + V
Sbjct: 23 RVALVLGYDGSRYHGWQAQNSGVPSVQAEVESALAKVADHPVSVVCAGRTDAGVHAVNQV 82
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H + + + P+ ++ VNHFL + D+ V+ VP DFHAR+ A R
Sbjct: 83 VHFETKALRS--------PYSWAM---GVNHFLPA--DVSVSWAGAVPEDFHARYTATSR 129
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
+Y Y I + P + W+ LD+ +M A L+G +DFS+FR S CQ+ SP
Sbjct: 130 SYRYVIYNHPIRPAWLNNSVTWNY-RPLDVESMSAAGAHLIGENDFSAFRGSDCQSKSPF 188
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
R L L VS + +
Sbjct: 189 RNLTRLEVSRFGDMVV----------------------------------------IEVE 208
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +FL+H VR I G L AVGTG+ V +L +K + A AP GL L V Y P
Sbjct: 209 ANAFLHHMVRNISGTLMAVGTGKKPSDWVADVLASKKRSKAGVTAPPFGLYLTSVTY--P 266
Query: 358 EDDQTDAAESLETCP 372
E T A SL P
Sbjct: 267 E---TFAIPSLRKGP 278
>gi|366158505|ref|ZP_09458367.1| tRNA pseudouridine synthase A [Escherichia sp. TW09308]
gi|432372999|ref|ZP_19616038.1| tRNA pseudouridine synthase A [Escherichia coli KTE11]
gi|430895421|gb|ELC17684.1| tRNA pseudouridine synthase A [Escherichia coli KTE11]
Length = 270
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 140/315 (44%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+R+ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H + + K + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVHFETTALRK-----------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFVKY----DLPE 358
L V Y DLP+
Sbjct: 246 YLVAVDYPDRFDLPK 260
>gi|422780763|ref|ZP_16833548.1| tRNA pseudouridine synthase A [Escherichia coli TW10509]
gi|323977481|gb|EGB72567.1| tRNA pseudouridine synthase A [Escherichia coli TW10509]
Length = 270
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 142/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFVKY----DLPE 358
L V Y DLP+
Sbjct: 246 YLVAVDYPDRFDLPK 260
>gi|373850884|ref|ZP_09593685.1| tRNA pseudouridine synthase A [Opitutaceae bacterium TAV5]
gi|372477049|gb|EHP37058.1| tRNA pseudouridine synthase A [Opitutaceae bacterium TAV5]
Length = 286
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 128/301 (42%), Gaps = 53/301 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R+ V Y GT FSG Q Q + + LE +G PV I S RTDAGVHA +
Sbjct: 19 LRRWKCTVSYDGTGFSGWQSQPDGNAIQDHLERRLALILGAPVRIHGSGRTDAGVHARAQ 78
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D I P +++ + R EG I VTD + P FHARF A
Sbjct: 79 VFHFDA--IWWHGPEKLV-----AAFRAGSGADRLPEG-IQVTDTQVAPPTFHARFSATG 130
Query: 177 RTYFYRILSG--PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ Y Y I +G +P F + W V ELD AMQ+A + LVG HDF +F ASG +
Sbjct: 131 KRYTYEIFNGGFADP---FTQAYCWSVPRELDRAAMQDAAERLVGRHDFRAFSASGGEER 187
Query: 235 -SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +R L L V E + HR
Sbjct: 188 ESTVRELRVLEVKE---------------------------------------RGHRRLR 208
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ A+A FLY VR + G L G G+L+ D+ +L T AP GL L V
Sbjct: 209 ITAQADGFLYKMVRSLAGALVHAGQGKLSPDDIAALLAGGRRTRQIETAPPRGLFLDKVF 268
Query: 354 Y 354
Y
Sbjct: 269 Y 269
>gi|377813419|ref|YP_005042668.1| tRNA pseudouridine synthase A [Burkholderia sp. YI23]
gi|357938223|gb|AET91781.1| tRNA pseudouridine synthase A [Burkholderia sp. YI23]
Length = 267
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 132/296 (44%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + ++Y G F G Q Q + +TV LE A KF P++ ++ RTD GVH V
Sbjct: 2 RIALGIQYDGAAFCGWQSQPHGKTVQNELEHALAKFAQTPLATVVAGRTDTGVHGIGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + L + S V R N FL + V + +P DFHARF A ERT
Sbjct: 62 HFDTD----------LDRAEFSWV-RGTNAFLPDT--VAVQWAKPMPDDFHARFAAFERT 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
YFY + P + K W V LD+ AM+E+ LVG HDFSSFRA+ CQ+ +P++
Sbjct: 109 YFYVLYVNPVRSPMLAKRAGW-VHTPLDVDAMRESVACLVGEHDFSSFRAADCQSKTPVK 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
HV ++ IR++ RA
Sbjct: 168 -----HVYQI-----------------------------------DIREQGDFIHFRFRA 187
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR ++G A+G G S + +L A+ AA+P GL L V Y
Sbjct: 188 NAFLHHMVRNLMGCFVAIGRGRHPASWMAEVLAARDRRAAAPTFMPDGLYLAGVGY 243
>gi|387507703|ref|YP_006159959.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|419126726|ref|ZP_13671611.1| tRNA pseudouridine synthase A [Escherichia coli DEC5C]
gi|419132344|ref|ZP_13677181.1| tRNA pseudouridine synthase A [Escherichia coli DEC5D]
gi|209764794|gb|ACI80709.1| pseudouridylate synthase I [Escherichia coli]
gi|374359697|gb|AEZ41404.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|377974838|gb|EHV38163.1| tRNA pseudouridine synthase A [Escherichia coli DEC5C]
gi|377975307|gb|EHV38628.1| tRNA pseudouridine synthase A [Escherichia coli DEC5D]
Length = 270
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNYRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|148556941|ref|YP_001264523.1| tRNA pseudouridine synthase A [Sphingomonas wittichii RW1]
gi|166229840|sp|A5VDL9.1|TRUA_SPHWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|148502131|gb|ABQ70385.1| tRNA pseudouridine synthase A [Sphingomonas wittichii RW1]
Length = 254
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 122/266 (45%), Gaps = 53/266 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VE+ G F G Q+Q + +V +EEA G+ I + RTDA VH +
Sbjct: 1 MTRFRLTVEFDGRPFMGWQRQAHGPSVQQAIEEAITAVTGERAVIHAAGRTDARVHGRAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
H D+ + P ++ A+N L+ + + V D+HARF
Sbjct: 61 TAHADIAK-----------PITPFRLKEALNARLRP-APVAILACEPVAGDWHARFSCVG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL+ F+ AW V +LD +AM A + LVG HDF++FR++ CQA SP
Sbjct: 109 RRYVYRIVNRRAPLT-FDAGLAWQVAADLDDQAMHAAAQCLVGRHDFTTFRSAHCQAESP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V R+ E+ A
Sbjct: 168 VKTLDRLDV----------------------------------------RRSGELIEIEA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELT 322
ARSFL+HQVR +VG L VG G T
Sbjct: 188 AARSFLHHQVRSMVGCLALVGRGRWT 213
>gi|194429433|ref|ZP_03061956.1| tRNA pseudouridine synthase A [Escherichia coli B171]
gi|419317597|ref|ZP_13859400.1| tRNA pseudouridine synthase A [Escherichia coli DEC12A]
gi|419323771|ref|ZP_13865464.1| tRNA pseudouridine synthase A [Escherichia coli DEC12B]
gi|419329740|ref|ZP_13871344.1| tRNA pseudouridine synthase A [Escherichia coli DEC12C]
gi|419335299|ref|ZP_13876832.1| tRNA pseudouridine synthase A [Escherichia coli DEC12D]
gi|420392046|ref|ZP_14891299.1| tRNA pseudouridine synthase A [Escherichia coli EPEC C342-62]
gi|194412494|gb|EDX28793.1| tRNA pseudouridine synthase A [Escherichia coli B171]
gi|195183057|dbj|BAG66617.1| pseudouridylate synthase I [Escherichia coli O111:H-]
gi|378164847|gb|EHX25788.1| tRNA pseudouridine synthase A [Escherichia coli DEC12B]
gi|378169180|gb|EHX30080.1| tRNA pseudouridine synthase A [Escherichia coli DEC12A]
gi|378170056|gb|EHX30942.1| tRNA pseudouridine synthase A [Escherichia coli DEC12C]
gi|378182378|gb|EHX43031.1| tRNA pseudouridine synthase A [Escherichia coli DEC12D]
gi|391312727|gb|EIQ70335.1| tRNA pseudouridine synthase A [Escherichia coli EPEC C342-62]
Length = 270
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPECWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|157161806|ref|YP_001459124.1| tRNA pseudouridine synthase A [Escherichia coli HS]
gi|170019373|ref|YP_001724327.1| tRNA pseudouridine synthase A [Escherichia coli ATCC 8739]
gi|188492228|ref|ZP_02999498.1| tRNA pseudouridine synthase A [Escherichia coli 53638]
gi|194436017|ref|ZP_03068119.1| tRNA pseudouridine synthase A [Escherichia coli 101-1]
gi|251785678|ref|YP_002999982.1| tRNA pseudouridine synthase I [Escherichia coli BL21(DE3)]
gi|253772758|ref|YP_003035589.1| tRNA pseudouridine synthase A [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162327|ref|YP_003045435.1| tRNA pseudouridine synthase A [Escherichia coli B str. REL606]
gi|254289088|ref|YP_003054836.1| tRNA pseudouridine synthase A [Escherichia coli BL21(DE3)]
gi|300948533|ref|ZP_07162627.1| tRNA pseudouridine synthase A [Escherichia coli MS 116-1]
gi|300956414|ref|ZP_07168705.1| tRNA pseudouridine synthase A [Escherichia coli MS 175-1]
gi|301023565|ref|ZP_07187329.1| tRNA pseudouridine synthase A [Escherichia coli MS 196-1]
gi|301647579|ref|ZP_07247376.1| tRNA pseudouridine synthase A [Escherichia coli MS 146-1]
gi|312973422|ref|ZP_07787594.1| tRNA pseudouridine synthase A [Escherichia coli 1827-70]
gi|331642958|ref|ZP_08344093.1| tRNA pseudouridine synthase A [Escherichia coli H736]
gi|386281388|ref|ZP_10059050.1| tRNA pseudouridine synthase A [Escherichia sp. 4_1_40B]
gi|386614931|ref|YP_006134597.1| tRNA pseudouridine synthase TruA [Escherichia coli UMNK88]
gi|386705578|ref|YP_006169425.1| Pseudouridylate synthase [Escherichia coli P12b]
gi|387612894|ref|YP_006116010.1| tRNA pseudouridine synthase A [Escherichia coli ETEC H10407]
gi|404375670|ref|ZP_10980853.1| tRNA pseudouridine synthase A [Escherichia sp. 1_1_43]
gi|415778384|ref|ZP_11489430.1| tRNA pseudouridine synthase A [Escherichia coli 3431]
gi|417259735|ref|ZP_12047258.1| tRNA pseudouridine synthase A [Escherichia coli 2.3916]
gi|417272779|ref|ZP_12060128.1| tRNA pseudouridine synthase A [Escherichia coli 2.4168]
gi|417277556|ref|ZP_12064879.1| tRNA pseudouridine synthase A [Escherichia coli 3.2303]
gi|417290951|ref|ZP_12078232.1| tRNA pseudouridine synthase A [Escherichia coli B41]
gi|417597633|ref|ZP_12248273.1| tRNA pseudouridine synthase A [Escherichia coli 3030-1]
gi|417613797|ref|ZP_12264255.1| tRNA pseudouridine synthase A [Escherichia coli STEC_EH250]
gi|417618923|ref|ZP_12269337.1| tRNA pseudouridine synthase A [Escherichia coli G58-1]
gi|417635258|ref|ZP_12285471.1| tRNA pseudouridine synthase A [Escherichia coli STEC_S1191]
gi|418303717|ref|ZP_12915511.1| tRNA pseudouridine synthase A [Escherichia coli UMNF18]
gi|419143266|ref|ZP_13688004.1| tRNA pseudouridine synthase A [Escherichia coli DEC6A]
gi|419149256|ref|ZP_13693909.1| tRNA pseudouridine synthase A [Escherichia coli DEC6B]
gi|419154722|ref|ZP_13699285.1| tRNA pseudouridine synthase A [Escherichia coli DEC6C]
gi|419160006|ref|ZP_13704511.1| tRNA pseudouridine synthase A [Escherichia coli DEC6D]
gi|419165130|ref|ZP_13709587.1| tRNA pseudouridine synthase A [Escherichia coli DEC6E]
gi|419810050|ref|ZP_14334933.1| tRNA pseudouridine synthase A [Escherichia coli O32:H37 str. P4]
gi|419938974|ref|ZP_14455779.1| tRNA pseudouridine synthase A [Escherichia coli 75]
gi|421774508|ref|ZP_16211120.1| tRNA pseudouridine synthase A [Escherichia coli AD30]
gi|422766934|ref|ZP_16820661.1| tRNA pseudouridine synthase A [Escherichia coli E1520]
gi|422771833|ref|ZP_16825522.1| tRNA pseudouridine synthase A [Escherichia coli E482]
gi|422786939|ref|ZP_16839678.1| tRNA pseudouridine synthase A [Escherichia coli H489]
gi|422790423|ref|ZP_16843127.1| tRNA pseudouridine synthase A [Escherichia coli TA007]
gi|422819502|ref|ZP_16867713.1| tRNA pseudouridine synthase A [Escherichia coli M919]
gi|423704296|ref|ZP_17678721.1| tRNA pseudouridine synthase A [Escherichia coli H730]
gi|425115738|ref|ZP_18517539.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 8.0566]
gi|425120460|ref|ZP_18522159.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 8.0569]
gi|425273489|ref|ZP_18664901.1| tRNA pseudouridine synthase A [Escherichia coli TW15901]
gi|425284033|ref|ZP_18675072.1| tRNA pseudouridine synthase A [Escherichia coli TW00353]
gi|425289335|ref|ZP_18680182.1| tRNA pseudouridine synthase A [Escherichia coli 3006]
gi|432370558|ref|ZP_19613644.1| tRNA pseudouridine synthase A [Escherichia coli KTE10]
gi|432417794|ref|ZP_19660398.1| tRNA pseudouridine synthase A [Escherichia coli KTE44]
gi|432486127|ref|ZP_19728042.1| tRNA pseudouridine synthase A [Escherichia coli KTE212]
gi|432527096|ref|ZP_19764189.1| tRNA pseudouridine synthase A [Escherichia coli KTE233]
gi|432564580|ref|ZP_19801161.1| tRNA pseudouridine synthase A [Escherichia coli KTE51]
gi|432576601|ref|ZP_19813061.1| tRNA pseudouridine synthase A [Escherichia coli KTE56]
gi|432627972|ref|ZP_19863948.1| tRNA pseudouridine synthase A [Escherichia coli KTE77]
gi|432661554|ref|ZP_19897198.1| tRNA pseudouridine synthase A [Escherichia coli KTE111]
gi|432671392|ref|ZP_19906921.1| tRNA pseudouridine synthase A [Escherichia coli KTE119]
gi|432686156|ref|ZP_19921453.1| tRNA pseudouridine synthase A [Escherichia coli KTE156]
gi|432692295|ref|ZP_19927523.1| tRNA pseudouridine synthase A [Escherichia coli KTE161]
gi|432705119|ref|ZP_19940219.1| tRNA pseudouridine synthase A [Escherichia coli KTE171]
gi|432737837|ref|ZP_19972595.1| tRNA pseudouridine synthase A [Escherichia coli KTE42]
gi|432875959|ref|ZP_20094119.1| tRNA pseudouridine synthase A [Escherichia coli KTE154]
gi|432955840|ref|ZP_20147718.1| tRNA pseudouridine synthase A [Escherichia coli KTE197]
gi|433048700|ref|ZP_20236053.1| tRNA pseudouridine synthase A [Escherichia coli KTE120]
gi|433174242|ref|ZP_20358767.1| tRNA pseudouridine synthase A [Escherichia coli KTE232]
gi|442592073|ref|ZP_21010053.1| tRNA pseudouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442599085|ref|ZP_21016818.1| tRNA pseudouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|166991162|sp|A8A2I7.1|TRUA_ECOHS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189030133|sp|B1IXM4.1|TRUA_ECOLC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157067486|gb|ABV06741.1| tRNA pseudouridine synthase A [Escherichia coli HS]
gi|169754301|gb|ACA77000.1| tRNA pseudouridine synthase A [Escherichia coli ATCC 8739]
gi|188487427|gb|EDU62530.1| tRNA pseudouridine synthase A [Escherichia coli 53638]
gi|194424745|gb|EDX40730.1| tRNA pseudouridine synthase A [Escherichia coli 101-1]
gi|242377951|emb|CAQ32720.1| tRNA pseudouridine synthase I [Escherichia coli BL21(DE3)]
gi|253323802|gb|ACT28404.1| tRNA pseudouridine synthase A [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974228|gb|ACT39899.1| tRNA pseudouridine synthase A [Escherichia coli B str. REL606]
gi|253978395|gb|ACT44065.1| tRNA pseudouridine synthase A [Escherichia coli BL21(DE3)]
gi|299880800|gb|EFI89011.1| tRNA pseudouridine synthase A [Escherichia coli MS 196-1]
gi|300316763|gb|EFJ66547.1| tRNA pseudouridine synthase A [Escherichia coli MS 175-1]
gi|300451943|gb|EFK15563.1| tRNA pseudouridine synthase A [Escherichia coli MS 116-1]
gi|301074269|gb|EFK89075.1| tRNA pseudouridine synthase A [Escherichia coli MS 146-1]
gi|309702630|emb|CBJ01959.1| tRNA pseudouridine synthase A [Escherichia coli ETEC H10407]
gi|310332017|gb|EFP99252.1| tRNA pseudouridine synthase A [Escherichia coli 1827-70]
gi|315615587|gb|EFU96219.1| tRNA pseudouridine synthase A [Escherichia coli 3431]
gi|323936608|gb|EGB32895.1| tRNA pseudouridine synthase A [Escherichia coli E1520]
gi|323940985|gb|EGB37172.1| tRNA pseudouridine synthase A [Escherichia coli E482]
gi|323961391|gb|EGB57002.1| tRNA pseudouridine synthase A [Escherichia coli H489]
gi|323973098|gb|EGB68291.1| tRNA pseudouridine synthase A [Escherichia coli TA007]
gi|331039756|gb|EGI11976.1| tRNA pseudouridine synthase A [Escherichia coli H736]
gi|332344100|gb|AEE57434.1| tRNA pseudouridine synthase TruA [Escherichia coli UMNK88]
gi|339415815|gb|AEJ57487.1| tRNA pseudouridine synthase A [Escherichia coli UMNF18]
gi|345353285|gb|EGW85520.1| tRNA pseudouridine synthase A [Escherichia coli 3030-1]
gi|345361991|gb|EGW94148.1| tRNA pseudouridine synthase A [Escherichia coli STEC_EH250]
gi|345375637|gb|EGX07584.1| tRNA pseudouridine synthase A [Escherichia coli G58-1]
gi|345387541|gb|EGX17363.1| tRNA pseudouridine synthase A [Escherichia coli STEC_S1191]
gi|377992378|gb|EHV55525.1| tRNA pseudouridine synthase A [Escherichia coli DEC6B]
gi|377993779|gb|EHV56910.1| tRNA pseudouridine synthase A [Escherichia coli DEC6A]
gi|377997304|gb|EHV60411.1| tRNA pseudouridine synthase A [Escherichia coli DEC6C]
gi|378007350|gb|EHV70319.1| tRNA pseudouridine synthase A [Escherichia coli DEC6D]
gi|378011212|gb|EHV74157.1| tRNA pseudouridine synthase A [Escherichia coli DEC6E]
gi|383103746|gb|AFG41255.1| Pseudouridylate synthase [Escherichia coli P12b]
gi|385157134|gb|EIF19127.1| tRNA pseudouridine synthase A [Escherichia coli O32:H37 str. P4]
gi|385536915|gb|EIF83800.1| tRNA pseudouridine synthase A [Escherichia coli M919]
gi|385706535|gb|EIG43574.1| tRNA pseudouridine synthase A [Escherichia coli H730]
gi|386121527|gb|EIG70142.1| tRNA pseudouridine synthase A [Escherichia sp. 4_1_40B]
gi|386226458|gb|EII48760.1| tRNA pseudouridine synthase A [Escherichia coli 2.3916]
gi|386236479|gb|EII68455.1| tRNA pseudouridine synthase A [Escherichia coli 2.4168]
gi|386239624|gb|EII76551.1| tRNA pseudouridine synthase A [Escherichia coli 3.2303]
gi|386253273|gb|EIJ02963.1| tRNA pseudouridine synthase A [Escherichia coli B41]
gi|388409089|gb|EIL69415.1| tRNA pseudouridine synthase A [Escherichia coli 75]
gi|404290810|gb|EJZ47712.1| tRNA pseudouridine synthase A [Escherichia sp. 1_1_43]
gi|408193271|gb|EKI18824.1| tRNA pseudouridine synthase A [Escherichia coli TW15901]
gi|408201723|gb|EKI26872.1| tRNA pseudouridine synthase A [Escherichia coli TW00353]
gi|408213571|gb|EKI38055.1| tRNA pseudouridine synthase A [Escherichia coli 3006]
gi|408460256|gb|EKJ84035.1| tRNA pseudouridine synthase A [Escherichia coli AD30]
gi|408568016|gb|EKK44058.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 8.0566]
gi|408569213|gb|EKK45218.1| tRNA pseudouridine(38-40) synthase [Escherichia coli 8.0569]
gi|430884770|gb|ELC07705.1| tRNA pseudouridine synthase A [Escherichia coli KTE10]
gi|430939038|gb|ELC59261.1| tRNA pseudouridine synthase A [Escherichia coli KTE44]
gi|431015336|gb|ELD28891.1| tRNA pseudouridine synthase A [Escherichia coli KTE212]
gi|431063355|gb|ELD72604.1| tRNA pseudouridine synthase A [Escherichia coli KTE233]
gi|431092996|gb|ELD98667.1| tRNA pseudouridine synthase A [Escherichia coli KTE51]
gi|431114636|gb|ELE18164.1| tRNA pseudouridine synthase A [Escherichia coli KTE56]
gi|431162583|gb|ELE63024.1| tRNA pseudouridine synthase A [Escherichia coli KTE77]
gi|431199291|gb|ELE98044.1| tRNA pseudouridine synthase A [Escherichia coli KTE111]
gi|431210311|gb|ELF08373.1| tRNA pseudouridine synthase A [Escherichia coli KTE119]
gi|431221938|gb|ELF19235.1| tRNA pseudouridine synthase A [Escherichia coli KTE156]
gi|431226643|gb|ELF23802.1| tRNA pseudouridine synthase A [Escherichia coli KTE161]
gi|431242605|gb|ELF37020.1| tRNA pseudouridine synthase A [Escherichia coli KTE171]
gi|431282297|gb|ELF73182.1| tRNA pseudouridine synthase A [Escherichia coli KTE42]
gi|431420231|gb|ELH02563.1| tRNA pseudouridine synthase A [Escherichia coli KTE154]
gi|431467226|gb|ELH47237.1| tRNA pseudouridine synthase A [Escherichia coli KTE197]
gi|431564471|gb|ELI37645.1| tRNA pseudouridine synthase A [Escherichia coli KTE120]
gi|431691986|gb|ELJ57431.1| tRNA pseudouridine synthase A [Escherichia coli KTE232]
gi|441608226|emb|CCP99079.1| tRNA pseudouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441652183|emb|CCQ02315.1| tRNA pseudouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 270
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 141/315 (44%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H + + K + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVHFETTALRK-----------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|381197017|ref|ZP_09904358.1| tRNA pseudouridine synthase A [Acinetobacter lwoffii WJ10621]
Length = 265
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 134/306 (43%), Gaps = 65/306 (21%)
Query: 57 IQRYLIAVEYIGTRFSGSQ-KQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+QR+ I +E+ GT + G Q +Q +V +E+ K +P+S+ + RTDAGVHA +
Sbjct: 1 MQRFAIGIEFCGTHYRGWQTQQTGVISVQETIEKVLSKIANEPISLHGAGRTDAGVHATN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG----DIMVTDVRCVPSDFHAR 171
V H D SS +R + S DI + ++ + DFHAR
Sbjct: 61 MVAHFD-----------------SSALRSERGWLMGSNSQLPKDISIQWIKAMDQDFHAR 103
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
F+AQ R Y Y + + P+ ++ K H LD+ M +A + G H+F SFRA+ C
Sbjct: 104 FKAQARRYRYVVYNHPQRPALMHKQVT-HAYYALDVAKMMQAAQKFEGTHNFESFRAAAC 162
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
Q+N P+R HVS + Q P L V I
Sbjct: 163 QSNQPVR-----HVSHC-------RLIQHGPYL-----------------VLDI------ 187
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
+A FL+H VR I+G L +G G V +E I A+ AA AP GL F
Sbjct: 188 -----QADGFLHHMVRNIMGCLLEIGQGLYEVEHIEAIFAAEDRKAAGITAPPDGLY--F 240
Query: 352 VKYDLP 357
+ D P
Sbjct: 241 IHADYP 246
>gi|422653178|ref|ZP_16715949.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330966232|gb|EGH66492.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 274
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 133/310 (42%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + K + PHD SV + R +P+ FHARF+
Sbjct: 68 VHFDTQAERSLKAWVMGANINLPHDVSV-----------------SWARVMPATFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 111 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGTHDFSAFRAGQCQA 169
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ L L V+ +H
Sbjct: 170 KSPIKQLHHLRVT-----------------------------------------RHGKMI 188
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +G GE V +L+++ A GL L V
Sbjct: 189 VIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYLVQV 248
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 249 EYRDEFPLPE 258
>gi|432608202|ref|ZP_19844386.1| tRNA pseudouridine synthase A [Escherichia coli KTE67]
gi|431137146|gb|ELE38993.1| tRNA pseudouridine synthase A [Escherichia coli KTE67]
Length = 270
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKAISQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|74312835|ref|YP_311254.1| tRNA pseudouridine synthase A [Shigella sonnei Ss046]
gi|383179294|ref|YP_005457299.1| tRNA pseudouridine synthase A [Shigella sonnei 53G]
gi|414576939|ref|ZP_11434121.1| tRNA pseudouridine synthase A [Shigella sonnei 3233-85]
gi|415844397|ref|ZP_11524139.1| tRNA pseudouridine synthase A [Shigella sonnei 53G]
gi|418266725|ref|ZP_12886206.1| tRNA pseudouridine synthase A [Shigella sonnei str. Moseley]
gi|420359402|ref|ZP_14860376.1| tRNA pseudouridine synthase A [Shigella sonnei 3226-85]
gi|420364176|ref|ZP_14865059.1| tRNA pseudouridine synthase A [Shigella sonnei 4822-66]
gi|123759585|sp|Q3YZP3.1|TRUA_SHISS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|73856312|gb|AAZ89019.1| pseudouridylate synthase I [Shigella sonnei Ss046]
gi|323168509|gb|EFZ54189.1| tRNA pseudouridine synthase A [Shigella sonnei 53G]
gi|391282083|gb|EIQ40720.1| tRNA pseudouridine synthase A [Shigella sonnei 3226-85]
gi|391284692|gb|EIQ43287.1| tRNA pseudouridine synthase A [Shigella sonnei 3233-85]
gi|391293839|gb|EIQ52098.1| tRNA pseudouridine synthase A [Shigella sonnei 4822-66]
gi|397899550|gb|EJL15924.1| tRNA pseudouridine synthase A [Shigella sonnei str. Moseley]
Length = 270
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPERWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|319952056|ref|YP_004163323.1| tRNA pseudouridine synthase a [Cellulophaga algicola DSM 14237]
gi|319420716|gb|ADV47825.1| tRNA pseudouridine synthase A [Cellulophaga algicola DSM 14237]
Length = 250
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 131/298 (43%), Gaps = 58/298 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY I Y G + G QKQ N TV GVLE+A K + + + + RTDAGVHA
Sbjct: 1 MRYFIRFSYFGKHYHGWQKQPNAVTVQGVLEDALSKLLANEIILMGAGRTDAGVHAKELY 60
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D E I P+ + V R +N FL DI + DV VP D HARF A R
Sbjct: 61 AHFDFEEI----------PNKENFVFR-LNAFLPK--DIAILDVFQVPEDAHARFNAVAR 107
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY Y I+ P F + A + LD+ M EA +V + DF F S N+ +
Sbjct: 108 TYEYWIVQQKNP---FLTNHAHLIKYPLDINKMNEAAQVFLSHIDFECFSKS----NTAV 160
Query: 238 RTLD-ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
T + ++ +E T G VF I
Sbjct: 161 NTFNCDVKYAEWKVT--------------------------DGILVFTI----------- 183
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A FL + VR IVG L VG G++ +S+V+ ILK+K + A APA GL L V Y
Sbjct: 184 TADRFLRNMVRAIVGTLLEVGLGKIDISNVKAILKSKDRSKAGASAPAKGLYLTSVLY 241
>gi|255321215|ref|ZP_05362381.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SK82]
gi|262380100|ref|ZP_06073255.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SH164]
gi|255301769|gb|EET81020.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SK82]
gi|262298294|gb|EEY86208.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SH164]
Length = 265
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 137/304 (45%), Gaps = 59/304 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQ-KQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+QRY + +E+ G R+ G Q +Q +V LE K + + + + RTDAGVHA +
Sbjct: 1 MQRYAVGIEFCGIRYRGWQTQQAGVPSVQETLERVLSKIADEKIILHGAGRTDAGVHATN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D I + G ++ +S + + +LQ G+ DFHARF+A
Sbjct: 61 MVAHFDTHAIRTER-GWMMGS-NSQLPKDIALQWLQPMGE-----------DFHARFKAC 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y Y I + P ++ K HV ++LD+ M++A K G H+F SFRA+ CQ+N
Sbjct: 108 ARRYRYVIYNAPYRPALLHKQVT-HVYQQLDIEKMKKAAKKFRGVHNFESFRAAACQSNQ 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIR +V LF +H Y V+
Sbjct: 167 PIR--------DVTHCELF---------------------------------EHGRYLVL 185
Query: 296 -ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+A FL+H VR IVG L VG G + ++ I A+ AA APA GL F++
Sbjct: 186 DIQANGFLHHMVRNIVGCLLEVGQGMYDIGHIDSIFAAEDRRAAGMTAPADGLY--FIQA 243
Query: 355 DLPE 358
PE
Sbjct: 244 YYPE 247
>gi|145588955|ref|YP_001155552.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|226708658|sp|A4SWX4.1|TRUA_POLSQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|145047361|gb|ABP33988.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 275
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 144/312 (46%), Gaps = 69/312 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQ-----PVSISLSSRTDAGVHA 113
R + ++Y G+ ++G Q QL+ T+ LE+A FIG+ PV + RTD GVHA
Sbjct: 2 RIALGLQYDGSPYAGWQTQLHQPTIQDELEKALTAFIGEEAKAFPVHTITAGRTDTGVHA 61
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
V H D + D S VR VN FL I+V + VP +F ARF
Sbjct: 62 LGQVVHFDTN----------VGREDFSWVR-GVNTFLPK--SIVVNWAKEVPEEFSARFS 108
Query: 174 AQERTYFYRILSGP--EPLSVFEKDRAWHVT----EELDLRAMQEACKVLVGCHDFSSFR 227
A ERTY Y + +GP P+ RA ++ + LD+ AM+++ + L+G HDFSSFR
Sbjct: 109 AYERTYIYALHAGPCRSPIV---NARAGYLMLPPDQFLDVEAMKKSAECLIGEHDFSSFR 165
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
+S CQ+ +P++T+ + + I+Q+ V I
Sbjct: 166 SSECQSKTPVKTIYAIDI-----------ISQEPWVYFRI-------------------- 194
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
R +FL+H +R IVG +G G + +L AK A+P A GL
Sbjct: 195 ---------RGNAFLHHMIRNIVGCFLQIGQGRQQSGWMAEVLTAKNRQIAAPTFMADGL 245
Query: 348 SLGFVKYDLPED 359
L +KY PE+
Sbjct: 246 YLAKIKY--PEE 255
>gi|258540648|ref|YP_003175147.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus Lc 705]
gi|385836286|ref|YP_005874061.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus ATCC 8530]
gi|257152324|emb|CAR91296.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus Lc 705]
gi|355395778|gb|AER65208.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus ATCC 8530]
Length = 247
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 134/299 (44%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ Y + + Y GT F+G Q Q RTV GVL++A K GQPV + S RTD+GVHA
Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V D PG + P +S + RA+N + DI + V +DFHAR+ A+
Sbjct: 61 QVISFDY-------PGNI--PAESML--RAMNSLMPL--DIEILKAEIVAADFHARYSAK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ G + F + H +LD++ ++ A K LVG HDF+SF ASG
Sbjct: 108 GKRYRYRVARGYYT-NPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKD 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E V E +T + + N
Sbjct: 167 KVRTIYEATVEEDPAT--------NELIFEFYGN-------------------------- 192
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR++V +G G V D +R+ + K A APA GL L V Y
Sbjct: 193 ----GFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPASGLYLKEVYY 247
>gi|432602872|ref|ZP_19839116.1| tRNA pseudouridine synthase A [Escherichia coli KTE66]
gi|431141446|gb|ELE43211.1| tRNA pseudouridine synthase A [Escherichia coli KTE66]
Length = 270
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALTQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|391228875|ref|ZP_10265081.1| pseudouridylate synthase I [Opitutaceae bacterium TAV1]
gi|391218536|gb|EIP96956.1| pseudouridylate synthase I [Opitutaceae bacterium TAV1]
Length = 291
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 128/301 (42%), Gaps = 53/301 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R+ V Y GT FSG Q Q + + LE +G PV I S RTDAGVHA +
Sbjct: 18 LRRWKCTVAYDGTGFSGWQSQPDGNAIQDHLERRLALILGAPVRIHGSGRTDAGVHARAQ 77
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D I P +++ + R EG I VTD + P FHARF A
Sbjct: 78 VFHFDA--IWGHGPQKLV-----AAFRAGSGADRLPEG-IQVTDTQVAPPTFHARFSATG 129
Query: 177 RTYFYRILSG--PEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 234
+ Y Y I +G +P F + W V ELD AMQ+A + LVG HDF +F ASG +
Sbjct: 130 KRYTYEIFNGGFADP---FTQAYCWSVPRELDRAAMQDAAERLVGRHDFRAFSASGGEER 186
Query: 235 -SPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
S +R L L V E + HR
Sbjct: 187 ESTVRELRVLEVKE---------------------------------------RGHRRLR 207
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
+ A+A FLY VR + G L G G+L+ D+ +L T AP GL L V
Sbjct: 208 ITAQADGFLYKMVRSLAGALVHAGQGKLSPDDIAALLAGGRRTRQIETAPPRGLFLDKVF 267
Query: 354 Y 354
Y
Sbjct: 268 Y 268
>gi|91974561|ref|YP_567220.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB5]
gi|123749504|sp|Q13F20.1|TRUA_RHOPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91681017|gb|ABE37319.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB5]
Length = 245
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 136/298 (45%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q Q +V G LE A G+ V + + RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPVLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + P + +R A+N ++ + V VP F ARF A
Sbjct: 61 VAHLDIAK-----------PFRADRLRDALNAHVRPY-PVAVLSTEIVPDSFEARFSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L+ E + W V + LD AM A +VL+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRIVNRRSNLA-LEIGKVWRVPKPLDTDAMHRAAQVLIGKHDFTTFRDTECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD L V G V ++I
Sbjct: 168 EKTLDVLDVVR------------------------------SGDCV----------DIIT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARS+L+ QVR +VG L VG G + D+ L A+ +A P+AP GL L V Y
Sbjct: 188 SARSYLHSQVRSMVGSLVWVGEGRWSADDLAAALAARRRSACGPVAPPDGLYLVKVDY 245
>gi|395212404|ref|ZP_10399778.1| tRNA pseudouridine synthase A [Pontibacter sp. BAB1700]
gi|394457216|gb|EJF11397.1| tRNA pseudouridine synthase A [Pontibacter sp. BAB1700]
Length = 255
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 134/297 (45%), Gaps = 58/297 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + + Y GTRF G Q Q N +V VLE+ K + QP+S + S RTD GVHA+
Sbjct: 2 RYFLEIAYDGTRFHGWQTQPNALSVQEVLEDCLSKVLRQPISTTGSGRTDTGVHASQQFA 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H DV + E+ P H +V R N L DI+ ++ V + HARF A ERT
Sbjct: 62 HFDVAQ-------ELNPEH---MVYR-FNRLLPD--DIVAKNLYLVTDEAHARFDAFERT 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSF-RASGCQANSPI 237
Y Y I P F + A ++ +D+ M EA VL+ DF++F + G
Sbjct: 109 YHYHITLAKNP---FTRYYATYLPRSVDVEQMNEAATVLLRYEDFTTFSKVKG------- 158
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
D H + A++ G VF I R
Sbjct: 159 ---DTKHYRCNIYEAVWRQ--------------------QGDELVFTI-----------R 184
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A FL VRL+VG L VG G+LTV+D ERI+ + + AS AP+ GL L V Y
Sbjct: 185 ANRFLRGMVRLVVGTLLDVGRGKLTVTDFERIVAGQDRSKASGAAPSEGLYLAKVTY 241
>gi|199598865|ref|ZP_03212276.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus HN001]
gi|418072310|ref|ZP_12709582.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus R0011]
gi|421770039|ref|ZP_16206742.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus LRHMDP2]
gi|421773294|ref|ZP_16209941.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus LRHMDP3]
gi|199590277|gb|EDY98372.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus HN001]
gi|357537561|gb|EHJ21585.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus R0011]
gi|411182200|gb|EKS49353.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus LRHMDP3]
gi|411183086|gb|EKS50227.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus LRHMDP2]
Length = 247
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 133/299 (44%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ Y + + Y GT F+G Q Q RTV GVL++A K GQPV + S RTD+GVHA
Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V D PG + P +S + RA+N + DI + V +DFHAR+ A+
Sbjct: 61 QVISFDY-------PGNI--PAESML--RAMNSLMPL--DIEILKAEIVAADFHARYSAK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ G + F + H +LD++ ++ A K LVG HDF+SF ASG
Sbjct: 108 GKRYRYRVARGYYT-NPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKD 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E V E + D + N
Sbjct: 167 KVRTIYEATVEEDPAA--------DELIFEFYGN-------------------------- 192
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR++V +G G V D +R+ + K A APA GL L V Y
Sbjct: 193 ----GFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPASGLYLKEVYY 247
>gi|16130253|ref|NP_416821.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr.
MG1655]
gi|170081934|ref|YP_001731254.1| tRNA pseudouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|238901493|ref|YP_002927289.1| tRNA pseudouridine synthase A [Escherichia coli BW2952]
gi|386594899|ref|YP_006091299.1| tRNA pseudouridine synthase A [Escherichia coli DH1]
gi|387622029|ref|YP_006129657.1| tRNA pseudouridine synthase A [Escherichia coli DH1]
gi|388478368|ref|YP_490560.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr.
W3110]
gi|417945237|ref|ZP_12588472.1| tRNA pseudouridine synthase A [Escherichia coli XH140A]
gi|417975368|ref|ZP_12616167.1| tRNA pseudouridine synthase A [Escherichia coli XH001]
gi|418957307|ref|ZP_13509231.1| pseudouridylate synthase I [Escherichia coli J53]
gi|450246078|ref|ZP_21900819.1| tRNA pseudouridine synthase A [Escherichia coli S17]
gi|123176|sp|P07649.1|TRUA_ECOLI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; Short=PSU-I; AltName:
Full=tRNA-uridine isomerase I
gi|229557954|sp|B1X929.1|TRUA_ECODH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|259550387|sp|C4ZVL1.1|TRUA_ECOBW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|149242461|pdb|2NQP|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
gi|149242462|pdb|2NQP|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
gi|149242463|pdb|2NQP|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
gi|149242464|pdb|2NQP|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
gi|149242466|pdb|2NR0|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
gi|149242467|pdb|2NR0|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
gi|149242468|pdb|2NR0|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
gi|149242469|pdb|2NR0|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
gi|149242475|pdb|2NRE|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
gi|41718|emb|CAA26522.1| unnamed protein product [Escherichia coli K-12]
gi|1788657|gb|AAC75378.1| tRNA pseudouridine(38-40) synthase [Escherichia coli str. K-12
substr. MG1655]
gi|1799711|dbj|BAA16175.1| pseudouridylate synthase I [Escherichia coli str. K12 substr.
W3110]
gi|169889769|gb|ACB03476.1| tRNA pseudouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|238863332|gb|ACR65330.1| pseudouridylate synthase I [Escherichia coli BW2952]
gi|260448588|gb|ACX39010.1| tRNA pseudouridine synthase A [Escherichia coli DH1]
gi|315136953|dbj|BAJ44112.1| tRNA pseudouridine synthase A [Escherichia coli DH1]
gi|342363017|gb|EGU27129.1| tRNA pseudouridine synthase A [Escherichia coli XH140A]
gi|344194933|gb|EGV49004.1| tRNA pseudouridine synthase A [Escherichia coli XH001]
gi|359332662|dbj|BAL39109.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr.
MDS42]
gi|384379954|gb|EIE37821.1| pseudouridylate synthase I [Escherichia coli J53]
gi|449319782|gb|EMD09828.1| tRNA pseudouridine synthase A [Escherichia coli S17]
Length = 270
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 141/315 (44%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS ++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H + + K + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVHFETTALRK-----------DAAWTLGVNANL--PGDIAVRWVKTVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|240143728|ref|ZP_04742329.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82]
gi|257204287|gb|EEV02572.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82]
gi|291537295|emb|CBL10407.1| pseudouridylate synthase I [Roseburia intestinalis M50/1]
gi|291539242|emb|CBL12353.1| pseudouridylate synthase I [Roseburia intestinalis XB6B4]
Length = 251
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 127/290 (43%), Gaps = 54/290 (18%)
Query: 60 YLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCH 119
Y + ++Y GTR+ G Q T+ G L++ K G V ++ S RTDAGVHA +
Sbjct: 4 YKMILQYDGTRYRGWQVLPAELTIQGKLQDVLSKMAGYQVEVTGSGRTDAGVHAKGQTAN 63
Query: 120 VDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTY 179
+ D + +N +L DI V +V+ V FH+R++A E+TY
Sbjct: 64 FHLRE-----------EWDEDKILFYLNQYLPE--DIAVCEVKRVDERFHSRYQAVEKTY 110
Query: 180 FYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRT 239
YRI +G P VFE+ + TE LD+ M++A + L G HDF SF + S +RT
Sbjct: 111 LYRIHTGKIP-EVFERRYVYDYTEPLDVNRMRKAAEYLCGTHDFKSFCGNKKMKKSTVRT 169
Query: 240 LDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARAR 299
+ + + E +P ++
Sbjct: 170 ISRIQIKE---------------------------LPG-------------EIQIYYTGN 189
Query: 300 SFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FL + VR++ G L +G G T DV IL+AK A APACGL+L
Sbjct: 190 GFLQNMVRILTGTLIEIGDGRRTPEDVSEILEAKNRERAGYTAPACGLTL 239
>gi|160881752|ref|YP_001560720.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
gi|160430418|gb|ABX43981.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
Length = 245
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 133/299 (44%), Gaps = 56/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++R L+ V Y GT + G Q Q N +T+ GVL E K + + + I +SRTDAGVHA N
Sbjct: 1 MKRVLLKVAYDGTNYCGWQVQPNAKTIEGVLNECLTKLLKEEIVIIGASRTDAGVHAYGN 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V D + R P E L A+N L DI++ V SDFH R+
Sbjct: 61 VAVFDT---NSRIPAEKLS--------YALNAHLPE--DIVIQASMEVESDFHPRYCDTR 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+TY YRI + PL + A V +LDL AM++A L+G HDF SF ++ Q
Sbjct: 108 KTYEYRIYNATFPLPT-NRRYAHFVYYDLDLEAMRKAASYLIGEHDFVSFCSANTQVKDT 166
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI- 295
RT+ ++ + +K R VI
Sbjct: 167 TRTIYDIQI-----------------------------------------EKERELIVIR 185
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+ FLY+ VR+I G L VGT + V L K AA P APA GL+L ++Y
Sbjct: 186 IKGNGFLYNMVRIIAGTLIQVGTHQWEPERVLEALTKKDRQAAGPTAPAKGLTLVEIEY 244
>gi|170718977|ref|YP_001784140.1| tRNA pseudouridine synthase A [Haemophilus somnus 2336]
gi|189030135|sp|B0USP1.1|TRUA_HAES2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|168827106|gb|ACA32477.1| tRNA pseudouridine synthase A [Haemophilus somnus 2336]
Length = 269
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 134/302 (44%), Gaps = 58/302 (19%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT + G Q+Q N +V LE A + I + RTD+GVHA V H D
Sbjct: 5 LGIEYNGTHYFGWQRQANVTSVQEKLESAVSFVANEFCQIYCAGRTDSGVHATGQVVHFD 64
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
+ I K +N L + DI V + V DFHARF A R Y Y
Sbjct: 65 TKAIRSEKAWTF-----------GLNANLPA--DIAVRWAKVVSEDFHARFSATARRYRY 111
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
I + P ++F H LD M +A + L+G HDFSSFRA+ CQ+N+P R +
Sbjct: 112 LIYNHPLRSALFPTGVT-HHHVALDHHLMHQAGQYLLGEHDFSSFRAAQCQSNTPWRNIH 170
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
LHV Q + ++ I +A +F
Sbjct: 171 HLHV-----------FRQANYIIVDI-----------------------------QANAF 190
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY----DLP 357
++H VR IVG L +G+G+ V ++ +L K T A+P A GL L VKY +LP
Sbjct: 191 VHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTAKPDGLYLVEVKYPNHFNLP 250
Query: 358 ED 359
++
Sbjct: 251 KN 252
>gi|404330482|ref|ZP_10970930.1| tRNA pseudouridine synthase A [Sporolactobacillus vineae DSM 21990
= SL153]
Length = 246
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 129/292 (44%), Gaps = 54/292 (18%)
Query: 64 VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNVCHVDV 122
V Y G+ F G Q Q RTV +E A + G+ V I+ S RTD+GVHA V H +
Sbjct: 8 VAYDGSHFFGYQVQPGRRTVQREIESALERIHHGEKVRITASGRTDSGVHAYGQVFHFES 67
Query: 123 ERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYR 182
P + P +A+N L DI + D VP+ FHAR+ + + Y YR
Sbjct: 68 PLAI---PEKNWP--------KALNSILPD--DIYIRDAEIVPAHFHARYDVKRKEYHYR 114
Query: 183 ILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLDE 242
+L+ EP +F + HVT LDL+ M EA + G HDFS F A+ + S IRT+ +
Sbjct: 115 LLTRSEP-DLFRRLYTLHVTVPLDLQKMNEAAARITGTHDFSCFCAANTEVKSKIRTVYQ 173
Query: 243 LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFL 302
L V P ++ S G FL
Sbjct: 174 LDVVP-------------RPADETLIRISGSG--------------------------FL 194
Query: 303 YHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
Y VR+I G L VGTG+L DV +I+ K AAS CGL+L V Y
Sbjct: 195 YQMVRIITGTLLDVGTGKLQPDDVSKIIAGKDRQAASKTVSPCGLTLWKVSY 246
>gi|325276985|ref|ZP_08142659.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51]
gi|324097881|gb|EGB96053.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51]
Length = 286
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 134/302 (44%), Gaps = 65/302 (21%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G R+ G Q+Q + +V LE+A K +P+++ + RTDAGVH V
Sbjct: 20 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPIAVVCAGRTDAGVHGCGQV 79
Query: 118 CHVDVERISKRKPGEVLP----PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + + + PHD SVV + +P+DFHARF+
Sbjct: 80 VHFDTRAVRDERAWTMGTNFNLPHDISVVWS-----------------QPMPADFHARFK 122
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + P + ++ W+ LD+ M +A + L+G HDFS+FRAS CQA
Sbjct: 123 ACARRYRYVIYNDPIRPAHLAEEVTWN-HRPLDVERMAQAAQSLLGTHDFSAFRASQCQA 181
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ + L V+ +H
Sbjct: 182 KSPIKHIYHLRVT-----------------------------------------RHGQMI 200
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
V+ RA +FL+H VR I GVL A+G+GE VS +L+ + A GL L V
Sbjct: 201 VLDVRATAFLHHMVRNIAGVLMAIGSGERPVSWAREVLEGRDRREGGVTAHPYGLYLVQV 260
Query: 353 KY 354
+Y
Sbjct: 261 EY 262
>gi|302060553|ref|ZP_07252094.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato K40]
Length = 284
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 132/310 (42%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVDVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + K + PHD SV + R +P+ FHARF+
Sbjct: 78 VHFDTQAERSLKAWVMGANINLPHDVSV-----------------SWARVMPATFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 121 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGTHDFSAFRAGQCQA 179
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ L L V+ +H
Sbjct: 180 KSPIKQLHHLRVT-----------------------------------------RHGKMI 198
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +G GE V +L+++ A GL L V
Sbjct: 199 VIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYLVQV 258
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 259 EYRDEFPLPE 268
>gi|116334238|ref|YP_795765.1| pseudouridylate synthase [Lactobacillus brevis ATCC 367]
gi|122269080|sp|Q03PY8.1|TRUA_LACBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116099585|gb|ABJ64734.1| Pseudouridylate synthase [Lactobacillus brevis ATCC 367]
Length = 265
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 136/303 (44%), Gaps = 59/303 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQP---VSISLSSRTDAGVHA 113
+QRY + + Y GT F+G Q+Q N RTV L + +K QP + I S RTDAGVHA
Sbjct: 1 MQRYKVTLMYDGTNFAGFQRQPNKRTVESTLTDVVNKMAKQPDPAIVIYGSGRTDAGVHA 60
Query: 114 ASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
+ V H D L P D+ +R+ +N L D+ V V V FHAR+
Sbjct: 61 LAQVVHFDF---------PFLIPADN--MRKGLNSMLPM--DMEVLKVEEVAPTFHARYD 107
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
+ Y YR+ G E + F+++ H +DL + A LVG HD++SF ASG Q
Sbjct: 108 VSGKQYQYRMDMG-EFRNPFKRNYTGHWKFPVDLAKINVALADLVGEHDYTSFVASGAQT 166
Query: 234 NSPIRTLDEL--HVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
+ +RT+ E H+ E +F NG
Sbjct: 167 RTFVRTIYEATCHIDEANHELVFEFYG------------------NG------------- 195
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
F+Y+QVR++VGVL +G+G V DV R+ + K A PA GL L
Sbjct: 196 ---------FMYNQVRIMVGVLVEIGSGTRPVHDVLRLYEVKDRKQARRTVPAAGLYLKH 246
Query: 352 VKY 354
V Y
Sbjct: 247 VYY 249
>gi|258509450|ref|YP_003172201.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus GG]
gi|385829084|ref|YP_005866856.1| tRNA pseudouridine synthase [Lactobacillus rhamnosus GG]
gi|257149377|emb|CAR88350.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus GG]
gi|259650729|dbj|BAI42891.1| tRNA pseudouridine synthase [Lactobacillus rhamnosus GG]
Length = 247
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 135/299 (45%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ Y + + Y GT F+G Q Q RTV GVL++A K GQPV + S RTD+GVHA
Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V D PG + P +S + RA+N + DI + V +DFHAR+ A+
Sbjct: 61 QVISFDY-------PGNI--PAESML--RAMNSLMPL--DIEILKAEIVAADFHARYSAK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ G + F + H +LD++ ++ A K LVG HDF+SF ASG
Sbjct: 108 GKRYRYRVARGYYT-NPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKD 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E +++ +D P VF
Sbjct: 167 KVRTIYE------------ATVEED---------------PAANELVFEF---------- 189
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR++V +G G V D +R+ + K A APA GL L V Y
Sbjct: 190 -YGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPASGLYLKEVYY 247
>gi|191639397|ref|YP_001988563.1| tRNA pseudouridine synthase A [Lactobacillus casei BL23]
gi|239630320|ref|ZP_04673351.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301067471|ref|YP_003789494.1| pseudouridylate synthase [Lactobacillus casei str. Zhang]
gi|385821158|ref|YP_005857545.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei LC2W]
gi|385824349|ref|YP_005860691.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei BD-II]
gi|417981659|ref|ZP_12622324.1| tRNA pseudouridine synthase A [Lactobacillus casei 12A]
gi|417984476|ref|ZP_12625098.1| tRNA pseudouridine synthase A [Lactobacillus casei 21/1]
gi|417987733|ref|ZP_12628287.1| tRNA pseudouridine synthase A [Lactobacillus casei 32G]
gi|417990770|ref|ZP_12631235.1| tRNA pseudouridine synthase A [Lactobacillus casei A2-362]
gi|417995392|ref|ZP_12635685.1| tRNA pseudouridine synthase A [Lactobacillus casei M36]
gi|418000114|ref|ZP_12640312.1| tRNA pseudouridine synthase A [Lactobacillus casei T71499]
gi|418006288|ref|ZP_12646247.1| tRNA pseudouridine synthase A [Lactobacillus casei UW1]
gi|418008986|ref|ZP_12648830.1| tRNA pseudouridine synthase A [Lactobacillus casei UW4]
gi|418011856|ref|ZP_12651605.1| tRNA pseudouridine synthase A [Lactobacillus casei Lc-10]
gi|418014954|ref|ZP_12654538.1| tRNA pseudouridine synthase A [Lactobacillus casei Lpc-37]
gi|238693010|sp|B3WAI6.1|TRUA_LACCB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|190713699|emb|CAQ67705.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Lactobacillus casei BL23]
gi|239527932|gb|EEQ66933.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300439878|gb|ADK19644.1| Pseudouridylate synthase [Lactobacillus casei str. Zhang]
gi|327383485|gb|AEA54961.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei LC2W]
gi|327386676|gb|AEA58150.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei BD-II]
gi|410521798|gb|EKP96756.1| tRNA pseudouridine synthase A [Lactobacillus casei 12A]
gi|410522555|gb|EKP97499.1| tRNA pseudouridine synthase A [Lactobacillus casei 32G]
gi|410525270|gb|EKQ00173.1| tRNA pseudouridine synthase A [Lactobacillus casei 21/1]
gi|410533628|gb|EKQ08296.1| tRNA pseudouridine synthase A [Lactobacillus casei A2-362]
gi|410537360|gb|EKQ11935.1| tRNA pseudouridine synthase A [Lactobacillus casei T71499]
gi|410537529|gb|EKQ12102.1| tRNA pseudouridine synthase A [Lactobacillus casei M36]
gi|410544212|gb|EKQ18548.1| tRNA pseudouridine synthase A [Lactobacillus casei UW1]
gi|410544899|gb|EKQ19209.1| tRNA pseudouridine synthase A [Lactobacillus casei UW4]
gi|410551472|gb|EKQ25530.1| tRNA pseudouridine synthase A [Lactobacillus casei Lc-10]
gi|410552476|gb|EKQ26500.1| tRNA pseudouridine synthase A [Lactobacillus casei Lpc-37]
Length = 247
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 134/299 (44%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ Y + + Y GT F+G Q Q RTV GVL++A K GQPV + S RTD+GVHA
Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V D PG + P +S + +A+N + DI + V +DFHAR+ A+
Sbjct: 61 QVISFDY-------PGNI--PAESML--KAMNSLMPL--DIEILKAEIVDADFHARYSAK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+ Y YR+ G + F + H +LD++ ++ A K LVG HDF+SF ASG
Sbjct: 108 GKRYLYRVARGYYT-NPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVD 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ E V E PV + I +F
Sbjct: 167 KVRTIYEATVRE-------------DPVTNEI--------------IFEF---------- 189
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FLY+ VR++V +G G V D +R+ K A APA GL L V Y
Sbjct: 190 -YGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPASGLYLKEVYY 247
>gi|15677859|ref|NP_275027.1| tRNA pseudouridine synthase A [Neisseria meningitidis MC58]
gi|385854079|ref|YP_005900593.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76]
gi|427828133|ref|ZP_18995151.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76]
gi|433466017|ref|ZP_20423486.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM422]
gi|433489212|ref|ZP_20446358.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis M13255]
gi|433491394|ref|ZP_20448503.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM418]
gi|433505884|ref|ZP_20462812.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 9506]
gi|433508028|ref|ZP_20464922.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 9757]
gi|433510225|ref|ZP_20467079.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 12888]
gi|433512240|ref|ZP_20469050.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 4119]
gi|25009507|sp|Q9JXI2.1|TRUA_NEIMB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|7227297|gb|AAF42357.1| tRNA pseudouridine synthase A [Neisseria meningitidis MC58]
gi|316983916|gb|EFV62895.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76]
gi|325201083|gb|ADY96538.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76]
gi|432200405|gb|ELK56498.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM422]
gi|432220142|gb|ELK75967.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis M13255]
gi|432225146|gb|ELK80899.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM418]
gi|432238408|gb|ELK93974.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 9506]
gi|432238610|gb|ELK94175.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 9757]
gi|432244469|gb|ELK99957.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 12888]
gi|432244863|gb|ELL00344.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 4119]
Length = 265
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 141/307 (45%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ + TV LE A + G+ VS +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V H D P + V R VN L EG I V R V +FH
Sbjct: 60 GVHATAQVVHFDTTAAR---------PQQAWV--RGVNAHL-PEG-IAVLHARQVAPEFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M++A +LVG DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESAPVRSPLL---KNRAGWTHLKLDIGQMRQAAALLVGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+ CQA SP++T+ +++ S L +D
Sbjct: 164 AAECQAKSPVKTIYRADLTQ-------------SSGLVRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|408480901|ref|ZP_11187120.1| tRNA pseudouridine synthase A [Pseudomonas sp. R81]
Length = 274
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 136/316 (43%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + K + PHD SV T + +P+ FHARF+
Sbjct: 68 VHFDTQAERSMKAWVMGANINLPHDVSV-----------------TWAKVMPAHFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD M EA + LVG HDFS+F
Sbjct: 111 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDAERMAEAAQHLVGVHDFSAF 162
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ + L V+ +G V I
Sbjct: 163 RAGQCQAKSPIKEVHHLRVTR-----------------------------HGKMIVLDI- 192
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +GTGE V + +L+++ A G
Sbjct: 193 ----------RAGAFLHHMVRNIAGVLMTIGTGERPVEWAKEVLESRVRRTGGVTAHPFG 242
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 243 LYLVDVEYRDEFELPE 258
>gi|168213913|ref|ZP_02639538.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
gi|170714597|gb|EDT26779.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
Length = 248
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 130/297 (43%), Gaps = 58/297 (19%)
Query: 62 IAVEYIGTRFSGSQKQ----LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
I ++Y G+++ G QKQ N TV LE+ K + + + RTD+GVHA + V
Sbjct: 6 ITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYV 65
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
+ + + + +N +L DI VT++R FHARF + +
Sbjct: 66 ANFKTNSLMTLEQ-----------IIEYINEYLPE--DIRVTEIREASERFHARFNVKSK 112
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY Y I + VF + AWHV E+LDL AM+E K L+G HDF SF + + S +
Sbjct: 113 TYEYTI-DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTL 171
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT++ + E +N+ I+
Sbjct: 172 RTINSIEFHE-------------------------------NNNILSIK---------IN 191
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL + VR+IVG L VG G++ + IL+AK AS APA GL L + Y
Sbjct: 192 GNGFLLNMVRIIVGTLVNVGLGKIEPKYINDILEAKERAKASEKAPAHGLCLLELNY 248
>gi|297521911|ref|ZP_06940297.1| tRNA pseudouridine synthase A [Escherichia coli OP50]
Length = 259
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 137/307 (44%), Gaps = 60/307 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ + + +EY G+++ G Q+Q R+V LE+A + +P+++ + RTDAGVH
Sbjct: 3 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 62
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H + + K + VN L GDI V V+ VP DFHARF A
Sbjct: 63 VVHFETTALRK-----------DAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATA 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y I + +V K H E LD M A + L+G +DF+SFRA CQ+ +P
Sbjct: 110 RRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI- 295
R + ++V+ +H Y V+
Sbjct: 169 WRNVMHINVT-----------------------------------------RHGPYVVVD 187
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV--- 352
+A +F++H VR IVG L VG S + +L AK T A+ A A GL L V
Sbjct: 188 IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 247
Query: 353 -KYDLPE 358
+YDLP+
Sbjct: 248 DRYDLPK 254
>gi|258622013|ref|ZP_05717042.1| tRNA pseudouridine synthase A [Vibrio mimicus VM573]
gi|424808088|ref|ZP_18233490.1| tRNA pseudouridine synthase A [Vibrio mimicus SX-4]
gi|258585766|gb|EEW10486.1| tRNA pseudouridine synthase A [Vibrio mimicus VM573]
gi|342324625|gb|EGU20406.1| tRNA pseudouridine synthase A [Vibrio mimicus SX-4]
Length = 264
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 129/300 (43%), Gaps = 58/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT + G Q+Q ++V LE+A K PV + + RTDAGVH V
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + +V + D+ V VP DFHARF A R
Sbjct: 62 HFDTTA-------------ERQMVAWTMGANANLPKDVAVRWATAVPDDFHARFSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + + + H ELD+ MQ+A + L+G +DF+SFRA CQ+ SP R
Sbjct: 109 YRYVIYNHVYRPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-AR 297
+ L+V+ +H Y VI +
Sbjct: 168 NIMHLNVT-----------------------------------------RHGRYVVIDIK 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +F++H VR I G L AVG GE ++ +L+ K T A+ A A GL L V+ D P
Sbjct: 187 ANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL--VEVDYP 244
>gi|195978825|ref|YP_002124069.1| tRNA pseudouridine synthase A [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|238689837|sp|B4U545.1|TRUA_STREM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|195975530|gb|ACG63056.1| tRNA pseudouridine synthase A TruA [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 249
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 132/300 (44%), Gaps = 53/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIG-QPVSISLSSRTDAGVHAAS 115
+ RY + Y GT FSG Q+Q RTV +E+ K G Q + I + TDAGVHA
Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGITDAGVHAYG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D+E+ KR P ++ D+ Q+ DI V + DFHAR+
Sbjct: 61 QVIHFDLEQ--KRDPEKLRFALDT-----------QTPDDIDVISLEIAADDFHARYHKH 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY + + G P + + A H LD+ MQ A K LVG HDF+ F A+G +
Sbjct: 108 FKTYEFLVDIG-RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKN 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+RT+ TA +++ QD P G VF
Sbjct: 167 KVRTI----------TA--ATLTQD---------------PKTGFLVFTFS--------- 190
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G L + + +L++K A P A GL L + Y+
Sbjct: 191 --GNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGNGLYLKEIIYE 248
>gi|422649082|ref|ZP_16712194.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330962608|gb|EGH62868.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 274
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 134/307 (43%), Gaps = 59/307 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + + S+ + + DI V+ R +P+ FHARF+A R
Sbjct: 68 VHFDTQA-------------ERSLKAWVMGANINLPHDISVSWARVMPATFHARFKAIAR 114
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y I + + ++ W+ LD+ M +A LVG HDFS+FRA CQA SP+
Sbjct: 115 RYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAAHLVGTHDFSAFRAGQCQAKSPV 173
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-A 296
+ L L V+ +H VI
Sbjct: 174 KQLHHLRVT-----------------------------------------RHGKMIVIDV 192
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY-- 354
RA +FL+H VR I GVL +G GE V +L++K A GL L V+Y
Sbjct: 193 RANAFLHHMVRNIAGVLMTIGAGERPVEWAREVLESKVRRTGGVTAHPYGLYLVQVEYRD 252
Query: 355 DLPEDDQ 361
+ P D+
Sbjct: 253 EFPLPDR 259
>gi|257088682|ref|ZP_05583043.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188]
gi|397698764|ref|YP_006536552.1| tRNA pseudouridine synthase A [Enterococcus faecalis D32]
gi|422687608|ref|ZP_16745784.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630]
gi|422733263|ref|ZP_16789584.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645]
gi|256997494|gb|EEU84014.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188]
gi|315160761|gb|EFU04778.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645]
gi|315579360|gb|EFU91551.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630]
gi|397335403|gb|AFO43075.1| tRNA pseudouridine synthase A [Enterococcus faecalis D32]
Length = 249
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 135/302 (44%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F G QKQ N RTV +E+ + G V++ S RTDAGVHA
Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLVRMNNGHSVTVFGSGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + +P E + R A++ Q+ DI V V V DFHAR+
Sbjct: 61 QVIHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARYHVI 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG
Sbjct: 108 EKTYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVED 166
Query: 236 PIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ E +HV+E F+
Sbjct: 167 KVRTIHEASVHVNETGDELTFT-------------------------------------- 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY +R++VG L +G G L + + I+ AK A P A GL L VK
Sbjct: 189 --FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVK 246
Query: 354 YD 355
Y+
Sbjct: 247 YE 248
>gi|229194805|ref|ZP_04321592.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1293]
gi|228588653|gb|EEK46684.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1293]
Length = 250
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 56/305 (18%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M NK + Y + ++Y G RF G Q+ N T+ G +E + +G+ + I SRTDA
Sbjct: 1 MKENK-MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDA 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V + + E L H V++ +N +L + DI +T+V V FH
Sbjct: 60 GVHALNQVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVHDRFH 106
Query: 170 ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRAS 229
AR+ ++ +TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F +
Sbjct: 107 ARYNSKAKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNA 165
Query: 230 GCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKH 289
+ S +R E++ +V+ A F I
Sbjct: 166 KSKKKSMVR---EVYALDVMEEAGFVQIR------------------------------- 191
Query: 290 RSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FL++ VR IVG L VG G+L + IL+AK + +A A GL L
Sbjct: 192 ------VSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGLYL 245
Query: 350 GFVKY 354
V++
Sbjct: 246 ENVEF 250
>gi|229591618|ref|YP_002873737.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens SBW25]
gi|229363484|emb|CAY50706.1| pseudouridylate synthase I [Pseudomonas fluorescens SBW25]
Length = 284
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 138/316 (43%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLMCAGRTDAGVHACGQV 77
Query: 118 CHVDVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + K + PHD SV + + +P+ FHARF+
Sbjct: 78 VHFDTQAERSMKAWVMGANINLPHDVSV-----------------SWAKVMPAHFHARFK 120
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD M EA + LVG HDFS+F
Sbjct: 121 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDAERMAEAAQHLVGVHDFSAF 172
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ + L V+ +G V I
Sbjct: 173 RAGQCQAKSPIKEVHHLRVTR-----------------------------HGKMIVLDI- 202
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +GTGE V+ + +L+++ A G
Sbjct: 203 ----------RAGAFLHHMVRNIAGVLMTIGTGERPVAWAKEVLESRVRRTGGVTAHPFG 252
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LPE
Sbjct: 253 LYLVDVEYRDEFELPE 268
>gi|312135434|ref|YP_004002772.1| tRNA pseudouridine synthase a [Caldicellulosiruptor owensensis OL]
gi|311775485|gb|ADQ04972.1| tRNA pseudouridine synthase A [Caldicellulosiruptor owensensis OL]
Length = 244
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 133/289 (46%), Gaps = 54/289 (18%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
L+ +EY GT + G QKQ N +T+ G +EEA K G+ V++ S RTD GVHA + +
Sbjct: 5 LLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQKANF 64
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ S + P + P +SV+ GDI V D VP DF AR+ A+++TY
Sbjct: 65 ---KTSSKIPTDKFPLALNSVL----------PGDISVKDAVEVPLDFSARYSAKQKTYK 111
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y I + ++ ++ A++ ELD+ AMQ AC+ +G +DF SF ++ +A + IR
Sbjct: 112 YLIYNKKSRPALL-RNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIR-- 168
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
H+ T ++ + A
Sbjct: 169 ---HIYNAYLTF-----------------------------------ENECIAIYITANG 190
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FLY+ R+I G + VG G+L D+ I+++K T A P GL L
Sbjct: 191 FLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTLAGKTLPPWGLYL 239
>gi|258627102|ref|ZP_05721898.1| tRNA pseudouridine synthase A [Vibrio mimicus VM603]
gi|258580620|gb|EEW05573.1| tRNA pseudouridine synthase A [Vibrio mimicus VM603]
Length = 264
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 129/300 (43%), Gaps = 58/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT + G Q+Q ++V LE+A K PV + + RTDAGVH V
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + +V + D+ V VP DFHARF A R
Sbjct: 62 HFDTTA-------------ERQMVAWTMGANANLPKDVAVRWATAVPDDFHARFSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + + + H ELD+ MQ+A + L+G +DF+SFRA CQ+ SP R
Sbjct: 109 YRYVIYNHVYRPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-AR 297
+ L+V+ +H Y VI +
Sbjct: 168 NIMHLNVT-----------------------------------------RHGRYVVIDIK 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +F++H VR I G L AVG GE ++ +L+ K T A+ A A GL L V+ D P
Sbjct: 187 ANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL--VEVDYP 244
>gi|168208061|ref|ZP_02634066.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|168215906|ref|ZP_02641531.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|169341141|ref|ZP_02863234.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|422345695|ref|ZP_16426609.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|422873893|ref|ZP_16920378.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
gi|169299748|gb|EDS81800.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|170660642|gb|EDT13325.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|182381869|gb|EDT79348.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|373227360|gb|EHP49674.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|380305126|gb|EIA17407.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
Length = 248
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 130/297 (43%), Gaps = 58/297 (19%)
Query: 62 IAVEYIGTRFSGSQKQ----LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
I ++Y G+++ G QKQ N TV LE+ K + + + RTD+GVHA + V
Sbjct: 6 ITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYV 65
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
+ + + + +N +L DI VT++R FHARF + +
Sbjct: 66 ANFKTNSLMTLEQ-----------IIEYINEYLPE--DIRVTEIREASERFHARFNVKSK 112
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY Y I + VF + AWHV E+LDL AM+E K L+G HDF SF + + S +
Sbjct: 113 TYEYTI-DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTL 171
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT++ + E +N+ I+
Sbjct: 172 RTINSIEFHE-------------------------------NNNILSIK---------IN 191
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL + VR+IVG L VG G++ + IL+AK AS APA GL L + Y
Sbjct: 192 GNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHGLCLLELNY 248
>gi|423421412|ref|ZP_17398501.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG3X2-1]
gi|401098578|gb|EJQ06590.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG3X2-1]
Length = 245
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 141/299 (47%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y + ++Y G R+ G Q+ N T+ G +E + +G+ + I SRTDAGVHA +
Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + K E L H V++ +N +L + DI +T V VP FHAR+ ++
Sbjct: 61 QVANF--------KSDEKLVEHK---VKKYLNQYLPN--DISITSVEEVPDRFHARYNSK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F + + S
Sbjct: 108 AKTYLYKIWN-EEHTNPFMRKHSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R E++ +V+ A F I
Sbjct: 167 MVR---EVYSLDVIEEAGFVQIR------------------------------------- 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL++ VR IVG L VG G+L + IL+ K + +A A GL L V++
Sbjct: 187 VSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGLYLENVEF 245
>gi|409357903|ref|ZP_11236271.1| tRNA pseudouridine synthase TruA [Dietzia alimentaria 72]
Length = 297
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 144/302 (47%), Gaps = 45/302 (14%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
+R + V Y GT FSG +Q RTV GVLE K + PV+++++ RTDAGVHA + V
Sbjct: 4 RRIRLDVAYDGTDFSGWARQPGLRTVCGVLEAELAKVLRNPVTLTVAGRTDAGVHARAQV 63
Query: 118 CHVDVE--RISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
CH DV+ + +R L +++RR + D+ V R V +F ARF A
Sbjct: 64 CHFDVDPAWLDQRS----LDGRPEALIRRLARLLPR---DVTVMGARWVSDEFDARFSAL 116
Query: 176 ERTYFYRILSGP---EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQ 232
R Y YR+ + P EP + AW + DL A++ A + L+G HDF++F C+
Sbjct: 117 RRHYEYRLTTAPWGAEPTRARDTA-AWQ--RQADLEAVRAASQRLLGLHDFAAF----CR 169
Query: 233 ANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSY 292
T+ EL + + + D+P G + V +
Sbjct: 170 RREGATTIRELQRFDWRTEP--DARGADAP---------------GATEV---------W 203
Query: 293 EVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
A +F + VR +VG + AVG G + + +L K ++A P+APACGL++ V
Sbjct: 204 IASVSADAFCWSMVRSLVGGVMAVGEGRRNLDWISGLLGEKERSSAVPVAPACGLAMVSV 263
Query: 353 KY 354
+Y
Sbjct: 264 EY 265
>gi|422698818|ref|ZP_16756703.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346]
gi|315172660|gb|EFU16677.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346]
Length = 249
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 135/302 (44%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F G QKQ N RTV +E+ + G V++ S RTDAGVHA
Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + +P E + R A++ Q+ DI V V V DFHAR+
Sbjct: 61 QVIHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARYHVI 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG
Sbjct: 108 EKTYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVED 166
Query: 236 PIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ E +HV+E F+
Sbjct: 167 KVRTIHEASVHVNEKGDELTFT-------------------------------------- 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY +R++VG L +G G L + + I+ AK A P A GL L VK
Sbjct: 189 --FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVK 246
Query: 354 YD 355
Y+
Sbjct: 247 YE 248
>gi|423613864|ref|ZP_17589723.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD107]
gi|401240464|gb|EJR46865.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD107]
Length = 245
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 141/299 (47%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y + ++Y G R+ G Q+ N T+ G +E + +G+ + I SRTDAGVHA +
Sbjct: 1 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIVGCSRTDAGVHALN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + K E L H V++ +N +L + DI +T+V V FHAR+ ++
Sbjct: 61 QVANF--------KSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVSDRFHARYNSK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F + + S
Sbjct: 108 AKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R + L VSE A F I
Sbjct: 167 MVREVYTLEVSE---EAGFVQIR------------------------------------- 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL++ VR IVG L VG G+L + IL+AK + +A A GL L V++
Sbjct: 187 ISGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGLYLENVEF 245
>gi|440751375|ref|ZP_20930608.1| tRNA pseudouridine synthase A [Mariniradius saccharolyticus AK6]
gi|436480017|gb|ELP36282.1| tRNA pseudouridine synthase A [Mariniradius saccharolyticus AK6]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 141/302 (46%), Gaps = 58/302 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
+RY + + Y G + G Q Q N TV LE+A H +GQPV I S RTD GVHA+ V
Sbjct: 4 RRYFLELAYRGGNYHGWQIQGNAHTVQAELEKAIHTVLGQPVGIMGSGRTDTGVHASFQV 63
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H+D E GE+ D + + R++N L DI + +R V +D HARF A+ R
Sbjct: 64 AHMDWE-------GEL----DGAHLVRSLNGILPK--DISIFRMREVKADAHARFDAKWR 110
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
+Y Y+I P F + AW + D++ M EA +L+ DF F S +
Sbjct: 111 SYTYKITLQKNP---FLEGLAWQIFHAPDIQKMNEAATLLLEWEDFQCF--------SKV 159
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
T D H + + A + I G +F +++
Sbjct: 160 HT-DVNHFNCKIKVATWEQI---------------------GPELF--------FQIT-- 187
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A FL VR IVG L AVG G++ +D ++IL+++ + A APA GL L V Y P
Sbjct: 188 ANRFLRGMVRAIVGTLLAVGHGKIDRTDFQKILESRERSQAKSAAPAHGLYLCNVVY--P 245
Query: 358 ED 359
ED
Sbjct: 246 ED 247
>gi|415798540|ref|ZP_11498505.1| tRNA pseudouridine synthase A [Escherichia coli E128010]
gi|323161584|gb|EFZ47470.1| tRNA pseudouridine synthase A [Escherichia coli E128010]
Length = 270
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLLVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L GDI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANL--PGDIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPECWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|225862468|ref|YP_002747846.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102]
gi|225790549|gb|ACO30766.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102]
Length = 245
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 142/299 (47%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y + ++Y G RF G Q+ N T+ G +E + IG+ + I SRTDAGVHA +
Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + + E L H V++ +N +L + DI +T+V V FHAR+ ++
Sbjct: 61 QVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVHDRFHARYNSK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F + + S
Sbjct: 108 AKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R E++ EV+ A F I
Sbjct: 167 MVR---EVYSLEVMEEAGFVQIR------------------------------------- 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL++ VR IVG L VG G+L + IL+AK + +A A GL L V++
Sbjct: 187 VSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGLYLENVEF 245
>gi|325266500|ref|ZP_08133177.1| tRNA pseudouridine synthase A [Kingella denitrificans ATCC 33394]
gi|324981943|gb|EGC17578.1| tRNA pseudouridine synthase A [Kingella denitrificans ATCC 33394]
Length = 265
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 132/297 (44%), Gaps = 55/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQL-NCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY + + Y G+RF G QKQ TV LE A + G+PVS+ + RTD GVHA + V
Sbjct: 8 RYALTLAYDGSRFFGWQKQAEGVATVQAALEHALSQIAGEPVSVIAAGRTDTGVHATAQV 67
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D +P S+ VR H Q + V + S FHARF A R
Sbjct: 68 VHFDSR---ADRP-------LSAWVRGVNAHLPQG---VAVHKAQIADSAFHARFDASGR 114
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y + S P + W L+ AM++A ++LVG HDFSSFRA+ CQA SP+
Sbjct: 115 HYRYLLESAPVRSPLLYGRAGW-THYALNDDAMRQAAQLLVGEHDFSSFRAAQCQAKSPV 173
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+T+ +H+ Q + L +D
Sbjct: 174 KTMYAVHL-------------QRTGSLLKLD---------------------------LH 193
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A +FL+H VR I+G L VG G L+V+ +++ ++ A P GL L V Y
Sbjct: 194 ANAFLHHMVRNIMGALVYVGCGRLSVAQFGELIETRSRLYAPPTFMPDGLYLTGVDY 250
>gi|416303141|ref|ZP_11653505.1| tRNA pseudouridine synthase A [Shigella flexneri CDC 796-83]
gi|420326472|ref|ZP_14828223.1| tRNA pseudouridine synthase A [Shigella flexneri CCH060]
gi|320183774|gb|EFW58608.1| tRNA pseudouridine synthase A [Shigella flexneri CDC 796-83]
gi|391249989|gb|EIQ09212.1| tRNA pseudouridine synthase A [Shigella flexneri CCH060]
Length = 270
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 143/315 (45%), Gaps = 62/315 (19%)
Query: 51 MSTNKRIQRYLIA--VEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTD 108
MS +++ Y IA +EY G+++ G Q+Q R+V LE+A + +P+++ + RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 109 AGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDF 168
AGVH V H E ++RK + VN L DI V V+ VP DF
Sbjct: 61 AGVHGTGQVVH--FETTAQRK---------DAAWTLGVNANLPD--DIAVRWVKAVPDDF 107
Query: 169 HARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA 228
HARF A R Y Y I + +V K H E LD M A + L+G +DF+SFRA
Sbjct: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRA 166
Query: 229 SGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKK 288
CQ+ +P R + ++V+ +
Sbjct: 167 VQCQSRTPWRNVMHINVT-----------------------------------------R 185
Query: 289 HRSYEVI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
H Y V+ +A +F++H VR IVG L VG S + +L AK T A+ A A GL
Sbjct: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245
Query: 348 SLGFV----KYDLPE 358
L V +YDLP+
Sbjct: 246 YLVAVDYPDRYDLPK 260
>gi|162533082|ref|YP_001621406.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213971672|ref|ZP_03399779.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato T1]
gi|301386519|ref|ZP_07234937.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato
Max13]
gi|302134665|ref|ZP_07260655.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422660536|ref|ZP_16722946.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|118201619|gb|ABK79682.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213923557|gb|EEB57145.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato T1]
gi|331019139|gb|EGH99195.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 274
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 132/310 (42%), Gaps = 69/310 (22%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + K + PHD SV + R +P+ FHARF+
Sbjct: 68 VHFDTQAERSLKAWVMGANINLPHDVSV-----------------SWARVMPATFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQA 233
A R Y Y I + + ++ W+ LD+ M +A + LVG HDFS+FRA CQA
Sbjct: 111 AIARRYRYVIYNDQIRPAHLNQEITWN-HRPLDVERMAQAAEYLVGTHDFSAFRAGQCQA 169
Query: 234 NSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
SPI+ L L V+ +H
Sbjct: 170 KSPIKQLHHLRVT-----------------------------------------RHGKMI 188
Query: 294 VI-ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV 352
VI RA +FL+H VR I GVL +G GE V +L+++ A GL L V
Sbjct: 189 VIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYLVQV 248
Query: 353 KY----DLPE 358
+Y LPE
Sbjct: 249 EYRDEFPLPE 258
>gi|114331148|ref|YP_747370.1| tRNA pseudouridine synthase A [Nitrosomonas eutropha C91]
gi|122313976|sp|Q0AGX7.1|TRUA_NITEC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|114308162|gb|ABI59405.1| tRNA pseudouridine synthase A [Nitrosomonas eutropha C91]
Length = 277
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 131/295 (44%), Gaps = 54/295 (18%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
++ +EY G + G QKQ + +V LE A + + + + RTDAGVHA V H
Sbjct: 4 VLILEYDGRGYCGWQKQPDRISVQSRLESALSRIASSQIQVVAAGRTDAGVHALCQVVHF 63
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ V+ P + V R N L DI V V DFHARF A ERTY
Sbjct: 64 ETH---------VIRPLTAWV--RGANALLPD--DISVLWASEVNDDFHARFSATERTYL 110
Query: 181 YRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTL 240
Y +LS P +F+ W LDL MQ A + L+G HDFS+FR++ CQA + IR L
Sbjct: 111 YYLLSRPARPGIFQGKTGW-THYSLDLEKMQTAARFLIGEHDFSAFRSAECQAKNAIRKL 169
Query: 241 DELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARS 300
L +S+ S F + +E A A
Sbjct: 170 VRLDISQ--------------------------------SEQFFV------FEFCANA-- 189
Query: 301 FLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FL+H VR I+G L +G G+ ++ +L + T A+P GL L V+YD
Sbjct: 190 FLHHMVRNILGALIYIGQGKYPPEWIQILLGKRDRTLAAPTFSPDGLYLAGVRYD 244
>gi|310659467|ref|YP_003937188.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1) [[Clostridium]
sticklandii]
gi|308826245|emb|CBH22283.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1) [[Clostridium]
sticklandii]
Length = 249
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 139/298 (46%), Gaps = 59/298 (19%)
Query: 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHV 120
LI +EY GT ++G Q+Q N +V +E+A +K + I S RTDA VHA V +
Sbjct: 5 LILIEYDGTNYNGWQRQPNAASVQEEIEKAIYKVTKKQTDIYGSGRTDAKVHALGQVANF 64
Query: 121 DVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYF 180
+ +P +V A+N L DI++ + VP +FH+R+ A+ +TY
Sbjct: 65 HTD--------SAIPTEKFAV---ALNTNLPD--DIVILNSIEVPEEFHSRYSAKVKTYR 111
Query: 181 YRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
YR+L+ P P+ E++ A+HV E+LDL ++ K+L+G HDF +F +SG + IR
Sbjct: 112 YRVLNTPVRRPI---ERNYAYHVREDLDLDIIKTMAKLLIGEHDFKAFSSSGSSVKTTIR 168
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+ ++ ++ K++ E
Sbjct: 169 TIYDIKIT----------------------------------------KENDIIEFEFTG 188
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
FLY+ VR+IVG L +G T D++R L A P AP GL L V Y+L
Sbjct: 189 NGFLYNMVRIIVGTLIELGKKS-TRYDIQRALMTGDRGFAGPTAPPQGLFLKKVSYNL 245
>gi|182625331|ref|ZP_02953105.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
gi|177909489|gb|EDT71936.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 130/297 (43%), Gaps = 58/297 (19%)
Query: 62 IAVEYIGTRFSGSQKQ----LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
I ++Y G+++ G QKQ N TV LE+ K + + + RTD+GVHA + V
Sbjct: 6 ITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYV 65
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
+ + + + +N +L DI +T++R FHARF + +
Sbjct: 66 ANFKTNSLMTLEQ-----------IIEYINEYLPE--DIRITEIREASERFHARFNVKSK 112
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY Y I + VF + AWHV E+LDL AM+E K L+G HDF SF + + S +
Sbjct: 113 TYEYTI-DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTL 171
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT++ + E +N+ I+
Sbjct: 172 RTINSIEFHE-------------------------------NNNILSIK---------IN 191
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL + VR+IVG L VG G++ + IL+AK AS APA GL L + Y
Sbjct: 192 GNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHGLCLLELNY 248
>gi|161869166|ref|YP_001598332.1| tRNA pseudouridine synthase A [Neisseria meningitidis 053442]
gi|421566352|ref|ZP_16012103.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM3081]
gi|433537644|ref|ZP_20494135.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 77221]
gi|189030137|sp|A9M0B8.1|TRUA_NEIM0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|161594719|gb|ABX72379.1| tRNA pseudouridine synthase [Neisseria meningitidis 053442]
gi|402340365|gb|EJU75566.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM3081]
gi|432270393|gb|ELL25531.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 77221]
Length = 265
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 142/307 (46%), Gaps = 60/307 (19%)
Query: 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDA 109
M T ++ QR+ I + Y G+RF G QKQ + TV LE A + G+ VS +++ RTD
Sbjct: 1 MDTAQK-QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDT 59
Query: 110 GVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFH 169
GVHA + V H D + P + V R VN L EG I V R V +FH
Sbjct: 60 GVHATAQVVHFDTAAVR---------PVQAWV--RGVNAHL-PEG-IAVLHARQVAPEFH 106
Query: 170 ARFRAQERTYFYRILSGP--EPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFR 227
ARF A R Y Y + S P PL K+RA +LD+ M++A +L+G DFSSFR
Sbjct: 107 ARFDAYGRHYRYLLESAPVRSPLL---KNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFR 163
Query: 228 ASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRK 287
A+ CQA SP++T+ +++ S L +D
Sbjct: 164 AAECQAKSPVKTIYRADLTQ-------------SSGLVRLD------------------- 191
Query: 288 KHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
+FL+H VR I+G L VG+G L+V +++ ++ A P GL
Sbjct: 192 --------LHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 243
Query: 348 SLGFVKY 354
L V Y
Sbjct: 244 YLTGVDY 250
>gi|148258520|ref|YP_001243105.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. BTAi1]
gi|166228680|sp|A5ESQ5.1|TRUA_BRASB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|146410693|gb|ABQ39199.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. BTAi1]
Length = 245
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 135/298 (45%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY GT F G Q Q +V G LE A G P + S RTDAGVHA
Sbjct: 1 MPRYKLTIEYDGTPFCGWQLQETLPSVQGALEAAVQATCGVPTRVHGSGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + +P + +R A+N L+ + V + V F ARF A++
Sbjct: 61 VAHCDIAK--DFRPDK---------LRDALNAHLRPN-PVAVLEAEIVSDTFEARFSARK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ L+ E R W V + LD AM A + L+G HDF++FR + CQA SP
Sbjct: 109 RHYRYRIVNRRSNLA-LEVGRVWRVPQRLDSDAMHAAAQRLIGRHDFTTFRDTECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+TLD+L V + + ++
Sbjct: 168 EKTLDQLDVV----------------------------------------RDGDAVTILT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARS+L+ QVR +VG L VG G + D+ L A+ A +AP GL L V Y
Sbjct: 188 SARSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARNRAACGVVAPPEGLYLVKVDY 245
>gi|55820220|ref|YP_138662.1| tRNA pseudouridine synthase A [Streptococcus thermophilus LMG
18311]
gi|55822111|ref|YP_140552.1| tRNA pseudouridine synthase A [Streptococcus thermophilus CNRZ1066]
gi|418027764|ref|ZP_12666374.1| tRNA pseudouridine(38-40) synthase [Streptococcus thermophilus CNCM
I-1630]
gi|445370957|ref|ZP_21425933.1| tRNA pseudouridine synthase A [Streptococcus thermophilus MTCC
5460]
gi|445386165|ref|ZP_21427647.1| tRNA pseudouridine synthase A [Streptococcus thermophilus MTCC
5461]
gi|62901189|sp|Q5M1T6.1|TRUA_STRT1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|62901193|sp|Q5M6C9.1|TRUA_STRT2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|55736205|gb|AAV59847.1| tRNA pseudouridine synthase A (pseudouridylate synthase I)
[Streptococcus thermophilus LMG 18311]
gi|55738096|gb|AAV61737.1| tRNA pseudouridine synthase A (pseudouridylate synthase I)
[Streptococcus thermophilus CNRZ1066]
gi|354689766|gb|EHE89740.1| tRNA pseudouridine(38-40) synthase [Streptococcus thermophilus CNCM
I-1630]
gi|444751495|gb|ELW76232.1| tRNA pseudouridine synthase A [Streptococcus thermophilus MTCC
5461]
gi|444751563|gb|ELW76289.1| tRNA pseudouridine synthase A [Streptococcus thermophilus MTCC
5460]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 132/298 (44%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKF-IGQPVSISLSSRTDAGVHAASNV 117
RY + Y GT FSG Q+Q N R++ +E+ + G PV++ + RTDAGVHA V
Sbjct: 3 RYKATISYDGTLFSGFQRQPNARSIQEEIEKTLLRLNSGTPVTVHGAGRTDAGVHAYGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D+ + +R P ++ D+ Q DI + + V +FHAR+ +
Sbjct: 63 IHFDLPQ--ERDPEKLRFGLDT-----------QCPDDIDIVSIELVSEEFHARYSKHIK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY + + +G P + ++ A H L L MQEA LVG HDF+ F ASG + +
Sbjct: 110 TYEFLVDAG-RPKNPMMRNYAIHYPYPLSLALMQEAAMELVGTHDFTGFTASGTSVENKV 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ + VS I +K Y
Sbjct: 169 RTITQASVS--------------------------------------IDEKTGFYVFAFS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY QVR +VG L +G G + VS V+ +L+++ A P GL L ++Y+
Sbjct: 191 GNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTVAGNGLYLKEIRYE 248
>gi|257866559|ref|ZP_05646212.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257872925|ref|ZP_05652578.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10]
gi|257800517|gb|EEV29545.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257807089|gb|EEV35911.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10]
Length = 248
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 130/298 (43%), Gaps = 53/298 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASNV 117
RY + Y GT F G Q+Q N RTV +E+ K GQP+ I S RTDAGVHA V
Sbjct: 3 RYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTKMNNGQPIQIQGSGRTDAGVHAQGQV 62
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D +++P E + R ++ Q+ D+ V V V FHAR+ E+
Sbjct: 63 IHFD---FPQKRPLEKM--------RFGLD--TQTPEDVAVKSVEIVDDTFHARYLVVEK 109
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
TY +R+ G +P S F + A + LDL +Q A +G HDF+SF A+G +
Sbjct: 110 TYQFRVDIG-KPRSPFRRHYASYYPYPLDLEKIQRALPDFLGTHDFTSFCATGSSVDDKT 168
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RT+ E S V+ A G +F R
Sbjct: 169 RTIHE--ASMAVNDA-------------------------GDELIFTF-----------R 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
FLY +R++VG L +G G L + I+ K AA P A GL L V Y+
Sbjct: 191 GDGFLYKMIRIMVGTLLKIGNGRLAPDSIPAIIAQKDRNAAGPTAHPEGLYLVHVAYE 248
>gi|449145725|ref|ZP_21776525.1| tRNA pseudouridine synthase A [Vibrio mimicus CAIM 602]
gi|449078591|gb|EMB49525.1| tRNA pseudouridine synthase A [Vibrio mimicus CAIM 602]
Length = 264
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 129/300 (43%), Gaps = 58/300 (19%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + +EY GT + G Q+Q ++V LE+A K PV + + RTDAGVH V
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D + +V + D+ V VP DFHARF A R
Sbjct: 62 HFDTTA-------------ERQMVAWTMGANANLPKDVAVRWATAVPDDFHARFSATARR 108
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y I + + + H ELD+ MQ+A + L+G +DF+SFRA CQ+ SP R
Sbjct: 109 YRYVIYNHVYRPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWR 167
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI-AR 297
+ L+V+ +H Y VI +
Sbjct: 168 NIMHLNVT-----------------------------------------RHGRYVVIDIK 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +F++H VR I G L AVG GE ++ +L+ K T A+ A A GL L V+ D P
Sbjct: 187 ANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL--VEVDYP 244
>gi|407892594|ref|ZP_11151624.1| tRNA pseudouridine synthase A [Diplorickettsia massiliensis 20B]
Length = 259
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 130/300 (43%), Gaps = 56/300 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R + + Y GT + G Q Q T+ LE A + PV +S + RTD GVHA V
Sbjct: 2 RIALGISYQGTHYHGWQAQPQLVTIQSTLEAAIARIANHPVELSCAGRTDKGVHALGQVG 61
Query: 119 HVDVERISKR-KPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D +S R K G +L +N +L DI V V V FHARF A R
Sbjct: 62 HFDT--VSHREKRGWLL----------GINTYLPQ--DIRVDWVEEVGEAFHARFSALFR 107
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y I + P +++ + H LD + MQEA L+G HDFS+FRAS CQ+ +PI
Sbjct: 108 RYRYIIRNHSAPSALWNQYTT-HYYRPLDEQRMQEAAMYLIGEHDFSAFRASSCQSKTPI 166
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
R + EL V R+ HR I
Sbjct: 167 REITELRV---------------------------------------FRQAHRVMIDIT- 186
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
A +FL+H VR I VL +G+G+ + E +L+ + A AP GL L V Y P
Sbjct: 187 ANAFLHHMVRNIAAVLMLIGSGKQSPKWAEEVLRTCDRSQAGVTAPPNGLYLCEVGYPNP 246
>gi|228913175|ref|ZP_04076814.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228846580|gb|EEM91593.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 250
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 143/299 (47%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y + ++Y G RF G Q+ N T+ G +E + +G+ + I SRTDAGVHA +
Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + + E L H V++ +N +L + DI +T+V V FHAR+ ++
Sbjct: 66 QVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVHDRFHARYNSK 112
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F + + S
Sbjct: 113 AKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKS 171
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R E++ +V+ A F I
Sbjct: 172 MVR---EVYTLDVMEEAGFVQIR------------------------------------- 191
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL++ VR IVG L VG G+L + +IL+AK + +A A GL L V++
Sbjct: 192 VSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGLYLENVEF 250
>gi|422728411|ref|ZP_16784829.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012]
gi|315151105|gb|EFT95121.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012]
Length = 249
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 136/302 (45%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y GT F G QKQ N RTV +E+ + G+ V++ S RTDAGVHA
Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + +P E + R A++ Q+ DI V V V DFHAR+
Sbjct: 61 QVIHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARYHVI 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG
Sbjct: 108 EKTYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVED 166
Query: 236 PIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
+RT+ E +HV+E F+
Sbjct: 167 KVRTIHEASVHVNETGDELTFT-------------------------------------- 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY +R++VG L +G G L + + I+ AK A P A GL L V+
Sbjct: 189 --FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVR 246
Query: 354 YD 355
Y+
Sbjct: 247 YE 248
>gi|365885230|ref|ZP_09424241.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Bradyrhizobium sp. ORS 375]
gi|365286176|emb|CCD96772.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Bradyrhizobium sp. ORS 375]
Length = 245
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 135/296 (45%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G F G Q Q +V G LE A G + S RTDAGVHA V
Sbjct: 3 RYKLTIEYDGAPFCGWQLQETLPSVQGALEAAVQATCGVATRVHGSGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D+ + E P +R A+N L+ + V D VP F ARF A++R
Sbjct: 63 HCDIAK-------EFRP----DKLRDALNAHLRPN-PVAVLDAEIVPDAFEARFSARKRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI++ L+ E R W V + LD AM A + L+G HDF++FR + CQA SP +
Sbjct: 111 YRYRIVNRRSNLA-LEVGRVWRVPQRLDSDAMHVAAQRLIGKHDFTTFRDTECQAKSPEK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD+L V +D ++ ++ A
Sbjct: 170 TLDQLDVV------------RDGDAIT----------------------------ILTSA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RS+L+ QVR +VG L VG G + D+ L A++ A +AP GL L V Y
Sbjct: 190 RSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARSRAACGVVAPPEGLYLVKVDY 245
>gi|387886596|ref|YP_006316895.1| tRNA pseudouridine synthase A [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871412|gb|AFJ43419.1| tRNA pseudouridine synthase A [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 258
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 138/303 (45%), Gaps = 64/303 (21%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
++ YL+ +EY G + G Q+Q + +V LE+A K Q + ++ + RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 117 VC--HVDVERI---SKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHAR 171
V H D +R R +LP DI + D+R V +DF++R
Sbjct: 61 VVNFHSDADRTLSSWMRGTNALLPK------------------DIKILDIREVDNDFNSR 102
Query: 172 FRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGC 231
F A RTY Y I + +F + W EL++ M +ACK L+G DF+SFR+S C
Sbjct: 103 FTAINRTYNYIIYNNITSSPIFVEHCLWE-NRELNIDKMNQACKYLLGEQDFTSFRSSQC 161
Query: 232 QANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRS 291
Q+N+P R + + +E + KLG
Sbjct: 162 QSNTPFRNIQK---AEFI----------------------KLG-------------NFIV 183
Query: 292 YEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGF 351
+EVI A FL+H +R +G L VG + ++ +L+AK T A+ A A GL
Sbjct: 184 FEVIGNA--FLHHMIRNFIGSLLKVGLEFESPEWIKLVLEAKDRTRAAETAKAHGLYFVG 241
Query: 352 VKY 354
V+Y
Sbjct: 242 VEY 244
>gi|85859802|ref|YP_462004.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB]
gi|85722893|gb|ABC77836.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB]
Length = 259
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 133/293 (45%), Gaps = 53/293 (18%)
Query: 62 IAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVD 121
+ +EY GT + G Q+Q N T+ +LEE+ + +PV + S RTDAGVHA + V +
Sbjct: 20 LVLEYDGTAYRGWQRQGNLPTIQKILEESIARITQEPVILHGSGRTDAGVHALNQVANF- 78
Query: 122 VERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFY 181
R S R P ++ + R +N L GDI++ + V +FH+R+ A+ ++Y Y
Sbjct: 79 --RTSSRIP--------AANLLRGLNSLL--PGDIVIRETEDVDEEFHSRYSAKSKSYLY 126
Query: 182 RILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIRTLD 241
RIL+ P S +++ AW + LDL M A +L G HDF+SF A+G S +RT+
Sbjct: 127 RILNSPVR-SPLQRNSAWFIRCCLDLEKMAGAISLLCGKHDFTSFCAAGSDVKSCVRTII 185
Query: 242 ELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSF 301
+ + S+ D F
Sbjct: 186 RAEIERETEQVITISVEAD---------------------------------------GF 206
Query: 302 LYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
L H VR IVG L +G G+ + + IL+AK A AP GL L V Y
Sbjct: 207 LRHMVRNIVGTLVEIGAGQDSSEIMRDILEAKDRGCAGITAPPQGLFLQKVSY 259
>gi|423461506|ref|ZP_17438303.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5X2-1]
gi|401136644|gb|EJQ44231.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5X2-1]
Length = 245
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 141/299 (47%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y + ++Y G RF G Q+ N T+ G +E + IG+ + I SRTDAGVHA +
Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + + E L H V++ +N +L + DI +T+V V FHAR+ ++
Sbjct: 61 QVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITNVEEVQERFHARYNSK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F + + S
Sbjct: 108 AKTYLYKIWN-EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R E++ EV+ A F I
Sbjct: 167 MVR---EVYTLEVMEAAGFVQIR------------------------------------- 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL++ VR IVG L VG G+L + IL+ K + +A A GL L V++
Sbjct: 187 VSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQINCLAEASGLYLENVEF 245
>gi|229056264|ref|ZP_04195685.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603]
gi|228721069|gb|EEL72607.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603]
Length = 268
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 138/294 (46%), Gaps = 55/294 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y + ++Y G R+ G Q+ N T+ G +E + +G+ + I SRTDAGVHA +
Sbjct: 24 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKEIEIIGCSRTDAGVHALN 83
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + + E L H V++ +N +L + DI +T V VP FHAR+ ++
Sbjct: 84 QVANF--------QSDEKLVEHK---VKKYLNQYLPN--DISITSVEEVPDRFHARYNSK 130
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY Y+I + E + F + + HV ++L++++M+EA K LVG HDF++F + + S
Sbjct: 131 AKTYLYKIWN-EEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKS 189
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R + L VSE S IR
Sbjct: 190 MVREVYTLDVSE-------------------------------ESGFVQIR--------- 209
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSL 349
FL++ VR IVG L VG G+L V + IL+ K + +A A GL L
Sbjct: 210 VSGNGFLHNMVRKIVGALIEVGLGQLEVDAIPNILEEKQRNQINCLAEASGLYL 263
>gi|88799996|ref|ZP_01115567.1| tRNA-pseudouridine synthase I [Reinekea blandensis MED297]
gi|88777274|gb|EAR08478.1| tRNA-pseudouridine synthase I [Reinekea sp. MED297]
Length = 286
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 134/308 (43%), Gaps = 60/308 (19%)
Query: 58 QRYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
R ++ +EY GT F G Q Q + T+ LE A K +PVS ++ RTDAGVHA +
Sbjct: 14 HRIVLCLEYKGTAFHGWQIQKSGVSTIQAALEAAIAKVADEPVSTIVAGRTDAGVHATNQ 73
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H D R + G + +N L DI V V V FHARF AQE
Sbjct: 74 IVHFDT-RAQRSDYGW----------KMGINGRLPD--DISVKWVTQVDEHFHARFSAQE 120
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y + I + ++ + W ELD+ MQ+A L+G HDFSSFRA+ CQA+SP
Sbjct: 121 RAYRFIIHNNWVKSALLHEVTTWE-QYELDVGLMQQAANRLLGTHDFSSFRAAECQAHSP 179
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI- 295
+RTL EL V+ FG + VI
Sbjct: 180 VRTLRELTVAR-----------------------------------FG------EFIVIQ 198
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY- 354
ARA FL+H VR +VGV+ +G G V +L K A GL Y
Sbjct: 199 ARADGFLHHMVRNLVGVMLPIGRGRKPVDWASDVLNYKDRRRGGVTAKGNGLYFVRASYN 258
Query: 355 --DLPEDD 360
DLP D
Sbjct: 259 VGDLPSAD 266
>gi|336066371|ref|YP_004561229.1| tRNA pseudouridine synthase A [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296317|dbj|BAK32188.1| tRNA pseudouridine synthase A [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 245
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 138/298 (46%), Gaps = 54/298 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ V+Y G+ F G QKQ R V +E + +P+ IS S RTDAGVHA
Sbjct: 1 MMRFKATVQYDGSMFKGWQKQPLGRCVQTEIESVLTRINKEPIHISGSGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D + D + RA+N L + DI++TD+ V +FHARF
Sbjct: 61 VFHFD-----------NVVDMDEKQLFRALNTLLPN--DIVITDIHPVEPNFHARFDVVS 107
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
+TY YR+ G L FE++ + + LDL+A+++A + VG HDF+SF A+G
Sbjct: 108 KTYEYRLNMGAYNL--FERNYVYQYNKALDLQAIRDAMESFVGTHDFTSFNATG------ 159
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
LDE+ ++V + F I D H ++ +I
Sbjct: 160 ---LDEIE-NQVRTITNFDLIVSDD---------------------------HLNFVIIG 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL + VR+IV A G+G+ ++ ++LKA + S ACGL L V Y
Sbjct: 189 DG--FLRYMVRMIVATCVACGSGKCDAHEIAQMLKAADKNSVSYNIDACGLYLKKVNY 244
>gi|423543905|ref|ZP_17520263.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB5-5]
gi|423626368|ref|ZP_17602145.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD148]
gi|401185609|gb|EJQ92701.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB5-5]
gi|401252547|gb|EJR58805.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD148]
Length = 245
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 140/299 (46%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
+ Y + ++Y G R+ G Q+ N T+ G +E + +G+ + I SRTDAGVHA +
Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V + K E L H V++ +N +L + DI +T V VP FHAR+ ++
Sbjct: 61 QVANF--------KSDEKLVEHK---VKKYLNQYLPN--DISITSVEEVPDRFHARYNSK 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+TY Y+I + E + F + + HV ++L++ +M++A K LVG HDF++F + + S
Sbjct: 108 AKTYLYKIWN-EEHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKS 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
+R + L VSE A F I
Sbjct: 167 MVREVYTLEVSE---EAGFVQIR------------------------------------- 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
FL++ VR IVG L VG G+L V + IL+ K + +A A GL L V++
Sbjct: 187 VSGNGFLHNMVRKIVGALIEVGLGQLDVEAIPNILEEKQRNQINCLAEASGLYLESVEF 245
>gi|395799337|ref|ZP_10478618.1| tRNA pseudouridine synthase A [Pseudomonas sp. Ag1]
gi|421140449|ref|ZP_15600459.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens BBc6R8]
gi|395336441|gb|EJF68301.1| tRNA pseudouridine synthase A [Pseudomonas sp. Ag1]
gi|404508370|gb|EKA22330.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens BBc6R8]
Length = 274
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 137/316 (43%), Gaps = 81/316 (25%)
Query: 59 RYLIAVEYIGTRFSGSQKQLN-CRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
R + VEY G+R+ G Q+Q + TV LE+A K PVS+ + RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYRGWQRQASGVPTVQETLEKALSKVADSPVSLMCAGRTDAGVHACGQV 67
Query: 118 CHVDVERISKRKP----GEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFR 173
H D + K + PHD SV + + +P+DFHARF+
Sbjct: 68 VHFDTQAERSMKAWVMGANINLPHDVSV-----------------SWAKVMPADFHARFK 110
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEE-------LDLRAMQEACKVLVGCHDFSSF 226
A R Y Y I + ++ R H+ EE LD M EA + LVG HDFS+F
Sbjct: 111 AIARRYRYVIYN--------DQIRPAHLNEEITWNHRPLDAERMAEAAQHLVGIHDFSAF 162
Query: 227 RASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIR 286
RA CQA SPI+ + L V+ +G V I
Sbjct: 163 RAGQCQAKSPIKEVHHLRVTR-----------------------------HGKMIVLDI- 192
Query: 287 KKHRSYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACG 346
RA +FL+H VR I GVL +GTGE V +L+++ A G
Sbjct: 193 ----------RAGAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPFG 242
Query: 347 LSLGFVKY----DLPE 358
L L V+Y +LP+
Sbjct: 243 LYLVDVEYRDEFELPQ 258
>gi|258545708|ref|ZP_05705942.1| tRNA pseudouridine synthase A [Cardiobacterium hominis ATCC 15826]
gi|258519078|gb|EEV87937.1| tRNA pseudouridine synthase A [Cardiobacterium hominis ATCC 15826]
Length = 265
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 135/297 (45%), Gaps = 55/297 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNV 117
RY + +EY GT ++G Q+Q T+ LE A + PV + + RTDAGVHA + V
Sbjct: 4 RYAVGLEYDGTHYAGWQRQPFFAATIQEQLECALSQVAAHPVETTCAGRTDAGVHATAQV 63
Query: 118 CHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
H D + R L N +L + DI + +R VP++FHAR+ A+ER
Sbjct: 64 IHFDTG--AARSDFAWLA---------GANRYLPA--DIRLQWIRAVPAEFHARYSARER 110
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y Y I +P +++ + WH + LD AM A + L+G HDFS+FRA+ CQA SP
Sbjct: 111 HYRYLIRHRAQPSALWARRCHWH-KKSLDAAAMHSAAQALIGEHDFSAFRAAECQAKSPW 169
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
R + SID +R++H V
Sbjct: 170 R------------------------FIRSID----------------VRERHGWIAVDIC 189
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+FL+H VR IVG L AVG G + +L ++ A APA GL V Y
Sbjct: 190 GNAFLHHMVRNIVGTLLAVGDGRRDTAWPGEVLASRDRRCAGVTAPAQGLYFHGVAY 246
>gi|8569326|pdb|1DJ0|A Chain A, The Crystal Structure Of E. Coli Pseudouridine Synthase I
At 1.5 Angstrom Resolution
gi|8569327|pdb|1DJ0|B Chain B, The Crystal Structure Of E. Coli Pseudouridine Synthase I
At 1.5 Angstrom Resolution
Length = 264
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 137/307 (44%), Gaps = 60/307 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ + + +EY G+++ G Q+Q R+V LE+A + +P+++ + RTDAGVH
Sbjct: 3 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 62
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H + + K + VN L GDI V V+ VP DFHARF A
Sbjct: 63 VVHFETTALRK-----------DAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATA 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y I + +V K H E LD M A + L+G +DF+SFRA CQ+ +P
Sbjct: 110 RRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI- 295
R + ++V+ +H Y V+
Sbjct: 169 WRNVMHINVT-----------------------------------------RHGPYVVVD 187
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFV--- 352
+A +F++H VR IVG L VG S + +L AK T A+ A A GL L V
Sbjct: 188 IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 247
Query: 353 -KYDLPE 358
+YDLP+
Sbjct: 248 DRYDLPK 254
>gi|422867082|ref|ZP_16913684.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467]
gi|329577713|gb|EGG59139.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467]
Length = 249
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 134/302 (44%), Gaps = 57/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAAS 115
+ RY + Y G F G QKQ N RTV +E+ + G V++ S RTDAGVHA
Sbjct: 1 MPRYKAIIAYDGAHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60
Query: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H D + +P E + R A++ Q+ DI V V V DFHAR+
Sbjct: 61 QVIHFDY---PQERPLEKM--------RFALD--TQTPEDIAVRSVERVSEDFHARYHVI 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
E+TY +++ G +P S F + A + +DL +Q+A L+G HDF+SF ASG
Sbjct: 108 EKTYQFKVDIG-KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVED 166
Query: 236 PIRTLDE--LHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYE 293
IRT+ E +HV+E F+
Sbjct: 167 KIRTIHEASVHVNETGDELTFT-------------------------------------- 188
Query: 294 VIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
R FLY +R++VG L +G G L + + I+ AK A P A GL L VK
Sbjct: 189 --FRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGLYLAEVK 246
Query: 354 YD 355
Y+
Sbjct: 247 YE 248
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,605,185,125
Number of Sequences: 23463169
Number of extensions: 223917449
Number of successful extensions: 1087157
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3815
Number of HSP's successfully gapped in prelim test: 1142
Number of HSP's that attempted gapping in prelim test: 1068968
Number of HSP's gapped (non-prelim): 9338
length of query: 382
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 238
effective length of database: 8,980,499,031
effective search space: 2137358769378
effective search space used: 2137358769378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)