BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016811
(382 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7IKI9|TRUA_XANP2 tRNA pseudouridine synthase A OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=truA PE=3 SV=1
Length = 245
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 152/296 (51%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY GT ++G Q Q + +TV G L +AF +F G+ V ++ + RTDAGVHA V
Sbjct: 3 RYKLTIEYDGTPYAGWQIQADQQTVQGALAQAFKRFCGEDVHVAGAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD+ R + S VR A+ L+ I V VP F ARF A +R
Sbjct: 63 HVDLSRHWR-----------SDTVRDAMTAQLRPH-PIAVLSAEEVPDSFDARFSATKRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI++ P ++DRAW + ++LD +AM EA + L+G HDFS+FRA+ CQA SP++
Sbjct: 111 YLYRIIN-RRPDLALDRDRAWRIPQKLDAQAMHEAAQRLLGKHDFSTFRAAECQAASPLK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD+L VS G + VI A
Sbjct: 170 TLDQLDVS------------------------------RSGDEI----------RVITSA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+HQVR +VG L VG G + D+E LKA T PMAPA GL L V Y
Sbjct: 190 RSFLHHQVRSMVGSLMRVGEGRWSADDLEAALKAADRTRCGPMAPAAGLYLAAVSY 245
>sp|Q2WAT0|TRUA_MAGSA tRNA pseudouridine synthase A OS=Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264) GN=truA PE=3 SV=1
Length = 256
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 155/298 (52%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT F+G Q+Q +V G+LE+A K G P ++ + RTDAGVHA
Sbjct: 1 MPRYRLLVEYDGTPFNGWQRQDKGLSVQGILEKAVEKLCGVPCTLHAAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V HVD+ R + + VR A+N+ ++ + + V V DFHARF A
Sbjct: 61 VAHVDLPR-----------DYPADTVRDALNYHMKPK-PVAVVAAELVDEDFHARFSAVG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL+ ++ RAW V LD AM E + L+G HDFS+FRAS CQA SP
Sbjct: 109 RAYLYRIVNRRAPLA-LDQHRAWWVPVALDAEAMAEGARRLLGHHDFSTFRASECQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V+ V G + ++A
Sbjct: 168 MKTLDVLDVTRV------------------------------GEEI----------RIVA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG LK VG G+ + D+ ++L+A+ T P APA GL L V Y
Sbjct: 188 EARSFLHHQVRNMVGTLKLVGEGKWSPDDMAKVLEARDRTKGGPTAPAAGLVLTGVSY 245
>sp|A8GU17|TRUA_RICRS tRNA pseudouridine synthase A OS=Rickettsia rickettsii (strain
Sheila Smith) GN=truA PE=3 SV=1
Length = 245
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 155/297 (52%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + + RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGAGRTDAGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F++ + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFVRPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>sp|B0BVL0|TRUA_RICRO tRNA pseudouridine synthase A OS=Rickettsia rickettsii (strain
Iowa) GN=truA PE=3 SV=1
Length = 245
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 155/297 (52%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + + RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGAGRTDAGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F++ + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFVRPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>sp|Q92FZ9|TRUA_RICCN tRNA pseudouridine synthase A OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=truA PE=3 SV=1
Length = 245
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISAPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>sp|C4K2W2|TRUA_RICPU tRNA pseudouridine synthase A OS=Rickettsia peacockii (strain
Rustic) GN=truA PE=3 SV=1
Length = 245
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RYYIYRIINRPCP-SVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>sp|C3PLZ3|TRUA_RICAE tRNA pseudouridine synthase A OS=Rickettsia africae (strain ESF-5)
GN=truA PE=3 SV=1
Length = 245
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + P++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VGVWNCELAPNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ S
Sbjct: 109 RYYIYRIINRPYP-SVIDLNRAWWISSPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSS 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG V ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQVEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>sp|Q6G547|TRUA_BARHE tRNA pseudouridine synthase A OS=Bartonella henselae (strain ATCC
49882 / Houston 1) GN=truA PE=3 SV=1
Length = 247
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 152/297 (51%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q RT+ LE+A F GQ ++I+ + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELRTIQSALEQALFHFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQER 177
HVD E+ + + VR A+N LQ +GD I + V+ VP F ARF A +R
Sbjct: 63 HVDFEKNWR-----------THTVRDALNAHLQKQGDNIAILHVQNVPDSFDARFSAIKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L+ +AM EA + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRRSPPALNTK-RVWWIPKPLNAQAMHEAAQKLVGKHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVQR------------------------------EGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L AK T +AP GL L V+Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTTQDLEAALHAKDRTRCGMVAPPSGLYLTKVEY 247
>sp|A9ILJ7|TRUA_BART1 tRNA pseudouridine synthase A OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=truA PE=3 SV=1
Length = 247
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G+ ++G Q+Q T+ G LE+A +F GQ ++I+ + RTDAGVHA
Sbjct: 1 MSRFKLTLEYDGSNYAGWQRQAKLHTIQGALEQAIFRFSGQQLTITTAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V HVD + PPH VR A+N L+ + + I + +V VP DF ARF A
Sbjct: 61 VAHVDFIK--------NWPPH---TVRDALNALLRQQSEAISILNVENVPDDFDARFSAI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y ++IL+ P ++ K R W + + L+ +AM EA + LVG HDF++FR++ CQA S
Sbjct: 110 KRHYLFKILNRRSPPALNAK-RVWWIPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIRTL+ L + + G +F +
Sbjct: 169 PIRTLERLDIQK------------------------------EGEEIF----------IY 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A+ARSFL+HQ+R G L VG G T D+E L AK +AP GL L V+Y
Sbjct: 189 AKARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGVVAPPSGLYLTKVEY 247
>sp|B0T1S6|TRUA_CAUSK tRNA pseudouridine synthase A OS=Caulobacter sp. (strain K31)
GN=truA PE=3 SV=1
Length = 249
Score = 175 bits (444), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 146/297 (49%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G ++G Q Q + +V G +E A F GQ + I+ + RTD GVHA + V
Sbjct: 3 RYRLTIEYDGRPYNGFQAQASQPSVQGAIEAAVKAFTGQTIRIAAAGRTDTGVHATAQVV 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD+ER P E V A+N L E I V D V D+HARF A ER
Sbjct: 63 HVDLER---DWPAET--------VMNALNAHLVREA-ISVLDAVVVSDDWHARFSANERR 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRIL+ P E+ + WHV + +D AMQ A + LVG HDF++FR CQA SP++
Sbjct: 111 YLYRILNRRAP-PALERGKVWHVKKPIDADAMQTAAQALVGLHDFTTFRDMACQAKSPLK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD VS V G V H +E A
Sbjct: 170 TLDVARVSRV------------------------------GDEV------HLVFE----A 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RSFL+ QVR + G L VG G T DV L+A+ TA P+APA GL L V Y+
Sbjct: 190 RSFLHRQVRSMTGTLAEVGVGRWTADDVMAALEARDRTACGPVAPADGLYLTGVGYE 246
>sp|B0UP40|TRUA_METS4 tRNA pseudouridine synthase A OS=Methylobacterium sp. (strain 4-46)
GN=truA PE=3 SV=1
Length = 250
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 148/301 (49%), Gaps = 53/301 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G+ F+G Q+Q RTV LEEA +F G PV + + RTDAGVHA
Sbjct: 1 MPRYKLVVEYDGSGFAGWQRQAADRTVQQALEEAIARFAGAPVRVHCAGRTDAGVHATHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D++R + + VR A N L+ E +V+ R P DF AR A
Sbjct: 61 VVHLDLDRDWR-----------TDTVRDASNAHLRPEPVAVVSAERVRP-DFDARHSALR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + WHV LD AM A + L+G HDFS+FRA+ CQANSP
Sbjct: 109 RHYRYRILNRRSP-PALGRAYLWHVPWSLDAHAMHAAAQTLLGRHDFSAFRAAECQANSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD+L V+ + G + V
Sbjct: 168 VRTLDQLDVARI------------------------------GDEIL----------VAT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L G G L + V +L ++ T P+APA GL+L V Y
Sbjct: 188 SARSFLHHQVRGMVGTLMLAGCGRLDAAGVRAVLDSRDRTRCGPLAPAAGLTLTGVDYPE 247
Query: 357 P 357
P
Sbjct: 248 P 248
>sp|Q98D55|TRUA_RHILO tRNA pseudouridine synthase A OS=Rhizobium loti (strain MAFF303099)
GN=truA PE=3 SV=1
Length = 248
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 156/297 (52%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ F+G Q Q + +V +E+A KF G+ V + + RTDAGVHA++ V
Sbjct: 3 RFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAVRLRAAGRTDAGVHASAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD ++K PG+ VR AVN LQ+ G + + VP DF ARF A R
Sbjct: 63 HVD---LAKPWPGDK--------VRDAVNAHLQAAGAHVAILKAAIVPDDFDARFSATGR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRIL+ P + EK + W V + LD AM EA K+L+G HDF++FR++ CQANSP+
Sbjct: 112 HYLYRILNRRAP-AALEKGKVWWVPKRLDAGAMHEAAKLLLGRHDFTTFRSTQCQANSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L VS G + EV A
Sbjct: 171 RTLERLDVSRA------------------------------GDMI----------EVRAS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL++QVR +VG LK VG G T ++++ L+A+ A +AP GL L V Y
Sbjct: 191 ARSFLHNQVRSMVGSLKRVGDGGWTEAELKAALEARDRAACGQVAPPDGLFLIGVDY 247
>sp|A7HPQ3|TRUA_PARL1 tRNA pseudouridine synthase A OS=Parvibaculum lavamentivorans
(strain DS-1 / DSM 13023 / NCIMB 13966) GN=truA PE=3
SV=1
Length = 246
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 147/297 (49%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY G+ F G Q Q N R+V VLEE F GQ + I + RTDAGVHA V
Sbjct: 3 RYKLTIEYDGSPFVGWQAQTNGRSVQQVLEEGIKGFCGQELKIFGAGRTDAGVHALGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
HVD E P +R AVN ++ + + + VP F ARF A +R
Sbjct: 63 HVDFE-----------TPVAPDTLRDAVNAHMRPH-PVAIVEAEEVPDSFEARFSAVKRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI++ PL++ ++ +AW V + LD AM +A + LVG HDF++FR+ CQA SP++
Sbjct: 111 YMYRIVNRRAPLTL-DRGQAWLVHKTLDADAMHDAAQALVGNHDFTTFRSVQCQAKSPVK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
T+DE+ VS E++ RA
Sbjct: 170 TVDEISVSRYAD----------------------------------------EIEIVCRA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
RSFL++QVR VG LK VG G T VE+ L AK A P+AP GL L V Y+
Sbjct: 190 RSFLHNQVRSFVGTLKMVGDGSWTRRKVEKALAAKDRAACGPVAPPDGLYLLQVDYE 246
>sp|Q4UJT2|TRUA_RICFE tRNA pseudouridine synthase A OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=truA PE=3 SV=1
Length = 245
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 152/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVISVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + + V + ++FHARF A
Sbjct: 61 VAHFDLSK--------HLEPHK---IITAINYFARPYA-VGVWNCELASNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ MQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RHYIYRIINRPYP-SVIDLNRAWWISSPLDVLTMQKAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA P APA GL FVK
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNVWQAEQIKDVLEAKDRKAAGPTAPASGLY--FVK 242
>sp|A8GQ80|TRUA_RICAH tRNA pseudouridine synthase A OS=Rickettsia akari (strain Hartford)
GN=truA PE=3 SV=1
Length = 245
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 152/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L PH + A+N+F + ++V V +DFHARF A
Sbjct: 61 VAHFDLSK--------YLEPHK---IITAINYFARPYA-VVVWHCAIVLNDFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RHYIYRIINRPYP-SVIDLNRAWWISSPLDVLAMQKAAAYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ + D KL +
Sbjct: 168 IKTLTELNIVKG-------------------DEEIKLYLS-------------------- 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL+H VR IVG L VG ++ +L+AK AA APA GL FVK
Sbjct: 189 -APSFLHHMVRNIVGSLVLVGKNIWQAEHIKDVLEAKDRKAAGLTAPAYGLY--FVK 242
>sp|Q60CV4|TRUA_BRUSU tRNA pseudouridine synthase A OS=Brucella suis biovar 1 (strain
1330) GN=truA PE=3 SV=1
Length = 251
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V G +E+AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ I + +V F ARF A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V ++LD AM EA + L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MVEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLVGVDYAFP 250
>sp|A9WW43|TRUA_BRUSI tRNA pseudouridine synthase A OS=Brucella suis (strain ATCC 23445 /
NCTC 10510) GN=truA PE=3 SV=1
Length = 251
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V G +E+AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ I + +V F ARF A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V ++LD AM EA + L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MVEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLVGVDYAFP 250
>sp|A5VVT9|TRUA_BRUO2 tRNA pseudouridine synthase A OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=truA PE=3 SV=1
Length = 251
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V G +E+AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ I + +V F ARF A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V ++LD AM EA + L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MVEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLVGVDYAFP 250
>sp|Q8YDB2|TRUA_BRUME tRNA pseudouridine synthase A OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=truA PE=3 SV=1
Length = 251
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V G +E+AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ I + +V F ARF A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V ++LD AM EA + L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MVEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLVGVDYAFP 250
>sp|C0RMH2|TRUA_BRUMB tRNA pseudouridine synthase A OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=truA PE=3 SV=1
Length = 251
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V G +E+AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ I + +V F ARF A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V ++LD AM EA + L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MVEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLVGVDYAFP 250
>sp|A9MCV8|TRUA_BRUC2 tRNA pseudouridine synthase A OS=Brucella canis (strain ATCC 23365
/ NCTC 10854) GN=truA PE=3 SV=1
Length = 251
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V G +E+AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ I + +V F ARF A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V ++LD AM EA + L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MVEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLVGVDYAFP 250
>sp|Q576T1|TRUA_BRUAB tRNA pseudouridine synthase A OS=Brucella abortus biovar 1 (strain
9-941) GN=truA PE=3 SV=1
Length = 251
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V G +E+AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ I + +V F ARF A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V ++LD AM EA + L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MVEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLVGVDYAFP 250
>sp|Q2YJQ4|TRUA_BRUA2 tRNA pseudouridine synthase A OS=Brucella abortus (strain 2308)
GN=truA PE=3 SV=1
Length = 251
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V G +E+AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ I + +V F ARF A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V ++LD AM EA + L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V+ NG E+
Sbjct: 171 KTLDRLDVTR-----------------------------NGD-----------MVEMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+A+ A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGLYLVGVDYAFP 250
>sp|Q168C1|TRUA_ROSDO tRNA pseudouridine synthase A OS=Roseobacter denitrificans (strain
ATCC 33942 / OCh 114) GN=truA PE=3 SV=1
Length = 260
Score = 172 bits (436), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 153/301 (50%), Gaps = 49/301 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F G Q+Q T+ G +E A K P +I+ + RTDAGVHA +
Sbjct: 1 MHRYALKVEYNGAPFVGWQRQKEHPTIQGAIERALGKIAPGPHTIAAAGRTDAGVHAIAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ER D + A+N+ L+ I +T V +++HARF A++
Sbjct: 61 VAHCDLER-----------DWDPFRLSEALNYHLKP-APIAITACTAVDAEWHARFSARQ 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +RIL P + +K W V ++LD+ AM+EA +L+G HDF++FR++ CQA SP
Sbjct: 109 RQYLFRILCRRAP-ATHQKGLVWQVKQKLDVTAMREAAALLIGQHDFTTFRSTICQAESP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLD L V+EV D+P +G R
Sbjct: 168 VKTLDRLDVNEV-----------DTP--------------------YG-----REIHFDV 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G T DV R L + A P+ P GL L V YD
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPPHGLYLAHVVYDR 251
Query: 357 P 357
P
Sbjct: 252 P 252
>sp|Q68VQ6|TRUA_RICTY tRNA pseudouridine synthase A OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=truA PE=3 SV=1
Length = 245
Score = 172 bits (436), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT FSG Q+Q +V +LEEA +KF G+ V++ S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTHFSGWQRQAGVLSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H D+ + L P+ + +A+N+F++ + V + V ++FHARF A
Sbjct: 61 IAHFDLSK--------YLEPYK---IIKAINYFVRPYA-VGVWNCELVSNNFHARFSATS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P SV + +R W ++ LD+ AMQ+A L+G HDF+SFR+S CQ+ SP
Sbjct: 109 RHYIYRIVNRTYP-SVIDLNRVWWISAPLDVLAMQQAATYLLGKHDFTSFRSSSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL E++ I K++ ++
Sbjct: 168 IKTLTEIN----------------------------------------IIKEYEEIKLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL++ VR IVG L VG V ++ +L AK A P APA GL F+K
Sbjct: 188 SAPSFLHYMVRNIVGSLVLVGKNIWQVEQIKNVLDAKDRKVAGPTAPAFGLY--FIK 242
>sp|A8F079|TRUA_RICCK tRNA pseudouridine synthase A OS=Rickettsia canadensis (strain
McKiel) GN=truA PE=3 SV=1
Length = 245
Score = 172 bits (435), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 148/291 (50%), Gaps = 53/291 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT +G Q+Q +V +LEEA +KF G+ V + S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGIMSVQQILEEAIYKFSGEQVVLFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L H + A+N+F + ++V + P++FHARF A
Sbjct: 61 VAHFDLSK--------NLETHK---IITAINYFARPY-SVIVWNCEMAPNNFHARFSAVS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P SV +DR W ++ LD+ AMQ+A L+G HDF+SFRAS CQ+ SP
Sbjct: 109 RHYIYRILNRPYS-SVINRDRVWWISSPLDVLAMQKAATYLLGKHDFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL EL++ I +D + ++
Sbjct: 168 IKTLTELNI-----------IKEDEEI-----------------------------KLYL 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGL 347
A SFL+H VR IVG L VG ++ +L+ K AA P APA GL
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNVWQAEYIKELLEVKDRKAAGPTAPASGL 238
>sp|B9JQX0|TRUA_AGRVS tRNA pseudouridine synthase A OS=Agrobacterium vitis (strain S4 /
ATCC BAA-846) GN=truA PE=3 SV=1
Length = 259
Score = 172 bits (435), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 155/304 (50%), Gaps = 55/304 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT + G Q+Q N +V G LE A G+ V+I + RTD+GVHA+
Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQDNGPSVQGALEAAVLGLTGETVAIRGAGRTDSGVHASGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V HVD+ R + +P +R A+N H Q+ I + VP F ARF A
Sbjct: 61 VAHVDLLR-------QWIP----YKLRNALNAHLAQAGQAISILAAEAVPDAFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y YRI+S P L++ E +RAW V++ LD AM A ++LVG HDF++FR+ CQA S
Sbjct: 110 KRHYLYRIMSRPSRLAL-EANRAWWVSKPLDHEAMHAAAQMLVGNHDFTTFRSVHCQAIS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L VS N D E+
Sbjct: 169 PVRTLDRLDVSR----------NGD------------------------------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G++T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ASAQSFLHNQIRSFAGTLKMAGEGKMTPEDVRAALEARDRKACGPVAPPQGLY--FLQVD 246
Query: 356 LPED 359
P D
Sbjct: 247 YPTD 250
>sp|B2IEW0|TRUA_BEII9 tRNA pseudouridine synthase A OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=truA PE=3
SV=1
Length = 260
Score = 171 bits (433), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 154/310 (49%), Gaps = 55/310 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G F G Q+Q N +V V+E A G PV I + RTDAGVHA++
Sbjct: 1 MPRYKLTVEYDGASFVGWQRQKNGLSVQEVIETALLAINGAPVGIRGAGRTDAGVHASAQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R E P V+R A+N ++ + V VP F ARF A
Sbjct: 61 VAHADLAR-------EWRP----DVLRDALNAHMRP-ALVAVVAAEPVPETFDARFSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ PL+ FE RAW V LD RAM EA +VL G HDFS+FRA+ CQA SP
Sbjct: 109 RHYLYRIINRRAPLT-FEAGRAWLVKRRLDARAMHEAAQVLTGRHDFSTFRAAECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IRTL+ L V V G + E+ A
Sbjct: 168 IRTLERLDVQAV------------------------------GDLI----------EIRA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
ARSFL+HQVR +VG L+ VG+G+ + D+ L+A +APA GL L V Y
Sbjct: 188 SARSFLHHQVRSMVGSLEMVGSGKWSAGDLRAALEACDRRRCGMVAPAAGLYLTGVDY-- 245
Query: 357 PEDDQTDAAE 366
PE+ + A+
Sbjct: 246 PEEGEEKGAQ 255
>sp|Q2RNZ9|TRUA_RHORT tRNA pseudouridine synthase A OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=truA PE=3 SV=1
Length = 278
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 154/315 (48%), Gaps = 56/315 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY G + G Q+Q N T+ LEEA + G + S RTD+GVHA V
Sbjct: 3 RYRLTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATRVHGSGRTDSGVHALGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H+D+ R + ++ V +A+N L+ + I V D V DFHARF A+ER+
Sbjct: 63 HLDLPRA-----------YGAATVMKALNAHLRPQ-PIAVIDAAEVAEDFHARFSAEERS 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRIL+ P ++ R W V ++ M EA +VLVG HDFSSFRA+ CQA+SP++
Sbjct: 111 YRYRILNRIAP-PTLDQGRVWWVARPMEAAIMDEAAQVLVGRHDFSSFRAAECQADSPVK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TL EL V+ V G + V ARA
Sbjct: 170 TLSELRVTRV------------------------------GDEI----------HVFARA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPE 358
RSFL+HQVR +VG L VG G T + L+A +AA P AP GL F++ P
Sbjct: 190 RSFLHHQVRNMVGTLALVGDGRWTADRLRAALEACDRSAAGPTAPPDGLY--FLRVRFPG 247
Query: 359 DDQTDA-AESLETCP 372
+ A A LE P
Sbjct: 248 ETAAPAKAGPLEAAP 262
>sp|Q9ZCA3|TRUA_RICPR tRNA pseudouridine synthase A OS=Rickettsia prowazekii (strain
Madrid E) GN=truA PE=3 SV=2
Length = 245
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 154/297 (51%), Gaps = 55/297 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY+GT F+G Q+Q +V +LEEA +KF + V++ S RTDAGVHA
Sbjct: 1 MYRYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ + L P+ + +A+N+F++ D+ V + V ++FHARF A
Sbjct: 61 VAHFDLSK--------YLEPYK---IIKAINYFVRPY-DVGVWNCELVSNNFHARFSAIS 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRI++ P SV + +RAW ++ LD+ AMQ+A L+G HDF+SFR+S CQ+ SP
Sbjct: 109 RHYIYRIINRTYP-SVIDFNRAWWISSPLDILAMQKAAAYLLGKHDFTSFRSSSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL E++ I K++ ++
Sbjct: 168 IKTLTEIN----------------------------------------IIKEYEEIKLYI 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVK 353
A SFL++ VR IVG L VG ++ +L A+ A P APA GL F+K
Sbjct: 188 SAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLY--FIK 242
>sp|Q1RKH3|TRUA_RICBR tRNA pseudouridine synthase A OS=Rickettsia bellii (strain
RML369-C) GN=truA PE=3 SV=1
Length = 245
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 154/299 (51%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I+VEY+GT +G Q+Q +V +LEEA +KF G+ V++ S RTDAGVHA
Sbjct: 1 MYRYKISVEYLGTNLAGWQRQSGVMSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H D+ + P+ + RA+N+F + + V + V ++FHARF A
Sbjct: 61 IAHFDLSK--------YFEPYK---IIRAINYFTRPY-IVGVCNCELVDNNFHARFSAIA 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P P SV + DR W ++ LD+ AMQ++ L+G H+F+SFRAS CQ+ SP
Sbjct: 109 RHYVYRILNRPYP-SVIDFDRVWWISVPLDVSAMQKSSLYLLGKHNFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL +L I K++ ++
Sbjct: 168 IKTLTKL----------------------------------------DIIKENEEIKLYF 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A SFL+H VR IVG L VG ++++L+ AA P APACGL F+K D
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQMQQVLEVADRKAAGPTAPACGLY--FIKAD 244
>sp|A8GUM4|TRUA_RICB8 tRNA pseudouridine synthase A OS=Rickettsia bellii (strain OSU
85-389) GN=truA PE=3 SV=1
Length = 245
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 154/299 (51%), Gaps = 55/299 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I+VEY+GT +G Q+Q +V +LEEA +KF G+ V++ S RTDAGVHA
Sbjct: 1 MYRYKISVEYLGTNLAGWQRQSGVMSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
+ H D+ + P+ + RA+N+F + + V + V ++FHARF A
Sbjct: 61 IAHFDLSK--------YFEPYK---IIRAINYFTRPY-IVGVCNCELVDNNFHARFSAIA 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P P SV + DR W ++ LD+ AMQ++ L+G H+F+SFRAS CQ+ SP
Sbjct: 109 RHYVYRILNRPYP-SVIDFDRVWWISVPLDVSAMQKSSLYLLGKHNFTSFRASSCQSKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
I+TL +L I K++ ++
Sbjct: 168 IKTLTKL----------------------------------------DIIKENEEIKLYF 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A SFL+H VR IVG L VG ++++L+ AA P APACGL F+K D
Sbjct: 188 SAPSFLHHMVRNIVGSLVLVGKNIWQAEQMQQVLEVADRKAAGPTAPACGLY--FIKAD 244
>sp|A6WYK9|TRUA_OCHA4 tRNA pseudouridine synthase A OS=Ochrobactrum anthropi (strain ATCC
49188 / DSM 6882 / NCTC 12168) GN=truA PE=3 SV=1
Length = 251
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 148/300 (49%), Gaps = 53/300 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + VEY GT + G Q+Q N V +E AF KF G+ +++S + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQNAIELAFKKFCGEDLTLSAAGRTDAGVHATAQVV 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVN-HFLQSEGDIMVTDVRCVPSDFHARFRAQER 177
HVD+ + + VR AVN H + ++ + + +V F ARF A+ R
Sbjct: 63 HVDLTK-----------DWGAGKVRDAVNAHLVMADERVSILNVERTTDTFDARFSARAR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y YRI + PL+V + RAW V + LD AM EA K L+G HDF++FRA+ CQA SP+
Sbjct: 112 HYLYRIHNRRAPLAV-DYQRAWWVQKRLDAEAMHEAAKRLLGEHDFTTFRATQCQAKSPV 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
+TLD L V I N + E+
Sbjct: 171 KTLDRLDV---------------------IRNGDYV-------------------EMRVS 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLP 357
ARSFL++QVR G L VG G T D++ L+AK A +AP GL L V Y P
Sbjct: 191 ARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAKDRKACGQVAPPYGLYLIGVDYAFP 250
>sp|Q6G1G9|TRUA_BARQU tRNA pseudouridine synthase A OS=Bartonella quintana (strain
Toulouse) GN=truA PE=3 SV=1
Length = 247
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 149/297 (50%), Gaps = 53/297 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
R+ + +EY G+ ++G Q+Q T+ LE+A F GQ ++ + + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELHTIQSALEQAIFHFSGQQLTTTTAGRTDAGVHATGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEG-DIMVTDVRCVPSDFHARFRAQER 177
HVD + + VR A+N +LQ +G +I V +V+ VP +F ARF A +R
Sbjct: 63 HVD-----------FIKNWQTYTVRDALNAYLQKQGEEIAVLNVQNVPDNFDARFSAIKR 111
Query: 178 TYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPI 237
Y ++IL+ P ++ K R W + + L++ AM +A + LVG HDF++FR++ CQA SPI
Sbjct: 112 HYLFKILNRLSPPALNIK-RVWWIPKPLNVDAMHQAAQKLVGQHDFTTFRSAHCQAKSPI 170
Query: 238 RTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIAR 297
RTL+ L V G +F + A+
Sbjct: 171 RTLERLDVYR------------------------------EGEEIF----------LYAQ 190
Query: 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQ+R G L VG G T D+E L AK +AP GL L V Y
Sbjct: 191 ARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGMVAPPSGLYLTQVDY 247
>sp|B6IPI0|TRUA_RHOCS tRNA pseudouridine synthase A OS=Rhodospirillum centenum (strain
ATCC 51521 / SW) GN=truA PE=3 SV=1
Length = 245
Score = 164 bits (416), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 140/278 (50%), Gaps = 53/278 (19%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+QR+ + +EY G F G Q+Q N +V LEEA ++F + V++ + RTDAGVHA +
Sbjct: 1 MQRWKLTLEYDGRPFVGWQRQDNGPSVQQALEEAIYRFTQETVTVFCAGRTDAGVHALAM 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V VD+ R + + V+ A+N L+ + V V V DFHARF
Sbjct: 61 VASVDLAREAT-----------ADKVQAALNFHLKPH-PVAVLRVEPVAPDFHARFSCLG 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + E R WHV LD AM EA + LVG HDFSSFRAS CQA SP
Sbjct: 109 RAYLYRILNRRAP-AALEAGRVWHVQGGLDAEAMHEAAQRLVGQHDFSSFRASLCQAKSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TL +L V+ V G V ++A
Sbjct: 168 VKTLSDLSVARV------------------------------GEEV----------RIVA 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKT 334
RARSFL+HQVR +VG LK VG G T DV R L A+
Sbjct: 188 RARSFLHHQVRNMVGTLKLVGEGRWTADDVSRALAARN 225
>sp|Q2GF33|TRUA_NEOSM tRNA pseudouridine synthase A OS=Neorickettsia sennetsu (strain
Miyayama) GN=truA PE=3 SV=1
Length = 243
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 152/296 (51%), Gaps = 54/296 (18%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY VEY+GT FSG QKQ++ +V LE + + ++++++ RTDAGVHA V
Sbjct: 2 RYKAIVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQVF 61
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H D R S +P +++ AVN+ L+ E I++ + V F ARF A R
Sbjct: 62 HFDA-RESTLQPFQIV---------NAVNYHLK-EKLIVLLKIEIVDETFDARFSAIRRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y Y+I + PL+VF K+R+WHV + L+L ++E + LVG HDF SFR+S C A++ IR
Sbjct: 111 YQYKITNRKTPLAVF-KNRSWHVPQTLNLDLIREQAQYLVGKHDFQSFRSSKCGASNAIR 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD L V + NG +F A A
Sbjct: 170 TLDRLEVEK-----------------------------NGEEMIFH-----------ASA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
+SFL+HQVR++VG L A+ +G+L V IL K A P AP CGL L V Y
Sbjct: 190 KSFLHHQVRIMVGTLVAIASGKLM--SVTEILSKKNRRYAGPTAPPCGLYLLKVDY 243
>sp|A1UUB6|TRUA_BARBK tRNA pseudouridine synthase A OS=Bartonella bacilliformis (strain
ATCC 35685 / KC583) GN=truA PE=3 SV=1
Length = 247
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 148/299 (49%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + +EY G+ ++G Q+Q RTV G +E+A F GQ ++I+ + RTDAGVHA
Sbjct: 1 MARFKLTLEYDGSNYAGWQRQAELRTVQGAVEQAIFHFSGQQLTITTAGRTDAGVHATGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V HVD E K V + + A+N L+ +GD I + +V +P F AR A
Sbjct: 61 VAHVDFE-----KDWHV------NTIHNALNAHLRQQGDNIAILNVENIPDSFDARLSAV 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
+R Y ++IL+ P ++ K R W + L+ AM +A + LVG HDF++FR++ CQA S
Sbjct: 110 KRHYLFKILNRRAPPALNAK-RVWWLPRPLNADAMHKAAQKLVGKHDFTTFRSAHCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
PIRTL+ L V G +F +
Sbjct: 169 PIRTLECLDVQR------------------------------EGEEIF----------LY 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARARSFL+HQ+R G L VG G T D+E L AK +AP GL L V Y
Sbjct: 189 ARARSFLHHQIRSFAGSLMEVGIGRWTAQDLEEALHAKDRARCGMVAPPSGLYLTQVDY 247
>sp|Q11LD0|TRUA_MESSB tRNA pseudouridine synthase A OS=Mesorhizobium sp. (strain BNC1)
GN=truA PE=3 SV=1
Length = 247
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 149/299 (49%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ I +EY G ++G Q+Q +V +E+A F G+ V+I + RTDAGVHA
Sbjct: 1 MHRFRIDIEYDGGPYAGWQRQAGQHSVQEAIEKAIAAFSGEEVTIRGAGRTDAGVHALGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ R K S VR A+N L G+ + + V DF ARF A+
Sbjct: 61 VAHFDLSREWK-----------SDKVRDALNAHLTLAGEAVSILRAEAVAEDFDARFSAK 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI + PL++ E+ RAWHV LD AM EA + LVG HDF++FR+ CQA S
Sbjct: 110 ARHYLYRIANRRSPLAL-ERGRAWHVARRLDAAAMHEAAQRLVGKHDFTTFRSVQCQAKS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P++TLD L V+ V G + E+
Sbjct: 169 PVKTLDRLDVTRV------------------------------GDEI----------EIH 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A ARSFL++QVR +VG LK VG G T D + L+A+ A P+AP GL L V Y
Sbjct: 189 ASARSFLHNQVRSLVGTLKKVGEGGWTADDAQAALQARDRAACGPVAPPQGLYLVRVDY 247
>sp|Q92SH4|TRUA_RHIME tRNA pseudouridine synthase A OS=Rhizobium meliloti (strain 1021)
GN=truA PE=3 SV=1
Length = 247
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 150/299 (50%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G+ + G Q+Q N +V G +E+A + VSI + RTD+GVHA
Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H+D+ R K S ++ A+N L G+ + + DV P DF ARF A
Sbjct: 61 VAHLDLTREWK-----------SYTLQNALNAHLALAGERVSILDVAEAPGDFDARFSAI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E RAW V + LD AM EA + LVG HDF++FR++ CQA S
Sbjct: 110 RRHYLYRIISRRSPLAL-EARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ G + E+
Sbjct: 169 PLRTLDRLDVTRA------------------------------GELI----------EIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A A+SFL++Q+R G LK VG G+ T D++ L+A+ A P+AP GL V Y
Sbjct: 189 ATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALEARDRKACGPVAPPDGLYFMRVDY 247
>sp|Q5LNR0|TRUA_RUEPO tRNA pseudouridine synthase A OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=truA PE=3 SV=1
Length = 262
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 147/301 (48%), Gaps = 49/301 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY+GT F+G Q+Q + +V G +E A + P +I+ + RTDAGVH
Sbjct: 1 MPRYALKVEYLGTPFAGWQRQKDLPSVQGAIETALARLEPGPHTIAAAGRTDAGVHGLGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H D+ R D + A+N+ L+ + + +T V D+HARF A E
Sbjct: 61 VAHCDLTR-----------DWDPFRLSEALNYHLKPQ-PVAITAAARVAEDWHARFSATE 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y +R+L P + + W V LD RAMQ A +L+G HDF++FR+S CQA SP
Sbjct: 109 RQYLFRLLMRRAP-ATHDAGLVWQVGHRLDARAMQAAADLLLGRHDFTTFRSSICQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
++TLDEL V V S FS G F +
Sbjct: 168 VKTLDELRVEAVES---FS----------------------GPEIRFHV----------- 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356
RARSFL++QVR VG L+ VG G DV L+A+ A P+ P GL L V Y
Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWAPEDVRSALEARDRAACGPVCPPQGLYLARVGYPE 251
Query: 357 P 357
P
Sbjct: 252 P 252
>sp|Q0ASJ7|TRUA_MARMM tRNA pseudouridine synthase A OS=Maricaulis maris (strain MCS10)
GN=truA PE=3 SV=1
Length = 249
Score = 161 bits (408), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 150/302 (49%), Gaps = 55/302 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY I +EY G FSG Q+Q N +V LE A K G PV + + RTD+GVHA +
Sbjct: 1 MPRYRITIEYDGRPFSGWQRQDNAPSVQESLERAAEKLDGAPVLVYGAGRTDSGVHALAQ 60
Query: 117 VCHVDVER-ISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQ 175
V H+D+ + +S K VR A+N+ L+ + + V + V DFHARF A
Sbjct: 61 VAHLDLAKDLSTDK------------VRDAINYHLKPD-PVAVIEAARVSDDFHARFSAT 107
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YR++ PL++ ++ + W VT +LD AM A + L+G HDF++FR + CQA S
Sbjct: 108 RRHYLYRMIDRRAPLTL-DRGQVWRVTRKLDAEAMHHAAQALLGQHDFTTFRDAQCQAES 166
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+++LD + VS G V ++
Sbjct: 167 PVKSLDAISVSRY------------------------------GEEV----------QLT 186
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+ QVR +VG L VG G+ + D +R L A + P+APA GL L V Y
Sbjct: 187 CSARSFLHRQVRSMVGSLVEVGVGKWSARDFKRALDAADRSRCGPVAPADGLYLTAVDYP 246
Query: 356 LP 357
P
Sbjct: 247 GP 248
>sp|Q8N0Z8|PUSL1_HUMAN tRNA pseudouridine synthase-like 1 OS=Homo sapiens GN=PUSL1 PE=1
SV=1
Length = 303
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 163/306 (53%), Gaps = 44/306 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGV---LEEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ +Y+GT F+G + VGV LEEA + +PV ++SSRTDAGVHA
Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+DV+R S R PP V+ A+N L+ I V VPSDFHAR A
Sbjct: 73 SNAAHLDVQRRSGR------PPFPPEVLAEALNTHLRHPA-IRVLRAFRVPSDFHARHAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHVTEE-LDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G + L VFE++ W + + LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
SP+RTL + VS Q SP+++ ++ +K R
Sbjct: 186 SPVPSPVRTLRRVSVSP----------GQASPLVTPEES-----------------RKLR 218
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 219 FWNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLF 278
Query: 349 LGFVKY 354
L V Y
Sbjct: 279 LKSVLY 284
>sp|B1M6N9|TRUA_METRJ tRNA pseudouridine synthase A OS=Methylobacterium radiotolerans
(strain ATCC 27329 / DSM 1819 / JCM 2831) GN=truA PE=3
SV=1
Length = 253
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 144/299 (48%), Gaps = 49/299 (16%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G+ F G Q+Q + TV G +E A +F G+ ++ + RTDAGVHA
Sbjct: 1 MPRYKLVIEYDGSPFCGWQRQADDPTVQGAIEAAVTRFSGENARLTCAGRTDAGVHAIHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ + + + VR A+N L+ + + + VP F AR A
Sbjct: 61 VAHLDLAKDWR-----------TDTVRDALNAHLRPQ-PVAILSAETVPDSFDARHSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + + WHV LD M +A + LVG HDFS+FRA+ CQANSP
Sbjct: 109 RHYRYRILNRRSP-AALTRAHVWHVPWPLDADLMHDAAQRLVGRHDFSAFRAAECQANSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
IRTL++L V+ +P+ H V
Sbjct: 168 IRTLEQLDVAR-------------APM-----------------------ALHDEIVVAT 191
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR +VG L G L DV IL + + P+APA GL+ V YD
Sbjct: 192 AARSFLHHQVRAMVGTLMLAGCRRLAADDVAEILASGDKSRCGPLAPAAGLTFVGVDYD 250
>sp|B5ZN21|TRUA_RHILW tRNA pseudouridine synthase A OS=Rhizobium leguminosarum bv.
trifolii (strain WSM2304) GN=truA PE=3 SV=1
Length = 268
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 151/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY G + G Q+Q N +V G +E A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H D+ + P+ ++ A+N L+ G+ + + DV V F ARF A
Sbjct: 61 VIHADLSK--------AWSPYQ---LQNALNAHLRLAGERVSILDVEAVAEFFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E +AW V + LD M A + LVG HDFS+FRA+ CQANS
Sbjct: 110 RRHYLYRIVSRRAPLAL-EAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ S +L E+
Sbjct: 169 PVRTLDRLDVTR----------------------SGEL------------------IEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G+ T DVE L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLY--FLQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>sp|B8IFQ2|TRUA_METNO tRNA pseudouridine synthase A OS=Methylobacterium nodulans (strain
ORS2060 / LMG 21967) GN=truA PE=3 SV=1
Length = 254
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 148/298 (49%), Gaps = 53/298 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY GT F+G Q+Q RTV LEEA +F+ +PV + + RTDAGVHA+
Sbjct: 1 MPRYKLVVEYDGTAFAGWQRQAADRTVQQALEEAIERFVNRPVRVHCAGRTDAGVHASHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D++R + + VR A N L+ E +++ R P DF AR A +
Sbjct: 61 VVHLDLDREWR-----------TDTVRDATNAHLRPEPVSVLSAARVGP-DFDARHSALK 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + WHV LD AM A + L+G HDFS+FRA+ CQA+SP
Sbjct: 109 RHYRYRILNRRSP-PALARGYVWHVPWALDAAAMHAAAQTLLGRHDFSAFRAAECQASSP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTLD+L V G + V
Sbjct: 168 LRTLDQLDVERR------------------------------GDEIL----------VAT 187
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
ARSFL+HQVR +VG L G+G L + V +L ++ P+APA GL+L V Y
Sbjct: 188 SARSFLHHQVRGMVGTLMLAGSGRLDTAGVRAVLDSRDRARCGPLAPAAGLTLTGVDY 245
>sp|Q8UIC9|TRUA_AGRT5 tRNA pseudouridine synthase A OS=Agrobacterium tumefaciens (strain
C58 / ATCC 33970) GN=truA PE=3 SV=1
Length = 266
Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 150/303 (49%), Gaps = 55/303 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ R+ + VEY GT + G Q+Q N +V G LE A G+ VSI + RTD+GVHA
Sbjct: 1 MPRFRMTVEYDGTPYYGWQRQENGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPS-DFHARFRAQ 175
V H+D+ R + P+ +R A+N L G+ + + DF ARF A
Sbjct: 61 VAHIDLSRDWE--------PYK---LRNALNAHLAMAGEAVAVLDAAAVTEDFDARFSAL 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+ L++ E RAW V+++LD M EA ++LVG HDF++FR+ CQANS
Sbjct: 110 RRHYLYRIICRKSRLAL-EHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RTLD L V+ NG E+
Sbjct: 169 PVRTLDRLDVTR-----------------------------NGD-----------LIEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
A A+SFL++Q+R G LK G G +T DV L+A+ A P+AP GL F++ D
Sbjct: 189 ATAQSFLHNQIRSFAGTLKLAGEGGMTPDDVRAALEARDRKACGPVAPPDGLY--FMQVD 246
Query: 356 LPE 358
P+
Sbjct: 247 YPD 249
>sp|C3MF26|TRUA_RHISN tRNA pseudouridine synthase A OS=Rhizobium sp. (strain NGR234)
GN=truA PE=3 SV=1
Length = 247
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 152/299 (50%), Gaps = 53/299 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + VEY G+ + G Q+Q N +V G +E+A G+ VSI + RTD+GVHA
Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQENGPSVQGAIEKAVLSLTGETVSIRGAGRTDSGVHAMGQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD-IMVTDVRCVPSDFHARFRAQ 175
V H+D+ R K + +R A+N L + + + D VP +F ARF A
Sbjct: 61 VAHLDLTREWK-----------THTLRNALNAHLALAAERVSILDAAEVPPEFDARFSAI 109
Query: 176 ERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANS 235
R Y YRI+S PL++ E RAW V + LD AM EA + LVG HDF++FR++ CQANS
Sbjct: 110 RRHYLYRIISRRSPLAL-EARRAWWVPKTLDHEAMHEAAQHLVGHHDFTTFRSAHCQANS 168
Query: 236 PIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295
P+RT+D L V+ S +L E+
Sbjct: 169 PLRTIDRLDVT----------------------RSGEL------------------IEIR 188
Query: 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
A A+SFL++Q+R G LK VG G+ T D++ L+A+ A P+AP GL V Y
Sbjct: 189 ATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLKTALEARDRKACGPVAPPEGLFFMQVDY 247
>sp|B6JJP6|TRUA_OLICO tRNA pseudouridine synthase A OS=Oligotropha carboxidovorans
(strain ATCC 49405 / DSM 1227 / OM5) GN=truA PE=3 SV=1
Length = 245
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 145/296 (48%), Gaps = 53/296 (17%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118
RY + +EY GT F G Q Q N +V G LE+A G V + + RTDAGVHA V
Sbjct: 3 RYKLLIEYDGTPFCGWQYQDNGPSVQGALEDAVAALAGTHVRVHGAGRTDAGVHALGQVA 62
Query: 119 HVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERT 178
H+D+E+ + + VR A+N L+ I V VP F +RF A +R
Sbjct: 63 HIDLEKSYR-----------TDQVRDALNAHLRPH-PIGVLSAEIVPETFESRFSAVKRH 110
Query: 179 YFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSPIR 238
Y YRI + L++ + RAW + LD+ AM EA +VLVG HDF++FR + CQA SP +
Sbjct: 111 YIYRISNRRANLAL-DLHRAWRIARTLDVAAMHEAAQVLVGRHDFTTFRDTECQAKSPEK 169
Query: 239 TLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARA 298
TLD+L V+ ++ + ++ A
Sbjct: 170 TLDQLDVT----------------------------------------REGDAVSIVTSA 189
Query: 299 RSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY 354
RSFL+ QVR +VG L VG G T++D+ L A+ TA P+AP GL L V Y
Sbjct: 190 RSFLHSQVRSMVGSLVWVGHGRWTIADMRNALAARDRTACGPVAPPEGLYLVRVDY 245
>sp|A2ADA5|PUSL1_MOUSE tRNA pseudouridine synthase-like 1 OS=Mus musculus GN=Pusl1 PE=2
SV=1
Length = 291
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 162/307 (52%), Gaps = 44/307 (14%)
Query: 59 RYLIAVEYIGTRFSGSQKQLNCRTVVGVL---EEAFHKFIG-QPVSISLSSRTDAGVHAA 114
RYL+ ++Y+GT F+G VGVL EEA + PV ++SSRTDAGVHA
Sbjct: 13 RYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAGVHAL 72
Query: 115 SNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRA 174
SN H+D++R +PG+ P VV +A+N L+ I V VP+DFHAR A
Sbjct: 73 SNAAHLDIQR----RPGQ--SPFSPEVVAKALNTHLKHPA-IRVLKAFRVPNDFHARHAA 125
Query: 175 QERTYFYRILSG---PEPLSVFEKDRAWHV-TEELDLRAMQEACKVLVGCHDFSSFRASG 230
RTY YR+ +G P L VFE++ W + TE LD+ AMQEA + L+G HDFS+F+++G
Sbjct: 126 TSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAG 185
Query: 231 CQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHR 290
+ +RTL + VS +S +P G ++ +
Sbjct: 186 SPVTNTVRTLRRVSVSP--------------------GPASPFVLPEGS-------RRLQ 218
Query: 291 SYEVIARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAA--SPMAPACGLS 348
+ + ++SFLY QVR + VL AVG G L + V+ IL+++ + +APA GL
Sbjct: 219 FWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGLF 278
Query: 349 LGFVKYD 355
L V YD
Sbjct: 279 LKSVLYD 285
>sp|B1ZGA6|TRUA_METPB tRNA pseudouridine synthase A OS=Methylobacterium populi (strain
ATCC BAA-705 / NCIMB 13946 / BJ001) GN=truA PE=3 SV=1
Length = 252
Score = 155 bits (392), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 141/300 (47%), Gaps = 51/300 (17%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ RY + +EY G F G Q+Q + TV +E A +F G+ ++ + RTDAGVHA
Sbjct: 1 MPRYKLVIEYDGGPFCGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H+D+ R + + VR A+N L+ + I + V DF AR A
Sbjct: 61 VAHLDLARDWR-----------TDTVRDALNAHLRPQ-PIAIVSAEVVTHDFDARHSAIR 108
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y YRIL+ P + + WHV LD M A + L+G HDFS+FRA+ CQA SP
Sbjct: 109 RHYRYRILNRRSP-AALTRAHVWHVPWPLDADLMHAAAQRLLGRHDFSAFRAAECQAASP 167
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
+RTL++L V+ LF I VIA
Sbjct: 168 VRTLEQLDVTR-QRMGLFEEI------------------------------------VIA 190
Query: 297 -RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 355
ARSFL+HQVR + G L G L+ DV IL K P+APACGL+ V YD
Sbjct: 191 TSARSFLHHQVRAMAGTLMLAGCRRLSADDVAEILATKAKHRCGPLAPACGLTFVGVDYD 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,742,800
Number of Sequences: 539616
Number of extensions: 5438649
Number of successful extensions: 30860
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 27446
Number of HSP's gapped (non-prelim): 1865
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)