Your job contains 1 sequence.
>016812
MAEREETEKKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYAS
MGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVL
IANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT
VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIAR
LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV
FDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE
TLFTEAVKILEDKCERVITELS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016812
(382 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2036494 - symbol:RPAC43 "RNA polymerase I subu... 1310 1.1e-133 1
TAIR|locus:2025855 - symbol:ATRPAC42 species:3702 "Arabid... 1199 6.5e-122 1
DICTYBASE|DDB_G0282339 - symbol:rpa5 "RNA polymerase III ... 384 9.8e-70 2
UNIPROTKB|Q32L22 - symbol:POLR1C "DNA-directed RNA polyme... 694 2.1e-68 1
UNIPROTKB|E2RH57 - symbol:POLR1C "Uncharacterized protein... 690 5.6e-68 1
MGI|MGI:103288 - symbol:Polr1c "polymerase (RNA) I polype... 689 7.2e-68 1
UNIPROTKB|O15160 - symbol:POLR1C "DNA-directed RNA polyme... 687 1.2e-67 1
UNIPROTKB|Q5RJK9 - symbol:Polr1c "Protein Polr1c" species... 672 4.5e-66 1
UNIPROTKB|F1RRJ4 - symbol:POLR1C "Uncharacterized protein... 669 9.4e-66 1
UNIPROTKB|E1C548 - symbol:POLR1C "Uncharacterized protein... 645 3.3e-63 1
ZFIN|ZDB-GENE-040426-1495 - symbol:polr1c "polymerase (RN... 637 2.3e-62 1
UNIPROTKB|E7EQB9 - symbol:POLR1C "DNA-directed RNA polyme... 454 1.8e-60 2
POMBASE|SPBC1289.07c - symbol:rpc40 "DNA-directed RNA pol... 594 8.4e-58 1
SGD|S000006314 - symbol:RPC40 "RNA polymerase subunit AC4... 516 1.5e-49 1
CGD|CAL0005950 - symbol:RPC40 species:5476 "Candida albic... 509 8.5e-49 1
FB|FBgn0031657 - symbol:CG3756 species:7227 "Drosophila m... 500 7.7e-48 1
UNIPROTKB|F1LXY3 - symbol:Polr1c "Protein Polr1c" species... 495 2.6e-47 1
WB|WBGene00019275 - symbol:rpac-40 species:6239 "Caenorha... 493 4.2e-47 1
ASPGD|ASPL0000043748 - symbol:AN2415 species:162425 "Emer... 490 8.8e-47 1
UNIPROTKB|G4MQN0 - symbol:MGG_09284 "DNA-directed RNA pol... 436 4.6e-41 1
UNIPROTKB|H0Y723 - symbol:POLR1C "DNA-directed RNA polyme... 338 1.1e-30 1
UNIPROTKB|D6RDJ3 - symbol:POLR1C "DNA-directed RNA polyme... 314 3.9e-28 1
WB|WBGene00007971 - symbol:rpb-3 species:6239 "Caenorhabd... 263 1.1e-27 2
TAIR|locus:2047198 - symbol:NRPE3B species:3702 "Arabidop... 198 4.5e-26 2
TAIR|locus:2047168 - symbol:NRPB3 species:3702 "Arabidops... 180 9.1e-25 2
FB|FBgn0026373 - symbol:RpII33 "RNA polymerase II 33kD su... 178 1.1e-24 3
UNIPROTKB|I3LCH3 - symbol:POLR2C "Uncharacterized protein... 176 2.5e-23 3
UNIPROTKB|Q57648 - symbol:rpoD "DNA-directed RNA polymera... 151 1.2e-19 2
SGD|S000001283 - symbol:RPB3 "RNA polymerase II third lar... 183 5.1e-19 3
DICTYBASE|DDB_G0292244 - symbol:rpb3 "RNA polymerase II c... 225 1.5e-18 1
ASPGD|ASPL0000005413 - symbol:AN6252 species:162425 "Emer... 172 4.4e-18 3
POMBASE|SPCC1442.10c - symbol:rpb3 "RNA polymerase II sub... 159 7.9e-17 3
CGD|CAL0002919 - symbol:orf19.1248 species:5476 "Candida ... 175 6.6e-16 2
UNIPROTKB|Q5A462 - symbol:RPB3 "Putative uncharacterized ... 175 6.6e-16 2
UNIPROTKB|P19387 - symbol:POLR2C "DNA-directed RNA polyme... 178 1.9e-15 2
MGI|MGI:109299 - symbol:Polr2c "polymerase (RNA) II (DNA ... 177 4.6e-15 2
UNIPROTKB|E1BV97 - symbol:POLR2C "Uncharacterized protein... 175 5.3e-15 2
RGD|1306935 - symbol:Polr2c "polymerase (RNA) II (DNA dir... 175 5.3e-15 2
UNIPROTKB|Q3T0Q3 - symbol:POLR2C "DNA-directed RNA polyme... 173 1.0e-14 2
UNIPROTKB|E2RQ42 - symbol:POLR2C "Uncharacterized protein... 173 1.0e-14 2
ZFIN|ZDB-GENE-030131-6609 - symbol:polr2c "polymerase (RN... 161 1.8e-13 2
UNIPROTKB|D4A8A8 - symbol:Polr2c "Protein Polr2c" species... 175 6.6e-11 1
>TAIR|locus:2036494 [details] [associations]
symbol:RPAC43 "RNA polymerase I subunit 43" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0046983
"protein dimerization activity" evidence=IEA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677
GO:GO:0006351 EMBL:AC002292 GO:GO:0003899 eggNOG:COG0202
HOGENOM:HOG000230845 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:TVSRECL EMBL:L34773 EMBL:AF386969 EMBL:BT001161
IPI:IPI00538979 PIR:D96631 RefSeq:NP_176261.1 UniGene:At.8271
ProteinModelPortal:Q39216 SMR:Q39216 STRING:Q39216 PaxDb:Q39216
PRIDE:Q39216 EnsemblPlants:AT1G60620.1 GeneID:842356
KEGG:ath:AT1G60620 TAIR:At1g60620 InParanoid:Q39216
PhylomeDB:Q39216 ProtClustDB:CLSN2914384 ArrayExpress:Q39216
Genevestigator:Q39216 Uniprot:Q39216
Length = 385
Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
Identities = 253/369 (68%), Positives = 293/369 (79%)
Query: 15 SFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCN 74
+F+I+DLPDVP LPPH+E QRTRV C D+ IH + +SGAY+SMGVDNS++L++F
Sbjct: 20 NFNIFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSE 79
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
+F+V+VI LT+ DM FD+IG+ A IANAFRRIL+AELP+MAIEKV +ANNTSVIQDEVLA
Sbjct: 80 DFKVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLA 139
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HRLGLIPI DPRLFEY+SEND NEKNTIVFKLHV C +G PR V T+ELKWLPNGSE
Sbjct: 140 HRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSE 199
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHA 253
L K ++ P+TYTSF+ SQD PEF+ NPIRP L DI IA+LGPGQEIELEAHA
Sbjct: 200 L---IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHA 256
Query: 254 VKGIGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXXKTCPVNVFDIEDIGSGKKRA 313
VKGIGKTHAKWSPVATAWYRMLP K CP VFDIED+G G+KRA
Sbjct: 257 VKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRA 316
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
TVA+PR C+LCREC+R G EWE +V +RRVK+HFIFTIESTG+ PE LF EAVKILEDK
Sbjct: 317 TVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDK 376
Query: 374 CERVITELS 382
CERVI+ELS
Sbjct: 377 CERVISELS 385
>TAIR|locus:2025855 [details] [associations]
symbol:ATRPAC42 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 SMART:SM00662
EMBL:CP002684 GO:GO:0005730 GO:GO:0003677 GO:GO:0006351
EMBL:AC079675 GO:GO:0003899 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 EMBL:AK226775 IPI:IPI00518314
PIR:H96633 RefSeq:NP_176282.1 RefSeq:NP_849833.1 UniGene:At.8270
ProteinModelPortal:Q9C6C2 SMR:Q9C6C2 STRING:Q9C6C2 PRIDE:Q9C6C2
EnsemblPlants:AT1G60850.1 EnsemblPlants:AT1G60850.2 GeneID:842377
KEGG:ath:AT1G60850 TAIR:At1g60850 InParanoid:Q9C6C2 OMA:EHAKHQG
PhylomeDB:Q9C6C2 ProtClustDB:CLSN2681820 Genevestigator:Q9C6C2
Uniprot:Q9C6C2
Length = 375
Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
Identities = 239/365 (65%), Positives = 282/365 (77%)
Query: 15 SFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSLQLDHFC 73
+F+I DLPDVP LPPH++ Q+TRV +AP HT + +YSG Y +S D++++L +F
Sbjct: 12 NFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFY 71
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
+NF+V+V+ LTK DMEFD+IGIDAA ANAFRRILIAE+P+MAIEKVLIA NTSVI DEVL
Sbjct: 72 DNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVL 131
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
AHR+GLIPI DPRLFEY+SE+D +NEKNTIVFKLHV C + PRL V T++LKWLPNGS
Sbjct: 132 AHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGS 191
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAH 252
EL E++ N +SKP+TYTSFS SQD LPEF+NNPI P LDI IA+L PGQEIELEAH
Sbjct: 192 ELLRESE---NKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAH 248
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXXKTCPVNVFDIEDIGSGKKR 312
AVKGIGKTHAKWSPV TAWYRM P CP NVFDIED+G GKKR
Sbjct: 249 AVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKR 308
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
ATVAQPR CTLC+EC+R ++ V + VK+HFIF IESTG+L PE LFTEAVKILE
Sbjct: 309 ATVAQPRKCTLCKECVR-DDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEA 367
Query: 373 KCERV 377
KCE +
Sbjct: 368 KCEAI 372
>DICTYBASE|DDB_G0282339 [details] [associations]
symbol:rpa5 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISS] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 dictyBase:DDB_G0282339
EMBL:AAFI02000047 GenomeReviews:CM000152_GR GO:GO:0003677
GO:GO:0006383 GO:GO:0006360 GO:GO:0005736 GO:GO:0005666
GO:GO:0003899 eggNOG:COG0202 KO:K03027 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
RefSeq:XP_640267.1 ProteinModelPortal:Q54SN4 STRING:Q54SN4
PRIDE:Q54SN4 EnsemblProtists:DDB0216288 GeneID:8623528
KEGG:ddi:DDB_G0282339 ProtClustDB:CLSZ2729016 Uniprot:Q54SN4
Length = 345
Score = 384 (140.2 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
Identities = 78/181 (43%), Positives = 114/181 (62%)
Query: 30 PHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDME 89
P++E +RT+V + YSGAY S+G DNS L+ F NF++ ++ + +++
Sbjct: 13 PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F++IGIDA IANA RRI+I+E+PTMAIEKV I NNTS++QDEVLAHRLG+IPI VDPR F
Sbjct: 73 FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERG---GPRL--TVKTNELKWLPNGSELPLETKPDSN 204
+ N ++T++F+L V CE+ G + T + L W+P + + +
Sbjct: 133 NFKLPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQEEMFPNEEDR 192
Query: 205 P 205
P
Sbjct: 193 P 193
Score = 341 (125.1 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
Identities = 73/172 (42%), Positives = 97/172 (56%)
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
SK + +++ P + P RPM D I I +L PGQ I+++ + K IG+ H KWS
Sbjct: 171 SKHLIWVPTQDQEEMFPNEEDRP-RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREHIKWS 229
Query: 266 PVATAWYRMLPXXXXXXXXXXXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PV TA YR+ P + CP VFDIED G + A+P CT+CR
Sbjct: 230 PVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIEDSG----QVVAARPLDCTMCR 285
Query: 326 ECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
EC+R E+E+ V I RV+DHFIF+IESTGAL +F EA+KI +KC V
Sbjct: 286 ECIR-DPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCNIV 336
>UNIPROTKB|Q32L22 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:BC109803 IPI:IPI00709012
RefSeq:NP_001033213.1 UniGene:Bt.42189 ProteinModelPortal:Q32L22
STRING:Q32L22 PRIDE:Q32L22 Ensembl:ENSBTAT00000025246 GeneID:516337
KEGG:bta:516337 CTD:9533 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
HOVERGEN:HBG017743 InParanoid:Q32L22 KO:K03027 OMA:GKCQRFL
OrthoDB:EOG47SSF0 NextBio:20872197 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 Uniprot:Q32L22
Length = 346
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 156/351 (44%), Positives = 213/351 (60%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y+ G D++ D F NFRV+V+ + ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
++ D E +T+ F+L V C R P +++ PN E + ++
Sbjct: 125 RNQGDEGGTEIDTLQFRLQVRCTRN-PHAAKDSSD----PN------ELYVNHRVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADLFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPXXXXXXXXXXXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP + V ++++I GKK A VA PR T RE R
Sbjct: 232 SYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFR- 289
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E+ +K V + RV+DHFIF++ESTG L P+ L +EA+K+L KC+R + EL
Sbjct: 290 NEKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
>UNIPROTKB|E2RH57 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 CTD:9533 GeneTree:ENSGT00550000075060 KO:K03027
OMA:GKCQRFL Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AAEX03008344 RefSeq:XP_532147.1 ProteinModelPortal:E2RH57
Ensembl:ENSCAFT00000002964 GeneID:474912 KEGG:cfa:474912
NextBio:20850849 Uniprot:E2RH57
Length = 346
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 154/336 (45%), Positives = 212/336 (63%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE-NDTSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ +D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDDEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ PN EL + K S+ T+ + DL PE
Sbjct: 140 FRLQVRCTRN-PHAAKDSSD----PN--ELYVNHKV----YSRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXX 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 XXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GDAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-KEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>MGI|MGI:103288 [details] [associations]
symbol:Polr1c "polymerase (RNA) I polypeptide C"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] Reactome:REACT_78136
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 MGI:MGI:103288 GO:GO:0005654
GO:GO:0003677 GO:GO:0006351 EMBL:CH466559 GO:GO:0003899
Reactome:REACT_86751 CleanEx:MM_POLR1E CTD:9533 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOVERGEN:HBG017743 KO:K03027
OMA:GKCQRFL OrthoDB:EOG47SSF0 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 EMBL:D31966 EMBL:AK132114 EMBL:AK146240
IPI:IPI00816991 PIR:A55082 RefSeq:NP_033111.2 UniGene:Mm.3458
ProteinModelPortal:P52432 SMR:P52432 STRING:P52432
PhosphoSite:P52432 PaxDb:P52432 PRIDE:P52432
Ensembl:ENSMUST00000087026 GeneID:20016 KEGG:mmu:20016
InParanoid:Q3UJZ9 NextBio:297517 Bgee:P52432 Genevestigator:P52432
GermOnline:ENSMUSG00000067148 Uniprot:P52432
Length = 346
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 156/351 (44%), Positives = 215/351 (61%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G YA G D++ + F NFRV+V+++ +D +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
++ + E +T+ F+L V C R P +++ PN EL + K ++
Sbjct: 125 RNQGEEEGTEIDTLQFRLQVRCTRN-PNAAKDSSD----PN--ELYVNHKV----YTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPXXXXXXXXXXXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP + V ++E++ GKK A VA R T RE R
Sbjct: 232 SYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREIFR- 289
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E+ +K V + RV+DH+IF++ESTG L P+ L +EA+KIL KC R + EL
Sbjct: 290 HEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
>UNIPROTKB|O15160 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005654 GO:GO:0003677 Reactome:REACT_1788
GO:GO:0006363 GO:GO:0006362 GO:GO:0006361 GO:GO:0005736
GO:GO:0003899 GO:GO:0006386 GO:GO:0006385 EMBL:AL355802
CleanEx:HS_POLR1E CTD:9533 eggNOG:COG0202 HOGENOM:HOG000230845
HOVERGEN:HBG017743 KO:K03027 OMA:GKCQRFL Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 EMBL:AF008442 EMBL:AF047441
EMBL:BC008863 IPI:IPI00005179 IPI:IPI00217386 RefSeq:NP_976035.1
UniGene:Hs.584839 ProteinModelPortal:O15160 SMR:O15160
DIP:DIP-27587N IntAct:O15160 MINT:MINT-1137932 STRING:O15160
PhosphoSite:O15160 REPRODUCTION-2DPAGE:IPI00217386
SWISS-2DPAGE:O15160 PaxDb:O15160 PRIDE:O15160 DNASU:9533
Ensembl:ENST00000304004 Ensembl:ENST00000372389 GeneID:9533
KEGG:hsa:9533 UCSC:uc003ovn.3 UCSC:uc003ovo.2 GeneCards:GC06P043484
H-InvDB:HIX0005907 HGNC:HGNC:20194 HPA:HPA031010 MIM:248390
MIM:610060 neXtProt:NX_O15160 Orphanet:861 PharmGKB:PA134882004
InParanoid:O15160 PhylomeDB:O15160 GenomeRNAi:9533 NextBio:35740
ArrayExpress:O15160 Bgee:O15160 CleanEx:HS_POLR1C
Genevestigator:O15160 GermOnline:ENSG00000171453 Uniprot:O15160
Length = 346
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 153/336 (45%), Positives = 211/336 (62%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN-EKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ PN EL + K ++ T+ + DL PE
Sbjct: 140 FRLQVRCTRN-PHAAKDSSD----PN--ELYVNHKV----YTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXX 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 XXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>UNIPROTKB|Q5RJK9 [details] [associations]
symbol:Polr1c "Protein Polr1c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CH473987 CTD:9533 eggNOG:COG0202 GeneTree:ENSGT00550000075060
HOGENOM:HOG000230845 HOVERGEN:HBG017743 KO:K03027 OrthoDB:EOG47SSF0
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL
RGD:1309689 EMBL:BC086597 IPI:IPI00373754 RefSeq:NP_001008331.1
UniGene:Rn.107990 STRING:Q5RJK9 Ensembl:ENSRNOT00000025787
GeneID:301246 KEGG:rno:301246 InParanoid:Q5RJK9 NextBio:648381
Genevestigator:Q5RJK9 Uniprot:Q5RJK9
Length = 346
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 154/351 (43%), Positives = 211/351 (60%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y+ G D++ D F NFRV+V+ + + +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDESTLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ + E +T+ F+L V C R P +++ PN EL + K ++
Sbjct: 125 RNPGEEEGTEIDTLQFRLQVRCTRN-PSAAKDSSD----PN--ELYVNHKV----YTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADVFPEGTVRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPXXXXXXXXXXXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP + V ++++ GKK A VA R T RE R
Sbjct: 232 SYRLLPDITLLEPVEGEAAEELSQCFSPGVIAVQEV-QGKKVARVANARLDTFSREIFR- 289
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E+ +K V + RV+DH+IF++ESTG L P+ L +EA+KIL KC R + EL
Sbjct: 290 HEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
>UNIPROTKB|F1RRJ4 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CU928765 GeneTree:ENSGT00550000075060 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
Ensembl:ENSSSCT00000028506 ArrayExpress:F1RRJ4 Uniprot:F1RRJ4
Length = 351
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 152/336 (45%), Positives = 208/336 (61%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 29 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 84
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN-EKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY + D E +T+
Sbjct: 85 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNLGDEEGTEIDTLQ 144
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ PN EL + K ++ T+ + DL PE
Sbjct: 145 FRLQVRCTRN-PSAAKDSSD----PN--ELYVNHKV----YTRHMTWVPLGNQADLFPEG 193
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXX 285
+ P+ DI IA+L PGQEI+L VKGIGK HAK+SPVATA YR+LP
Sbjct: 194 TIRPVHD--DILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 251
Query: 286 XXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ V ++++I GKK A VA PR T RE R + +K V + RV+D
Sbjct: 252 GDAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFR-NDMLKKVVRLARVRD 309
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 310 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 345
>UNIPROTKB|E1C548 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 CTD:9533
GeneTree:ENSGT00550000075060 KO:K03027 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AADN02011864 IPI:IPI00572554 RefSeq:XP_419502.1
UniGene:Gga.1059 Ensembl:ENSGALT00000016848 GeneID:421452
KEGG:gga:421452 NextBio:20824218 Uniprot:E1C548
Length = 346
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 152/336 (45%), Positives = 202/336 (60%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G D++ F FRV+V+R +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYP--GYDDAWDQRRFEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN-EKNTIV 165
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L + C R P+ ++++ PN EL K SK T+ + DL P+
Sbjct: 140 FQLKIKCSRN-PQAAKESSD----PN--ELYFNHKV----YSKHMTWVPLGNQTDLFPDA 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXX 285
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP
Sbjct: 189 DFRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVE 246
Query: 286 XXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
K V +I++I GKK A VA R T RE R E + V + RV++
Sbjct: 247 DEAAETLQKCFSPGVIEIQNI-KGKKVARVANARLDTFSREVFR-HEGLKNLVRLARVRN 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L TEA+KIL KC+R + EL
Sbjct: 305 HYIFSVESTGILPPDVLVTEAIKILMGKCQRFLNEL 340
>ZFIN|ZDB-GENE-040426-1495 [details] [associations]
symbol:polr1c "polymerase (RNA) I polypeptide C"
species:7955 "Danio rerio" [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 ZFIN:ZDB-GENE-040426-1495
GO:GO:0003677 GO:GO:0006351 EMBL:AL928951 GO:GO:0003899
eggNOG:COG0202 GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
HOVERGEN:HBG017743 OMA:GKCQRFL OrthoDB:EOG47SSF0
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 IPI:IPI00491988
Ensembl:ENSDART00000128246 InParanoid:A2ATX1 Uniprot:A2ATX1
Length = 362
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 147/336 (43%), Positives = 200/336 (59%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ + F NFR+E+I ++ +EFD+IGIDAAIANAFRRI
Sbjct: 40 VHTTD--YPGNYP--GYDDTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRI 95
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIV 165
L+AE+PTMAIEKV I NNTS+IQDE+LAHRLGL+PI DPRLFEY SE+ E +TI
Sbjct: 96 LLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEIDTIQ 155
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L V C R PR P S P E + S + + D+ +
Sbjct: 156 LQLKVKCTRN-PRA----------PKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADA 204
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXX 285
P+ DI +A++ PGQE+++ H VKGIGK HAK+SPVATA YR+LP
Sbjct: 205 KIGPVHG--DILLAQVRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLLQTIE 262
Query: 286 XXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ V ++E++ +G+K A V R T RE LR ++ + V + RV+D
Sbjct: 263 GEQAERLKRCFSPGVIELENV-NGRKVAKVVNSRLDTCSREVLR-HDDLKSLVKLGRVRD 320
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
HFIF++ESTG L P+ L TEA+ +L KC++ +TEL
Sbjct: 321 HFIFSVESTGILPPDVLVTEAINVLMSKCQKFLTEL 356
>UNIPROTKB|E7EQB9 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 HGNC:HGNC:20194
IPI:IPI00552946 ProteinModelPortal:E7EQB9 SMR:E7EQB9
Ensembl:ENST00000372344 ArrayExpress:E7EQB9 Bgee:E7EQB9
Uniprot:E7EQB9
Length = 296
Score = 454 (164.9 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 103/218 (47%), Positives = 142/218 (65%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN-EKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ PN EL + K ++ T+ + DL PE
Sbjct: 140 FRLQVRCTRN-PHAAKDSSD----PN--ELYVNHKV----YTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+ P+ DI IA+L PGQEI+L H VKGIGK A+
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKKVAR 224
Score = 183 (69.5 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 38/75 (50%), Positives = 50/75 (66%)
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
G GKK A VA PR T RE R E+ +K V + RV+DH+IF++ESTG L P+ L +EA
Sbjct: 217 GIGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEA 275
Query: 367 VKILEDKCERVITEL 381
+K+L KC R + EL
Sbjct: 276 IKVLMGKCRRFLDEL 290
>POMBASE|SPBC1289.07c [details] [associations]
symbol:rpc40 "DNA-directed RNA polymerase I and III
subunit Rpc40" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IGI] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=IGI] [GO:0006995 "cellular
response to nitrogen starvation" evidence=IMP] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IGI]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 PomBase:SPBC1289.07c GO:GO:0005829
GO:GO:0070317 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006995 GO:GO:0006383 GO:GO:0006360 GO:GO:0005736
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0202 HOGENOM:HOG000230845
KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AF082512 EMBL:AB021859 PIR:T39358 RefSeq:NP_596831.1
ProteinModelPortal:O94616 DIP:DIP-29538N STRING:O94616
EnsemblFungi:SPBC1289.07c.1 GeneID:2539663 KEGG:spo:SPBC1289.07c
OMA:TVSRECL OrthoDB:EOG4VX5F0 NextBio:20800817 Uniprot:O94616
Length = 348
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 142/356 (39%), Positives = 206/356 (57%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++ RT + D +V + G Y DN LD F N +V + L ++ M F+
Sbjct: 4 VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 61
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ GIDA+IANAFRRILIAE+PT+A E V I NNTS+IQDEVL+HR+GL+PI DP +F++
Sbjct: 62 ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 121
Query: 152 MS-----ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
+ T + +T+VF L+ CE T + + + N SE+ +
Sbjct: 122 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVN-SEVY-----SGDLI 175
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
KP+ Q+ F++NPIR + DI +A+L PGQEI+LEAHA+ GIG+ HAK+S
Sbjct: 176 WKPQ------GRQE--ERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFS 227
Query: 266 PVATAWYRMLPXXXXXXXXXXXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PVATA YR+LP K P V ++E+ GKK+A VA R T+ R
Sbjct: 228 PVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARVADVRKDTVSR 287
Query: 326 ECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
ECLR E+ +V + RV+DH++F++ESTG + P+ LF +++ +L+ KC V + L
Sbjct: 288 ECLR-HPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKCLAVKSSL 342
>SGD|S000006314 [details] [associations]
symbol:RPC40 "RNA polymerase subunit AC40" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IC] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
SGD:S000006314 GO:GO:0003677 EMBL:BK006949 GO:GO:0006360
EMBL:U32445 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 Reactome:REACT_87991 GO:GO:0042797
eggNOG:COG0202 GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
OMA:TVSRECL OrthoDB:EOG4VX5F0 EMBL:M15499 PIR:A25968
RefSeq:NP_015435.1 ProteinModelPortal:P07703 SMR:P07703 DIP:DIP-17N
IntAct:P07703 MINT:MINT-395916 STRING:P07703 PaxDb:P07703
PeptideAtlas:P07703 EnsemblFungi:YPR110C GeneID:856226
KEGG:sce:YPR110C CYGD:YPR110c NextBio:981464 Genevestigator:P07703
GermOnline:YPR110C Uniprot:P07703
Length = 335
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 128/320 (40%), Positives = 180/320 (56%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD 235
P + + K L N + + D + R T+F+ P +P D
Sbjct: 144 -PDAPKGSTDPKELYNNAHVYAR---DLKFEPQGRQSTTFADC----PVVPADP-----D 190
Query: 236 ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXXKT 295
I +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP K
Sbjct: 191 ILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKC 250
Query: 296 CPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTG 355
P V I++ G A V R T+ RE LR EE+ +V + RV++HFIF +ES G
Sbjct: 251 FPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFIFNVESAG 306
Query: 356 ALSPETLFTEAVKILEDKCE 375
A++PE +F ++V+IL++K E
Sbjct: 307 AMTPEEIFFKSVRILKNKAE 326
>CGD|CAL0005950 [details] [associations]
symbol:RPC40 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IEA] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 CGD:CAL0005950 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0003899
eggNOG:COG0202 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 RefSeq:XP_714923.1 RefSeq:XP_714986.1
ProteinModelPortal:Q59ZF5 STRING:Q59ZF5 GeneID:3643382
GeneID:3643427 KEGG:cal:CaO19.11048 KEGG:cal:CaO19.3564
Uniprot:Q59ZF5
Length = 369
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 136/349 (38%), Positives = 188/349 (53%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H +N G Y S ++ F N F +++ L++ FD
Sbjct: 42 IEYNRVTNTTSTDFPGHQQN----GDY-------SWDIEKFKNKFEIKITNLSERTGTFD 90
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+IAE+P++A E V + NTSVIQDEVLA R+GLIP +DP +
Sbjct: 91 LIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDPDKLTW 150
Query: 152 MSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E ND E NTIV L V C + P P S P E +S+ +
Sbjct: 151 VDETVDINDRFTEDNTIVLSLDVACSKN-PHA----------PKNSTDPRELYKNSHVYA 199
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + + ++ +F + P+ P DI +A+L PGQEI L AH V GIG HAK+SP
Sbjct: 200 KDFKFEPHGNQEE---KFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSP 256
Query: 267 VATAWYRMLPXXXXXXXXXXXXXXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP K P V I+ +GK A V R T+ RE
Sbjct: 257 VATASYRLLPVIDIKEPITGELAKKFQKCFPPGVIGID--ANGK--AYVKDARKDTVSRE 312
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR E++ +V + R +DHFIF +ESTGA+ P +F ++V++L++K E
Sbjct: 313 VLR-HPEFDGKVQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAE 360
>FB|FBgn0031657 [details] [associations]
symbol:CG3756 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;NAS] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=NAS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=NAS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 GO:GO:0005875 EMBL:AE014134 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202
GeneTree:ENSGT00550000075060 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL EMBL:AY119625
RefSeq:NP_608885.1 UniGene:Dm.30765 SMR:Q9VMX3 IntAct:Q9VMX3
MINT:MINT-1550361 STRING:Q9VMX3 EnsemblMetazoa:FBtr0078994
GeneID:33712 KEGG:dme:Dmel_CG3756 UCSC:CG3756-RA
FlyBase:FBgn0031657 InParanoid:Q9VMX3 OrthoDB:EOG4X95ZS
GenomeRNAi:33712 NextBio:784915 Uniprot:Q9VMX3
Length = 333
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 121/320 (37%), Positives = 177/320 (55%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ + F ++++R +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 29 DDVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS--NEKNTIVFKLHVLCERGGPRLTV 181
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ F+L V C R
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSR------- 141
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARL 241
+ + K N ++ K S + + E + N I DI IA+L
Sbjct: 142 RRDAGKDQSNFDDIYKNHKVYSGHLK----WLPKGKQAQIYSESAVNCIHD--DILIAQL 195
Query: 242 GPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXXKTCPVNVF 301
PG E++L AVKG+G+ HAK+SPVATA YR+LP V
Sbjct: 196 RPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLLQNCFSPGVI 255
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
I++ + A V R T R R + V++ R++DH+IF++ES GAL P+
Sbjct: 256 GIDE----NETAYVKDARYDTCSRNVYRY-PQLNDAVTLARIRDHYIFSVESVGALKPDV 310
Query: 362 LFTEAVKILEDKCERVITEL 381
+F EAVK+L+ KC +I E+
Sbjct: 311 IFLEAVKVLKRKCRALIDEI 330
>UNIPROTKB|F1LXY3 [details] [associations]
symbol:Polr1c "Protein Polr1c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
IPI:IPI00948748 Ensembl:ENSRNOT00000067036 RGD:1309689
ArrayExpress:F1LXY3 Uniprot:F1LXY3
Length = 260
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 116/269 (43%), Positives = 159/269 (59%)
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN-EKNTIVFKLHVLC 172
+A+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY + + E +T+ F+L V C
Sbjct: 1 VAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNPGEEEGTEIDTLQFRLQVRC 60
Query: 173 ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP 232
R P +++ PN EL + K ++ T+ + D+ PE + P+
Sbjct: 61 TRN-PSAAKDSSD----PN--ELYVNHKV----YTRHMTWVPLGNQADVFPEGTVRPVHD 109
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXX 292
DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP
Sbjct: 110 --DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEEL 167
Query: 293 XKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
+ V ++++ GKK A VA R T RE R E+ +K V + RV+DH+IF++E
Sbjct: 168 SQCFSPGVIAVQEV-QGKKVARVANARLDTFSREIFR-HEKLKKAVRLARVRDHYIFSVE 225
Query: 353 STGALSPETLFTEAVKILEDKCERVITEL 381
STG L P+ L +EA+KIL KC R + EL
Sbjct: 226 STGVLPPDVLVSEAIKILMGKCRRFLDEL 254
>WB|WBGene00019275 [details] [associations]
symbol:rpac-40 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 SMART:SM00662 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845 KO:K03027
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL
EMBL:FO081035 RefSeq:NP_504166.2 ProteinModelPortal:Q9UAY9
SMR:Q9UAY9 STRING:Q9UAY9 PaxDb:Q9UAY9 EnsemblMetazoa:H43I07.2
GeneID:178823 KEGG:cel:CELE_H43I07.2 UCSC:H43I07.2 CTD:178823
WormBase:H43I07.2 InParanoid:Q9UAY9 NextBio:902702 Uniprot:Q9UAY9
Length = 366
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 132/326 (40%), Positives = 174/326 (53%)
Query: 64 DNSLQLD--HFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
D++ Q D +C+ +V ++ + D M EFD+ I+A IANA RR+LIAE+PTMA+EK+
Sbjct: 40 DDTKQFDINEYCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKI 99
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER---G 175
+ NTSVIQDEVL HRLGL+P+ VDPR F++ E NEK V C+ G
Sbjct: 100 YLYQNTSVIQDEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKG-------VDCDEEPEG 152
Query: 176 GP--RLTVKTNELKWLPNGSELPLETKPDS---NPSSKPRTYTSFSSSQDLLPEFSNNPI 230
P L K N + N + +P T P N S R + + D +F+
Sbjct: 153 DPAKNLIFKIN-VSCTKNRNAVPTATDPKQLYHNSSVYSRAF-EWVPIADQKTQFTEEAH 210
Query: 231 RPML--DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXXXXX 288
M+ DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP
Sbjct: 211 PRMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEA 270
Query: 289 XXXXXKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V IE G+ K+ A V R T R R E+ K V + + K HFI
Sbjct: 271 AERLKSVFSEGVIAIEKKGA-KRIAVVKDARKDTCSRNVFR-HEDLSKVVQLGKNKQHFI 328
Query: 349 FTIESTGALSPETLFTEAVKILEDKC 374
F++ESTGAL L EA K++E KC
Sbjct: 329 FSVESTGALKSSELVVEACKVMEIKC 354
>ASPGD|ASPL0000043748 [details] [associations]
symbol:AN2415 species:162425 "Emericella nidulans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEA] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 EMBL:BN001307
GO:GO:0006351 GO:GO:0003899 EMBL:AACD01000039 eggNOG:COG0202
HOGENOM:HOG000230845 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:TVSRECL OrthoDB:EOG4VX5F0 RefSeq:XP_660019.1
ProteinModelPortal:Q5BAL5 STRING:Q5BAL5
EnsemblFungi:CADANIAT00009122 GeneID:2874697 KEGG:ani:AN2415.2
Uniprot:Q5BAL5
Length = 373
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 137/374 (36%), Positives = 196/374 (52%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P H E +R R V N + + + + G + G + LD F + FRV+ + K
Sbjct: 5 VPSHEELERRRIVNVNAETVTNIASTDFPGHWP--GESHEWNLDKFRDGFRVDFHQNKKF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+DA+IANAFRRI++AE+PT+AIE V I NNTSVIQDEVLA RLGLIP+
Sbjct: 63 EASFSLIGLDASIANAFRRIVMAEVPTLAIEWVYIHNNTSVIQDEVLAQRLGLIPLQGSV 122
Query: 147 RLFEYM------SENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
+M SE++ + + NT+V +L V C + +T+ K N
Sbjct: 123 EGLNWMQWYNKGSEDEPGSGSDLADYNTVVLRLDVECTKNPNASRDETDPRKLYKNAHVY 182
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ +P + + F+ E + + P DI +A+L PGQ+IELE H +K
Sbjct: 183 AKDIV--FHPVGRQEEF--FTG------EGAIRAVNP--DILVAKLRPGQKIELEMHCIK 230
Query: 256 GIGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXXKTCPVNVFDIEDIGS------- 308
GIG HAK+SPVATA YR++P K P V +E I +
Sbjct: 231 GIGADHAKFSPVATATYRLMPVIQILRPIIGEDAKKFAKCFPKGVIGLEPITAEDERQNA 290
Query: 309 ------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETL 362
G+ +A V T+ RECLR +E++ +V + R++DHFIF IESTG + L
Sbjct: 291 EYRGRGGELKAVVRDAFNDTVSRECLR-HDEFKGKVKLGRIRDHFIFNIESTGQFDSDVL 349
Query: 363 FTEAVKILEDKCER 376
F E+VK+L+ KC R
Sbjct: 350 FLESVKVLKLKCAR 363
>UNIPROTKB|G4MQN0 [details] [associations]
symbol:MGG_09284 "DNA-directed RNA polymerase I and III
subunit RPAC1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:CM001231
GO:GO:0043581 GO:GO:0003899 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 RefSeq:XP_003709929.1
EnsemblFungi:MGG_09284T0 GeneID:2680208 KEGG:mgr:MGG_09284
Uniprot:G4MQN0
Length = 373
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 132/370 (35%), Positives = 193/370 (52%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + +T + Y GA+ G +++ ++ F + ++ + F LIG
Sbjct: 14 RRKLVGINKETVTNTISTDYPGAH--YGEEHAWDVNEFSQHLNIQFHQNDPSLASFSLIG 71
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-LFEYM- 152
+DA+IANAFRRI+IAE+P++AIE+V I NNTSVIQDEVLA RLGL+P+ L ++M
Sbjct: 72 VDASIANAFRRIMIAEIPSLAIERVFITNNTSVIQDEVLAQRLGLVPLKGSKEGLRKFMK 131
Query: 153 ----SEN---DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL-PLETKPDSN 204
+E D S + NT+ +L+V C R P N+ PN + + P D
Sbjct: 132 PFKRTETGGFDNSFDFNTVNLRLNVKCTRN-PDAKPGEND----PNKAYIKPNVYASDIE 186
Query: 205 --PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
P+ + Y FS ++P NP DI IA+L PGQ I+LE HA G G HA
Sbjct: 187 FVPAGQQTDY--FSGDGAIVPV---NP-----DILIAKLRPGQGIDLEMHAHIGYGWDHA 236
Query: 263 KWSPVATAWYRMLPXXXXXXXXXXXXXXXXXKTC---------PVNVFDIEDIGSG---- 309
K+SPV TA YR++P + C PV + ++ GSG
Sbjct: 237 KFSPVCTASYRLMPIIDIVKPIVGADAEKF-RDCFPDGVIRLQPVTAAEAKEKGSGYEGH 295
Query: 310 --KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +A V P T+ RECLR E +E +V + R +DHFIF+IES G + LF ++
Sbjct: 296 KGEMKAVVNDPMRDTVSRECLRHAE-FEGKVKLGRRRDHFIFSIESAGQWDSDELFLASI 354
Query: 368 KILEDKCERV 377
L+ KC+++
Sbjct: 355 AELKSKCKKL 364
>UNIPROTKB|H0Y723 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 HGNC:HGNC:20194
ProteinModelPortal:H0Y723 Ensembl:ENST00000423780 Uniprot:H0Y723
Length = 140
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 64/108 (59%), Positives = 87/108 (80%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQ 127
>UNIPROTKB|D6RDJ3 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
OrthoDB:EOG47SSF0 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 HGNC:HGNC:20194 IPI:IPI00966384
ProteinModelPortal:D6RDJ3 SMR:D6RDJ3 Ensembl:ENST00000428025
ArrayExpress:D6RDJ3 Bgee:D6RDJ3 Uniprot:D6RDJ3
Length = 124
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 59/93 (63%), Positives = 77/93 (82%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ ++ +EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI
Sbjct: 1 MDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI 60
Query: 143 IVDPRLFEYMSENDTSN-EKNTIVFKLHVLCER 174
DPRLFEY ++ D E +T+ F+L V C R
Sbjct: 61 HADPRLFEYRNQGDEEGTEIDTLQFRLQVRCTR 93
>WB|WBGene00007971 [details] [associations]
symbol:rpb-3 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 EMBL:Z80215 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0003677 GO:GO:0040011 GO:GO:0000003
GO:GO:0006351 GO:GO:0003899 KO:K03011 GO:GO:0001703 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
PIR:T19774 RefSeq:NP_492361.2 UniGene:Cel.32712
ProteinModelPortal:Q93338 SMR:Q93338 STRING:Q93338 PaxDb:Q93338
EnsemblMetazoa:C36B1.3 GeneID:172680 KEGG:cel:CELE_C36B1.3
UCSC:C36B1.3 CTD:172680 WormBase:C36B1.3 InParanoid:Q93338
NextBio:876551 Uniprot:Q93338
Length = 282
Score = 263 (97.6 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 71/199 (35%), Positives = 108/199 (54%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +EV LT D ++F L D ++AN+ RR+ +AE+PT+AI+ V I NTSV+ DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP I D + +Y + + + ++ +I F L + C + L V T L
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQMKC-KDEATLAVTTEHLM 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+ N L +P + + R S++D EF N +I I +L GQE+
Sbjct: 122 PMHN---LDTTVRPACGKALRER-----GSTRD---EFHNRE-----EILIVKLRKGQEL 165
Query: 248 ELEAHAVKGIGKTHAKWSP 266
L+A+ KG GK HAKW+P
Sbjct: 166 NLKAYVKKGFGKEHAKWNP 184
Score = 62 (26.9 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 347 FIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
F F+IE TGAL + + T + IL+ K E + LS
Sbjct: 237 FWFSIEGTGALPAQRIVTMGIGILKRKLEELNMALS 272
>TAIR|locus:2047198 [details] [associations]
symbol:NRPE3B species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000419 "DNA-directed RNA polymerase V complex" evidence=IPI]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IPI] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AC006920 GO:GO:0000419 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 ProtClustDB:CLSN2683582 EMBL:L34771
EMBL:BT005715 EMBL:BT006072 IPI:IPI00547850 PIR:E84528 PIR:S71177
RefSeq:NP_179142.1 UniGene:At.40419 ProteinModelPortal:Q39212
SMR:Q39212 IntAct:Q39212 STRING:Q39212 PaxDb:Q39212 PRIDE:Q39212
EnsemblPlants:AT2G15400.1 GeneID:816032 KEGG:ath:AT2G15400
TAIR:At2g15400 InParanoid:Q39212 OMA:GFVYYKY PhylomeDB:Q39212
Genevestigator:Q39212 GermOnline:AT2G15400 Uniprot:Q39212
Length = 319
Score = 198 (74.8 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 61/181 (33%), Positives = 86/181 (47%)
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
++P+ P +TS SS+ D S + I IA+L GQE++L+A A KGIGK HA
Sbjct: 128 ADPTVTPVDFTSNSSTSDS----SEHK-----GIIIAKLRRGQELKLKALARKGIGKDHA 178
Query: 263 KWSPVATAWYRMLPXXXXXXXXXXXXXXXXX----KTCPVNVFDIEDIGSGKKRATVAQP 318
KWSP AT Y P ++ P VF I+ + +G+ V P
Sbjct: 179 KWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPV-TGQ--VVVVDP 235
Query: 319 RACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
A T E ++ E K + I D F+FT+ESTGAL L A+ IL+ K +
Sbjct: 236 EAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDA 295
Query: 377 V 377
+
Sbjct: 296 I 296
Score = 151 (58.2 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PTMAI V I N+SV+ DE +A RL L
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSL 73
Query: 140 IPI 142
IP+
Sbjct: 74 IPL 76
>TAIR|locus:2047168 [details] [associations]
symbol:NRPB3 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IPI] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IPI] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IPI] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03011
EMBL:AC006920 GO:GO:0000418 GO:GO:0000419 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:L34770 EMBL:AY063965 EMBL:AY096406 IPI:IPI00544466 PIR:S71176
RefSeq:NP_179145.1 UniGene:At.27427 ProteinModelPortal:Q39211
SMR:Q39211 IntAct:Q39211 STRING:Q39211 PaxDb:Q39211 PRIDE:Q39211
EnsemblPlants:AT2G15430.1 GeneID:816035 KEGG:ath:AT2G15430
TAIR:At2g15430 HOGENOM:HOG000230844 InParanoid:Q39211 OMA:KWQAGVA
PhylomeDB:Q39211 ProtClustDB:CLSN2683582 Genevestigator:Q39211
GermOnline:AT2G15430 Uniprot:Q39211
Length = 319
Score = 180 (68.4 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 49/148 (33%), Positives = 69/148 (46%)
Query: 236 ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXX-- 293
I I +L GQE++L A A KGIGK HAKWSP AT + P
Sbjct: 152 IIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKID 211
Query: 294 --KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIF 349
++ P VF ++ + ++ V P A T E ++ E K + I D FIF
Sbjct: 212 LIESSPTKVFGMDPV---TRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIF 268
Query: 350 TIESTGALSPETLFTEAVKILEDKCERV 377
T+ESTGA+ L A+ +L+ K + V
Sbjct: 269 TVESTGAVKASQLVLNAIDLLKQKLDAV 296
Score = 162 (62.1 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 34/63 (53%), Positives = 48/63 (76%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPI 142
IP+
Sbjct: 74 IPL 76
>FB|FBgn0026373 [details] [associations]
symbol:RpII33 "RNA polymerase II 33kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS;NAS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0034605 "cellular response to heat" evidence=IEP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005703 "polytene chromosome puff"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0005737 GO:GO:0005875 GO:GO:0034605 EMBL:AE014134
GO:GO:0003677 GO:GO:0006366 GO:GO:0005703 GO:GO:0003899 KO:K03011
GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
EMBL:AY060644 EMBL:AJ133650 RefSeq:NP_477419.1 UniGene:Dm.3412
HSSP:P16370 SMR:O97183 IntAct:O97183 MINT:MINT-801436 STRING:O97183
EnsemblMetazoa:FBtr0080544 GeneID:34796 KEGG:dme:Dmel_CG7885
UCSC:CG7885-RA CTD:34796 FlyBase:FBgn0026373 InParanoid:O97183
OrthoDB:EOG441NT4 GenomeRNAi:34796 NextBio:790263 Uniprot:O97183
Length = 275
Score = 178 (67.7 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 46/133 (34%), Positives = 76/133 (57%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + +Y + + + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETK 200
N LP+ ++
Sbjct: 122 -SSNAKVLPVTSR 133
Score = 104 (41.7 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 235 DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+I I +L GQE++L A+A KG GK HAKW+P A + P
Sbjct: 148 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 189
Score = 81 (33.6 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 332 EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+++E + + F F +ES GAL PE + V++L++K + T+LS
Sbjct: 215 DQYEAPYNWEAKPNKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQTQLS 265
>UNIPROTKB|I3LCH3 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:FP326735
RefSeq:XP_003355849.1 Ensembl:ENSSSCT00000024584 GeneID:100620737
KEGG:ssc:100620737 Uniprot:I3LCH3
Length = 275
Score = 176 (67.0 bits), Expect = 2.5e-23, Sum P(3) = 2.5e-23
Identities = 47/141 (33%), Positives = 79/141 (56%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKP-DSNPS 206
+ N +P+ ++ D++PS
Sbjct: 121 -ISNSPRVIPVTSRNRDNDPS 140
Score = 107 (42.7 bits), Expect = 2.5e-23, Sum P(3) = 2.5e-23
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 235 DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
DI I +L GQE+ L A+A KG GK HAKW+P A
Sbjct: 147 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Score = 68 (29.0 bits), Expect = 2.5e-23, Sum P(3) = 2.5e-23
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F + +ES G+L PET+ A+ L+ K + T+LS
Sbjct: 227 ERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLS 264
>UNIPROTKB|Q57648 [details] [associations]
symbol:rpoD "DNA-directed RNA polymerase subunit D"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00320 InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 InterPro:IPR022842 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
EMBL:L77117 GenomeReviews:L77117_GR GO:GO:0003899 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 PIR:A64324
RefSeq:NP_247160.1 ProteinModelPortal:Q57648 IntAct:Q57648
GeneID:1451040 KEGG:mja:MJ_0192 KO:K03047 OMA:HAKWQPC
ProtClustDB:PRK14979 Uniprot:Q57648
Length = 191
Score = 151 (58.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 48/108 (44%), Positives = 63/108 (58%)
Query: 82 RLTKDDMEFDLIGIDAAIA--NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
R T+ EF + + A I+ NA RRI+I+E+PT AIE V I N+S + DE+LAHRLGL
Sbjct: 8 RKTRIGEEF-IFSLKAPISFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGL 66
Query: 140 IPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
IPI P L EN+ I F L E+ GP TV +++LK
Sbjct: 67 IPIKGKPLL-----ENEV------ITFTL----EKEGP-CTVYSSDLK 98
Score = 109 (43.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
S DL E N + +I I +LG GQ I++E A+ GIGK HAKW P A Y+ +
Sbjct: 94 SSDLKSE--NGEVA-FKNIPIVKLGKGQRIQIECEAIPGIGKVHAKWQP-CNAVYKQI 147
Score = 68 (29.0 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 333 EWEKRVSI-RRVKDHFI-FTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+W+ ++ +++ D + F +E+ G + E + EAVKIL++K E + +L
Sbjct: 136 KWQPCNAVYKQIADDEVEFFVETFGQMEAEEILEEAVKILKNKAESFLQQL 186
>SGD|S000001283 [details] [associations]
symbol:RPB3 "RNA polymerase II third largest subunit B44"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 SGD:S000001283 GO:GO:0046872 GO:GO:0003677
EMBL:BK006942 EMBL:Z46881 GO:GO:0006369 GO:GO:0003899
RefSeq:NP_012243.3 GeneID:854791 KEGG:sce:YIL021W KO:K03011
GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9
PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC
PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y
PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5
PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY
PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ
PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO
PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX
PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y
PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14
PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R
PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F
PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93
PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83
PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S
PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF
PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W
PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H
PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7
PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY
PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM
PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ
PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP
PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW
PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N
PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2
PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14
PDBsum:3S15 PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N
PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B
PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G
PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M
PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
OrthoDB:EOG4DV8VZ EMBL:M27496 PIR:S49961 RefSeq:NP_012250.3
ProteinModelPortal:P16370 SMR:P16370 DIP:DIP-837N IntAct:P16370
MINT:MINT-613688 STRING:P16370 PaxDb:P16370 PeptideAtlas:P16370
EnsemblFungi:YIL021W GeneID:854799 KEGG:sce:YIL014C-A CYGD:YIL021w
EvolutionaryTrace:P16370 NextBio:977585 Genevestigator:P16370
GermOnline:YIL021W Uniprot:P16370
Length = 318
Score = 183 (69.5 bits), Expect = 5.1e-19, Sum P(3) = 5.1e-19
Identities = 35/76 (46%), Positives = 56/76 (73%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEY 151
LGLIP+ +D EY
Sbjct: 67 LGLIPLQSMDIEQLEY 82
Score = 89 (36.4 bits), Expect = 5.1e-19, Sum P(3) = 5.1e-19
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 236 ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ I +L GQE++L A KGI K HAKW P A + P
Sbjct: 142 VLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182
Score = 44 (20.5 bits), Expect = 5.1e-19, Sum P(3) = 5.1e-19
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
D F +ES G++ + + + L+ K ++ L+
Sbjct: 226 DTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALT 263
>DICTYBASE|DDB_G0292244 [details] [associations]
symbol:rpb3 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
dictyBase:DDB_G0292244 GenomeReviews:CM000155_GR GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 EMBL:AAFI02000188
GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:KWQAGVA RefSeq:XP_629750.1
ProteinModelPortal:Q54DH7 STRING:Q54DH7 PRIDE:Q54DH7
EnsemblProtists:DDB0216289 GeneID:8628579 KEGG:ddi:DDB_G0292244
ProtClustDB:CLSZ2728736 Uniprot:Q54DH7
Length = 302
Score = 225 (84.3 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 63/190 (33%), Positives = 90/190 (47%)
Query: 194 ELPLETKPDSNPSSKPRTYTS---FSSSQDLLPEFSN-NPIRPMLDITIARLGPGQEIEL 249
EL L K N +PR TS S + ++P S +I I +L GQEI+L
Sbjct: 104 ELRLNVKCTEN---RPRDVTSSDLLSQNSAVIPVSSQVTSSNSEQEIPIVKLRRGQEIKL 160
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXXK----TCPVNVFDIED 305
A A KG+GK HAKWSP A Y+ P + +CP V+
Sbjct: 161 RAIAKKGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSP 220
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETLF 363
S ++ T+ P C C EC + E + K V + + +D FIFT+ES+GAL PE +
Sbjct: 221 HQS-TQQVTIEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIV 279
Query: 364 TEAVKILEDK 373
A++I++ K
Sbjct: 280 LYAIQIIKRK 289
Score = 193 (73.0 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 46/147 (31%), Positives = 81/147 (55%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ + D + F L D ++ANA RR++IAE+PTM I+ V +N SV+ DE +AHRL
Sbjct: 14 LEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFIAHRL 73
Query: 138 GLIPIIVDP-RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP++ D F Y + S+ ++ ++ +L+V C PR ++ L N +
Sbjct: 74 GLIPLVSDNIDKFCYTRDCSCSDRCDQCSVELRLNVKCTENRPRDVTSSDLLS--QNSAV 131
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDL 221
+P+ ++ S+ S + Q++
Sbjct: 132 IPVSSQVTSSNSEQEIPIVKLRRGQEI 158
>ASPGD|ASPL0000005413 [details] [associations]
symbol:AN6252 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:AACD01000107
EMBL:BN001301 GO:GO:0003899 KO:K03011 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 OrthoDB:EOG4DV8VZ RefSeq:XP_663856.1
ProteinModelPortal:Q5AZM8 SMR:Q5AZM8 STRING:Q5AZM8
EnsemblFungi:CADANIAT00006740 GeneID:2870835 KEGG:ani:AN6252.2
OMA:EPFDYNA Uniprot:Q5AZM8
Length = 333
Score = 172 (65.6 bits), Expect = 4.4e-18, Sum P(3) = 4.4e-18
Identities = 47/128 (36%), Positives = 71/128 (55%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR+++AE+PTMAI+ V + N+SV+ DE+LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAHRLGLIPLDSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCE-----RGGPRLTVKTNEL--KWLPNGSELP 196
+ EY + + + + ++ LH C R R V T E +W+ N P
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLSLHARCTSDEIMRVYARDLVITGERANEWVGN----P 139
Query: 197 LETKPDSN 204
+ T PD N
Sbjct: 140 VITDPDGN 147
Score = 83 (34.3 bits), Expect = 4.4e-18, Sum P(3) = 4.4e-18
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
I +L GQE+++ A KGI K H+KW+P A + P
Sbjct: 151 ICKLRRGQELKMTCIAKKGIAKEHSKWAPTAAIGFEYDP 189
Score = 58 (25.5 bits), Expect = 4.4e-18, Sum P(3) = 4.4e-18
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
++F +ES G L P+ + + + +L+ K I LS
Sbjct: 233 NNFYIDVESIGNLEPDMIIQQGITVLQRKLAAAIKSLS 270
>POMBASE|SPCC1442.10c [details] [associations]
symbol:rpb3 "RNA polymerase II subunit 3" species:4896
"Schizosaccharomyces pombe" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IC] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IDA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
PomBase:SPCC1442.10c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006366 GO:GO:0003899
KO:K03011 GO:GO:0005665 PDB:3H0G PDBsum:3H0G eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 OMA:NQPTVKI EMBL:D15070 EMBL:D50661
EMBL:D50662 PIR:S43201 PIR:T40975 RefSeq:NP_588324.1
ProteinModelPortal:P37382 SMR:P37382 IntAct:P37382
MINT:MINT-1213878 STRING:P37382 EnsemblFungi:SPCC1442.10c.1
GeneID:2538816 KEGG:spo:SPCC1442.10c OrthoDB:EOG4DV8VZ
EvolutionaryTrace:P37382 NextBio:20799998 Uniprot:P37382
Length = 297
Score = 159 (61.0 bits), Expect = 7.9e-17, Sum P(3) = 7.9e-17
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + ++K+ ++F L A+AN+ RR+++AE+PT+AI+ V I NTSV+ DE LAHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 138 GLIPI 142
G+IP+
Sbjct: 67 GMIPL 71
Score = 83 (34.3 bits), Expect = 7.9e-17, Sum P(3) = 7.9e-17
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
I +L QEI L A KGI K HAKWSP + + P
Sbjct: 145 ICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDP 183
Score = 58 (25.5 bits), Expect = 7.9e-17, Sum P(3) = 7.9e-17
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 347 FIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
F +ES G++ P + + ++IL++K ++ +L
Sbjct: 229 FYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDL 263
>CGD|CAL0002919 [details] [associations]
symbol:orf19.1248 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
CGD:CAL0002919 GO:GO:0042493 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AACQ01000068 EMBL:AACQ01000067
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 RefSeq:XP_716500.1 RefSeq:XP_716556.1
ProteinModelPortal:Q5A462 SMR:Q5A462 STRING:Q5A462 GeneID:3641812
GeneID:3641858 KEGG:cal:CaO19.1248 KEGG:cal:CaO19.8832
Uniprot:Q5A462
Length = 318
Score = 175 (66.7 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 46/122 (37%), Positives = 68/122 (55%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + KD + F L +D A+AN+ RR +IAE+PT+AI+ V I NTSV+ DE L+HRL
Sbjct: 11 VTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSHRL 70
Query: 138 GLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL-KWLPNGS 193
GLIP++ +D + D K ++ +L C + V ++L K NGS
Sbjct: 71 GLIPLVSEGIDNLTYSRDCTCDNYCSKCSVTLQLIANCATEST-MNVYASDLQKMSHNGS 129
Query: 194 EL 195
+L
Sbjct: 130 KL 131
Score = 83 (34.3 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
I +L QE+ L A KGI K HAKWSP A + P
Sbjct: 146 ICKLRKHQELSLTCIAKKGIAKEHAKWSPTAAIGFEYDP 184
>UNIPROTKB|Q5A462 [details] [associations]
symbol:RPB3 "Putative uncharacterized protein RPB3"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
CGD:CAL0002919 GO:GO:0042493 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AACQ01000068 EMBL:AACQ01000067
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 RefSeq:XP_716500.1 RefSeq:XP_716556.1
ProteinModelPortal:Q5A462 SMR:Q5A462 STRING:Q5A462 GeneID:3641812
GeneID:3641858 KEGG:cal:CaO19.1248 KEGG:cal:CaO19.8832
Uniprot:Q5A462
Length = 318
Score = 175 (66.7 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 46/122 (37%), Positives = 68/122 (55%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + KD + F L +D A+AN+ RR +IAE+PT+AI+ V I NTSV+ DE L+HRL
Sbjct: 11 VTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSHRL 70
Query: 138 GLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL-KWLPNGS 193
GLIP++ +D + D K ++ +L C + V ++L K NGS
Sbjct: 71 GLIPLVSEGIDNLTYSRDCTCDNYCSKCSVTLQLIANCATEST-MNVYASDLQKMSHNGS 129
Query: 194 EL 195
+L
Sbjct: 130 KL 131
Score = 83 (34.3 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
I +L QE+ L A KGI K HAKWSP A + P
Sbjct: 146 ICKLRKHQELSLTCIAKKGIAKEHAKWSPTAAIGFEYDP 184
>UNIPROTKB|P19387 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0015630 "microtubule
cytoskeleton" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 Reactome:REACT_116125
GO:GO:0016032 GO:GO:0015630 GO:GO:0003677 Reactome:REACT_1675
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
EMBL:AC004382 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 GO:GO:0003899 KO:K03011 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
CTD:5432 HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC
EMBL:J05448 EMBL:AF008443 EMBL:AJ224143 EMBL:AJ224144 EMBL:BC000409
EMBL:BC003159 EMBL:BC028157 IPI:IPI00018288 PIR:A36264
RefSeq:NP_116558.1 UniGene:Hs.79402 ProteinModelPortal:P19387
SMR:P19387 DIP:DIP-32911N IntAct:P19387 MINT:MINT-270053
STRING:P19387 PhosphoSite:P19387 DMDM:3915850 PaxDb:P19387
PeptideAtlas:P19387 PRIDE:P19387 DNASU:5432 Ensembl:ENST00000219252
GeneID:5432 KEGG:hsa:5432 UCSC:uc002elt.1 GeneCards:GC16P057496
HGNC:HGNC:9189 HPA:HPA040919 HPA:HPA041826 MIM:180663
neXtProt:NX_P19387 PharmGKB:PA33509 InParanoid:P19387
PhylomeDB:P19387 GenomeRNAi:5432 NextBio:21017 ArrayExpress:P19387
Bgee:P19387 CleanEx:HS_POLR2C Genevestigator:P19387
GermOnline:ENSG00000102978 Uniprot:P19387
Length = 275
Score = 178 (67.7 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 47/141 (33%), Positives = 80/141 (56%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E+ ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKP-DSNPS 206
+ N +P+ ++ D++P+
Sbjct: 121 -ISNSPRVIPVTSRNRDNDPN 140
Score = 110 (43.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S+ PR S ++D P N DI I +L GQE+ L A+A KG GK HAKW+
Sbjct: 122 SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query: 266 PVA 268
P A
Sbjct: 178 PTA 180
Score = 68 (29.0 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F + +ES G+L PET+ A+ L+ K + T+LS
Sbjct: 227 ERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLS 264
>MGI|MGI:109299 [details] [associations]
symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide
C" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 MGI:MGI:109299 GO:GO:0005737 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 HOVERGEN:HBG000897 EMBL:D83999 IPI:IPI00129026
PIR:JC6181 UniGene:Mm.292492 ProteinModelPortal:P97760 SMR:P97760
IntAct:P97760 STRING:P97760 PhosphoSite:P97760 PaxDb:P97760
PRIDE:P97760 CleanEx:MM_POLR2C Genevestigator:P97760 Uniprot:P97760
Length = 275
Score = 177 (67.4 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 46/141 (32%), Positives = 80/141 (56%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKP-DSNPS 206
+ N +P+ ++ D++P+
Sbjct: 121 -ISNSPRVIPVTSRNRDNDPN 140
Score = 96 (38.9 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S+ PR S ++D P N DI I +L GQE+ L A+ K GK HAKW+
Sbjct: 122 SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQELRLRAYVKKRSGKEHAKWN 177
Query: 266 PVA 268
P A
Sbjct: 178 PTA 180
Score = 66 (28.3 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F + +ES G+L PET+ A+ L+ K + T+LS
Sbjct: 227 ERFYYNVESCGSLRPETIGLSALSGLKKKLSDLQTQLS 264
>UNIPROTKB|E1BV97 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0015630
"microtubule cytoskeleton" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AADN02065759
IPI:IPI00579063 RefSeq:XP_414001.1 UniGene:Gga.11991 PRIDE:E1BV97
Ensembl:ENSGALT00000001768 GeneID:415635 KEGG:gga:415635
NextBio:20819207 Uniprot:E1BV97
Length = 275
Score = 175 (66.7 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 47/141 (33%), Positives = 80/141 (56%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSEND-TSNE---KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D T +E + ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKP-DSNPS 206
+ N +P+ ++ D++P+
Sbjct: 121 -ISNNPRVIPVTSRSRDNDPN 140
Score = 114 (45.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S+ PR S S+D P N DI I +L GQE++L A+A KG GK HAKW+
Sbjct: 122 SNNPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQELKLRAYAKKGFGKEHAKWN 177
Query: 266 PVA 268
P A
Sbjct: 178 PTA 180
Score = 68 (29.0 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F + +ES G+L PET+ A+ L+ K + T+LS
Sbjct: 227 ERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLS 264
>RGD|1306935 [details] [associations]
symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide C"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 RGD:1306935 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
KO:K03011 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 HOGENOM:HOG000230844 CTD:5432
GeneTree:ENSGT00640000091532 HOVERGEN:HBG000897 OMA:NQPTVKI
EMBL:CH474006 EMBL:BC089905 IPI:IPI00476352 RefSeq:NP_001012491.1
UniGene:Rn.139399 SMR:Q5EB90 STRING:Q5EB90
Ensembl:ENSRNOT00000021639 GeneID:361365 KEGG:rno:361365
UCSC:RGD:1306935 NextBio:676047 Genevestigator:Q5EB90
Uniprot:Q5EB90
Length = 275
Score = 175 (66.7 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 46/141 (32%), Positives = 80/141 (56%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKP-DSNPS 206
+ N +P+ ++ D++P+
Sbjct: 121 -ISNSPRVIPVTSRNRDNDPN 140
Score = 110 (43.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S+ PR S ++D P N DI I +L GQE+ L A+A KG GK HAKW+
Sbjct: 122 SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query: 266 PVA 268
P A
Sbjct: 178 PTA 180
Score = 68 (29.0 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F + +ES G+L PET+ A+ L+ K + T+LS
Sbjct: 227 ERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLS 264
>UNIPROTKB|Q3T0Q3 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 EMBL:BT030680 EMBL:BC102301 IPI:IPI00690694
RefSeq:NP_001029384.1 UniGene:Bt.49139 ProteinModelPortal:Q3T0Q3
STRING:Q3T0Q3 PRIDE:Q3T0Q3 Ensembl:ENSBTAT00000002420 GeneID:504452
KEGG:bta:504452 CTD:5432 GeneTree:ENSGT00640000091532
HOVERGEN:HBG000897 InParanoid:Q3T0Q3 OMA:NQPTVKI OrthoDB:EOG437RFC
NextBio:20866665 Uniprot:Q3T0Q3
Length = 275
Score = 173 (66.0 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 46/141 (32%), Positives = 79/141 (56%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKP-DSNPS 206
+ N +P+ ++ D++P+
Sbjct: 121 -ISNSPRVIPVTSRNRDNDPN 140
Score = 110 (43.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S+ PR S ++D P N DI I +L GQE+ L A+A KG GK HAKW+
Sbjct: 122 SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query: 266 PVA 268
P A
Sbjct: 178 PTA 180
Score = 68 (29.0 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F + +ES G+L PET+ A+ L+ K + T+LS
Sbjct: 227 ERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLS 264
>UNIPROTKB|E2RQ42 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015630 "microtubule cytoskeleton"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 GO:GO:0015630
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AAEX03001573
EMBL:AAEX03001572 RefSeq:XP_535283.2 ProteinModelPortal:E2RQ42
PRIDE:E2RQ42 Ensembl:ENSCAFT00000013863 GeneID:478109
KEGG:cfa:478109 NextBio:20853480 Uniprot:E2RQ42
Length = 275
Score = 173 (66.0 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 46/141 (32%), Positives = 79/141 (56%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKP-DSNPS 206
+ N +P+ ++ D++P+
Sbjct: 121 -ISNSPRVIPVTSRNRDNDPN 140
Score = 110 (43.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S+ PR S ++D P N DI I +L GQE+ L A+A KG GK HAKW+
Sbjct: 122 SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query: 266 PVA 268
P A
Sbjct: 178 PTA 180
Score = 68 (29.0 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F + +ES G+L PET+ A+ L+ K + T+LS
Sbjct: 227 ERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLS 264
>ZFIN|ZDB-GENE-030131-6609 [details] [associations]
symbol:polr2c "polymerase (RNA) II (DNA directed)
polypeptide C" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 ZFIN:ZDB-GENE-030131-6609 GO:GO:0003677 GO:GO:0006351
EMBL:AL929309 GO:GO:0003899 KO:K03011 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 CTD:5432 GeneTree:ENSGT00640000091532
HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC EMBL:BC046047
IPI:IPI00484221 RefSeq:NP_001161428.1 UniGene:Dr.81878
STRING:Q7ZV11 Ensembl:ENSDART00000043812 GeneID:334669
KEGG:dre:334669 InParanoid:Q7ZV11 NextBio:20810502 Uniprot:Q7ZV11
Length = 275
Score = 161 (61.7 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 44/141 (31%), Positives = 79/141 (56%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ L+ ++++F + D A+AN+ RR+ ++E+PT+AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ IVD + D + ++ L V C R V + +L
Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKP-DSNPS 206
L N +P+ ++ D++P+
Sbjct: 121 -LSNNPRVIPVTSRSRDNDPN 140
Score = 111 (44.1 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S+ PR S S+D P N DI + +L GQE+ L A+A KG GK HAKW+
Sbjct: 122 SNNPRVIPVTSRSRDNDP----NDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query: 266 PVA 268
P A
Sbjct: 178 PTA 180
Score = 72 (30.4 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F + +ES G+L PET+ A+ +L+ K + T+LS
Sbjct: 227 ERFYYNVESCGSLRPETIVMSALAMLKKKLSDLQTQLS 264
>UNIPROTKB|D4A8A8 [details] [associations]
symbol:Polr2c "Protein Polr2c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 RGD:1306935 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 OrthoDB:EOG437RFC IPI:IPI00779676
Ensembl:ENSRNOT00000061255 ArrayExpress:D4A8A8 Uniprot:D4A8A8
Length = 330
Score = 175 (66.7 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 46/141 (32%), Positives = 80/141 (56%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKP-DSNPS 206
+ N +P+ ++ D++P+
Sbjct: 121 -ISNSPRVIPVTSRNRDNDPN 140
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 382 352 0.00078 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 622 (66 KB)
Total size of DFA: 255 KB (2136 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.77u 0.09s 28.86t Elapsed: 00:00:01
Total cpu time: 28.77u 0.09s 28.86t Elapsed: 00:00:01
Start: Thu May 9 18:25:03 2013 End: Thu May 9 18:25:04 2013