Query 016811
Match_columns 382
No_of_seqs 137 out of 1147
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 04:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016811.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016811hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dj0a_ d.265.1.1 (A:) Pseudou 100.0 1E-72 7.6E-77 538.9 29.5 248 55-356 1-248 (264)
2 d1ixsa_ a.5.1.1 (A:) DNA helic 18.3 56 0.0041 20.9 3.4 34 298-331 14-47 (50)
3 d1l5aa1 c.43.1.2 (A:1-174) Vib 16.2 29 0.0021 27.0 2.0 27 197-223 25-51 (174)
4 d1q9ja1 c.43.1.2 (A:1-175) Pol 14.3 32 0.0023 26.6 1.7 28 198-225 27-54 (175)
5 d1e88a3 g.27.1.1 (A:1-41) Fibr 11.8 23 0.0017 21.9 -0.0 11 103-113 2-12 (41)
6 d2hh8a1 d.358.1.1 (A:7-133) Hy 11.6 52 0.0038 25.4 2.2 30 200-229 63-93 (127)
7 d2z15a1 d.370.1.1 (A:10-126) T 9.0 1.3E+02 0.0093 22.7 3.6 46 302-347 1-53 (117)
8 d1kcfa1 a.140.2.1 (A:3-38) Mit 7.5 73 0.0053 18.5 1.1 18 87-108 6-23 (36)
9 d1xb2b2 d.43.1.1 (B:112-222) E 6.9 1.7E+02 0.012 21.2 3.5 27 80-107 81-107 (111)
10 d1u02a_ c.108.1.15 (A:) Trehal 5.5 1.2E+02 0.0088 23.1 1.9 45 61-107 2-47 (229)
No 1
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1e-72 Score=538.86 Aligned_cols=248 Identities=35% Similarity=0.485 Sum_probs=230.6
Q ss_pred cccceEEEEEEEeCCCceeeeecCCCCCHHHHHHHHHHHhhCCCeeeeeeccCCccccccccEEEEEEcccccCCCCCCC
Q 016811 55 KRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPGEVL 134 (382)
Q Consensus 55 ~~~~r~~l~i~Y~Gt~Y~G~Q~Q~~~~TVqg~Le~AL~k~~~~~i~~~~asRTDkGVHA~~qvvs~~l~~~~~~~~~~~l 134 (382)
|.|+||+|.|+|+||+|+|||+|++.+||||+|++||.+++++++.+.+||||||||||++|||||+++..
T Consensus 1 p~~~r~al~i~Y~Gt~f~G~Q~Q~~~~TVq~~Le~aL~~~~~~~~~~~~agRTD~GVhA~~qv~~~~~~~~--------- 71 (264)
T d1dj0a_ 1 PPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTAL--------- 71 (264)
T ss_dssp CCCEEEEEEEEECCTTSSCSCCTTCSSCHHHHHHHHHHHHHTSCCCEEESSCCCTTCEEEEEEEEEEESCC---------
T ss_pred CCcEEEEEEEEEECCCeeeEeECcCCCCHHHHHHHHHHHhhCCCeEEEEeecccCCcceeeEEEEEeeccc---------
Confidence 56888999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCCChHHHHHHHHhcCCCCCCeEEEEEEEcCCCCcccccccceEEEEEcccCCCCCCccccCceeecCCcCCHHHHHHHH
Q 016811 135 PPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEAC 214 (382)
Q Consensus 135 ~~~~~~~l~~~LN~~Lp~p~dIrV~~i~~V~~~F~aR~~~~~R~Y~Y~l~~~~~~~~~f~~~~~~~~~~~lDi~~m~ea~ 214 (382)
.+.+.+...||.+|| +||+|+++.+|+.+||||++|.+|+|+|+|..+..+ +++.+.+.|++...+|+++|++|+
T Consensus 72 --~~~~~~~~~lN~~Lp--~dI~i~~~~~v~~~F~aR~~a~~r~Y~Y~i~~~~~~-~~~~~~~~~~~~~~ld~~~m~~a~ 146 (264)
T d1dj0a_ 72 --RKDAAWTLGVNANLP--GDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR-PAVLSKGVTHFYEPLDAERMHRAA 146 (264)
T ss_dssp --CCHHHHHHHHHHTSC--TTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSC-CCTTTTSSEECCSCCCHHHHHHHH
T ss_pred --hhhhhhhcccccccc--cccccccceeccccccchhhhhhcccceeecccccc-ccccccccccccCCcchHHHHHHH
Confidence 346789999999998 899999999999999999999999999999988765 677888899999999999999999
Q ss_pred HHcccccccccccccCCCCCCCeEEEEEEEEEeeecccccccccCCCCccccccCCcCCCCCCCCCCcccccccccEEEE
Q 016811 215 KVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEV 294 (382)
Q Consensus 215 ~~f~GtHDF~nFt~~~~~~~s~~R~I~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i 294 (382)
+.|+|+|||+||++.+....++.|+|..+.+.+. .+++.|
T Consensus 147 ~~~~G~hdF~~F~~~~~~~~~~~r~i~~~~~~~~----------------------------------------~~~i~i 186 (264)
T d1dj0a_ 147 QCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH----------------------------------------GPYVVV 186 (264)
T ss_dssp GGGCEEEECGGGCCTTCCCSCCEEEEEEEEEEEE----------------------------------------TTEEEE
T ss_pred hhccCcccccccccccccCCCcccccccccceec----------------------------------------CcEEEE
Confidence 9999999999999988777889999999888652 256899
Q ss_pred EEEeCcchhhHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCCCCCCCCCceeeeccCCC
Q 016811 295 IARARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDL 356 (382)
Q Consensus 295 ~I~G~sFL~~QIR~MVg~lv~vg~G~~~~~~i~~~L~~~~~~~~~p~APa~GL~L~~V~Y~~ 356 (382)
+|+|+||||||||+|||+|++||+|+++++.|+++|+.+++....++|||+||+|++|.|+.
T Consensus 187 ~i~g~sFL~~qVR~mvg~ll~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~L~~V~Y~~ 248 (264)
T d1dj0a_ 187 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPD 248 (264)
T ss_dssp EEEESCCCTTHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCGGGSCCCCCSTTEEEEEEECCG
T ss_pred EechhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCcccCccccCCCCCEEcccccCc
Confidence 99999999999999999999999999999999999998877778999999999999999964
No 2
>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=18.29 E-value=56 Score=20.87 Aligned_cols=34 Identities=26% Similarity=0.141 Sum_probs=27.9
Q ss_pred eCcchhhHHHHHHHHHHHHhcCCCCHHHHHHHHh
Q 016811 298 ARSFLYHQVRLIVGVLKAVGTGELTVSDVERILK 331 (382)
Q Consensus 298 G~sFL~~QIR~MVg~lv~vg~G~~~~~~i~~~L~ 331 (382)
+=+|--.|||-.|.-++.---+.-..+.|...|.
T Consensus 14 aLGFrE~QvRsvVaell~~nP~a~aq~lIr~aL~ 47 (50)
T d1ixsa_ 14 ALGFKEAQARAVVLDLLAQNPKARAQDLIKEALK 47 (50)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHT
T ss_pred HhcccHHHHHHHHHHHHHhCccccHHHHHHHHHh
Confidence 3579999999999999998888777777777664
No 3
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=16.25 E-value=29 Score=27.02 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.5
Q ss_pred ceeecCCcCCHHHHHHHHHHccccccc
Q 016811 197 RAWHVTEELDLRAMQEACKVLVGCHDF 223 (382)
Q Consensus 197 ~~~~~~~~lDi~~m~ea~~~f~GtHDF 223 (382)
..+.+...+|+++|++|+..++..|+-
T Consensus 25 ~~~~i~g~ld~~~l~~A~~~l~~rh~~ 51 (174)
T d1l5aa1 25 HSLRLTGPLDTTLLLRALHLTVSEIDL 51 (174)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCGG
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHhCch
Confidence 345677899999999999999999985
No 4
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.29 E-value=32 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=23.7
Q ss_pred eeecCCcCCHHHHHHHHHHccccccccc
Q 016811 198 AWHVTEELDLRAMQEACKVLVGCHDFSS 225 (382)
Q Consensus 198 ~~~~~~~lDi~~m~ea~~~f~GtHDF~n 225 (382)
.+.+...+|+++|++|++.++-.|+--.
T Consensus 27 ~~~l~g~ld~~~l~~A~~~lv~rh~~LR 54 (175)
T d1q9ja1 27 TIQLRGVIDVDALSDAFDALLETHPVLA 54 (175)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHCGGGS
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhchhhe
Confidence 3456789999999999999999999543
No 5
>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.77 E-value=23 Score=21.88 Aligned_cols=11 Identities=36% Similarity=0.232 Sum_probs=8.0
Q ss_pred eeccCCccccc
Q 016811 103 LSSRTDAGVHA 113 (382)
Q Consensus 103 ~asRTDkGVHA 113 (382)
+..+||.||.=
T Consensus 2 G~C~Td~Gv~Y 12 (41)
T d1e88a3 2 GHCVTDSGVVY 12 (41)
T ss_dssp CCEEETTTEEE
T ss_pred CccCccCCeEE
Confidence 45688888864
No 6
>d2hh8a1 d.358.1.1 (A:7-133) Hypothetical protein YdfO {Escherichia coli [TaxId: 562]}
Probab=11.59 E-value=52 Score=25.38 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.2
Q ss_pred ecCCcCCHHHHHHHHHHcc-ccccccccccc
Q 016811 200 HVTEELDLRAMQEACKVLV-GCHDFSSFRAS 229 (382)
Q Consensus 200 ~~~~~lDi~~m~ea~~~f~-GtHDF~nFt~~ 229 (382)
.+....|.+++++|++... |..||..||+.
T Consensus 63 ~Va~~~n~~~i~~al~~~QaG~~~f~~Fc~~ 93 (127)
T d2hh8a1 63 SVKFSKDRHLIETTSNKLKSREITFQEYRRN 93 (127)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred EecCcCCHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3466789999999997764 99999999975
No 7
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.02 E-value=1.3e+02 Score=22.66 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHhcCCCCHHHH-------HHHHhcCCCCCCCCCCCCCCc
Q 016811 302 LYHQVRLIVGVLKAVGTGELTVSDV-------ERILKAKTVTAASPMAPACGL 347 (382)
Q Consensus 302 L~~QIR~MVg~lv~vg~G~~~~~~i-------~~~L~~~~~~~~~p~APa~GL 347 (382)
|+.-|+-.|..+...-.|+++...+ +++|..+-..-..|-.|..|=
T Consensus 1 M~~EI~~av~Fl~~~l~~kl~~~~~~~F~~~L~~~L~~~y~~HWyp~~P~kGs 53 (117)
T d2z15a1 1 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGS 53 (117)
T ss_dssp SHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTTCCCTTCTTTTH
T ss_pred CHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcc
Confidence 5677888999999988999998554 455554433346777777773
No 8
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=7.50 E-value=73 Score=18.51 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=10.2
Q ss_pred HHHHHHHhhCCCeeeeeeccCC
Q 016811 87 LEEAFHKFIGQPVSISLSSRTD 108 (382)
Q Consensus 87 Le~AL~k~~~~~i~~~~asRTD 108 (382)
..+-+.+++| ++++||.|
T Consensus 6 flqhickltg----lsrsgrkd 23 (36)
T d1kcfa1 6 FLQHICKLTG----LSRSGRKD 23 (36)
T ss_dssp HHHHHHHHTT----CCCCSCTT
T ss_pred HHHHHHHhhc----ccccccHH
Confidence 3344555544 66777766
No 9
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=6.92 E-value=1.7e+02 Score=21.18 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHhhCCCeeeeeeccC
Q 016811 80 CRTVVGVLEEAFHKFIGQPVSISLSSRT 107 (382)
Q Consensus 80 ~~TVqg~Le~AL~k~~~~~i~~~~asRT 107 (382)
..||++.|..+..+ +|++|.+.|..|-
T Consensus 81 ~~tv~d~i~~~ia~-iGEnI~lrR~~~~ 107 (111)
T d1xb2b2 81 EGSLKDQLALAIGK-LGENMILKRAAWV 107 (111)
T ss_dssp CSBHHHHHHHHHHH-HCSCEEEEEEEEE
T ss_pred CCcHHHHHHHHhhh-hCCCEEEEEEEEE
Confidence 46999999999988 6799999988764
No 10
>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.53 E-value=1.2e+02 Score=23.14 Aligned_cols=45 Identities=16% Similarity=0.051 Sum_probs=29.5
Q ss_pred EEEEEEeCCCceeeeecCCCCCHHHHHHHHHHHhh-CCCeeeeeeccC
Q 016811 61 LIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFI-GQPVSISLSSRT 107 (382)
Q Consensus 61 ~l~i~Y~Gt~Y~G~Q~Q~~~~TVqg~Le~AL~k~~-~~~i~~~~asRT 107 (382)
+|.+=+|||- ..+..+|...+|...+.++|.++. +..+ +..+||.
T Consensus 2 Li~~DlDGTL-~~~~~~~~~~~i~~~~~~~l~~l~~~~~v-~i~TGR~ 47 (229)
T d1u02a_ 2 LIFLDYDGTL-VPIIMNPEESYADAGLLSLISDLKERFDT-YIVTGRS 47 (229)
T ss_dssp EEEEECBTTT-BCCCSCGGGCCCCHHHHHHHHHHHHHSEE-EEECSSC
T ss_pred EEEEEecCCC-CCCCCChhhCCCCHHHHHHHHHHhhCCCE-EEEcCCC
Confidence 4667789994 444555556677778888887753 2234 4578886
Done!