Query 016811
Match_columns 382
No_of_seqs 137 out of 1147
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj0_A Pseudouridine synthase 100.0 2.9E-77 9.8E-82 572.6 29.7 247 56-356 2-248 (264)
2 1vs3_A TRNA pseudouridine synt 100.0 2.8E-77 9.7E-82 568.4 25.2 247 57-356 1-248 (249)
3 2v9k_A Uncharacterized protein 89.0 2.6 9E-05 43.4 11.4 142 81-248 317-470 (530)
4 3q6c_A Probable receptor YHHM; 20.8 43 0.0015 25.9 1.8 26 50-78 57-82 (83)
5 2hh8_A Hypothetical protein YD 19.2 58 0.002 27.9 2.5 30 200-229 69-99 (149)
6 2l0c_A Putative membrane prote 19.1 48 0.0016 26.3 1.8 26 51-79 61-86 (97)
7 3rd4_A Uncharacterized protein 16.9 58 0.002 26.0 1.8 25 51-78 62-86 (100)
8 2l09_A ASR4154 protein; proto- 8.7 2.7E+02 0.0093 20.1 3.1 33 299-331 17-50 (62)
9 2kru_A Light-independent proto 7.6 3E+02 0.01 20.0 2.9 33 299-331 18-51 (63)
10 1dj0_A Pseudouridine synthase 6.2 3.5E+02 0.012 24.8 3.4 35 84-118 74-108 (264)
No 1
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=100.00 E-value=2.9e-77 Score=572.62 Aligned_cols=247 Identities=35% Similarity=0.488 Sum_probs=232.3
Q ss_pred ccceEEEEEEEeCCCceeeeecCCCCCHHHHHHHHHHHhhCCCeeeeeeccCCccccccccEEEEEEcccccCCCCCCCC
Q 016811 56 RIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLP 135 (382)
Q Consensus 56 ~~~r~~l~i~Y~Gt~Y~G~Q~Q~~~~TVqg~Le~AL~k~~~~~i~~~~asRTDkGVHA~~qvvs~~l~~~~~~~~~~~l~ 135 (382)
.|+||+|.|+|+||+|+|||+||+.+|||++||+||.+++++++.+.+|||||+||||++||+||+++..
T Consensus 2 Pm~r~~l~i~YdGt~y~GwQ~Q~~~~TVq~~Le~AL~~~~~~~v~~~~agRTDaGVHA~gqv~~f~~~~~---------- 71 (264)
T 1dj0_A 2 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTAL---------- 71 (264)
T ss_dssp CCEEEEEEEEECCTTSSCSCCTTCSSCHHHHHHHHHHHHHTSCCCEEESSCCCTTCEEEEEEEEEEESCC----------
T ss_pred CccEEEEEEEEeCCCceeEEECcCCCCHHHHHHHHHHHHhCCCeEEEEeccCCCCCchhhEEEEEEECCC----------
Confidence 3678999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred CCChHHHHHHHHhcCCCCCCeEEEEEEEcCCCCcccccccceEEEEEcccCCCCCCccccCceeecCCcCCHHHHHHHHH
Q 016811 136 PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACK 215 (382)
Q Consensus 136 ~~~~~~l~~~LN~~Lp~p~dIrV~~i~~V~~~F~aR~~~~~R~Y~Y~l~~~~~~~~~f~~~~~~~~~~~lDi~~m~ea~~ 215 (382)
.+++.+..+||.+|| +||+|+++.+|+++|||||+|++|+|+|+|+..+.+ ++|.++++|++..++|+++|++|++
T Consensus 72 -~~~~~~~~~lN~~LP--~dI~V~~~~~V~~~FhARf~a~~R~Y~Y~i~~~~~~-~~~~~~~~~~~~~~lD~~~M~~aa~ 147 (264)
T 1dj0_A 72 -RKDAAWTLGVNANLP--GDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR-PAVLSKGVTHFYEPLDAERMHRAAQ 147 (264)
T ss_dssp -CCHHHHHHHHHHTSC--TTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSC-CCTTTTSSEECCSCCCHHHHHHHHG
T ss_pred -CCHHHHHHHHHhhCC--cCeEEEEEEeCCCCCCcccccccEEEEEEEccCCCC-ChhHcCceEeeCCCCCHHHHHHHHH
Confidence 346789999999998 899999999999999999999999999999988766 7899999999999999999999999
Q ss_pred HcccccccccccccCCCCCCCeEEEEEEEEEeeecccccccccCCCCccccccCCcCCCCCCCCCCcccccccccEEEEE
Q 016811 216 VLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295 (382)
Q Consensus 216 ~f~GtHDF~nFt~~~~~~~s~~R~I~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~ 295 (382)
.|+|+|||+|||+.+++.++++|+|++++|.+. .+++.|+
T Consensus 148 ~l~G~HDF~~F~~~~~~~~s~vR~I~~~~v~~~----------------------------------------~~~i~~~ 187 (264)
T 1dj0_A 148 CLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH----------------------------------------GPYVVVD 187 (264)
T ss_dssp GGCEEEECGGGCCTTCCCSCCEEEEEEEEEEEE----------------------------------------TTEEEEE
T ss_pred HhcCcccHHHhccCCCCCCCcEEEEEEEEEEEC----------------------------------------CCEEEEE
Confidence 999999999999988888999999999998752 1569999
Q ss_pred EEeCcchhhHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCCCCCCCCCceeeeccCCC
Q 016811 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356 (382)
Q Consensus 296 I~G~sFL~~QIR~MVg~lv~vg~G~~~~~~i~~~L~~~~~~~~~p~APa~GL~L~~V~Y~~ 356 (382)
|+|+||||||||+|||+|++||+|++++++|+++|+.+++....|+|||+||+|++|.|+.
T Consensus 188 i~g~~FL~~mVR~mvG~L~~vG~G~~~~~~i~~~L~~~~r~~~~~~APa~GL~L~~V~Y~~ 248 (264)
T 1dj0_A 188 IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPD 248 (264)
T ss_dssp EEESCCCTTHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCGGGSCCCCCSTTEEEEEEECCG
T ss_pred EEEchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCCCcccCcCccCCCCcEEeeeccCc
Confidence 9999999999999999999999999999999999999988788999999999999999964
No 2
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-77 Score=568.42 Aligned_cols=247 Identities=39% Similarity=0.492 Sum_probs=229.3
Q ss_pred cceEEEEEEEeCCCceeeeecCCC-CCHHHHHHHHHHHhhCCCeeeeeeccCCccccccccEEEEEEcccccCCCCCCCC
Q 016811 57 IQRYLIAVEYIGTRFSGSQKQLNC-RTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVLP 135 (382)
Q Consensus 57 ~~r~~l~i~Y~Gt~Y~G~Q~Q~~~-~TVqg~Le~AL~k~~~~~i~~~~asRTDkGVHA~~qvvs~~l~~~~~~~~~~~l~ 135 (382)
|+||+|.|+|+||+|+|||+||+. +|||++||+||.++ ++++.+.+|||||+||||++||+||+++..
T Consensus 1 M~r~~l~i~YdGt~y~GwQ~Q~~~~~TVq~~Le~AL~~~-~~~v~~~~agRTDaGVHA~gqv~~f~~~~~---------- 69 (249)
T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALAMPFHVDVESA---------- 69 (249)
T ss_dssp CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGG-TBCSCCEESSCCBTTCEEEEEEEEEEECSC----------
T ss_pred CcEEEEEEEEECCCceeEeECCCCCCCHHHHHHHHHHHc-CCcceEEEeccCcCCcCccccEEEEEECCC----------
Confidence 678999999999999999999999 99999999999999 899999999999999999999999999852
Q ss_pred CCChHHHHHHHHhcCCCCCCeEEEEEEEcCCCCcccccccceEEEEEcccCCCCCCccccCceeecCCcCCHHHHHHHHH
Q 016811 136 PHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACK 215 (382)
Q Consensus 136 ~~~~~~l~~~LN~~Lp~p~dIrV~~i~~V~~~F~aR~~~~~R~Y~Y~l~~~~~~~~~f~~~~~~~~~~~lDi~~m~ea~~ 215 (382)
.+++.+..+||.+|| +||+|+++.+|+++|||||+|++|+|+|+|+..+.+ +||.++++|++..++|+++|++|++
T Consensus 70 -~~~~~~~~~lN~~LP--~dI~V~~~~~v~~~FhARf~a~~R~Y~Y~i~~~~~~-~~~~~~~~~~~~~~ldi~~m~~aa~ 145 (249)
T 1vs3_A 70 -IPVEKVPEALNRLLP--EDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHP-SPLLRHRALWVRRPLDLEAMEEALS 145 (249)
T ss_dssp -CCGGGHHHHHHHHSC--TTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSC-CTTTTTTSEEECSCCCHHHHHHHHH
T ss_pred -CCHHHHHHHHHhcCC--cCEEEEEEEECCCCCCcccccccEEEEEEEccCCCC-ChhhCCeeEEeCCCCCHHHHHHHHH
Confidence 245679999999998 899999999999999999999999999999988766 8999999999999999999999999
Q ss_pred HcccccccccccccCCCCCCCeEEEEEEEEEeeecccccccccCCCCccccccCCcCCCCCCCCCCcccccccccEEEEE
Q 016811 216 VLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVI 295 (382)
Q Consensus 216 ~f~GtHDF~nFt~~~~~~~s~~R~I~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~ 295 (382)
.|+|+|||+|||+.++ ++++|+|++++|.+... + ..+++.|+
T Consensus 146 ~l~G~HDF~~F~~~~~--~~~vR~I~~~~v~~~~~---------~---------------------------~~~~i~~~ 187 (249)
T 1vs3_A 146 LLLGRHNFLGFAKEET--RPGERELLEARLQVAEG---------E---------------------------AGLEVRLY 187 (249)
T ss_dssp HHSEEEEGGGGCSSCC--SCCEEEEEEEEEEEEEC---------S---------------------------SSEEEEEE
T ss_pred HhcCceeHHheecCCC--CCCCcEEEEEEEEeccc---------c---------------------------CCCEEEEE
Confidence 9999999999998775 89999999999975310 0 12579999
Q ss_pred EEeCcchhhHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCCCCCCCCCceeeeccCCC
Q 016811 296 ARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356 (382)
Q Consensus 296 I~G~sFL~~QIR~MVg~lv~vg~G~~~~~~i~~~L~~~~~~~~~p~APa~GL~L~~V~Y~~ 356 (382)
|+|+||||||||+|||+|++||+|++++++|+++|+.+++....|+|||+||+|++|.|+.
T Consensus 188 i~g~~FL~~mVR~mvG~l~~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~L~~v~Y~~ 248 (249)
T 1vs3_A 188 FRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAHGLYFVEAAYPE 248 (249)
T ss_dssp EEESCCCTTHHHHHHHHHHHHHHSSSCGGGHHHHHHHCCGGGSCCCCCGGGEEEEEEECCC
T ss_pred EEEChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCCCcccCcCccCCCCcEEeeeeCCC
Confidence 9999999999999999999999999999999999999988788999999999999999974
No 3
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=88.99 E-value=2.6 Score=43.45 Aligned_cols=142 Identities=12% Similarity=0.145 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHhh-CCCeeeeeeccCCcccccccc----EEEEEEcccccCCCCCCCCCCChHHHHHHHHhcCCCCCC
Q 016811 81 RTVVGVLEEAFHKFI-GQPVSISLSSRTDAGVHAASN----VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGD 155 (382)
Q Consensus 81 ~TVqg~Le~AL~k~~-~~~i~~~~asRTDkGVHA~~q----vvs~~l~~~~~~~~~~~l~~~~~~~l~~~LN~~Lp~p~d 155 (382)
.+||+.|...+.+.+ +....+.+|||-|.-|=-+|+ |+.+.=+.. +. +...+...+...||... ..
T Consensus 317 ~SVee~I~~~i~~~f~~~~~~Fh~sGREDvDVRmLG~GRPFvlEi~~P~r--~~----~~~~dl~~le~~IN~~~---~~ 387 (530)
T 2v9k_A 317 SSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHR--VH----FTSQEIKELQQKINNSS---NK 387 (530)
T ss_dssp CCHHHHHHTTHHHHHTCSEEEEEESSCCCTTCEEEEEEEEEEEEEESCSC--CC----CCHHHHHHHHHHHHTTC---SS
T ss_pred CCHHHHHHHHHHHhcCCCeEEEeecCCCCCceeecCCCCcEEEEecCccc--cc----cchhHHHHHHHHHhccC---Cc
Confidence 699999998887765 578999999999999999998 433322211 10 11123456788999843 56
Q ss_pred eEEEEEEEcCCCCccccc----ccceEEEEEcccCCCCCCccccCceeecCCcCCHHHHHHHHHHcccccccccccc---
Q 016811 156 IMVTDVRCVPSDFHARFR----AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRA--- 228 (382)
Q Consensus 156 IrV~~i~~V~~~F~aR~~----~~~R~Y~Y~l~~~~~~~~~f~~~~~~~~~~~lDi~~m~ea~~~f~GtHDF~nFt~--- 228 (382)
|.|.++..|+..=-.+.- -..|+|.=.+.. ..+++-+.++++.. |.|---+.---.
T Consensus 388 V~V~~L~~v~~~~~~~ik~ge~~~~K~Y~alv~~----------------~~~v~~e~l~~~~~-l~~l~I~QrtP~RV~ 450 (530)
T 2v9k_A 388 IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWT----------------NKAIQKKDIEFLND-IKDLKIDQKTPLRVL 450 (530)
T ss_dssp EEEEEEEEECTHHHHHHHHHHHHCCEEEEEEEEE----------------SSCCCHHHHGGGGG-CCSEEEEEECCGGGT
T ss_pred EEEEeeEEEcHHHHHHHhcccccCCeEEEEEEEE----------------cCCCCHHHHHHHHh-cCCceeeccCCeEEE
Confidence 999999988744222222 234777754432 34566677776655 655221111000
Q ss_pred cCCCCCCCeEEEEEEEEEee
Q 016811 229 SGCQANSPIRTLDELHVSEV 248 (382)
Q Consensus 229 ~~~~~~s~~R~I~~~~i~~~ 248 (382)
.........|+|+++++.+.
T Consensus 451 hRR~~~~R~R~I~~i~~~~~ 470 (530)
T 2v9k_A 451 HRRPLAVRARVIHFMETQYV 470 (530)
T ss_dssp TTSCCCEEEEEEEEEEEEEE
T ss_pred EecCCCccceEEEEEEEEEe
Confidence 00112224688999988764
No 4
>3q6c_A Probable receptor YHHM; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.60A {Klebsiella variicola at-22}
Probab=20.83 E-value=43 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=18.0
Q ss_pred ccccccccceEEEEEEEeCCCceeeeecC
Q 016811 50 VMSTNKRIQRYLIAVEYIGTRFSGSQKQL 78 (382)
Q Consensus 50 ~~~~~~~~~r~~l~i~Y~Gt~Y~G~Q~Q~ 78 (382)
+..+.++..- .+.|.||+|.||..++
T Consensus 57 Y~~l~~Gd~G---~Lt~QGTRF~~F~~~~ 82 (83)
T 3q6c_A 57 YHALSVGDRG---MLSYKGTAFVAFTPDP 82 (83)
T ss_dssp HHHCCTTCEE---EEEEETTEEEEEEECC
T ss_pred cCCCCCCCEE---EEEEeeeEEEEEecCC
Confidence 3344455433 5789999999998764
No 5
>2hh8_A Hypothetical protein YDFO; structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Escherichia coli} SCOP: d.358.1.1
Probab=19.24 E-value=58 Score=27.90 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=25.1
Q ss_pred ecCCcCCHHHHHHHHHHc-cccccccccccc
Q 016811 200 HVTEELDLRAMQEACKVL-VGCHDFSSFRAS 229 (382)
Q Consensus 200 ~~~~~lDi~~m~ea~~~f-~GtHDF~nFt~~ 229 (382)
.+....|.++++++++.. -|..||..||..
T Consensus 69 ~Va~~~n~~~ik~~lk~hQaG~tdF~tFC~~ 99 (149)
T 2hh8_A 69 SVKFSKDRHLIETTSNKLKSREITFQEYRRN 99 (149)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred eecCcCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 456778999999988765 599999999974
No 6
>2l0c_A Putative membrane protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Salmonella enterica subsp}
Probab=19.07 E-value=48 Score=26.32 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=18.5
Q ss_pred cccccccceEEEEEEEeCCCceeeeecCC
Q 016811 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQLN 79 (382)
Q Consensus 51 ~~~~~~~~r~~l~i~Y~Gt~Y~G~Q~Q~~ 79 (382)
..+.++..- .+.|.||+|-||+.+++
T Consensus 61 ~~L~eGD~G---~Lt~QGTRfl~Fer~~~ 86 (97)
T 2l0c_A 61 HALTVGDQG---TLSYKGTRFVGFVSRTP 86 (97)
T ss_dssp TTSCTTCCE---EEEEETTEEEEEECSSC
T ss_pred CCCCCCCEE---EEEEeeeeEEeeecCCC
Confidence 334444433 57899999999999764
No 7
>3rd4_A Uncharacterized protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, propen_03304, unknown function; 2.90A {Proteus penneri}
Probab=16.94 E-value=58 Score=26.02 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=18.2
Q ss_pred cccccccceEEEEEEEeCCCceeeeecC
Q 016811 51 MSTNKRIQRYLIAVEYIGTRFSGSQKQL 78 (382)
Q Consensus 51 ~~~~~~~~r~~l~i~Y~Gt~Y~G~Q~Q~ 78 (382)
..+.++..- .+.|.||+|-||..++
T Consensus 62 ~~L~~Gd~G---~Lt~QGTRFi~F~~~~ 86 (100)
T 3rd4_A 62 QNIEPEMKG---RLFMQGSRFVQFETDV 86 (100)
T ss_dssp HTCCTTCEE---EEEEETTEEEEEEECC
T ss_pred CCCCCCCEE---EEEEeeeEEEEeecCC
Confidence 344444433 5689999999999986
No 8
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=8.75 E-value=2.7e+02 Score=20.14 Aligned_cols=33 Identities=15% Similarity=0.032 Sum_probs=26.5
Q ss_pred CcchhhHHHHHHHH-HHHHhcCCCCHHHHHHHHh
Q 016811 299 RSFLYHQVRLIVGV-LKAVGTGELTVSDVERILK 331 (382)
Q Consensus 299 ~sFL~~QIR~MVg~-lv~vg~G~~~~~~i~~~L~ 331 (382)
-+|++.+||+.+-- +.+-|...++.+.+.++-.
T Consensus 17 P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~ 50 (62)
T 2l09_A 17 PFFARSQAKARIEQLARQAEQDIVTPELVEQARL 50 (62)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHH
Confidence 47999999988865 5668888999999877643
No 9
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=7.59 E-value=3e+02 Score=19.97 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=26.9
Q ss_pred CcchhhHHHHHHHH-HHHHhcCCCCHHHHHHHHh
Q 016811 299 RSFLYHQVRLIVGV-LKAVGTGELTVSDVERILK 331 (382)
Q Consensus 299 ~sFL~~QIR~MVg~-lv~vg~G~~~~~~i~~~L~ 331 (382)
-+|++.+||+.+-- +.+-|...++.+.+.++-.
T Consensus 18 P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~ 51 (63)
T 2kru_A 18 PFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKE 51 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHH
Confidence 47999999988865 6668999999999977654
No 10
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=6.19 E-value=3.5e+02 Score=24.80 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCCeeeeeeccCCccccccccEE
Q 016811 84 VGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVC 118 (382)
Q Consensus 84 qg~Le~AL~k~~~~~i~~~~asRTDkGVHA~~qvv 118 (382)
...+..+|...++.+|.+..+.+.+.+-||+-.+.
T Consensus 74 ~~~~~~~lN~~LP~dI~V~~~~~V~~~FhARf~a~ 108 (264)
T 1dj0_A 74 DAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSAT 108 (264)
T ss_dssp HHHHHHHHHHTSCTTEEEEEEEECCTTCCTTTTCC
T ss_pred HHHHHHHHHhhCCcCeEEEEEEeCCCCCCcccccc
Confidence 45688899999999999999999999999997653
Done!