RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016811
(382 letters)
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
coli [TaxId: 562]}
Length = 264
Score = 144 bits (364), Expect = 2e-41
Identities = 85/309 (27%), Positives = 124/309 (40%), Gaps = 58/309 (18%)
Query: 57 IQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAASN 116
+ + + +EY G+++ G Q+Q R+V LE+A + +P+++ + RTDAGVH
Sbjct: 3 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 62
Query: 117 VCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRCVPSDFHARFRAQE 176
V H + + GDI V V+ VP DFHARF A
Sbjct: 63 VVHFE-------------TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATA 109
Query: 177 RTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQANSP 236
R Y Y I + H E LD M A + L+G +DF+SFRA CQ+ +P
Sbjct: 110 RRYRYIIYNHRLR-PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP 168
Query: 237 IRTLDELHVSEVVSTALFSSINQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIA 296
R + ++ + + V
Sbjct: 169 WRNVMHIN----------------------------------------VTRHGPYVVVDI 188
Query: 297 RARSFLYHQVRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKY-- 354
+A +F++H VR IVG L VG S + +L AK T A+ A A GL L V Y
Sbjct: 189 KANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPD 248
Query: 355 --DLPEDDQ 361
DLP+
Sbjct: 249 RYDLPKPPM 257
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Length = 174
Score = 29.8 bits (66), Expect = 0.34
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 174 AQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHD--FSSFRASGC 231
AQ+ + + + + +T LD + A + V D + F A G
Sbjct: 4 AQKPFWQRHLAYPHIN--LDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGE 61
Query: 232 QANSPIRTLDELHVSEV 248
P + +
Sbjct: 62 LYWHPFSPPIDYQDLSI 78
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
{Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 28.5 bits (62), Expect = 1.5
Identities = 24/146 (16%), Positives = 41/146 (28%), Gaps = 25/146 (17%)
Query: 87 LEEAFHKFIGQPVSISLSSRTDAGVHAASNVCHVDVERISKRKPG-EVLPPHDSSVVRRA 145
E++ + +++L+S T A +H A V V K VL
Sbjct: 26 FEQSVKDYSKSENALALNSATAA-LHLALRVAGV--------KQDDIVLAS--------- 67
Query: 146 VNHFLQSEGDIMVTDVRCVPSDFHARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEEL 205
F+ S I + V D E L +K +A +T
Sbjct: 68 SFTFIASVAPICYLKAKPVFIDCD------ETYNIDVDLLKLAIKECEKKPKALILTHLY 121
Query: 206 DLRAMQEACKVLVGCHDFSSFRASGC 231
A + + +D +
Sbjct: 122 GNAAKMDEIVEICKENDIVLIEDAAE 147
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 27.6 bits (60), Expect = 2.6
Identities = 12/124 (9%), Positives = 28/124 (22%), Gaps = 21/124 (16%)
Query: 44 TRTVTEVMSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISL 103
T + T ++ + + + G+R L E+ G +I
Sbjct: 48 TDSGTGAVTQSMQAAMMRGDEAFSGSRS------------YYALAESVKNIFGYQYTIPT 95
Query: 104 SSRTDAGVHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQSEGDIMVTDVRC 163
A + + + V + F ++G +
Sbjct: 96 HQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSN---------YFFDTTQGHSQINGCTV 146
Query: 164 VPSD 167
Sbjct: 147 RNVY 150
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 195
Score = 27.0 bits (59), Expect = 3.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 157 MVTDVRCVPSDFHARFRAQERTYFYR 182
+ VP D H F+ +E+ YF +
Sbjct: 138 VDRMFPGVPLDTHDVFQFREKAYFCQ 163
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 26.9 bits (58), Expect = 4.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 87 LEEAFHKFIGQPVSISLSSRTDA 109
LE AF + G ++++SS T
Sbjct: 36 LEAAFCRLTGNQYAVAVSSATAG 58
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.2 bits (57), Expect = 5.2
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 157 MVTDVRCVPSDFHARFRAQERTYFYR 182
+ D + A F YF+
Sbjct: 145 IAHDFPGIGHKVDAVFMKDGFFYFFH 170
>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 26.2 bits (57), Expect = 6.0
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 157 MVTDVRCVPSDFHARFRAQERTYFYR 182
+ D + A + YF+
Sbjct: 141 IEEDFPGIGDKVDAVYEKNGYIYFFN 166
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein
5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 175
Score = 25.5 bits (55), Expect = 8.6
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 198 AWHVTEELDLRAMQEACKVLVGCHD 222
+ +D+ A+ +A L+ H
Sbjct: 27 TIQLRGVIDVDALSDAFDALLETHP 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.374
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,384,899
Number of extensions: 63533
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 10
Length of query: 382
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,213,086
Effective search space: 357860370
Effective search space used: 357860370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.3 bits)