BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016812
(382 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225461965|ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Vitis vinifera]
gi|296089944|emb|CBI39763.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/366 (79%), Positives = 328/366 (89%), Gaps = 4/366 (1%)
Query: 20 DLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRV 78
D+PDVP+ +LPPHIE QRTRV CN DAP HTENV YSGAY+SMGVDNSL++D FCNNFRV
Sbjct: 8 DMPDVPKGQLPPHIELQRTRVLCNFDAPTHTENVQYSGAYSSMGVDNSLRMDQFCNNFRV 67
Query: 79 EVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
EVIRL++DDMEFD+IGID +IANAFRRILIAELPTMAIEKVLIANNTS++QDEVLAHRLG
Sbjct: 68 EVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHRLG 127
Query: 139 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
LIPI DPRLF+ +SENDT NEKNTIVF LHV CERGGPRLTVK+NELKWLP+GSE PL
Sbjct: 128 LIPINADPRLFDDLSENDTPNEKNTIVFNLHVRCERGGPRLTVKSNELKWLPHGSEFPLA 187
Query: 199 TK-PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKG 256
T+ S+ +SKP+TYTSFS SQD LPEFS+ I P DI IA+LGPGQEIELEAHAVKG
Sbjct: 188 TENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIELEAHAVKG 247
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
+GKTHAKWSPVATAWYRMLPE+VLL+++EDE AE+LVK CPVNVFDIEDI GKK+ATVA
Sbjct: 248 MGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCPVNVFDIEDIAKGKKKATVA 307
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
+PRACTLCREC+R G++W+K V+IRRVK+HFIFTIESTGAL PE LF EAVK+LEDKCER
Sbjct: 308 RPRACTLCRECIR-GDDWDKHVAIRRVKNHFIFTIESTGALPPEVLFNEAVKVLEDKCER 366
Query: 377 VITELS 382
VITELS
Sbjct: 367 VITELS 372
>gi|255563568|ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
gi|223538024|gb|EEF39637.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
Length = 374
Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust.
Identities = 287/369 (77%), Positives = 322/369 (87%), Gaps = 10/369 (2%)
Query: 16 FSIWDLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCN 74
FSIWDLPDVP +LPPH++ QRTRV C DAPIHT+N++YSGAYAS+GVDNSLQLD F +
Sbjct: 14 FSIWDLPDVPMGQLPPHLQLQRTRVVCKSDAPIHTDNIVYSGAYASIGVDNSLQLDCFRD 73
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
NF+VEVI+LTKDDMEFD+IGIDAAIANAFRRILI+ELPTMAIEKVLIANNTS+IQDEVLA
Sbjct: 74 NFKVEVIQLTKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEVLA 133
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HRLGLIPI DPRLFEY+S NDT NEKNTIVFKLH C+RG PR TV + ELKWLP GS+
Sbjct: 134 HRLGLIPINADPRLFEYLSANDTPNEKNTIVFKLHASCKRGEPRRTVYSEELKWLPGGSQ 193
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHA 253
L E++ SKP TYTSF+ QD +P+ P+ P D I +A+LGPGQEIELEAHA
Sbjct: 194 LLKESE---KADSKPSTYTSFTDKQDFIPK----PVSPSEDKIIVAKLGPGQEIELEAHA 246
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
VKG+GKTHAKWSPVATAWYRMLPE+VLLED+EDE AE+L K CPVNVFDIEDIG+GKKRA
Sbjct: 247 VKGLGKTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEELTKKCPVNVFDIEDIGNGKKRA 306
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
TVA+PRACTLCREC+R G EW+KRVS+RRVKDHFIFTIESTGAL PE LFTEAVK+LEDK
Sbjct: 307 TVARPRACTLCRECIR-GGEWDKRVSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLEDK 365
Query: 374 CERVITELS 382
CERVITELS
Sbjct: 366 CERVITELS 374
>gi|363807500|ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
gi|255637183|gb|ACU18922.1| unknown [Glycine max]
Length = 388
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/368 (75%), Positives = 311/368 (84%), Gaps = 5/368 (1%)
Query: 18 IWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFR 77
I L +VP KLPPH+E +TRV CN DAP+HT+ V YSGAYA +GVDNS++LD FC NF+
Sbjct: 23 ILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAILGVDNSVRLDSFCENFK 82
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VEV RLT D+EFD+IGID AIANAFRRILIAE+PTMAIE+V IANNTSV+QDEVL+HRL
Sbjct: 83 VEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRL 142
Query: 138 GLIPIIVDPRLFEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
GLIPI DPRLFEY + D NEKNTIVFKLHV C+ G PR+TVK+++LKWLPNGSELP
Sbjct: 143 GLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELP 202
Query: 197 LE-TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAV 254
E KP N SKP+T+TSF+ SQD LPEFSNN I DI +A+LGPGQEIELEAHAV
Sbjct: 203 CEGVKP--NAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAV 260
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KGIGKTHAKWSPVATAWYRMLPE+VLLE VEDE AE+L CPVNVFDIEDIG GK+RA
Sbjct: 261 KGIGKTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELKNKCPVNVFDIEDIGKGKRRAK 320
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
VA+PR CTLCREC+R G+EWE RVS+RRVK+HFIFTIESTGAL PE LFTEAVKILEDKC
Sbjct: 321 VARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKC 380
Query: 375 ERVITELS 382
ERVITELS
Sbjct: 381 ERVITELS 388
>gi|356527169|ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Glycine max]
Length = 393
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/368 (75%), Positives = 310/368 (84%), Gaps = 5/368 (1%)
Query: 18 IWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFR 77
I L +VP KLPPH+E +TRV CN DAP+HT+ V YSGAYA MGVDNS++LD FC NF+
Sbjct: 28 ILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVDNSVRLDSFCENFK 87
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VEV RLT D+EFD+IGID AIANAFRRILIAE+PTMAIE+V IANNTSV+QDEVL+HRL
Sbjct: 88 VEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRL 147
Query: 138 GLIPIIVDPRLFEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
GLIPI DPRLFEY + D NEKNTIVFKLHV C+ G PR+TVK+++LKWLPNGSELP
Sbjct: 148 GLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELP 207
Query: 197 LE-TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAV 254
E KP N SKP+T+TSF+ SQD LPEFSNN I DI +A+LGPGQEIELEAHAV
Sbjct: 208 CEDVKP--NAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAV 265
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KG GKTHAKWSPVAT WYRMLPE+VLL+DVEDE AE+L CPVNVFDIEDIG GK+RA
Sbjct: 266 KGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKNKCPVNVFDIEDIGKGKRRAK 325
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
VA+PR CTLCREC+R G+EWE RVS+RRVK+HFIFTIESTGAL PE LFTEAVKILEDKC
Sbjct: 326 VARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKC 385
Query: 375 ERVITELS 382
ERVITELS
Sbjct: 386 ERVITELS 393
>gi|224061238|ref|XP_002300385.1| predicted protein [Populus trichocarpa]
gi|222847643|gb|EEE85190.1| predicted protein [Populus trichocarpa]
Length = 390
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 268/369 (72%), Positives = 303/369 (82%), Gaps = 4/369 (1%)
Query: 15 SFSIWDLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFC 73
FS W+L DV + +LPPHI Q TRV C DAP +TE + YSG+YASMGVDNSL+LD F
Sbjct: 25 GFSYWNLKDVERGQLPPHIRKQGTRVYCKPDAPTNTETLQYSGSYASMGVDNSLRLDSFR 84
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
NFR++VI L KD MEFD+IGIDAA+ANAFRRILI+E+PTMAIEKV IANNTSVIQDEVL
Sbjct: 85 ENFRIKVIALDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVIQDEVL 144
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
AHRLGLIPI VDPRLFEY+S NDT NEKNTIV KLH C RG PR +V + ELKWLPNGS
Sbjct: 145 AHRLGLIPIKVDPRLFEYLSANDTPNEKNTIVLKLHARCNRGQPRCSVYSQELKWLPNGS 204
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
E E++ P SKP TYTSFS QD LPEF+ NPI + DI +A+LGPGQEIELEAHA
Sbjct: 205 EFAKESE---KPDSKPSTYTSFSCGQDSLPEFAGNPISTVEDIILAKLGPGQEIELEAHA 261
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
VKG+GKTHAKWSPV TAWYRM PE+VLLE+++ EDAE+L++ CP VFDIED G+ KK+A
Sbjct: 262 VKGMGKTHAKWSPVGTAWYRMFPEVVLLENIKGEDAEELIRKCPSGVFDIEDTGNAKKKA 321
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
VA RACTLCREC+R EEWEKRV++ RVKDHFIFTIESTGAL PE LFTEAVKILE K
Sbjct: 322 IVADSRACTLCRECIRGDEEWEKRVALHRVKDHFIFTIESTGALPPEVLFTEAVKILEAK 381
Query: 374 CERVITELS 382
CERVITELS
Sbjct: 382 CERVITELS 390
>gi|15219773|ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|514324|gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|2462755|gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|24899667|gb|AAN65048.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|1586550|prf||2204246B RNA polymerase
Length = 385
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 266/376 (70%), Positives = 314/376 (83%), Gaps = 4/376 (1%)
Query: 8 EKKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSL 67
E+K+EA++F+I+DLPDVP LPPH+E QRTRV C D+ IH + +SGAY+SMGVDNS+
Sbjct: 13 EEKREAKNFNIFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSV 72
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L++F +F+V+VI LT+ DM FD+IG+ A IANAFRRIL+AELP+MAIEKV +ANNTSV
Sbjct: 73 RLENFSEDFKVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSV 132
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
IQDEVLAHRLGLIPI DPRLFEY+SEND NEKNTIVFKLHV C +G PR V T+ELK
Sbjct: 133 IQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELK 192
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQE 246
WLPNGSEL K ++ P+TYTSF+ SQD PEF+ NPIRP L DI IA+LGPGQE
Sbjct: 193 WLPNGSEL---IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQE 249
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPVATAWYRMLPE+VLL++ E + AE+LVK CP VFDIED+
Sbjct: 250 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDM 309
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
G G+KRATVA+PR C+LCREC+R G EWE +V +RRVK+HFIFTIESTG+ PE LF EA
Sbjct: 310 GQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEA 369
Query: 367 VKILEDKCERVITELS 382
VKILEDKCERVI+ELS
Sbjct: 370 VKILEDKCERVISELS 385
>gi|297840495|ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
Length = 385
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 265/376 (70%), Positives = 312/376 (82%), Gaps = 4/376 (1%)
Query: 8 EKKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSL 67
E+K+ A++F+I+DLPDVP LPPH+E QRTR C DAPIH +V+YSGAYASMGVDNS+
Sbjct: 13 EEKQFAKNFNIFDLPDVPTGLPPHLELQRTRAVCKNDAPIHPTSVLYSGAYASMGVDNSV 72
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L++F +F+V+VI LT+ M FD+IG+ A IANAFRRIL+AELP+MAIEKV +ANNTSV
Sbjct: 73 RLENFSEDFKVDVISLTETYMVFDMIGVPAGIANAFRRILLAELPSMAIEKVFVANNTSV 132
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
IQDEVLAHRLGLIPI DPRLFEY+SEND NEKNTIVFKLHV C +G PR V T+ELK
Sbjct: 133 IQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCPKGDPRRKVLTSELK 192
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQE 246
WLPNGSEL K ++KP+TYTSFS SQD P F+ NPI P DI IA+LGPGQE
Sbjct: 193 WLPNGSEL---VKESGGLTTKPKTYTSFSHSQDSFPGFAKNPITPSFQDILIAKLGPGQE 249
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPVATAWYRMLPE++LL++ E + AE+LVK CP VFDIED+
Sbjct: 250 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEVILLKEFEGKHAEELVKVCPKKVFDIEDM 309
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
G G+KRATVA+PR C+LCREC+R G EW K+V +RRVK+HFIFTIESTG+ P+ LF EA
Sbjct: 310 GQGRKRATVARPRDCSLCRECIREGVEWAKQVDLRRVKNHFIFTIESTGSQPPDVLFNEA 369
Query: 367 VKILEDKCERVITELS 382
VKILEDKCERVI+ELS
Sbjct: 370 VKILEDKCERVISELS 385
>gi|449461051|ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
gi|449522768|ref|XP_004168398.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
Length = 391
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/385 (71%), Positives = 322/385 (83%), Gaps = 7/385 (1%)
Query: 1 MAEREETEKKKEAESFS-IWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYA 59
M+E E ++ + E I +LPDVP KLPPH+E QRTRV+C DAPIHT+ + YSGA+A
Sbjct: 11 MSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAFA 70
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
SMG DNSL+LD+F NNF++EVI L +DD+EFD+IGID A+ANAFRRILI+E+PTMAIEKV
Sbjct: 71 SMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILISEVPTMAIEKV 130
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL 179
L ANNTS++QDEVLAHRLGL+PI VDPRLF+Y S+ D NE NTIVF+LH CERG PRL
Sbjct: 131 LFANNTSIVQDEVLAHRLGLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRL 189
Query: 180 TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPM-LDIT 237
TV + L WLPNGSE PL + S +SKP+TYTSFS SQ+ L EFSNNPI P DI
Sbjct: 190 TVTSKALTWLPNGSEFPLVSD-KSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDII 248
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP 297
+ARLGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPE+VL+E++EDE AE+L K CP
Sbjct: 249 LARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELAEELEKKCP 308
Query: 298 VNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
VNVFDIEDI +GKKRATVA+PR CTLCREC+R G+ WEKRV++RRVKDHFIF IESTGAL
Sbjct: 309 VNVFDIEDI-AGKKRATVARPRDCTLCRECIR-GDAWEKRVALRRVKDHFIFKIESTGAL 366
Query: 358 SPETLFTEAVKILEDKCERVITELS 382
PE LFTEAVKILEDKCER+I ELS
Sbjct: 367 PPEVLFTEAVKILEDKCERLIAELS 391
>gi|297837401|ref|XP_002886582.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
gi|297332423|gb|EFH62841.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
Length = 376
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/374 (68%), Positives = 308/374 (82%), Gaps = 6/374 (1%)
Query: 9 KKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSL 67
+K+ A++F+I DLPDVP LPPH++ Q+T V N +AP+HT + +YSG+Y +S+GVD+S+
Sbjct: 6 EKQFAKNFNIDDLPDVPTGLPPHLKAQQTGVVSNNNAPLHTASAIYSGSYVSSLGVDDSV 65
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L +F NF+V+VI LTK DMEFD+IGIDAA ANAFRRILIAELP+MAIEKVLIA NTSV
Sbjct: 66 KLGNFYENFKVDVISLTKTDMEFDMIGIDAAFANAFRRILIAELPSMAIEKVLIAYNTSV 125
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
I DEVLAHR+GLIPI DPRLFEY+SEND +NEKNTIVFKLHV C + PRL V T++LK
Sbjct: 126 IIDEVLAHRMGLIPIAADPRLFEYLSENDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLK 185
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
WLPNGSE E+ +SKP+TYTSFS SQD LPEF+NNPI P LDI IA+L PGQE
Sbjct: 186 WLPNGSEFLRES---GGSTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQE 242
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPV TAWYRM PE+VL +VEDE AE+LVK CP NVFDIED+
Sbjct: 243 IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVKVCPQNVFDIEDM 302
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
G G+KRATVAQPR CTLC+EC+R ++ +RV + V++HFIF IESTG+L+P+ LFTEA
Sbjct: 303 GKGRKRATVAQPRKCTLCQECVR-DDDLVERVDLGSVRNHFIFNIESTGSLTPDVLFTEA 361
Query: 367 VKILEDKCERVITE 380
VKILE KCE VI +
Sbjct: 362 VKILEAKCETVIAD 375
>gi|357460223|ref|XP_003600393.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
gi|355489441|gb|AES70644.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
Length = 399
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/376 (67%), Positives = 305/376 (81%), Gaps = 15/376 (3%)
Query: 18 IWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFR 77
I +L DVP LP H+E Q+TRV CNLDAP HT+ + YSGAYA++GVDNS++LD+F NF+
Sbjct: 28 IMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFK 87
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VEV R+T ++MEFD+IGID A+ANAFRRILIAE+PTMAIE+V IANNTS++QDEVL+HRL
Sbjct: 88 VEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRL 147
Query: 138 GLIPIIVDPRLFEYMSE-NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
GLIPI DP+LFEY + +NEKNTIVFK HV CE+G PRLTVK++ LKWLPNGSEL
Sbjct: 148 GLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELI 207
Query: 197 LE-TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
E TK ++P+ P+T+T+F +Q LP+FS +P LD+ +A+LGPGQEIELEAHAVK
Sbjct: 208 AEGTKSAADPA--PKTFTTF--NQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVK 263
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
GIGKTHAKWSPVATAWYRMLPE+VL +DV+DE AE+LV CP VFDIEDIG G+K+A V
Sbjct: 264 GIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVV 323
Query: 316 AQPRACTLCRECLRCGE---------EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
RACTLCREC+R + +W RVS+RRVKDHFIFTIESTGA+ P+ LFTEA
Sbjct: 324 KNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEA 383
Query: 367 VKILEDKCERVITELS 382
VKILEDKCERVITELS
Sbjct: 384 VKILEDKCERVITELS 399
>gi|242064360|ref|XP_002453469.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
gi|241933300|gb|EES06445.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
Length = 370
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/375 (65%), Positives = 300/375 (80%), Gaps = 9/375 (2%)
Query: 10 KKEAESFSIWDLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQ 68
KK +S + + P+ + KLP ++E QRTRV CN DAPIHT+ YSG +A+MGVDNS+
Sbjct: 3 KKGTKSKEVDNAPNQQENKLPDYLEVQRTRVVCNADAPIHTQGYQYSGTFAAMGVDNSVS 62
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
++ FC NF++E+ RLT+DDMEFD+IGIDA+IANAFRRILIAE+PTMAIEK+ + +NTSVI
Sbjct: 63 VEKFCKNFKIEINRLTEDDMEFDMIGIDASIANAFRRILIAEVPTMAIEKIFMVDNTSVI 122
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
DEVL+HRLGLIP+ DPRLF+Y+SEND NE+NT+V+KLHV C +G R+TVK++EL+W
Sbjct: 123 ADEVLSHRLGLIPLRADPRLFDYISENDVPNERNTVVYKLHVSCPKGSQRITVKSSELEW 182
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEI 247
LP GS+L + S K +T+TSFS SQ E P+ DITIARLGPGQ I
Sbjct: 183 LPEGSQLSMAAPAQS--GDKQKTFTSFSQSQK---EILEEPLGVKFKDITIARLGPGQAI 237
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
ELEAHAVKG+GK HAKWSPVATAWYRMLPE+V+L+D+E +DAE+LVK CPVNVFDIED+G
Sbjct: 238 ELEAHAVKGVGKVHAKWSPVATAWYRMLPEVVILKDIEGDDAEELVKKCPVNVFDIEDLG 297
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+G KRA VA+PRACTLCREC+ +V +RRV+DHFIFTIESTGAL PE LFTEAV
Sbjct: 298 NGGKRAVVAKPRACTLCRECVMGPN--GNQVELRRVRDHFIFTIESTGALPPEVLFTEAV 355
Query: 368 KILEDKCERVITELS 382
KILE+KCERVI+ELS
Sbjct: 356 KILEEKCERVISELS 370
>gi|115452445|ref|NP_001049823.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|108707636|gb|ABF95431.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113548294|dbj|BAF11737.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|222624742|gb|EEE58874.1| hypothetical protein OsJ_10475 [Oryza sativa Japonica Group]
Length = 379
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/363 (67%), Positives = 295/363 (81%), Gaps = 13/363 (3%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
KLP H+E QRTRV C DAP++TE Y+GA+A+MG+DNS+ D FC NF+V V RLT+D
Sbjct: 23 KLPEHLEVQRTRVVCKGDAPVNTEGFQYAGAFAAMGIDNSVSADKFCKNFKVVVNRLTED 82
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
DMEFD+IGIDA++ANAFRRILIAE+PTMAIEKVL+A+NTSVI DEVL+HRLGLIP+ DP
Sbjct: 83 DMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHRLGLIPLDADP 142
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
RLFEY+SEND E+NTIV+KLHV C++G PRLTVK+ +L+WLP GS+LPL + S
Sbjct: 143 RLFEYISENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGSQLPLASPAQSG-- 200
Query: 207 SKPRTYTSFSSSQ-DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
K +TYTSFS SQ D+L + + DITIARLGPGQ IELE HAVKGIGK HAKWS
Sbjct: 201 DKQKTYTSFSQSQKDILEKPLGVKFK---DITIARLGPGQAIELEVHAVKGIGKVHAKWS 257
Query: 266 PVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PVATAWYRMLPE+VL E+++D DAE LV CPVNVFDIED+G+G+KRA VA+PRACTLCR
Sbjct: 258 PVATAWYRMLPEVVLREEIKDADAEMLVAKCPVNVFDIEDLGNGEKRAVVARPRACTLCR 317
Query: 326 ECLRCGEEWE------KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVIT 379
+C+ G E ++V +RRV+DHFIFTIESTGAL PE LFTEAV+ILE+KCERVI+
Sbjct: 318 QCV-MGPTGEVMGPTVEQVELRRVRDHFIFTIESTGALPPEMLFTEAVRILEEKCERVIS 376
Query: 380 ELS 382
ELS
Sbjct: 377 ELS 379
>gi|15219820|ref|NP_176282.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|30696474|ref|NP_849833.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|12323800|gb|AAG51868.1|AC079675_3 RNA polymerase subunit; 10595-12672 [Arabidopsis thaliana]
gi|110741863|dbj|BAE98873.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|332195618|gb|AEE33739.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195619|gb|AEE33740.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 252/371 (67%), Positives = 301/371 (81%), Gaps = 6/371 (1%)
Query: 9 KKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSL 67
+K+ A++F+I DLPDVP LPPH++ Q+TRV +AP HT + +YSG Y +S D+++
Sbjct: 6 EKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNV 65
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L +F +NF+V+V+ LTK DMEFD+IGIDAA ANAFRRILIAE+P+MAIEKVLIA NTSV
Sbjct: 66 KLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSV 125
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
I DEVLAHR+GLIPI DPRLFEY+SE+D +NEKNTIVFKLHV C + PRL V T++LK
Sbjct: 126 IIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLK 185
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
WLPNGSEL E++ N +SKP+TYTSFS SQD LPEF+NNPI P LDI IA+L PGQE
Sbjct: 186 WLPNGSELLRESE---NKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQE 242
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPV TAWYRM PE+VL +VEDE AE+LV CP NVFDIED+
Sbjct: 243 IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDM 302
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
G GKKRATVAQPR CTLC+EC+R ++ V + VK+HFIF IESTG+L PE LFTEA
Sbjct: 303 GKGKKRATVAQPRKCTLCKECVR-DDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEA 361
Query: 367 VKILEDKCERV 377
VKILE KCE +
Sbjct: 362 VKILEAKCEAI 372
>gi|514322|gb|AAB00528.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|1586549|prf||2204246A RNA polymerase
Length = 375
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/371 (67%), Positives = 300/371 (80%), Gaps = 6/371 (1%)
Query: 9 KKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSL 67
+K+ A++F+I DLPDVP LPPH++ Q+TRV +AP HT + +YSG Y +S D+++
Sbjct: 6 EKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNV 65
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L +F +NF+V+V+ LTK DMEFD+IGIDAA ANAFRRILIAE+P+MAIEKVLIA NTSV
Sbjct: 66 KLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSV 125
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
I DEVLAHR+GLIPI DPRLFEY+SE+D +NEKN IVFKLHV C + PRL V T++LK
Sbjct: 126 IIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNNIVFKLHVKCPKNRPRLKVLTSDLK 185
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
WLPNGSEL E++ N +SKP+TYTSFS SQD LPEF+NNPI P LDI IA+L PGQE
Sbjct: 186 WLPNGSELLRESE---NKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQE 242
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPV TAWYRM PE+VL +VEDE AE+LV CP NVFDIED+
Sbjct: 243 IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDM 302
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
G GKKRATVAQPR CTLC+EC+R ++ V + VK+HFIF IESTG+L PE LFTEA
Sbjct: 303 GKGKKRATVAQPRKCTLCKECVR-DDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEA 361
Query: 367 VKILEDKCERV 377
VKILE KCE +
Sbjct: 362 VKILEAKCEAI 372
>gi|21592304|gb|AAM64255.1| RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 250/371 (67%), Positives = 299/371 (80%), Gaps = 6/371 (1%)
Query: 9 KKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSL 67
+K+ A++F+I DLPDVP LPPH++ Q+TRV +AP HT + +YSG Y +S D+++
Sbjct: 6 EKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNV 65
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L +F +NF+V+V+ LTK DMEFD+IGIDAA ANAFRRILIAE+P+MAIEKV IA NTSV
Sbjct: 66 KLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVFIAYNTSV 125
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
I DEVLAHR+GLIPI DPRLFEY+SE+D +NEKNTIVFKLHV C + PRL V T++LK
Sbjct: 126 IIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLK 185
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
WLPNGSEL E++ N +SK +TYTSFS SQD LPEF+NNPI P LDI IA+L PGQE
Sbjct: 186 WLPNGSELLRESE---NKTSKLKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQE 242
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
IELEAHAVKGIGKTHAKWSPV TAWYRM PE+VL +VEDE AE+LV CP NVFDIED+
Sbjct: 243 IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDM 302
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
G GKKRATVAQPR CTLC+EC+R ++ V + VK+HFIF IESTG+L PE LFTEA
Sbjct: 303 GKGKKRATVAQPRKCTLCKECVR-DDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEA 361
Query: 367 VKILEDKCERV 377
VKILE KCE +
Sbjct: 362 VKILEAKCEAI 372
>gi|357121301|ref|XP_003562359.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
rpac1-like [Brachypodium distachyon]
Length = 360
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/368 (65%), Positives = 296/368 (80%), Gaps = 14/368 (3%)
Query: 20 DLPDVP----QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNN 75
D+ DVP KLP H+E QRTRV C DAP HT+ YSGA+A+MGVDNS+ ++ FCN+
Sbjct: 2 DMDDVPTQQRNKLPDHLERQRTRVTCKADAPTHTQGFQYSGAFAAMGVDNSVSVEKFCNS 61
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
F++++ RLT+DDMEFD+IG+DA+IANAFRRILIAE+PTMAIEKV + +NTSVI DEVL+H
Sbjct: 62 FKIKINRLTEDDMEFDMIGVDASIANAFRRILIAEVPTMAIEKVFMVDNTSVIADEVLSH 121
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ DPRLF+++S +D NE+NTIV+KLHV CE+G RLTVK+ +L+WLP GS+L
Sbjct: 122 RLGLIPLDADPRLFDHIS-DDVPNERNTIVYKLHVSCEKGSQRLTVKSGQLEWLPEGSQL 180
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR-PMLDITIARLGPGQEIELEAHAV 254
+ + + K +TYTSF SQ S I DITIARLGPGQ IELEAHAV
Sbjct: 181 LMAS---AAQGEKQKTYTSFGQSQK---NISGRSIGVKYKDITIARLGPGQAIELEAHAV 234
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KG+GK HAKWSPVATAWYRMLPE+VLL++++D +AE+LVK CPVNVFDIED+G+G KRA
Sbjct: 235 KGVGKVHAKWSPVATAWYRMLPEVVLLKEIKDGEAEELVKKCPVNVFDIEDLGNGAKRAV 294
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
VA+PRACTLCREC+ G E+ V +RRV+DHFIFTIESTGAL PE LFTEAVKILE+KC
Sbjct: 295 VARPRACTLCRECV-MGPTGEQ-VELRRVRDHFIFTIESTGALPPEVLFTEAVKILEEKC 352
Query: 375 ERVITELS 382
ERVI+ELS
Sbjct: 353 ERVISELS 360
>gi|212276110|ref|NP_001130839.1| uncharacterized protein LOC100191943 [Zea mays]
gi|194690246|gb|ACF79207.1| unknown [Zea mays]
gi|413926820|gb|AFW66752.1| hypothetical protein ZEAMMB73_992882 [Zea mays]
Length = 372
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/365 (65%), Positives = 287/365 (78%), Gaps = 12/365 (3%)
Query: 23 DVPQ----KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRV 78
DVP KLP ++E QRTRV CN DAPIHT+ YSGA+A+MG+DNS+ +D FC NF++
Sbjct: 15 DVPNEQENKLPDYLELQRTRVVCNADAPIHTQGFQYSGAFAAMGIDNSVSVDKFCKNFKI 74
Query: 79 EVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
E+ RLT+D MEFD+IGIDA+IANAFRRILI+E+PTMAIEKV +A+N SVI DEVL+HRLG
Sbjct: 75 EINRLTEDYMEFDMIGIDASIANAFRRILISEVPTMAIEKVFMADNNSVIADEVLSHRLG 134
Query: 139 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
LIP+ DPRLFEY+SEND NE+NTIV+KLHV C + R+TVK++EL+WLP GS+L +
Sbjct: 135 LIPLDADPRLFEYISENDVPNERNTIVYKLHVSCPKNSQRITVKSSELEWLPEGSQLSMS 194
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR-PMLDITIARLGPGQEIELEAHAVKGI 257
S K +T+TSFS SQ E P+ DITIARLGPGQ IELEAHAVKG
Sbjct: 195 APAQS--GDKQKTFTSFSQSQK---EILEKPLGVKYKDITIARLGPGQAIELEAHAVKGT 249
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
G HAKWSPVATAWYRMLPE+V+L++VE AE+LV C VNVFDIED+ +G KRA VA+
Sbjct: 250 GNVHAKWSPVATAWYRMLPEVVILKEVEGPQAEELVNKCRVNVFDIEDLANGGKRAVVAR 309
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
PRACTLCREC+ EK+V +RRV+DHFIFTIESTG++ PE LFTEAVKILE+KC RV
Sbjct: 310 PRACTLCRECVMGPN--EKQVELRRVRDHFIFTIESTGSMPPEVLFTEAVKILEEKCARV 367
Query: 378 ITELS 382
I+ELS
Sbjct: 368 ISELS 372
>gi|168042851|ref|XP_001773900.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674744|gb|EDQ61248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 360
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/360 (63%), Positives = 278/360 (77%), Gaps = 15/360 (4%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+LPPH+E QRTRV C DAP +TE+V YSGAY + GVDNSL+++ FC N RVE+I + ++
Sbjct: 12 ELPPHLELQRTRVVCAPDAPSYTESVQYSGAYMAYGVDNSLRIEDFCKNLRVEIISMNEE 71
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
D+EFD++GIDAAIANAFRRILIAE+PTMAIEKV IANNTSVIQDEVLAHRLGL+PI DP
Sbjct: 72 DIEFDIVGIDAAIANAFRRILIAEVPTMAIEKVYIANNTSVIQDEVLAHRLGLLPIKADP 131
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL---TVKTNELKWLPNGSELPLETKPDS 203
RLF+Y SE + +NEKNTIVFK+ V+C R G R+ +V ++++KWLP GSE+P T
Sbjct: 132 RLFDYKSEEENANEKNTIVFKIDVVCTRKGERVLNSSVTSDQMKWLPEGSEMPFNTM--- 188
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHA 262
+TSF SSQ LP I DI +A+L PGQ IELE HA+KG G HA
Sbjct: 189 ------TKFTSFGSSQKNLPGLPAEGISCQYPDIIVAKLRPGQAIELEGHAIKGSGNIHA 242
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KWSPVATA YRMLPE+ L+ED++ + AE+LV+ CP VFDIED+G+ KK A VA+PR CT
Sbjct: 243 KWSPVATARYRMLPEVNLMEDIQGKLAEELVQKCPTGVFDIEDVGTVKK-AIVARPRNCT 301
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
LCREC+R G +W+KRV + RVKDHFIFTIESTGAL PE LFTEA+KIL +KC R+ITELS
Sbjct: 302 LCRECVR-GTDWDKRVQLTRVKDHFIFTIESTGALRPEVLFTEAIKILNEKCHRIITELS 360
>gi|302774338|ref|XP_002970586.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
gi|300162102|gb|EFJ28716.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
Length = 353
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/359 (66%), Positives = 276/359 (76%), Gaps = 17/359 (4%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
LP H+E QRTRV C DAP +TE V YSGAY+S+ DNSL+L F NF VE+ LT+DD
Sbjct: 8 LPAHLELQRTRVICASDAPSYTETVQYSGAYSSINYDNSLRLGDFRRNFHVEIKSLTEDD 67
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFD+IGIDAA+ANAFRRILIAE+PTMAIEKVLI +NTSVIQDEV AHRLGL+PI DPR
Sbjct: 68 LEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDEVFAHRLGLVPIKADPR 127
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRL---TVKTNELKWLPNGSELPLETKPDSN 204
LF + D + EKNTIVF L V C R G R+ +VK+++LKWLP GS + DSN
Sbjct: 128 LFNEKTNEDVATEKNTIVFSLEVKCTRQGDRMINASVKSDQLKWLPGGSLYSM--TDDSN 185
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
+TYTSFS QD + N I P DI +A+L PGQ IELEAHAVKGIGKTHAK
Sbjct: 186 -----KTYTSFSCRQDTI----QNDIAPRYKDILLAKLRPGQAIELEAHAVKGIGKTHAK 236
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
WSPVATA YRMLPE+VLLE++EDE AE+LV+ CP+ VFDIEDI G KRA VA PR+CTL
Sbjct: 237 WSPVATAAYRMLPEVVLLEEIEDELAEELVQKCPMKVFDIEDIMGG-KRARVAAPRSCTL 295
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
CREC+R G++WEKRV +RRVKDHFIFT+ESTGAL PE LFTEAVKIL KC+R+ ELS
Sbjct: 296 CRECIR-GDDWEKRVQLRRVKDHFIFTVESTGALPPEVLFTEAVKILSAKCQRIYNELS 353
>gi|302770012|ref|XP_002968425.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
gi|300164069|gb|EFJ30679.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
Length = 352
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/359 (66%), Positives = 276/359 (76%), Gaps = 17/359 (4%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
LP H+E QRTRV C DAP +TE V YSGAY+S+ DNSL+L F NF VE+ LT+DD
Sbjct: 7 LPAHLELQRTRVICASDAPSYTETVQYSGAYSSINYDNSLRLGDFRRNFHVEIKSLTEDD 66
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFD+IGIDAA+ANAFRRILIAE+PTMAIEKVLI +NTSVIQDEV AHRLGL+PI DPR
Sbjct: 67 LEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDEVFAHRLGLVPIKADPR 126
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRL---TVKTNELKWLPNGSELPLETKPDSN 204
LF + D + EKNTIVF L V C R G R+ +VK+++LKWLP GS + DSN
Sbjct: 127 LFNEKTNEDVATEKNTIVFSLEVKCTRQGDRMINASVKSDQLKWLPGGSLYSM--TDDSN 184
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
+TYTSFS QD + N I P DI +A+L PGQ IELEAHAVKGIGKTHAK
Sbjct: 185 -----KTYTSFSCRQDTI----QNDIAPRYKDILLAKLRPGQAIELEAHAVKGIGKTHAK 235
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
WSPVATA YRMLPE+VLLE++EDE AE+LV+ CP+ VFDIEDI G KRA VA PR+CTL
Sbjct: 236 WSPVATAAYRMLPEVVLLEEIEDELAEELVQKCPMKVFDIEDIMGG-KRARVAAPRSCTL 294
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
CREC+R G++WEKRV +RRVKDHFIFT+ESTGAL PE LFTEAVKIL KC+R+ ELS
Sbjct: 295 CRECIR-GDDWEKRVQLRRVKDHFIFTVESTGALPPEVLFTEAVKILSAKCQRIYNELS 352
>gi|108707637|gb|ABF95432.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 352
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/303 (68%), Positives = 249/303 (82%), Gaps = 6/303 (1%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
KLP H+E QRTRV C DAP++TE Y+GA+A+MG+DNS+ D FC NF+V V RLT+D
Sbjct: 23 KLPEHLEVQRTRVVCKGDAPVNTEGFQYAGAFAAMGIDNSVSADKFCKNFKVVVNRLTED 82
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
DMEFD+IGIDA++ANAFRRILIAE+PTMAIEKVL+A+NTSVI DEVL+HRLGLIP+ DP
Sbjct: 83 DMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHRLGLIPLDADP 142
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
RLFEY+SEND E+NTIV+KLHV C++G PRLTVK+ +L+WLP GS+LPL + S
Sbjct: 143 RLFEYISENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGSQLPLASPAQSG-- 200
Query: 207 SKPRTYTSFSSSQ-DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
K +TYTSFS SQ D+L + + DITIARLGPGQ IELE HAVKGIGK HAKWS
Sbjct: 201 DKQKTYTSFSQSQKDILEKPLGVKFK---DITIARLGPGQAIELEVHAVKGIGKVHAKWS 257
Query: 266 PVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PVATAWYRMLPE+VL E+++D DAE LV CPVNVFDIED+G+G+KRA VA+PRACTLCR
Sbjct: 258 PVATAWYRMLPEVVLREEIKDADAEMLVAKCPVNVFDIEDLGNGEKRAVVARPRACTLCR 317
Query: 326 ECL 328
+C+
Sbjct: 318 QCV 320
>gi|218191485|gb|EEC73912.1| hypothetical protein OsI_08749 [Oryza sativa Indica Group]
Length = 332
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/358 (59%), Positives = 258/358 (72%), Gaps = 46/358 (12%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTK 85
+KLP H+E QRTRV C DAP++TE Y+GAY++MG+DNS+ + FC NF+VE+ RLT+
Sbjct: 20 KKLPEHLEVQRTRVVCKADAPVNTEGFQYAGAYSAMGIDNSVSAEKFCKNFKVEISRLTE 79
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
DDMEFD+IGIDA+IANAFRRILIAELPTMAIEKVL+ +NTSVI DEVL+HRLGLIP+ D
Sbjct: 80 DDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRLGLIPLDAD 139
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
PR FEYMSEND NE+NTIV+KLHV C++G PRLTVK+ +L+WLP GS LPL + S
Sbjct: 140 PRHFEYMSENDVPNERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGSRLPLASPAQSR- 198
Query: 206 SSKPRTYTSFSSSQ-DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
K +TYTSFS SQ D+L + + DITIARLGPGQ I LE H VKG+GK HAKW
Sbjct: 199 -YKQKTYTSFSQSQKDILEKPLGVKFK---DITIARLGPGQAIVLEVHGVKGMGKVHAKW 254
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPVATAWYRM PE+V ++++ ++AEKLVK CPVNVFDIED+G+
Sbjct: 255 SPVATAWYRMFPEVVFRKEIKGDNAEKLVKKCPVNVFDIEDLGN---------------- 298
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
TIESTG L PE LFTEAV+ILE+KCERVI+ELS
Sbjct: 299 ------------------------VTIESTGGLPPEALFTEAVRILEEKCERVISELS 332
>gi|42571933|ref|NP_974057.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195617|gb|AEE33738.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 302
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 224/272 (82%), Gaps = 5/272 (1%)
Query: 9 KKKEAESFSIWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSL 67
+K+ A++F+I DLPDVP LPPH++ Q+TRV +AP HT + +YSG Y +S D+++
Sbjct: 6 EKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNV 65
Query: 68 QLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSV 127
+L +F +NF+V+V+ LTK DMEFD+IGIDAA ANAFRRILIAE+P+MAIEKVLIA NTSV
Sbjct: 66 KLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSV 125
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
I DEVLAHR+GLIPI DPRLFEY+SE+D +NEKNTIVFKLHV C + PRL V T++LK
Sbjct: 126 IIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLK 185
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
WLPNGSEL E++ N +SKP+TYTSFS SQD LPEF+NNPI P LDI IA+L PGQE
Sbjct: 186 WLPNGSELLRESE---NKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQE 242
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
IELEAHAVKGIGKTHAKWSPV TAWYRM PE+
Sbjct: 243 IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEV 274
>gi|297599856|ref|NP_001047973.2| Os02g0723600 [Oryza sativa Japonica Group]
gi|45736002|dbj|BAD13030.1| putative RNA polymerase subunit [Oryza sativa Japonica Group]
gi|222623582|gb|EEE57714.1| hypothetical protein OsJ_08197 [Oryza sativa Japonica Group]
gi|255671218|dbj|BAF09887.2| Os02g0723600 [Oryza sativa Japonica Group]
Length = 300
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 189/359 (52%), Positives = 231/359 (64%), Gaps = 80/359 (22%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTK 85
+KLP H+E QRTRV C DAP++TE Y+GAY++MG+DNS+ + FC NF+VE+ RLT+
Sbjct: 20 KKLPEHLEVQRTRVVCKADAPVNTEGFQYAGAYSAMGIDNSVSAEKFCKNFKVEISRLTE 79
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
DDMEFD+IGIDA+IANAFRRILIAELPTMAIEKVL+ +NTSVI DEVL+HRLGLIP+ D
Sbjct: 80 DDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRLGLIPLDAD 139
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
PR FEYMSEND NE+NTIV+KLHV C++G PRLTVK+ +L+WLP GS LPL + S
Sbjct: 140 PRHFEYMSENDVPNERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGSRLPLASPAQSR- 198
Query: 206 SSKPRTYTSFSSSQ-DLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
K +TYTSFS SQ D+L P+ DITIARLGPGQ
Sbjct: 199 -YKQKTYTSFSQSQKDIL----EKPLGVKFKDITIARLGPGQ------------------ 235
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
+V ++++ ++AEKLVK CPVNVFDIED+G+
Sbjct: 236 --------------VVFRKEIKGDNAEKLVKKCPVNVFDIEDLGN--------------- 266
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
TIESTG L PE LFTEAV+ILE+KCERVI+ LS
Sbjct: 267 -------------------------VTIESTGGLPPEALFTEAVRILEEKCERVISGLS 300
>gi|255071753|ref|XP_002499551.1| predicted protein [Micromonas sp. RCC299]
gi|226514813|gb|ACO60809.1| predicted protein [Micromonas sp. RCC299]
Length = 394
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 183/404 (45%), Positives = 240/404 (59%), Gaps = 59/404 (14%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTK 85
+++ +I+ QR V C D HT YSGAYASMG+DNS + F NF++E+ +
Sbjct: 2 EEIAANIQTQREFVTCGADENRHTAEHQYSGAYASMGIDNSFSMQSFRENFKMEITHMDA 61
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ + F++ GI AIANAFRRILIAE+PTMAIEKV + NNTSVIQDEV AHRLGLIPI D
Sbjct: 62 ERVVFEMQGISPAIANAFRRILIAEVPTMAIEKVYMVNNTSVIQDEVFAHRLGLIPIRAD 121
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCER-------GGPRLT--VKTNELKWLPNGSELP 196
PRLFEY +E +T NE+NTIVFK++V C R GP + V TNEL WLP GSELP
Sbjct: 122 PRLFEYKAEGETYNERNTIVFKMNVRCYREKTDDGSKGPLMNSFVYTNELVWLPKGSELP 181
Query: 197 LETKPDSNPSSKPRTYTSFSSSQ--------------------DLLPEFSNNPIRPML-- 234
PD +T+F+ SQ ++ P + +N +
Sbjct: 182 ----PDEESK-----FTAFTQSQAEYLKERNDEAAAAAAAAGEEVTPLYGDNDPNEIATV 232
Query: 235 --DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDAE 290
DI + ++ GQEIELEAH VKG GK HAKWSPV T WYRM+P++ ++ ++ EDA+
Sbjct: 233 HDDILLCKMVAGQEIELEAHCVKGQGKEHAKWSPVGTTWYRMVPKVEFIDKDYLDGEDAD 292
Query: 291 KLVKTCPVNVFD--------IEDIGS--GKKRATVAQPRACTLCRECLR--CGE-EWEKR 337
+K C N FD E G G+K V R C C E +R CGE W+++
Sbjct: 293 VFMKEC--NDFDPSHNCYGWFEKDGGKKGEKCVKVVNERGCDYCLERVRTLCGEPGWDEK 350
Query: 338 VSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
V + + K HFIFT+E+ G L P+ LF EAVK+L KC+ V++ L
Sbjct: 351 VRVLKSKSHFIFTVETAGQLPPDVLFKEAVKVLASKCQSVLSTL 394
>gi|440800830|gb|ELR21864.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 350
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/350 (47%), Positives = 224/350 (64%), Gaps = 24/350 (6%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD--MEFDL 92
++TRV AP++ S Y S+GVDN ++ +N ++++I + + FDL
Sbjct: 16 KKTRVGFTNPAPVYPGTSFASDTYQSLGVDNKFDINDLMSNLKIKIIDYKPKEGLLVFDL 75
Query: 93 IGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM 152
IG+DA +ANAFRRIL++E+PTMAIE V I NNTS+IQDEVLAHRLGLIPI VDPR FE+
Sbjct: 76 IGVDAPVANAFRRILLSEIPTMAIEHVWIHNNTSIIQDEVLAHRLGLIPIKVDPRKFEFK 135
Query: 153 SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTY 212
+ ++ T+VFKL V C R TN + P E +S S+ +
Sbjct: 136 KPGEEETDETTLVFKLKVRCTRSN-----NTN--------PQNPEEAYVNSKVYSRDLIW 182
Query: 213 TSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
+L F+++P RP+ DI IA+L PGQEIE+E KG GK HAKWSPV+TA+
Sbjct: 183 EPVGGQAEL---FADDPPRPVHDDILIAKLRPGQEIEVECRCAKGEGKEHAKWSPVSTAY 239
Query: 272 YRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
YR+LP+I ++D + ++A+KLV CP+NVFDIED G +A V R CT+CREC+R
Sbjct: 240 YRLLPDIKFVKDFKGQEAKKLVAKCPMNVFDIEDSG----KAYVKNQRNCTMCRECIR-E 294
Query: 332 EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+ W+KR+ + RVKDHFIF+IESTG L P LF EAVK+ KC V+TEL
Sbjct: 295 DGWDKRIKLLRVKDHFIFSIESTGILPPNVLFEEAVKVFMAKCHTVLTEL 344
>gi|307103493|gb|EFN51752.1| hypothetical protein CHLNCDRAFT_27642 [Chlorella variabilis]
Length = 381
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/362 (46%), Positives = 228/362 (62%), Gaps = 25/362 (6%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTK 85
Q+LP +E RTRV C D IHT + + + +AS+GVD + L+ F F+V++ R
Sbjct: 29 QQLPDALELARTRVLCGPDVNIHTTSTIAASQWASLGVDAAFDLEKFKKGFQVDITRYEG 88
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
DMEF++ G+ A+AN+ RRI+I+E PTMAIE V I NNTSVIQDEVL+HRLGLIP+ VD
Sbjct: 89 YDMEFEMKGVSCALANSLRRIMISEAPTMAIEHVYIVNNTSVIQDEVLSHRLGLIPLKVD 148
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCER----GGPRLTVKTNELKWLPNGSELPLETKP 201
PRLF+Y ++ D +E+NTIV KL V C R G V + +L+WLP GSE+P ET
Sbjct: 149 PRLFQYKAKEDAPSEQNTIVLKLKVECRRLPNSGMENDKVYSRDLQWLPEGSEMPDETS- 207
Query: 202 DSNPSSKPRTYTSFSSSQ-DLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGK 259
F+SSQ L+PE +RP+ DI IA+L PGQ IELE H +KG+G
Sbjct: 208 -----------CRFASSQAALVPE----DVRPVHDDILIAKLRPGQAIELECHCIKGVGD 252
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
HAKWSPVAT WYR++PE+VLL+ + AE+LV+ ++ +GSG V
Sbjct: 253 DHAKWSPVATTWYRLMPEVVLLQQPRGKIAEELVEQ---LPGLLQLLGSGDHATVVVGDA 309
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVIT 379
C+LC E + + +R++KDHFIFTIESTGA P LF AV+++ KC++V+
Sbjct: 310 PCSLCWGACVDKERYMPYLQLRKIKDHFIFTIESTGAWRPHELFKYAVQLMVSKCDKVLE 369
Query: 380 EL 381
L
Sbjct: 370 GL 371
>gi|281209634|gb|EFA83802.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 358
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 220/351 (62%), Gaps = 25/351 (7%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E QRTRV+ +T + YSGAY S+G DNS LD F NF++ V+ D + F+
Sbjct: 30 LENQRTRVRVGNAGNENTRGIYYSGAYTSLGYDNSFSLDKFKKNFKINVLSDKPDHLVFE 89
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+IG+DA IANA RRILI+E+PTMAIE+V + NNTS++QDEVLAHRLGLIPI VDP++F Y
Sbjct: 90 MIGVDAPIANALRRILISEIPTMAIERVFMINNTSILQDEVLAHRLGLIPIKVDPKIFNY 149
Query: 152 MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRT 211
++T++F L V C + T+ NG+ L SK T
Sbjct: 150 KEPGKEYTAEDTLIFTLKVRCYKDANGETI---------NGTVL-----------SKHLT 189
Query: 212 YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
+ ++ P +++P DI I +L PGQ +E++ + K IG+ H KWSPV TA+
Sbjct: 190 WVPTDDQNEMFPNEADHPRPAYDDIPIVKLRPGQALEVQCYCEKNIGREHIKWSPVGTAF 249
Query: 272 YRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
Y++LPEI + + V E A+KL ++CP+NV+DIED G +A A+P CT+CREC+R
Sbjct: 250 YKILPEISVSDKVTGEKAKKLKQSCPMNVYDIEDSG----KAFAARPMDCTMCRECIR-D 304
Query: 332 EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
E E V + RV+DHFIF+IES G ++P+TLF +A+KIL DKC V L+
Sbjct: 305 PEMEPFVKLERVRDHFIFSIESVGTIAPKTLFQDAIKILIDKCSTVENSLN 355
>gi|384248203|gb|EIE21688.1| insert subdomain of RNA polymerase alpha subunit [Coccomyxa
subellipsoidea C-169]
Length = 372
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 170/372 (45%), Positives = 226/372 (60%), Gaps = 35/372 (9%)
Query: 23 DVPQKLPPHIEFQRTRVQC----NLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRV 78
D P KLP H+E Q+ V C N + I + M+S ++GVDNS F +F+V
Sbjct: 23 DEPGKLPEHLEKQQQYVTCGNNLNYNVSIGSSAHMFS----ALGVDNSWSHKKFQRDFKV 78
Query: 79 EVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
+ + +DMEFD+IGID AIANA RRILI+E+PT+AIE V I NNTS+I EVL+HRLG
Sbjct: 79 AMKWVRGNDMEFDVIGIDPAIANALRRILISEIPTVAIEHVYIINNTSIIACEVLSHRLG 138
Query: 139 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT---VKTNELKWLPNGSEL 195
L+PI VDP L + S +T+ E N+IVFKL V C R G + VK+ +L+WLPNGSE+
Sbjct: 139 LVPIQVDPNLLQDKSGEETATETNSIVFKLDVRCRREGDMMVNEKVKSGQLRWLPNGSEM 198
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML---DITIARLGPGQEIELEAH 252
P ET ++SSQ+ L P L DI +A++ PGQEI LEAH
Sbjct: 199 PEETN------------CRYASSQEALL----GPAGARLVHDDILLAKMRPGQEIVLEAH 242
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
V+G G HAKWSPVATAWYR+ PE+ +L+ V A+ L CP +F +E G+ +R
Sbjct: 243 CVRGTGAEHAKWSPVATAWYRLQPEVAILQPVVGPKADALAAACP-GLFTVEGSGA-SRR 300
Query: 313 ATVAQPRACTLCRECLR---CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
A R E +R EEW + V +R+ KDHFIFTIESTG L+P+ LF A+ +
Sbjct: 301 AVAGDARQHEKQLEKVRRMSGEEEWSEHVELRKRKDHFIFTIESTGILAPDQLFLRALDV 360
Query: 370 LEDKCERVITEL 381
L KC++++ L
Sbjct: 361 LAAKCDKLLEHL 372
>gi|84000223|ref|NP_001033213.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos taurus]
gi|122143987|sp|Q32L22.1|RPAC1_BOVIN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1
gi|81673907|gb|AAI09804.1| Polymerase (RNA) I polypeptide C, 30kDa [Bos taurus]
gi|296474425|tpg|DAA16540.1| TPA: DNA-directed RNA polymerases I and III subunit RPAC1 [Bos
taurus]
Length = 346
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 224/351 (63%), Gaps = 18/351 (5%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y+ G D++ D F NFRV+V+ + ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
++ D E +T+ F+L V C R P +++ P E + ++
Sbjct: 125 RNQGDEGGTEIDTLQFRLQVRCTR-NPHAAKDSSD----------PNELYVNHRVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADLFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP+I LLE VE E AE+L + V ++++I GKK A VA PR T RE R
Sbjct: 232 SYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFR- 289
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E+ +K V + RV+DHFIF++ESTG L P+ L +EA+K+L KC+R + EL
Sbjct: 290 NEKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
>gi|440902447|gb|ELR53239.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos grunniens
mutus]
Length = 343
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 166/357 (46%), Positives = 223/357 (62%), Gaps = 33/357 (9%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y+ G D++ D F NFRV+V+ + ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS---- 206
++ D E +T+ F+L V C R P K S+P+
Sbjct: 125 RNQGDEGGTEIDTLQFRLQVRCTRN--------------------PHAAKDSSDPNELYV 164
Query: 207 --SKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
++ T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+
Sbjct: 165 MYTRHMTWVPLGNQADLFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKF 222
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPVATA YR+LP+I LLE VE E AE+L + V ++++I GKK A VA PR T
Sbjct: 223 SPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFS 281
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
RE R E+ +K V + RV+DHFIF++ESTG L P+ L +EA+K+L KC+R + EL
Sbjct: 282 REVFR-NEKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 337
>gi|303277947|ref|XP_003058267.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460924|gb|EEH58218.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 410
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 174/388 (44%), Positives = 225/388 (57%), Gaps = 50/388 (12%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
I+ Q+ V C D H YSGAYA++G+D++ + F + F++EV L + +EF+
Sbjct: 35 IQKQKAFVTCASDENKHVNEHAYSGAYAALGIDSAFTAEKFRDEFKLEVTHLDDEKVEFE 94
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ G+ AIANAFRRILIAE+PTMAIEKV + NNTSVIQDEV AHRLGLIPI DPRLF+
Sbjct: 95 MQGLSPAIANAFRRILIAEVPTMAIEKVFMVNNTSVIQDEVFAHRLGLIPIRADPRLFDL 154
Query: 152 MSENDTSNEKNTIVFKLHVLCER----GGPRLT-----VKTNELKWLPNGSELPLETKPD 202
E DT EKNTIVFK+ V C R G + V T+ L WLPNGSELP PD
Sbjct: 155 RGEGDTPTEKNTIVFKMCVKCTREKTTDGTKGALINDKVYTDSLVWLPNGSELP----PD 210
Query: 203 SNPSSKPRTYTSFSSSQ-DLLPE-------------FSNNPIRPML------DITIARLG 242
+T FS Q + L + F+ N P + DI + ++
Sbjct: 211 EETK-----FTQFSCDQGEYLKKRNKESKELGEKEYFNRNGKDPNVISTVHDDILLVKMV 265
Query: 243 PGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED-VEDEDAEKLVKTCPVNVF 301
GQEIELEAH KG GK HAKWSPV T WYRM+P++ + EDA+ ++ C F
Sbjct: 266 AGQEIELEAHCTKGDGKEHAKWSPVGTTWYRMVPQVTFPSGPLTGEDADVFMRECA--DF 323
Query: 302 D-----IEDIGSGKKRATVAQPRACTLCRECLRC--GE-EWEKRVSIRRVKDHFIFTIES 353
D E +GS +R R C C E +R GE WE++V + + KDHFIFT+ES
Sbjct: 324 DDAHACYERVGS-DRRVVAKNERGCEFCVERVRALSGEPGWEEKVQLLKKKDHFIFTVES 382
Query: 354 TGALSPETLFTEAVKILEDKCERVITEL 381
TG + PE +F EAV +L KC+ V++ L
Sbjct: 383 TGQMPPELIFKEAVNVLASKCQSVLSAL 410
>gi|149732228|ref|XP_001502091.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Equus caballus]
Length = 346
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 221/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ DHF NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDHFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI VDPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHVDPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ + + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PSELYVNHKVYTRHMIWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GDAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-HEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|426250337|ref|XP_004018893.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ovis aries]
Length = 346
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 223/351 (63%), Gaps = 18/351 (5%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y G D++ D F NFRV+V+ + ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYC--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
++ D E +T+ F+L V C R P +++ P E + ++
Sbjct: 125 RNQGDEGGTEIDTLQFRLQVRCTR-NPHAAKDSSD----------PNELYVNHRVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADLFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP+I LLE VE E AE+L + V ++++I GKK A VA PR T RE R
Sbjct: 232 SYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFR- 289
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E+ +K V + RV+DH+IF++ESTG L P+ L +EA+K+L KC+R + EL
Sbjct: 290 NEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
>gi|328866801|gb|EGG15184.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 355
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 163/358 (45%), Positives = 222/358 (62%), Gaps = 34/358 (9%)
Query: 26 QKLPPHI-EFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLT 84
+K+P I E QRTRV +T V YSGAY S+G DNS L+ F NF+++V++
Sbjct: 18 EKVPNEILENQRTRVSVGNAGVENTRGVYYSGAYTSLGYDNSFSLERFKKNFQIKVLQDK 77
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
D + F++IG+DA IANA RRILIAE+PTMAIEKV I NNTS++QDEVLAHRLGLIPI V
Sbjct: 78 PDHLVFEMIGVDAPIANALRRILIAEIPTMAIEKVFIINNTSILQDEVLAHRLGLIPIKV 137
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLC--ERGGPRL--TVKTNELKWLPNGSELPLETK 200
DPR F + + ++T++FKL+V C + G + TV + +LKW P + E+
Sbjct: 138 DPRKFNFKQASKEYTAEDTLIFKLNVRCYKDENGETVNGTVTSGQLKWEPTEDQ---ESM 194
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
NP PR P+ DI I +L PGQ ++++ + K IG+
Sbjct: 195 FGENPEDFPR------------------PVHD--DIPIVKLRPGQTVDIQLYCEKNIGRE 234
Query: 261 HAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
H KWSPV TA YR++P+I + + + AEKL TCP NVFDIED + A+P
Sbjct: 235 HIKWSPVGTASYRLMPDITVDSSKFDKKQAEKLKATCPKNVFDIED----SYQVIAARPL 290
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
CT+CREC+R E+E V + R++DHFI++IES GAL P+ LF EA+KIL +KC+ +
Sbjct: 291 DCTMCRECIR-DPEFENVVKLERIRDHFIYSIESLGALPPKVLFQEAIKILIEKCDDI 347
>gi|410959240|ref|XP_003986220.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Felis catus]
Length = 346
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 224/351 (63%), Gaps = 18/351 (5%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y+ G D++ D F NFRV+V+ L ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDCFEKNFRVDVVHLDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSEND-TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
++ D E +T+ F+L V C R P +++ P E + ++
Sbjct: 125 RNQGDEEGTEIDTLQFRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADLFPEGTIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP+I LLE VE + AE+L + V +++++ GKK A VA PR T RE R
Sbjct: 232 SYRLLPDITLLEPVEGDAAEELRRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR- 289
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E+ +K V + RV+DH+IF++ESTG L PE L +EA+K+L KC+R + EL
Sbjct: 290 NEKLKKVVRLARVRDHYIFSVESTGVLPPEVLVSEAIKVLMGKCQRFLDEL 340
>gi|57094492|ref|XP_532147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Canis lupus familiaris]
Length = 346
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 221/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE-NDTSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ +D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDDEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + S+ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYSRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GDAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-KEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|444725444|gb|ELW66008.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Tupaia
chinensis]
Length = 346
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQEDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-NEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|42560246|ref|NP_976035.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Homo sapiens]
gi|332824144|ref|XP_001136605.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Pan troglodytes]
gi|397526795|ref|XP_003833302.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pan paniscus]
gi|426353284|ref|XP_004044127.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Gorilla gorilla gorilla]
gi|3914807|sp|O15160.1|RPAC1_HUMAN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPA39;
AltName: Full=RPC40
gi|2266929|gb|AAC14354.1| RNA polymerase I subunit hRPA39 [Homo sapiens]
gi|14250788|gb|AAH08863.1| Polymerase (RNA) I polypeptide C, 30kDa [Homo sapiens]
gi|119624610|gb|EAX04205.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_b [Homo
sapiens]
gi|261858766|dbj|BAI45905.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|312152392|gb|ADQ32708.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|410212776|gb|JAA03607.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410248096|gb|JAA12015.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410296802|gb|JAA27001.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410337835|gb|JAA37864.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
Length = 346
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|301757344|ref|XP_002914512.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Ailuropoda melanoleuca]
gi|281345711|gb|EFB21295.1| hypothetical protein PANDA_002414 [Ailuropoda melanoleuca]
Length = 346
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ L ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHLDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 AIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ G+K A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGEKVARVANPRLDTFSREVFR-NEKLKKMVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|120538451|gb|AAI30019.1| Polr1c protein [Mus musculus]
Length = 347
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 165/354 (46%), Positives = 222/354 (62%), Gaps = 24/354 (6%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G YA G D++ + F NFRV+V+++ +D +EFD
Sbjct: 8 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 65
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 66 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 125
Query: 152 MSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSS 207
++ + E +T+ F+L V C R PN S P E + +
Sbjct: 126 RNQGEEEGTEIDTLQFRLQVRCTRN--------------PNAAKDSSDPNELYVNHKVYT 171
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+ T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPV
Sbjct: 172 RHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPV 229
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP I LLE VE E AE+L + V ++E++ GKK A VA R T RE
Sbjct: 230 ATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREI 288
Query: 328 LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
R E+ +K V + RV+DH+IF++ESTG L P+ L +EA+KIL KC R + EL
Sbjct: 289 FR-HEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 341
>gi|297678210|ref|XP_002816974.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pongo abelii]
Length = 346
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHN--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|119226251|ref|NP_033111.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Mus musculus]
gi|341942146|sp|P52432.3|RPAC1_MOUSE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPC40
gi|74205031|dbj|BAE20986.1| unnamed protein product [Mus musculus]
gi|74226711|dbj|BAE27005.1| unnamed protein product [Mus musculus]
gi|148691536|gb|EDL23483.1| RNA polymerase 1-1, isoform CRA_a [Mus musculus]
Length = 346
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 165/354 (46%), Positives = 222/354 (62%), Gaps = 24/354 (6%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G YA G D++ + F NFRV+V+++ +D +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 124
Query: 152 MSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSS 207
++ + E +T+ F+L V C R PN S P E + +
Sbjct: 125 RNQGEEEGTEIDTLQFRLQVRCTRN--------------PNAAKDSSDPNELYVNHKVYT 170
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+ T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPV
Sbjct: 171 RHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPV 228
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP I LLE VE E AE+L + V ++E++ GKK A VA R T RE
Sbjct: 229 ATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREI 287
Query: 328 LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
R E+ +K V + RV+DH+IF++ESTG L P+ L +EA+KIL KC R + EL
Sbjct: 288 FR-HEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
>gi|14198113|gb|AAH08118.1| POLR1C protein, partial [Homo sapiens]
Length = 338
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 16 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 71
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 72 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 131
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 132 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 180
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 181 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 238
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 239 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 296
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 297 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 332
>gi|355561732|gb|EHH18364.1| hypothetical protein EGK_14941 [Macaca mulatta]
gi|355763424|gb|EHH62170.1| hypothetical protein EGM_20381 [Macaca fascicularis]
gi|380818186|gb|AFE80967.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
gi|384950476|gb|AFI38843.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
Length = 346
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEDGTEIDTLR 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-HEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|431838337|gb|ELK00269.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pteropus
alecto]
Length = 346
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F +FRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKSFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++ ++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVHEV-QGKKVARVANPRLDTFSREVFR-NEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC+R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
>gi|403261372|ref|XP_003923097.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Saimiri boliviensis boliviensis]
Length = 346
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ + F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQERFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYMNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKAVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|148691537|gb|EDL23484.1| RNA polymerase 1-1, isoform CRA_b [Mus musculus]
Length = 323
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 162/339 (47%), Positives = 219/339 (64%), Gaps = 26/339 (7%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G YA G D++ + F NFRV+V+++ +D +EFD++GIDAAIANAFRRI
Sbjct: 1 VHTTD--FPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFDMVGIDAAIANAFRRI 56
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN-DTSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY ++ + E +T+
Sbjct: 57 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNQGEEEGTEIDTLQ 116
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSSKPRTYTSFSSSQDLL 222
F+L V C R PN S P E + ++ T+ + D+
Sbjct: 117 FRLQVRCTRN--------------PNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVF 162
Query: 223 PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE 282
PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP I LLE
Sbjct: 163 PEGTIRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLE 220
Query: 283 DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRR 342
VE E AE+L + V ++E++ GKK A VA R T RE R E+ +K V + R
Sbjct: 221 PVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREIFR-HEKLKKAVRLAR 278
Query: 343 VKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
V+DH+IF++ESTG L P+ L +EA+KIL KC R + EL
Sbjct: 279 VRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 317
>gi|348576230|ref|XP_003473890.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cavia porcellus]
Length = 346
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFE+ +E D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEFRNEGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + D+ PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADVFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSYCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-HEKLKKAVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC+R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
>gi|332234165|ref|XP_003266281.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Nomascus leucogenys]
Length = 346
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ + F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQERFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|402867078|ref|XP_003897695.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1 [Papio anubis]
Length = 346
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 219/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NNFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFENNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEDGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIG HAK SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGNDHAKISPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-HEKLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|417409912|gb|JAA51445.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 347
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 216/336 (64%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+VI + ++ +EFD++GIDAAIANAFRR+
Sbjct: 25 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVIHMDENTLEFDMVGIDAAIANAFRRV 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 81 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R S P E + ++ T+ + DL P+
Sbjct: 141 FRLQVRCTRNS-----------HAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPDG 189
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 190 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 247
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++ ++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 248 GEAAEELRRCFSPGVIEVHEV-QGKKVARVANPRLDTFSREVFR-NEKLKKVVRLARVRD 305
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 306 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 341
>gi|296198261|ref|XP_002746623.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Callithrix jacchus]
Length = 346
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 158/336 (47%), Positives = 220/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ + F NFRV+V+ + ++ +EFD++GIDA+IANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQERFEKNFRVDVVHMDENSLEFDMVGIDASIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYMNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVVEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKAVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|575586|dbj|BAA06735.1| mouse RNA polymerase I 40kD subunit [Mus musculus]
Length = 355
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 220/354 (62%), Gaps = 24/354 (6%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G YA G D++ + F NFRV V+++ +D +EFD
Sbjct: 16 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVGVVQMDEDTLEFD 73
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+A +PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 74 MVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 133
Query: 152 MSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSS 207
++ + E +T+ F+L V C R PN S P E + +
Sbjct: 134 RNQGEEEGTEIDTLQFRLQVRCTRN--------------PNAAKDSSDPNELYVNHKVYT 179
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+ T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPV
Sbjct: 180 RHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPV 237
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP I LLE VE E AE+L + V ++E++ GKK A VA R T RE
Sbjct: 238 ATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREI 296
Query: 328 LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
R E+ +K V + RV+DH+IF++ESTG L P+ L +EA+KIL KC R + EL
Sbjct: 297 FR-HEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 349
>gi|308806201|ref|XP_003080412.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
gi|116058872|emb|CAL54579.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
Length = 382
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 162/375 (43%), Positives = 220/375 (58%), Gaps = 34/375 (9%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
K+ IE Q+ + D + + + Y GAYASM + + +D F F + + +++
Sbjct: 22 KMLAKIEEQKKYLIAGADRNANAKEIAYGGAYASMEGEGAFSVDAFRETFALTITDASEE 81
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F++ G AA ANAFRRI+I+E+PTMAIEKV + NNTSV+ DEV AHRLGL+PI DP
Sbjct: 82 RVVFEMEGCSAAFANAFRRIIISEVPTMAIEKVYMINNTSVVPDEVFAHRLGLVPIKADP 141
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL-----------TVKTNELKWLPNGSEL 195
FEY ND +NE NTIV LH C R RL +V +N L+W P+GS+L
Sbjct: 142 ARFEYRGPNDLANETNTIVLSLHARCHR--ERLDDGSLGEVVNRSVYSNALQWCPDGSQL 199
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAV 254
P E + Y+ F SQ F + + DI + +L PGQEIELE H V
Sbjct: 200 PEEERA---------KYSDFKRSQR--ESFGEEELGCVHDDILLVKLAPGQEIELECHCV 248
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI----GSG- 309
KGIG+ H+KWSPV T WYRM+PEI +LE + DA+ ++ C N D G G
Sbjct: 249 KGIGQEHSKWSPVGTCWYRMVPEITILEPITGADADVFMERC-ANFNDTHACYACEGKGD 307
Query: 310 KKRATVAQPRACTLCRECLR--CGE-EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
KK V + R C LC E +R GE W++++++R+ K+HFIFTIES G + P T+F EA
Sbjct: 308 KKTVKVVETRGCDLCVERVRELTGEPGWDEKIAVRKHKNHFIFTIESVGQMKPGTIFKEA 367
Query: 367 VKILEDKCERVITEL 381
VKIL KC+ V++ L
Sbjct: 368 VKILASKCQNVLSTL 382
>gi|395832416|ref|XP_003789267.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Otolemur garnettii]
Length = 346
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 219/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENTLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ + + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMMWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LL+ VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLKPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++++I GKK A V PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSQCFSPGVIEVQEI-QGKKVARVVNPRLDTFSREIFR-HEKLKKIVQLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+KIL KC+R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKILMGKCQRFLDEL 340
>gi|351707955|gb|EHB10874.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Heterocephalus glaber]
Length = 346
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 161/337 (47%), Positives = 221/337 (65%), Gaps = 22/337 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFE+ +E D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEFRNEGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + D+ PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADVFPE- 187
Query: 226 SNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
IRP+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE V
Sbjct: 188 --GMIRPVHNDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPV 245
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
E E AE+L V +++++ GKK A VA PR T RE R E+ +K V + RV+
Sbjct: 246 EGEVAEELSCCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-HEKLKKAVQLTRVR 303
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
DH+IF++ESTG L P+ L +EA+K+L KC+R + EL
Sbjct: 304 DHYIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
>gi|126310054|ref|XP_001362696.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Monodelphis domestica]
Length = 346
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/336 (48%), Positives = 219/336 (65%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G D++ F FRV+V+ + ++ +EFD+IGIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYC--GYDDAWDQSRFEREFRVDVVHMDENSLEFDMIGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEDGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P+ +++ PN EL L K +K T+ + D+ PE
Sbjct: 140 FQLKVKCTR-NPQAAKDSSD----PN--ELYLNHK----VYTKHMTWIPLGNQADVFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQE++L H VKGIGK HAK+SPVATA YR+LP+I LL+ +E
Sbjct: 189 TIRPVHD--DILIAQLRPGQELDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++D+ GKK ATVA PR T RE R E +K V + RV+D
Sbjct: 247 GEAAEELSQCFSPGVIQVQDV-KGKKVATVANPRLDTFSREIFR-HENLKKLVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L PE L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPEVLVSEAIKVLMGKCRRFMDEL 340
>gi|339521959|gb|AEJ84144.1| Polr1c protein [Capra hircus]
Length = 346
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 219/351 (62%), Gaps = 18/351 (5%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y G D++ D F NFRV+V+ + ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYC--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GID+AIANAFRRIL+AE+P MA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY
Sbjct: 65 MVGIDSAIANAFRRILLAEVPAMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 152 MSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
++ D E +T+ F+L V C R P +++ P E + ++
Sbjct: 125 RNQGDEGGTEIDTLQFRLQVRCTR-NPHAAKDSSD----------PNELYVNHRVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ S L PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGSQAALFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP+I LLE VE E+L + V ++++I GKK A+VA PR T RE R
Sbjct: 232 SYRLLPDITLLEPVEGGAGEELSRCFSPGVIEVQEI-QGKKVASVANPRLDTFSREVFR- 289
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E+ +K V + RV+DH+IF++ESTG L P+ L EA+K+L KC+R + EL
Sbjct: 290 NEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVIEAIKVLMGKCQRFLDEL 340
>gi|56605738|ref|NP_001008331.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Rattus
norvegicus]
gi|55778316|gb|AAH86597.1| Polymerase (RNA) I polypeptide C [Rattus norvegicus]
gi|149069363|gb|EDM18804.1| RNA polymerase 1-1, isoform CRA_a [Rattus norvegicus]
Length = 346
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 220/351 (62%), Gaps = 18/351 (5%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E RTRV + + G Y+ G D++ D F NFRV+V+ + + +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDESTLEFD 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 124
Query: 152 MSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ + E +T+ F+L V C R P +++ P E + ++
Sbjct: 125 RNPGEEEGTEIDTLQFRLQVRCTR-NPSAAKDSSD----------PNELYVNHKVYTRHM 173
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA
Sbjct: 174 TWVPLGNQADVFPEGTVRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATA 231
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP+I LLE VE E AE+L + V ++++ GKK A VA R T RE R
Sbjct: 232 SYRLLPDITLLEPVEGEAAEELSQCFSPGVIAVQEV-QGKKVARVANARLDTFSREIFR- 289
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E+ +K V + RV+DH+IF++ESTG L P+ L +EA+KIL KC R + EL
Sbjct: 290 HEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
>gi|327262314|ref|XP_003215970.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Anolis carolinensis]
Length = 344
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 165/354 (46%), Positives = 216/354 (61%), Gaps = 20/354 (5%)
Query: 29 PPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDM 88
P +E R+RV + + G Y+ G D++ F NFRV+VI + + +
Sbjct: 4 PGSVEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDRTKFEKNFRVDVISMDESTL 61
Query: 89 EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRL 148
EFD++GIDAAIANAFRRIL+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRL
Sbjct: 62 EFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPICADPRL 121
Query: 149 FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSK 208
FEY SE D +E NT+ F+L + C R P S P E + SK
Sbjct: 122 FEYKSEEDECDEINTLQFQLKIKCSRNPE-----------APKESSDPNELYINHKVYSK 170
Query: 209 PRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+ S D + N RP+ DI IA+L PGQEI++ H VKGIGK HAK+SPV
Sbjct: 171 HMEWVPLGSQADNM----NAGFRPVHDDILIAQLRPGQEIDVLMHCVKGIGKDHAKFSPV 226
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP+I LL+ VE E AEKL K V ++E+I GKK A VA R T RE
Sbjct: 227 ATASYRLLPDITLLKPVEGETAEKLKKCFSSGVIEVEEI-KGKKVARVANARLDTFSREI 285
Query: 328 LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
R ++ + V + RV+DH+IF++ESTG L P+ L +EA+KIL KC+ + EL
Sbjct: 286 FR-HDDLKNLVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILIGKCQHFLEEL 338
>gi|297290919|ref|XP_001096103.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1,
partial [Macaca mulatta]
Length = 298
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 151/307 (49%), Positives = 207/307 (67%), Gaps = 15/307 (4%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
NFRV+V+ + ++ +EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LA
Sbjct: 1 NFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILA 60
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HRLGLIPI DPRLFEY ++++ E +T+ F+L V C R P +++
Sbjct: 61 HRLGLIPIHADPRLFEYRNQDEDGTEIDTLRFRLQVRCTR-NPHAAKDSSD--------- 110
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
P E + ++ T+ + DL PE + P+ DI IA+L PGQEI+L H V
Sbjct: 111 -PNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHD--DILIAQLRPGQEIDLLMHCV 167
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KGIGK HAK+SPVATA YR+LP+I LLE VE E AE+L + V +++++ GKK A
Sbjct: 168 KGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVAR 226
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
VA PR T RE R E+ +K V + RV+DH+IF++ESTG L P+ L +EA+K+L KC
Sbjct: 227 VANPRLDTFSREIFR-HEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKC 285
Query: 375 ERVITEL 381
R + EL
Sbjct: 286 RRFLDEL 292
>gi|350586678|ref|XP_003482243.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sus scrofa]
Length = 346
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 158/336 (47%), Positives = 217/336 (64%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY + D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNLGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPSAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ AE+L + V ++++I GKK A VA PR T RE R + +K V + RV+D
Sbjct: 247 GDAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFR-NDMLKKVVRLARVRD 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 HYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|302845439|ref|XP_002954258.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
gi|300260463|gb|EFJ44682.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
Length = 354
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/363 (45%), Positives = 228/363 (62%), Gaps = 31/363 (8%)
Query: 27 KLPPHIEFQRTRVQCN--LDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLT 84
KLP H+E +R V C L+ +HT + +++MGVDNS L F +F++ + +L
Sbjct: 15 KLPEHLELRRDYVTCGDKLNYNVHT--FTSANVFSAMGVDNSWDLAQFKKDFKIIINKLD 72
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
K+ +EFD+IG+D AIANA RRILIAE+PTMAIE V + NNTS+IQDEVLAHRLG++P++
Sbjct: 73 KEVLEFDMIGVDPAIANALRRILIAEVPTMAIEHVFMINNTSIIQDEVLAHRLGMVPLLA 132
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
DP+LFE + +EKNT+VFKL V C+RG R+ + +L+WLP GSELP ET
Sbjct: 133 DPQLFEAKVAEEAPSEKNTLVFKLDVTCKRGENRMF--SGQLEWLPGGSELPEETT---- 186
Query: 205 PSSKPRTYTSFSSSQDLLPEFSN----NPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
F++ Q L F++ P DI +A+L PGQ I+LEAHA KG GK
Sbjct: 187 --------CRFAAGQAHL--FADPATPKPRAVHDDILLAKLRPGQTIQLEAHATKGRGKE 236
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVE-DED-AEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
HAKWSPVATAWYR+ P + +++DV D D ++L+ CP +F + D G RA A
Sbjct: 237 HAKWSPVATAWYRLQPVVHVIQDVAVDSDVGQELMSACP-GLF-VADEGGRVLRANDA-- 292
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVI 378
R + R L E + VS R+ KDHFIFTIES+GA+ P L +A+++L +K +
Sbjct: 293 RGHEMLRRLLE-QERFSSCVSYRKKKDHFIFTIESSGAVPPLELLGQALELLGEKARDLT 351
Query: 379 TEL 381
+L
Sbjct: 352 GKL 354
>gi|291000877|ref|XP_002683005.1| predicted protein [Naegleria gruberi]
gi|284096634|gb|EFC50261.1| predicted protein [Naegleria gruberi]
Length = 398
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/379 (40%), Positives = 226/379 (59%), Gaps = 53/379 (13%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
LPP +E RTRV+ AP T + Y ++ ++ DNS L+ F N R+ +++ ++D
Sbjct: 9 LPPQVEDLRTRVRVGRHAPTQTSTISYHSSFQNLNYDNSFSLEDFQENLRINILKRDEND 68
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ F++IGIDA IANAFRRI+++E+P+MAIEKV+ NTS+IQDEVLAHR+GL+PI DP
Sbjct: 69 LVFEMIGIDAPIANAFRRIMLSEVPSMAIEKVVYLTNTSIIQDEVLAHRIGLVPIRCDPD 128
Query: 148 LFEYMSENDTSNE------KNTIVFKLHVLCERG------------GPRLTVKTNELKWL 189
F + + + NE I+F+L+V CE+ V + +LKW+
Sbjct: 129 FF-FFARDINQNEDIILLDNEYILFELNVTCEKTLVPNPHNQNKLEYKHSKVYSGDLKWV 187
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIE 248
P G++ T F+ N IRP+ DI +A+L PGQ I
Sbjct: 188 PIGNQ-----------------STHFNGE---------NAIRPVYDDILLAKLNPGQSIH 221
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDAEKLVKTCPVNVFDIEDI 306
++ + VKGIG++HAKW PVATA YR++PE+V + E + A++LV+ CP+NVFDIED
Sbjct: 222 VQCYCVKGIGRSHAKWQPVATATYRLMPEVVFKGEPVTELKQAKELVEKCPMNVFDIEDS 281
Query: 307 GSGK--KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL--SPETL 362
+ + VA+P CT+CREC+R + W+KR+ + RVKDHFIF+IES G++ P +
Sbjct: 282 PQTEFDSKVRVARPMNCTMCRECIR-EDNWDKRIQLSRVKDHFIFSIESVGSIPGGPAEI 340
Query: 363 FTEAVKILEDKCERVITEL 381
F A+KI KCE + L
Sbjct: 341 FRRALKIFWQKCEAHLINL 359
>gi|149571084|ref|XP_001507416.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ornithorhynchus anatinus]
Length = 346
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/339 (46%), Positives = 212/339 (62%), Gaps = 26/339 (7%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G YA G D++ F FRV+V+++ +D +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYA--GFDDAWDQSRFEQGFRVDVVQMEEDSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV + NNTS++QDEVLAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVFVYNNTSIMQDEVLAHRLGLIPITADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSSKPRTYTSFSSSQDLL 222
F+L V C W P+ S P + + +K T+ + DL
Sbjct: 140 FQLKVKC--------------TWNPSAAKDSSDPNQLYLNHKVYTKHMTWVPLGNQADLF 185
Query: 223 PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE 282
PE + P+ DI I +L PGQE++L H VKG+GK HAK+SPV T YR+LP+I LL+
Sbjct: 186 PEGAIRPVHD--DILITQLRPGQELDLLMHYVKGVGKDHAKFSPVDTVSYRLLPDITLLQ 243
Query: 283 DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRR 342
VE E AEKL V I++I GKK A VA PR T RE R +E +K V + R
Sbjct: 244 PVEGEMAEKLKDCFSPGVIQIQEI-KGKKVAVVANPRLETFSREVFRH-DELKKLVRLAR 301
Query: 343 VKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
V+DH+IF++ESTG L P+ L +EA+KIL KC R + EL
Sbjct: 302 VRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
>gi|344264275|ref|XP_003404218.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Loxodonta africana]
Length = 306
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/308 (49%), Positives = 207/308 (67%), Gaps = 16/308 (5%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
NFRV+V+ + ++ +EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LA
Sbjct: 8 NFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILA 67
Query: 135 HRLGLIPIIVDPRLFEYMSEND-TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
HRLGLIPI DPRLFEY ++ D E +T+ F+L V C R P + +++
Sbjct: 68 HRLGLIPIHADPRLFEYRNQEDEEGTEIDTLQFRLQVRCTR-NPHASKDSSD-------- 118
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
P E + ++ T+ + D+ PE + P+ DI IA+L PGQEI+L H
Sbjct: 119 --PSELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLLMHC 174
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
VKGIGK HAK+SPVATA YR+LP+I LLE VE E AE+L + V +++++ GKK A
Sbjct: 175 VKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELRQCFSPGVIEVQEV-QGKKVA 233
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
VA PR T RE R E+ +K V + RV+DH+IF++ESTG L P+ L +EA+K+L K
Sbjct: 234 RVANPRLDTFSREVFR-NEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGK 292
Query: 374 CERVITEL 381
C R + EL
Sbjct: 293 CRRFLDEL 300
>gi|145349074|ref|XP_001418965.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579195|gb|ABO97258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 360
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/368 (42%), Positives = 213/368 (57%), Gaps = 30/368 (8%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E QR V+ + + V Y GAYAS+G D + + F F + + ++ F+
Sbjct: 5 LEEQRHYVRAGAEHNANVNEVAYGGAYASVGKDFAFSAERFRETFALTLTTSDEERCVFE 64
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L G A ANAFRRI+++E+PTMAIEKV + NNTSV+ DEV AHRLGL+PI DP +FEY
Sbjct: 65 LEGCSPAFANAFRRIILSEVPTMAIEKVFVVNNTSVVADEVFAHRLGLVPIKADPAMFEY 124
Query: 152 MSENDTSNEKNTIVFKLHVLCER-GGPRLT--------VKTNELKWLPNGSELPLETKPD 202
E D +NE NTIV K+HV C + P T V +N L W P GS+LP E
Sbjct: 125 RGEGDAANETNTIVLKMHVRCHKERNPDGTLGEVVNRSVYSNALTWCPEGSQLPEENGAK 184
Query: 203 SNPSSKPRTYTSFSSSQ-DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
Y+ F SQ +++ + + DI + +L PGQE+ELE H VKGIG+ H
Sbjct: 185 ---------YSDFKRSQKEVVGDQELGCVHD--DILLVKLAPGQEVELECHCVKGIGQEH 233
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP-----VNVFDIEDIGSGKKRATVA 316
AKWSPV T WY+M+PEI +LE + DA++ +K C + E G KK V
Sbjct: 234 AKWSPVGTCWYKMVPEITILEPITGADADEFMKKCANFSETHKCYACEGKGD-KKTVKVV 292
Query: 317 QPRACTLCRECLR--CGE-EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ R C C E +R GE W ++++R+ KDHFIFTIE+ G ++P T+F EAVKIL K
Sbjct: 293 ESRGCDFCVERVRELTGEPGWADKIAVRKRKDHFIFTIETIGQMAPGTIFKEAVKILASK 352
Query: 374 CERVITEL 381
+ V++ L
Sbjct: 353 AQNVLSTL 360
>gi|291396258|ref|XP_002714740.1| PREDICTED: RNA polymerase I subunit [Oryctolagus cuniculus]
Length = 358
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 158/348 (45%), Positives = 220/348 (63%), Gaps = 32/348 (9%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAE------------LPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
L+AE +PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++
Sbjct: 80 LLAEVSAGPVTAGAWGMPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQ 139
Query: 155 -NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+D E +T+ F+L V C R P +++ P E + ++ T+
Sbjct: 140 GDDEGTEIDTLQFRLQVRCTRN-PHAAKDSSD----------PNELYVNHKVYTRHMTWV 188
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
+ DL PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR
Sbjct: 189 PLGNQADLFPEGTIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYR 246
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEE 333
+LP+I LL +E E AE+L + V +++++ GKK A VA PR T RE R E+
Sbjct: 247 LLPDITLLAPIEGEAAEELSQCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEK 304
Query: 334 WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+K V + RV+DH+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 305 LKKLVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 352
>gi|213513431|ref|NP_001134298.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
gi|209732188|gb|ACI66963.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
Length = 353
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 158/336 (47%), Positives = 214/336 (63%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ L F NFR++V+++ + +EFD++GIDAAIANAFRRI
Sbjct: 31 VHTTD--YPGNYP--GYDDTWNLQKFQKNFRIDVVQMDETSLEFDMVGIDAAIANAFRRI 86
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVLI NNTS+IQDE+LAHRLGLIPI DPRLFEY + D E +TI
Sbjct: 87 LLAEVPTMAVEKVLIYNNTSIIQDEILAHRLGLIPIKADPRLFEYRNAGDEEGTEIDTIQ 146
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L + C R PR T S P E + SK + + D+ +
Sbjct: 147 LQLKIKCTR-NPRAT----------KDSADPRELYLNHMVYSKDMKWAPIGNQADVFADA 195
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI +A+L PGQE+++ H VKGIG+ HAK+SPVATA YR+LPEI L+E VE
Sbjct: 196 NIGPVHG--DILLAQLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMETVE 253
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++E+ G GK A V R T RE LR ++ + V + RV+D
Sbjct: 254 GEKAERLKRCFSPGVIEVENHG-GKVVAKVVNSRLDTCSREVLR-HDDLKNAVKLARVRD 311
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
HFIF++ESTG L+P+ L TEA+K+L KC+R + EL
Sbjct: 312 HFIFSVESTGILAPDVLVTEAIKVLMTKCQRFLNEL 347
>gi|66812176|ref|XP_640267.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74855077|sp|Q54SN4.1|RPAC1_DICDI RecName: Full=DNA-directed RNA polymerases I and III subunit rpac1;
Short=RNA polymerases I and III subunit AC1
gi|60468282|gb|EAL66291.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 345
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 213/354 (60%), Gaps = 36/354 (10%)
Query: 30 PHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDME 89
P++E +RT+V + YSGAY S+G DNS L+ F NF++ ++ + +++
Sbjct: 13 PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F++IGIDA IANA RRI+I+E+PTMAIEKV I NNTS++QDEVLAHRLG+IPI VDPR F
Sbjct: 73 FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGP-----RLTVKTNELKWLPNGSELPLETKPDSN 204
+ N ++T++F+L V CE+ T + L W+P +
Sbjct: 133 NFKLPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQ---------- 182
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAK 263
+++ P + P RPM DI I +L PGQ I+++ + K IG+ H K
Sbjct: 183 --------------EEMFPNEEDRP-RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREHIK 227
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
WSPV TA YR+ P I + + ++ + A +L++ CP VFDIED G + A+P CT+
Sbjct: 228 WSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIEDSG----QVVAARPLDCTM 283
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
CREC+R E+E+ V I RV+DHFIF+IESTGAL +F EA+KI +KC V
Sbjct: 284 CRECIR-DPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCNIV 336
>gi|255636318|gb|ACU18498.1| unknown [Glycine max]
Length = 233
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 142/212 (66%), Positives = 166/212 (78%), Gaps = 8/212 (3%)
Query: 18 IWDLPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFR 77
I L +VP KLPPH+E +TRV CN DAP+HT+ V YSGAYA MGVDNS++LD FC NF+
Sbjct: 28 ILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVDNSVRLDSFCENFK 87
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VEV RLT D+EFD+IGID AIANAFRRIL+AE+PTMAIE+V IANNTSV+QDEVL+HRL
Sbjct: 88 VEVKRLTDSDIEFDMIGIDPAIANAFRRILVAEVPTMAIERVYIANNTSVVQDEVLSHRL 147
Query: 138 GLIPIIVDPRLFEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
GLIPI DPRLFEY + D NEKNTIVFKLHV C+ G PR+TVK+++LKWLPNGSELP
Sbjct: 148 GLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELP 207
Query: 197 LE-TKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
E KP N SKP+T F L P F++
Sbjct: 208 CEDVKP--NAGSKPKTIYIFY----LQPRFTS 233
>gi|224047705|ref|XP_002195566.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Taeniopygia guttata]
Length = 346
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 216/336 (64%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G +++ F FRV+VIR +D +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYP--GYEDAWDQRRFEEAFRVDVIREEEDALEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT-SNEKNTIV 165
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDQEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L + C+R P+ ++++ P E + SK T+ + DL P+
Sbjct: 140 FQLKIKCKR-NPQAAKESSD----------PDELYFNHKVYSKHMTWVPLGNQTDLFPDA 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I LL+ VE
Sbjct: 189 DFRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
DE AE L K V +I++I +GKK A VA R T RE R E + V + RV++
Sbjct: 247 DEAAETLQKCFSPGVIEIQNI-NGKKVARVANARLDTFSREVFR-HEGLKNLVRLARVRN 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+KIL KC+R + EL
Sbjct: 305 HYIFSVESTGILPPDVLVSEAIKILMGKCQRFLNEL 340
>gi|50740586|ref|XP_419502.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Gallus gallus]
Length = 346
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 212/336 (63%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G D++ F FRV+V+R +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYP--GYDDAWDQRRFEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L + C R P+ ++++ P E + SK T+ + DL P+
Sbjct: 140 FQLKIKCSR-NPQAAKESSD----------PNELYFNHKVYSKHMTWVPLGNQTDLFPDA 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I LL+ VE
Sbjct: 189 DFRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
DE AE L K V +I++I GKK A VA R T RE R E + V + RV++
Sbjct: 247 DEAAETLQKCFSPGVIEIQNI-KGKKVARVANARLDTFSREVFR-HEGLKNLVRLARVRN 304
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L TEA+KIL KC+R + EL
Sbjct: 305 HYIFSVESTGILPPDVLVTEAIKILMGKCQRFLNEL 340
>gi|354492493|ref|XP_003508382.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cricetulus griseus]
Length = 302
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 204/311 (65%), Gaps = 22/311 (7%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
NFRV+V+ + ++ +EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LA
Sbjct: 4 NFRVDVVHMDENTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILA 63
Query: 135 HRLGLIPIIVDPRLFEYMSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG- 192
HRLGLIPI+ DPRLFEY + + E +T+ F+L V C + PN
Sbjct: 64 HRLGLIPILADPRLFEYRNPGEEEGTEIDTLQFRLQVRCTKN--------------PNAA 109
Query: 193 --SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S P E + ++ T+ + D+ PE + P+ DI IA+L PGQEI+L
Sbjct: 110 KDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLV 167
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
H VKGIGK HAK+SPVATA YR+LP+I LLE VE E AE+L + V +++++ G+
Sbjct: 168 MHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGQ 226
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
K A VA R T RE R E+ +K V + RV+DH+IF++ESTG L P+ L +EA+KIL
Sbjct: 227 KLARVANARLDTFSREIFR-NEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKIL 285
Query: 371 EDKCERVITEL 381
KC R + EL
Sbjct: 286 MGKCRRFLDEL 296
>gi|241730129|ref|XP_002412264.1| transferase, putative [Ixodes scapularis]
gi|215505503|gb|EEC14997.1| transferase, putative [Ixodes scapularis]
gi|442748497|gb|JAA66408.1| Putative rna polymerase i and iii subunit [Ixodes ricinus]
Length = 344
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/352 (42%), Positives = 216/352 (61%), Gaps = 18/352 (5%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
H+ RT V ++TE Y G +A G+D+S L F NF++ ++ L MEF
Sbjct: 3 HLHKMRTHVHMREHDLLNTETSDYPGTFA--GIDDSWDLKKFERNFQIGIVSLDDMTMEF 60
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D+IG++ AIANA RRIL+AE+PTMA +KV + NNTS++QDEVLAHR+GL+P +DPR+F+
Sbjct: 61 DMIGVNPAIANAIRRILLAEVPTMAPDKVFMYNNTSIVQDEVLAHRIGLVPFNIDPRMFD 120
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
Y ++ + ++T+ F+L V C R P + P E D ++
Sbjct: 121 YREKDSEGSPEDTVEFELKVKCTRN-----------PQAPKDATTPDELYKDHVVYTRHL 169
Query: 211 TYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
T+T S ++ F N P +P+ DI +A+L PGQEI+L+ H +KG G+ HAK+SPVAT
Sbjct: 170 TWTPIGSQAEI---FGNKPPKPVYDDIILAKLRPGQEIDLKLHCMKGTGQDHAKFSPVAT 226
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
A YR+LPEIVLL +V DE AE+L V ++++ G K A VA RA T R +
Sbjct: 227 ASYRLLPEIVLLREVRDEQAERLQGCFAKGVIELDETDDGHKVARVANARADTCSRNVFQ 286
Query: 330 CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
++ + V + RVKDHFIF++ESTGA P+ L TEA+K+L KC+ ++EL
Sbjct: 287 Y-DDLKDAVELTRVKDHFIFSVESTGAYPPDLLVTEAIKVLMAKCQAFLSEL 337
>gi|427788233|gb|JAA59568.1| Putative rna polymerase i and iii subunit [Rhipicephalus
pulchellus]
Length = 344
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 159/353 (45%), Positives = 214/353 (60%), Gaps = 20/353 (5%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
H+E RT V +HTE V + GA +GVD S F FRV +I + +EF
Sbjct: 3 HLERMRTHVHLREHDLLHTETVDHCGAI--LGVDYSWDFQKFVKKFRVGIISMDDTTIEF 60
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
DL+G+D +IANA RRIL+AE+PTMA +KV + NNT +IQDEVLAHR+GL+P +DPR+FE
Sbjct: 61 DLVGLDPSIANAIRRILLAEVPTMAPDKVYLYNNTGIIQDEVLAHRIGLVPFNIDPRMFE 120
Query: 151 YM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
Y SE+D S E +T+ F+L V C + P + P E D +K
Sbjct: 121 YRESESDGSPE-DTVEFELKVKCTKN-----------PQAPKDATTPDELYKDHMVYTKH 168
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
T+ S ++ F N P RP+ DI +A+L PGQEI+L+ H VKG G+ HAK+SPVA
Sbjct: 169 LTWNPLGSQAEI---FGNKPPRPVHDDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSPVA 225
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECL 328
TA YR+LPEI LL V DE AE+L V ++++ G K A VA RA T R
Sbjct: 226 TASYRLLPEIRLLRPVRDEQAERLQGCFSKGVIELDEEPDGHKVARVANARADTCSRNVF 285
Query: 329 RCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
R ++ + V + RVKDH+IF++ESTGA +P+TL TEA+K+L KC+ + EL
Sbjct: 286 RF-DDLKDAVELSRVKDHYIFSVESTGAYAPDTLVTEAIKVLMAKCQMFLDEL 337
>gi|49618929|gb|AAT68049.1| RNA polymerase I 140 kDa subunit [Danio rerio]
Length = 343
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 156/336 (46%), Positives = 212/336 (63%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ + F NFR+E+I ++ +EFD+IGIDAAIANAFRRI
Sbjct: 21 VHTTD--YPGNYP--GYDDTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRI 76
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIV 165
L+AE+PTMAIEKV I NNTS+IQDE+LAHRLGL+PI DPRLFEY SE+ E +TI
Sbjct: 77 LLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEIDTIQ 136
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L V C R PR P S P E + S + + D+ +
Sbjct: 137 LQLKVKCTR-NPR----------APKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADA 185
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ DI +A++ PGQE+++ H VKGIGK HAK+SPVATA YR+LPEI LL+ +E
Sbjct: 186 KIGPVHG--DILLAQVRPGQELDIVMHCVKGIGKNHAKFSPVATASYRLLPEITLLQTIE 243
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++E++ +G+K A V R T RE LR ++ + V + RV+D
Sbjct: 244 GEQAERLKRCFSPGVIELENV-NGRKVAKVVNSRLDTCSREVLR-HDDLKSLVKLGRVRD 301
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
HFIF++ESTG L P+ L TEA+ +L KC++ +TEL
Sbjct: 302 HFIFSVESTGILPPDVLVTEAINVLMSKCQKFLTEL 337
>gi|41056007|ref|NP_956860.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Danio rerio]
gi|34193909|gb|AAH56581.1| Polymerase (RNA) I polypeptide C [Danio rerio]
Length = 347
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 156/336 (46%), Positives = 212/336 (63%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ + F NFR+E+I ++ +EFD+IGIDAAIANAFRRI
Sbjct: 25 VHTTD--YPGNYP--GYDDTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIV 165
L+AE+PTMAIEKV I NNTS+IQDE+LAHRLGL+PI DPRLFEY SE+ E +TI
Sbjct: 81 LLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEIDTIQ 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L V C R PR P S P E + S + + D+ +
Sbjct: 141 LQLKVKCTR-NPR----------APKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADA 189
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ DI +A++ PGQE+++ H VKGIGK HAK+SPVATA YR+LPEI LL+ +E
Sbjct: 190 KIGPVHG--DILLAQVRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLLQTIE 247
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++E++ +G+K A V R T RE LR ++ + V + RV+D
Sbjct: 248 GEQAERLKRCFSPGVIELENV-NGRKVAKVVNSRLDTCSREVLR-HDDLKSLVKLGRVRD 305
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
HFIF++ESTG L P+ L TEA+ +L KC++ +TEL
Sbjct: 306 HFIFSVESTGILPPDVLVTEAINVLMSKCQKFLTEL 341
>gi|348538459|ref|XP_003456708.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Oreochromis niloticus]
Length = 351
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 160/340 (47%), Positives = 216/340 (63%), Gaps = 24/340 (7%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G D++ ++ F NFR++V+ L ++ MEFD++GIDAAIANAFRRI
Sbjct: 25 VHTTD--FPGNYP--GYDDTWNVEKFQKNFRIDVVHLDENSMEFDMVGIDAAIANAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----- 161
L+AE+PTMA+EKV I +NTS++QDEVLAHRLGLIPI DPRLFEY + + S E+
Sbjct: 81 LLAEVPTMAMEKVFIYSNTSIVQDEVLAHRLGLIPIKADPRLFEYRNTGEESAEEEGSEI 140
Query: 162 NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL 221
+TI +L + C R PR + +++ P E + SK + + D+
Sbjct: 141 DTIQLQLKIKCSR-NPRASKDSSD----------PRELYLNHMVYSKDIKWVPIGNQADV 189
Query: 222 LPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLL 281
+ P+ DI IA+L PGQE+++ H VKGIGK HAK+SPVATA YR+LPEI LL
Sbjct: 190 FADCCIGPVHD--DILIAQLRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLL 247
Query: 282 EDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIR 341
E VE E AE+L + V D+EDI +G K A V R T RE LR + + V +
Sbjct: 248 EVVEGEKAERLKQCFSRGVIDLEDI-NGTKVAKVVNSRLDTCSREVLR-HSDLKNVVKLG 305
Query: 342 RVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
RV+DHFIFT+ESTG L P+ L TEA+K+L KC+R + EL
Sbjct: 306 RVRDHFIFTVESTGILPPDVLVTEAIKVLMAKCQRFLNEL 345
>gi|449283222|gb|EMC89903.1| DNA-directed RNA polymerases I and III subunit RPAC1, partial
[Columba livia]
Length = 323
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/336 (46%), Positives = 212/336 (63%), Gaps = 20/336 (5%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G +++ F FRV++IR + +EFD++GIDAAIANAFRRI
Sbjct: 1 VHTTD--FPGNYP--GYEDAWDQRRFEEAFRVDIIREEEGALEFDMVGIDAAIANAFRRI 56
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 57 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEEGTEIDTLQ 116
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L + C R P+ ++++ P E + SK T+ + DL P+
Sbjct: 117 FQLKIKCSR-NPQAAKESSD----------PNELYFNHKVYSKHMTWVPLGNQTDLFPDA 165
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I LL+ +E
Sbjct: 166 DFRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIE 223
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
DE AE L K V +I+ I GKK A VA R T RE R E + V + RV++
Sbjct: 224 DEAAETLQKCFSPGVIEIQKI-KGKKVARVANARLDTFSREVFR-HENLKNLVRLARVRN 281
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
H+IF++ESTG L P+ L +EA+KIL KC+R + EL
Sbjct: 282 HYIFSVESTGILPPDVLVSEAIKILMGKCQRFLNEL 317
>gi|147901420|ref|NP_001085237.1| polymerase (RNA) I polypeptide C, 30kDa [Xenopus laevis]
gi|47937458|gb|AAH72033.1| MGC78824 protein [Xenopus laevis]
Length = 347
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 217/351 (61%), Gaps = 49/351 (13%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y MG D++ F NFR++++++ D +EFD++GIDA+IANAFRRI
Sbjct: 24 VHTTD--FPGNY--MGYDDTWNQGRFEKNFRIDIVKMEDDILEFDMVGIDASIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT-SNEKNTIV 165
L++E+PT+A+EKV + NNTS+IQDE+LAHRLGLIPI DPRLFEY S +D E +T+
Sbjct: 80 LLSEVPTVAVEKVYVYNNTSIIQDEILAHRLGLIPIRADPRLFEYRSADDAEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLT--------------VKTNELKWLPNGSELPLETKPDSNPSSKPRT 211
F+L+V C R PR + V T +KWLP G+++
Sbjct: 140 FELNVKCTR-NPRASKDCSDPNELYLNHKVYTGHMKWLPQGNQV---------------- 182
Query: 212 YTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
DL PE +P RP+ DI IA+L PGQEI + H VKGIGK HAK+SPVATA
Sbjct: 183 --------DLFPE--TDPPRPVHKDILIAQLRPGQEINVIMHCVKGIGKDHAKFSPVATA 232
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LPE+ LL +E E A+KL V ++++ +GK+ A V R T RE R
Sbjct: 233 SYRLLPEVTLLSSIEGELADKLQGCFSPGVISVDEV-NGKRVARVENARMDTCSREIFR- 290
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
++ + V + RV+DH+IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 291 HDDLKNLVRMARVRDHYIFSVESTGILPPDILVSEAIKVLMGKCRRFLDEL 341
>gi|301626012|ref|XP_002942192.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Xenopus (Silurana) tropicalis]
Length = 347
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 218/351 (62%), Gaps = 49/351 (13%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y MG +++ F NNFR++++++ D +EFD++GIDA+IANAFRRI
Sbjct: 24 VHTTD--FPGNY--MGYNDTWNYGRFENNFRIDIVKMEGDTLEFDMVGIDASIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS-ENDTSNEKNTIV 165
L+AE+PTMA+EKV + NNTS+IQDE+LAHRLGLIPI VDPRLFEY S E E +T+
Sbjct: 80 LLAEVPTMAVEKVYVYNNTSIIQDEILAHRLGLIPIRVDPRLFEYRSAEEGEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLT--------------VKTNELKWLPNGSELPLETKPDSNPSSKPRT 211
F+L+V C R PR + V T+ +KWLP G++
Sbjct: 140 FELNVKCTR-NPRASKDCSDPNELYLNHKVYTSHMKWLPQGNQ----------------- 181
Query: 212 YTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
DL PE +P RP+ DI IA+L PGQEI + H VKGIGK HAK+SPVATA
Sbjct: 182 -------SDLFPE--TDPPRPVHGDILIAQLRPGQEISVIMHCVKGIGKDHAKFSPVATA 232
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LPEI LL +E E A++L + V ++++ GK+ A V R T RE R
Sbjct: 233 SYRLLPEITLLCPIEGELADRLQRCFSPGVIGVDEV-DGKRVARVINARTDTCGREIFR- 290
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
++ + V + RV+D++IF++ESTG L P+ L +EA+K+L KC R + EL
Sbjct: 291 HDDLKDLVRMARVRDYYIFSVESTGILPPDILVSEAIKVLMGKCRRFLDEL 341
>gi|410929907|ref|XP_003978340.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Takifugu rubripes]
Length = 351
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/347 (45%), Positives = 212/347 (61%), Gaps = 38/347 (10%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y + D+S + F NF+++++ L + MEFD++G+DAAI NAFRRI
Sbjct: 25 VHTTD--FPGNYPNF--DDSWDMAKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----- 161
L+AE+PTMAIEKV I NNTS++QDEVLAHRLGLIPI DPRLFEY + D + E
Sbjct: 81 LLAEVPTMAIEKVFIYNNTSIVQDEVLAHRLGLIPIKADPRLFEYRNSGDEATENEGSEI 140
Query: 162 NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL 221
+TI +L + C R P +K S+P + +S
Sbjct: 141 DTIQLQLKISCSRN--------------------PASSKDSSDPRELYLNHMVYSKDIHW 180
Query: 222 LP------EFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
+P F+N I P+ DI IA+L PGQE+++ H +KGIGK HAK+SPVATA YR+
Sbjct: 181 VPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIKGIGKDHAKFSPVATASYRL 240
Query: 275 LPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEW 334
LPEI LLE VE E AE+L + V D+ED +GKK A VA R T RE LR ++
Sbjct: 241 LPEITLLEPVEGEKAERLQRCFFRGVIDLED-SNGKKVAKVANSRLDTCSREVLR-HDDL 298
Query: 335 EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+ V + R +DHFIFT+E+TG L P+ L TEA+K+L KC+R + EL
Sbjct: 299 KNVVKLGRHRDHFIFTVETTGILPPDVLVTEAIKVLMTKCQRFLNEL 345
>gi|390348474|ref|XP_795508.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Strongylocentrotus purpuratus]
Length = 350
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/368 (43%), Positives = 219/368 (59%), Gaps = 47/368 (12%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
H+E +TRV+ + + + G Y +G D+S +D F NFR++VI LT ++EF
Sbjct: 3 HVEDMKTRVRLLEHGVDNVHSSSFPGNY--VGSDDSWSMDKFTKNFRIDVISLTHSELEF 60
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D++G+D A+ANAFRRIL+AE+PTMAIEKV I NNTS+IQDE+LAHRLGLIPI DPR+FE
Sbjct: 61 DMVGVDPAVANAFRRILLAEVPTMAIEKVSIFNNTSIIQDEILAHRLGLIPIKADPRIFE 120
Query: 151 YMSENDTSNE----KNTIVFKLHVLCERG-------------GPRLTVKTNELKWLPNGS 193
Y E +T +E ++TI F+L V C + V T KW
Sbjct: 121 YREEVNTGDETGTGEDTIEFQLKVKCTKNPNASKDATDPDELYKNAKVTTEHFKW----- 175
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+PLE + + + P+ + + DI IA+L PGQEI+L+ H
Sbjct: 176 -IPLENQEE---TYGPKAFAPVNK-----------------DILIAKLRPGQEIDLKMHC 214
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
VKGIGK HAK+SPVATA YR++PEI+L ED+ E A+KL + V D+E +G A
Sbjct: 215 VKGIGKDHAKFSPVATASYRLMPEIILTEDIVGERAKKLQQCFSSGVIDVEK-RNGVPVA 273
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
VA PR T RE ++ + V + R++DHFIF++ESTGAL PE L +EA+ IL+ K
Sbjct: 274 VVACPRRDTCGREVF-SHDDLKDCVKLNRIRDHFIFSVESTGALRPEVLVSEAINILKSK 332
Query: 374 CERVITEL 381
C+ +L
Sbjct: 333 CKTFQQDL 340
>gi|346464743|gb|AEO32216.1| hypothetical protein [Amblyomma maculatum]
Length = 340
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 217/366 (59%), Gaps = 46/366 (12%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
H+E RT V +HTE + GA GVD+S + F NF+V ++ L MEF
Sbjct: 3 HVERMRTHVHLREHDLLHTETSDHCGARP--GVDDSWSIRKFAKNFKVGIVSLDDTTMEF 60
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D+IG++ AIANA RRIL+AE+PTMA +KV + NNTS++QDEVLAHR+GL+P +DPR+FE
Sbjct: 61 DMIGLNPAIANAIRRILLAEVPTMAPDKVYLYNNTSIVQDEVLAHRIGLVPFNIDPRMFE 120
Query: 151 YMSENDTSNEKNTIVFKLHVLCERG--GPR-----------LTVKTNELKWLPNGSELPL 197
Y + + ++T+ F+L V C + P+ V T LKW+P GS++ +
Sbjct: 121 YRESGNEGSPEDTVEFELKVKCTKNPHAPKDATVPDELYKDHVVYTKHLKWIPLGSQVEI 180
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKG 256
F N P +P+ DI +A+L PGQEI+L+ H +KG
Sbjct: 181 ---------------------------FGNKPPKPVHDDIILAKLRPGQEIDLKLHCLKG 213
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN-VFDIEDIGSGKKRATV 315
G+ HAK+SPVATA YR+LPEI LL V DE AE+L +TC N V ++++ G K A V
Sbjct: 214 TGQVHAKFSPVATASYRLLPEIRLLRPVLDEQAERL-QTCFSNGVIELDETPDGHKVARV 272
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
A R T R R ++ + V + RVKDHFIF++ESTGA +P+ L TEAVK+L KC+
Sbjct: 273 ANARIDTCSRNVFRF-DDLKDAVELTRVKDHFIFSVESTGAYAPDLLVTEAVKVLMAKCQ 331
Query: 376 RVITEL 381
+ EL
Sbjct: 332 MFLDEL 337
>gi|330840939|ref|XP_003292464.1| RNA polymerase III subunit [Dictyostelium purpureum]
gi|325077271|gb|EGC30994.1| RNA polymerase III subunit [Dictyostelium purpureum]
Length = 338
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/353 (43%), Positives = 210/353 (59%), Gaps = 47/353 (13%)
Query: 30 PHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDME 89
P++E +RT+V + + YSGAY S+G DNS L+ F NF++ ++ ++
Sbjct: 19 PNLENKRTKVTVTNSSVENARGTYYSGAYTSIGFDNSFSLEKFKENFKINILSEKPYELV 78
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F+++G+DA IANA RRILI+E+PTMAIEKV I NNTS++QDEVLAHRLGLIPI VDPR F
Sbjct: 79 FEMMGVDAPIANAIRRILISEVPTMAIEKVYIINNTSILQDEVLAHRLGLIPIKVDPRKF 138
Query: 150 EYMSENDTSNEKNTIVFKLHVLCER--GGPRL--TVKTNELKWLPNGSELPLETKPDSNP 205
+ N ++T++FKL V CER G + TV + L+W+P+ ++ + + +P
Sbjct: 139 NFHLPNKEYTAEDTLIFKLKVKCERDANGKIINDTVLSKHLEWVPHDDQIAMFPNEEDHP 198
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKW 264
RP+ DI I RL PGQ I+++ + K IG+ H KW
Sbjct: 199 -------------------------RPVEDDIPIMRLRPGQVIDVQLYCEKNIGREHIKW 233
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPV TA YR+LP I + E ++ E AEKLV TCP VFDIED GS V R +L
Sbjct: 234 SPVCTASYRLLPVISVDESIQGESAEKLVNTCPKKVFDIEDSGS------VVAARIQSL- 286
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
++++ R++DHFIF+IESTGAL+ LF EA+KIL +KC V
Sbjct: 287 ----------NQKLNFERIRDHFIFSIESTGALTSRELFQEAIKILIEKCNIV 329
>gi|301095581|ref|XP_002896890.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262108537|gb|EEY66589.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 339
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/310 (46%), Positives = 196/310 (63%), Gaps = 43/310 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ LT D++ FDLIG+DAAIANA RRIL+AE+PTMAIE V I NN+S+IQDEVLAHR
Sbjct: 33 KVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHR 92
Query: 137 LGLIPIIVDPRLFEYMSENDTS--NEKNTIVFKLHVLCE---------RGGPRLTVKTNE 185
LGLIP+ VDPR F+ +N+ + ++NTIVFKL V C+ +V + +
Sbjct: 93 LGLIPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCKFDPEHPKDPTKAIHSSVYSRD 152
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPG 244
L+W+P G++ E IRP+ DI +A+L PG
Sbjct: 153 LEWVPQGNQ-----------------------------EERFGSIRPVHEDILMAKLRPG 183
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
Q I LEAH KG+GK HAK+SPVATA YR++P++ L+E VE DA++LV+ C + +FDIE
Sbjct: 184 QSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEECQIGLFDIE 243
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
DIG G A V RACT+CR C+R W +++ + R DHFIF++ES G + PE L
Sbjct: 244 DIG-GVPTAVVKDQRACTMCRNCIR-EPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLL 301
Query: 365 EAVKILEDKC 374
EA+ +L +KC
Sbjct: 302 EALNVLAEKC 311
>gi|348665187|gb|EGZ05020.1| hypothetical protein PHYSODRAFT_356217 [Phytophthora sojae]
Length = 343
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/310 (46%), Positives = 196/310 (63%), Gaps = 43/310 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ LT +++ FDLIG+DAAIANA RRIL+AE+PTMAIE V I NN+S+IQDEVLAHR
Sbjct: 37 KVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHR 96
Query: 137 LGLIPIIVDPRLFEYMSENDTS--NEKNTIVFKLHVLCE---------RGGPRLTVKTNE 185
LGL+P+ VDPR F+ +N+ + ++NTIVFKL V C+ +V + +
Sbjct: 97 LGLVPLNVDPREFQAFPDNEEAEATDENTIVFKLDVTCKFDPEHPKDPTKAIHSSVYSRD 156
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPG 244
L+W+P G++ E IRP+ DI IA+L PG
Sbjct: 157 LEWVPQGNQ-----------------------------EERFGSIRPVHEDILIAKLRPG 187
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
Q I LEAH KG+GK HAK+SPVATA YR++P++ L E V+ DA+KLV+ C + +FDIE
Sbjct: 188 QSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELTEKVQGADAKKLVEECQIGLFDIE 247
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
DIG G A V RACT+CR C+R W +++S+ R DHFIF++ES G L PE L
Sbjct: 248 DIG-GVPTAVVKDQRACTMCRNCIR-EPGWNEKISLGRQSDHFIFSVESVGMLKPEELLL 305
Query: 365 EAVKILEDKC 374
EA+ +L +KC
Sbjct: 306 EALNVLAEKC 315
>gi|237839019|ref|XP_002368807.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|211966471|gb|EEB01667.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|221502105|gb|EEE27849.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii VEG]
Length = 346
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/349 (43%), Positives = 201/349 (57%), Gaps = 39/349 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
I R+ C + P HT + Y+GA+ +S VD+ +D FC ++ + ++ + + F
Sbjct: 14 IPLHSNRLVCAAEGPRHTNSGGYAGAFLSSSYVDDVFSIDKFCERTSLKFLSVSPERVVF 73
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
+L G+DAAI NA RRILI+E+PT+AIE V I NT V+QDEVLAHRLGLIP IVDP
Sbjct: 74 ELKGVDAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDEVLAHRLGLIPFIVDPTALN 133
Query: 151 YMSENDTSNEKNTIVFKLHVLC--ERGGPR---LTVKTNELKWLPNGSELPLETKPDSNP 205
Y N ++N + LHV C + GP L V +KW P +P
Sbjct: 134 YRQPNQEVTDENALRVSLHVKCTEQSLGPHQTSLPVYAKHIKWEP------------MSP 181
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKW 264
S K F+ NP R + DI I +L PGQEIEL+A+ KG+GKTHAKW
Sbjct: 182 SQK--------------EAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKW 227
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPV TA YR+ PEIV E ++ EDA L CP+ VFDIED A PR CT C
Sbjct: 228 SPVCTAVYRLEPEIVFKESIQGEDASDLCSLCPMGVFDIEDTTG---EAYARYPRNCTTC 284
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
R C+ E + K + +R++KDHFIF+IESTG++ LF A++IL++K
Sbjct: 285 RACI---ERFPKEIELRKIKDHFIFSIESTGSVPAPLLFKMAIEILKEK 330
>gi|301092813|ref|XP_002997258.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262111439|gb|EEY69491.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 343
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/348 (43%), Positives = 209/348 (60%), Gaps = 52/348 (14%)
Query: 39 VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAA 98
V+ DAP H +V +Y+ ++ +V++ LT D++ FDLIG+DAA
Sbjct: 8 VRVGQDAP-HQPDVESESSYSF--------VEQSKRQVKVKIQSLTDDEIVFDLIGVDAA 58
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS 158
IANA RRIL+AE+PTMAIE V I NN+S+IQDEVLAHRLGLIP+ VDPR F+ +N+ +
Sbjct: 59 IANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLNVDPREFQAFPDNEEA 118
Query: 159 --NEKNTIVFKLHVLCE---------RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++NTIVFKL V C+ +V + +L+W+P G++
Sbjct: 119 EATDENTIVFKLDVTCKFDPEHPKDPTKAIHSSVYSRDLEWVPQGNQ------------- 165
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
E IRP+ DI +A+L PGQ I LEAH KG+GK HAK+SP
Sbjct: 166 ----------------EERFGSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSP 209
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR++P++ L+E VE DA++LV+ C + +FDIEDIG G A V RACT+CR
Sbjct: 210 VATASYRLMPKVELMEKVEGTDAKRLVEECHIGLFDIEDIG-GVPTAVVKDQRACTMCRN 268
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
C+R W +++ + R DHFIF++ES G + PE L EA+ +L +KC
Sbjct: 269 CIR-EPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKC 315
>gi|149069364|gb|EDM18805.1| RNA polymerase 1-1, isoform CRA_b [Rattus norvegicus]
Length = 291
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/295 (49%), Positives = 194/295 (65%), Gaps = 16/295 (5%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPR
Sbjct: 6 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPR 65
Query: 148 LFEYMSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
LFEY + + E +T+ F+L V C R P +++ P E +
Sbjct: 66 LFEYRNPGEEEGTEIDTLQFRLQVRCTR-NPSAAKDSSD----------PNELYVNHKVY 114
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
++ T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SP
Sbjct: 115 TRHMTWVPLGNQADVFPEGTVRPVHD--DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSP 172
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP+I LLE VE E AE+L + V ++++ GKK A VA R T RE
Sbjct: 173 VATASYRLLPDITLLEPVEGEAAEELSQCFSPGVIAVQEV-QGKKVARVANARLDTFSRE 231
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
R E+ +K V + RV+DH+IF++ESTG L P+ L +EA+KIL KC R + EL
Sbjct: 232 IFR-HEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 285
>gi|225707230|gb|ACO09461.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Osmerus mordax]
Length = 351
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 208/340 (61%), Gaps = 24/340 (7%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ + F NFR++++ + + MEFD++GIDAAIANAFRRI
Sbjct: 25 VHTTD--YPGNYP--GYDDAWNMQKFQKNFRIDIVEMDETTMEFDMVGIDAAIANAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS-----ENDTSNEK 161
++AE+PTMA+EKV I NNTS+IQDE+LAHRLGLIPI DPRLFEY + + E
Sbjct: 81 MLAEVPTMAVEKVYIYNNTSIIQDEILAHRLGLIPIKADPRLFEYRNIGEEGGEEEGTEI 140
Query: 162 NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL 221
+TI +L + C R PR P S P E + SK + + D+
Sbjct: 141 DTIQLQLKIKCTR-NPR----------APKDSSDPRELYLNHMVYSKDMKWVPIGNQADV 189
Query: 222 LPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLL 281
+ + P+ DI IA+L PGQE+++ VKGIGK HAK+SPVATA YR+LPEI L+
Sbjct: 190 FADANIGPVHG--DILIAQLRPGQELDVVMSCVKGIGKDHAKFSPVATASYRLLPEITLM 247
Query: 282 EDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIR 341
E VE E AE+L V ++E+ +GK A V R T RE LR ++ + V +
Sbjct: 248 ETVEGEKAERLKSCFSPGVIELENC-NGKVIAKVVNSRPDTCSREVLR-HDDLKNLVKLA 305
Query: 342 RVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
RV+DHFIF++ESTG L P+ + TEA+K+L KC R + EL
Sbjct: 306 RVRDHFIFSVESTGILPPDVVVTEAIKVLMSKCRRFLNEL 345
>gi|403361811|gb|EJY80614.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Oxytricha
trifallax]
Length = 405
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 145/328 (44%), Positives = 201/328 (61%), Gaps = 34/328 (10%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
+ + L F N +E+++L +++ FDLIG++ +ANA RRILIAE+PTMAIEKV + N
Sbjct: 70 DKVSLKDFIENSNIEILKLDDEEIIFDLIGVEPPLANALRRILIAEIPTMAIEKVNMWQN 129
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMS----------ENDTSNEKNTIVFKLHVLCER 174
TS+I DE LAHR+GLIPI DPR FE+ + DT E +++ FKLHV C +
Sbjct: 130 TSIIPDENLAHRMGLIPIKADPRQFEFHEKSTLENDQGEQQDTYTEDDSLRFKLHVRCTK 189
Query: 175 GGPRLTVKTN----ELKWLPNGSELPLETK--PDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
PR V N E K N + L + K P N + K F +
Sbjct: 190 KDPRAPVIINNTVDEEKLYNNANVLSGQLKWIPVGNQAQK----------------FGVD 233
Query: 229 PIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
I+P+ D I IA+L PGQEIE+E KGIGKTHAKWSPV+TA+YR++P+I + +D+ +E
Sbjct: 234 GIKPLFDDILIAKLRPGQEIEMELICEKGIGKTHAKWSPVSTAFYRLVPDIKITQDIMNE 293
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
+A +L CP V+DIED+G KRA V R CT CREC+R E++ +R+ + ++KD F
Sbjct: 294 EAVELKNLCPTGVYDIEDLGKKGKRAIVGDVRKCTTCRECIR-PEKFRERIDLGKIKDRF 352
Query: 348 IFTIESTGALSPETLFTEAVKILEDKCE 375
F +ES G L PE L EA+K L++K +
Sbjct: 353 EFHVESVGILPPEVLVIEALKKLKEKAQ 380
>gi|401400700|ref|XP_003880837.1| rna polymerase II, related [Neospora caninum Liverpool]
gi|325115249|emb|CBZ50804.1| rna polymerase II, related [Neospora caninum Liverpool]
Length = 346
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 201/349 (57%), Gaps = 39/349 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAY-ASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
I R+ C + P HT + Y+GA+ +S VD+ +D FC ++ + ++ + + F
Sbjct: 14 IPLNSNRLVCAAEGPRHTSSGGYAGAFLSSSYVDDVFSIDKFCERTFIKFLSVSPERVVF 73
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
+L G+DAAI NA RRILI+E+PT+AIE V I NT V+QDEVLAHRLGLIP +VDP
Sbjct: 74 ELKGVDAAIPNALRRILISEVPTIAIETVQIWQNTGVVQDEVLAHRLGLIPFVVDPTALN 133
Query: 151 YMSENDTSNEKNTIVFKLHVLC--ERGGPR---LTVKTNELKWLPNGSELPLETKPDSNP 205
Y N ++N + LHV C + GP L V ++KW P +P
Sbjct: 134 YRQPNQEFTDENALRVSLHVKCTEQSLGPHQTSLPVYARDIKWEP------------MSP 181
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKW 264
S K F+ NP R + DI I +L PGQEIEL+A+ KG+GKTHAKW
Sbjct: 182 SQK--------------EAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKW 227
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPV TA YR+ PEIV E ++ E+A L CP+ VFD+ED A PR CT C
Sbjct: 228 SPVCTAVYRLEPEIVFKEPIQGEEASDLCSLCPMGVFDVEDTTG---EAYARYPRNCTTC 284
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
R C+ E + + +R++KDHFIF+IESTG++ LF A++IL++K
Sbjct: 285 RACI---ERFPNGIELRKIKDHFIFSIESTGSVPAPLLFKMAIEILKEK 330
>gi|405978280|gb|EKC42685.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Crassostrea
gigas]
Length = 472
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/353 (43%), Positives = 204/353 (57%), Gaps = 44/353 (12%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RTRV N + + + G Y D++ F NFR+++I++ D++EFD++GI
Sbjct: 8 RTRVTLNEHGVDNVHSTDFPGEYPDF--DDAWDFKKFKKNFRIDMIKMNDDELEFDMVGI 65
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DAAIANAFRRIL+AE+PTMAIEKV I NNTS+IQDEVLAHRLGLIPI DPRLFEY SE
Sbjct: 66 DAAIANAFRRILLAEVPTMAIEKVHIYNNTSIIQDEVLAHRLGLIPIKADPRLFEYKSEG 125
Query: 156 DTSNEKNTIVFKLHVLCERGG------------PRLTVKTNELKWLPNGSELPLETKPDS 203
+ + ++TI+F+L V C + V T LKW+P
Sbjct: 126 EDFSPEDTIIFQLKVKCTKNSQAKDTTDPDEMYKDHKVTTKHLKWIP------------- 172
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHA 262
QD + F +RP+ DI IA+L PGQEI++ KGIGK HA
Sbjct: 173 ------------MKGQDTI--FKEGDLRPVNDDILIAKLRPGQEIDIRVFCNKGIGKDHA 218
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
K+SPVATA YR+LPEI L V AEKL ++C + D +G K A VA R T
Sbjct: 219 KFSPVATASYRLLPEIYLKSPVTGALAEKL-QSCFSPGVIVIDTENGNKVARVANARKDT 277
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
RE R + + V +++V+DHFIF++ESTG L P+ L EA+K+L KC+
Sbjct: 278 CSREVFR-HDNLKDLVELKKVRDHFIFSVESTGILPPDILVEEAIKVLMKKCQ 329
>gi|196010261|ref|XP_002114995.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
gi|190582378|gb|EDV22451.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
Length = 349
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 150/351 (42%), Positives = 214/351 (60%), Gaps = 22/351 (6%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RTRVQ +T V + GA+ G D++ L+ F NF++E+I++ ++MEFD+IGI
Sbjct: 9 RTRVQLEEYQVKNTHTVDFPGAF--HGYDDAWSLNSFRKNFKIEIIKVDNEEMEFDMIGI 66
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DA+IANA+RRI+++E+P MAIEKV+I NNTS+IQDEVLAHRLGLIPI DP+LF+ +
Sbjct: 67 DASIANAYRRIMLSEVPAMAIEKVVIHNNTSIIQDEVLAHRLGLIPIAADPKLFDNFNPG 126
Query: 156 DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSF 215
DT KN+I F L + C R + T+ P E +S ++K
Sbjct: 127 DTPTNKNSITFTLQIKCIRNRSAHSDATD-----------PEELYINSKVTTKDLKLKYN 175
Query: 216 SSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR- 273
+ +P N IRP+ DI IA+L PGQEI+LE VKG G HAK+SPV Y
Sbjct: 176 EDQDNAIP---NKDIRPVHEDILIAKLRPGQEIDLEMICVKGTGADHAKFSPVGNNLYLL 232
Query: 274 --MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
++PEI+L + V + A++L K P V I++I G K A + +PR T R+ LR
Sbjct: 233 VWLMPEIILKQAVTGKRAKRLAKCFPEGVIGIKEI-KGIKTAYIDKPRLDTCSRQVLR-D 290
Query: 332 EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
E ++ V + +++DHFIF IESTG++ P +F E+VKIL KC + + E++
Sbjct: 291 PELKEHVILNKIRDHFIFCIESTGSIPPADIFRESVKILRQKCHKFLEEVN 341
>gi|328766566|gb|EGF76620.1| hypothetical protein BATDEDRAFT_21078 [Batrachochytrium
dendrobatidis JAM81]
Length = 342
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/341 (45%), Positives = 201/341 (58%), Gaps = 20/341 (5%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RTRV D + + + + G+D S L+ F F + + + KD MEFDLIG+
Sbjct: 2 RTRVVLTEDFVANVSGMDFPHTFP--GIDLSWNLEKFKEKFNIVIDYIGKDSMEFDLIGL 59
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SE 154
DA+I+NAFRRILI E+ TMAIE V I NNT V+ DEVLA RLGLIPI DPRLF++
Sbjct: 60 DASISNAFRRILIGEVATMAIENVYIMNNTGVMHDEVLAQRLGLIPINSDPRLFDFREGS 119
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTS 214
+D + NT+VF+L++ C R + N P DS+ SK +
Sbjct: 120 DDPPTDLNTLVFRLNIKCTRNPHASASEIN-----------PSNKYIDSDVLSK---HLI 165
Query: 215 FSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
+ D + +F ++PIRP DI I +L PGQEIE E H KGIGK HAKWSPVATA YR
Sbjct: 166 WEPQGDQVEKFKDSPIRPYYDDILITKLRPGQEIEAELHCQKGIGKEHAKWSPVATASYR 225
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEE 333
+LP+I +L+ + +DAEK P I +G A +A PR T RE LR E
Sbjct: 226 LLPDIQILKPITGKDAEKFKNCFPEGTVKIVQ-KNGVGHAEIANPRKDTASREVLRHAEF 284
Query: 334 WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
+K V + RV+DHFIF+IESTGAL P+ LF EA +IL +KC
Sbjct: 285 LDK-VRLTRVRDHFIFSIESTGALPPQLLFQEASQILIEKC 324
>gi|344253232|gb|EGW09336.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Cricetulus
griseus]
Length = 282
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 190/294 (64%), Gaps = 22/294 (7%)
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY
Sbjct: 1 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 60
Query: 152 MSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG---SELPLETKPDSNPSS 207
+ + E +T+ F+L V C + PN S P E + +
Sbjct: 61 RNPGEEEGTEIDTLQFRLQVRCTKN--------------PNAAKDSSDPNELYVNHKVYT 106
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+ T+ + D+ PE + P+ DI IA+L PGQEI+L H VKGIGK HAK+SPV
Sbjct: 107 RHMTWVPLGNQADVFPEGTIRPVHD--DILIAQLRPGQEIDLVMHCVKGIGKDHAKFSPV 164
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP+I LLE VE E AE+L + V +++++ G+K A VA R T RE
Sbjct: 165 ATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGQKLARVANARLDTFSREI 223
Query: 328 LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
R E+ +K V + RV+DH+IF++ESTG L P+ L +EA+KIL KC R + EL
Sbjct: 224 FR-NEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 276
>gi|118088012|ref|XP_001234462.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Gallus gallus]
Length = 300
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 196/335 (58%), Gaps = 58/335 (17%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y G D++ F FRV+V+R +EFD++GIDAAIANAFRRI
Sbjct: 18 VHTTD--FPGNYP--GYDDAWDQRRFEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRI 73
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVF 166
L+AE+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++
Sbjct: 74 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQ------------ 121
Query: 167 KLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
V + + W+P G++ DL P+
Sbjct: 122 --------------VYSKHMTWVPLGNQ------------------------TDLFPDAD 143
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I LL+ VED
Sbjct: 144 FRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVED 201
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
E AE L K V +I++I GKK A VA R T RE R E + V + RV++H
Sbjct: 202 EAAETLQKCFSPGVIEIQNI-KGKKVARVANARLDTFSREVFR-HEGLKNLVRLARVRNH 259
Query: 347 FIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+IF++ESTG L P+ L TEA+KIL KC+R + EL
Sbjct: 260 YIFSVESTGILPPDVLVTEAIKILMGKCQRFLNEL 294
>gi|19113623|ref|NP_596831.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe 972h-]
gi|13124507|sp|O94616.1|RPAC1_SCHPO RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=DNA-directed RNA polymerases I and III 40 kDa
polypeptide; Short=AC40; AltName: Full=RPC39
gi|5531859|gb|AAD44503.1|AF082512_1 RNA polymerase subunit Rpc40 [Schizosaccharomyces pombe]
gi|4490662|emb|CAB38687.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe]
gi|4760696|dbj|BAA77385.1| RPA42 [Schizosaccharomyces pombe]
Length = 348
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 212/369 (57%), Gaps = 49/369 (13%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++ RT + D +V + G Y DN LD F N +V + L ++ M F+
Sbjct: 4 VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 61
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ GIDA+IANAFRRILIAE+PT+A E V I NNTS+IQDEVL+HR+GL+PI DP +F++
Sbjct: 62 ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 121
Query: 152 M-----SENDTSNEKNTIVFKLHVLC---------ERGGPRLTVK----TNELKWLPNGS 193
+ T + +T+VF L+ C E+ RL V + +L W P G
Sbjct: 122 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGR 181
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAH 252
+ F++NPIR + DI +A+L PGQEI+LEAH
Sbjct: 182 Q---------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAH 214
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A+ GIG+ HAK+SPVATA YR+LP I +L +E EDA K K P V ++E+ GKK+
Sbjct: 215 AILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQ 274
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
A VA R T+ RECLR E+ +V + RV+DH++F++ESTG + P+ LF +++ +L+
Sbjct: 275 ARVADVRKDTVSRECLR-HPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKS 333
Query: 373 KCERVITEL 381
KC V + L
Sbjct: 334 KCLAVKSSL 342
>gi|321465930|gb|EFX76928.1| hypothetical protein DAPPUDRAFT_213644 [Daphnia pulex]
Length = 353
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 199/328 (60%), Gaps = 29/328 (8%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D+S + F ++ ++R+ ++EFDLIG+D AI NAFRRIL++++PTMA +KV +
Sbjct: 43 GFDDSWSFEKFKKRLKINIVRMENMEIEFDLIGVDPAIPNAFRRILLSDIPTMAFDKVFM 102
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE-KNTIVFKLHVLCERGGPRLT 180
NNTS+IQDEVLAHRLGLIP+ DPRLFE+ +E+D + ++T+ F+L V C
Sbjct: 103 FNNTSIIQDEVLAHRLGLIPLKADPRLFEFRAEDDDAGTPEDTLEFELKVKC-------- 154
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE------FSNNPIRPML 234
W P TK +NP R + +S +P F+ + + P+
Sbjct: 155 ------SWNPQ------RTKDHTNPEHLYRDFRVLTSHLKWMPLGGQKDIFTPDAVGPVD 202
Query: 235 D-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
D I IA++ PG E++++ HA+KG G+ HAK+SPVATA+YR+LP++ LL++VE E A++L
Sbjct: 203 DKILIAKMRPGHELDIKLHAMKGTGREHAKFSPVATAFYRLLPQVKLLKEVEGEAAQRLQ 262
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES 353
K V D+ D G KK A V R R R + E V + R +DHFIF IES
Sbjct: 263 KCFSPGVIDLVDSGE-KKVAKVNDARYDICSRNVFRHEDLKEDTVKLTRARDHFIFYIES 321
Query: 354 TGALSPETLFTEAVKILEDKCERVITEL 381
TGAL+PE LFTEA KIL KC + EL
Sbjct: 322 TGALAPEVLFTEAAKILSQKCRVFLDEL 349
>gi|1914859|emb|CAA71570.1| homologous to 40kD subunit of RNA-polymerase I and III [Cricetulus
griseus]
Length = 347
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 210/365 (57%), Gaps = 49/365 (13%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RT + D +V + G Y DN LD F N +V + L ++ M F++ GI
Sbjct: 7 RTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFEISGI 64
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM--- 152
DA+IANAFRRILIAE+PT+A E V I NNTS+IQDEVL+HR+GL+PI DP +F++
Sbjct: 65 DASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHP 124
Query: 153 --SENDTSNEKNTIVFKLHVLC---------ERGGPRLTVK----TNELKWLPNGSELPL 197
+ T + +T+VF L+ C E+ RL V + +L W P G +
Sbjct: 125 LPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQ--- 181
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKG 256
F++NPIR + DI +A+L PGQEI+LEAHA+ G
Sbjct: 182 ------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILG 217
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
IG+ HAK+SPVATA YR+LP I +L +E EDA K K P V ++E+ GKK+A VA
Sbjct: 218 IGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARVA 277
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
R T+ RECLR E+ +V + RV+DH++F++ESTG + P+ LF +++ +L+ KC
Sbjct: 278 DVRKDTVSRECLR-HPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKCLA 336
Query: 377 VITEL 381
V + L
Sbjct: 337 VKSSL 341
>gi|298708063|emb|CBJ30416.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 361
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/309 (46%), Positives = 199/309 (64%), Gaps = 30/309 (9%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+++ FDL+G+DA+IANA RRIL+AE+ T+AIE V + N+S+I DE+LAHRLGLIPI+ +
Sbjct: 56 NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMAN 115
Query: 146 PRLFEYMSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
PR+FE++ E D E NT VFKL E+K + +++P
Sbjct: 116 PRMFEFVGEEGGEQDEPTEFNTCVFKL----------------EVKNPADPADMPDPMPT 159
Query: 202 DSNPSSKPR-TYTSFSSSQDLLPEF-------SNNPIRPMLD-ITIARLGPGQEIELEAH 252
++ ++ PR T FS + + P +RP+ D I IA+L PGQEI E H
Sbjct: 160 GTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMH 219
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
KGIGK HAK+SPVATA YR+LP + L E+VE ++AE+LV CP+NVFDIED+G KR
Sbjct: 220 CRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKR 279
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
A VA+PR CT+CREC+R W +VS+ RV DHFIF IES G L P+ L +++++L
Sbjct: 280 AKVARPRDCTMCRECIR-EPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQ 338
Query: 373 KCERVITEL 381
KC+ +I E+
Sbjct: 339 KCDSMIAEV 347
>gi|3335138|gb|AAC39892.1| RNA polymerase I 40kD subunit [Homo sapiens]
gi|119624609|gb|EAX04204.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_a [Homo
sapiens]
Length = 342
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|332824146|ref|XP_003311364.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Pan troglodytes]
Length = 342
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 196/303 (64%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWIPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 247 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFR-NEKLKKVVRLARVRD 304
Query: 346 HFI 348
H+I
Sbjct: 305 HYI 307
>gi|412991198|emb|CCO16043.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bathycoccus
prasinos]
Length = 438
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/412 (37%), Positives = 224/412 (54%), Gaps = 58/412 (14%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGV-----DNSLQLDHFCNNFRVEV 80
+K+ H+E Q+ V HT+ Y AY+ +++ L+ F NF ++V
Sbjct: 28 EKIASHLEMQKKFVSVGFAENKHTQERAYFNAYSGGAAATEEDEDAFSLEQFRKNFTIKV 87
Query: 81 IRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
+ +EF++ GI AA ANAFRRI+I+E+P+MAIE+V NTSVI DE+ AHRLG
Sbjct: 88 TENNESTHTLEFEMEGISAAFANAFRRIIISEVPSMAIERVYFRQNTSVIADEIFAHRLG 147
Query: 139 LIPIIVDPRLFEYMSEN---DTSNEKNTIVFKLHVLCER----GGPRL-------TVKTN 184
L+PI+ DP FE ++ D NEKNTIVFKLHV C++ G L V +
Sbjct: 148 LVPILADPNEFESFDKDTHTDLLNEKNTIVFKLHVKCQKERDASGNILPDSILHEKVYSR 207
Query: 185 ELKWLPNGSELPLETKPDSNP---------------------------SSKPRTYTSFSS 217
+L WLP GSEL E++ K +T+++FS+
Sbjct: 208 DLVWLPKGSELEDESQGGEGADDDDDDDDDDDEDDDDMSDDDEKKKRKKKKIKTFSNFST 267
Query: 218 SQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
SQ+ +F I+ + DI +A+L PGQEIELEAH +K IG HAK+SPV T WYR++P
Sbjct: 268 SQE--TKFGKEGIKTVHDDILLAKLVPGQEIELEAHCMKSIGADHAKFSPVGTCWYRLVP 325
Query: 277 EIVLLEDVEDEDAEKLVKTC--PV-NVFDIEDIGSGKK-RATVAQPRACTLCRECLR--C 330
+ + + DA+ + C P+ N E GSG+K + R C LC E +R
Sbjct: 326 TVYFKKPIVGADAKVFMSECSDPIPNHKCFELKGSGEKAEVKIKSIRGCDLCLERIRELS 385
Query: 331 GEE-WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
GE W+ ++++ + +DH+IFTIES GA P+ +F EAV IL+ KC + L
Sbjct: 386 GESGWDSKIAVLKKRDHYIFTIESVGARKPDVIFKEAVSILKSKCHSALGRL 437
>gi|355712707|gb|AES04439.1| polymerase I polypeptide C, 30kDa [Mustela putorius furo]
Length = 305
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/302 (47%), Positives = 195/302 (64%), Gaps = 20/302 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ + F NFRV+V+ L ++ +EFD++GIDAAIANAFRRI
Sbjct: 23 VHTTD--FPGNYS--GYDDAWDQNRFEKNFRVDVVHLDENSLEFDMVGIDAAIANAFRRI 78
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 79 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 138
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ T+ + DL PE
Sbjct: 139 FRLQVRCTR-NPHAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADLFPEG 187
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 188 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 245
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V +++++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 246 GEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREVFR-NEKLKKLVRLARVRD 303
Query: 346 HF 347
H+
Sbjct: 304 HY 305
>gi|146164033|ref|XP_001012875.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila]
gi|146145882|gb|EAR92630.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila SB210]
Length = 336
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 206/367 (56%), Gaps = 37/367 (10%)
Query: 21 LPDVPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEV 80
+ + QK+ +I F +Q H++ + YS A+ S + F N ++EV
Sbjct: 1 MSNKTQKMKKNIVFTNEGIQ-------HSQEMNYSAAFTS-----EEDFNTFKENIKIEV 48
Query: 81 IRL--TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
IR ++EFDL+G+DA IANA RRI+IAE+PTMAI KV I NTS+I DEVLAHRLG
Sbjct: 49 IRYDNKNKELEFDLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLG 108
Query: 139 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
LIPI DPRLFE E D NEKN++ F L + C + + N SE LE
Sbjct: 109 LIPIYADPRLFEEKQEEDEYNEKNSLKFTLKIKCSKK-----------EQYKNYSEADLE 157
Query: 199 TKPDSNPSSKPRTYTS---FSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
Y+ + S + +F NPIR + D I +A+L QEI E
Sbjct: 158 NLTPETYLENAIVYSGDFKWVSQGEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQ 217
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KGIGKTHAKWSPV TA+YR++PEI + D+ A++L + CP+ V+D+++ +A
Sbjct: 218 KGIGKTHAKWSPVCTAYYRLMPEININSDITGAKAQELKERCPLKVYDVQN-----NKAI 272
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
V+ RACT+CREC+R EE+ ++ + + K+HF I+S G P + EA++IL+ K
Sbjct: 273 VSNERACTMCRECIREDEEFNSKIELAKKKEHF---IQSVGIYEPHEIVKEAIQILKQKA 329
Query: 375 ERVITEL 381
+ L
Sbjct: 330 SSFMLNL 336
>gi|417409648|gb|JAA51322.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 316
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/303 (46%), Positives = 192/303 (63%), Gaps = 20/303 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+VI + ++ +EFD++GIDAAIANAFRR+
Sbjct: 25 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVIHMDENTLEFDMVGIDAAIANAFRRV 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 81 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R S P E + ++ T+ + DL P+
Sbjct: 141 FRLQVRCTRN-----------SHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPDG 189
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 190 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 247
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E AE+L + V ++ ++ GKK A VA PR T RE R E+ +K V + RV+D
Sbjct: 248 GEAAEELRRCFSPGVIEVHEV-QGKKVARVANPRLDTFSREVFR-NEKLKKVVRLARVRD 305
Query: 346 HFI 348
H+I
Sbjct: 306 HYI 308
>gi|449662625|ref|XP_002166070.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Hydra magnipapillata]
Length = 354
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 216/378 (57%), Gaps = 61/378 (16%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE R +V+ A I+T + G+Y G D+S F F+++VI+L +++MEFD
Sbjct: 5 IEDIRNKVKLEEFAVINTAGSAFPGSYT--GYDDSWNFKKFKKKFKIDVIKLNQNEMEFD 62
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+IGIDA+IANAFRRILIAE+PTMAIEKV I NNT+++QDE+LAHRLGLIPI+ DPR F +
Sbjct: 63 MIGIDASIANAFRRILIAEVPTMAIEKVFIFNNTTIVQDEILAHRLGLIPILADPREFNF 122
Query: 152 ------------MSENDTSNEKNTIVFKLHVLCERGGPRLT--------------VKTNE 185
E +E + +VF+L + C + P+ + V T
Sbjct: 123 PPAKLEDESKLTDEERLAVDEHHHLVFELKIKCSK-NPKASSDATDPDVLYLNNKVMTKH 181
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPG 244
+KW+P G + +FS N +RP+ DI IA+L PG
Sbjct: 182 MKWIPIGRQ---------------------------AEKFSTNIVRPVFDDILIAKLRPG 214
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV-FDI 303
QE+++ H VKGIGK HAK+SPVATA YR+L EI LL V E AE L K V DI
Sbjct: 215 QELDIRMHCVKGIGKDHAKFSPVATASYRLLREITLLTPVVGELAETLAKCFFKGVKKDI 274
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
E+ +G RA V PR + RE R E +K V + +V+DHFI+++ESTGAL P+ L
Sbjct: 275 EE--NGITRAVVDNPRKDSGMREIYR-NEILKKIVKLEKVRDHFIYSVESTGALPPDVLV 331
Query: 364 TEAVKILEDKCERVITEL 381
EA+KIL KC I +L
Sbjct: 332 EEAIKILHAKCRLYIQQL 349
>gi|340375977|ref|XP_003386510.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Amphimedon queenslandica]
Length = 346
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 202/337 (59%), Gaps = 28/337 (8%)
Query: 57 AYASMGVDNSLQL----DHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELP 112
A S+ DN L D F FRV+++ L+ +EFD+IG+D IANA RRIL+ E+P
Sbjct: 21 AEGSLSNDNEESLFWNFDKFVEKFRVDIVSLSYSSVEFDMIGLDPPIANAIRRILLVEVP 80
Query: 113 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM---SENDTSNEKNT----IV 165
TMAIEKV + NNTSVIQD VLAHR+GLIP+ DPR F ++ +E+ E+ T +
Sbjct: 81 TMAIEKVHVINNTSVIQDGVLAHRMGLIPLFADPRKFSFLPPRTEDAPFPEQLTPQHMLE 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
FKL V C R N P+ SE P E +S + L F
Sbjct: 141 FKLKVKCSRN-------VNA----PSDSEDPNELYISHKVTSGDMKWVPIEDQSQL---F 186
Query: 226 SNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
S + IRP+ DI IA+L PGQEI+L VKGIGK HAK+SPVATA YR+LPEI L + V
Sbjct: 187 SVHDIRPVDKDILIAKLRPGQEIDLRLICVKGIGKDHAKFSPVATASYRLLPEITLTKPV 246
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
AEKL V ++D+ SG+KRA V+ PR T RE LR E+ + V + RVK
Sbjct: 247 VGPAAEKLASCFSKGVIRVQDV-SGQKRAVVSNPRRDTCSREVLR-HEDLKDSVQLSRVK 304
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
DHFIF++ESTGALS +TL EA++++ +KC I+EL
Sbjct: 305 DHFIFSVESTGALSADTLVLEAIRVMIEKCNHFISEL 341
>gi|393234912|gb|EJD42471.1| hypothetical protein AURDEDRAFT_115078 [Auricularia delicata
TFB-10046 SS5]
Length = 355
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/344 (41%), Positives = 202/344 (58%), Gaps = 20/344 (5%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R +V+ + N + G Y G D++ + F + +VE+ RL+ +EFDL+G
Sbjct: 9 KRRQVKVGTERAYDVANTEFPGNYP--GEDHAWNIKKFRKDLKVEIQRLSHRSIEFDLVG 66
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANAFRRILIAE+PT+AIE + NNTSVI DEVLA RLGL+P+ +DP L E+
Sbjct: 67 VDASIANAFRRILIAEVPTVAIEHAYVWNNTSVIHDEVLAQRLGLVPLDIDPALMEF--H 124
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTS 214
S ++NT+VF+L V CER R +E P + DSN SK T+
Sbjct: 125 EGVSTDRNTLVFRLQVTCER---RKGAHKDETD--------PEKLYKDSNVYSKHLTWVP 173
Query: 215 FSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
F+++P RP +I +A+L PGQEIE+E HA+KG G HAKWSPV TA YR
Sbjct: 174 QGEQATF---FADHPPRPCNENILLAKLRPGQEIEVELHAIKGRGNEHAKWSPVGTASYR 230
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEE 333
+LP I + + + +K P V ++ G+K A VA PR T+ RE LR E
Sbjct: 231 LLPHITIHKPIPSHLVDKFAGCFPPGVIGVKTNARGEKEAIVADPRRDTVSREVLR-HPE 289
Query: 334 WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+E VS+ R++D F+F IE+ A +PE LFTE+V + +K +R+
Sbjct: 290 FEGMVSLSRIRDFFLFKIETESAYAPERLFTESVAVFREKVKRL 333
>gi|449541898|gb|EMD32879.1| hypothetical protein CERSUDRAFT_160889 [Ceriporiopsis subvermispora
B]
Length = 364
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/355 (42%), Positives = 207/355 (58%), Gaps = 45/355 (12%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R V NL+ + N Y G Y D+S L F N ++ V RL++ +EFDL+G+
Sbjct: 16 RRHVGVNLERVTNVTNTEYPGHYPDE--DHSWDLAKFKQNLQLSVKRLSQRSIEFDLVGV 73
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DA+IANAFRRILIAE+PTMAIE V + NNTSVIQDEVLA RLGLIP+ VDPR+FE+ ++
Sbjct: 74 DASIANAFRRILIAEVPTMAIEHVYVWNNTSVIQDEVLAQRLGLIPLDVDPRMFEFRTQT 133
Query: 156 DTSNEKNTIVFKLHVLCER--GGPRLT--------VKTNELKWLPNG-SELPLETKPDSN 204
DT ++NT+VF+L+V CER PR + V++ +L+W+P G E+ KP +
Sbjct: 134 DTPTDRNTLVFQLNVTCERMKNAPRGSTSQHKHEYVRSEDLEWVPQGEQEVVFADKPPA- 192
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
P++K +I +A+L PGQEI +E HA+KG+GK HAKW
Sbjct: 193 PTNK--------------------------EIVLAKLAPGQEINVELHAIKGVGKEHAKW 226
Query: 265 SPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
+PVATA YR+ P ++L + + A+K K V +E GK R +
Sbjct: 227 NPVATASYRLHPLVLLNPSKPIPPHLADKFAKCFSPGVVRVE--SGGKVSIDERNLRKES 284
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+ RE LR E+E V ++R++D FIFTIES PE LF E+VK++ K V
Sbjct: 285 MSREVLR-HPEFEGCVELKRIRDWFIFTIESESHYKPEELFLESVKVMRAKIASV 338
>gi|198427484|ref|XP_002120101.1| PREDICTED: similar to RNA polymerase 1-1 [Ciona intestinalis]
Length = 345
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/361 (39%), Positives = 212/361 (58%), Gaps = 48/361 (13%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R+ ++ N +T Y +YA G +++ F +NF + VI L D M+FD++G+
Sbjct: 8 RSNIRLNEHGIANTHTTTYPRSYA--GFNDAWDFQKFADNFCINVIELGPDSMQFDMLGV 65
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DAAIANAFRRILIAE+PTMAIEKV I NNT+VIQDEVLAHRLGLIP+ D +LFEY +
Sbjct: 66 DAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRLGLIPLTADAKLFEYRQGD 125
Query: 156 DTSNE-KNTIVFKLHVLCERG--GPRLT-----------VKTNELKWLPNGSELPLETKP 201
D ++T+ F+L++ C + P+ T V + ++KW+P G++
Sbjct: 126 DADGTPEDTLEFELNIKCTKNLSAPKDTTDLDVLYKHHKVYSKDIKWIPLGNQ------- 178
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKT 260
+DLL ++P+ D I +A+L PG ++++ HAVKG+G+
Sbjct: 179 -----------------KDLLT------VKPVYDDILVAKLRPGHILDVKLHAVKGVGQD 215
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAK+SPVATA YR+LP+I LL+ + + DAE L + V ++ +G + A V R
Sbjct: 216 HAKFSPVATASYRLLPQIRLLDQILNSDAEDLQRCFAPGVIEVYRNKNGDQEARVVDARK 275
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
T RE LR + RV + +V+DHFI++IES+ A++P L A+KI+ KC ++ E
Sbjct: 276 DTCSREVLR-HPHLKDRVELSKVRDHFIYSIESSVAITPNELMCRAIKIMMGKCRTLLQE 334
Query: 381 L 381
L
Sbjct: 335 L 335
>gi|443702676|gb|ELU00597.1| hypothetical protein CAPTEDRAFT_171865 [Capitella teleta]
Length = 349
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 146/342 (42%), Positives = 201/342 (58%), Gaps = 45/342 (13%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
Y GA+A G D++ + F F + V+ LT D+EFD++G+D ++ANAFRRIL++E+PT
Sbjct: 25 YPGAWA--GYDDAWDMQKFIKKFFINVVSLTDTDIEFDMVGLDCSLANAFRRILLSEVPT 82
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE-NDTSNEKNTIVFKLHVLC 172
MAI+KV I NNTS+IQDEV AHRLGLIPI DPR+FEY SE N+ ++T+VF+L V C
Sbjct: 83 MAIDKVKIYNNTSIIQDEVFAHRLGLIPIKADPRMFEYRSEDNEEGTPEDTLVFELKVKC 142
Query: 173 ERGGPRL-------------TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
V T ++KW+P G++ Q
Sbjct: 143 TMNKNATEHATDPDELFINHKVTTRDMKWIPKGNQ------------------------Q 178
Query: 220 DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
+L + S P++ DI IA+L PGQEI++E H VKG+G+ HAK+SPVATA YR++P I
Sbjct: 179 ELFKD-SICPVQD--DILIAKLRPGQEIDIEMHCVKGLGQDHAKFSPVATASYRLMPVIE 235
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVS 339
L E+AE+L V +E+I G+K A V PRA T RE +R + V
Sbjct: 236 LTRPYLGEEAEQLAACFAPGVILVEEI-KGQKTALVVNPRADTCSREVMRHA-HLKDGVK 293
Query: 340 IRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+ + + HFIF++ESTGAL PE L EA+ +L KC I E+
Sbjct: 294 LSQERYHFIFSVESTGALPPEALVCEAINVLMSKCRLFIREI 335
>gi|213403846|ref|XP_002172695.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
gi|212000742|gb|EEB06402.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
Length = 349
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 208/354 (58%), Gaps = 27/354 (7%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++ RT V D + + G Y DNS L+ F +++ L +M FD
Sbjct: 4 VDRSRTEVGIQADRVTDVGSTDFPGYY--FDEDNSWNLEEFKKKLNIKITSLDDLNMTFD 61
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ GIDA+I NAFRRILIAE+PT+AIE V I NNTS++QDEVL+HRLGLIP+ DP +F++
Sbjct: 62 ISGIDASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDEVLSHRLGLIPLKADPDMFKW 121
Query: 152 M-----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET--KPDSN 204
T + +T+VF L+V C+ +T+ K N L E KP
Sbjct: 122 FVRPGPGMEATHTDYDTVVFSLNVKCDFNKEAAPGETDPKKLYLNSEVLSGELVWKPQGR 181
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+ + F++NP+ + +I +A+L PGQEI+LEAHA+ GIG+ HAK
Sbjct: 182 QAER----------------FADNPLTVVNPNIVVAKLRPGQEIDLEAHAILGIGQDHAK 225
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
+SPV+TA YR+LP I +LE +E EDA K K P V ++ED +GK RA VA R T+
Sbjct: 226 FSPVSTASYRLLPAIHILEPIEGEDAIKFQKCFPAGVIELEDGPNGKPRARVADVRKDTV 285
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
RECLR E+ +V + RV+D+F+++IESTG + P+ LF +++ +L+ KC V
Sbjct: 286 SRECLR-HPEFADKVQLGRVRDYFLYSIESTGIIKPDQLFLKSIAVLKSKCMAV 338
>gi|325187132|emb|CCA21673.1| DNAdirected RNA polymerase I and III subunit RPAC1 p [Albugo
laibachii Nc14]
Length = 343
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 143/320 (44%), Positives = 193/320 (60%), Gaps = 46/320 (14%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
L ++++ L +MEFDLIG+D +IANA RRIL++E+PTMAIE V I NN+S+I
Sbjct: 34 LTTLTQQIQIQIKHLDDQEMEFDLIGVDPSIANALRRILLSEVPTMAIEHVYIWNNSSII 93
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYM--SENDTSNEKNTIVFKLHVLCERGGP--------- 177
QDEVLAHRLGLIP++VDPR F++ E + ++NTIVFKL V C R P
Sbjct: 94 QDEVLAHRLGLIPLLVDPREFQHFPEDEEAEATDENTIVFKLDVTC-RSDPNEPENSSKA 152
Query: 178 -RLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-D 235
+V + +L+W+P G++ +TS IRP+ D
Sbjct: 153 SHSSVYSRDLEWVPQGNQ--------------EERFTS---------------IRPVSED 183
Query: 236 ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKT 295
I IA+L PGQ I LEAH KGIG+ HAK+SPV+TA YR+LP I E V E+A +L +
Sbjct: 184 ILIAKLRPGQSIALEAHCRKGIGRDHAKFSPVSTASYRLLPRIEFTEPVVGEEALELAQN 243
Query: 296 -CPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIEST 354
C VFDIEDI +G A V+ R CT+CREC+R W+ ++ + R DHFIF+IES
Sbjct: 244 KCVSKVFDIEDI-AGLPTAIVSDSRKCTMCRECIR-APGWDSKIQLGRQHDHFIFSIESA 301
Query: 355 GALSPETLFTEAVKILEDKC 374
G P+ L +EA+ +L +KC
Sbjct: 302 GMFQPQELLSEALTVLMEKC 321
>gi|294891094|ref|XP_002773417.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239878570|gb|EER05233.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 365
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 207/369 (56%), Gaps = 42/369 (11%)
Query: 24 VPQKLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRL 83
VP I+ + R++ L+ P + + SG YASMG+DNS + F +++V R
Sbjct: 2 VPPPTKESIKQKHRRMELTLEGPSNPQTADDSGVYASMGIDNSYDREEFQRRLKMKVQRA 61
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
+ + +E D++GID IANA RRI+IAE+PT+AIEK + NT VI DE+LAHRLGL+PI
Sbjct: 62 SDEVVEVDVVGIDPPIANALRRIMIAEIPTIAIEKCYVYQNTGVIHDEILAHRLGLVPIY 121
Query: 144 VDPRLFEYMSE-------NDTSNEKNTIVFKLHVLCERGGP---RLTVKTNELKWLPNGS 193
D + E +D ++ I F L +C + P + V + +LKW+P +
Sbjct: 122 CDIDSLKMRDEDAPPEQRDDVTDPDTWICFSLEKVCPQSHPPRESMPVYSGDLKWVPLNA 181
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAH 252
E E + + ++P RP+ D+ I +L GQE+E++
Sbjct: 182 E--QEER------------------------YKDDPPRPVYDDVLITKLRCGQELEIKCF 215
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
KGIGK HAKWSPV TA YR++P+I+L E +E +A+K CP+ VFDIED
Sbjct: 216 CCKGIGKIHAKWSPVCTATYRLMPDIILKEPIEGAEAKKFKLVCPMGVFDIEDGA----- 270
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
A V PRACT CR+C+ G + +VS+ ++KDHFIFT+ES G + +F +A ++++
Sbjct: 271 AVVKNPRACTTCRQCIEPGNGFADKVSLGKLKDHFIFTVESVGQIPAPQIFAQAAVVMQN 330
Query: 373 KCERVITEL 381
KC V L
Sbjct: 331 KCRLVKKSL 339
>gi|452821148|gb|EME28182.1| DNA-directed RNA polymerase III subunit C5 [Galdieria sulphuraria]
Length = 300
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/297 (45%), Positives = 187/297 (62%), Gaps = 28/297 (9%)
Query: 46 PIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRR 105
P +TE + S Y ++G+D+SL L+ F N ++ +++ +++++ +L+G+ A + NA RR
Sbjct: 16 PTNTEGMYASSVYRAIGIDHSLDLETFLNQLQLRLVKNSEEEIILELVGVAAPLINALRR 75
Query: 106 ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIV 165
IL AE+PTMAIE VLI++NTSVI DE+LAHRLGLIPI DP F+ + + E NTIV
Sbjct: 76 ILFAEVPTMAIEYVLISDNTSVIHDEILAHRLGLIPIQADPDGFQDYRKGEEPRENNTIV 135
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
KL V C++ P+ G+E P E +SN S+ + + L +F
Sbjct: 136 LKLQVECKQ-NPQAR----------PGAE-PEELYINSNVYSRDLVWEPLGNQ---LEKF 180
Query: 226 SNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
N IRP+ DI IA+L P Q IELEA +KGIGK HAKWSPVATA+Y MLP++ LL+D+
Sbjct: 181 GKNGIRPVSEDILIAKLRPKQRIELEARCIKGIGKEHAKWSPVATAYYAMLPQVELLQDI 240
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKR------------ATVAQPRACTLCRECLR 329
DEDA +L++ CP+ VFD+ED+ K A V +PR CTLCREC+R
Sbjct: 241 LDEDARRLIQKCPMKVFDLEDMADKKHSYVEQQQPISHVIAKVVEPRRCTLCRECIR 297
>gi|403419367|emb|CCM06067.1| predicted protein [Fibroporia radiculosa]
Length = 377
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 205/365 (56%), Gaps = 47/365 (12%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+LPP + R V + + N Y G Y G D+S L HF N +V V RL++
Sbjct: 13 QLPPSVFNPRRHVNVHAERVSDVSNTEYPGHYP--GEDHSWNLAHFKQNLKVSVKRLSQR 70
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+EFDLIG+DA+IANAFRRI+IAE+P++AIE V + NNTSVI DEVLAHRLGL+P+ VDP
Sbjct: 71 SVEFDLIGVDASIANAFRRIMIAEVPSLAIENVYVWNNTSVIHDEVLAHRLGLVPLNVDP 130
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLC--------ERGGPRL----TVKTNELKWLPNGSE 194
LF+Y D ++NT+VF+L+V C E+G R VK+ +L+W+P G +
Sbjct: 131 SLFDY--REDVPTDRNTLVFRLNVACEVDKSASKEKGASRKFLHELVKSGDLEWIPQGEQ 188
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+ P++K +I +A+L PGQEIE+E HA+
Sbjct: 189 AAVFAGCTPAPTNK--------------------------EIVLAKLRPGQEIEMELHAI 222
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
K +GK HAKWSPVATA YR+ P IVL + V EK V I+ G+
Sbjct: 223 KNVGKVHAKWSPVATASYRLHPLIVLNPSKPVPPHLGEKFAACFSPGVVQIDR--DGQIS 280
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
R ++ RE LR +E+E V ++R++D FI+TIES G +PE LF EA+K++
Sbjct: 281 IHEHNMRKESMSREVLR-HKEFEGCVELKRIRDWFIYTIESEGPYAPEDLFPEAIKVMRS 339
Query: 373 KCERV 377
K +
Sbjct: 340 KIANI 344
>gi|428166654|gb|EKX35626.1| hypothetical protein GUITHDRAFT_90183 [Guillardia theta CCMP2712]
Length = 375
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 217/370 (58%), Gaps = 36/370 (9%)
Query: 26 QKLPPHIEFQRTRVQCNLDAPIHTENVMYS-GAYASMGVDNSLQLDHFCNNFRVEVIRLT 84
+K+ + F + V CN AP HT YS G + D L ++ + + +++++ +
Sbjct: 5 EKMSADLRFFKEYVICNGTAPTHT--TTYSPGTFPE---DEVLDINKWRDRVKMKILEIK 59
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
+D M FDL GI+ A+AN+ RR+L+AE+PTMAIEKV + NNT V++DE++A RLGLIPI+
Sbjct: 60 EDQMSFDLSGIEVALANSIRRVLLAEVPTMAIEKVFVYNNTGVLRDELVAQRLGLIPIMA 119
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
DP +F + S ++ T + KL E + + ++ + P +
Sbjct: 120 DPEIFSWPSAEAKGADETTNLDKL----------------EKEVIKFKLKVKCKKPPHDS 163
Query: 205 PSSKPRTYTSFSSSQDLLP------EFSNNPIRPML-DITIARLGPGQEIELEAHAVKGI 257
+P FSS + +P F ++P P+ DI I RL PGQE+++E H KG
Sbjct: 164 ADKEPINGKVFSSQLEWIPIGKQAETFKSSPPAPVHDDILITRLRPGQELDMEMHCHKGN 223
Query: 258 G---KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--GKKR 312
+ HAKWSPVATAWYR+LP I L+E+V + A+ LVK CP++ FDIE+ G +R
Sbjct: 224 NCGDRGHAKWSPVATAWYRLLPRIDLVEEVTGDLADSLVKKCPMDCFDIEEAHGVPGGRR 283
Query: 313 ATVA-QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
A V+ + R CTLCREC+R E K V + R KDHFIFTIESTG + P LF +A+++L+
Sbjct: 284 AIVSDKVRDCTLCRECIR-EPELAKAVRLARKKDHFIFTIESTGIIKPAQLFKQALQVLK 342
Query: 372 DKCERVITEL 381
K + ++ L
Sbjct: 343 GKAQNMLDHL 352
>gi|242021511|ref|XP_002431188.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212516437|gb|EEB18450.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 347
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/313 (44%), Positives = 195/313 (62%), Gaps = 41/313 (13%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
L +MEFDL+GI+ A+ANAFRRIL++E+P+MAIEKV ++NNT++I+DEVLAHRLGL+P+
Sbjct: 50 LNDTEMEFDLVGINCAVANAFRRILLSEVPSMAIEKVFVSNNTTLIKDEVLAHRLGLVPL 109
Query: 143 IVDPRLFEYMSENDTS-NEKNTIVFKLHVLC--ERGGPR-----------LTVKTNELKW 188
D RLFEY SEN NE++T+ F+L + C + G + +V + LKW
Sbjct: 110 KADSRLFEYRSENSNEPNEQDTLEFELKIKCSVNKEGHKNSYQIDDLYINHSVYSKHLKW 169
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
+P GS+ TY E + P+ P DI + +L PGQE++
Sbjct: 170 VPIGSQ--------------GTTYD----------EKNIGPVLP--DILLNKLRPGQELD 203
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
L+ HAVKG+GK H K+SPVATA+YRMLPEI +++ V E AE+L V +I +
Sbjct: 204 LKLHAVKGLGKDHTKFSPVATAFYRMLPEITMVKKVTGEAAERLQNCFSPGVIEIRENDE 263
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
G+K A VA R + R R E+ + V ++RV++HFIF IES GA+ P LF EAVK
Sbjct: 264 GEKEAYVASARYDSGSRIVFR-QEDLKDCVEMKRVRNHFIFNIESVGAIPPNELFVEAVK 322
Query: 369 ILEDKCERVITEL 381
+L++KC +++ EL
Sbjct: 323 VLKNKCFKLLQEL 335
>gi|345566662|gb|EGX49604.1| hypothetical protein AOL_s00078g93 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 145/356 (40%), Positives = 211/356 (59%), Gaps = 25/356 (7%)
Query: 29 PPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
P E +R R V L+ + + + G Y G D+S LD F N ++++ + D
Sbjct: 3 PSKEELERRRIVGVELERVSNVTSTDFPGHYP--GEDHSWNLDDFKKNSKIDIHKANDLD 60
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
EFDLIG+DA++ANAFRRILI+E+PT+AIE V + NNTS++QDEVLA RLGL+P+ D +
Sbjct: 61 YEFDLIGVDASVANAFRRILISEVPTLAIETVFVHNNTSIVQDEVLAQRLGLVPLRGDKK 120
Query: 148 LFEYMSENDTSNEK--------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
F+ + S ++ NT+V L V C R +T+ K N S +
Sbjct: 121 GFQQLRWRKKSPDEPAAEATDFNTVVMTLKVACTRNHATPNTETDPSKLYFNSSVYARDI 180
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
K + + R + FS + ++ P+ P DI +A+L PGQEI+LE H V GIG+
Sbjct: 181 K----FAPQGRQSSWFSGAGEI------RPVNP--DILLAKLRPGQEIDLEIHCVLGIGQ 228
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE-DIGSGKKRATVAQP 318
HAK+SPVATA YR+LP I + + + EDAEK V P V +++ D +G+ A V P
Sbjct: 229 DHAKFSPVATASYRLLPSIKIKKPITGEDAEKFVNCFPKGVAEVQKDKKTGENTAVVVNP 288
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
R T+ RE LR +E++ +V + R++DHFIF+IESTG + + LF +AV+IL+ KC
Sbjct: 289 RKDTVSREVLR-HDEFKGKVELGRIRDHFIFSIESTGMYNSDELFLQAVQILKKKC 343
>gi|395324899|gb|EJF57331.1| insert subdomain of RNA polymerase alpha subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 370
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 146/342 (42%), Positives = 199/342 (58%), Gaps = 46/342 (13%)
Query: 47 IHTENVM------YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIA 100
+H E V + G Y G D+S L F N +V V RL++ +EFDL+G+DAAIA
Sbjct: 22 VHAERVSDVSSTEFPGHYP--GEDHSWNLAKFKQNLKVSVKRLSQRSVEFDLVGVDAAIA 79
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE 160
NAFRRILIAE+PT+AIE V + NNTSVI DE+LA R+GLIP+ VDPRLF++ +
Sbjct: 80 NAFRRILIAEVPTIAIEDVFVFNNTSVIHDEILAQRIGLIPLNVDPRLFDFRPPGGIPMD 139
Query: 161 KNTIVFKLHVLCERG-----GPRLT--VKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+NT+VFKL+V CER P + VK+ +L W P G + T
Sbjct: 140 RNTLVFKLNVTCERAKKGSSSPYINEYVKSGDLVWEPQGEQA-----------------T 182
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
F+S P + NP DI +A+L PGQ IE+E HA+KG+GK HAKWSPVATA YR
Sbjct: 183 VFASR----PPAATNP-----DIVLAKLRPGQVIEMELHAIKGVGKEHAKWSPVATATYR 233
Query: 274 MLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
+ P ++L + V E A+K K V ++ +G+ R T+ RE LR
Sbjct: 234 LHPLVLLNPSKPVPPEHAQKFAKCFSPGVVEVS--AAGEVAINERYLRTETMSREALRH- 290
Query: 332 EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+E+E V ++R++D FIF +ES G +PE L EA+K++ K
Sbjct: 291 KEFEGCVELKRIRDWFIFQVESEGPYTPELLLPEAIKVMRGK 332
>gi|380478357|emb|CCF43643.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 372
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 203/381 (53%), Gaps = 46/381 (12%)
Query: 24 VPQKLPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIR 82
P P E R R V N + + Y G YA G D+S LD F +NFRV+
Sbjct: 2 APSSTPSQAELDRRRIVGVNKETVTDVSSTDYPGTYA--GEDHSWDLDRFASNFRVQFHH 59
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ + F L+G+DA+IANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP
Sbjct: 60 NAQHEASFSLVGVDASIANAFRRILIAEIPTIAIENVYIENNTSVIQDEVLAHRLGLIPF 119
Query: 143 IVDP----RLFEYMSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
+P + ++ + S + NT+ +L + C R N
Sbjct: 120 TGNPEGIHKFLKWYRKPEQGGKGSFDYNTVQLRLRIECTR----------------NSDA 163
Query: 195 LPLETKPDS---NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELE 250
P ET PD N S + + + L + IRP+ DI +A+L PGQ IEL+
Sbjct: 164 APGETDPDKAFHNASVYAKDIEFVPTGRQLEFFSGEDAIRPVNPDILVAKLRPGQCIELD 223
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI---- 306
H KGIG HAK+SPVATA YR++P I + + +DAEK K P V IE +
Sbjct: 224 MHMHKGIGADHAKFSPVATASYRLMPTITITRPILGQDAEKFAKCFPQGVIGIEKVTKKE 283
Query: 307 ----GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGA 356
GS G+K+A V T+ RECLR E+E +V + RV+DHFIF+IESTG
Sbjct: 284 AAVAGSGFEGQEGEKKAVVKDAMKDTVSRECLRH-PEFEGKVKLGRVRDHFIFSIESTGQ 342
Query: 357 LSPETLFTEAVKILEDKCERV 377
+ LF E+VK + +C R+
Sbjct: 343 WDSDELFLESVKQFKTRCMRL 363
>gi|289742757|gb|ADD20126.1| RNA polymerase I and III subunit rPA40/rPC40 [Glossina morsitans
morsitans]
Length = 330
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/334 (39%), Positives = 192/334 (57%), Gaps = 50/334 (14%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ ++ F F++ V+R +++EFD++G+ IANAFRR++++E+P+MAIEKV I N
Sbjct: 28 DDPFDIESFKKKFKIIVVRYQGNELEFDMVGVHPGIANAFRRLMLSEVPSMAIEKVYIHN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMS-ENDTSNEKNTIVFKLHVLCERGGPRLTVK 182
NTS+IQDEVLAHRLGLIP+ DPRLFEY E+D E++T+ F+L V C R R VK
Sbjct: 88 NTSIIQDEVLAHRLGLIPLKADPRLFEYRGDESDQGTEQDTLDFELKVKCSR---RKDVK 144
Query: 183 ---------------TNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
+ ++KWLP G + + ++ D P
Sbjct: 145 ESSNFDSIYKNHKIYSGQIKWLPKGKQAQIYSESDVGPIDD------------------- 185
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
DI I ++ PG E+++ AVKGIGK HAK+SPVATA+YR+LPE+ L +DV +
Sbjct: 186 -------DILITQMRPGHELDIRLAAVKGIGKDHAKFSPVATAFYRLLPEVKLKKDVVGK 238
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
DA L K V +++ RA V R T R R + V + R++DH+
Sbjct: 239 DAFLLQKCFSPGVIGLDE----NDRAYVKNARYDTCSRNVYRY-PQLADVVEMARIRDHY 293
Query: 348 IFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
IFT+ES GAL P+ +F EAVK+L+ KC + + E+
Sbjct: 294 IFTVESLGALKPDVIFIEAVKLLKSKCRKFLDEI 327
>gi|209876648|ref|XP_002139766.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Cryptosporidium muris RN66]
gi|209555372|gb|EEA05417.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Cryptosporidium muris RN66]
Length = 351
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 147/364 (40%), Positives = 201/364 (55%), Gaps = 57/364 (15%)
Query: 34 FQRTRVQCNLDAPIHTENVMYSGA------------YASMGVDNSLQLDHFCNNFRVEVI 81
+ ++C L+ P + Y G+ M V+N L+L +++
Sbjct: 16 YSSKYLKCTLEGPRNVGGYGYIGSRTLSETADRKNTIKPMTVENILKL------IDIKIN 69
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
LT D + FDLIG+DAA+ANA RRIL+ E+PT+AIE V I N+ VIQDEVLAHRLGLIP
Sbjct: 70 ELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRLGLIP 129
Query: 142 IIVDPRLFEYMSENDTSNEKNTIVFKLHVLCER-------GGPRLTVKTNELKWLPNGSE 194
+D L ++ +E+ NEKN++ FKL V C + G + + +L W+P
Sbjct: 130 FNIDLDLIDFRAEDQDLNEKNSVCFKLCVECNKYDIDDKNGITSKAIYSKDLIWVP---- 185
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
S SQ + E P DI I +L PGQ IE +
Sbjct: 186 --------------------MSESQKQIFE-KKPPSVVYPDILITKLRPGQVIEAILYCE 224
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLED-VEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
KGIGKTHAKWSPV+TA YR+LPE E + +DA++ V+ CP+NVFDIEDI +GK
Sbjct: 225 KGIGKTHAKWSPVSTATYRLLPEFKFPEGYITGKDAKEFVEVCPMNVFDIEDI-TGK--V 281
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
V PR CT CR C+ E++ K+V I + K HFIF+IESTG++SP L A+ IL +K
Sbjct: 282 YVKNPRNCTTCRACI---EKFPKKVEIFKNKHHFIFSIESTGSISPIQLVKTAINILREK 338
Query: 374 CERV 377
++
Sbjct: 339 SHKI 342
>gi|189239160|ref|XP_971966.2| PREDICTED: similar to CG3756 CG3756-PA [Tribolium castaneum]
Length = 338
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 198/338 (58%), Gaps = 49/338 (14%)
Query: 63 VDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
+D L F FRV ++R ++++EFDLIGI +AN FRR++++++PTMAIEKV I
Sbjct: 30 LDEKWDLKTFKKRFRVVIVRSEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHIL 89
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLC------ 172
NNTS+IQDEVLAHRLGLIP+ DPRLFE ++ +S E++T+ F L + C
Sbjct: 90 NNTSIIQDEVLAHRLGLIPLKADPRLFEMKTDRKSSTAEGTEQDTLEFALKIKCTNNKDS 149
Query: 173 -------ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
E V + +KW+P G + K R F
Sbjct: 150 SKDSLRAEDMYKNNNVYSKHIKWVPIGKQ-------------KER--------------F 182
Query: 226 SN-NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
S+ PI P DI IA++ PG E++L+ AVK G+ HAK+SPVATA+YR+LP+I LL +V
Sbjct: 183 SDVGPIHP--DILIAKMRPGHELDLKLLAVKSNGRDHAKFSPVATAFYRLLPDIKLLREV 240
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
E E AE+L K V I G+K A VA R T R R E+ + V++ +++
Sbjct: 241 EGEAAERLQKCFSPGVISIRH-EKGRKYAVVANARYDTGSRNVFRY-EDLKDAVAMTKIQ 298
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
DHFIFT+ES GAL P+ +F EAVKIL+DKC ++ ELS
Sbjct: 299 DHFIFTVESVGALPPDVIFMEAVKILKDKCLALLDELS 336
>gi|300120859|emb|CBK21101.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 195/328 (59%), Gaps = 41/328 (12%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
LD N ++ ++ + + + F+L+G+DA+IANA RR+LIAE+PTMAI V + NNTSV+
Sbjct: 29 LDGLDENLKINILSQSDEQVVFELVGVDASIANALRRVLIAEVPTMAISTVFMNNNTSVM 88
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYM---SENDTS----NEKNTIVFKLHVLCERGGPRLTV 181
QDEVL HRLGLIPI D F+Y+ EN + +KN++ F L V C P L+
Sbjct: 89 QDEVLCHRLGLIPIKADANDFDYICPPGENGHNRSDFTDKNSLKFNLRVTC----PSLS- 143
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL--------LPEFSNNPIRPM 233
EL+ N + T +S S +L LPE +
Sbjct: 144 ---ELQKAANNRNV--------------EYLTVYSQSLELEKLGRQLDLPEGQIGLVHD- 185
Query: 234 LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
DI + +L PGQ I+LE +A KG+G+ HAKWSPV TA YRM P I + + EDAE++
Sbjct: 186 -DIILTKLAPGQAIDLECYATKGVGEDHAKWSPVCTAVYRMRPSIRFPKPLVGEDAERMK 244
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES 353
+TCP+ VFDIEDIG G+K VA CT+CREC+R E EK V + +++ FIF++ES
Sbjct: 245 QTCPMGVFDIEDIG-GEKTLHVAHDLNCTMCRECIRLPENREK-VQLGVIRNDFIFSVES 302
Query: 354 TGALSPETLFTEAVKILEDKCERVITEL 381
TG +S ++L A+++L+ KCE +I EL
Sbjct: 303 TGCVSAKSLVPRALEVLKQKCETIIKEL 330
>gi|384495741|gb|EIE86232.1| hypothetical protein RO3G_10943 [Rhizopus delemar RA 99-880]
Length = 247
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/269 (48%), Positives = 170/269 (63%), Gaps = 42/269 (15%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
KLP ++E RTRV D P + +DNS L+ F NF+V++ RL+K
Sbjct: 5 KLPENVELLRTRVASGSDYP-----------HQYPAIDNSFNLEEFKKNFKVKIQRLSKH 53
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+EFDLIGIDA+IANAFRRI+IAE+PTMAIEKV + NNTS+IQDEV+AHRLGLIPI+ DP
Sbjct: 54 SVEFDLIGIDASIANAFRRIMIAEVPTMAIEKVYVMNNTSIIQDEVVAHRLGLIPILADP 113
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
+ F+YM+E+ + NT+VF+L CE + P S P ET P
Sbjct: 114 KEFDYMTEDGGPTDLNTLVFRLKKKCE--------------FNPEAS--PDETDPHK--- 154
Query: 207 SKPRTYTSFSSSQDLLPE--------FSNNPIRPML-DITIARLGPGQEIELEAHAVKGI 257
+ S+ S+DL+ E F+NNP RP+ DI IA+L PGQE+E+E H KG+
Sbjct: 155 ---KYINSYVYSKDLIWEPKGNQEEKFANNPPRPVHDDIVIAKLRPGQEMEMELHCQKGV 211
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVED 286
G+ HAKWSPVATA YR+LPEI +LE + D
Sbjct: 212 GREHAKWSPVATASYRLLPEITILEPITD 240
>gi|270010836|gb|EFA07284.1| hypothetical protein TcasGA2_TC014519 [Tribolium castaneum]
Length = 335
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 196/335 (58%), Gaps = 46/335 (13%)
Query: 63 VDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
+D L F FRV ++R ++++EFDLIGI +AN FRR++++++PTMAIEKV I
Sbjct: 30 LDEKWDLKTFKKRFRVVIVRSEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHIL 89
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE-NDTSNEKNTIVFKLHVLC--------- 172
NNTS+IQDEVLAHRLGLIP+ DPRLFE ++ E++T+ F L + C
Sbjct: 90 NNTSIIQDEVLAHRLGLIPLKADPRLFEMKTDPTAEGTEQDTLEFALKIKCTNNKDSSKD 149
Query: 173 ----ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN- 227
E V + +KW+P G + K R FS+
Sbjct: 150 SLRAEDMYKNNNVYSKHIKWVPIGKQ-------------KER--------------FSDV 182
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
PI P DI IA++ PG E++L+ AVK G+ HAK+SPVATA+YR+LP+I LL +VE E
Sbjct: 183 GPIHP--DILIAKMRPGHELDLKLLAVKSNGRDHAKFSPVATAFYRLLPDIKLLREVEGE 240
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
AE+L K V I G+K A VA R T R R E+ + V++ +++DHF
Sbjct: 241 AAERLQKCFSPGVISIRH-EKGRKYAVVANARYDTGSRNVFRY-EDLKDAVAMTKIQDHF 298
Query: 348 IFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
IFT+ES GAL P+ +F EAVKIL+DKC ++ ELS
Sbjct: 299 IFTVESVGALPPDVIFMEAVKILKDKCLALLDELS 333
>gi|167535426|ref|XP_001749387.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772253|gb|EDQ85908.1| predicted protein [Monosiga brevicollis MX1]
Length = 363
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 45/362 (12%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRL--TKDDMEFDLI 93
R RV D +T + + G+Y G+D+S L+ +++V R+ ++ ++EFD+I
Sbjct: 9 RERVSLTKDRVDYTASTDFPGSYP--GIDDSWNLEAIKKKLKIDVTRIEDSEYELEFDII 66
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+DAAI N RRILIA+ PTMAIE V I NNTS++ DE+ AHRLGLIPI DPR F Y +
Sbjct: 67 GLDAAIVNTIRRILIADTPTMAIESVYIFNNTSMLPDELFAHRLGLIPIKADPRHFTYRA 126
Query: 154 ENDTS-NEKNTIVFKLHVLCER--GGP-----------RLTVKTNELKWLPNGSELPLET 199
++ + NTIVF L +C + P + + +L+W P G + +
Sbjct: 127 DDGGQPTDANTIVFNLKRVCTKKPNAPADATNPEDLYENAVIYSRDLEWAPQGQQEQVFG 186
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
K FS D DI I ++ PGQE+ ++ KG+GK
Sbjct: 187 K------------NGFSVVYD--------------DIVIMKMRPGQEVNMQLFCEKGVGK 220
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
THAKWSPVATA YR++PEI+L E + A KL K V DI G+ A + PR
Sbjct: 221 THAKWSPVATASYRLMPEIILKEPIVGPLAHKLQKCFSPGVCDIVKNSKGEDEAKIVNPR 280
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVIT 379
A T+ RE R ++ +V + RV+DHFIF++ES GAL+P+ L A++ L+ KC+RVI
Sbjct: 281 ADTVSREVFR-HDDLRDKVELNRVRDHFIFSVESVGALAPDVLVLMALQELKSKCQRVID 339
Query: 380 EL 381
L
Sbjct: 340 FL 341
>gi|343427703|emb|CBQ71230.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Sporisorium reilianum SRZ2]
Length = 402
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 147/346 (42%), Positives = 196/346 (56%), Gaps = 40/346 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R N D P+H G D++ L + RV V RL+ EFDLIG
Sbjct: 68 ERVGSVANTDFPLHHP-----------GEDHAFSLAAANDKLRVIVTRLSDASCEFDLIG 116
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANA RR+L+AE+PT+AIE V I NNTS+IQDEVL+HRLGL+P+ ++P +
Sbjct: 117 VDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGLVPLAINPDKVLMRNA 176
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS-----NPSSKP 209
D +++ NT+VF L CER N S ET PD N S+
Sbjct: 177 GDDADDSNTVVFHLKAKCER----------------NRSAARGETDPDKLYIGHNVYSEQ 220
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
+ + QD +F++ P RP+ D I IA+L PGQE++LE H KGIGK HAK+SPVA
Sbjct: 221 LQWDA-KGGQD--EDFADAPPRPVHDKILIAKLRPGQELDLELHCEKGIGKDHAKFSPVA 277
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT-VAQPRACTLCREC 327
TA YR+LP I LL+ + E + VK P V +E GSG +R V R T+ RE
Sbjct: 278 TATYRLLPHIQLLQPIPAEHIDSFVKCFPPGVIGVE--GSGDQRKVFVKDARRDTISREV 335
Query: 328 LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
R E+E +V + RV+DHF+F +ESTG + PE L EA+K L K
Sbjct: 336 FR-HHEFEDKVKLGRVRDHFLFDLESTGIIPPEKLLPEAIKTLRSK 380
>gi|300175011|emb|CBK20322.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 194/328 (59%), Gaps = 41/328 (12%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
LD N ++ ++ + + + F+L+G+DA+IANA RR+LIAE+PTMAI V + NNTSV+
Sbjct: 29 LDGLDENLKINILSQSDEQVVFELVGVDASIANALRRVLIAEVPTMAISTVFMNNNTSVM 88
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYM---SENDTS----NEKNTIVFKLHVLCERGGPRLTV 181
QDEVL HRLGLIPI D F+Y+ EN + +KN++ F L V C P L+
Sbjct: 89 QDEVLCHRLGLIPIKADANDFDYICPPGENGHNRSDFTDKNSLKFNLRVTC----PSLS- 143
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL--------LPEFSNNPIRPM 233
EL+ N + T +S S +L LPE +
Sbjct: 144 ---ELQKAANNRNV--------------EYLTVYSQSLELEKLGRQLDLPEGQIGLVHD- 185
Query: 234 LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
DI + +L PGQ I+LE +A KG+G+ HAKWSPV TA YRM P I + + EDAE++
Sbjct: 186 -DIILTKLAPGQAIDLECYATKGVGEDHAKWSPVCTAVYRMRPSIRFPKPLVGEDAERMK 244
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES 353
+ CP+ VFDIEDIG G+K VA CT+CREC+R E EK V + +++ FIF++ES
Sbjct: 245 QICPMGVFDIEDIG-GEKTLHVAHDLNCTMCRECIRLPENREK-VQLGVIRNDFIFSVES 302
Query: 354 TGALSPETLFTEAVKILEDKCERVITEL 381
TG +S ++L A+++L+ KCE +I EL
Sbjct: 303 TGCVSAKSLVPRALEVLKQKCETIIKEL 330
>gi|407929549|gb|EKG22366.1| DNA-directed RNA polymerase 30-40kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 377
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 210/391 (53%), Gaps = 65/391 (16%)
Query: 24 VPQKLPPHIEFQRTRVQCNLDAPIHTENVM------YSGAYASMGVDNSLQLDHFCNNFR 77
V ++ P E Q+ R+ +H E+V Y G + G D+ L+ F NFR
Sbjct: 2 VSKRDPSQEELQQRRI-----VGVHAEHVSNISSTDYPGHFP--GEDHRWDLEKFRKNFR 54
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE R + + +F LIG+DAAIANAFRRILIAELPT+AIE V I NTS+IQDEVLAHRL
Sbjct: 55 VEFHRNEQFESQFSLIGVDAAIANAFRRILIAELPTLAIEDVYILKNTSIIQDEVLAHRL 114
Query: 138 GLIPIIVDPRLFEYM----------SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
G+IP+ P+ + M +E + NTIV +L+V CE
Sbjct: 115 GMIPLKGSPKAIQNMTWYKKPESGEAEQGAHTDYNTIVLELNVQCE-------------- 160
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP----------EFSNNPIRPMLDIT 237
W P+G E+ K +++P + ++ +P E + P+ P DI
Sbjct: 161 WHPDGREMA--KKGETDPKKLFINSSVYAHQIKFIPTGRQAELFAGENAIQPVNP--DIL 216
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP 297
IA+L PGQ I L H +KGIG HAK+SPVATA YR+LP I + + + AEK + P
Sbjct: 217 IAKLRPGQSINLSMHCIKGIGSDHAKFSPVATATYRLLPHIQITQPILGAHAEKFARCFP 276
Query: 298 ------VNVFDIEDIG-------SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
V V D E +G+KRA VA P T+ RE LR +E++ +V + RV+
Sbjct: 277 PGVIAQVPVTDEEAASDPALAGHAGEKRAVVANPFNDTVTREVLRH-DEFKDKVKLGRVR 335
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCE 375
DHFIF +ESTG + LF ++VK L+ KC+
Sbjct: 336 DHFIFNVESTGQFDSDELFIQSVKALKFKCQ 366
>gi|310800375|gb|EFQ35268.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 372
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 153/381 (40%), Positives = 203/381 (53%), Gaps = 46/381 (12%)
Query: 24 VPQKLPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIR 82
P P E R R V N + + Y G YA G D++ LD F +NFRV+
Sbjct: 2 APSSTPSQAELDRRRIVGINKETVTDVNSTDYPGTYA--GEDHAWDLDRFASNFRVQFHY 59
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ + F LIG+DA+IANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP
Sbjct: 60 NAQHEASFSLIGVDASIANAFRRILIAEIPTIAIENVYIENNTSVIQDEVLAHRLGLIPF 119
Query: 143 IVDP----RLFEYMSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
+P + ++ + S + NT+ +L V C R N
Sbjct: 120 TGNPEGIHKFLKWYRKPEHGGKGSFDYNTVQLRLRVECTR----------------NPDA 163
Query: 195 LPLETKPDS---NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELE 250
P ET P+ N S + + + L + IRP+ DI +A+L PGQ IEL+
Sbjct: 164 APGETDPNKAFLNSSVYAKDIEFVPTGRQLEFFSGEDAIRPVNPDILVAKLRPGQCIELD 223
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI---- 306
H KGIG HAK+SPVATA YR++P I + + +DAEK K P V I+ +
Sbjct: 224 MHMHKGIGADHAKFSPVATASYRLMPTINITRPILGQDAEKFAKCFPEGVIGIDKVTKKD 283
Query: 307 ----GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGA 356
GS G+K+A V T+ RECLR E+E +V + RV+DHFIF+IESTG
Sbjct: 284 AAVAGSGYEGHEGEKKAVVKDAMKDTVSRECLRH-PEFEGKVKLGRVRDHFIFSIESTGQ 342
Query: 357 LSPETLFTEAVKILEDKCERV 377
+ LF E+VK + +C R+
Sbjct: 343 WDSDELFLESVKQFKTRCIRL 363
>gi|392560708|gb|EIW53890.1| insert subdomain of RNA polymerase alpha subunit [Trametes
versicolor FP-101664 SS1]
Length = 366
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 196/353 (55%), Gaps = 37/353 (10%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+LPP + R V + + + + G Y G D++ L F N V V RL++
Sbjct: 8 QLPPSVFNPRRHVGVHAERVSDVASTDFPGHYP--GEDHTWSLARFKENLTVSVKRLSQR 65
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+EFDL+G+DA+IANAFRRI+IAE+PT+AIE V + NNTSVI DE+LA RLGLIP+ VDP
Sbjct: 66 SIEFDLVGVDASIANAFRRIMIAEVPTIAIEDVFVWNNTSVIHDEILAQRLGLIPLNVDP 125
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT----VKTNELKWLPNGSELPLETKPD 202
LF D ++NT+VF+L + C RG V + +LKW+P G +
Sbjct: 126 ALFSPRLPGDIPYDRNTLVFQLDIECSRGAKGAIINEYVTSGDLKWVPQGEQE------- 178
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
S DL+P +N DI IA+L PGQ I +E HA+KG+GK HA
Sbjct: 179 -------------SVFGDLVPTATNK------DIVIAKLRPGQVINVELHAIKGVGKEHA 219
Query: 263 KWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
KWSPVATA YR+ P ++L + + A+K V + G+ R
Sbjct: 220 KWSPVATATYRLHPLVLLNPSKPIPPHLAQKFASCFSPGVVKVSP--DGEVSIDDRHLRK 277
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
T+ RE LR +E+E V ++RV+D FI+++ES G +PE LF E++KI+ K
Sbjct: 278 ETMSREVLRH-KEFEGSVELKRVRDWFIYSVESEGPYAPEVLFPESIKIMRGK 329
>gi|388858416|emb|CCF48010.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Ustilago hordei]
Length = 401
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 144/347 (41%), Positives = 193/347 (55%), Gaps = 42/347 (12%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R N D P+H G +S L V V RL+ EFDLIG
Sbjct: 66 ERVGSIANTDFPLHHP-----------GESHSFSLSSVNEKLNVIVTRLSDVSCEFDLIG 114
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANA RR+L+AE+PT+AIE V I NNTS+IQDEVL+HRLGL+P+ ++P
Sbjct: 115 VDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGLVPLAINPDKVLIRMP 174
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTS 214
D +++ NT+VF L CER PN + + +S+P +
Sbjct: 175 GDNADDSNTVVFSLKAKCERN--------------PNAA------RGESDPDKLYIGHNV 214
Query: 215 FSSS------QDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
+S D +F++ P +P+ I IA+L PGQE++LE H KGIG+ HAK+SPV
Sbjct: 215 YSEQLVWDPKGDQDEDFADAPPKPVHAKILIAKLRPGQELDLELHCEKGIGRDHAKFSPV 274
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR-ATVAQPRACTLCRE 326
ATA YR+LP I LL+ VE E +KL+K P V E G GK R A V R T+ RE
Sbjct: 275 ATATYRLLPHIQLLKPVEGEQVDKLLKCFPPGVIGAE--GEGKNRKAYVKDARKDTISRE 332
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
LR E+E +V + RV+DHF+F +ESTG + PE L EA+K L K
Sbjct: 333 VLRHA-EFEDKVKLGRVRDHFLFELESTGIIPPEKLLPEAIKTLRGK 378
>gi|395534244|ref|XP_003769156.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sarcophilus harrisii]
Length = 310
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 182/292 (62%), Gaps = 16/292 (5%)
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D G +A+ + ++PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFE
Sbjct: 28 DFPGNYCGFDDAWDQSRFEKVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFE 87
Query: 151 YMSEND-TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
Y ++ D E +T+ F+L V C R P+ +++ PN EL L K +K
Sbjct: 88 YRNQGDEDGTEIDTLQFQLKVKCTRN-PQAAKDSSD----PN--ELYLNHKV----YTKH 136
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
T+ + D+ PE + P+ DI IA+L PGQE++L H VKGIGK HAK+SPVAT
Sbjct: 137 MTWIPLGNQADVFPEGTIRPVHD--DILIAQLRPGQELDLVMHCVKGIGKDHAKFSPVAT 194
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
A YR+LP+I LL+ VE E AE+L + V ++DI GKK ATVA PR T RE R
Sbjct: 195 ASYRLLPDITLLQPVEGEAAEELSRCFSPGVIQVQDI-KGKKVATVANPRLDTFSREIFR 253
Query: 330 CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E +K V + RV+DH+IF++ESTG L PE L +EA+K+L KC R + EL
Sbjct: 254 -HENLKKLVRLARVRDHYIFSVESTGVLPPEVLVSEAIKVLMGKCRRFLDEL 304
>gi|190348712|gb|EDK41218.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 137/349 (39%), Positives = 199/349 (57%), Gaps = 36/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H+ N D+S ++ F +NF + + LT+ FD
Sbjct: 7 IEYNRVTNTTSTDFPGHSSNE-----------DHSWDIEKFKDNFEINISHLTERTANFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID ++ANAFRRI+I+E+P++A E V I NNTSVIQDEVLAHR+GLIP+ VDP L +
Sbjct: 56 LINIDTSVANAFRRIMISEVPSVAAESVYIFNNTSVIQDEVLAHRIGLIPLKVDPDLLSW 115
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E + ++NTIV L + C + P GS P + +++ +
Sbjct: 116 VDPAQDEKEKFTDENTIVLSLDIACTKN-----------PHPPAGSTDPKDLYRNAHVYA 164
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ + DL F NNP+ P DI IA+L PGQEI L AH + GIG HAK+SP
Sbjct: 165 RDLKFEPQGRQVDL---FKNNPVVPTDPDILIAKLRPGQEISLRAHCILGIGSDHAKFSP 221
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
V+TA YR++ +I + E + E A++ K P V IE+ A V R T+ RE
Sbjct: 222 VSTASYRLMSDIKITEPITGESAKRFQKCFPSGVIGIEN-----DTAFVKDARKDTVSRE 276
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR EE+ +V + R++DHFIF +ESTGA+ PE +F ++V++L++K +
Sbjct: 277 VLR-HEEFNGKVKLGRIRDHFIFNVESTGAMPPEEIFFKSVRVLKNKAD 324
>gi|405120194|gb|AFR94965.1| rpa42 [Cryptococcus neoformans var. grubii H99]
Length = 350
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/352 (40%), Positives = 196/352 (55%), Gaps = 19/352 (5%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
+P ++ R VQ + + G Y G D+S L F + V RLT
Sbjct: 1 MPSPLDNTRRHVQVFAERVGAVAGSEFPGHYP--GEDHSWNLQKFKQDLVASVQRLTPST 58
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFDL+G+DA+IANA RR LIAE+PT+AIE+V + NNTS++QDEVL HR+GL+P+ +DPR
Sbjct: 59 IEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDPR 118
Query: 148 LFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
Y S N +E +T+VF L V C+R R V +E P + DSN
Sbjct: 119 SLRYRPSANSQPHEHDTVVFDLRVRCDR---RPNVDRSETD--------PKKMYFDSNVY 167
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S + S D +F RP+ DI + +L PGQ+++L A KG+G HAK+S
Sbjct: 168 S---GMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFS 224
Query: 266 PVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PVATA YR+LP I+L + E +K P V +IE SG+ + V PR T+ R
Sbjct: 225 PVATASYRLLPHIILRGPIPKEHQQKFKGCFPPGVIEIEKDESGEDQCVVKNPRKDTVSR 284
Query: 326 ECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
E LR E++ V + R++DHFIF +ES G SPE L EA+KIL K + V
Sbjct: 285 EVLR-HPEFQDLVQLARIRDHFIFNVESAGQYSPEELVPEAIKILLGKIKDV 335
>gi|320165910|gb|EFW42809.1| polymerase I polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 414
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 192/365 (52%), Gaps = 47/365 (12%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD---MEFDL 92
R+RV D + ++ + + + + F FR+E I DD + FD+
Sbjct: 69 RSRVVLEADRVENAASIDFPANFPEEAAELAWDFGKFAAGFRIERIETDPDDPMAVTFDM 128
Query: 93 IGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM 152
+G+DAAIANAFRRILIAE+PTMAIE V NNTS+I DE LAHRLGL+PI DPR FE
Sbjct: 129 VGVDAAIANAFRRILIAEVPTMAIETVFFTNNTSIIHDEALAHRLGLVPIRADPRYFETR 188
Query: 153 SENDT-SNEKNTIVFKLHVLCER---GGPRLT----------VKTNELKWLPNGSELPLE 198
DT + ++NT+VF L V C + P T V ++++ W+P G
Sbjct: 189 DTPDTQATDRNTLVFTLDVKCTKNPHASPNATDDTEKYINSRVLSSDIVWVPKG------ 242
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGI 257
D +F + PI P+ D I IA+L PGQ + E H +K I
Sbjct: 243 ---------------------DQEAQFQDAPIAPVHDDILIAKLRPGQAVACEMHCIKSI 281
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
G+ HAK+SPV TA YR+LPEI+L V +DA L K + + +G A V
Sbjct: 282 GRDHAKFSPVGTASYRLLPEIILTRPVTGDDAYLLQKCFSPGTIGVRN-ENGVPTAYVID 340
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
R T RE R E V +RRV+DHF+F+IESTGAL P L E+V L+ KCE +
Sbjct: 341 ARRDTCSREIFR-HERLASAVKMRRVRDHFLFSIESTGALPPGDLLFESVLKLKSKCELI 399
Query: 378 ITELS 382
+ L+
Sbjct: 400 LAHLN 404
>gi|58266722|ref|XP_570517.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110920|ref|XP_775924.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258590|gb|EAL21277.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226750|gb|AAW43210.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 350
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/352 (40%), Positives = 196/352 (55%), Gaps = 19/352 (5%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
+P ++ R VQ + + G Y G D+S L F + V RLT
Sbjct: 1 MPSSLDNTRRHVQVFAERVGAVAGSEFPGHYP--GEDHSWNLQKFKQDLVASVQRLTPST 58
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFDL+G+DA+IANA RR LIAE+PT+AIE+V + NNTS++QDEVL HR+GL+P+ +DPR
Sbjct: 59 IEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDPR 118
Query: 148 LFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
Y S N +E +T+VF L V C+R R V +E P + DSN
Sbjct: 119 SLRYRPSANSQPHEHDTVVFDLRVRCDR---RPNVDRSETD--------PKKMYFDSNVY 167
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S + S D +F RP+ DI + +L PGQ+++L A KG+G HAK+S
Sbjct: 168 S---GMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFS 224
Query: 266 PVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PVATA YR+LP I+L + E +K P V +IE +G+ + V PR T+ R
Sbjct: 225 PVATASYRLLPHIILRGPIPKEHQQKFKGCFPPGVIEIEKDENGEDQCVVKNPRKDTVSR 284
Query: 326 ECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
E LR E++ V + R++DHFIF +ES G SPE L EA+KIL K + V
Sbjct: 285 EVLR-HPEFQDLVQLARIRDHFIFNVESAGQYSPEELVPEAIKILLGKIKDV 335
>gi|429853404|gb|ELA28479.1| DNA-directed RNA polymerases i and iii 40 kda polypeptide
[Colletotrichum gloeosporioides Nara gc5]
Length = 371
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 154/374 (41%), Positives = 200/374 (53%), Gaps = 42/374 (11%)
Query: 29 PPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
P E R R V N + + Y G Y G D+S L+ F NFR++ ++ D
Sbjct: 6 PSQAELDRRRIVGINKETVTDVTSTDYPGTYP--GEDHSWDLEKFAENFRIQFHHNSQHD 63
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
F LIG+DA+IANAFRR LIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP +P
Sbjct: 64 ASFSLIGVDASIANAFRRTLIAEIPTVAIENVYIENNTSVIQDEVLAHRLGLIPFTGNPE 123
Query: 148 -----LFEYMSEND---TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
L Y D S + NT+ +L + C R P+ S +T
Sbjct: 124 GIHNFLKWYRKPEDGGKGSFDYNTVQLRLRIECTRN--------------PDASPNEKDT 169
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSN-NPIRPML-DITIARLGPGQEIELEAHAVKGI 257
N +S F S + FS + IRP+ DI IA+L PGQ IEL+ H KGI
Sbjct: 170 NVAFNHASVYAKDIEFVPSGRQVEFFSGEDAIRPVNPDILIAKLRPGQCIELDMHMHKGI 229
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS- 308
G HAK+SPVATA YR++P I + + +DAEK K P V IE + GS
Sbjct: 230 GADHAKFSPVATASYRLMPTITITRPILGQDAEKFAKCFPKGVIGIEKVTKKEAAVAGSG 289
Query: 309 -----GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
G+K+A V T+ RECLR E++ +V + RV+DHFIF+IESTG + LF
Sbjct: 290 YEGHEGEKKAVVKDAMKDTVSRECLRHA-EFDGKVKLGRVRDHFIFSIESTGQWDSDQLF 348
Query: 364 TEAVKILEDKCERV 377
E+VK + +C R+
Sbjct: 349 LESVKQFKTRCIRL 362
>gi|426193914|gb|EKV43846.1| hypothetical protein AGABI2DRAFT_209410 [Agaricus bisporus var.
bisporus H97]
Length = 357
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/351 (39%), Positives = 199/351 (56%), Gaps = 42/351 (11%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R VQ + + + + G Y G D+S L F RVE+ RL+ +EFDL+G+
Sbjct: 8 RRLVQVGAERVSNVSSTDFPGHYP--GEDHSWNLQDFRRGLRVEIQRLSNRSIEFDLVGV 65
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DA+IANAFRRI+IAE+PT+ IE V I NNTSVI DEVL+HRLGL+P+ VDP L ++ +
Sbjct: 66 DASIANAFRRIMIAEVPTICIELVYIWNNTSVIADEVLSHRLGLVPLNVDPALMQFKANL 125
Query: 156 DTSNEKNTIVFKLHVLCER--GGPRLT-----------VKTNELKWLPNGSELPLETKPD 202
D++ + NTIVF+L + C R G P+++ V + L+W P G +L
Sbjct: 126 DSATDHNTIVFELDITCTRNPGAPKVSENPDELYINHEVLSGHLRWKPAGDQL------- 178
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
T F LP + P+ P +I +A+L PGQ + +E HA+KG+GK HA
Sbjct: 179 ----------TVFEG----LP--APGPMNP--NIVLAKLRPGQSVRMELHAIKGVGKDHA 220
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
K+SPVATA YR+LP I + + + +EK K V I D +G R +
Sbjct: 221 KFSPVATASYRLLPHIKIKKPIPPSLSEKFQKCFSPGVVKI-DSRTGSASVDENNVRKDS 279
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ RE LR E+ V + RV+D+F+F +ES GA +PE L EA+K++ +K
Sbjct: 280 VSREVLRH-PEFVDSVELSRVRDYFLFNVESEGAYTPERLLPEALKVMREK 329
>gi|409077914|gb|EKM78278.1| hypothetical protein AGABI1DRAFT_121405 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 357
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 198/352 (56%), Gaps = 44/352 (12%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R VQ + + + + G Y G D+S L F + RVE+ RL+ +EFDL+G+
Sbjct: 8 RRLVQVGAERVSNVSSTDFPGHYP--GEDHSWNLQEFRRDLRVEIQRLSNRSIEFDLVGV 65
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DA+IANAFRRI+IAE+PT+ IE V I NNTSVI DEVL+HRLGL+P+ VDP L ++ +
Sbjct: 66 DASIANAFRRIMIAEVPTICIELVYIWNNTSVIADEVLSHRLGLVPLNVDPALMQFKANL 125
Query: 156 DTSNEKNTIVFKLHVLCER--GGPRLT-----------VKTNELKWLPNGSELPL-ETKP 201
D++ + NTIVF+L + C R G P+ + V + L+W P G +L + E P
Sbjct: 126 DSATDHNTIVFELDITCTRNPGAPKASENPDELYINHEVLSGHLRWKPAGDQLTVFEGLP 185
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
P+ NP +I +A+L PGQ + +E HA+KG+GK H
Sbjct: 186 APGPT---------------------NP-----NIVLAKLRPGQSVRMELHAIKGVGKDH 219
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AK+SPVATA YR+LP I + + + +EK K V I D +G R
Sbjct: 220 AKFSPVATASYRLLPHIKIKKSIPPSLSEKFQKCFSPGVVKI-DSRTGSASVDENNVRKD 278
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
++ RE LR E+ V + RV+D+F+F +ES GA +PE L EA+K++ +K
Sbjct: 279 SVSREVLRH-PEFVDSVELSRVRDYFLFNVESEGAYTPERLLPEALKVMREK 329
>gi|320582291|gb|EFW96508.1| RNA polymerase III (C) subunit [Ogataea parapolymorpha DL-1]
Length = 335
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 201/353 (56%), Gaps = 41/353 (11%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
+IE R D P ++ N G YA L++F NF++ + LT+ F
Sbjct: 6 NIEHDRVSNTTATDFPGYSAN----GEYA-------WDLENFKKNFQLNISYLTQRTANF 54
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
DL+G+D +IANAFRRI+IAE+P++A E V I NNTSVIQDEVLAHR+GL+P+ VDP +
Sbjct: 55 DLVGLDTSIANAFRRIMIAEVPSVAAEYVYIFNNTSVIQDEVLAHRIGLVPLKVDPDMLT 114
Query: 151 YMSEN----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN---GSELPLETKPDS 203
++ N D ++NTIV L V C + PN G+ P +S
Sbjct: 115 WIDPNAEEEDKFTDENTIVLSLDVACTKN--------------PNAVPGNNDPENLYRNS 160
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHA 262
N ++ F + + +F+N P+ P DI IA+L P QEI L H V GIG HA
Sbjct: 161 NVYARD---LKFEPNGRQVTQFANCPVVPCDPDILIAKLRPNQEISLRVHCVLGIGADHA 217
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
K+SPV+TA YR+LP I +LE + +DA K K P V I+ G+ A VA R T
Sbjct: 218 KFSPVSTASYRLLPTIDILEPITGDDAVKFQKCFPSGVIGIDSNGA----AYVADARKDT 273
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
+ RE LR +E+E +V + R +DHFIF +ESTGA+ PE +F +++++L+ K E
Sbjct: 274 VSREVLR-HKEFEGKVKLGRKRDHFIFNVESTGAMPPEEIFYKSIRVLKTKAE 325
>gi|146412650|ref|XP_001482296.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/349 (39%), Positives = 199/349 (57%), Gaps = 36/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H+ N D+S ++ F +NF + + LT+ FD
Sbjct: 7 IEYNRVTNTTSTDFPGHSSNE-----------DHSWDIEKFKDNFEINISHLTERTANFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID ++ANAFRRI+I+E+P++A E V I NNTSVIQDEVLAHR+GLIP+ VDP L +
Sbjct: 56 LINIDTSVANAFRRIMISEVPSVAAESVYIFNNTSVIQDEVLAHRIGLIPLKVDPDLLSW 115
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E + ++NTIV L + C + P GS P + +++ +
Sbjct: 116 VDPAQDEKEKFTDENTIVLSLDIACTKN-----------PHPPAGSTDPKDLYRNAHVYA 164
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ + DL F NNP+ P DI IA+L PGQEI L AH + GIG HAK+SP
Sbjct: 165 RDLKFEPQGRQVDL---FKNNPVVPTDPDILIAKLRPGQEISLRAHCILGIGSDHAKFSP 221
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
V+TA YR++ +I + E + E A++ K P V IE+ A V R T+ RE
Sbjct: 222 VSTASYRLMSDIKITEPITGELAKRFQKCFPSGVIGIEN-----DTAFVKDARKDTVSRE 276
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR EE+ +V + R++DHFIF +ESTGA+ PE +F ++V++L++K +
Sbjct: 277 VLR-HEEFNGKVKLGRIRDHFIFNVESTGAMPPEEIFFKSVRVLKNKAD 324
>gi|331225845|ref|XP_003325593.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304583|gb|EFP81174.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 359
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 190/321 (59%), Gaps = 17/321 (5%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N+ + F N ++++ RL+ MEFDLIGIDA+IANA RRI++AE+PT+AIE V +
Sbjct: 47 GESNAWDIQTFKKNLKIKICRLSSTSMEFDLIGIDASIANALRRIMLAEVPTVAIEDVFV 106
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTV 181
NNTS++ DEVLA RLGL+P+ +DPRL + M ++ + + NTIVFKL V C R
Sbjct: 107 WNNTSLVHDEVLAQRLGLVPLKIDPRLID-MRTDEGATDLNTIVFKLVVNCRRN------ 159
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIAR 240
+P + PL+ +S +++ + D+ F + P RP+ DI + +
Sbjct: 160 -----PHVPKTEKDPLKLYQNSLVTTEALEWEPKGDQVDM---FGSEPPRPVQNDIVLVK 211
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
+ PGQEI E H VKGI K HAK+SPVATA YR+LP IV+ E + + D K V
Sbjct: 212 MRPGQEIRAEMHCVKGIAKDHAKFSPVATASYRLLPHIVIHEPIPEPDCLKFQSCFSPGV 271
Query: 301 FDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
+I + G K V PR ++ RE LR E+E +V++ RV+DHFIF +ESTG SP+
Sbjct: 272 IEIVNGPKGGKTCKVKNPRNDSVSREVLR-HPEFEGKVTLGRVRDHFIFNVESTGVYSPQ 330
Query: 361 TLFTEAVKILEDKCERVITEL 381
+ EA ++L K V L
Sbjct: 331 EIPLEACEVLLLKIRTVRASL 351
>gi|440635104|gb|ELR05023.1| hypothetical protein GMDG_01594 [Geomyces destructans 20631-21]
Length = 375
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 210/388 (54%), Gaps = 56/388 (14%)
Query: 29 PPHIEFQRTRV-QCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
P E QR +V NL+ + + G YA G D+S LD F N +++ T+ +
Sbjct: 6 PSQEELQRRKVVGINLETVDDVTSTDFPGHYA--GEDHSWDLDLFRKNLKIQFHHNTQFN 63
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
F + GIDA++ANAFRRIL+AE+PT+AIE V + NNTSVIQDEVLAHRLGL+P+ +
Sbjct: 64 ASFSISGIDASVANAFRRILLAEIPTLAIEYVFMNNNTSVIQDEVLAHRLGLVPLKGGRK 123
Query: 148 -LFEYMSENDTSN-----------EKNTIVFKLHVLCERGGPRLTVKTNELKWLPN---- 191
L E+M +N + NTI KL + C R +T+ K N
Sbjct: 124 GLLEFMRWFGKANEEEGTEAGEAFDYNTITLKLQIACTRNPDAAPGETDSNKLYINSAVH 183
Query: 192 GSEL---PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
S++ P+ +P+ F S D + NP DI IA+L PGQ I+
Sbjct: 184 ASDIVFEPVGRQPE------------FFSGDDTIT--VTNP-----DILIAKLRPGQCID 224
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-- 306
L+ HA+KGIG HAK+SPVATA YR+LP I +L+ + DAEK K P V E +
Sbjct: 225 LDMHAIKGIGADHAKFSPVATASYRLLPTITILKPILGNDAEKFAKCFPKGVIGFEKVTK 284
Query: 307 ------GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIEST 354
GS G+K+A V T+ RECLR EE++ +V + R++DHFIF+IEST
Sbjct: 285 EEASTPGSGYEGHAGEKKAVVKDTMKDTVSRECLRH-EEFQGKVKLGRIRDHFIFSIEST 343
Query: 355 GALSPETLFTEAVKILEDKCERVITELS 382
G + LF E++K L+ KC R LS
Sbjct: 344 GQWDSDELFLESIKALKQKCVRFKRNLS 371
>gi|295663793|ref|XP_002792449.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279119|gb|EEH34685.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 380
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 201/347 (57%), Gaps = 39/347 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G ++ ++ F NN V + + F LIG+DA+IANAFRRILIAE+P++AIE V I
Sbjct: 38 GENHEWSIEKFRNNLIVTFHKNEPYEASFSLIGVDASIANAFRRILIAEIPSLAIETVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDP------RLFEYMSENDTSN-----EKNTIVFKLHV 170
NNTSVIQDEVLAHRLGL+P+ P R F +E D S+ + NTIV L+V
Sbjct: 98 HNNTSVIQDEVLAHRLGLVPLTGSPEGINWLRWFRQPNEGDPSSGSELADYNTIVLHLNV 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C++ P+ + NEL PL+ ++ +K T+ + PE + I
Sbjct: 158 ECKK-NPKAS--PNELD--------PLKLYSHAHVYAKDITFQPVGRQEAYFPE-PDGGI 205
Query: 231 RPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
RP DI +A+L PGQ+I++E H VKGIG HAK+SPVATA YR+LP+I +L + DA
Sbjct: 206 RPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGMDA 265
Query: 290 EKLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWE 335
K P V IE + GS G K+A V P T+ RECLR EE++
Sbjct: 266 VKFAGCFPEGVIGIETVTAEEASQRGSGYEGHEGAKKAVVLDPFKDTVSRECLRH-EEFQ 324
Query: 336 KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+V + R++DHFIF +ESTG + LF E+VK+L+ KC ++ +L+
Sbjct: 325 GKVKLGRIRDHFIFNVESTGQFRSDVLFLESVKVLKLKCRKLKRDLA 371
>gi|342319511|gb|EGU11459.1| Hypothetical Protein RTG_02619 [Rhodotorula glutinis ATCC 204091]
Length = 785
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 152/360 (42%), Positives = 199/360 (55%), Gaps = 35/360 (9%)
Query: 28 LPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
+P H R V+ + E+V + G + G + LDHF +N RV+V L+
Sbjct: 31 MPAHTPADRNLVRIGKE---RVESVHFPGHHP--GESHHWDLDHFRSNLRVQVNSLSPTA 85
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFDL+G+DA++ANA RRI+IAE+PT+A+E V + NNTS+IQDEVLA RLGLIP+ +DPR
Sbjct: 86 LEFDLVGVDASVANAIRRIVIAEVPTVAVENVYVWNNTSIIQDEVLAQRLGLIPLAIDPR 145
Query: 148 LFEYMSEND-TSNEKNTIVFKLHVLCERGGPRLTVKTNELK----WLPNGSELPLETKPD 202
+ D + NT+VF L CER R VK E W +G E+
Sbjct: 146 KLDMKKTPDEPPTDLNTVVFSLIARCER---RKDVKKGETDPHKIW--SGVEV-----LS 195
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTH 261
SN S R QD L F + P +P + DI +A++ GQEI E H VKGIGK H
Sbjct: 196 SNLSFSSR------GGQDEL--FGDRPPKPAIDDILVAKMRGGQEIVAELHCVKGIGKDH 247
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AKWSPVATA YR+LP I +L D+ E K P V I R VA R
Sbjct: 248 AKWSPVATASYRLLPTIDILADIPPELHSKFEACFPPGV-----IEQRSGRLVVANARRD 302
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
T+ RE LR E+E +V + RV+DHFIF++ES G PE L EA+++L K T L
Sbjct: 303 TVSREVLRH-PEFEDKVKLGRVRDHFIFSVESAGQYRPEELVPEAIEVLLAKIRACATRL 361
>gi|390597050|gb|EIN06450.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 379
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 186/326 (57%), Gaps = 10/326 (3%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y ++S L F N +V+V RL++ +EFDL+G+DA+IANA RRILIAE+PT
Sbjct: 32 FPGHYPGKEEEHSWDLARFKKNLQVKVTRLSQRSVEFDLVGVDASIANAIRRILIAEVPT 91
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS--ENDTSNEKNTIVFKLHVL 171
+AIE V + NNTSVI DEVL+HRLGL+P+ VDP L + +D + ++NTIVF+LHV
Sbjct: 92 IAIEHVYVWNNTSVIVDEVLSHRLGLVPLNVDPALLDERDPPPDDQATDRNTIVFRLHVA 151
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR 231
CER K + P + P E + S + P P
Sbjct: 152 CERKKKDSKAKGKGKEPQPVEEQHPDELYVNHEVLSGQLEWVPQGDQASYEPFIKKRPAP 211
Query: 232 PMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDA 289
DI +A+L PGQEIE+E HAVK +GK HAK+ PVATA YR+LP I+L D V E A
Sbjct: 212 TNPDIVLAKLRPGQEIEMELHAVKSVGKDHAKFCPVATASYRLLPHIILNPDKPVPPEYA 271
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQP--RACTLCRECLRCGEEWEKRVSIRRVKDHF 347
EK K V ++ K +V Q R T+ RE R E+E V +RRV+D+F
Sbjct: 272 EKFQKCFAPGVIKVD---PKTKAVSVDQKNVRKETMSREVFR-HPEFEGCVDLRRVRDYF 327
Query: 348 IFTIESTGALSPETLFTEAVKILEDK 373
+F IES GA P+ L EAV ++ K
Sbjct: 328 LFNIESEGAYEPQRLMHEAVSVMRSK 353
>gi|378727237|gb|EHY53696.1| DNA-directed RNA Polymerase III subunit C5 [Exophiala dermatitidis
NIH/UT8656]
Length = 373
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 201/380 (52%), Gaps = 57/380 (15%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G +A G DNS L F +N +V+ + D+ F LIG
Sbjct: 13 RRKLVGINPETVTNITSTDFPGHHA--GEDNSWSLPKFKDNLKVQFHQNEADEATFSLIG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI------------ 142
+DAAIANAFRRILIAE+PT+AIEKV + NNTSVI DEVLAHRLGLIP+
Sbjct: 71 VDAAIANAFRRILIAEVPTLAIEKVYVQNNTSVIADEVLAHRLGLIPLKGNIEGLKWLKW 130
Query: 143 IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
+D E+ E + NT+V LHV CER P K
Sbjct: 131 FIDSNP-EFGFEGTGRADYNTVVLHLHVRCERN--------------------PHADKNA 169
Query: 203 SNPSSKPRTYTSFSSSQDLLPE------FSNNPIRPML-DITIARLGPGQEIELEAHAVK 255
+ P K T +S P+ F + PI P+ DI IA+L PGQEI++ HA
Sbjct: 170 TEPEEKYINSTVYSRHIQWEPQGQQQERFKDGPIEPVSPDILIAKLRPGQEIDMVLHAHL 229
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG-------- 307
GIG HAK+SPVATA YR++P I + + + DA K K P V D++ +
Sbjct: 230 GIGADHAKFSPVATATYRLMPTITITKPILGADARKFQKCFPPGVIDLDRVTPSDAASDN 289
Query: 308 ------SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
G ++A V P T+ RECLR +E++ +V + RV+DHFIF +ESTG +
Sbjct: 290 PAYHGREGDEKAVVKDPMRDTVSRECLRH-DEFKDKVKLGRVQDHFIFNVESTGQFPSDM 348
Query: 362 LFTEAVKILEDKCERVITEL 381
LF E+V +L+ K +R++ L
Sbjct: 349 LFLESVNVLKYKAKRLLRAL 368
>gi|448091116|ref|XP_004197249.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|448095598|ref|XP_004198280.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359378671|emb|CCE84930.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359379702|emb|CCE83899.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
Length = 335
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 135/349 (38%), Positives = 197/349 (56%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E+ R + D P ++ N YS ++ F + F + + +++ FD
Sbjct: 8 VEYNRVTNTSSTDFPGYSSNADYS-----------WNIEKFKDTFDINISHISERSANFD 56
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+ +D +IANAFRRI+IAE+P++A E++ I NNTSVIQDEVLAHR+GL+P+ VDP L +
Sbjct: 57 LVHVDTSIANAFRRIMIAEVPSVAAEQIYIFNNTSVIQDEVLAHRIGLVPLKVDPDLLSW 116
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E D ++NTIV L V C + P GS P E +S+ +
Sbjct: 117 VDPTVDEKDRFTDENTIVLSLDVSCSKN-----------PHAPQGSTDPKELYRNSHVYA 165
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + ++ F NNP+ P +I +A+L PGQEI L AH + GIG HAK+SP
Sbjct: 166 KDLKFEPQGRQVEI---FKNNPVVPTDPNILLAKLRPGQEISLRAHCILGIGSDHAKFSP 222
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR++P I + E ++ E A+K K P V I + G A V PR T+ RE
Sbjct: 223 VATATYRLMPVIDITEPIKGEQAKKFQKCFPSGVIGINEEG----EAFVKDPRKDTVSRE 278
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR E+ +V + R +DHFIF +EST A+ PE +F ++V+IL++K E
Sbjct: 279 VLR-HEDLSNKVKLGRKRDHFIFNVESTSAMPPEEIFFKSVRILKNKAE 326
>gi|50418823|ref|XP_457932.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
gi|49653598|emb|CAG85988.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
Length = 335
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 195/349 (55%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H+ N G +A ++ F ++F + + L++ FD
Sbjct: 8 IEYNRVTNTSSTDFPGHSSN----GDFA-------WDIEKFKDSFEINISHLSERSSTFD 56
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+I+E+P++A E V + NNTSVIQDEVLAHR+GLIP+ VDP +
Sbjct: 57 LIHIDTSIANAFRRIMISEVPSVAAETVYVFNNTSVIQDEVLAHRIGLIPLKVDPDTLTW 116
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E D ++NTIV L V C + P GS P E +S+ +
Sbjct: 117 IDTAQDEKDRFTDENTIVMSLDVSCTKN-----------PHPPQGSTDPKELYRNSHVYA 165
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K F L F NNP+ DI +A+L P QEI L AH + G+G HAK+SP
Sbjct: 166 KD---LKFEPQGRQLEIFKNNPVVAADPDILLAKLRPNQEISLRAHCILGVGSDHAKFSP 222
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR++P I + E ++ E ++ K P V DI G A V R T+ RE
Sbjct: 223 VATASYRLMPVITITEPIKGESGKRFQKCFPSGVIDINKNG----EAVVKDSRKDTVSRE 278
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR EE+ +V + R +DHFIF +ESTGA+SPE +F ++V++L++K E
Sbjct: 279 VLR-HEEFNGKVKLGRKRDHFIFNVESTGAMSPEEIFFKSVRVLKNKAE 326
>gi|363752191|ref|XP_003646312.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889947|gb|AET39495.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
Length = 334
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 199/349 (57%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P ++ N D S ++ F + V++ L + FD
Sbjct: 7 IEYNRVTNTTSTDFPGYSHNE-----------DFSWDVNKFRDTMDVQISHLDDREANFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI IDA+IANAFRRI+I+E+P++A E V NNTSVIQDEVLAHR+GL+P+ VDP + +
Sbjct: 56 LIHIDASIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTW 115
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E + ++NT+V L+V C P P GS P E +++ S
Sbjct: 116 VDKSLPEAERFTDENTVVMSLNVKCT-ANPD----------APKGSTDPKELYNNAHIYS 164
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ F L F+ +P+ P DI +A+L PGQEI L H + G+G HAK+SP
Sbjct: 165 RD---LKFEPQGKQLDSFAKHPVLPTDPDILLAKLRPGQEISLRVHCILGVGGDHAKFSP 221
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
V TA YR++P I +LE ++ EDA K VK P V I++ G A + R T+ RE
Sbjct: 222 VCTASYRLMPHIDILETIQGEDATKFVKCFPPGVAAIDEKG----EAYIKDARKDTVSRE 277
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR E+E +V + RVKDHFIF +ESTGA++PE +F ++V+IL++K E
Sbjct: 278 VLR-HPEFEGKVKLGRVKDHFIFNVESTGAMTPEEIFFKSVRILKNKAE 325
>gi|380022855|ref|XP_003695251.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1-like [Apis florea]
Length = 587
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 194/324 (59%), Gaps = 25/324 (7%)
Query: 69 LDHFCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
L +F F+++VIR ++D+ +EFDLIG ANAFRR+L++E+PTMAIEKV I NNTS
Sbjct: 33 LHNFKKEFKIQVIRESEDNRELEFDLIGYPVGFANAFRRVLLSEVPTMAIEKVYIVNNTS 92
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLC--ERGGPRLT 180
+IQDEVLAHRLGLIP+ DPRLFEY S + D ++++T+ ++L + C P+ +
Sbjct: 93 LIQDEVLAHRLGLIPLRADPRLFEYPSSTAKDQDEVSDQDTLRYELKISCTWNSQAPKDS 152
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIAR 240
+TN++ +SN S+ + +L P + DI I +
Sbjct: 153 RRTNDM-------------YRNSNVYSRDIKWVPIGHQAELYPRGTEQLGVLENDILICK 199
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
+ PGQEI HAVKGIGK HAK+SPVATA YR+LP+I +++ V+ E A++L + V
Sbjct: 200 MRPGQEIHAFMHAVKGIGKDHAKFSPVATASYRLLPDIQIIKPVKGEMADRLKNCFSIGV 259
Query: 301 FDIEDIGSG---KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
++ + G + A V PR + R + E+ + + + R+++H IFTIES G L
Sbjct: 260 IEVIENKPGDPDSREARVKNPRYDSCSRNVFQ-HEDLKGCIRLSRIRNHIIFTIESVGTL 318
Query: 358 SPETLFTEAVKILEDKCERVITEL 381
P LF EA+KIL+ KC+ + EL
Sbjct: 319 LPSVLFVEAIKILKGKCKTFLEEL 342
>gi|335774431|gb|AEH58393.1| DNA-directed RNA polymerases I and III subuni RPAC1-like protein,
partial [Equus caballus]
Length = 267
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/261 (46%), Positives = 171/261 (65%), Gaps = 18/261 (6%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ DHF NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDHFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F+L V C R P +++ P E + ++ + + DL PE
Sbjct: 140 FRLQVRCTR-NPHAAKDSSD----------PSELYVNHKVYTRHMIWVPLGNQADLFPEG 188
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE
Sbjct: 189 TIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVE 246
Query: 286 DEDAEKLVKTCPVNVFDIEDI 306
+ AE+L + V +++++
Sbjct: 247 GDAAEELSRCFSPGVIEVQEV 267
>gi|37935546|gb|AAP69818.1| RNA polymerase subunit I [Bos taurus]
Length = 250
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/263 (48%), Positives = 171/263 (65%), Gaps = 16/263 (6%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ ++ +EFD++GIDAAIANAFRRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI
Sbjct: 3 MDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI 62
Query: 143 IVDPRLFEYMSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
DPRLFEY ++ D E +T+ F+L V C R P +++ P E
Sbjct: 63 HADPRLFEYRNQGDEGGTEIDTLQFRLQVRCTR-NPHAAKDSSD----------PNELYV 111
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
+ ++ T+ + DL PE + P+ DI IA+L PGQEI+L H VKGIGK H
Sbjct: 112 NHRVYTRHMTWVPLGNQADLFPEGAIRPVHD--DILIAQLRPGQEIDLLMHCVKGIGKDH 169
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AK+SPVATA YR+LP+I LLE VE E AE+L + V ++++I GKK A VA PR
Sbjct: 170 AKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLD 228
Query: 322 TLCRECLRCGEEWEKRVSIRRVK 344
T RE R E+ +K V + RV+
Sbjct: 229 TFSREVFR-NEKLKKVVRLARVR 250
>gi|321257697|ref|XP_003193678.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
gi|317460148|gb|ADV21891.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
Length = 350
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 184/338 (54%), Gaps = 43/338 (12%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y G D+S L F + V RLT +EFDL+G+DA+IANA RR LIAE+PT
Sbjct: 27 FPGHYP--GEDHSWNLQKFKQDLVTSVQRLTPSTIEFDLVGVDASIANALRRTLIAEVPT 84
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLC 172
+AIE+V + NNTS++QDEVL HR+GL+P+ +DPR Y S N +E +T+VF L V C
Sbjct: 85 VAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDPRSLRYRPSANSQPHEHDTVVFDLRVRC 144
Query: 173 ER--------GGPRL-----TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
+R P+ V + LKW+P+G + P +
Sbjct: 145 DRRPNVDRSEKDPKKMYFDSNVYSGMLKWVPSGDQKKKFKGKAPKPVND----------- 193
Query: 220 DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
DI + +L PGQ+++L A KG+G HAK+SPVATA YR+LP I+
Sbjct: 194 ---------------DILLVKLRPGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHII 238
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVS 339
L + E +K P V +IE SG+ + V PR T+ RE LR E++ V
Sbjct: 239 LRGPIPKEHQQKFKGCFPPGVIEIEKDESGEDQCVVKNPRKDTVSREVLR-HPEFQDIVQ 297
Query: 340 IRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+ R++DHFIF +ES G SPE L EA+KIL K + V
Sbjct: 298 LARIRDHFIFNVESAGQYSPEELVPEAIKILLGKIKDV 335
>gi|195437356|ref|XP_002066606.1| GK24584 [Drosophila willistoni]
gi|194162691|gb|EDW77592.1| GK24584 [Drosophila willistoni]
Length = 332
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 186/333 (55%), Gaps = 46/333 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D +D F +V ++R ++ +EFDLIG+ AIANAFRR++++E+P+MAIEKV I N
Sbjct: 28 DEVFNIDIFKQKLKVTIVRNDEEGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGG----- 176
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E N E++T+ ++L V C R
Sbjct: 88 NTSIIQDEVLAHRMGLLPLKADPRLFTYRTEESPENGTEQDTLEYELKVKCTRRKDASKD 147
Query: 177 --------PRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
V + LKWLP G + + T+ SS + E
Sbjct: 148 QSTFDEIYKNHKVFSGHLKWLPKGKQGQIYTE----------------SSVGCIHE---- 187
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
DI IA+L PG E++L AVKG+GK HAK+SPVATA+YR+LP I L +V +D
Sbjct: 188 ------DILIAQLRPGHEMDLRLIAVKGLGKDHAKFSPVATAYYRLLPLIKLNREVSGKD 241
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R + R R V++ RV+DH+I
Sbjct: 242 AYLLQSCFSPGVIGIDE----NENAYVKDARYDSGSRNVYRYS-HLADAVTLARVRDHYI 296
Query: 349 FTIESTGALSPETLFTEAVKILEDKCERVITEL 381
FT+ES GAL PE +F EAVK+L+ KC I E+
Sbjct: 297 FTVESVGALKPEVIFIEAVKVLKKKCRSFIDEI 329
>gi|322783207|gb|EFZ10793.1| hypothetical protein SINV_03179 [Solenopsis invicta]
Length = 344
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 186/332 (56%), Gaps = 20/332 (6%)
Query: 58 YASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIE 117
Y D S L+ N ++ +++ ++EFD+IG ++ANAFRRIL++E+PTMAIE
Sbjct: 20 YTYNTSDKSTALEKLVKNLKINIVQEQDREIEFDIIGCHTSLANAFRRILLSEVPTMAIE 79
Query: 118 KVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN----DTSNEKNTIVFKLHVLCE 173
KV I NNTS++QDE+LAHRLGLIP+ DPRLFEY N D ++++T+ ++L V C
Sbjct: 80 KVYIVNNTSLLQDEILAHRLGLIPLRADPRLFEYPPSNARADDEISDQDTLRYELKVTC- 138
Query: 174 RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
TV P S P + +S SK + ++ P +
Sbjct: 139 ------TVNPQA----PKNSHNPEDMYKNSKVYSKDIKWVPIGQQGEMFPRGAEEFGVLE 188
Query: 234 LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
DI + ++ PG EI L HA+K IGK HAK+SPVATA YR+LP I L + V D+DA+ L
Sbjct: 189 NDILLCKMRPGHEIHLFMHAIKSIGKDHAKFSPVATASYRLLPAIRLTKPVRDKDADLLQ 248
Query: 294 KTCPVNVFDI----EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIF 349
V +I + G + A V R + R R ++ + V + RVKDHFIF
Sbjct: 249 SCFSPGVIEIVEQETNTGQKYREARVKNARYDSCSRNVHRY-DQLKNCVELSRVKDHFIF 307
Query: 350 TIESTGALSPETLFTEAVKILEDKCERVITEL 381
TIES G L P LF EAVK+L++KC + EL
Sbjct: 308 TIESVGILPPAVLFAEAVKVLKNKCRTFLAEL 339
>gi|344303022|gb|EGW33296.1| RNA polymerase III (C) subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 335
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 142/349 (40%), Positives = 192/349 (55%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H SG D S ++ F NF +++ LT+ FD
Sbjct: 8 IEYNRVTNTSSTDFPGHQA----SG-------DFSWDIEKFKQNFDIDIKYLTERTANFD 56
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+ ID +IANAFRRI+IAE+P++A E V + NTSVIQDEVLAHR+GLIP+ VDP L +
Sbjct: 57 LVHIDTSIANAFRRIMIAEVPSVAAEAVYMFMNTSVIQDEVLAHRIGLIPLKVDPDLLSW 116
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ EN+ E NTIV L V+C + PN + K S
Sbjct: 117 VDKTQDENNRYTEDNTIVLSLDVVCTKN--------------PNAPKNSTNAKELYRNSH 162
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ F L +F NNP+ P +I +A+L PGQEI L AH + GIG HAK+SP
Sbjct: 163 VYASDLKFEPHGSQLEKFKNNPVVPADPNILLAKLRPGQEISLRAHCILGIGSDHAKFSP 222
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR++P I + E + A K P V I D G A V R T+ RE
Sbjct: 223 VATASYRLMPVIDIREPITGALAVNFQKCFPPGVIGINDQG----EAYVQDARKDTVSRE 278
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR EE++ +V + R +DHFIF +ESTGA+SPE +F ++V++L++K E
Sbjct: 279 VLR-HEEFDGKVKLGRKRDHFIFNVESTGAMSPEEIFFKSVRVLKNKVE 326
>gi|328851366|gb|EGG00521.1| hypothetical protein MELLADRAFT_111755 [Melampsora larici-populina
98AG31]
Length = 359
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 180/321 (56%), Gaps = 17/321 (5%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N+ L F N +++ RL+ MEFDL+G+DA+IANA RRI+IAE+P++AIE V +
Sbjct: 47 GESNAWDLSEFKKNLNIKISRLSSSAMEFDLVGVDASIANALRRIMIAEVPSIAIEDVFV 106
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTV 181
NNTS++ DEVLA RLGLIP+ VDPR + M + + + NT+VFKL C R
Sbjct: 107 WNNTSLVHDEVLAQRLGLIPLKVDPRKLD-MRGPEGATDMNTLVFKLVARCSRN------ 159
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIAR 240
PN S+ + S Y + D F + P + + DI + +
Sbjct: 160 --------PNVSKTEKDPSILYTDSDVTSGYLDWQPKGDQPALFGSQPPKAVQDDILLVK 211
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
+ PGQEI +E H VKGIGK HAK+SPVATA YR+LP I++ E + + EK V
Sbjct: 212 MRPGQEISIEMHCVKGIGKDHAKFSPVATASYRLLPHIIIHEPILEPHCEKFTSCFAQGV 271
Query: 301 FDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
+I G+K V PR T+ RE LR E+E +VS+ RV+DHFIF +ES+G PE
Sbjct: 272 IEIVKNQHGQKECKVLNPRKDTVSREVLR-HPEFEGKVSLGRVRDHFIFNVESSGVYRPE 330
Query: 361 TLFTEAVKILEDKCERVITEL 381
L EA +L K V L
Sbjct: 331 ELPIEACLVLLQKIRSVRVAL 351
>gi|170033286|ref|XP_001844509.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
gi|167873916|gb|EDS37299.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
Length = 335
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 187/332 (56%), Gaps = 45/332 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ + F ++ V+R ++++EFD+IG+ AIANAFRR++++E+P+MAIEKV I N
Sbjct: 32 DDFWDFERFKRQLQIVVVRYEENELEFDMIGVSPAIANAFRRLMLSEVPSMAIEKVHIYN 91
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMS-ENDTSNEKNTIVFKLHVLCERGGPRLTVK 182
NTS+IQDEVLAHRLGLIP+ DPRLFEY + E D +N ++T+ F+L V C + T
Sbjct: 92 NTSIIQDEVLAHRLGLIPLKADPRLFEYKTNEGDAANAQDTLEFELKVKCTKKNKDSTEV 151
Query: 183 TN-------------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP 229
TN ++KW+P G++ + + D P
Sbjct: 152 TNNDSMYKNHSIYSGQIKWVPVGNQASIYKEADVGPIDD--------------------- 190
Query: 230 IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
DI I+R+ PG E +++ AVKG+GK HAK+SPVATA YR+LPEI L V A
Sbjct: 191 -----DILISRMRPGHEFDIKLFAVKGVGKDHAKFSPVATASYRLLPEIHLKRPVVGNQA 245
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIF 349
L K V +I+ +A V R + R R + V++ RV++HFIF
Sbjct: 246 LLLQKCFSPGVIEID----KDDQAYVKDARYDSCSRNVYRY-PQLADSVTMSRVRNHFIF 300
Query: 350 TIESTGALSPETLFTEAVKILEDKCERVITEL 381
+ES GAL P+ +F EA K+L+ KC+ + E+
Sbjct: 301 NVESLGALKPDAIFVEAAKVLKKKCKMFLDEI 332
>gi|242819534|ref|XP_002487338.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
gi|218713803|gb|EED13227.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
Length = 373
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 147/346 (42%), Positives = 197/346 (56%), Gaps = 39/346 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + +++F NNFRV+ + D F L+G+DA+IANAFRRILIAE+PT+A+E V I
Sbjct: 38 GESHEWSVENFQNNFRVDFHKNEPLDASFSLVGLDASIANAFRRILIAEVPTLAVEYVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM------SENDTSNEK----NTIVFKLHVL 171
NNTSVIQDEVLA RLGLIP+ +M +E D + NT+V +L+V
Sbjct: 98 INNTSVIQDEVLASRLGLIPLKGSIEGLNWMQWFKKPTEEDPKGSEPSDFNTVVLRLNVE 157
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPI 230
C NE P G+E P +++ ++ T+ + + P+
Sbjct: 158 C---------SVNEKA--PPGAEDPRIRYHNAHIYARDITFHPQGRQTNYFTGDGEIQPV 206
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
P DI IA+L PGQ IELE H VKGIG HAK+SPVATA YR+LPEI +L + EDA+
Sbjct: 207 NP--DILIAKLRPGQVIELEMHCVKGIGADHAKFSPVATATYRLLPEIRILRPIIGEDAK 264
Query: 291 KLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWEK 336
K K P V E I GS G+ +A V P T+ RECLR +E++
Sbjct: 265 KFAKCFPKGVIGFEKITPAEAAQKGSGYEGHTGEDKAVVVDPFKDTVSRECLR-HDEFKD 323
Query: 337 RVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+V + RV+DHFIF IESTG +TLF E+V +L+ KC R+ EL+
Sbjct: 324 KVKLGRVRDHFIFNIESTGQFPSDTLFLESVTVLKLKCLRLKRELT 369
>gi|225677934|gb|EEH16218.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb03]
Length = 345
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 190/322 (59%), Gaps = 39/322 (12%)
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+DA+IANAFRRILIAE+P++AIE V I NNTSVIQDEVLAHRLGL+P+ P
Sbjct: 28 EASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSP 87
Query: 147 ------RLFEYMSENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R F +E D S+ + NTIV L+V C++ P+ + +
Sbjct: 88 EGINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVKCKK-NPKASPDEQD---------- 136
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAV 254
PL+ ++ +K T+ + PE + IRP DI +A+L PGQ+I++E H V
Sbjct: 137 PLKLYSHAHVYAKDITFQPVGRQEAYFPE-PDGGIRPTNPDILLAKLRPGQKIDIEMHCV 195
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-------- 306
KGIG HAK+SPVATA YR+LP+I +L + +DA K P V IE +
Sbjct: 196 KGIGADHAKFSPVATASYRLLPDIRILRPILGKDAVKFAGCFPEGVIGIETVTAEEASQR 255
Query: 307 GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
GS G K+A V P T+ RECLR EE++ +V + R++DHFIF +ESTG +
Sbjct: 256 GSGYEGHEGAKKAVVLDPFKDTVSRECLR-HEEFQGKVKLGRIRDHFIFNVESTGQFRSD 314
Query: 361 TLFTEAVKILEDKCERVITELS 382
LF E+VK+L+ KC ++ +L+
Sbjct: 315 VLFLESVKVLKLKCRKLKRDLA 336
>gi|443923219|gb|ELU42493.1| ribonuclease H [Rhizoctonia solani AG-1 IA]
Length = 1023
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 182/310 (58%), Gaps = 17/310 (5%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
L HF VEV + ++FDL+G+DA+IANAFRRILIAE+PT+AIE V I NNTSVI
Sbjct: 717 LPHF-QRLHVEVRGADDEAVDFDLVGVDASIANAFRRILIAEVPTVAIENVYIWNNTSVI 775
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
QDEVLAHRLGL+PI DP L ++ ++NT+VFKL V C R
Sbjct: 776 QDEVLAHRLGLVPIRADPALLDFPDSAVGPTDRNTLVFKLSVTCSRN-----------PG 824
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEI 247
+P P ++N S + ++ + + +F NNP RP I +A+L PGQE+
Sbjct: 825 VPKDETDPAVLYKNANVLSG---HMEWNGVGEQVNDFGNNPPRPHNPKILLAKLRPGQEL 881
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
E+E H VKG+G+ HAK+SPVATA YR++P ++ + + +K V P VF +E
Sbjct: 882 EMELHCVKGVGQDHAKFSPVATASYRLMPHVIFRQPIPPHLCDKFVSCFPSGVFAVEQGA 941
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+G+K+ R T+ RE LR +E+E + + R++D F+F IES+G++ L AV
Sbjct: 942 NGQKKVVAKDMRKDTVSREVLR-HKEFEGMIELTRIRDFFMFRIESSGSIPAPNLMPMAV 1000
Query: 368 KILEDKCERV 377
++ K ++
Sbjct: 1001 DVMRQKISKL 1010
>gi|226287322|gb|EEH42835.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb18]
Length = 380
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 198/347 (57%), Gaps = 39/347 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G ++ ++ F NN V + + F LIG+DA+IANAFRRILI+E+P++AIE V I
Sbjct: 38 GENHEWSIEKFRNNLIVTFHKNEPYEASFSLIGVDASIANAFRRILISEIPSLAIETVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDP------RLFEYMSENDTSN-----EKNTIVFKLHV 170
NNTSVIQDEVLAHRLGL+P+ P R F +E D S+ + NTIV L+V
Sbjct: 98 HNNTSVIQDEVLAHRLGLVPLTGSPEGINWLRWFRQPNEGDPSSGSELADYNTIVLHLNV 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C++ P+ + + PL+ ++ +K T+ + PE + I
Sbjct: 158 ECKK-NPKASPDEQD----------PLKLYSHAHVYAKDITFQPVGRQEAYFPE-PDGGI 205
Query: 231 RPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
RP DI +A+L PGQ+I++E H VKGIG HAK+SPVATA YR+LP+I +L + DA
Sbjct: 206 RPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGMDA 265
Query: 290 EKLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWE 335
K P V IE + GS G K+A V P T+ RECLR EE+
Sbjct: 266 VKFAGCFPEGVIGIETVTAEEASQRGSGYEGHEGAKKAVVLDPFKDTVSRECLRH-EEFR 324
Query: 336 KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+V + R++DHFIF +ESTG + LF E+VK+L+ KC ++ +L+
Sbjct: 325 GKVKLGRIRDHFIFNVESTGQFRSDVLFLESVKVLKLKCRKLKRDLA 371
>gi|190408037|gb|EDV11302.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Saccharomyces cerevisiae RM11-1a]
gi|207340297|gb|EDZ68691.1| YPR110Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259150260|emb|CAY87063.1| Rpc40p [Saccharomyces cerevisiae EC1118]
gi|323331346|gb|EGA72764.1| Rpc40p [Saccharomyces cerevisiae AWRI796]
Length = 335
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 191/323 (59%), Gaps = 27/323 (8%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 --GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
P+ + EL + L+ +P S+ F++ P+ P
Sbjct: 144 PDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT----------------FADCPVVPA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A +
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
K P V I++ G A V R T+ RE LR EE+ +V + RV++HFIF +E
Sbjct: 248 QKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFIFNVE 303
Query: 353 STGALSPETLFTEAVKILEDKCE 375
S+GA++PE +F ++V+IL++K E
Sbjct: 304 SSGAMTPEEIFFKSVRILKNKAE 326
>gi|326915378|ref|XP_003203995.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Meleagris gallopavo]
Length = 266
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 128/275 (46%), Positives = 172/275 (62%), Gaps = 16/275 (5%)
Query: 108 IAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT-SNEKNTIVF 166
+ E+PTMA+EKV + NNTS++QDE+LAHRLGLIPI DPRLFEY ++ D E +T+ F
Sbjct: 1 LPEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEEGTEIDTLQF 60
Query: 167 KLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
+L + C R P+ ++++ P E + SK T+ + DL P+
Sbjct: 61 QLKIKCSRN-PQAAKESSD----------PNELYFNHKVYSKHMTWVPLGNQTDLFPDAD 109
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I LL+ +ED
Sbjct: 110 FRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIED 167
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
E AE L K V +I++I GKK A VA R T RE R E + V + RV++H
Sbjct: 168 EAAETLQKCFSPGVIEIQNI-KGKKVARVANARLDTFSREVFR-HEGLKNLVRLARVRNH 225
Query: 347 FIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+IF++ESTG L P+ L TEA+KIL KC+R + EL
Sbjct: 226 YIFSVESTGILPPDVLVTEAIKILMGKCQRFLNEL 260
>gi|125984360|ref|XP_001355944.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
gi|54644262|gb|EAL33003.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 188/333 (56%), Gaps = 46/333 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ ++ F +V ++R +D +EFD+IG+ AIANAFRR++++E+P+MAIEKV I N
Sbjct: 29 DDVFNMEVFKKKLQVAIVRNDEDGLEFDMIGVYPAIANAFRRLMLSEVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGG----- 176
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E + E++T+ ++L V C R
Sbjct: 89 NTSIIQDEVLAHRMGLLPLKADPRLFAYRTEESGEAGTEQDTLEYELKVKCTRRKDASKD 148
Query: 177 --------PRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
V + LKWLP G + + ++ N +
Sbjct: 149 QSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESMVNCIHE-------------------- 188
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
DI IA+L PG E++L AVKG+GK HAK+SPVATA+YR+LP+I L +V +D
Sbjct: 189 ------DILIAQLRPGHELDLRLVAVKGLGKDHAKFSPVATAYYRLLPQIKLNREVYGKD 242
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R + R R + E V++ RV+DH+I
Sbjct: 243 AYLLQSCFSPGVIGIDE----NECAYVKDARYDSCSRNVYRY-PQLEDSVTLGRVRDHYI 297
Query: 349 FTIESTGALSPETLFTEAVKILEDKCERVITEL 381
FT+ES G+L P+ +F EAVK+L+ KC I E+
Sbjct: 298 FTVESVGSLKPDVIFLEAVKVLKKKCRAFIDEI 330
>gi|134056600|emb|CAK47675.1| unnamed protein product [Aspergillus niger]
Length = 359
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 194/331 (58%), Gaps = 35/331 (10%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + L F N+ +++ R + + F LIG+DA+IANAFRRIL+AE+P++AIE V +
Sbjct: 38 GESHEWSLAKFKNDLKIDFHRNERFESSFSLIGVDASIANAFRRILMAEVPSIAIEYVFV 97
Query: 122 ANNTSVIQDEVLAHRLGLIPI------IVDPRLFEYMSENDTSN----EKNTIVFKLHVL 171
NNTSVIQDEVLA RLGLIP+ I R F+ +++D + + NTIV +L V
Sbjct: 98 HNNTSVIQDEVLAQRLGLIPLKGSVEGINWMRWFKKPTDDDPNGSSPADYNTIVLRLDVE 157
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFS 226
C + PN P ET P +++ +K T+ +
Sbjct: 158 CTKN--------------PNAD--PEETDPRKLYKNAHVYAKDITFHPVGRQEQFFA--G 199
Query: 227 NNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
++ I+P+ DI +A+L PGQ IE+E H +KGIG HAK+SPVATA YR+LP+I +L +
Sbjct: 200 DDAIQPVNPDILVAKLRPGQAIEMELHCIKGIGADHAKFSPVATATYRLLPDIKILRPII 259
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+DA+K K P V +E G+ +A V P T+ RECLR EE++ +V + RV+D
Sbjct: 260 GDDAKKFAKCFPSGVIGLEKGHEGELKAVVVDPFKDTVSRECLR-HEEFQGKVKLGRVRD 318
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCER 376
HFIF IES G +TLF E+VK+L+ KC R
Sbjct: 319 HFIFNIESVGQFESDTLFLESVKVLKLKCAR 349
>gi|6325367|ref|NP_015435.1| Rpc40p [Saccharomyces cerevisiae S288c]
gi|133369|sp|P07703.1|RPAC1_YEAST RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=C37; AltName: Full=DNA-directed RNA polymerases I
and III 40 kDa polypeptide; Short=AC40; Short=C40
gi|172474|gb|AAA34999.1| RNA polymerase C-40 [Saccharomyces cerevisiae]
gi|914981|gb|AAB68080.1| Rpc40p: RNA Polymerases I and III 40 kD subunit (Swiss Prot.
accession number P07703) [Saccharomyces cerevisiae]
gi|151942887|gb|EDN61233.1| AC40 [Saccharomyces cerevisiae YJM789]
gi|256269060|gb|EEU04397.1| Rpc40p [Saccharomyces cerevisiae JAY291]
gi|285815633|tpg|DAA11525.1| TPA: Rpc40p [Saccharomyces cerevisiae S288c]
gi|323306842|gb|EGA60127.1| Rpc40p [Saccharomyces cerevisiae FostersO]
gi|349581913|dbj|GAA27070.1| K7_Rpc40p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296113|gb|EIW07216.1| Rpc40p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 335
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 190/323 (58%), Gaps = 27/323 (8%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 --GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
P+ + EL + L+ +P S+ F++ P+ P
Sbjct: 144 PDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT----------------FADCPVVPA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A +
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
K P V I++ G A V R T+ RE LR EE+ +V + RV++HFIF +E
Sbjct: 248 QKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFIFNVE 303
Query: 353 STGALSPETLFTEAVKILEDKCE 375
S GA++PE +F ++V+IL++K E
Sbjct: 304 SAGAMTPEEIFFKSVRILKNKAE 326
>gi|384488271|gb|EIE80451.1| hypothetical protein RO3G_05156 [Rhizopus delemar RA 99-880]
Length = 247
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/269 (46%), Positives = 165/269 (61%), Gaps = 42/269 (15%)
Query: 27 KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
KLP ++E RTRV D P + +D L+ F N +V++ RL+K
Sbjct: 5 KLPENVELLRTRVASGSDYP-----------HQYPRIDKGFNLEEFKKNLKVKIQRLSKH 53
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+EFDLIG+DA+IANAFRRI+IAE+PTMAIEKV + NNTS+IQDEV+AHRLGLIPI+ DP
Sbjct: 54 SVEFDLIGVDASIANAFRRIMIAEVPTMAIEKVYVMNNTSIIQDEVVAHRLGLIPILADP 113
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
F+YM+E+ + NT+VF+L CE + P S P ET P
Sbjct: 114 NEFDYMAEDGGPTDLNTLVFRLKKKCE--------------FNPEAS--PDETDPHK--- 154
Query: 207 SKPRTYTSFSSSQDLLPE--------FSNNPIRPML-DITIARLGPGQEIELEAHAVKGI 257
+ S+ S+DL+ E F+ NP RP+ DI IA+L PGQE+E+E H KG+
Sbjct: 155 ---KYINSYVYSKDLIWEPKGNQEEKFAANPPRPVHDDIVIAKLRPGQEMEMELHCQKGV 211
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVED 286
G+ HAKWSPVATA YR+LPEI +LE + D
Sbjct: 212 GREHAKWSPVATASYRLLPEITILEPITD 240
>gi|307181041|gb|EFN68815.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Camponotus
floridanus]
Length = 344
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 191/332 (57%), Gaps = 21/332 (6%)
Query: 58 YASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIE 117
YA + L ++ R+E++R ++EFD+IG D ++ NAFRRILI+E+P+MAI+
Sbjct: 21 YARETSSKATALKNYIQELRIEIVREEDKELEFDIIGCDISLVNAFRRILISEVPSMAID 80
Query: 118 KVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY---MSENDTSNEKNTIVFKLHVLCER 174
KV I NNTS++QDEVLAHRLGLIP+ DPRLFEY +++ +E++T+ ++L V C
Sbjct: 81 KVFIINNTSLLQDEVLAHRLGLIPLRADPRLFEYPPSGRKDEEVSEQDTLKYELKVTC-- 138
Query: 175 GGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML 234
P S LP + +S SK + D+ P +
Sbjct: 139 ---------TTHPQAPKYSRLPEDMYRNSKVYSKDIKWVPIGRQGDMFPHGTEQFSVLEN 189
Query: 235 DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK 294
DI I ++ PG EI HAVKGIGK HAK+SPVA A YR++P I L + V +EDA+ L++
Sbjct: 190 DILICKMRPGHEIHAFMHAVKGIGKDHAKFSPVAPARYRLMPAIELTKPVRNEDAD-LLQ 248
Query: 295 TC--PVNVFDIE-DIGSGKK--RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIF 349
+C P + +E + SG+K A V R + R R E+ + V + R+ DH IF
Sbjct: 249 SCFSPAVIEVVEKETSSGEKYREARVKNARYDSCARNVYRY-EQLKDCVKMTRISDHVIF 307
Query: 350 TIESTGALSPETLFTEAVKILEDKCERVITEL 381
IES G L P LFTEAVK+L++KC + EL
Sbjct: 308 NIESVGTLPPAVLFTEAVKVLKNKCRIFLAEL 339
>gi|401884851|gb|EJT48989.1| hypothetical protein A1Q1_01900 [Trichosporon asahii var. asahii
CBS 2479]
Length = 356
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 188/339 (55%), Gaps = 52/339 (15%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y G D+S LD F RLT +EFDL+G+DA+IAN+ RR++IAE+PT
Sbjct: 43 FPGHYP--GEDHSWNLDKFKE-------RLTPSTVEFDLVGVDASIANSLRRVMIAEVPT 93
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN-EKNTIVFKLHVLC 172
+AIE V + NNTS++QDEVLAHR+GL+P+ +DPR ++ N ++ E +T VF L V C
Sbjct: 94 VAIEDVYVWNNTSIMQDEVLAHRVGLVPLKIDPRTLDFKPSNYSAPMENDTHVFDLRVKC 153
Query: 173 ER---GGPRLT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
+R P T V T +KW+P+G + SK
Sbjct: 154 DRRRDAAPGETDPKKLYYDSNVYTGMMKWVPSGQQ-----------KSK----------- 191
Query: 220 DLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
+ RP+L DI + +L PGQ ++L A KG+G HAK+SPVATA YR+LP I
Sbjct: 192 -----YKGKEPRPVLDDILLVKLRPGQMVDLHCFARKGVGADHAKYSPVATASYRLLPHI 246
Query: 279 VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRV 338
+L E + ED EK V ++E G ++ V PR T+ RE LR +E++ +V
Sbjct: 247 ILREPIPLEDQEKFKSCFAPGVIELEKDADGNQQVVVKNPRKDTVSREVLR-HKEFQDKV 305
Query: 339 SIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+ R++DHFIF +ES G PE L EA+KI+ K V
Sbjct: 306 ELARIRDHFIFNVESAGQYPPEELVPEAIKIMLSKISAV 344
>gi|323335178|gb|EGA76468.1| Rpc40p [Saccharomyces cerevisiae Vin13]
gi|323346326|gb|EGA80616.1| Rpc40p [Saccharomyces cerevisiae Lalvin QA23]
Length = 335
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 190/323 (58%), Gaps = 27/323 (8%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 --GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
P+ + EL + L+ +P S+ F++ P+ P
Sbjct: 144 PDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT----------------FADCPVVPA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A +
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
K P V I++ G A V R T+ RE LR EE+ +V + RV++HFIF +E
Sbjct: 248 QKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFIFNVE 303
Query: 353 STGALSPETLFTEAVKILEDKCE 375
S GA++PE +F ++V+IL++K E
Sbjct: 304 SXGAMTPEEIFFKSVRILKNKAE 326
>gi|195035209|ref|XP_001989070.1| GH11517 [Drosophila grimshawi]
gi|193905070|gb|EDW03937.1| GH11517 [Drosophila grimshawi]
Length = 333
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 189/334 (56%), Gaps = 47/334 (14%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
D ++ F N +V ++R +++ +EFDLIG+ AIANAFRR++++E+P+MAIEKV I
Sbjct: 28 DEVFNMEVFKNKLQVVIVRNDEENGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIY 87
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCERGGPRLT 180
NNTS+IQDEVLAHR+GL+P+ DPRLF Y SE T +E++T+ ++L V C R
Sbjct: 88 NNTSIIQDEVLAHRMGLLPLRADPRLFAYRSEESTEQGSEQDTLEYELKVKCTRRKDATK 147
Query: 181 VKTN-------------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
++N LKWLP G + + E S
Sbjct: 148 EQSNFDDIYKNHKVYSGHLKWLPKGKQ------------------------GQIYSESSV 183
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
N I DI IA+L PG E++L AVKGIGK HAK+SPVATA+YR+LP+I L +V +
Sbjct: 184 NCIHD--DILIAQLRPGHELDLRLIAVKGIGKDHAKFSPVATAFYRLLPQITLTREVSGK 241
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
DA L V I++ + A V R + R R + V + RV+DH+
Sbjct: 242 DAYLLQNCFSPGVIGIDE----NECAYVKDARYDSCSRNVYRY-PQLADAVIMARVRDHY 296
Query: 348 IFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
IF++ES GAL PE +F EAVK+L+ KC I E+
Sbjct: 297 IFSVESVGALKPEVIFLEAVKVLKKKCRAFIDEI 330
>gi|212530122|ref|XP_002145218.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
gi|210074616|gb|EEA28703.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
Length = 373
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/346 (41%), Positives = 195/346 (56%), Gaps = 39/346 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + ++ F NNFRV+ + D F L+G+DA++ANAFRRILIAE+PT+AIE V I
Sbjct: 38 GESHEWSIEKFQNNFRVDFHKNETYDASFSLVGLDASVANAFRRILIAEVPTLAIEFVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM------SENDTSNEK----NTIVFKLHVL 171
NNTSVIQDEVLA RLGLIP+ +M +E D S+ + NT+V L++
Sbjct: 98 LNNTSVIQDEVLASRLGLIPLKGSIEGLNWMQWFKKATEEDPSSSEPSDFNTVVLNLNIE 157
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPI 230
C NE P G E P +++ + T+ + E P+
Sbjct: 158 C---------TVNEKA--PPGEEDPRIRYHNAHVYASDITFDPKGRQEHYFSGEGEIKPV 206
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
P DI IA+L PGQ IELE H +KGIG HAK+SPVATA YR+LPEI ++ + EDA
Sbjct: 207 NP--DILIAKLRPGQVIELEMHCIKGIGADHAKFSPVATATYRLLPEIRIMRPIIGEDAR 264
Query: 291 KLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWEK 336
K K P V E I GS G+ +A V P T+ RECLR +E++
Sbjct: 265 KFAKCFPKGVIGFEKITPAEAAQKGSGYEGHAGEDKAVVVDPFKDTVSRECLR-HDEFKD 323
Query: 337 RVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+V + RV+DHFIF +ESTG +TLF E+VK+L+ KC R+ +L+
Sbjct: 324 KVKLGRVRDHFIFNVESTGQFPSDTLFLESVKVLKLKCVRLKRDLN 369
>gi|448510710|ref|XP_003866410.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
gi|380350748|emb|CCG20970.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
Length = 336
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 196/349 (56%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H SG Y S ++ F +F +++ +++ FD
Sbjct: 9 IEYNRVTNTSSTDFPGHQS----SGDY-------SWDIEKFKQSFDIKITNVSERVANFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+ ID +IANAFRRI+IAE+P++A+E V NTSVIQDEVLAHR+GLIP+ VDP +
Sbjct: 58 LVHIDTSIANAFRRIMIAEVPSVAVETVYSFMNTSVIQDEVLAHRIGLIPLKVDPDSLTW 117
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ END E NTIV L V C + P S P E +SN +
Sbjct: 118 VDKTVDENDRYTEDNTIVLSLDVTCTKN-----------PHAPKNSTNPSELYRNSNVYA 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K F L ++ +NP+ P +I +A+L PGQEI L AH + GIG HAK+SP
Sbjct: 167 KD---LKFEPQGSQLEKYKDNPVVPTDPNILLAKLRPGQEISLRAHCILGIGADHAKFSP 223
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I + E + E A+K K P V +I+ G A VA R T+ RE
Sbjct: 224 VATASYRLLPVIDIKEPITGELAKKFQKCFPSGVIEIDPKG----EAYVADARKDTVSRE 279
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR E+ +V + R +D+FIF +ESTGA+SPE +F ++V++L++K E
Sbjct: 280 VLR-HPEFNGKVKLGRQRDYFIFQVESTGAMSPEEIFFKSVRVLKNKAE 327
>gi|50307479|ref|XP_453719.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642853|emb|CAH00815.1| KLLA0D14861p [Kluyveromyces lactis]
Length = 334
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 194/329 (58%), Gaps = 48/329 (14%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
DNS L+ F F V++ L + ++ FDL+ +D +IANAFRRI+I+E+P++A E V N
Sbjct: 28 DNSWDLEKFKETFDVQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLCERG---- 175
NTSV+QDEVLAHR+GL+P+ VDP + + + E++ ++NTIV L+V C R
Sbjct: 88 NTSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAP 147
Query: 176 ----GPRLTVKT-----NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
P++ + +LK+ P G ++ K P +
Sbjct: 148 KDCEDPKVLYRNAHIYARDLKFEPQGKQVEQFAK---------------------CPVVA 186
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
+P DI +A+L PGQEI L AH + GIG HAK+SPV+TA YR+LP I + + +
Sbjct: 187 ADP-----DILLAKLRPGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQITQPITG 241
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
+DA+K VK P V D+ + G A + PR T+ RE LR +E++ +V + RV+DH
Sbjct: 242 DDAKKFVKCFPKGVADVNEKG----EAYIKDPRKDTVSREVLR-HDEFQGKVKLGRVRDH 296
Query: 347 FIFTIESTGALSPETLFTEAVKILEDKCE 375
FIF +ES+GA++PE +F ++V+IL++K E
Sbjct: 297 FIFNVESSGAMTPEEIFFKSVRILKNKAE 325
>gi|169774489|ref|XP_001821712.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
oryzae RIB40]
gi|238496959|ref|XP_002379715.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
gi|83769575|dbj|BAE59710.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694595|gb|EED50939.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
Length = 373
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 210/375 (56%), Gaps = 42/375 (11%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E R R V NL+ + + + G + G + L+ F N F VE R +
Sbjct: 5 VPSQAELDRRRLVDINLETVSNIPSTDFPGHWP--GESHEWNLEKFRNEFNVEFHRNERF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI--IV 144
+ F LIG+DA+IANAFRRI++AE+P++AIE V + NNTSVIQDEVLA RLGLIP+ V
Sbjct: 63 ESSFSLIGVDASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSV 122
Query: 145 DP----RLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
D R F+ +E+D ++ NTIV +L + C + P N+ P
Sbjct: 123 DGINWMRWFKKATEDDPEGSDPSDYNTIVLRLDIECTK-NPNADATEND----------P 171
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ +++ ++ T+ + E + P+ P DI IA+L PGQ+I+LE H +K
Sbjct: 172 RKLYKNAHVYARDITFHPVGRQEQFFTGEDAIQPVNP--DILIAKLRPGQKIDLEMHCIK 229
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------G 307
GIG HAK+SPVATA YR+LP+I +L + EDA+K K P V +E + G
Sbjct: 230 GIGADHAKFSPVATASYRLLPDIQILRPILGEDAKKFAKCFPKGVIGLEPVTREEAAKQG 289
Query: 308 S------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
S G+ +A V T+ RECLR EE++ +V + RV+DHFIF IESTG +
Sbjct: 290 SGYEGHEGETKAVVRDAFKDTVSRECLR-HEEFQGKVKLGRVRDHFIFNIESTGQFDSDV 348
Query: 362 LFTEAVKILEDKCER 376
LF E+VK+L+ KC R
Sbjct: 349 LFLESVKVLKLKCAR 363
>gi|157116377|ref|XP_001658447.1| DNA-directed RNA polymerase [Aedes aegypti]
gi|108876498|gb|EAT40723.1| AAEL007568-PA [Aedes aegypti]
Length = 335
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 187/327 (57%), Gaps = 45/327 (13%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+ F ++ ++R ++++EFD++G++ AIANAFRR++++E+P+MAIEKV I NNTS+I
Sbjct: 37 FERFKQQLQIVIVRYEENELEFDMVGVNPAIANAFRRLMLSEVPSMAIEKVHIYNNTSII 96
Query: 129 QDEVLAHRLGLIPIIVDPRLFEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTN--- 184
QDEVLAHRLGLIP+ DPRLFEY +END N +T+ F+L V C + T TN
Sbjct: 97 QDEVLAHRLGLIPLRADPRLFEYKTNENDPPNALDTLEFELKVKCTKKNKDSTEITNNDS 156
Query: 185 ----------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML 234
++KW+P G++ + + D P
Sbjct: 157 MYKNHSIYSGQIKWIPVGNQASIYKEADVGPIDD-------------------------- 190
Query: 235 DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK 294
DI I+++ PG E +++ A+KGIGK HAK+SPVATA YR+LPE+ L V DA L K
Sbjct: 191 DILISKMRPGHEFDIKLFAMKGIGKDHAKFSPVATASYRLLPEVRLTRPVVGRDALLLQK 250
Query: 295 TCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIEST 354
V +I+ +A V R + R R + + V++ RV++HFIF +ES
Sbjct: 251 CFSPGVIEID----KDDQAYVKDARYDSCSRNVYRYPQIADA-VTLSRVRNHFIFNVESL 305
Query: 355 GALSPETLFTEAVKILEDKCERVITEL 381
GAL P+ +F EA K+L+ KC+ + E+
Sbjct: 306 GALKPDVIFVEAAKVLKKKCKMFLDEI 332
>gi|409050971|gb|EKM60447.1| hypothetical protein PHACADRAFT_179740 [Phanerochaete carnosa
HHB-10118-sp]
Length = 378
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 188/321 (58%), Gaps = 45/321 (14%)
Query: 71 HFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQD 130
H N +V+V RL++ +EFDL+G+DA+IANAFRRI+IAE+PT+AIE V + NNTSVI D
Sbjct: 56 HVPCNLQVKVQRLSQRSIEFDLVGVDASIANAFRRIIIAEVPTIAIEHVYVWNNTSVIHD 115
Query: 131 EVLAHRLGLIPIIVDPRLFEYMSEND---TSNEKNTIVFKLHVLCERGGPRLT------- 180
EVLAHR+GL+P+ DP ++ + T N++NT+VF+L CER P+ +
Sbjct: 116 EVLAHRIGLVPLSADPSTLDFRTPTGFGATPNDRNTLVFRLQATCER-APKGSGKEYIND 174
Query: 181 -VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITI 238
VK+ +L W+P G + + F+NNP P DI +
Sbjct: 175 EVKSGDLVWVPQGEQEEV---------------------------FANNPPGPTNKDIVL 207
Query: 239 ARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTC 296
A+L PGQEI++E HA+KG+GK HAKWSPVATA YR+ P I+L + V A+K
Sbjct: 208 AKLRPGQEIDMELHAIKGVGKEHAKWSPVATASYRLHPLILLNPQKPVPTHLAKKFAGCF 267
Query: 297 PVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGA 356
V ++ G+ + R ++ RE LR EE++ V ++RV+D FIF +ES G
Sbjct: 268 SPGVVQVD--ADGEISIDLHGMRKDSVSREVLRH-EEFQGCVELKRVRDWFIFNVESEGP 324
Query: 357 LSPETLFTEAVKILEDKCERV 377
+PE L EAVK++ +K +
Sbjct: 325 YAPERLLPEAVKVMREKVASI 345
>gi|425767889|gb|EKV06440.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum Pd1]
gi|425769702|gb|EKV08188.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum PHI26]
Length = 374
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 145/371 (39%), Positives = 202/371 (54%), Gaps = 43/371 (11%)
Query: 33 EFQRTRV-QCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
E QR R+ N + + + + G + G + LD F NNF+VE R + + F
Sbjct: 10 ELQRRRIIGINAETVTNIPSTDFPGHWP--GESHGWALDEFKNNFKVEFHRNERFEASFS 67
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LIG+D A+ANAFRRIL+AE+PT+AIE I NNTSVIQDEVLA RLGLIP+ +
Sbjct: 68 LIGLDPAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLAQRLGLIPLKGSIEGINW 127
Query: 152 M------SENDTSNEK-----NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
M SE+ T E NTIV L V C + ++ + P +
Sbjct: 128 MHWYKKASEDGTEEEDGPCDFNTIVLHLDVECYKN-----------EYADKDEQDPRKLY 176
Query: 201 PDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+++ +K Y Q + + + P+ P DI IA+L PGQ+IE+E H KGIG
Sbjct: 177 TNAHVYAKDLMYMPVGRQEQYFVGDGAIAPVNP--DILIAKLRPGQKIEMELHCQKGIGA 234
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS----------- 308
HAK+SPVATA YR+LP+I +L + EDA+K K P V +E + S
Sbjct: 235 DHAKFSPVATASYRLLPDINILRPIIGEDAKKFAKCFPKGVIGLEPVTSAEAAQRGSGYE 294
Query: 309 ---GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
G+++A V T+ RECLR +E++ +V + RV+DHFIF +ESTG + LF E
Sbjct: 295 GHAGEQKAVVKDAFNDTVSRECLR-HDEFQGKVKLGRVRDHFIFNVESTGQFESDMLFLE 353
Query: 366 AVKILEDKCER 376
AVK+++ KC R
Sbjct: 354 AVKVMKLKCNR 364
>gi|391342311|ref|XP_003745464.1| PREDICTED: uncharacterized protein LOC100901074 [Metaseiulus
occidentalis]
Length = 684
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 199/332 (59%), Gaps = 19/332 (5%)
Query: 51 NVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAE 110
N+ S AY + L F R+ V++ T +D+EFD+IG+D AIANA RRILIAE
Sbjct: 357 NIRLSEAYGEGS--QAYSLADFRRKLRMSVVKCTDEDLEFDIIGVDPAIANAIRRILIAE 414
Query: 111 LPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHV 170
+PTMA +++ + NNTS I D+ L +R+GL+PI VD RLFE + ++ ++T+VF+LH+
Sbjct: 415 VPTMAADRITLINNTSFIHDKDLTNRIGLVPIRVDSRLFENRNPEQPASSQDTVVFELHI 474
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C T L+ + S LP + +S+ S T+ Q++L F+ NP
Sbjct: 475 RC----------TKNLQAAQD-STLPKDIYSNSSVYSGHLTWVPL-EGQEML--FAKNPP 520
Query: 231 RPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
+P+ DI IA+L PGQEI+++ +KGIGKTHAK+SPVATA YR+LP I +LEDV E A
Sbjct: 521 KPIHDDILIAKLRPGQEIDMKIEYLKGIGKTHAKFSPVATASYRLLPVIEILEDVCGEAA 580
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIF 349
+L + V +IE +G A + PR T R L ++ ++V + R DHFIF
Sbjct: 581 RRLKNSFSKGVVEIEK-RNGVDVAKIVNPRMDTCSRNVL-MHDDLAEKVRLGRKLDHFIF 638
Query: 350 TIESTGALSPETLFTEAVKILEDKCERVITEL 381
++ES G L + L E++K++ KC+ + ++
Sbjct: 639 SVESVGMLPSDILVKESIKVMLGKCKSFLDQI 670
>gi|159129762|gb|EDP54876.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus A1163]
Length = 414
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 139/344 (40%), Positives = 196/344 (56%), Gaps = 46/344 (13%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + L+ F + FRVE R + F LIG+DA+IANAFRRIL+AE+PT+AIE V +
Sbjct: 78 GESHEWNLEKFKDGFRVEFHRNDPFESSFSLIGLDASIANAFRRILMAEVPTLAIEYVFV 137
Query: 122 ANNTSVIQDEVLAHRLGLIPI------IVDPRLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLA RLGLIP+ + R F+ +E+D T + NTIV +L V
Sbjct: 138 HNNTSVIQDEVLASRLGLIPLKGSVEGLNWMRWFKKPTEDDPESGSTPADYNTIVLRLDV 197
Query: 171 LCERGGPRLTVKTNELKWLPN---GSELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFS 226
C PN G + P + +++ +K T+ + + +
Sbjct: 198 ECTEN--------------PNAAPGEDDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDGA 243
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
P+ P DI IA+L PGQ+I++E H +KGIG HAK+SPVATA YR++P+I +L +
Sbjct: 244 IQPVNP--DILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPDIKILRPIIG 301
Query: 287 EDAEKLVKTCPVNVFDIEDIGS--------------GKKRATVAQPRACTLCRECLRCGE 332
EDA+K K P V ++E + S G+ +A V P T+ RECLR E
Sbjct: 302 EDAKKFAKCFPKGVIELEPVTSREAAQKGSEYEGRAGEMKAVVRDPFKDTVSRECLR-HE 360
Query: 333 EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
E++ +V + R++DHFIF +ESTG + LF E+VK+L+ KC R
Sbjct: 361 EFQGKVKLGRIRDHFIFNVESTGQFESDYLFLESVKVLKLKCAR 404
>gi|224009616|ref|XP_002293766.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
gi|220970438|gb|EED88775.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
Length = 351
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 136/339 (40%), Positives = 199/339 (58%), Gaps = 47/339 (13%)
Query: 64 DNSLQLDHFCNNFRVEVI-RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
D + L NF + V+ R +K+++ F+++G+D + ANA RRI+IAE+PTMA+E V +
Sbjct: 32 DGTEFLSRIRQNFSLRVLERPSKNELVFEVVGVDVSFANALRRIMIAEIPTMALEHVYMW 91
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLF-EYMSEND-----TSNEKNTIVFKLH---VLCE 173
NN+S+I DEVL+HRLGL+P+ VDPRLF EY + D + ++NTIVF+L+ L
Sbjct: 92 NNSSLIHDEVLSHRLGLVPLNVDPRLFDEYGVDVDEVGEVAATDRNTIVFRLNEATSLHS 151
Query: 174 RGGPRLTV------------KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL 221
+ TV T +L W P GS+L T+F
Sbjct: 152 SSNQQKTVIDSPHRPFTKHIYTRDLLWAPQGSQL-----------------TNFPLHSTG 194
Query: 222 LPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+ IRP+ DI +A+L PGQ IELEAHA KG+GK HAK+SPVATA YR++P I +
Sbjct: 195 VGSGVGGGIRPISEDILLAKLRPGQVIELEAHARKGVGKDHAKFSPVATASYRLMPHIEI 254
Query: 281 LEDVEDEDAEKLVKTCPVNVF-----DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWE 335
++ + DE AE+LV VF D ED G K +A ++ P ACT+ R +R +
Sbjct: 255 VKPIYDELAEELVNWFEPGVFKLVPADDED-GGHKVKAELSNPYACTMSRNYMR-NPTLK 312
Query: 336 KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
+ + + RV +HFIF++ES G + P + +EA+K+L++KC
Sbjct: 313 ESIKMSRVPNHFIFSVESVGMMEPAVIVSEALKVLKEKC 351
>gi|367015666|ref|XP_003682332.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
gi|359749994|emb|CCE93121.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
Length = 335
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 195/337 (57%), Gaps = 50/337 (14%)
Query: 57 AYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAI 116
Y+ G DN ++ F N F V++ LT+ + FDLI ID +IANAFRRI+I+E+P++A
Sbjct: 22 GYSKEG-DNEWDVEKFKNTFDVQIESLTEREANFDLIHIDTSIANAFRRIMISEVPSLAP 80
Query: 117 EKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLC 172
E V NNTSVIQDEVLAHR+GL+P+ VDP + + + E + ++NTIV L+V C
Sbjct: 81 EHVYFLNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSTLPEEERFTDENTIVLTLNVTC 140
Query: 173 ERG--------GPRL-----TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
R P++ +V ++LK+ P G + L
Sbjct: 141 TRNPDAPKDCTDPKILYRNSSVYAHDLKFEPQGRQAEL---------------------- 178
Query: 220 DLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
F+ P+ P DI +A+L PGQEI L AH + G+G HAK+SPVATA YR+LP I
Sbjct: 179 -----FAKCPVVPADPDILLAKLRPGQEISLRAHCILGVGGDHAKFSPVATASYRLLPHI 233
Query: 279 VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRV 338
+ + + E A+K K V DI++ +G+ A V R T+ RE LR EE+ V
Sbjct: 234 NITKPITGESAKKFQKCFSPGVIDIDE-STGE--AVVKDARRDTVSREVLR-HEEFADSV 289
Query: 339 SIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
+ RV+DHFIF +ESTGA++PE +F ++V+IL++K E
Sbjct: 290 KLGRVRDHFIFNVESTGAMTPEEIFFKSVRILKNKAE 326
>gi|366988647|ref|XP_003674091.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
gi|342299954|emb|CCC67710.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
Length = 335
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 189/322 (58%), Gaps = 35/322 (10%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
N+ ++ F N F+VE+ L + + FDLI ID +IANAFRRI+I+E+P +A E V NN
Sbjct: 29 NAWDVEKFRNTFKVEISSLNEREANFDLINIDTSIANAFRRIMISEVPAVAAEYVYFLNN 88
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLCERGGPRLT 180
TSVIQDEVLAHR+GLIP+ VDP L + + + + N+ NTIV L+V C R
Sbjct: 89 TSVIQDEVLAHRIGLIPLKVDPDLLTWVDNELPDEEKFNDTNTIVLTLNVKCTRN----- 143
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE------FSNNPIRPM- 233
P K ++P R + ++S P+ F+ P+ P
Sbjct: 144 ---------------PDAPKDATDPKILYRNSSVYASDLKFEPQGKQIETFAGTPVVPCD 188
Query: 234 LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
DI +A+L PGQEI L AH + G G HAK+SPV+TA YR+LP I + + ++ E AEK
Sbjct: 189 QDILLAKLRPGQEISLRAHCILGTGGDHAKFSPVSTASYRLLPHINITKPIKGELAEKFQ 248
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES 353
K V I++ SG+ A V R T+ RE LR EE+ +V + R++DHFIF +ES
Sbjct: 249 KCFLPGVIGIDN-ASGE--AFVKDARKDTVSREVLR-HEEFNDKVKLGRIRDHFIFNVES 304
Query: 354 TGALSPETLFTEAVKILEDKCE 375
TGA++PE +F ++V+IL++K E
Sbjct: 305 TGAMTPEEIFFKSVRILKNKAE 326
>gi|410075079|ref|XP_003955122.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
gi|372461704|emb|CCF55987.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
Length = 334
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 192/328 (58%), Gaps = 33/328 (10%)
Query: 57 AYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAI 116
++S G DN+ ++ F +F V++ + + + FDL+ ID ++ANAFRRI+I+E+P +A+
Sbjct: 22 GFSSSG-DNAWDVEKFRESFDVKISSMNEREANFDLVHIDTSVANAFRRIMISEVPAVAV 80
Query: 117 EKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLC 172
E V NNTSVIQDEVLAHR+GL+P+ VDP + ++ + +EK NTIV L+V C
Sbjct: 81 EYVYFLNNTSVIQDEVLAHRIGLVPLKVDPDMLTWIDSSLPDDEKFTDENTIVLTLNVKC 140
Query: 173 ERG--GPRLTVKTNELKWLPN--GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
R PR N L N S+L E P K + F+NN
Sbjct: 141 TRNPDAPRDCTDPNILYRNSNVYASDLKFE------PQGKQ------------VETFANN 182
Query: 229 PIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
+ P I +A+L PGQEI L AH + GIG HAK+SPVATA YR+LP I + E + E
Sbjct: 183 AVVPCDPKILLAKLRPGQEISLRAHCILGIGSDHAKFSPVATASYRLLPHIEITEPITGE 242
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
A++ K P V I++ G A V R T+ RE R EE+ +V + R++DHF
Sbjct: 243 SAKRFQKCFPAGVIGIKENGD----AYVQDSRKDTVSREVYR-HEEFNGKVKLGRIRDHF 297
Query: 348 IFTIESTGALSPETLFTEAVKILEDKCE 375
+F +ESTGA++PE +F ++V+IL++K E
Sbjct: 298 VFNVESTGAMTPEEIFFKSVRILKNKAE 325
>gi|146322984|ref|XP_755705.2| DNA-directed RNA polymerase I and III subunit Rpc40 [Aspergillus
fumigatus Af293]
gi|129558558|gb|EAL93667.2| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus Af293]
Length = 374
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 139/344 (40%), Positives = 196/344 (56%), Gaps = 46/344 (13%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + L+ F + FRVE R + F LIG+DA+IANAFRRIL+AE+PT+AIE V +
Sbjct: 38 GESHEWNLEKFKDGFRVEFHRNDPFESSFSLIGLDASIANAFRRILMAEVPTLAIEYVFV 97
Query: 122 ANNTSVIQDEVLAHRLGLIPI------IVDPRLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLA RLGLIP+ + R F+ +E+D T + NTIV +L V
Sbjct: 98 HNNTSVIQDEVLASRLGLIPLKGSVEGLNWMRWFKKPTEDDPESGSTPADYNTIVLRLDV 157
Query: 171 LCERGGPRLTVKTNELKWLPN---GSELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFS 226
C PN G + P + +++ +K T+ + + +
Sbjct: 158 ECTEN--------------PNAAPGEDDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDGA 203
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
P+ P DI IA+L PGQ+I++E H +KGIG HAK+SPVATA YR++P+I +L +
Sbjct: 204 IQPVNP--DILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPDIKILRPIIG 261
Query: 287 EDAEKLVKTCPVNVFDIEDIGS--------------GKKRATVAQPRACTLCRECLRCGE 332
EDA+K K P V ++E + S G+ +A V P T+ RECLR E
Sbjct: 262 EDAKKFAKCFPKGVIELEPVTSREAAQKGSEYEGRAGEMKAVVRDPFKDTVSRECLRH-E 320
Query: 333 EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
E++ +V + R++DHFIF +ESTG + LF E+VK+L+ KC R
Sbjct: 321 EFQGKVKLGRIRDHFIFNVESTGQFESDYLFLESVKVLKLKCAR 364
>gi|194856389|ref|XP_001968740.1| GG25034 [Drosophila erecta]
gi|190660607|gb|EDV57799.1| GG25034 [Drosophila erecta]
Length = 329
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 189/333 (56%), Gaps = 46/333 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ ++ F +++++ +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 25 DDVFSVEAFKEKLHIKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 84
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCER---GGPR 178
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ F+L V C R G
Sbjct: 85 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKD 144
Query: 179 LT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+ V + LKWLP G + + + E + N
Sbjct: 145 QSNFDDIYKNHKVYSGHLKWLPKGKQAQIYS------------------------ESAVN 180
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
I DI IA+L PG E++L AVKG+G+ HAK+SPVATA YR+LP+I L +V +D
Sbjct: 181 CIHD--DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPQIKLNREVSGKD 238
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R T R R + V++ R++DH+I
Sbjct: 239 AYLLQSCFSPGVIGIDE----NETAYVKDARYDTCSRNVYRY-PQLNDAVTLSRIRDHYI 293
Query: 349 FTIESTGALSPETLFTEAVKILEDKCERVITEL 381
F++ES GAL P+ +F EAVK+L+ KC I E+
Sbjct: 294 FSVESVGALKPDVIFLEAVKVLKRKCRAFIDEI 326
>gi|156089735|ref|XP_001612274.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
gi|154799528|gb|EDO08706.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
Length = 319
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 185/310 (59%), Gaps = 42/310 (13%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
+ +++ ++ T+ ++ G++ AIANA RRIL+AE+PT+AIE V I NT VIQDEVLA
Sbjct: 33 DVKIKFLKNTRYHAIAEIEGLNVAIANAIRRILLAEVPTLAIESVHIYQNTGVIQDEVLA 92
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCER----GGPRLTVKTNELKWLP 190
HRLGL+P +P L Y D S +KN++ F L V C++ G L V ++KW+P
Sbjct: 93 HRLGLVPFDCNPDLIPYRDNEDLS-DKNSVCFHLKVECKKESLAGRTNLPVYAGDMKWVP 151
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIEL 249
S Q L F +NP +P+ DI + +L PGQEI+L
Sbjct: 152 ------------------------LSDEQAEL--FKDNPPKPIHKDILLTKLSPGQEIDL 185
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDAEKLVKTCPVNVFDIEDIG 307
+A+ KGIGKTHAKWSPV TA YR P+I ED + +++ E+LV+ CP+ VF
Sbjct: 186 KAYLEKGIGKTHAKWSPVCTAVYRFKPDITFSEDEPLTNDEVEELVQICPMGVF-----S 240
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ K R T +P CT CR CL E + KRV I+++ +HFIF++ESTGA+ LF +A+
Sbjct: 241 ADKGRITTIRPYNCTSCRACL---ERFPKRVIIKKLSNHFIFSVESTGAIPSGQLFLKAI 297
Query: 368 KILEDKCERV 377
+L++K +++
Sbjct: 298 GVLKEKSQKL 307
>gi|50285441|ref|XP_445149.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524452|emb|CAG58049.1| unnamed protein product [Candida glabrata]
Length = 334
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 137/349 (39%), Positives = 192/349 (55%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P Y+S G N+ ++ F F ++V + ++ FD
Sbjct: 7 IEYNRVTNTASTDFP----------GYSSQGA-NAWDVERFRETFDIQVSSHEERELNFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+IGID ++ANAFRRI+IAE+P +A E V I NNTSVIQDEVLAHR+GL+P+ VDP E
Sbjct: 56 MIGIDTSLANAFRRIMIAEVPAVAPEYVYIQNNTSVIQDEVLAHRIGLVPLKVDPEKLER 115
Query: 152 MSENDTSN----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ +D N +KNTIV L+V C R P + L N + +
Sbjct: 116 LDTSDPDNLEFHDKNTIVMTLNVKCTR-NPDAPKDCTDPTILYNNAHVYARD-------- 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
F + F++ P+ P DI +A+L PGQEI L H + G GK HAK+SP
Sbjct: 167 -----LKFEPHSSQVETFADCPVVPCDPDILLAKLRPGQEISLSTHCILGEGKDHAKFSP 221
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I +LE + + A++ P V I + G A V PR T+ RE
Sbjct: 222 VATASYRLLPHIEILEPITGDSAKRFQACFPKGVIGINENG----EAYVLDPRKDTVSRE 277
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR EE+E +V + RV+DHF+F +ESTGA+ PE + +++ IL+ K E
Sbjct: 278 VLR-HEEFEGKVKLGRVRDHFVFNVESTGAMQPEDIVLKSIDILKKKAE 325
>gi|449299411|gb|EMC95425.1| hypothetical protein BAUCODRAFT_541052 [Baudoinia compniacensis
UAMH 10762]
Length = 388
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 209/379 (55%), Gaps = 41/379 (10%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR V N + G Y G D+S L+ F +V+ + D F L+G
Sbjct: 14 QRRIVNLNPETVTDVSATDIPGHYGP-GQDDSWDLERFKKGLKVDFHQNAPHDAVFSLVG 72
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-- 152
+DA+IANAFRRIL+AE+PT+AIE V I NNTS+IQDEVLAHRLGLIP+ + E++
Sbjct: 73 VDASIANAFRRILLAEIPTLAIEDVFIFNNTSIIQDEVLAHRLGLIPLTGGKKGLEWLRW 132
Query: 153 ----------------SEND------TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
++D T N+ NTIV L V C R + ++ +
Sbjct: 133 YKKPPPKDDFAAQALHDDDDGEPGVSTPNDHNTIVVTLKVEC-----RWATEQDDGR--- 184
Query: 191 NGSELPLETKPDSN----PSSKPRTYTSFSSSQDLLPEFSN-NPIRPM-LDITIARLGPG 244
+G +L E + D S+ F + FS N IRP+ DI IA+L PG
Sbjct: 185 DGRQLAQEGETDPEVRYVGSNVYAHQLVFEPQGEQTQHFSGENAIRPVNPDILIAKLRPG 244
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
Q+I+L H KGIG HAK+SPVATA YR+LP+I +++ + +A+K + P V D++
Sbjct: 245 QKIDLRCHCYKGIGMDHAKFSPVATASYRLLPDINIIKPILGAEAKKFQRCFPRGVIDLK 304
Query: 305 -DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
D +G+ +A VA P T+ RECLR +E++ +V + R++DHFIF+IESTG + LF
Sbjct: 305 HDDETGESKAVVADPMKDTVSRECLRH-DEFKGKVKLGRIRDHFIFSIESTGQFESDELF 363
Query: 364 TEAVKILEDKCERVITELS 382
++V++L+ K ER L+
Sbjct: 364 LDSVRLLKAKAERFKRNLN 382
>gi|119481605|ref|XP_001260831.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
gi|119408985|gb|EAW18934.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
Length = 374
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 146/379 (38%), Positives = 209/379 (55%), Gaps = 49/379 (12%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E R R V N + + + + G + G + L+ F + FRVE R
Sbjct: 5 IPSQEELDRRRIVGINPETVTNIPSTDFPGHWP--GESHEWNLETFRDGFRVEFHRNDPF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---- 142
+ F LIG+DA+IANAFRRIL+AE+PT+AIE V + NNTSVIQDEVLA RLGLIP+
Sbjct: 63 ESSFSLIGLDASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSV 122
Query: 143 --IVDPRLFEYMSEND-----TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN---G 192
+ R F+ +E+D T + NTIV +L V C PN G
Sbjct: 123 EGLNWMRWFKKPTEDDPESGSTPADYNTIVLRLDVECTEN--------------PNAAPG 168
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEA 251
+ P + +++ +K T+ + + + P+ P DI IA+L PGQ+I++E
Sbjct: 169 EDDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDGAIQPVNP--DILIAKLRPGQKIDMEL 226
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--- 308
H +KGIG HAK+SPVATA YR++P+I +L + EDA+K K P V ++E + S
Sbjct: 227 HCIKGIGADHAKFSPVATATYRLMPDIKILRPIIGEDAKKFAKCFPKGVVELEPVTSREA 286
Query: 309 -----------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
G+ +A V P T+ RECLR EE++ +V + R++DHFIF +ESTG
Sbjct: 287 AQKGSEYEGRAGEMKAVVRDPFKDTVSRECLRH-EEFQGKVKLGRIRDHFIFNVESTGQF 345
Query: 358 SPETLFTEAVKILEDKCER 376
+ LF E+VK+L+ KC R
Sbjct: 346 ESDYLFLESVKVLKLKCAR 364
>gi|398398399|ref|XP_003852657.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
gi|339472538|gb|EGP87633.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
Length = 474
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 207/377 (54%), Gaps = 34/377 (9%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R VQ + + T + G Y VD+S L+ F N +VE D F L+G+
Sbjct: 15 RRLVQVGPETVLDTSSTDIPGHYGP-NVDDSWNLERFKQNLKVEFHHNKTYDTAFSLVGV 73
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM--- 152
DA+IANAFRRIL++ELPT+AIE V + +NTS+IQDEVL HRLGLIP+ +++
Sbjct: 74 DASIANAFRRILLSELPTLAIEDVFMFDNTSIIQDEVLCHRLGLIPLTGGREGLQWLRWY 133
Query: 153 ----------------SENDTS---------NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+E ++ ++ NTIV +L+V C R + + +
Sbjct: 134 RKPPPKDDYAALAAWEAEKESGGIDPASSVPSDYNTIVMELNVEC-RWATQEEDGRDGKQ 192
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQE 246
+GS P E +S+ + T+ + Q L E N IRP+ DI IA+L PGQ
Sbjct: 193 LAKDGSTDPKEKYVNSSVYAHQFTFIPQGNHQPTLFE-GENAIRPVNPDILIAKLRPGQR 251
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE-D 305
I L H +KGIG HAK+SPVATA YR+LP+I + + + A+ K P V IE D
Sbjct: 252 IHLRVHCIKGIGADHAKFSPVATASYRLLPQIDIKSPITGQSAKAFQKCFPRGVIGIEHD 311
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
G+K+A V P T+ RECLR +E++ +V + R++DHFIF+IESTG L + LF +
Sbjct: 312 EALGEKKAVVKDPFKDTVSRECLRY-DEFKNKVKLGRIRDHFIFSIESTGQLESDELFLD 370
Query: 366 AVKILEDKCERVITELS 382
+V++L+ K ER L+
Sbjct: 371 SVRLLKAKSERFKRHLA 387
>gi|443897408|dbj|GAC74749.1| RNA polymerase I and III, subunit RPA40/RPC40 [Pseudozyma
antarctica T-34]
Length = 404
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 189/346 (54%), Gaps = 40/346 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R D P+H ++ + A++G ++ + RL+ EFDLIG
Sbjct: 69 ERVGSVAETDFPLHHPGEAHTFSLATLG-----------ERLKLIITRLSDASCEFDLIG 117
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANA RR+L+AE+PT+AIE V I NNTS+IQDEVL+HRLGL+P+ + P
Sbjct: 118 VDASIANAIRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGLVPLAIHPDKVLMRQP 177
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS-----NPSSKP 209
D +++ NT+VF L CER N + ET PD N S
Sbjct: 178 GDDADDSNTVVFHLKAKCER----------------NRNAARGETDPDKLYIGHNVYSGA 221
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
+ +D +F++ P RP+ D I IA+L PGQE++LE H KGIGK HAK+SPVA
Sbjct: 222 LEWDPKGGQED---DFADAPPRPVHDRILIAKLRPGQELDLELHCEKGIGKDHAKFSPVA 278
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ-PRACTLCREC 327
TA YR+LP I LL+ V +K V P V + G G +R Q R T+ RE
Sbjct: 279 TATYRLLPHIQLLQPVPAALVDKFVACFPPGVIGVS--GEGDERKVFVQDARKDTISREV 336
Query: 328 LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
R +E+E V + RV+DHF+F +ESTG + PE L EA++ L K
Sbjct: 337 FRH-DEFENTVKLGRVRDHFLFDLESTGVIPPERLLPEAIRTLRAK 381
>gi|367001448|ref|XP_003685459.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
gi|357523757|emb|CCE63025.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 191/346 (55%), Gaps = 52/346 (15%)
Query: 48 HTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRIL 107
+T + + G Y S G++ ++ F +F + + LT+ + FDL+ ID +IANAFRRI+
Sbjct: 14 NTTSTDFPGNYQSEGLE--WDVEKFRESFDIHISSLTEKEANFDLVHIDTSIANAFRRIM 71
Query: 108 IAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NT 163
IAE+P++A E V NNTSVIQDEVLAHR+GLIP+ VDP ++ EK NT
Sbjct: 72 IAEVPSVAAEYVYFMNNTSVIQDEVLAHRIGLIPLRVDPDKLSWIDSELPDEEKFTDENT 131
Query: 164 IVFKLHVLCERG--------GPRLT-----VKTNELKWLPNGSELPLETKPDSNPSSKPR 210
IV L C R P++ V +LK+ P G + L
Sbjct: 132 IVITLDAKCTRNPDAPKDATDPKVLYRNAHVYARDLKFEPQGKQAEL------------- 178
Query: 211 TYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
F++ P+ + DI IA+L PGQEI L AH + GIG HAK+SPVAT
Sbjct: 179 --------------FADQPVEAIDPDILIAKLRPGQEISLRAHCILGIGGDHAKFSPVAT 224
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
A YR+LP I + + E A++ K P V I D K A V R T+ RE LR
Sbjct: 225 ASYRLLPHINITSPISGESAKRFQKCFPSGVIGIND----KDEAFVKDARKDTVSREVLR 280
Query: 330 CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
EE++ +V + RV+DHF+F +ESTGA++PE +F ++V+IL++K E
Sbjct: 281 -HEEFQNKVKLGRVRDHFVFNVESTGAMTPEEIFFKSVRILKNKAE 325
>gi|145517526|ref|XP_001444646.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412068|emb|CAK77249.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 172/327 (52%), Gaps = 45/327 (13%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+ F + + ++ T + + F++I IDA IAN+ RRI+IAE+PTMAI KV + NTS
Sbjct: 22 FNIKQFQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTS 81
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERG----------- 175
VI DEVLAHRLGLIPII DP F + + NE N+I F L+ CE+
Sbjct: 82 VIPDEVLAHRLGLIPIIADPLQFVEKDDQEEYNELNSIDFTLYAKCEKKPNSKQDDPIEQ 141
Query: 176 -GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML 234
TV ++ L W P G + L F+ NPIRP+
Sbjct: 142 QYTNTTVHSSSLIWQPKGQQAKL---------------------------FAANPIRPVH 174
Query: 235 -DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
+I IA+L QE+ L KG+GK HAKWSPV TA+Y+++P I + ++ + EKL
Sbjct: 175 SNIIIAKLRENQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQLDAQRQEKLA 234
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES 353
CP+ VF G + V PR CT CREC+R +EK V + ++ +HFIF+IES
Sbjct: 235 SICPMKVF-----GIKGNQIKVVNPRNCTTCRECVREANGFEKDVELNKIDNHFIFSIES 289
Query: 354 TGALSPETLFTEAVKILEDKCERVITE 380
G + + +A+ + K + I E
Sbjct: 290 VGQYEAKDIMLQAIDVFRSKVQLYIKE 316
>gi|388582543|gb|EIM22847.1| RNA polymeras-like protein I subunit hRPA39, partial [Wallemia sebi
CBS 633.66]
Length = 362
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 183/338 (54%), Gaps = 42/338 (12%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y G + L+ F N V + +D++EFDLIG+D +IANA RR++IAE+PT
Sbjct: 25 FPGNYP--GENLEWNLEAFKKNLTTHVNAVAEDEIEFDLIGVDPSIANALRRVMIAEVPT 82
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCE 173
+A+E V + NNTSV+ DEV+AHRLGL+PI+ D E + D+ N++NTIVF L V C
Sbjct: 83 VAVENVFVFNNTSVMHDEVMAHRLGLVPILFDAERLEEFQKGDSPNDQNTIVFTLQVACT 142
Query: 174 RGGP-------------RLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220
R V + + KW+P G Q
Sbjct: 143 RKAKVAAGETDPDKIYENHKVYSKDFKWVPQG-------------------------GQA 177
Query: 221 LLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
P F++NP R +I I +L PGQ I+LE H VKG+G+ HAK+SP ATA YR+LP +
Sbjct: 178 SDPLFTDNPPRVAYPEILITKLRPGQSIDLELHCVKGLGQDHAKFSPAATASYRLLPTVK 237
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVS 339
L + ++ E AE V ++ + G+K A PR T+ RE LR E++ V
Sbjct: 238 LHQPIKSEHAELFASCFSEGVVEVRENKKGEKEAHYVNPRKDTVSREVLR-HPEFDGVVE 296
Query: 340 IRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+ R++DHFIF IE+TGA+ + + +++ K +++
Sbjct: 297 LGRIRDHFIFNIETTGAVKSVDMLPRSCNVIKSKVQKI 334
>gi|20129237|ref|NP_608885.1| CG3756 [Drosophila melanogaster]
gi|7296912|gb|AAF52185.1| CG3756 [Drosophila melanogaster]
gi|21429120|gb|AAM50279.1| LP03982p [Drosophila melanogaster]
Length = 333
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 188/333 (56%), Gaps = 46/333 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ + F ++++R +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 29 DDVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCER---GGPR 178
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ F+L V C R G
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKD 148
Query: 179 LT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+ V + LKWLP G + + + E + N
Sbjct: 149 QSNFDDIYKNHKVYSGHLKWLPKGKQAQIYS------------------------ESAVN 184
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
I DI IA+L PG E++L AVKG+G+ HAK+SPVATA YR+LP I L +V +D
Sbjct: 185 CIHD--DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKD 242
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R T R R + V++ R++DH+I
Sbjct: 243 AYLLQNCFSPGVIGIDE----NETAYVKDARYDTCSRNVYRY-PQLNDAVTLARIRDHYI 297
Query: 349 FTIESTGALSPETLFTEAVKILEDKCERVITEL 381
F++ES GAL P+ +F EAVK+L+ KC +I E+
Sbjct: 298 FSVESVGALKPDVIFLEAVKVLKRKCRALIDEI 330
>gi|326428554|gb|EGD74124.1| RNA polymerase subunit I [Salpingoeca sp. ATCC 50818]
Length = 328
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 193/361 (53%), Gaps = 56/361 (15%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RT V+ D +H N AY F F++E+ + DMEFD+IG+
Sbjct: 4 RTHVEMARDHVLHPSNPDAQDAY---------DFQAFKEKFKIEMQAIDGMDMEFDMIGV 54
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE- 154
DAAIANA RRILI+E+PTMAIE+ I +N+SV+ DE+LAHR+GLIP+ VD R F + E
Sbjct: 55 DAAIANAVRRILISEVPTMAIEQAYIYHNSSVLPDEMLAHRIGLIPLAVDARRFRTLEED 114
Query: 155 NDTSNEKNTIVFKLHVLCE-RGGPRL------------TVKTNELKWLPNGSELPLETKP 201
N+ N+ NT+VF L V C+ R G + V ++++KW P G++
Sbjct: 115 NNEMNDLNTLVFDLDVECKHREGAKAGETDKNKKYINHMVMSSDIKWQPKGNQ------- 167
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
K R T+ + DI I L PGQ + +E H KG+GK H
Sbjct: 168 ------KDRFKTAICPVHE--------------DIPIVELRPGQRVSMELHCSKGVGKLH 207
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AKWSPVATA YR P IVL + V + A +L + V ++ D A V RA
Sbjct: 208 AKWSPVATASYRNAPHIVLKQRVTGDLAYRLQQCFTDGVIEVRD-----GEAEVVNSRAD 262
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+ RE LR ++ V R ++HFIF +ESTGAL P+ L EAV +L+DKC R++ +L
Sbjct: 263 MMSREHLR-HDDLAPLVHTTRRRNHFIFQVESTGALEPDVLVCEAVGVLKDKCSRLLDQL 321
Query: 382 S 382
+
Sbjct: 322 N 322
>gi|195576648|ref|XP_002078187.1| GD23312 [Drosophila simulans]
gi|194190196|gb|EDX03772.1| GD23312 [Drosophila simulans]
Length = 333
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 188/333 (56%), Gaps = 46/333 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ + F ++++R +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 29 DDVFSIQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCER---GGPR 178
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ F+L V C R G
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKD 148
Query: 179 LT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+ V + LKWLP G + + + E + N
Sbjct: 149 QSNFDDIYKNHKVYSGHLKWLPKGKQAQIYS------------------------ESAVN 184
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
I DI IA+L PG E++L AVKG+G+ HAK+SPVATA YR+LP I L +V +D
Sbjct: 185 CIHD--DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVTGKD 242
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R T R R + V++ R++DH+I
Sbjct: 243 AYLLQNCFSPGVIGIDE----NETAYVKDARYDTCSRNVYRY-PQLNDAVTLARIRDHYI 297
Query: 349 FTIESTGALSPETLFTEAVKILEDKCERVITEL 381
F++ES GAL P+ +F EAVK+L+ KC +I E+
Sbjct: 298 FSVESVGALKPDVIFLEAVKVLKRKCRALIDEI 330
>gi|261196646|ref|XP_002624726.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595971|gb|EEQ78552.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239609550|gb|EEQ86537.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327350214|gb|EGE79071.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 380
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 206/378 (54%), Gaps = 49/378 (12%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR + N + + + + G + G ++ +D F N +V + + F L+G
Sbjct: 13 QRKVIGINAETVTNISSTDFPGHWP--GENHEWSIDVFKRNLKVTFHKNEPYEASFSLVG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP------RL 148
+DAAIANAFRRI+IAE+P++AIE V I NNTSVIQDEVLAHRLGL+P+ R
Sbjct: 71 VDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGAAEGINWLRW 130
Query: 149 FEYMSEN--DTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
F +E D+ +E NTIV L V C + P+ + + + L N + +
Sbjct: 131 FRQPTEGKPDSGSELSDSNTIVLHLSVECTK-NPKASANEEDPQKLYNHAHV-------- 181
Query: 204 NPSSKPRTYTSFSSSQDLLPE-----FSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
+K T+ + PE S NP DI +A+L PGQ+I++E H +KGIG
Sbjct: 182 --YAKDITFHPVGRQEAYFPEPYGAIRSANP-----DILLAKLRPGQKIDIEMHCIKGIG 234
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS---------- 308
HAK+SPVATA YR+LP+I +L + +DA K + P V I+ + +
Sbjct: 235 ADHAKFSPVATASYRLLPDIRILRPILGQDALKFARCFPKGVIGIDSVSAEEASQAGSGY 294
Query: 309 ----GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
G+K+A V P T+ RECLR EE+ +V + R++DHFIF +ESTG + LF
Sbjct: 295 EGHEGEKKAVVLDPFKDTVSRECLRH-EEFRGKVKLGRIRDHFIFNVESTGQFRSDVLFL 353
Query: 365 EAVKILEDKCERVITELS 382
E+VK+L+ KC R+ +L+
Sbjct: 354 ESVKVLKLKCRRLKRDLA 371
>gi|452979634|gb|EME79396.1| hypothetical protein MYCFIDRAFT_216428 [Pseudocercospora fijiensis
CIRAD86]
Length = 392
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 148/378 (39%), Positives = 204/378 (53%), Gaps = 37/378 (9%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR V N + +T + G Y D++ L+ F NN +VE + + + F LIG
Sbjct: 14 QRRIVNINPETVTNTASTDIPGHYGP-AQDDTWNLERFRNNLQVEFRQNEQFNSAFSLIG 72
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-- 152
+DA+IANA+RRIL+AELPT+AIE V I +NTS+IQDEVLAHRLGLIP+ +M
Sbjct: 73 VDASIANAYRRILLAELPTLAIEDVFIFDNTSIIQDEVLAHRLGLIPLTGGKDGLRWMHW 132
Query: 153 ---------------------SENDTSN----EKNTIVFKLHVLCERGGPRLTVKTNELK 187
DTS+ + NT+V L+V C R + + K
Sbjct: 133 FKKPPPQSDYAARALWEQEQEESGDTSSSVNSDFNTVVMTLNVTC-RWKNKEEDGIDGKK 191
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF--SNNPIRPML-DITIARLGPG 244
GS P E +SN + T F L E+ N IRP+ +I IA+L PG
Sbjct: 192 VAQEGSTDPTEKYVNSNVYAHQMT---FEPQGKLQREYFGGENAIRPVNPNILIAKLRPG 248
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
Q I + H KGIG HAK+SPVATA YR+LP+I + + + DA+ K P V +E
Sbjct: 249 QTINVRMHCCKGIGADHAKFSPVATASYRLLPDIKITKPIVGADAKAFQKCFPRGVIGLE 308
Query: 305 DIG-SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
D SG K+A V P T+ RECLR +E++ +V + R++DHFIF+IESTG + LF
Sbjct: 309 DDKESGSKKAVVIDPYKDTVSRECLRY-DEFKDKVKLGRIRDHFIFSIESTGQFDSDELF 367
Query: 364 TEAVKILEDKCERVITEL 381
++V++L+ K ER L
Sbjct: 368 IDSVRLLKAKAERFKRHL 385
>gi|169603299|ref|XP_001795071.1| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
gi|160706369|gb|EAT88418.2| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
Length = 350
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 194/345 (56%), Gaps = 48/345 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
++ LD+F +NF+V+ + D F L GID ++ANAFRRIL+AE+PT+AIE V I
Sbjct: 14 NHEWDLDYFKDNFKVKFHTHSPHDTSFSLTGIDTSVANAFRRILLAEIPTLAIEDVFIYQ 73
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPR----LFEYMSEND------TSNEKNTIVFKLHVLC- 172
NTS+IQDEVLAHRLGLIP+ + L Y E D T ++ NT++ KL V C
Sbjct: 74 NTSIIQDEVLAHRLGLIPLCGSHKGLRWLKWYKKETDDDEGSGTPSDYNTVIMKLDVECS 133
Query: 173 -ERGGPRLTVKTNELKWLPNGSELPLETKPDS-----NPSSKPRTYTSFSSSQDLLPEFS 226
+ GG + V+ ET PD N +K + D P S
Sbjct: 134 WQEGGLQRAVQG--------------ETDPDKLYIGHNVYAKDLVWEPLGKQFDEFP--S 177
Query: 227 NNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
IR DI I ++ PGQ+I+L HA+KGIG+ HAK+SPVATA YR++P I +L+ +
Sbjct: 178 GEEIRATNPDILIVKMRPGQKIQLSMHAIKGIGQDHAKFSPVATASYRLMPTIDILKPIV 237
Query: 286 DEDAEKLVKTCPVNVFDIEDIGS-------------GKKRATVAQPRACTLCRECLRCGE 332
DA+K + P V +E + S G+ +A V P T+ RECLR
Sbjct: 238 GADAKKFARCFPRGVIKLETVTSEDVEKNTELAGQEGESKAVVDDPMKDTVSRECLR-HP 296
Query: 333 EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
E++ +V++ R++DHFIF +ESTG + LF E+VK+L+ KC+R+
Sbjct: 297 EFKDKVNLGRIRDHFIFRVESTGQWESDELFLESVKLLKVKCQRI 341
>gi|255716882|ref|XP_002554722.1| KLTH0F12056p [Lachancea thermotolerans]
gi|238936105|emb|CAR24285.1| KLTH0F12056p [Lachancea thermotolerans CBS 6340]
Length = 350
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 183/323 (56%), Gaps = 36/323 (11%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D + L+ F N F V + L + FDL+ +DA+IANAFRRI+IAE+P++A E V N
Sbjct: 44 DAAWNLERFKNTFDVNITSLDDREANFDLVNVDASIANAFRRIMIAEVPSVAAEYVYFFN 103
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLCERGGPRL 179
NTSVIQDEVLAHR+GL P+ VDP + ++ E + ++NTIV L+V C R
Sbjct: 104 NTSVIQDEVLAHRIGLTPLKVDPDMLSWVDTSVPEAERFTDENTIVLTLNVRCTRN---- 159
Query: 180 TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE------FSNNPIRPM 233
P K ++P R ++ P+ F+ NP+ P
Sbjct: 160 ----------------PDAPKDCTDPKILYRNAHIYARDLKFEPQGKQRETFAKNPVVPA 203
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L AH V GIG HAK+SPV+TA YR++P I + + + E A++
Sbjct: 204 DPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVSTASYRLMPHINITQPITGESAQRF 263
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
K V I D G A V R T+ RE LR EE+E +V + RVK+HFIF +E
Sbjct: 264 AKCFSPGVIGINDNGE----AFVKDARHDTVSREVLR-HEEFEGKVKLGRVKNHFIFNVE 318
Query: 353 STGALSPETLFTEAVKILEDKCE 375
S GA++PE +F ++V+IL++K E
Sbjct: 319 SAGAMTPEEIFFKSVRILKNKAE 341
>gi|345492750|ref|XP_003426918.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Nasonia vitripennis]
Length = 345
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 188/322 (58%), Gaps = 25/322 (7%)
Query: 69 LDHFCNNFRVEVIRLTKD--DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+D F F+++++ +++ ++EFD+IG AA+ANA+RRI+++E+P+MAIEKV + NNTS
Sbjct: 36 IDKFKKAFQIKIVSESENKCELEFDIIGCSAALANAYRRIMLSEVPSMAIEKVYMINNTS 95
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVK 182
+IQDEVLAHRLGL+P+ DPRLFEY S+ E ++T+ +++ +C
Sbjct: 96 LIQDEVLAHRLGLLPLKADPRLFEYPSKTTADEEEVSDQDTLRYEIKAIC---------- 145
Query: 183 TNELKWLPNG---SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIA 239
KW P+ S P + +N SK + +L P+ DI I
Sbjct: 146 ----KWNPHAPKDSRRPDDIYCGNNVYSKDIKWNPIGRQNELYPDGEKQFGMIADDILIC 201
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN 299
++ P QEI HAVKGIGK HAK+SPVATA YR+LPEI +++ V E AE+
Sbjct: 202 KMRPNQEIHAYMHAVKGIGKDHAKFSPVATATYRLLPEIQIIKPVRGEAAERFKSCFSPG 261
Query: 300 VFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSP 359
V +I + GK+ A V R + R R ++ + V + RV DHFIFT+ES GAL
Sbjct: 262 VIEIVETTKGKE-ARVKNARYDSCSRNVFR-HDDLKDCVQLGRVPDHFIFTVESVGALPS 319
Query: 360 ETLFTEAVKILEDKCERVITEL 381
LF EAVK+L+ KC+ + EL
Sbjct: 320 SVLFIEAVKVLKKKCKIFMEEL 341
>gi|406866169|gb|EKD19209.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 379
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/386 (38%), Positives = 210/386 (54%), Gaps = 53/386 (13%)
Query: 29 PPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD 87
P E +R R V N + + + G Y G D+S + F +F+V+ +
Sbjct: 10 PSQAELERRRIVGINSETVTDITSTDFPGHYP--GEDHSWDVKKFRKDFQVKFHHNDPTE 67
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII-VDP 146
F LIG+DA++ANAFRRI+IAE+PT+AIE V I NNTS+IQDEVLAHRLGLIP+ +
Sbjct: 68 ASFSLIGLDASVANAFRRIMIAEIPTLAIENVYIYNNTSIIQDEVLAHRLGLIPLKGGNE 127
Query: 147 RLFEYM----------SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +Y+ E+ + + NTI+ +L+V C + P G + P
Sbjct: 128 GLLDYLKWLKKPEESSQESPVNYDYNTILLELNVECTKNHD-----------APKGEKDP 176
Query: 197 LETKPDSNPSSKPRTYTSFS------SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
L +++ +K + F S +D + + NP DI IA+L PGQ IELE
Sbjct: 177 LVLYHNAHIYAKDIKFKPFGNQHKYFSGEDAIE--TTNP-----DILIAKLRPGQCIELE 229
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI------- 303
HA+KG+G HAK+SPVATA YR+LP I +L+ + +DAEK P V I
Sbjct: 230 MHAIKGVGSDHAKFSPVATASYRLLPTISILKPILGKDAEKFKSCFPEGVIGIDRVTKKE 289
Query: 304 -EDIGS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGA 356
E +GS G+K+A V T+ RECLR EE++ +V + R++DHFIF +ES G
Sbjct: 290 AEMVGSGYEGHEGEKKAVVFDTMKDTVSRECLRH-EEFKDKVKLGRIRDHFIFQVESLGQ 348
Query: 357 LSPETLFTEAVKILEDKCERVITELS 382
+ LF E++K+L KCE + L+
Sbjct: 349 WKSDELFMESIKVLRLKCENMKRSLN 374
>gi|254580391|ref|XP_002496181.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
gi|238939072|emb|CAR27248.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
Length = 335
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 191/330 (57%), Gaps = 49/330 (14%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
DN ++ F N F V + LT+ + FDL+ +D +IANAFRRI+I+E+P++A E V N
Sbjct: 28 DNVWDIEKFKNTFDVRIGSLTEREANFDLVHVDTSIANAFRRIMISEVPSVATEYVYFLN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLCERG---- 175
NTSVIQDEVLAHR+GL+P+ VDP + + + E + ++NTIV L+V C R
Sbjct: 88 NTSVIQDEVLAHRIGLVPLKVDPDMLTWVDHSLPEEEKFTDENTIVMTLNVKCTRNPDAP 147
Query: 176 ----GPRLTVKTN-----ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
P++ + + +LK+ P GS+ +ET F+
Sbjct: 148 KDCTDPKILYRNSHIYARDLKFEPQGSQ--VET-------------------------FA 180
Query: 227 NNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
P+ P DI +A+L PGQEI L AH + G+G HAK+SPVATA YR+LP I + E ++
Sbjct: 181 KCPVIPTDPDILLAKLRPGQEISLRAHCILGVGSDHAKFSPVATASYRLLPHIDIREPIK 240
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
E A+K K P V I + A V R T+ RE LR EE+ +V + RV+D
Sbjct: 241 GELAQKFQKCFPPGVIGINE---STDEAYVQDARKDTVSREVLR-HEEFSNKVKLGRVRD 296
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCE 375
HF+F +ESTGA++PE +F ++V++L++K E
Sbjct: 297 HFVFNVESTGAMTPEEIFFKSVRVLKNKAE 326
>gi|195114368|ref|XP_002001739.1| GI17014 [Drosophila mojavensis]
gi|193912314|gb|EDW11181.1| GI17014 [Drosophila mojavensis]
Length = 333
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/334 (39%), Positives = 188/334 (56%), Gaps = 47/334 (14%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
D +D F + +V ++R ++ +EFDLIG+ AIANAFRR++++E+P+MAIEKV I
Sbjct: 28 DEVFNMDVFKSKLQVVIVRNDEEHGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIY 87
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGP--- 177
NNTS+IQDEVLAHR+GL+P+ DPRLF Y ++ D E++T+ ++L V C R
Sbjct: 88 NNTSIIQDEVLAHRMGLLPLRADPRLFAYRTDESTDQGTEQDTLEYELKVKCTRRKDASK 147
Query: 178 ----------RLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
V + LKWLP G + + ++ SS + E
Sbjct: 148 DQSNFDDIYRNHKVYSGHLKWLPKGKQAQIYSE----------------SSVGCIHE--- 188
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
DI IA+L PG E++L AVKGIGK HAK+SPVATA+YR+LP+I L +V +
Sbjct: 189 -------DILIAQLRPGHELDLRLIAVKGIGKDHAKFSPVATAYYRLLPQINLTREVRGK 241
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
DA L V I++ + A V R + R R V++ RV+DH+
Sbjct: 242 DAYLLQSCFSPGVIGIDE----NECAYVKDARYDSCSRNVFRY-PHLADAVTMGRVRDHY 296
Query: 348 IFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
IF++ES GAL PE +F EAV++L+ KC I E+
Sbjct: 297 IFSVESVGALKPEVIFLEAVRVLKKKCRSFIDEI 330
>gi|403213911|emb|CCK68413.1| hypothetical protein KNAG_0A07600 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 195/334 (58%), Gaps = 50/334 (14%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S DN+ ++ F F +++ +++ + FDL+ ID ++ANAFRRI+I+E+P++A E V
Sbjct: 24 SSARDNAWDVEKFRERFDIKISSMSEREANFDLVHIDTSVANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLCERG 175
+ NNTSVIQDEVLAHR+G+IP+ VDP + + +SE + ++NT+V L+V C R
Sbjct: 84 YVMNNTSVIQDEVLAHRIGMIPLKVDPDMLTWIDQSLSEEEKFTDENTVVLTLNVKCTRN 143
Query: 176 --------GPRL-----TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLL 222
P++ +V +L++ P G + LET
Sbjct: 144 LNAPKDCTDPKILYKNSSVYARDLRFEPQGKQ--LET----------------------- 178
Query: 223 PEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLL 281
F++ P+ P DI +A+L P QEI L H + GIG HAK+SPVATA YR+LP I +L
Sbjct: 179 --FADCPVVPSDPDILLAKLRPNQEISLRVHCILGIGSDHAKFSPVATASYRLLPHINIL 236
Query: 282 EDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIR 341
E + E A++ P V I+ G +A V R T+ RE LR EE++ +V +
Sbjct: 237 EPITGESAKRFQACFPQGVIGIDSEG----KAVVENARKDTVSREVLRY-EEFKDKVKLG 291
Query: 342 RVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
RV+DHFIF +ESTGA++PE +F ++V+IL++K E
Sbjct: 292 RVRDHFIFNVESTGAMTPEEIFFKSVRILKNKAE 325
>gi|193704512|ref|XP_001945905.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Acyrthosiphon pisum]
Length = 325
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 177/315 (56%), Gaps = 38/315 (12%)
Query: 70 DHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
D F NF++ +I + +D+EFDL+GID A+AN+ RR++I+E+P+MAIEKV I NTS I
Sbjct: 26 DEFVKNFKINIISRSDNDLEFDLVGIDVAVANSLRRVIISEVPSMAIEKVHIYQNTSYIL 85
Query: 130 DEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGG---------PRL 179
DE+LAHRLGLIP+ DPR F+ EN NE +++V+++ + C +
Sbjct: 86 DEILAHRLGLIPLKADPRQFKMKEDENSEPNEHDSLVYEMKIKCTKKDLDALAHKQFISF 145
Query: 180 TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIA 239
V +KWLP G++ + T+ D S DI IA
Sbjct: 146 PVYAKHIKWLPLGNQKDIFTEKDVGIISD--------------------------DILIA 179
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN 299
+L PGQEIEL+ AVKGI K HAK+ V TAWYRM+P I LL++++ DA L P
Sbjct: 180 KLRPGQEIELKMFAVKGIPKDHAKFQSVCTAWYRMMPNIKLLDEIKGNDAVLLQSCFPKG 239
Query: 300 VFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSP 359
V ++ + G A V R R R ++++ ++ + +++DHFIFTIES GA+ P
Sbjct: 240 VIGLKSV-KGVLIAFVEDSRKDNSSRNVFRY-KQFDNKILLSKIQDHFIFTIESVGAMDP 297
Query: 360 ETLFTEAVKILEDKC 374
+F EA+ IL K
Sbjct: 298 SLIFLEALNILTRKV 312
>gi|195386486|ref|XP_002051935.1| GJ24400 [Drosophila virilis]
gi|194148392|gb|EDW64090.1| GJ24400 [Drosophila virilis]
Length = 333
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 191/335 (57%), Gaps = 49/335 (14%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIA 122
D +D F + +V ++R +++ +EFDLIG+ AIANAFRR++++E+P+MAIEKV I
Sbjct: 28 DEVFNMDVFKSKLQVVIVRNDEENGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIY 87
Query: 123 NNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCERGG---- 176
NNTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ ++L V C R
Sbjct: 88 NNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEQGTEQDTLEYELKVKCTRRKDASK 147
Query: 177 ---------PRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
V + LKWLP G + + T+ +S + E
Sbjct: 148 DQSNFDDIYKNHKVYSGHLKWLPKGKQGQIYTE----------------NSVGCIHE--- 188
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
DI IA+L PG E++L AVKG+GK HAK+SPVATA+YR+LP+I L +V +
Sbjct: 189 -------DILIAQLRPGHELDLRLIAVKGLGKDHAKFSPVATAYYRLLPQINLTREVTGK 241
Query: 288 DAEKLVKTCPVNVFDIEDIGSGKKR-ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
DA L+++C F IG + A V R + R R V++ RV+DH
Sbjct: 242 DA-YLLQSC----FSPGVIGIDENECAYVKDARYDSCSRNVYRY-PHLADAVTMARVRDH 295
Query: 347 FIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+IF +ES GAL PE +F EAVK+L+ KC I E+
Sbjct: 296 YIFNVESVGALKPEVIFLEAVKVLKKKCRSFIDEI 330
>gi|354546273|emb|CCE43003.1| hypothetical protein CPAR2_206460 [Candida parapsilosis]
Length = 336
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 198/351 (56%), Gaps = 39/351 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H SG D S ++ F +F +++ +++ FD
Sbjct: 9 IEYNRVTNTSSTDFPGHQS----SG-------DFSWDIEKFKKSFDIKITNVSERVANFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+IAE+P++A+E V NTSVIQDEVLAHR+GL+P+ VDP +
Sbjct: 58 LIHIDTSIANAFRRIMIAEVPSVAVETVYSFMNTSVIQDEVLAHRIGLVPLKVDPDSLTW 117
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERG--GPRLTVKTNELKWLPNGSELPLETKPDSNP 205
+ END E NTIV L V C + P+ + NEL N L+ +P
Sbjct: 118 VDKSVDENDRYTEDNTIVLSLDVTCTKNPHAPKNSTNPNELYRNSNVYAKDLKFEP---- 173
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
SQ L ++ +NP+ P +I +A+L PGQEI L AH + G+G HAK+
Sbjct: 174 ----------QGSQ--LEKYKDNPVVPTDPNILLAKLRPGQEISLRAHCILGVGADHAKF 221
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPVATA YR+LP I + E + E A+K K P V +I+ G A VA R T+
Sbjct: 222 SPVATASYRLLPVIDIKEPITGELAKKFQKCFPPGVIEIDSKG----EAYVADARKDTVS 277
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
RE LR E+ +V + R +D+FIF +ESTGA+ PE +F ++V++L++K E
Sbjct: 278 REVLR-HPEFNGKVKLGRQRDYFIFQVESTGAMPPEEIFFKSVRVLKNKAE 327
>gi|255933139|ref|XP_002558040.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582659|emb|CAP80852.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 205/376 (54%), Gaps = 43/376 (11%)
Query: 28 LPPHIEFQRTRV-QCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E QR R+ N + + + + G + G + LD F N F+VE R +
Sbjct: 5 VPSQEELQRRRIIGINAETVTNIPSTDFPGHWP--GESHGWALDEFKNKFQVEFHRNERF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---- 142
+ F LIG+DAA+ANAFRRIL+AE+PT+AIE I NNTSVIQDEVLA RLGLIP+
Sbjct: 63 EASFSLIGLDAAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLASRLGLIPLKGSI 122
Query: 143 --IVDPRLFEYMSENDTSNEK-----NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
I F+ SE+ + E NTIV L V C + NE + +
Sbjct: 123 EGINWMHWFKKASEDGSEEEDGPCDFNTIVLHLDVECYK---------NE--YADKDEQD 171
Query: 196 PLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
P + +++ +K Y Q + + + P+ P DI IA+L PGQ+IE+E H
Sbjct: 172 PRKLYTNAHVYAKDLMYMPVGRQEQYFVGDGAIAPVNP--DILIAKLRPGQKIEMELHCQ 229
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS------ 308
KGIG HAK+SPVATA YR+LP+I + + +DA+K K P V +E + S
Sbjct: 230 KGIGADHAKFSPVATASYRLLPDIKIERPIIGDDAKKFAKCFPKGVIGLEPVTSEEAAQP 289
Query: 309 --------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
G+++A V T+ RECLR EE++ +V + RV+DHFIF +ESTG +
Sbjct: 290 GSGYEGHAGEQKAVVKDAFNDTVSRECLR-HEEFQGKVKLGRVRDHFIFNVESTGQFESD 348
Query: 361 TLFTEAVKILEDKCER 376
LF EA+K+++ KC R
Sbjct: 349 MLFLEAIKVMKLKCNR 364
>gi|241951478|ref|XP_002418461.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
gi|223641800|emb|CAX43762.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
Length = 336
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 195/349 (55%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H +N G YA ++ F NNF +++ L++ FD
Sbjct: 9 IEYNRVTNTTSTDFPGHQQN----GDYA-------WDIEKFKNNFEIKITNLSERTGTFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+IAE+P++A E V + NTSVIQDEVLA R+GLIP +DP +
Sbjct: 58 LIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDPDKLTW 117
Query: 152 MSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E ND E NTIV L V C + P S P E +S+ +
Sbjct: 118 VDETVDINDRFTEDNTIVLSLDVACSKN-----------PHAPKNSTDPRELYKNSHVYA 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + + ++ +F + P+ P DI +A+L PGQEI L AH V GIG HAK+SP
Sbjct: 167 KDFKFEPHGNQEE---KFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSP 223
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I + + + E A+K K P V I+ G +A V R T+ RE
Sbjct: 224 VATASYRLLPVIDIKQPITGELAKKFQKCFPPGVIGIDTNG----KAYVKDARKDTVSRE 279
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR E++ +V + R +DHFIF +ESTGA+ P +F ++V++L++K E
Sbjct: 280 VLR-HPEFDGKVQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAE 327
>gi|302693813|ref|XP_003036585.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
gi|300110282|gb|EFJ01683.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
Length = 354
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 196/363 (53%), Gaps = 53/363 (14%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR V + + + Y G + G D+S L+ F N +V+V RL+ +EFDL+G
Sbjct: 5 QRRLVGITAERVTNVSSTDYPGHH--YGEDHSWNLEEFKRNLKVKVQRLSNRSIEFDLVG 62
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANAFRRI+IAE+PT+AIE V + +NTSVI DEVLAHRLGL+P+ VDP +
Sbjct: 63 VDASIANAFRRIMIAEVPTIAIENVYVWDNTSVIVDEVLAHRLGLVPLNVDPD--QMQPR 120
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLT-------------VKTNELKWLPNGSELPLETKP 201
D +++TI+F L V C R V ++ LKW P G + +
Sbjct: 121 KDIPTDRDTIIFDLAVACTRKSHSSANATEPEDLYDNHEVLSSHLKWRPVGEQEEV---- 176
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKT 260
F+N P P +I +A+L PGQ + +E HAVKG+GK
Sbjct: 177 -----------------------FANKPPAPTNPNIVLAKLRPGQAVHMELHAVKGVGKD 213
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP-- 318
HAK+SPVATA YR+LP I + + + E A+K K V ++ +A P
Sbjct: 214 HAKFSPVATASYRLLPHIKIKKPIPPELADKFQKCFSPGVIRVD----PNTKAVSVDPKN 269
Query: 319 -RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
R T+ RE LR E++ V + RV+DHF+F++ES A +PE L E++KIL +K + V
Sbjct: 270 VRRDTVSREVLR-HPEFQDSVELSRVRDHFLFSVESESAYAPEWLLAESIKILREKVKEV 328
Query: 378 ITE 380
E
Sbjct: 329 KAE 331
>gi|392573616|gb|EIW66755.1| hypothetical protein TREMEDRAFT_34640 [Tremella mesenterica DSM
1558]
Length = 347
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 187/337 (55%), Gaps = 42/337 (12%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y G D+S L F N V + RLT +EFDL+G+DA+IANA RR+LIAE+PT
Sbjct: 28 FPGHYP--GEDHSWNLKRFKENLIVSLQRLTPSTLEFDLVGVDASIANALRRVLIAEVPT 85
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE-NDTSNEKNTIVFKLHVLC 172
+AIE V + NNTS++QDEVL HRLGL+P+ +DPR + + N + + +T+VF+L V C
Sbjct: 86 VAIEDVYVWNNTSIMQDEVLCHRLGLVPLRIDPREMIFRANPNAGALDTDTVVFQLRVKC 145
Query: 173 ERG-------GPRLT-----VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220
+R P+ V T L+W P G++ T + +
Sbjct: 146 DRQPGTQGETDPKRKYWDSDVYTGMLEWEPAGAQ-----------------KTKWKRKEP 188
Query: 221 LLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
P+ P DI + +L PGQ I+L A KG G HAK+SPVATA YR+LP I++
Sbjct: 189 -------KPVDP--DILLCKLRPGQLIDLTCFARKGTGADHAKFSPVATASYRLLPHIII 239
Query: 281 LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSI 340
+ E +K V++ P V IE G+ + V R T+ RE LR E+E +V +
Sbjct: 240 RSPIPVEHQQKFVQSFPPGVIGIEKDKRGQPQCVVKNSRRDTVSREVLRHA-EFEDKVQL 298
Query: 341 RRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
R++DHFIF IES G PE L EA+KIL +K V
Sbjct: 299 TRIRDHFIFNIESVGQYKPEDLVPEAIKILLNKISAV 335
>gi|121716353|ref|XP_001275782.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
gi|119403939|gb|EAW14356.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
Length = 374
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 208/379 (54%), Gaps = 49/379 (12%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E +R R V N + + + + G + G + L+ F + FRVE R
Sbjct: 5 IPSQEELERRRIVGINAETVTNIPSTDFPGHWP--GESHEWNLEKFKDGFRVEFHRNDPF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---- 142
+ F LIG+D +IANAFRRIL+AE+PT+AIE V + NNTSVIQDEVLA RLGLIP+
Sbjct: 63 ESSFSLIGVDPSIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSV 122
Query: 143 --IVDPRLFEYMSENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPN---G 192
+ R F+ +E D + + NTIV +L V C PN G
Sbjct: 123 EGLNWMRWFKKPTEEDPDSGSNPADYNTIVLRLDVECAEN--------------PNAAPG 168
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEA 251
+ P + +++ +K TY + + + P+ P DI +A+L PGQ+I++E
Sbjct: 169 EDDPRKLYKNAHVYAKDITYHPVGRQEQFFTGDGAIQPVNP--DILVAKLRPGQKIDMEL 226
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--- 308
H +KGIG HAK+SPVATA YR++P+I +L + +DA+K K P V ++E + S
Sbjct: 227 HCIKGIGADHAKFSPVATASYRLMPDIKILRPIIGDDAKKFAKCFPKGVIELEPVTSTEA 286
Query: 309 -----------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
G+ +A V P T+ RECLR EE++ +V + R++DHFIF +ESTG
Sbjct: 287 AQKGSEYEGHAGELKAVVRDPFNDTVSRECLRH-EEFQGKVKLGRIRDHFIFNVESTGQF 345
Query: 358 SPETLFTEAVKILEDKCER 376
+ LF E+VK+L+ KC R
Sbjct: 346 ESDYLFLESVKVLKLKCAR 364
>gi|154279942|ref|XP_001540784.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
gi|150412727|gb|EDN08114.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
Length = 380
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 207/373 (55%), Gaps = 39/373 (10%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR + N + + + + G + G ++ +D F N +V + + F L+G
Sbjct: 13 QRKVIGINAETVTNISSTDFPGHWP--GENHEWSIDEFKRNLKVTFHKNEPYEASFSLVG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP------RL 148
+DAAIANAFRRI+IAE+P++AIE V I NNTSVIQDEVLAHRLGL+P+ R
Sbjct: 71 VDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRW 130
Query: 149 FEYMSEN--DTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
F +E D+ +E NT+V L+V C P+ + ++ + N + +
Sbjct: 131 FRQPTEGRPDSGSELADYNTVVLHLNVECT-NNPKASANEDDPQKRYNHAHV-YAKDITF 188
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+P + TY F ++ S NP DI +A+L PGQ+I++E H VKGIG HAK
Sbjct: 189 HPVGRQETY--FQEPDGVIR--SANP-----DILLAKLRPGQKIDIEMHCVKGIGADHAK 239
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------------G 309
+SPVATA YR+LP+I ++ + DA K + P V I+ + + G
Sbjct: 240 FSPVATASYRLLPDIKIIRPILGNDALKFARCFPKGVIGIDSVSAEEASRAGSGYEGHEG 299
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+K+A V P T+ RECLR +E++ +V + R++DHFIF +ESTG + LF E+VK+
Sbjct: 300 EKKAVVVDPFKDTMSRECLRH-DEFQGKVKLGRIRDHFIFNVESTGQFRSDVLFIESVKV 358
Query: 370 LEDKCERVITELS 382
L+ KC R+ +L+
Sbjct: 359 LKLKCRRLKRDLA 371
>gi|401840259|gb|EJT43153.1| RPC40-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 326
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 130/317 (41%), Positives = 191/317 (60%), Gaps = 25/317 (7%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
N ++ F + +V + L + + FDLI IDA+IANAFRRI+I+E+P +A E V NN
Sbjct: 29 NEWDVEVFKKHLKVNISSLDEREANFDLINIDASIANAFRRIMISEVPCVAAEYVYFFNN 88
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG--GPR 178
TSVIQDEVLAHR+GL+P+ VDP + ++ + +EK NTIV L+V C R P+
Sbjct: 89 TSVIQDEVLAHRIGLVPLKVDPDMLTWVDSSLPDDEKFTDENTIVLSLNVKCTRNPDAPK 148
Query: 179 LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITI 238
EL + L+ +P + R T+F++ + P P DI +
Sbjct: 149 DCTDPKELYNNAHVYARDLKFEP------QGRQSTTFAACSVV-------PADP--DILL 193
Query: 239 ARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPV 298
A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A++ K P
Sbjct: 194 AKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQSIKGESAKRFQKCFPP 253
Query: 299 NVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALS 358
V I+D + A V R T+ RE LR EE+ +V + RV++HFIF +ES GA++
Sbjct: 254 GVIGIDDTS---REAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFIFNVESAGAMT 309
Query: 359 PETLFTEAVKILEDKCE 375
PE +F ++V+IL++K E
Sbjct: 310 PEEIFFKSVRILKNKAE 326
>gi|156368414|ref|XP_001627689.1| predicted protein [Nematostella vectensis]
gi|156214606|gb|EDO35589.1| predicted protein [Nematostella vectensis]
Length = 342
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 200/369 (54%), Gaps = 63/369 (17%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
RTRVQ I+T + + G Y D++ + F F++ + RLT DMEFD+IGI
Sbjct: 8 RTRVQLQEHGLINTHSSDFPGNYTDY--DDTWTQEKFEEKFKINITRLTPSDMEFDMIGI 65
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN 155
DA++ANAFRRIL+AE+PTMAIEKV + NNTS+IQDEVLAHRLGLIPI DPRLF Y +
Sbjct: 66 DASVANAFRRILLAEVPTMAIEKVFLYNNTSIIQDEVLAHRLGLIPIHADPRLFNYKKQG 125
Query: 156 DT-SNEKNTIVFKLHVLC--ERGGPR-----------LTVKTNELKWLPNGSELPLETKP 201
D + + T+VF+L V C + P+ V T+ LKW+P
Sbjct: 126 DEEAQDDTTLVFELKVKCIKNKNAPKDATDPDELYINSKVTTDHLKWIPT---------- 175
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
P+ F QD IRP+ ++ QE++++ HAVKG+GK H
Sbjct: 176 -------PQQAQKFGP-QD---------IRPLSNVVF--FFTLQELDIKMHAVKGVGKDH 216
Query: 262 AKWSPV--ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
AK+SPV +TA YR+LPEI LL+ EDE A+KL V ++ + +K T Q
Sbjct: 217 AKFSPVGKSTASYRLLPEITLLKPCEDELADKLAACFSPGVIKVKTVN--EKNHTNDQNV 274
Query: 320 AC-TLCRECLRCGEEWEKRVSIRRVKDHFI------FTIESTGALSPETLFTEAVKILED 372
+LC +S +++ F+ ++ES GAL PE L EA+K+L
Sbjct: 275 GLRSLCNII-------SVYISENIIRNEFVEKNYTNVSVESIGALRPEVLVCEAIKVLIS 327
Query: 373 KCERVITEL 381
KC + I+EL
Sbjct: 328 KCRQFISEL 336
>gi|145518624|ref|XP_001445184.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412628|emb|CAK77787.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 172/327 (52%), Gaps = 45/327 (13%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+ F + + ++ T + + F++I IDA IAN+ RRI+IAE+PTMAI KV + NTS
Sbjct: 22 FNIKQFQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTS 81
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERG----------- 175
VI DEVLAHRLGLIPII DP F + + NE N+I F L CE+
Sbjct: 82 VIPDEVLAHRLGLIPIIADPLQFIEKDDQEEYNELNSIDFTLVAKCEKKPNSKHDDPIEQ 141
Query: 176 -GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML 234
TV ++ L W P G + L F+ NPIRP+
Sbjct: 142 QYTNTTVHSSSLIWQPKGQQAKL---------------------------FAANPIRPVH 174
Query: 235 -DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV 293
+I IA+L QE+ L KG+GK HAKWSPV TA+Y+++P I + ++ + EKL
Sbjct: 175 SNIIIAKLRENQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQLDAQRQEKLA 234
Query: 294 KTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES 353
CP+ VF G + V PR CT CREC+R +EK V + ++ +HFIF+IES
Sbjct: 235 SLCPMKVF-----GVKGNQIKVVNPRNCTTCRECVREANGFEKDVELNKIDNHFIFSIES 289
Query: 354 TGALSPETLFTEAVKILEDKCERVITE 380
G + + +A+++ K + I E
Sbjct: 290 VGQYEAKDIMLQAIEVFRSKVQLYIKE 316
>gi|358055076|dbj|GAA98845.1| hypothetical protein E5Q_05533 [Mixia osmundae IAM 14324]
Length = 368
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 193/337 (57%), Gaps = 39/337 (11%)
Query: 59 ASMGV-DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIE 117
A+ GV D + F + ++ L+ ++EFD+IGIDAAIANA RRI+IAE+PT+AIE
Sbjct: 44 ATAGVEDQGWNAEAFKAQLGISILSLSPSEIEFDIIGIDAAIANALRRIMIAEVPTVAIE 103
Query: 118 KVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCE-RGG 176
V + NNTS++QDEVL+ RLGL+P+ ++PR ++ + ++ + NT+VF L CE R G
Sbjct: 104 TVFVFNNTSIVQDEVLSQRLGLVPLKINPRQIDFKTPDEGPTDLNTVVFSLLAKCEHRPG 163
Query: 177 --------PRLTVKTN----ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE 224
L + +N +L+W P G++ E+ D++ +++PR QD
Sbjct: 164 HDPDEKDPDELYIDSNVFSGKLEWKPQGAQ---ESMFDTD-ATRPRPV------QD---- 209
Query: 225 FSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
DI +A+L PGQ I +E H KG GKTHAKWSPVATA YR++P I +L+ +
Sbjct: 210 ----------DILLAKLRPGQTISVELHCNKGNGKTHAKWSPVATASYRLMPHIRILKPI 259
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
+ EK V I+ G K +V PR T+ RE LR E+E VS+ RV+
Sbjct: 260 PEHLCEKFKSCFQPGVIGIKRDLDGTKCCSVDDPRRDTVSREVLR-HPEFEGYVSLGRVR 318
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
DHFI+ +ESTG PE L EA ++ K + V L
Sbjct: 319 DHFIYNVESTGQYEPEDLLEEACGVMLSKIQAVRASL 355
>gi|294894048|ref|XP_002774720.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
gi|239880227|gb|EER06536.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
Length = 310
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 169/299 (56%), Gaps = 42/299 (14%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
GID IANA RRI+IAE+PT+AIEK + NT VI DE+LAHRLGL+PI D +
Sbjct: 17 GIDPPIANALRRIMIAEIPTIAIEKCYVYQNTGVIHDEILAHRLGLVPIYCDIDSLKMRD 76
Query: 154 EN-------DTSNEKNTIVFKLHVLCERGGP---RLTVKTNELKWLPNGSELPLETKPDS 203
E+ D ++ I F L +C + P + V + +LKW+P +E E +
Sbjct: 77 EDAPPEQRDDVTDPDTWICFSLEKVCPQSHPPRESMPVYSGDLKWVPLNAEQ--EER--- 131
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHA 262
+ ++P RP+ D + I +L GQE+E++ KGIGK HA
Sbjct: 132 ---------------------YKDDPPRPVYDDVLITKLRCGQELEIKCFCCKGIGKIHA 170
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KWSPV TA YR++P+I+L E +E +A+K CP+ VFDIED A V PRACT
Sbjct: 171 KWSPVCTATYRLMPDIILKEPIEGAEAKKFKSVCPMGVFDIED-----GAAVVKNPRACT 225
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
CR+C+ G + +VS+ ++KDHFIFT+ES G + +F +A ++++KC V L
Sbjct: 226 TCRQCIEPGNGFADKVSLGKLKDHFIFTVESVGQIPAPQIFAQAAVVMQNKCRLVKKSL 284
>gi|225562812|gb|EEH11091.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
capsulatus G186AR]
Length = 380
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 207/373 (55%), Gaps = 39/373 (10%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR + N + + + + G + G ++ +D F N ++ + + F L+G
Sbjct: 13 QRKVIGINAETVTNISSTDFPGHWP--GENHEWSIDEFKRNLKITFHKNEPYEASFSLVG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP------RL 148
+DAAIANAFRRI+IAE+P++AIE V I NNTSVIQDEVLAHRLGL+P+ R
Sbjct: 71 VDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRW 130
Query: 149 FEYMSEN--DTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
F +E D+ +E NT+V L+V C P+ + ++ + N + +
Sbjct: 131 FRQPTEGRPDSGSELADYNTVVLHLNVECT-NNPKASANEDDPQKRYNHAHV-YAKDITF 188
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+P + TY F ++ S NP DI +A+L PGQ+I++E H VKGIG HAK
Sbjct: 189 HPVGRQETY--FQEPDGVIR--SANP-----DILLAKLRPGQKIDIEMHCVKGIGADHAK 239
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------------G 309
+SPVATA YR+LP+I ++ + DA K + P V I+ + + G
Sbjct: 240 FSPVATASYRLLPDIKIIRPILGNDALKFARCFPKGVIGIDSVSAEEASRPGSGYEGHEG 299
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+K+A V P T+ RECLR +E++ +V + R++DHFIF +ESTG + LF E+VK+
Sbjct: 300 EKKAVVVDPFKDTMSRECLRH-DEFQGKVKLGRIRDHFIFNVESTGQFRSDVLFIESVKV 358
Query: 370 LEDKCERVITELS 382
L+ KC R+ +L+
Sbjct: 359 LKLKCRRLKRDLA 371
>gi|33086616|gb|AAP92620.1| Ac2-127 [Rattus norvegicus]
Length = 260
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 124/269 (46%), Positives = 168/269 (62%), Gaps = 16/269 (5%)
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT-SNEKNTIVFKLHVLC 172
MA+EKVL+ NNTS++QDE+LAHRLGLIPI+ DPRLFEY + + E +T+ F+L V C
Sbjct: 1 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNPGEEEGTEIDTLQFRLQVRC 60
Query: 173 ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP 232
R P +++ P E + ++ T+ + D+ PE + P+
Sbjct: 61 TRN-PSAAKDSSD----------PNELYVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHD 109
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI IA+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP+I LLE VE E AE+L
Sbjct: 110 --DILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEEL 167
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
+ V ++++ GKK A VA R T RE R E+ +K V + RV+DH+IF++E
Sbjct: 168 SQCFSPGVIAVQEV-QGKKVARVANARLDTFSREIFR-HEKLKKAVRLARVRDHYIFSVE 225
Query: 353 STGALSPETLFTEAVKILEDKCERVITEL 381
STG L P+ L +EA+KIL KC R + EL
Sbjct: 226 STGVLPPDVLVSEAIKILMGKCRRFLDEL 254
>gi|341897190|gb|EGT53125.1| hypothetical protein CAEBREN_31421 [Caenorhabditis brenneri]
Length = 365
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 186/324 (57%), Gaps = 30/324 (9%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
L + +C+ +V+++ ++D M EFD+I I+A IANA RRIL+AE+PTMA+EK+ + N
Sbjct: 44 LNVSEYCDKIQVKMVNESEDKMTLEFDIIRIEAPIANALRRILLAEVPTMALEKIYLYQN 103
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKN-------------TIVFKLHV 170
TSVIQDEVL HRLGL+P+ VDPR F++ +E NEK ++FK++V
Sbjct: 104 TSVIQDEVLCHRLGLLPLRVDPRAFQFPTEKVVGINEKGVDCDEEPEGDPTRNLIFKINV 163
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C + + NG+ P + S+ S+ + + ++ + +N P
Sbjct: 164 ACTKN-----------RNAANGTTDPKQLYHHSSVYSRAFEWIPIGNQKEGYTK-NNKPK 211
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L ++ E AE
Sbjct: 212 MVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAE 271
Query: 291 KLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFT 350
+L V IE G+ KK A V RA T R R E+ + V + + K HFIF+
Sbjct: 272 RLQSVFSEGVIGIEKKGN-KKIAVVKDARADTCSRNVFR-HEDLAQVVHLGKNKQHFIFS 329
Query: 351 IESTGALSPETLFTEAVKILEDKC 374
+ESTGAL L EA K++E KC
Sbjct: 330 VESTGALKASELVVEACKVMESKC 353
>gi|238882305|gb|EEQ45943.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
albicans WO-1]
Length = 336
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 194/349 (55%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H +N G YA ++ F N F +++ L++ FD
Sbjct: 9 IEYNRVTNTTSTDFPGHQQN----GDYA-------WDIEKFKNKFEIKITNLSERTGTFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+IAE+P++A E V + NTSVIQDEVLA R+GLIP +DP +
Sbjct: 58 LIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDPDKLTW 117
Query: 152 MSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E ND E NTIV L V C + P S P E +S+ +
Sbjct: 118 VDETVDINDRFTEDNTIVLSLDVACSKN-----------PHAPKNSTDPRELYKNSHVYA 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + + ++ +F + P+ P DI +A+L PGQEI L AH V GIG HAK+SP
Sbjct: 167 KDFKFEPHGNQEE---KFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSP 223
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I + E + E A+K K P V I+ G +A V R T+ RE
Sbjct: 224 VATASYRLLPVIDIKEPITGELAKKFQKCFPPGVIGIDANG----KAYVKDARKDTVSRE 279
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR E++ +V + R +DHFIF +ESTGA+ P +F ++V++L++K E
Sbjct: 280 VLR-HPEFDGKVQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAE 327
>gi|195472829|ref|XP_002088701.1| GE11271 [Drosophila yakuba]
gi|194174802|gb|EDW88413.1| GE11271 [Drosophila yakuba]
Length = 333
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 186/333 (55%), Gaps = 46/333 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+ + + +++++ +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 29 DDVFSIQAYKEKLHIKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNEKNTIVFKLHVLCER---GGPR 178
NTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E++T+ F+L V C R G
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKD 148
Query: 179 LT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+ V + LKWLP G + + E + N
Sbjct: 149 QSNFDDIYKNHKVYSGHLKWLPKGKQ------------------------AQIYNESAVN 184
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
I DI IA+L PG E++L AVKG+G+ HAK+SPVATA YR+LP I L +V +D
Sbjct: 185 CIHD--DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVSGKD 242
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R T R R + V++ R++DH+I
Sbjct: 243 AYLLQSCFSPGVIGIDE----NETAYVKDARYDTCSRNVYRY-PQLNDAVTLARIRDHYI 297
Query: 349 FTIESTGALSPETLFTEAVKILEDKCERVITEL 381
F++ES GAL P+ +F EAVK+L+ KC I E+
Sbjct: 298 FSVESVGALKPDVIFLEAVKVLKRKCRAFIDEI 330
>gi|68482204|ref|XP_714986.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
gi|68482331|ref|XP_714923.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436522|gb|EAK95883.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436587|gb|EAK95947.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
Length = 369
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 138/349 (39%), Positives = 193/349 (55%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H +N YS ++ F N F +++ L++ FD
Sbjct: 42 IEYNRVTNTTSTDFPGHQQNGDYS-----------WDIEKFKNKFEIKITNLSERTGTFD 90
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI+IAE+P++A E V + NTSVIQDEVLA R+GLIP +DP +
Sbjct: 91 LIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDPDKLTW 150
Query: 152 MSE----NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E ND E NTIV L V C + P S P E +S+ +
Sbjct: 151 VDETVDINDRFTEDNTIVLSLDVACSKN-----------PHAPKNSTDPRELYKNSHVYA 199
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + + ++ +F + P+ P DI +A+L PGQEI L AH V GIG HAK+SP
Sbjct: 200 KDFKFEPHGNQEE---KFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSP 256
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I + E + E A+K K P V I+ G +A V R T+ RE
Sbjct: 257 VATASYRLLPVIDIKEPITGELAKKFQKCFPPGVIGIDANG----KAYVKDARKDTVSRE 312
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR E++ +V + R +DHFIF +ESTGA+ P +F ++V++L++K E
Sbjct: 313 VLR-HPEFDGKVQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAE 360
>gi|401623159|gb|EJS41266.1| rpc40p [Saccharomyces arboricola H-6]
Length = 335
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/352 (38%), Positives = 199/352 (56%), Gaps = 38/352 (10%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
+IE+ R + D P ++ G +N + F +F V + L + F
Sbjct: 6 NIEYNRVTNTTSTDFP----------GFSKDG-ENEWDVKKFKKDFEVNISSLDAREANF 54
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
DL+ ID +IANAFRRI+I+E+P++A E V NNTSVIQDEVLAHR+GL+P+ VDP +
Sbjct: 55 DLMKIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLT 114
Query: 151 YMSENDTSNEK----NTIVFKLHVLCERG--GPRLTVKTNELKWLPNGSELPLETKPDSN 204
++ N +EK NT+V L+V C R P+ + EL + L+ +P
Sbjct: 115 WVDSNLPDDEKFTDENTVVLSLNVKCTRNPDAPKGSTDPRELYNNAHVYARDLKFEPQGR 174
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAK 263
S+ F+N P+ P DI +A+L PGQEI L+AH + GIG HAK
Sbjct: 175 QSTT----------------FANCPVVPADPDILLAKLRPGQEILLKAHCILGIGGDHAK 218
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
+SPV+TA YR+LP+I +L+ ++ E A++ K P V I++ A V R T+
Sbjct: 219 FSPVSTASYRLLPQINILKPIKGEAAKRFQKCFPPGVIGIDE---NSDEAYVEDARKDTV 275
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
RE LR EE+ +V + RV++HFIF +ES GA++PE +F ++V+IL++K E
Sbjct: 276 SREVLRY-EEFADKVKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAE 326
>gi|341888283|gb|EGT44218.1| hypothetical protein CAEBREN_24695 [Caenorhabditis brenneri]
Length = 365
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 185/324 (57%), Gaps = 30/324 (9%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
L + +C+ +V+++ ++D M EFD+I I+A IANA RRIL+AE+PTMA+EK+ + N
Sbjct: 44 LNVTEYCDKIQVKMVNESEDKMTLEFDIIRIEAPIANALRRILLAEVPTMALEKIYLYQN 103
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKN-------------TIVFKLHV 170
TSVIQDEVL HRLGL+P+ VDPR F++ +E NEK ++FK++V
Sbjct: 104 TSVIQDEVLCHRLGLLPLRVDPRAFQFPTEKVVGINEKGVDCDEEPEGDPTRNLIFKINV 163
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C + + NG+ P + S+ S+ + + ++ + N P
Sbjct: 164 ACTKN-----------RNAANGTTDPKQLYHHSSVYSRAFEWIPIGNQKEGYTK-QNKPK 211
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L ++ E AE
Sbjct: 212 MVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAE 271
Query: 291 KLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFT 350
+L V IE G+ KK A V RA T R R E+ + V + + K HFIF+
Sbjct: 272 RLQSVFSEGVIGIEKKGN-KKIAVVKDARADTCSRNVFR-HEDLAQVVHLGKNKQHFIFS 329
Query: 351 IESTGALSPETLFTEAVKILEDKC 374
+ESTGAL L EA K++E KC
Sbjct: 330 VESTGALKASELVVEACKVMESKC 353
>gi|317026864|ref|XP_001399683.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
niger CBS 513.88]
gi|350634564|gb|EHA22926.1| hypothetical protein ASPNIDRAFT_206792 [Aspergillus niger ATCC
1015]
Length = 373
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 195/345 (56%), Gaps = 49/345 (14%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + L F N+ +++ R + + F LIG+DA+IANAFRRIL+AE+P++AIE V +
Sbjct: 38 GESHEWSLAKFKNDLKIDFHRNERFESSFSLIGVDASIANAFRRILMAEVPSIAIEYVFV 97
Query: 122 ANNTSVIQDEVLAHRLGLIPI------IVDPRLFEYMSENDTSN----EKNTIVFKLHVL 171
NNTSVIQDEVLA RLGLIP+ I R F+ +++D + + NTIV +L V
Sbjct: 98 HNNTSVIQDEVLAQRLGLIPLKGSVEGINWMRWFKKPTDDDPNGSSPADYNTIVLRLDVE 157
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFS 226
C + PN P ET P +++ +K T+ +
Sbjct: 158 CTKN--------------PNAD--PEETDPRKLYKNAHVYAKDITFHPVGRQEQFFA--G 199
Query: 227 NNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
++ I+P+ DI +A+L PGQ IE+E H +KGIG HAK+SPVATA YR+LP+I +L +
Sbjct: 200 DDAIQPVNPDILVAKLRPGQAIEMELHCIKGIGADHAKFSPVATATYRLLPDIKILRPII 259
Query: 286 DEDAEKLVKTCPVNVFDIEDI--------------GSGKKRATVAQPRACTLCRECLRCG 331
+DA+K K P V +E + G+ +A V P T+ RECLR
Sbjct: 260 GDDAKKFAKCFPSGVIGLEKVTREEAKQKDSGYEGHEGELKAVVVDPFKDTVSRECLR-H 318
Query: 332 EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
EE++ +V + RV+DHFIF IES G +TLF E+VK+L+ KC R
Sbjct: 319 EEFQGKVKLGRVRDHFIFNIESVGQFESDTLFLESVKVLKLKCAR 363
>gi|67523919|ref|XP_660019.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|40745370|gb|EAA64526.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|259487823|tpe|CBF86802.1| TPA: DNA-directed RNA polymerase I and III subunit Rpc40, putative
(AFU_orthologue; AFUA_2G13720) [Aspergillus nidulans
FGSC A4]
Length = 373
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 203/378 (53%), Gaps = 48/378 (12%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P H E +R R V N + + + + G + G + LD F + FRV+ + K
Sbjct: 5 VPSHEELERRRIVNVNAETVTNIASTDFPGHWP--GESHEWNLDKFRDGFRVDFHQNKKF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+DA+IANAFRRI++AE+PT+AIE V I NNTSVIQDEVLA RLGLIP+
Sbjct: 63 EASFSLIGLDASIANAFRRIVMAEVPTLAIEWVYIHNNTSVIQDEVLAQRLGLIPLQGSV 122
Query: 147 RLFEYMSENDTSNEK-----------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE- 194
+M + +E NT+V +L V C + PN S
Sbjct: 123 EGLNWMQWYNKGSEDEPGSGSDLADYNTVVLRLDVECTKN--------------PNASRD 168
Query: 195 --LPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEA 251
P + +++ +K + ++ E + + P DI +A+L PGQ+IELE
Sbjct: 169 ETDPRKLYKNAHVYAKDIVFHPVGRQEEFFTGEGAIRAVNP--DILVAKLRPGQKIELEM 226
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--- 308
H +KGIG HAK+SPVATA YR++P I +L + EDA+K K P V +E I +
Sbjct: 227 HCIKGIGADHAKFSPVATATYRLMPVIQILRPIIGEDAKKFAKCFPKGVIGLEPITAEDE 286
Query: 309 ----------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALS 358
G+ +A V T+ RECLR +E++ +V + R++DHFIF IESTG
Sbjct: 287 RQNAEYRGRGGELKAVVRDAFNDTVSRECLRH-DEFKGKVKLGRIRDHFIFNIESTGQFD 345
Query: 359 PETLFTEAVKILEDKCER 376
+ LF E+VK+L+ KC R
Sbjct: 346 SDVLFLESVKVLKLKCAR 363
>gi|194766065|ref|XP_001965145.1| GF21532 [Drosophila ananassae]
gi|190617755|gb|EDV33279.1| GF21532 [Drosophila ananassae]
Length = 333
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/333 (39%), Positives = 187/333 (56%), Gaps = 46/333 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D ++ F + ++ ++R +D +EFDLIG+ AIANAFRR++++++P+MAIEKV I N
Sbjct: 29 DEVFNMEVFKSKLQIAIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYN 88
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEY--MSENDTSNEKNTIVFKLHVLCER---GGPR 178
NTS+IQDEVLAHR+GL+P+ DPRLF Y +T E++T+ F+L V C R G
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTETGTEQDTLEFELKVKCTRRKDAGKD 148
Query: 179 LT----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+ V + LKWLP G + + T+ T D
Sbjct: 149 QSNFDDIYKNHKVYSGHLKWLPKGKQAQIYTE------------TGVGCIHD-------- 188
Query: 229 PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED 288
DI IA+L PG E++L AVKG+G+ HAK+SPVATA YR+LP+I L +V +D
Sbjct: 189 ------DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPQIKLNREVSGKD 242
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
A L V I++ + A V R + R R + V++ RV+DH+I
Sbjct: 243 AYLLQSCFSPGVIGIDE----NECAYVKDARYDSCSRNVYRY-PQINDSVTLARVRDHYI 297
Query: 349 FTIESTGALSPETLFTEAVKILEDKCERVITEL 381
FT+ES GAL PE +F EAVK+L+ KC I E+
Sbjct: 298 FTVESVGALKPEVIFLEAVKVLKKKCRSFIDEI 330
>gi|358365562|dbj|GAA82184.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus kawachii IFO 4308]
Length = 373
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 195/343 (56%), Gaps = 45/343 (13%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G + L+ F N+ +++ R + + F LIG+DA+IANAFRRIL+AE+P++AIE V +
Sbjct: 38 GESHEWSLEKFKNDLKIDFHRNERFEASFSLIGVDASIANAFRRILMAEVPSIAIEYVFV 97
Query: 122 ANNTSVIQDEVLAHRLGLIPI------IVDPRLFEYMSENDTSN----EKNTIVFKLHVL 171
NNTSVIQDEVLA RLGLIP+ I R F+ +++D + + NTIV +L V
Sbjct: 98 HNNTSVIQDEVLAQRLGLIPLKGSVEGINWMRWFKKPTDDDPNGSNPADYNTIVLRLDVE 157
Query: 172 CERGGPRLTVKTNELKWLPNGS---ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
C + PN + P + +++ +K T+ + ++
Sbjct: 158 CTKN--------------PNADPEEDDPRKLYKNAHVYAKDITFHPVGRQEQFFA--GDD 201
Query: 229 PIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
I+P+ DI +A+L PGQ IE+E H +KGIG HAK+SPVATA YR+LP+I +L + +
Sbjct: 202 AIQPVNPDILVAKLRPGQSIEMELHCIKGIGADHAKFSPVATATYRLLPDIKILRPIIGD 261
Query: 288 DAEKLVKTCPVNVFDIEDI--------------GSGKKRATVAQPRACTLCRECLRCGEE 333
DA+K K P V +E + G+ +A V P T+ RECLR EE
Sbjct: 262 DAKKFAKCFPSGVIGLEKVTREEAKQKDSGYEGHEGELKAVVVDPFKDTVSRECLR-HEE 320
Query: 334 WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
++ +V + RV+DHFIF IES G +TLF E+VK+L+ KC R
Sbjct: 321 FQGKVKLGRVRDHFIFNIESVGQFESDTLFLESVKVLKLKCAR 363
>gi|308508009|ref|XP_003116188.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
gi|308251132|gb|EFO95084.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
Length = 366
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 180/332 (54%), Gaps = 56/332 (16%)
Query: 72 FCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
+C+N V ++ ++D M EFD+ I+A IANA RR+LIAE+PTMA+EK+ + NTSVIQ
Sbjct: 50 YCDNIHVAMVNESEDKMTLEFDITHIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQ 109
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKN-------------TIVFKLHVLCERG 175
DEVL HRLGL+P+ VDPR F++ +E NEK ++FK++V C +
Sbjct: 110 DEVLCHRLGLLPLCVDPRGFQFPTEKVVGINEKGVDCDEEPAGDATRNLIFKINVSCTKN 169
Query: 176 GPRL-------------TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLL 222
L +V + W+P G + K + S+ PR T
Sbjct: 170 RNALPNSTDPKTLYHHSSVYSGSFAWVPIGDQ-----KSNYTDSTTPRMVTD-------- 216
Query: 223 PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE 282
DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L
Sbjct: 217 ------------DILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNA 264
Query: 283 DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRR 342
++ E AE+L V +IE GS K+ A V R T R R E+ K V + +
Sbjct: 265 EITGEAAERLKSVFSEGVIEIEKKGS-KRVAVVKDARKDTCSRNVFR-HEDLAKVVQLGK 322
Query: 343 VKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
K HFIF++ESTGAL L EA K++E KC
Sbjct: 323 NKQHFIFSVESTGALKSSELVVEACKVMETKC 354
>gi|444321150|ref|XP_004181231.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
gi|387514275|emb|CCH61712.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 197/362 (54%), Gaps = 62/362 (17%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P Y+ G +N+ ++ F F +++ L + D FD
Sbjct: 7 IEYNRVTNTTSTDFP----------GYSKDG-ENAWDVEKFKETFDIKISNLDERDATFD 55
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +IANAFRRI++AE+P +A E V NNTSVIQDEVLAHR+GL+P+ VDP + +
Sbjct: 56 LINIDTSIANAFRRIMMAEVPAVAAEHVYFLNNTSVIQDEVLAHRIGLVPLKVDPDMLTW 115
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERG--------GPRLT-----VKTNELKWLPNGSE 194
+ E + ++NTIV L+V C + P++ V +LK+ P G +
Sbjct: 116 VDQTLPEEERFTDENTIVLSLNVKCTKNDKAPKDCTDPKILYNNAHVYARDLKFEPQGKQ 175
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHA 253
+ET F+N P+ P DI +A+L PGQEI L AH
Sbjct: 176 --VET-------------------------FANCPVVPTDPDILLAKLRPGQEISLRAHC 208
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
+ GIG HAK+SPVATA YR+LP I + E + +DAEK K V I+D A
Sbjct: 209 ILGIGSDHAKFSPVATASYRLLPHINITEPIRGKDAEKFQKCFTPGVIGIKD-----GEA 263
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
V R T+ RE R +E+ +V + RV+DHF+F +ESTGA+ PE +F ++V+IL++K
Sbjct: 264 YVKDARMDTVSREVFR-HQEFADKVKLGRVRDHFVFNVESTGAMPPEEIFFKSVRILKNK 322
Query: 374 CE 375
+
Sbjct: 323 AQ 324
>gi|296422447|ref|XP_002840772.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636995|emb|CAZ84963.1| unnamed protein product [Tuber melanosporum]
Length = 377
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 184/328 (56%), Gaps = 36/328 (10%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D+S + HF FRV+ R T +FDLI DAAIAN RRI+IAE+PT+AIE V +
Sbjct: 32 GEDHSWNIKHFRRTFRVKFFRNTPLFSQFDLIHTDAAIANTLRRIMIAEVPTLAIESVYV 91
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFE----YMSENDTS----NEKNTIVFKLHVLCE 173
+NNTS+IQDEVLAHRLGLIP+ D + Y+ D++ +++T+V L CE
Sbjct: 92 SNNTSIIQDEVLAHRLGLIPLCGDKDALKGLSWYLRGEDSAPREPTDEDTVVLYLKKACE 151
Query: 174 RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS---KPRTYTS---FSSSQDLLPEFSN 227
R P K D++P Y S F + + F++
Sbjct: 152 RN--------------------PDAKKTDTDPDKLYINHNVYASDILFEPAGRQIKSFAH 191
Query: 228 NPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
+P+R DI IA+L PGQEI+L H +KGIG+ HAK+SPVATA YR+LP+I + + +
Sbjct: 192 DPVRAANPDILIAKLRPGQEIDLTMHCIKGIGQDHAKFSPVATASYRLLPDIKIKKPIRG 251
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
+ AE+ P V I + G+K A V R T+ RE LR +E++ V + RV+DH
Sbjct: 252 KAAERFAACFPKGVIAIRERKDGEKEAVVDNVRNDTVSREVLR-HDEFKGIVELGRVRDH 310
Query: 347 FIFTIESTGALSPETLFTEAVKILEDKC 374
FIF++ESTG + +F AV L+ K
Sbjct: 311 FIFSVESTGQFDADEIFLSAVGTLKAKT 338
>gi|119189173|ref|XP_001245193.1| hypothetical protein CIMG_04634 [Coccidioides immitis RS]
gi|392868091|gb|EAS33833.2| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
immitis RS]
Length = 382
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 202/368 (54%), Gaps = 39/368 (10%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R + N + H + G + G D+S ++ F NF+V + + F LIG
Sbjct: 13 KRKIIGINPETVTHISATDFPGHWP--GEDHSWSVNKFKENFQVTFHKNDPFEATFSLIG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS- 153
+DAA+ANAFRRILIAE+P++AIE V I NNTSV+ DEVL+HRLGL+P+ +MS
Sbjct: 71 VDAAVANAFRRILIAEIPSLAIEFVFIHNNTSVLHDEVLSHRLGLVPLKGSLEGINWMSW 130
Query: 154 -------ENDT---SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
E D+ +++ NTIV KL+V C + + + K N + +
Sbjct: 131 FRMPKEGEPDSGSPASDSNTIVLKLNVECTKNQNARPDEDDPTKLYNNAHVYAKDIVFE- 189
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
P + + FS ++ P P DI +A+L PGQ+I++E H +KGIG+ HAK
Sbjct: 190 -PVGRQAAF--FSGPHGVI-----QPAYP--DILLAKLRPGQKIDIEMHCIKGIGQDHAK 239
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------G 309
+SPVATA YR+LP+I + + DA K P V IE + GS G
Sbjct: 240 FSPVATASYRLLPDIQITRPILGNDAVKFANCFPKGVIGIEQVTAEDAAQAGSGYEGQEG 299
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+K+A V P T+ RECLR EE++ +V + RV+DHFIF IES G + + LF E+VK+
Sbjct: 300 QKKAVVVDPFKDTVSRECLRH-EEFKGKVKLGRVRDHFIFNIESVGQFNSDLLFLESVKV 358
Query: 370 LEDKCERV 377
L+ KC R+
Sbjct: 359 LKLKCARL 366
>gi|67611563|ref|XP_667165.1| DNA-directed RNA polymerase I [Cryptosporidium hominis TU502]
gi|54658273|gb|EAL36936.1| DNA-directed RNA polymerase I [Cryptosporidium hominis]
Length = 344
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 191/357 (53%), Gaps = 53/357 (14%)
Query: 39 VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHF--------CNNFRVEVIRLTKDDMEF 90
++C + P NV G S +++ ++ D++ ++V L D + F
Sbjct: 13 LECTTEGP---RNVGGYGYIGSNELNSIIKGDNYRKQTVEEIIETIDIKVNELKSDYINF 69
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D+ GIDA+IANA RRIL+ E+PT+AIE V I N VIQDEVLAHRLGLIP+++DP E
Sbjct: 70 DISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRLGLIPMLIDPNTIE 129
Query: 151 YMSENDTSNEKNTIVFKLHVLC-------ERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ +E++ NEKN++ FKL+V C E+G + + +L W+P
Sbjct: 130 FRNEDEDLNEKNSVCFKLNVKCTKDDINHEKGITSKAIYSKDLVWIP------------- 176
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHA 262
S + +F +P + + DI I +L PGQ IE + K IG+ HA
Sbjct: 177 -------------LSDNQRKKFGKSPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHA 223
Query: 263 KWSPVATAWYRMLPEIVLLED-VEDEDAEKLVKT-CPVNVFDIEDIGSGKKRATVAQPRA 320
KWSPV TA YR+LPE + DA KL T CP+ VFDIED+ A PR
Sbjct: 224 KWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTVCPMKVFDIEDVTGN---AVPTNPRN 280
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
CT CR C+ E++ ++ + + K HFIF+IE+TG + P L A+ IL K E++
Sbjct: 281 CTTCRACI---EKFPNKIKLLKDKFHFIFSIETTGCIPPVELVKTAIDILRKKGEKI 334
>gi|66356630|ref|XP_625493.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|46226487|gb|EAK87481.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|323509937|dbj|BAJ77861.1| cgd8_300 [Cryptosporidium parvum]
Length = 344
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 190/357 (53%), Gaps = 53/357 (14%)
Query: 39 VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHF--------CNNFRVEVIRLTKDDMEF 90
++C + P NV G S +++ ++ D++ ++V L D + F
Sbjct: 13 LECTTEGP---RNVGGYGYIGSNELNSIIKGDNYRKQTVEEIIETIDIKVNELKSDYINF 69
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D+ GIDA+IANA RRIL+ E+PT+AIE V I N VIQDEVLAHRLGLIP+++DP E
Sbjct: 70 DISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRLGLIPMLIDPNTIE 129
Query: 151 YMSENDTSNEKNTIVFKLHVLC-------ERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ +E++ NEKN++ FKL+V C E+G + + +L W+P
Sbjct: 130 FRNEDEDLNEKNSVCFKLNVKCTKDDINHEKGITSKAIYSKDLVWIP------------- 176
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHA 262
S + +F P + + D I I +L PGQ IE + K IG+ HA
Sbjct: 177 -------------LSDNQRKKFGKTPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHA 223
Query: 263 KWSPVATAWYRMLPEIVLLED-VEDEDAEKLVKT-CPVNVFDIEDIGSGKKRATVAQPRA 320
KWSPV TA YR+LPE + DA KL T CP+ VFDIED+ A PR
Sbjct: 224 KWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTVCPMKVFDIEDVTGN---AVPTNPRN 280
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
CT CR C+ E++ ++ + + K HFIF+IE+TG + P L A+ IL K E++
Sbjct: 281 CTTCRACI---EKFPNKIKLLKDKFHFIFSIETTGCIPPVELVKTAIDILRKKGEKI 334
>gi|296811216|ref|XP_002845946.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
gi|238843334|gb|EEQ32996.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
Length = 380
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 192/341 (56%), Gaps = 38/341 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G +++ +D F ++E + + F LIG+DAAIANAFRRILIAE+PT+AIE V I
Sbjct: 38 GENHAWSIDKFSEGLKIEFHKNDPLEASFSLIGVDAAIANAFRRILIAEIPTLAIEYVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPI------IVDPRLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLAHRLGLIP+ I R F+ E D T + NTIV +L
Sbjct: 98 QNNTSVIQDEVLAHRLGLIPLKGSLEGINWLRWFKVPKEGDPDSGSTHEDSNTIVLRLVK 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
C+ P + L N + + + + + + Q S NP
Sbjct: 158 ECKL-NPNAHPSEEDPTVLYNNAHIYAKDLIFEPQGRQEKYFHGDGVIQ------SANP- 209
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI +A+L PGQ+I++E H +KGIG HAK+SPVATA YR+LP+I +L + +DA
Sbjct: 210 ----DILLAKLRPGQKIDIEMHCIKGIGADHAKYSPVATASYRLLPDIQILRPILGKDAI 265
Query: 291 KLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWEK 336
K P V IE + GS G+K+A V P T+ RECLR +E++
Sbjct: 266 KFAGCFPRGVIGIEHVTAAESAQPGSGYEGKEGEKKAVVVDPFKDTVSRECLRH-DEFKG 324
Query: 337 RVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+V + RV+DHFIF IESTG + + +F E++K+L+ KC+R+
Sbjct: 325 KVKLGRVRDHFIFNIESTGQFNSDLMFLESIKVLKLKCQRL 365
>gi|385302721|gb|EIF46838.1| dna-directed rna polymerases i and iii 40 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 340
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 188/324 (58%), Gaps = 25/324 (7%)
Query: 57 AYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAI 116
AY S + + L+ F F++ + +T+ FDLIG+D +IANAFRRI+I+E+P++AI
Sbjct: 26 AY-SKDIGEAWDLEAFKKKFQLNISYITERTANFDLIGLDTSIANAFRRIMISEVPSVAI 84
Query: 117 EKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLC 172
E V + NNTSVIQDEVLAHRLGL+P+ VDP L ++ N EK NTIV L+V C
Sbjct: 85 EFVYMFNNTSVIQDEVLAHRLGLVPLKVDPDLLSWVDPNAEEKEKFTDENTIVLSLNVSC 144
Query: 173 ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP 232
R N +K G P +SN +K F + F ++P+ P
Sbjct: 145 TRN-------PNAVK----GDNRPENLYKNSNVYAKD---LKFEPQGRQVETFKDHPVVP 190
Query: 233 M-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
+I +A+L PGQEI L AH V GI HAK+SPVAT YR+LP I + E + +DA +
Sbjct: 191 CDPNILLAKLRPGQEISLRAHCVLGIXADHAKFSPVATXSYRLLPLIDIKEPITGKDALE 250
Query: 292 LVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTI 351
P V I D G A V R T+ RE LR E++ +V + R++DHFIF +
Sbjct: 251 FQDCFPSGVIGINDKG----EAYVKDARKDTVSREVLR-HEKFNGKVKLGRIRDHFIFNV 305
Query: 352 ESTGALSPETLFTEAVKILEDKCE 375
ESTGA+ PE +F ++V++L++K +
Sbjct: 306 ESTGAMLPEEIFFKSVRVLKNKAD 329
>gi|240279628|gb|EER43133.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H143]
gi|325092757|gb|EGC46067.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H88]
Length = 380
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 39/373 (10%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR + N + + + + G + G ++ +D F N ++ + + F L+G
Sbjct: 13 QRKVIGINAETVTNISSTDFPGHWP--GENHEWSIDEFKRNLKIIYHKNEPYEASFSLVG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP------RL 148
+DAAIANAFRRI+IAE+P++AIE V I NNTSVIQDEVLAHRLGL+P+ R
Sbjct: 71 VDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRW 130
Query: 149 FEYMSEN--DTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
F +E D+ +E NT+V L+V C P+ + ++ + N + +
Sbjct: 131 FRQPTEGRPDSGSELADYNTVVLHLNVECT-NNPKASANEDDPQKRYNHAHV-YAKDITF 188
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+P + TY F ++ S NP DI +A+L PGQ+I++E H VKGIG HAK
Sbjct: 189 HPVGRQETY--FQEPDGVIR--SANP-----DILLAKLRPGQKIDIEMHCVKGIGADHAK 239
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------------G 309
+SPVATA YR+LP+I ++ + DA K + P V I+ + + G
Sbjct: 240 FSPVATASYRLLPDIKIIRPILGNDALKFARCFPKGVIGIDSVSAEEASRPGSGYEGHEG 299
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+K+ V P T+ RECLR +E++ +V + R++DHFIF +ESTG + LF E+VK+
Sbjct: 300 EKKVVVVDPFKDTMSRECLRH-DEFQGKVKLGRIRDHFIFNVESTGQFRSDVLFIESVKV 358
Query: 370 LEDKCERVITELS 382
L+ KC R+ +L+
Sbjct: 359 LKLKCRRLKRDLA 371
>gi|115384348|ref|XP_001208721.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
gi|114196413|gb|EAU38113.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
Length = 374
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 144/379 (37%), Positives = 210/379 (55%), Gaps = 49/379 (12%)
Query: 28 LPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD 86
+P E R R V N + + + + G + G + LD F N+F+VE R
Sbjct: 5 IPTQAELDRRRLVSINPETVSNIPSTDFPGHWP--GESHEWSLDKFRNDFKVEFHRNAPF 62
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---- 142
+ F L+G+DAAIANAFRRIL+AE+PT+AIE V + NNTSVIQDEVLA RLGLIP+
Sbjct: 63 EASFSLVGLDAAIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSV 122
Query: 143 --IVDPRLFEYMSEND-----TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS-- 193
I R F+ +++D T ++ NTIV +L V C + PN +
Sbjct: 123 EGINWMRWFKKPTDDDPESGSTPSDYNTIVLRLDVECTKN--------------PNAAKD 168
Query: 194 -ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEA 251
+ P + +++ +K T+ + ++ I+P+ DI IA+L PGQ+I +E
Sbjct: 169 EDDPRKLYRNAHVYAKDITFHPVGRQEQFFT--GDDAIQPVNPDILIAKLRPGQKISMEL 226
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI----- 306
H +KGIG HAK+SPV TA YR+LP+I + + +DA+K K P V +E +
Sbjct: 227 HCIKGIGADHAKFSPVCTASYRLLPDIKIERPIIGDDAKKFAKCFPRGVIGLEPVTREEA 286
Query: 307 ---GSGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
GSG + +A V T+ RECLR EE++ +V + RV+DHFIF +ES+G
Sbjct: 287 AKKGSGYEGHEGEMKAVVRDAFNDTVSRECLR-HEEFQGKVKLGRVRDHFIFNVESSGQF 345
Query: 358 SPETLFTEAVKILEDKCER 376
+ + LF E+VK+L+ KC R
Sbjct: 346 NSDVLFLESVKVLKLKCAR 364
>gi|396471375|ref|XP_003838857.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
gi|312215426|emb|CBX95378.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
Length = 374
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 141/377 (37%), Positives = 196/377 (51%), Gaps = 56/377 (14%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR +Q + + ++ + G + G DN L+HF NF+V+ D F L+
Sbjct: 11 QRKLLQVGTETVANQQSTDFPGHWP--GEDNEWDLEHFKENFKVQFHSHKPYDTSFSLVS 68
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS- 153
ID ++ANA RRILIAE+P++AIE V I NTS+IQDEVLAHRLGLIP+ +M
Sbjct: 69 IDTSVANAIRRILIAEIPSLAIEDVFIYQNTSIIQDEVLAHRLGLIPLCGSCDGLRWMKW 128
Query: 154 ---------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL--ETKPD 202
+ T ++ NTIV +L+ CE W G + + ET PD
Sbjct: 129 FHKATGLEDGSGTQSDYNTIVLRLNKKCE--------------WQDGGLQRAVAGETDPD 174
Query: 203 S-----NPSSKPRTYTSFSSSQDLLPEF----SNNPIRPMLDITIARLGPGQEIELEAHA 253
N ++ + + P S NP DI IA++ PGQEI L HA
Sbjct: 175 KLYINHNVYARDMIWEPIGRQAQMFPPGAEIRSTNP-----DILIAKMRPGQEIALSMHA 229
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG------ 307
KGIG+ HAK+SPVATA YR+LP I + E + DA+K + P V ++ +
Sbjct: 230 HKGIGQDHAKFSPVATASYRLLPTIDITEPITGPDAKKFARCFPRGVIRLDTVTAAHIAQ 289
Query: 308 ----SGKKR---ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
+GK+ A V P T+ RECLR E++ +V + RV+DHFIF IESTG +
Sbjct: 290 DPRLAGKQDESLAVVEDPMNDTVSRECLR-HPEFKDKVKLGRVRDHFIFRIESTGQWESD 348
Query: 361 TLFTEAVKILEDKCERV 377
LF E+VK+L KC+R+
Sbjct: 349 ELFLESVKLLRVKCQRI 365
>gi|452001561|gb|EMD94020.1| hypothetical protein COCHEDRAFT_1222623 [Cochliobolus
heterostrophus C5]
Length = 376
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 200/375 (53%), Gaps = 48/375 (12%)
Query: 34 FQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLI 93
+R +Q + ++ ++ + G + G ++ LD+F NF V + D +F L
Sbjct: 10 MRRKTLQVGPETVMNQQSTDFPGHWP--GENHEWDLDYFKENFNVTFHSHSPFDTQFSLT 67
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP---RLFE 150
GID ++ANAFRRIL++E+PT+AIE V I NTS+IQDEVLAHRLGL+P+ D R +
Sbjct: 68 GIDTSVANAFRRILLSEIPTLAIEDVFIYQNTSIIQDEVLAHRLGLVPLCGDREGLRAMK 127
Query: 151 YMS-------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL--ETKP 201
+ S E+ T + NT+V +L V C KW G + + ET P
Sbjct: 128 WYSKPTEEDPESGTPTDWNTVVLRLEVEC--------------KWQEGGLQRAVAGETDP 173
Query: 202 DS-----NPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVK 255
D N +K + +L IR DI IA++ PGQ I L HA+K
Sbjct: 174 DKLYVGHNVYAKDIEFKPIGRQAELFSSEQGKEIRSTNPDILIAKMRPGQSINLSMHAIK 233
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------- 306
GIG+ HAK+SPVATA YR++P I + + + DA+K + P V ++ +
Sbjct: 234 GIGQDHAKFSPVATASYRLMPTIDITKPIVGPDAKKFARCFPRGVIRLDTVTETDVKQHP 293
Query: 307 ----GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETL 362
G+ +A VA T+ RECLR E++ +V + R++DHFIF +ESTG + L
Sbjct: 294 ELEGKEGEAKAVVANAMNDTVSRECLRH-PEFKDKVRLGRIRDHFIFRVESTGQWESDEL 352
Query: 363 FTEAVKILEDKCERV 377
F E+VK+L+ KC+R+
Sbjct: 353 FLESVKLLKIKCQRI 367
>gi|453085895|gb|EMF13938.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Mycosphaerella populorum SO2202]
Length = 393
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/375 (37%), Positives = 201/375 (53%), Gaps = 44/375 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
QR V N + + + G Y D++ LD F N R++ + D F L+G
Sbjct: 14 QRRIVNINAETVSNVASTDLPGHYGPKQ-DDTWNLDRFRQNLRIQFHQNKPLDAAFSLVG 72
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS- 153
+DA++ANA RRI +AELPT+AIE V + +NTS+IQDEVLAHR+GLIP+ +M
Sbjct: 73 VDASVANALRRIALAELPTLAIENVYMYDNTSIIQDEVLAHRMGLIPLKGGKEGLRWMQW 132
Query: 154 ------END---------------------TSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
E+D T ++ NT+V L V C TV+ + +
Sbjct: 133 FKKTPPESDHAAYAQFMAEQEEEGADRSASTPSDLNTVVLNLKVECRWK----TVEEDGV 188
Query: 187 ---KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF--SNNPIRPML-DITIAR 240
K GS P E +SN + T+ Q PEF N IRP+ DI IA+
Sbjct: 189 DGKKLAREGSTDPTEKYVNSNVYAHQITFEPQGQRQ---PEFFSGENAIRPVNPDILIAK 245
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
L PGQ I + H VKGIG HAK+SPVATA YR+LP+I + + + DA+ K P V
Sbjct: 246 LRPGQRIHMTMHCVKGIGADHAKFSPVATASYRLLPDIKITQPIVGADAKAFQKCFPKGV 305
Query: 301 FDI-EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSP 359
+ ED SG+KRA V P T+ RECLR +E++ +V + R++DHFIF++ES+G
Sbjct: 306 IGLEEDPESGEKRAVVKDPFKDTVSRECLRY-DEFKDKVKLGRIRDHFIFSMESSGQFDS 364
Query: 360 ETLFTEAVKILEDKC 374
+ LF +++++L+ K
Sbjct: 365 DELFIDSIRVLKQKA 379
>gi|255724476|ref|XP_002547167.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135058|gb|EER34612.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 337
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 192/351 (54%), Gaps = 38/351 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H +N G YA ++ F N F +++ + + FD
Sbjct: 9 IEYNRVTNTTSTDFPGHQQN----GDYA-------WDIEKFKNKFEIKITNMGERTGTFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID +I+NAFRRI+IAE+P++A+E V + NTSVIQDEVLA R+GLIP + P +
Sbjct: 58 LIHIDTSISNAFRRIMIAEVPSVAVETVYMFMNTSVIQDEVLAQRIGLIPWNISPDKLSW 117
Query: 152 MSE----NDTSNEKNTIVFKLHVLCER--GGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
+ E ND E NTIV L V C + P+ N L N L+ +P
Sbjct: 118 VDESVDVNDRFTEDNTIVLSLDVTCTKNPNAPKDATDPNVLYKNSNVYAKDLKFEPHGTQ 177
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
+ K F + P+ P +I IA+L PGQEI L AH + GIG HAK+
Sbjct: 178 AEK----------------FRDTPVVPCDPNILIAKLRPGQEISLRAHCILGIGSDHAKF 221
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPVATA YR+LP I + E + + AEK K P V I+ S A VA R T+
Sbjct: 222 SPVATASYRLLPVIDIKEPITGKLAEKFQKCFPPGVIGID---SKTGEAYVADARKDTVS 278
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
RE LR E++ +V + R +DHFIF +ESTGA++P+ +F ++V+IL++K E
Sbjct: 279 REVLR-HPEFDGKVKLGRQRDHFIFNVESTGAMTPDEIFCKSVRILKNKAE 328
>gi|393219179|gb|EJD04666.1| hypothetical protein FOMMEDRAFT_80006 [Fomitiporia mediterranea
MF3/22]
Length = 387
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 185/345 (53%), Gaps = 50/345 (14%)
Query: 47 IHTENVM------YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIA 100
+H E V + G Y G DNS L F + ++ V RL++ ++ DLIG+DA+IA
Sbjct: 21 VHAERVTNVSSNDFHGHYP--GEDNSWDLSAFKRSLQLNVTRLSQRSVDLDLIGVDASIA 78
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE 160
NA RR LIAE+PT+AIE V + NNTSVI DEVLAHRLGL+P+ +DP LFE E + +
Sbjct: 79 NAIRRTLIAEVPTIAIESVYVWNNTSVIHDEVLAHRLGLVPLNLDPGLFEMREEGKDATD 138
Query: 161 KNTIVFKLHVLCER--GGPRLT-----------VKTNELKWLPNGSELPLETKPDSNPSS 207
++T+VFKL V C+R G P + V L+W P G + + P
Sbjct: 139 RSTLVFKLEVECKRKAGAPAESANPDDLYENHLVTAGMLRWEPQGEQADV-------PQL 191
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
KP T NP +I +A+L PGQ I++E HA+K +GK HAKWSPV
Sbjct: 192 KPPGPT--------------NP-----NIVLAKLRPGQVIDMECHAIKNVGKEHAKWSPV 232
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC--TLCR 325
ATA YR+ P I +L+ A K V + G+ + V + R ++ R
Sbjct: 233 ATASYRIHPHITILKQPPSGSARKFADCFSPGVIKVIGEGTASEAVEVDEKRVREESMSR 292
Query: 326 ECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
E R E+E V + RV+D F+F IES G +P LF A+++L
Sbjct: 293 EVFRHS-EFEGCVKLGRVRDWFLFNIESEGPYAPRDLFPAAIRVL 336
>gi|451849744|gb|EMD63047.1| hypothetical protein COCSADRAFT_92552 [Cochliobolus sativus ND90Pr]
Length = 376
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 200/375 (53%), Gaps = 48/375 (12%)
Query: 34 FQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLI 93
+R +Q + ++ ++ + G + G D+ L++F NF V + D +F L
Sbjct: 10 MRRKTLQVGPETVMNQQSTDFPGHWP--GEDHVWDLEYFKENFNVTFHSHSPFDTQFSLT 67
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP---RLFE 150
GID ++ANAFRRIL++E+PT+AIE V I NTS+IQDEVLAHRLGL+P+ D R +
Sbjct: 68 GIDTSVANAFRRILLSEIPTLAIEDVFIYQNTSIIQDEVLAHRLGLVPLCGDREGLRAMK 127
Query: 151 YMS-------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL--ETKP 201
+ S E+ T + NT+V +L V C KW G + + ET P
Sbjct: 128 WYSKPTEEDPESGTPTDWNTVVLRLEVEC--------------KWQEGGLQRAVAGETDP 173
Query: 202 DS-----NPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVK 255
D N +K + +L IR DI IA++ PGQ I L HA+K
Sbjct: 174 DKLYVGHNVYAKDIEFKPIGRQAELFSSEQGKEIRSTNPDILIAKMRPGQSINLSMHAIK 233
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------- 306
GIG+ HAK+SPVATA YR++P I + + + DA+K + P V ++ +
Sbjct: 234 GIGQDHAKFSPVATASYRLMPTIDITKPIVGPDAKKFARCFPRGVIRLDTVTETDVKQHP 293
Query: 307 ----GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETL 362
G+ +A VA T+ RECLR E++ +V + R++DHFIF +ESTG + L
Sbjct: 294 ELEGKEGEAKAVVANAMNDTVSRECLRH-PEFKDKVRLGRIRDHFIFRVESTGQWESDEL 352
Query: 363 FTEAVKILEDKCERV 377
F E+VK+L+ KC+R+
Sbjct: 353 FLESVKLLKIKCQRI 367
>gi|344232398|gb|EGV64277.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
gi|344232399|gb|EGV64278.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
Length = 336
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 193/349 (55%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H+ N D S ++ N+ V++ +L + + FD
Sbjct: 9 IEYNRVTNTTSTDFPGHSSNE-----------DQSWDIEKIKNSLEVKISKLDERESNFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+ ID +IANA RRI+I+E+P++A E + + NNTSVIQDEVLAHR+GLIP+ DP L +
Sbjct: 58 LVHIDTSIANALRRIMISEVPSVAAETIYVFNNTSVIQDEVLAHRIGLIPLKADPDLLTW 117
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E ++NTIV L V C T N P GS P E +S+ +
Sbjct: 118 VDTAQDEKSKYTDENTIVLTLDVTC-------THNPNA----PKGSTNPKELYRNSHVYA 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + +L F NP+ +I IA+L PGQEI L AH + G+G HAK+SP
Sbjct: 167 KDLKFEPQGKQVEL---FKGNPVTAADPNILIAKLRPGQEISLRAHCILGVGSDHAKFSP 223
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR++P I + + + E A++ + P V DI+ G A V R T+ RE
Sbjct: 224 VATASYRLMPVIDIKQPISGEQAKRFQRCFPPGVVDIDSKG----EAYVKDARRDTVSRE 279
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR EE++ +V + R +DHFIF IESTG + PE +F +++++L+ K +
Sbjct: 280 VLR-HEEFDGKVKLGRKRDHFIFNIESTGGMPPEEIFIKSIRLLKSKAD 327
>gi|365762578|gb|EHN04112.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 323
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 181/313 (57%), Gaps = 27/313 (8%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 --GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
P+ + EL + L+ +P S+ F++ P+ P
Sbjct: 144 PDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT----------------FADCPVVPA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A +
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
K P V I++ G A V R T+ RE LR EE+ +V + RV++HFIF +E
Sbjct: 248 QKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFIFNVE 303
Query: 353 STGALSPETLFTE 365
S GA++PE +F +
Sbjct: 304 SAGAMTPEEIFFQ 316
>gi|323302589|gb|EGA56396.1| Rpc40p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 181/313 (57%), Gaps = 27/313 (8%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S +N ++ F +F V + L + FDLI ID +IANAFRRI+I+E+P++A E V
Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDARETNFDLINIDTSIANAFRRIMISEVPSVAAEYV 83
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERG 175
NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK NTIV L+V C R
Sbjct: 84 YFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRN 143
Query: 176 --GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
P+ + EL + L+ +P S+ F++ P+ P
Sbjct: 144 PDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT----------------FADCPVVPA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I +L+ ++ E A +
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
K P V I++ G A V R T+ RE LR EE+ +V + RV++HFIF +E
Sbjct: 248 QKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFIFNVE 303
Query: 353 STGALSPETLFTE 365
S GA++PE +F +
Sbjct: 304 SXGAMTPEEIFFQ 316
>gi|303323289|ref|XP_003071636.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111338|gb|EER29491.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320035278|gb|EFW17220.1| RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 382
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 198/368 (53%), Gaps = 39/368 (10%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R + N + H + G + G D+S ++ F NF+V + + F LIG
Sbjct: 13 KRKIIGINPETVTHISATDFPGHWP--GEDHSWSVNKFKENFQVTFHKNDSFEATFSLIG 70
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS- 153
+DAA+ANAFRRILIAE+P++AIE V I NNTSV+ DEVL+HRLGL+P+ +MS
Sbjct: 71 VDAAVANAFRRILIAEIPSLAIEFVFIHNNTSVLHDEVLSHRLGLVPLKGSLEGINWMSW 130
Query: 154 -------ENDT---SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
E D+ +++ NTIV KL+V C + + + K N D
Sbjct: 131 FRMPKEGEPDSGSPASDSNTIVLKLNVECTKNQNARPDEDDPTKLYNNAHVY----AKDI 186
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
R FS ++ P P DI +A+L PGQ+I++E H +KGIG+ HAK
Sbjct: 187 VFEPVGRQAAIFSGPHGVI-----QPAYP--DILLAKLRPGQKIDIEMHCIKGIGQDHAK 239
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------G 309
+SPVATA YR+LP+I + + DA P V IE + GS G
Sbjct: 240 FSPVATASYRLLPDIQITRPILGNDAVNFANCFPKGVIGIEQVTAEDAAQAGSGYEGQEG 299
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+K+A V P T+ RECLR EE++ +V + RV+DHFIF IES G + + LF E+VK+
Sbjct: 300 EKKAVVVDPFKDTVSRECLRH-EEFKGKVKLGRVRDHFIFNIESVGQFNSDLLFLESVKV 358
Query: 370 LEDKCERV 377
L+ KC R+
Sbjct: 359 LKLKCARL 366
>gi|427798089|gb|JAA64496.1| Putative rna polymerase i and iii subunit, partial [Rhipicephalus
pulchellus]
Length = 445
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 161/264 (60%), Gaps = 19/264 (7%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
H+E RT V +HTE V + GA +GVD S F FRV +I + +EF
Sbjct: 3 HLERMRTHVHLREHDLLHTETVDHCGAI--LGVDYSWDFQKFVKKFRVGIISMDDTTIEF 60
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
DL+G+D +IANA RRIL+AE+PTMA +KV + NNT +IQDEVLAHR+GL+P +DPR+FE
Sbjct: 61 DLVGLDPSIANAIRRILLAEVPTMAPDKVYLYNNTGIIQDEVLAHRIGLVPFNIDPRMFE 120
Query: 151 YM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
Y SE+D S E +T+ F+L V C + P + P E D +K
Sbjct: 121 YRESESDGSPE-DTVEFELKVKCTKN-----------PQAPKDATTPDELYKDHMVYTKH 168
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
T+ S ++ F N P RP+ DI +A+L PGQEI+L+ H VKG G+ HAK+SPVA
Sbjct: 169 LTWNPLGSQAEI---FGNKPPRPVHDDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSPVA 225
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKL 292
TA YR+LPEI LL V DE AE+L
Sbjct: 226 TASYRLLPEIRLLRPVRDEQAERL 249
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 112/190 (58%), Gaps = 5/190 (2%)
Query: 179 LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-IT 237
L VK + P + P E D +K T+ S ++ F N P RP+ D I
Sbjct: 260 LKVKCTKNPQAPKDATTPDELYKDHMVYTKHLTWNPLGSQAEI---FGNKPPRPVHDDII 316
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP 297
+A+L PGQEI+L+ H VKG G+ HAK+SPVATA YR+LPEI LL V DE AE+L
Sbjct: 317 LAKLRPGQEIDLKLHCVKGTGQVHAKFSPVATASYRLLPEIRLLRPVRDEQAERLQGCFS 376
Query: 298 VNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
V +++D G K A VA RA T R R ++ + V + RVKDH+IF++ESTGA
Sbjct: 377 KGVIELDDEPDGHKVARVANARADTCSRNVFRF-DDLKDAVELSRVKDHYIFSVESTGAY 435
Query: 358 SPETLFTEAV 367
+P+TL TEA+
Sbjct: 436 APDTLVTEAI 445
>gi|167387776|ref|XP_001738304.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Entamoeba
dispar SAW760]
gi|165898594|gb|EDR25427.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Entamoeba dispar SAW760]
Length = 291
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 188/313 (60%), Gaps = 44/313 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+ I + + +EFD +GID ++AN RRI+IAE+PTMAIE V++ +N+S I DE+L HR
Sbjct: 6 RIIKISESPEKVEFDAMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHR 65
Query: 137 LGLIPIIVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVK----TNELKWLP 190
LGLIPI+ DPR F++ + ++ E++TIVF L V C + V +++L W P
Sbjct: 66 LGLIPILADPRKFKFPKDRHFTDPTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLIWEP 125
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIEL 249
G + ET F++ PI+P+ DI IA L P Q I+
Sbjct: 126 QGEQ---ETT------------------------FADCPIKPVFDDILIAELQPHQHIKC 158
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKT-CPVNVFDIEDIGS 308
+ KGIG+ HAK+SPV A YR++P+I +++ +++ K +K CP+NVFDIED
Sbjct: 159 KLFCCKGIGQDHAKFSPVCPATYRLMPKITVIK--QNKKMSKEIKNCCPLNVFDIED--- 213
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
V PR C +CREC+R EE + + + R ++H++F++ESTG + +F+EAVK
Sbjct: 214 --GELIVKNPRNCKMCRECIR--EERSEYIKLGREENHYLFSVESTGIYPAKEIFSEAVK 269
Query: 369 ILEDKCERVITEL 381
I++ K E+++TEL
Sbjct: 270 IMKSKAEKLVTEL 282
>gi|260950905|ref|XP_002619749.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847321|gb|EEQ36785.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 333
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/362 (37%), Positives = 194/362 (53%), Gaps = 62/362 (17%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H+ D++ ++ F F +++ + + FD
Sbjct: 7 IEYNRVTNTSSTDFPGHSAE------------DHAWDIEKFKRTFDIDIKYIAGRNANFD 54
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L ID +IANAFRRI+IAE+P++A E V + NNTSVIQDEVLAHR+GLIP+ VDP +
Sbjct: 55 LRHIDTSIANAFRRIMIAEVPSVAAETVYVFNNTSVIQDEVLAHRIGLIPLNVDPDALVW 114
Query: 152 M----SENDTSNEKNTIVFKLHVLCERG--------GPRL-----TVKTNELKWLPNGSE 194
+ E + N+ NTIV L V C R P+L +V +LK+ P G +
Sbjct: 115 IDPAADEAERFNDTNTIVMSLDVSCTRNPHAPAGTTDPKLLYRNSSVYARDLKFEPQGRQ 174
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHA 253
L F ++P+ P DI +A+L PGQEI L H
Sbjct: 175 AEL---------------------------FKDSPVVPCDPDILLAKLRPGQEISLRVHC 207
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
V G+G HAK+SPVATA YR++P I +LE + E A + K P V I++ K A
Sbjct: 208 VLGVGSDHAKFSPVATASYRLMPVIDILEPISGEQAVRFQKCFPSGVIGIDE----KGEA 263
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
VA R T+ RE LR EE+ +V + R ++HFIF +ESTGA+SP +F ++V++L++K
Sbjct: 264 YVADARKDTVSREVLR-HEEFSGKVKLGRDREHFIFNVESTGAMSPAEIFLKSVRVLKNK 322
Query: 374 CE 375
+
Sbjct: 323 VD 324
>gi|45187904|ref|NP_984127.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|44982688|gb|AAS51951.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|374107343|gb|AEY96251.1| FADR031Cp [Ashbya gossypii FDAG1]
Length = 364
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 182/312 (58%), Gaps = 24/312 (7%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+D F V++ L + + FDL+ +D +IANAFRRI+I+E+P++A E V NNTSVI
Sbjct: 63 VDEFRRTMDVQIKSLDEREANFDLLRVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVI 122
Query: 129 QDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTN 184
QDEVLAHR+GL+P+ VDP + + + E + ++NT+V L+V C
Sbjct: 123 QDEVLAHRIGLVPLKVDPDMLTWVDKSLPEAERFTDENTVVLSLNVKCTHNPD------- 175
Query: 185 ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGP 243
P GS P E +++ ++ F L F+ P+ P DI +A+L P
Sbjct: 176 ----APKGSTDPKELYRNAHIYARD---LKFEPQGKQLETFAKCPVVPADPDILLAKLRP 228
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI 303
GQEI L H + GIG HAK+SPVATA YR++P I ++E + DAEK VK P V I
Sbjct: 229 GQEISLRVHCILGIGSDHAKFSPVATASYRLMPYINIVEPITGPDAEKFVKCFPPGVAAI 288
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
+ G A V R T+ RE LR E E++V + RV+DHFIF +ES GA++PE +F
Sbjct: 289 NEKGE----AFVQDARKDTVSREVLR-HPELEQKVKLGRVRDHFIFNVESAGAMTPEEIF 343
Query: 364 TEAVKILEDKCE 375
++V+IL++K E
Sbjct: 344 FKSVRILKNKAE 355
>gi|409045867|gb|EKM55347.1| hypothetical protein PHACADRAFT_161317 [Phanerochaete carnosa
HHB-10118-sp]
Length = 364
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 195/351 (55%), Gaps = 58/351 (16%)
Query: 47 IHTENVM------YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIA 100
+H E V Y G Y + D+S ++ F EV RL++ +EFDL+G+DA+IA
Sbjct: 19 VHAERVSDVSCTEYPGHYPNE--DHSWDMEKFK-----EVQRLSQWSIEFDLVGVDASIA 71
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND---T 157
NAFRRI+IAE+PT+AIE V + NNTSVI DEVLAHR+GL+ DP E + T
Sbjct: 72 NAFRRIMIAEVPTIAIEHVYVWNNTSVIHDEVLAHRIGLVQPSADPSTLEIRTPTGFGAT 131
Query: 158 SNEKNTIVFKLHVLCERGGPRLT--------VKTNELKWLPNGSELPLETKPDSNPSSKP 209
+++NT+VF+L V CER P+ + VK+ +L W+P G + +
Sbjct: 132 PSDRNTLVFRLQVTCER-APKGSGKEYINDEVKSGDLVWVPQGEQEEV------------ 178
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
F+NNP P DI +A+L PGQEI++E HA+KG+GK HAKWSPVA
Sbjct: 179 ---------------FANNPPGPTNKDIVLAKLRPGQEIDMELHAIKGVGKEHAKWSPVA 223
Query: 269 TAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
TA YR+ P I+L + V A+K V ++ G+ + R ++ RE
Sbjct: 224 TASYRLHPLILLNPQKPVPTHLAKKFAGCFSPGVVQVD--ADGEIWIDLHGMRKDSVSRE 281
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
LR EE+ V ++RV+D FIF +ES G +PE L EAVK++ +K +
Sbjct: 282 VLRH-EEFHGCVELKRVRDWFIFNVESEGPYAPERLLPEAVKVMREKVASI 331
>gi|189203213|ref|XP_001937942.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985041|gb|EDU50529.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 376
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 190/343 (55%), Gaps = 38/343 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G ++ LD+F +NF V + D +F L GID ++ANAFRRIL++E+PT+AIE V I
Sbjct: 36 GENHEWNLDYFRDNFNVVFHKNDPLDAQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYI 95
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPR--- 178
NTS+IQDEVLAHRLGLIP+ D M +++ GGP
Sbjct: 96 YQNTSIIQDEVLAHRLGLIPLCGDRATLRRMKWYAKPTDEDE---------GSGGPTSEN 146
Query: 179 ---LTVKTNELKWLPNG--SELPLETKPD-----SNPSSKPRTYTSFSSSQDLLPEFSNN 228
LT+KT + W P G + ET PD N +K + + + L E
Sbjct: 147 TVALTLKT-KCTWQPGGVARAVAGETDPDRLYVGHNVYAKDMRFEPNGNQAENLSEAEGK 205
Query: 229 PIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
IR DI I ++ PGQE+E+ HA+KGIG+ HAK+SPVATA YR++P I + + +
Sbjct: 206 HIRSTNPDILICKMRPGQELEIRMHAIKGIGQDHAKFSPVATASYRLMPTIDITKPIVGA 265
Query: 288 DAEKLVKTCPVNVFDIEDIGS-------------GKKRATVAQPRACTLCRECLRCGEEW 334
DA+K + P V ++ + S G+ +A VA P T+ RECLR E+
Sbjct: 266 DAKKFSRCFPSGVIRLDTVTSADIEKHPELEGKEGEPKAVVANPMNDTVSRECLR-HPEF 324
Query: 335 EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+ +V + R++DHFIF +ESTG + LF E+VK+L+ KC+R+
Sbjct: 325 KDKVKLGRIRDHFIFRVESTGQWESDELFLESVKLLKIKCQRI 367
>gi|322693281|gb|EFY85147.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium acridum CQMa 102]
Length = 1842
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 197/384 (51%), Gaps = 66/384 (17%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++ QR V NL+ +V Y G + G D++ LD F F V + + F
Sbjct: 1478 VQEQRNTVGINLETVTDVTSVDYPGHFP--GEDHAYSLDRFRAGFSVNFHQNDANSSSFS 1535
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PR 147
L+G+DA++ANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP
Sbjct: 1536 LMGLDASLANAFRRILIAEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFNGGRDGLKN 1595
Query: 148 LFEYMSENDTSNEK-------NTIVFKLHVLCE-------------RGGPRLTVKTNELK 187
++ + + + NT+ +L+V C + V ++
Sbjct: 1596 FLKWHKKPEAGEDPYAGCFDWNTVRLELNVTCTVNPDAAPDERDPLKAFNNAHVYAKDIV 1655
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
++P G ++ F S +D + P+ P DI IA+L P Q I
Sbjct: 1656 FVPTGRQV------------------EFFSGEDAI-----APVNP--DILIAKLRPRQTI 1690
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI- 306
L H KGIG HAK+SPVATA YR++P I +L+ + DAEK + P V +E +
Sbjct: 1691 NLSMHMHKGIGADHAKFSPVATASYRLMPTIKILKPILGADAEKFARCFPQGVIGLEKVT 1750
Query: 307 -------GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES 353
GS G+K+A V P T+ RECLR E+E +V + R +DHFIF+IES
Sbjct: 1751 PAEAKKAGSGYEGHAGEKKAVVKDPMKDTVSRECLRHA-EFEGKVKLGRRRDHFIFSIES 1809
Query: 354 TGALSPETLFTEAVKILEDKCERV 377
TG + LF EAVK ++ KC+++
Sbjct: 1810 TGQWDSDELFMEAVKHMKLKCKKL 1833
>gi|327297236|ref|XP_003233312.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
gi|326464618|gb|EGD90071.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
Length = 380
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 192/347 (55%), Gaps = 50/347 (14%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G +++ +D F ++E + + F LIG+DAAIANAFRRIL+AE+P +AIE V I
Sbjct: 38 GENHAWSIDRFSEGLKIEFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDP------RLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLAHRLGLIP+ R F+ E D T + NTIV +L
Sbjct: 98 QNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVK 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEF 225
C + N + P E P +++ +K + +
Sbjct: 158 ECTK----------------NRNAAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYF--H 199
Query: 226 SNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+ I+P DI +A+L PGQ+I++E H +KGIG HAK+SPVATA YR+LP+I +L +
Sbjct: 200 GDGVIQPCNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPI 259
Query: 285 EDEDAEKLVKTCPVNVFDIED--------IGS------GKKRATVAQPRACTLCRECLRC 330
DA K P V IE+ +GS G+K+A V P T+ RECLR
Sbjct: 260 LGNDAIKFASCFPRGVIGIENVTAVEAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLR- 318
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+E++ +V + RV+DHFIF IESTG + + +F E++KIL+ KC+R+
Sbjct: 319 HDEFKDKVKLGRVRDHFIFNIESTGQFNSDLMFLESIKILKLKCQRL 365
>gi|326475646|gb|EGD99655.1| DNA-directed RNA polymerase I and III [Trichophyton tonsurans CBS
112818]
gi|326485520|gb|EGE09530.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Trichophyton
equinum CBS 127.97]
Length = 380
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 192/347 (55%), Gaps = 50/347 (14%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G +++ +D F ++E + + F LIG+DAAIANAFRRIL+AE+P +AIE V I
Sbjct: 38 GENHAWSIDKFSEGLKIEFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDP------RLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLAHRLGLIP+ R F+ E D T + NTIV +L
Sbjct: 98 QNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVK 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEF 225
C + N + P E P +++ +K + +
Sbjct: 158 ECTK----------------NRNAAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYF--H 199
Query: 226 SNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+ I+P DI +A+L PGQ+I++E H +KGIG HAK+SPVATA YR+LP+I +L +
Sbjct: 200 GDGVIQPCNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPI 259
Query: 285 EDEDAEKLVKTCPVNVFDIED--------IGS------GKKRATVAQPRACTLCRECLRC 330
DA K P V IE+ +GS G+K+A V P T+ RECLR
Sbjct: 260 LGNDAVKFASCFPRGVIGIENVTAAEAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLR- 318
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+E++ +V + RV+DHFIF IESTG + + +F E++K+L+ KC+R+
Sbjct: 319 HDEFKDKVKLGRVRDHFIFNIESTGQFNSDLMFLESIKVLKLKCQRL 365
>gi|254574330|ref|XP_002494274.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|238034073|emb|CAY72095.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|328353904|emb|CCA40301.1| DNA-directed RNA Polymerase III subunit C5 [Komagataella pastoris
CBS 7435]
Length = 335
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 186/323 (57%), Gaps = 37/323 (11%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D + L F + ++V T + FDLI ID +IANAFRRI+I+E+P++++E V I N
Sbjct: 28 DYAWDLQKFKDTLEIKVGYRTDRTLNFDLIHIDTSIANAFRRIMISEVPSVSVEHVYINN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLCERGGPRL 179
N+SVIQDEVLA R+GL+P+ +DP ++ E++ ++NT+V L+V C +
Sbjct: 88 NSSVIQDEVLASRIGLVPLQIDPDRLSWVDRGVEESERFTDENTVVISLNVACTKN---- 143
Query: 180 TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE------FSNNPIRPM 233
P K +++P + R +S P+ F+++P+
Sbjct: 144 ----------------PHPAKNNNDPENLYRNSIVYSRDLKFEPQGRQVETFADSPVVAA 187
Query: 234 -LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI IA+L PGQEI L+AH + G+G HAK+SPV TA YR+LP I + + + +DAEK
Sbjct: 188 DPDIVIAKLRPGQEISLKAHCILGLGSDHAKFSPVCTASYRLLPVINITQPITGKDAEKF 247
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
K P V IE+ +A V R T+ RECLR E+E +V + R +DHFIF +E
Sbjct: 248 QKCFPKGVIAIEN-----GQAVVKDARRDTVSRECLR-HPEFEGKVKLARQRDHFIFNVE 301
Query: 353 STGALSPETLFTEAVKILEDKCE 375
STG + PE +F ++V+IL++K E
Sbjct: 302 STGCMPPEEIFFKSVRILKNKAE 324
>gi|320591803|gb|EFX04242.1| DNA-directed RNA polymerase 1 and 3 subunit [Grosmannia clavigera
kw1407]
Length = 376
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 138/378 (36%), Positives = 195/378 (51%), Gaps = 59/378 (15%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + G Y G D + +D F N +++ + + + F LIG
Sbjct: 14 RRQTVGVNYETVTNVSTTEFPGNYP--GEDLAWDVDEFRNKLQIQFHQNEQFEASFSLIG 71
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII----------- 143
+DA+IANAFRRI+I+E+PT+AIE I NNTSVIQDEVLAHRLGLIP
Sbjct: 72 VDASIANAFRRIMISEIPTVAIETAYIDNNTSVIQDEVLAHRLGLIPFTGGYDGLRNFIK 131
Query: 144 --------VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
DP F S + NTI KL V C R +T+ LK N
Sbjct: 132 WWKRPGPDADPNEFP------PSFDYNTIKLKLQVECTRNRSAAPGETDPLKLYHNAHVY 185
Query: 196 P--LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAH 252
+E P+ N +P ++ N IRP+ DI +A+L PGQ I++E H
Sbjct: 186 ARDIEFVPEGN---QPSVFS------------GENAIRPVNPDILVAKLRPGQAIDIEMH 230
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS---- 308
KGIG HAK+SPV TA YR+LP I +L+ + DA K P V +E +
Sbjct: 231 MHKGIGSDHAKFSPVCTASYRLLPTITILQPILGADAVKFASCFPDGVIGLEKVTRKDAA 290
Query: 309 ---------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSP 359
G +A V P T+ RECLR E++K+V + R +DHFI++IESTG +
Sbjct: 291 QDEAYVDHIGDDKAVVVDPMRDTVSRECLR-HPEFQKKVKLGRRRDHFIYSIESTGQWNS 349
Query: 360 ETLFTEAVKILEDKCERV 377
+ LF E++++L+ KC+++
Sbjct: 350 DELFLESIRLLKIKCQKM 367
>gi|170087654|ref|XP_001875050.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650250|gb|EDR14491.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 353
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 187/333 (56%), Gaps = 34/333 (10%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
Y G Y DN L+ F N +V+V RL+ ++FDL+G+DA+IANAFRRI+IAE+PT
Sbjct: 24 YPGHYPDE--DNEWSLEKFKKNLKVKVQRLSNLSIDFDLVGVDASIANAFRRIMIAEVPT 81
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN--DTSNEKNTIVFKLHVL 171
+ IE V + +NTSV+ DEVL+ RLGLIP+ +DP L M E D + ++NTIVF++ +
Sbjct: 82 VCIENVYVWDNTSVVVDEVLSQRLGLIPLNIDPDLI-VMKETSADQATDRNTIVFEIKLT 140
Query: 172 CERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE------F 225
CER P K ++P + SS P F
Sbjct: 141 CERN--------------------PKAKKDSTDPDESYINHEVLSSHLVWKPAGEQEEVF 180
Query: 226 SNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+ NP P +I +A+L PGQ++ +E HA+KG+GK HAK+ PVATA YR+LP I + + +
Sbjct: 181 AGNPPAPTNPNIVLAKLRPGQDVHVELHAMKGVGKDHAKYCPVATASYRLLPHIKIKKPI 240
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
EK K V I D + + R T+ RE LR E++ V + RV+
Sbjct: 241 PPHLGEKFQKCFSPGVIKI-DPRTKEVSVDEHNVRKDTVSREVLR-HPEFKDSVELSRVR 298
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
D F+F +ES GA SPE + TEA+K++ +K +++
Sbjct: 299 DFFLFNVESEGAYSPERMLTEAIKVMREKLKKI 331
>gi|315044489|ref|XP_003171620.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
gi|311343963|gb|EFR03166.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
Length = 380
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 191/345 (55%), Gaps = 46/345 (13%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G +++ +D F +++ + + F LIG+DAAIANAFRRIL+AE+P +AIE V I
Sbjct: 38 GENHAWSIDRFREGLKIDFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVD------PRLFEYMSEND-----TSNEKNTIVFKLHV 170
NNTSVIQDEVLAHRLGLIP+ R F+ E D T + NTIV +L
Sbjct: 98 QNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKAPKEGDPDSGSTHEDSNTIVLRLVK 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE----FS 226
C + + P G E P +++ +K + + S
Sbjct: 158 ECTKN-----------RSAPPGEEDPTILYNNAHIYAKDLVFEPQGRQEKYFHGDGAIQS 206
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
NP DI +A+L PGQ+I++E H +KGIG HAK+SPVATA YR+LP+I +L +
Sbjct: 207 CNP-----DILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILG 261
Query: 287 EDAEKLVKTCPVNVFDIED--------IGS------GKKRATVAQPRACTLCRECLRCGE 332
DA K P V +E+ +GS G+K+A V P T+ RECLR +
Sbjct: 262 NDAIKFASCFPRGVVAVENVTAAEAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLR-HD 320
Query: 333 EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
E++ +V + RV+DHFIF IESTG + + +F E++K+L+ KC+R+
Sbjct: 321 EFKDKVKLGRVRDHFIFNIESTGQFNSDHMFLESIKVLKLKCQRL 365
>gi|156849157|ref|XP_001647459.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
gi|156118145|gb|EDO19601.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
Length = 335
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 184/329 (55%), Gaps = 50/329 (15%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
N+ ++ F ++ + + + + FDLI ID +IANAFRRI+I+E+P++A+E V NN
Sbjct: 29 NAWDVNKFKDDLEINISSINSREANFDLINIDTSIANAFRRIMISEVPSVAVEYVYFLNN 88
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLCERG----- 175
TSV+QDEVLAHR+GL+P+ VDP + ++ E + ++NTIV L+V C
Sbjct: 89 TSVLQDEVLAHRIGLVPLKVDPDMLSWIDSELPEEEKFTDENTIVLSLNVKCTMNPDAPK 148
Query: 176 ---GPRLTVKTN-----ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
P++ K + +LK+ P G + + F+N
Sbjct: 149 DCTDPKILYKNSNVYARDLKFEPQGKQ---------------------------VESFAN 181
Query: 228 NPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
P+ P DI + +L PGQEI L+AH + GIG HAK+SPVATA YR++P I + + +
Sbjct: 182 YPVVPANPDILLCKLRPGQEISLKAHCILGIGSDHAKFSPVATASYRLMPHINITQPITG 241
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
EDA+K K V I D G A V R T+ RE R E+E +V + RV++H
Sbjct: 242 EDAKKFQKYFMPGVIGINDNG----EAYVKDARKDTVSREVFR-HPEFEGKVKLGRVRNH 296
Query: 347 FIFTIESTGALSPETLFTEAVKILEDKCE 375
FI +ESTGA++PE +F ++V+IL +K E
Sbjct: 297 FIVNVESTGAMTPEEIFFKSVRILRNKAE 325
>gi|389739703|gb|EIM80896.1| hypothetical protein STEHIDRAFT_105319 [Stereum hirsutum FP-91666
SS1]
Length = 369
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 193/337 (57%), Gaps = 47/337 (13%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
Y G Y D+S L F +V+V L+ +EFDL+G+DA+IAN+ RRIL+AE+PT
Sbjct: 38 YPGHYPDE--DHSWDLQKFKETLKVKVQSLSNRSIEFDLVGVDASIANSLRRILLAEVPT 95
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCE 173
+AIE V + NNTSV+ DEV AHRLG+IP+ + P+L + + ND ++NT+VFKL+V+CE
Sbjct: 96 IAIELVYVWNNTSVMVDEVFAHRLGMIPLNIPPQLMDMRTVNDQPTDRNTVVFKLNVVCE 155
Query: 174 R--GGPRLT-----------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220
R P+ + V ++ LKW P G + T F ++
Sbjct: 156 RNPSAPKDSTDPFELYTNHEVLSSHLKWEPAGEQA-----------------TVFEAAS- 197
Query: 221 LLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L+P +N +I + +L PGQEI++E HAVKG+ K HAK+ VATA YR+LP I+L
Sbjct: 198 LVPAPTNG------NIVLNKLRPGQEIDVEMHAVKGVAKDHAKFQAVATASYRLLPLIIL 251
Query: 281 --LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP--RACTLCRECLRCGEEWEK 336
+ V A K + V ++ K +V + R ++ RE LR E+E
Sbjct: 252 NPSKPVPPHLATKFQQCFSPGVIRVD---PKTKEVSVDEEGMRKESMSREVLR-HPEFEG 307
Query: 337 RVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
V++ R +DHFIF IES GA +PE LF E++K++ +K
Sbjct: 308 CVTLARKRDHFIFNIESEGAYAPEALFLESIKVMREK 344
>gi|150951291|ref|XP_001387588.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
gi|149388472|gb|EAZ63565.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
Length = 336
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 190/351 (54%), Gaps = 39/351 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E+ R + D P H N G YA ++ F + F + + T FD
Sbjct: 9 VEYNRVTNTSSTDFPGHQAN----GDYA-------WDIEKFKDKFEINISYKTDRTANFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI ID AIANAFRRI+I+E+P++A E V + NTSVIQDEVLAHR+GLIP+ VDP +
Sbjct: 58 LINIDTAIANAFRRIMISEVPSVAAEAVYMFMNTSVIQDEVLAHRIGLIPLRVDPDKMNW 117
Query: 152 M----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ S D E NTIV L V+C + P S P E +++ +
Sbjct: 118 VDKTQSPEDRYTEDNTIVLTLDVVCTKN-----------PHAPKNSTNPKELYRNAHVYA 166
Query: 208 KPRTYTSFSSSQDL---LPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
+ + +L LP + +P DI IA+L PGQEI L AH + G+G HAK+
Sbjct: 167 RDLKFEPHGKQAELFKDLPVVAADP-----DILIAKLRPGQEISLRAHCILGVGCDHAKF 221
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPV+TA YR++P I ++E + + A + K P V I G A V R T+
Sbjct: 222 SPVSTASYRLMPVIDIVEPIRGDSAVRFQKCFPSGVIGINADGE----AYVKDARKDTVS 277
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
RE LR EE++ +V + R +DHFIF +ESTGA++PE +F +++ +L++K E
Sbjct: 278 REVLR-HEEFDGKVKLGRKRDHFIFNVESTGAMAPEEIFFKSLLVLKNKVE 327
>gi|258576271|ref|XP_002542317.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
gi|237902583|gb|EEP76984.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
Length = 378
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 186/327 (56%), Gaps = 39/327 (11%)
Query: 78 VEVIRLTKDDME--FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++VI D +E F LIG+DAAIANAFRRILIAE+P++AIE V I NNTSVI DEVL+H
Sbjct: 48 LQVIFHKNDPLEASFSLIGVDAAIANAFRRILIAEIPSLAIEFVFIHNNTSVIHDEVLSH 107
Query: 136 RLGLIPIIVDPRLFEYMS--------ENDT---SNEKNTIVFKLHVLCERGGPRLTVKTN 184
RLGL+P+ +M+ E D+ +++ NTIV KL+ C + P +
Sbjct: 108 RLGLVPLKGSLDGINWMTWFRMPQEGEEDSASVASDHNTIVLKLNAECTK-NPNASPDEE 166
Query: 185 ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
+ L N + + D R T FS P+ P P DI +A+L PG
Sbjct: 167 DPTVLYNNAHV---YARDIVFEPVGRQTTFFSG-----PDGEIQPSNP--DILLAKLRPG 216
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
Q+I++E H +KGIG+ HAK+SPVATA YR+LP+I + + +DA K P V IE
Sbjct: 217 QKIDIEMHCIKGIGQDHAKFSPVATASYRLLPDIQITRPILGDDAVKFANCFPPGVIGIE 276
Query: 305 DIGS--------------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFT 350
+ + G+K+A V P T+ RECLR EE++ +V + R++DHFIF
Sbjct: 277 HVTADEAEQKGTGYEGHKGEKKAVVVDPFKDTVSRECLR-HEEFKDKVKLGRIRDHFIFN 335
Query: 351 IESTGALSPETLFTEAVKILEDKCERV 377
IES G + + LF E+VK+L KC R+
Sbjct: 336 IESVGQFNSDLLFIESVKVLRLKCARL 362
>gi|156839627|ref|XP_001643502.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114116|gb|EDO15644.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 320
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 186/329 (56%), Gaps = 48/329 (14%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
DN + F N + + ++ + + DLI +D +IANA RRI+I+E+P++A E + I N
Sbjct: 14 DNIWDANKFRENLEINISKVGERETNLDLINVDTSIANALRRIMISEVPSVAAEYIYILN 73
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLCERG--GP 177
NTSVIQDEV+A R+GLIP+ VDP +++ E++ ++NTIV L+V C R P
Sbjct: 74 NTSVIQDEVIAQRIGLIPLKVDPDRLTWLNNDLPEDEKFTDENTIVLSLNVKCTRNLDAP 133
Query: 178 R-----------LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
+ + +LK+ P G + ET DS P S
Sbjct: 134 KDCTDPSILYHNAHIYARDLKFEPQGKQ--EETFADS-------------------PVVS 172
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
+P DI IA+L PGQEI L AH + GIG HAK+SPV TA YR++P+I++ E ++
Sbjct: 173 ADP-----DILIAKLRPGQEISLRAHCILGIGADHAKFSPVCTASYRLMPKIIITEKIKG 227
Query: 287 EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
E A++ K P V DI + A V R T+ RE LR EE++ +V + RV++H
Sbjct: 228 ESAKRFQKCFPPGVIDINE----NDEAYVKDARKDTMTREVLR-HEEFQDKVKLDRVRNH 282
Query: 347 FIFTIESTGALSPETLFTEAVKILEDKCE 375
FIF IE+ GA+S E +F ++VKIL++K E
Sbjct: 283 FIFNIETVGAMSAEEIFLKSVKILKNKAE 311
>gi|346979352|gb|EGY22804.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
dahliae VdLs.17]
Length = 375
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 183/358 (51%), Gaps = 72/358 (20%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G DNS LD F NFRV +L+ + F LIG+DA+IANA RRILI+E+PT AIE V I
Sbjct: 39 GEDNSWSLDTFRENFRVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTFAIETVYI 98
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPR----LFEYMSENDTSN-----EKNTIVFKLHVLC 172
NNTSVIQDEVLAHRLGL+P + + +N + NTI +L + C
Sbjct: 99 YNNTSVIQDEVLAHRLGLVPFTANKAGLRDFLRWRKKNPDGTPGDIFDYNTIQLRLRIEC 158
Query: 173 ER---GGP----------RLTVKTNELKWLPNGSEL-----PLETKPDSNPSSKPRTYTS 214
R P V ++++++P+G +L PL T +NP
Sbjct: 159 TRNPDAAPGEIDATKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNP--------- 209
Query: 215 FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
DI +A+L PGQ +E++ H KGIG HAK+SPVATA YR+
Sbjct: 210 --------------------DILLAKLRPGQVLEMDMHMHKGIGSDHAKFSPVATASYRL 249
Query: 275 LPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------------GKKRATVAQPRA 320
LP I + + DAEK + P V IE + + G+++A V
Sbjct: 250 LPTITITRPILGADAEKFARCFPAGVIGIERVSADEARTPGSGYEGHEGERKAVVRDAMK 309
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE-STGALSPETLFTEAVKILEDKCERV 377
T+ RECLR E++ +V + R +DHFIF IE +TG + L EA+K ++ KC R+
Sbjct: 310 DTVSRECLRHA-EFQGKVKLGRRRDHFIFAIEAATGQWDSDELLLEAIKTMKKKCARL 366
>gi|393909614|gb|EFO27840.2| hypothetical protein LOAG_00653 [Loa loa]
Length = 684
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 184/342 (53%), Gaps = 63/342 (18%)
Query: 64 DNSLQLD--HFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
+N++Q D + + +V +I ++D M EFDL+G++A IANA RRI IAELPTMAIEKV
Sbjct: 360 NNAIQWDVTTYISKIKVFIINESEDGMALEFDLVGVEAPIANAIRRIFIAELPTMAIEKV 419
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY--------------MSENDTSNEKNTIV 165
+ NTS+I DEVL+HRLGL+PI DPRLF+ +E + + ++
Sbjct: 420 YLYQNTSIIPDEVLSHRLGLLPIKADPRLFKMPLAQVVGIDESGVDCNEEPAGDPERNLI 479
Query: 166 FKLHVLCERGGPRLT-------------VKTNELKWLPNGSELPLETKPDSNPSSKPRTY 212
F++ V C R L V +N KW+P G +
Sbjct: 480 FEIKVTCSRNSNALKTATNPKEIYENAFVYSNAFKWIPIGDQ------------------ 521
Query: 213 TSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 272
SSS P ++ DI +A+L PGQEIE H +KG+G+ HAK+SPVATA Y
Sbjct: 522 ---SSSLPYPPAMVHD------DILVAQLRPGQEIEARCHCLKGLGRDHAKFSPVATASY 572
Query: 273 RMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGE 332
R+LP+IVL DA+++ + V +I+ G A V R T R LR E
Sbjct: 573 RLLPQIVLKRKFSGADAQRIKSSFSEGVIEIDADGV----AVVRDARCDTCSRNILR-HE 627
Query: 333 EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
+ + + + R+KDHFIF++ESTGAL L EA K++E+KC
Sbjct: 628 DLAEHIELSRIKDHFIFSVESTGALRSAELVVEACKVMEEKC 669
>gi|268556380|ref|XP_002636179.1| Hypothetical protein CBG01436 [Caenorhabditis briggsae]
Length = 367
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 176/323 (54%), Gaps = 38/323 (11%)
Query: 72 FCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
+C+ +V ++ + D M EFD+ I+A IANA RRILIAE+PTMA+EK+ + NTSVIQ
Sbjct: 51 YCSQIKVAMVNESTDKMTLEFDITRIEAPIANALRRILIAEVPTMALEKIYLYQNTSVIQ 110
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNT-------------IVFKLHVLCERG 175
DEVL HRLGL+P+ VDPR F++ +E NEK ++FK++V C +
Sbjct: 111 DEVLCHRLGLLPLRVDPRGFQFPTEKVVGINEKGVDCEEEPTGDPARHLIFKINVTCTK- 169
Query: 176 GPRLTVKTNELKWLPNGSELPLETKPDS---NPSSKPRTYTSFS-SSQDLLPEFSNNPIR 231
N + +P T P N S R + Q + N P
Sbjct: 170 ---------------NRNAVPTATDPKQLYHNSSVYSRAFEWVPIGKQSGNYDKKNVPKM 214
Query: 232 PMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L ++ E AE+
Sbjct: 215 VSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAER 274
Query: 292 LVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTI 351
L V IE G+ K+ A V R T R R E+ K V + + K HFIF++
Sbjct: 275 LQSVFSEGVIGIEKKGA-KRIAVVKDARKDTCSRNVFR-HEDLAKVVQLGKNKQHFIFSV 332
Query: 352 ESTGALSPETLFTEAVKILEDKC 374
ESTGAL L EA K++E KC
Sbjct: 333 ESTGALKSAELVVEACKVMETKC 355
>gi|25155095|ref|NP_504166.2| Protein RPAC-40 [Caenorhabditis elegans]
gi|351060931|emb|CCD68663.1| Protein RPAC-40 [Caenorhabditis elegans]
Length = 366
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 183/334 (54%), Gaps = 42/334 (12%)
Query: 64 DNSLQLD--HFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
D++ Q D +C+ +V ++ + D M EFD+ I+A IANA RR+LIAE+PTMA+EK+
Sbjct: 40 DDTKQFDINEYCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKI 99
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNT-------------IV 165
+ NTSVIQDEVL HRLGL+P+ VDPR F++ E NEK ++
Sbjct: 100 YLYQNTSVIQDEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLI 159
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS---NPSSKPRTYTSFSSSQDLL 222
FK++V C + N + +P T P N S R + + D
Sbjct: 160 FKINVSCTK----------------NRNAVPTATDPKQLYHNSSVYSRAF-EWVPIADQK 202
Query: 223 PEFSNNPIRPML--DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+F+ M+ DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L
Sbjct: 203 TQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRL 262
Query: 281 LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSI 340
++ E AE+L V IE G+ K+ A V R T R R E+ K V +
Sbjct: 263 NAEISGEAAERLKSVFSEGVIAIEKKGA-KRIAVVKDARKDTCSRNVFR-HEDLSKVVQL 320
Query: 341 RRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
+ K HFIF++ESTGAL L EA K++E KC
Sbjct: 321 GKNKQHFIFSVESTGALKSSELVVEACKVMEIKC 354
>gi|124804792|ref|XP_001348113.1| DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
gi|23496369|gb|AAN36026.1|AE014842_48 DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
Length = 333
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 185/349 (53%), Gaps = 38/349 (10%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
+++++ VQ + P + + G+Y +N + F N + VI+ ++ +
Sbjct: 3 NVKYRDNFVQLGEEGPRNATTTNFYGSYYFSDKENYFDIRKFEENLEMNVIKNEENILIL 62
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
++ +D +IANA RRI+++E+PT+AIEKV + NT +I DE+L HRLGLIP D L
Sbjct: 63 EIKNMDVSIANALRRIMLSEVPTIAIEKVNMYQNTGIIADEILCHRLGLIPFKFDADLIN 122
Query: 151 YMSENDTSNEKNTIVFKLHVL--CERGG--PRLTVKTNELKWLPNGSELPLETKPDSNPS 206
Y +N+ N N FKLHV +R G ++ + +LKW P + + K + NP
Sbjct: 123 YKEDNEKYNHLNCFCFKLHVKFSSKRTGNDNYQSIYSKDLKWCPINEQQRI--KFEKNP- 179
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
P+ +I I ++ GQEIEL KGIGKTHAKWSP
Sbjct: 180 --PKVVDE--------------------NILITKISSGQEIELICFLQKGIGKTHAKWSP 217
Query: 267 VATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
V TA Y+M P E + E+ + LV CP VFDIED ++ V P +C+ C
Sbjct: 218 VCTAVYKMYPHFSFNTNEQLSYEEKKDLVNICPQKVFDIED----SQQIFVKNPLSCSTC 273
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
R C+ E++ K++S ++ K+HFIFTIESTG S +F +A+ IL K
Sbjct: 274 RVCI---EKYPKKISFQKEKNHFIFTIESTGCFSAADIFKKALFILRQK 319
>gi|336464897|gb|EGO53137.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2508]
Length = 378
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/361 (36%), Positives = 195/361 (54%), Gaps = 35/361 (9%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G Y G D+S ++ F + RVE + + +F LIG
Sbjct: 24 KRNTVHINAETVTNVTSTDFPGFYP--GEDHSWDIEKFRESVRVEFHQNDPYEAQFSLIG 81
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP----RLFE 150
+DA+IANAFRRI+IA++PT+AIE + + NNTSVIQDEVL HRLGLIP +
Sbjct: 82 VDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLK 141
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ + +T + NT+ +L V CE NE P S+ P E +++ +K
Sbjct: 142 WYKKGETPCDYNTVELELKVKCE---------NNEN--APADSKDPKELYHNAHVYAKDI 190
Query: 211 TYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
+ N IRP DI +A++ PGQEI+L H KG+G HAK+SPVAT
Sbjct: 191 KFVPKGRQAKYFS--GENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVAT 248
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GSGKK------RATV 315
A YR++P I +LE + DAEK K P V +E + GSG + +A V
Sbjct: 249 ASYRLMPTITILEPILGRDAEKFQKCFPEGVIGLEKVTKEEAKKKGSGYEGHEGELKAVV 308
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
T+ RECLR +E++ +V + R +DHFI+ +ESTG + +F E++ L++K +
Sbjct: 309 LDAMRDTVSRECLRH-DEFKDKVKLGRRRDHFIYLVESTGQWESDAIFLESIAHLKEKAK 367
Query: 376 R 376
R
Sbjct: 368 R 368
>gi|324508945|gb|ADY43772.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Ascaris suum]
Length = 343
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 181/322 (56%), Gaps = 35/322 (10%)
Query: 69 LDHFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
++ + + ++++I + D+M EFD+I ++A IANA RRIL+AE+PTMA EK+ + NTS
Sbjct: 25 VERYISRIKIDIINESDDEMTLEFDVIHVEAPIANAMRRILLAEVPTMAFEKIYLYQNTS 84
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEY--------------MSENDTSNEKNTIVFKLHVLC 172
+IQDEVL HRLGL+PI DPRLFE + E + K ++F+L V C
Sbjct: 85 IIQDEVLCHRLGLLPIRADPRLFEMPLTKVIGINETGVDVDEEPPGDPKRNLIFELKVSC 144
Query: 173 ERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP 232
+R K N P + P E ++ SK + LP + N +
Sbjct: 145 KR-------KPN----APKSATDPQEIFDNAVVYSKSFEWIPIGDQATSLP-YPPNMVHD 192
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI +A+L PGQEIE H VKGIG+ HAK+SPVATA YR+LP+IV+ E EDAE++
Sbjct: 193 --DILVAKLRPGQEIEARCHCVKGIGRDHAKFSPVATASYRLLPDIVIKEKFSGEDAERI 250
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
+ V I+ G A V R T R LR E+ + + + R KDHFIF++E
Sbjct: 251 KNSFSDGVIGIDADGF----AYVKDARRDTCSRNILR-HEDLAEHIELSRRKDHFIFSVE 305
Query: 353 STGALSPETLFTEAVKILEDKC 374
STGAL L EA +++E+KC
Sbjct: 306 STGALKSSELVVEACRVMEEKC 327
>gi|302414524|ref|XP_003005094.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
gi|261356163|gb|EEY18591.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
Length = 375
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 184/358 (51%), Gaps = 72/358 (20%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G DNS LD F NFRV +L+ + F LIG+DA+IANA RRILI+E+PT+AIE V I
Sbjct: 39 GEDNSWSLDTFRENFRVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYI 98
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPR----LFEYMSENDTSN-----EKNTIVFKLHVLC 172
NNTSVIQDEVLAHRLGL+P + + +N + NT+ +L + C
Sbjct: 99 YNNTSVIQDEVLAHRLGLVPFTANKAGLRDFLRWRKKNPDGTPGDIFDYNTVQLRLRIEC 158
Query: 173 ER---GGP----------RLTVKTNELKWLPNGSEL-----PLETKPDSNPSSKPRTYTS 214
R P V ++++++P+G +L PL T +NP
Sbjct: 159 TRNPDAAPGEIDSTKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNP--------- 209
Query: 215 FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
DI +A+L PGQ +E++ H KGIG HAK+SPVATA YR+
Sbjct: 210 --------------------DILLAKLRPGQVLEMDMHMHKGIGSDHAKFSPVATASYRL 249
Query: 275 LPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------------GKKRATVAQPRA 320
LP I + + DA+K + P V IE + + G+++A V
Sbjct: 250 LPTITITRPILGADADKFARCFPAGVIGIERVSADEARTPGSGYEGHEGERKAVVRDAMK 309
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE-STGALSPETLFTEAVKILEDKCERV 377
T+ RECLR E++ +V + R +DHFIF IE +TG + L EA+K ++ KC R+
Sbjct: 310 DTVSRECLRHA-EFQGKVKLGRRRDHFIFAIEAATGQWDSDELLLEAIKTMKKKCARL 366
>gi|322708977|gb|EFZ00554.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 381
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 200/377 (53%), Gaps = 52/377 (13%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
+E QR V NL+ +V Y G + G D++ LD F F V + + F
Sbjct: 17 VEEQRNTVGINLETVTDVTSVDYPGHFP--GEDHAYSLDRFRAGFSVNFHQNEANSSSFS 74
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L+G+DA++ANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP +
Sbjct: 75 LMGLDASLANAFRRILIAEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFNGGRDGLKN 134
Query: 152 M--------SENDTSN---EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
+E D + NT+ +L+V C TV + P+ + PLE
Sbjct: 135 FLKWHKKPEAEEDPYAGCFDYNTVRLELNVTC-------TVNPDAA---PDERD-PLEAF 183
Query: 201 PDSNPSSKPRTYT------SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+++ +K + F S +D + P+ P DI IA+L P Q I L H
Sbjct: 184 NNAHVYAKDIVFVPTGKQVEFFSGEDAIA-----PVNP--DILIAKLRPRQTINLSMHMH 236
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-------- 306
KGIG HAK+SPVATA YR++P I +L+ + DAEK + P V +E +
Sbjct: 237 KGIGADHAKFSPVATASYRLMPTIKILKPILGADAEKFARCFPQGVIGLEKVTPAEAKKA 296
Query: 307 GSGK------KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
GSG K+A V T+ RECLR E+E +V + R +DHFIF+IESTG +
Sbjct: 297 GSGYEGHAGVKKAVVKDAMKDTVSRECLRHA-EFEGKVKLGRRRDHFIFSIESTGQWDSD 355
Query: 361 TLFTEAVKILEDKCERV 377
LF EA+K ++ KC+++
Sbjct: 356 ELFMEAIKHMKLKCKKL 372
>gi|156099087|ref|XP_001615546.1| DNA-directed RNA polymerase I [Plasmodium vivax Sal-1]
gi|148804420|gb|EDL45819.1| DNA-directed RNA polymerase I, putative [Plasmodium vivax]
Length = 333
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 183/349 (52%), Gaps = 40/349 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++F+ V+ + P + + G+Y ++ ++ F N +++ + ++ + +
Sbjct: 4 VKFRDNFVKLKEEGPRNATTTNFYGSYFLSENEHLFDINEFEKNLEMKMHKNEENLLILE 63
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ ++ +IANA RRI++AE+PT+AIEKV I NT +I DE+L HRLGLIP D L +
Sbjct: 64 VKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTGIIADEILCHRLGLIPFKFDADLINF 123
Query: 152 MSENDTSNEKNTIVFKLHV-LCERGGPRLT---VKTNELKWLPNGSELPLETKPDSNPSS 207
E + N N FKLHV ++ G T + + +LKW P N
Sbjct: 124 KEEYEKYNHLNCFCFKLHVKFTKKAGSSETCQSIYSRDLKWCP------------INEHQ 171
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K R F NP R + D I I +L GQEIEL KGIGKTHAKWSP
Sbjct: 172 KAR--------------FQKNPPRVVDDNILITKLSNGQEIELICFLEKGIGKTHAKWSP 217
Query: 267 VATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
V TA Y+M P E E+ + LV CP NVFD+ED + P C+ C
Sbjct: 218 VCTAVYKMYPAFSFNTCEKFTQEEKKDLVNICPKNVFDVEDSDT----LVAKNPLNCSSC 273
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
R C+ E++ K++S +VK+HFIFTIESTG S +F +A+ IL+DK
Sbjct: 274 RVCI---EKYPKKISFEKVKNHFIFTIESTGCFSSADIFRKALLILKDK 319
>gi|330921707|ref|XP_003299536.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
gi|311326761|gb|EFQ92375.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
Length = 376
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 183/349 (52%), Gaps = 50/349 (14%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G ++ LD+F +NF V R D +F L GID ++ANAFRRIL++E+PT+AIE V I
Sbjct: 36 GENHEWNLDYFRDNFNVVFHRNDPTDAQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYI 95
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM------------SENDTSNEKNTIVFKLH 169
NTS+IQDEVLAHRLGLIP+ D M S N TS NT+ +L
Sbjct: 96 YQNTSIIQDEVLAHRLGLIPLCGDRASLRAMKWYAKPTDEDEGSGNPTSC--NTVALELK 153
Query: 170 VLCERGGPRLTVKTNELKWLPNG--SELPLETKPDS-----NPSSKPRTYTSFSSSQDLL 222
+C W P G + ET PD N +K +
Sbjct: 154 AMC--------------TWQPGGLARAVAGETDPDKLYVGHNVYAKDIRFEPNGDQAQNF 199
Query: 223 PEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLL 281
+ IR DI I ++ PGQEI L HA+KGI + HAK+SPVATA YR++P I +
Sbjct: 200 SQAEGKHIRSTNPDILICKMRPGQEINLRMHAIKGISQDHAKFSPVATASYRLMPTIDIT 259
Query: 282 EDVEDEDAEKLVKTCPVNVFDIEDIGS-------------GKKRATVAQPRACTLCRECL 328
+ + DA+K + P V ++ + S G+ +A V P T+ RECL
Sbjct: 260 KPIVGADAKKFSRCFPSGVIRLDTVTSADIEKHPELEGKEGEPKAVVENPMNDTVSRECL 319
Query: 329 RCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
R E++ +V + R++DHFIF +ESTG + LF E+VK+L+ KC+R+
Sbjct: 320 R-HPEFKDKVKLGRIRDHFIFRVESTGQWESDELFLESVKLLKIKCQRI 367
>gi|392593120|gb|EIW82446.1| hypothetical protein CONPUDRAFT_136940 [Coniophora puteana
RWD-64-598 SS2]
Length = 358
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 190/347 (54%), Gaps = 53/347 (15%)
Query: 48 HTENVM---YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFR 104
H NV Y G Y D+S D F V+V RL+ ++FDL+G+DA+IANAFR
Sbjct: 18 HVSNVSSTDYPGHYPHE--DHSWDPDQFRQKCNVQVNRLSNRSIDFDLVGVDASIANAFR 75
Query: 105 RILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNT 163
RILIAE+PT+AIE+V + NNTSVI DEVLAHRLGL+P+ VDP E+ S + + ++NT
Sbjct: 76 RILIAEVPTIAIEQVYVWNNTSVIVDEVLAHRLGLVPLNVDPSFLEFKESPSIQATDRNT 135
Query: 164 IVFKLHVLCERG--------GPRLT-----VKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+VFKL V C R P++ V +++L+W+P G + + PS
Sbjct: 136 LVFKLEVTCTRNRNTPKDVTDPKMLYNNSEVLSSDLRWVPQGEQEEIFAANIPTPS---- 191
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
NP +I +A+L PGQE+ +E HAVKG+GK HAK+ VATA
Sbjct: 192 -----------------NP-----NIVLAKLRPGQEVNMELHAVKGVGKDHAKFCAVATA 229
Query: 271 WYRMLPEIVLLED--VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP--RACTLCRE 326
YR+LP +VL + + A K K V ++ + K +V + R ++ RE
Sbjct: 230 SYRLLPLVVLNPEKPIPPSSAHKFQKCFSPGVIRVDPV---TKEVSVDEKNLRNESMSRE 286
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
R E+E + RV+DHFIF +ES G PE L E++K++ K
Sbjct: 287 VYR-HVEFEDCCQLARVRDHFIFNVESEGFYPPERLLPESIKVMRSK 332
>gi|336263008|ref|XP_003346286.1| hypothetical protein SMAC_05823 [Sordaria macrospora k-hell]
gi|380093615|emb|CCC08579.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 378
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 193/361 (53%), Gaps = 35/361 (9%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G Y G D+S ++ F N RV + + +F LIG
Sbjct: 24 KRNTVHINAETVTNVTSTDFPGFYP--GEDHSWDIEKFRENVRVVFHQNDPYEAQFSLIG 81
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP----RLFE 150
+DA+IANAFRRI+IA++PT+AIE + + NNTSVIQDEVL HRLGLIP +
Sbjct: 82 VDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLK 141
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ + +T + NT+ +L V CE + P S+ P E +++ +K
Sbjct: 142 WYKKGETPCDYNTVELELKVKCENN-----------QNAPTDSKDPKELYHNAHVYAKDI 190
Query: 211 TYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
+ N IRP DI +A++ PGQEI+L H KG+G HAK+SPVAT
Sbjct: 191 KFVPKGRQAKYFS--GENVIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVAT 248
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GSGKK------RATV 315
A YR++P I +LE + DAEK K P V +E + GSG + +A V
Sbjct: 249 ASYRLMPTITILEPILGRDAEKFQKCFPKGVIGLEKVTKEEAKQKGSGYEGHEGELKAVV 308
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
T+ RECLR +E++ +V + R +DHFI+ +ESTG + +F E++ L++K +
Sbjct: 309 LDAMRDTVSRECLRH-DEFKDKVKLGRRRDHFIYLVESTGQWESDAIFLESIAHLKEKAK 367
Query: 376 R 376
R
Sbjct: 368 R 368
>gi|149247366|ref|XP_001528095.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
gi|146448049|gb|EDK42437.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
Length = 336
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/349 (36%), Positives = 191/349 (54%), Gaps = 35/349 (10%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
IE+ R + D P H ++ YS ++ F ++F +++ + + FD
Sbjct: 9 IEYNRVTNTASTDFPGHQQHGDYS-----------WNIEKFKDSFEIKITNIAERSATFD 57
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
LI +D +IANAFRRI+IAE+P++A E V + NTSVIQDEVLAHR+GLIP+ VDP +
Sbjct: 58 LIHVDTSIANAFRRIMIAEVPSVAAETVYLYMNTSVIQDEVLAHRIGLIPLKVDPDSLTW 117
Query: 152 ----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ E++ E NTIV L V C + P S P E +S+ +
Sbjct: 118 VDKKLDESERYTEDNTIVLTLDVACSKN-----------LQAPKNSTDPKEMYKNSHVYA 166
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ F L ++ ++P+ P DI +A+L PGQEI + H + G+G HAK+SP
Sbjct: 167 RD---LKFEPQGSQLEKYKDSPVVPCDPDILLAKLRPGQEISMRVHCILGLGCDHAKFSP 223
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I + E + + A K K P V I+D G A V R T+ RE
Sbjct: 224 VATASYRLLPVIDIKEPITGDLARKFQKCFPPGVIGIKDDG----EAYVEDARKDTVSRE 279
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
LR E+E +V + R +D+FIF +ESTGA+ P +F +++++L+ K E
Sbjct: 280 VLR-HPEFEGKVKLGRQRDYFIFNVESTGAMPPCEIFLKSIRVLKSKAE 327
>gi|68069197|ref|XP_676509.1| DNA-directed RNA polymerase I [Plasmodium berghei strain ANKA]
gi|56496241|emb|CAH97452.1| DNA-directed RNA polymerase I, putative [Plasmodium berghei]
Length = 334
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/356 (34%), Positives = 188/356 (52%), Gaps = 41/356 (11%)
Query: 31 HIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEF 90
+I+++ V+ + P + + G+Y +N + F N +++I+ ++ +
Sbjct: 3 NIKYKDQFVKMGQEGPRNVTTTNFYGSYFLTENENFFDIKKFEENLEMKIIKNEENLLIL 62
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
++ ++ +IANA RRI+I+E+PT+AIEKV I NT VI DE+L HRLGLIP D L
Sbjct: 63 EIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPFKFDADLIN 122
Query: 151 YMSENDTSNEKNTIVFKLHVLCER------GGPRL-TVKTNELKWLPNGSELPLETKPDS 203
+ ++ N N FKLHV C G + + +LKW P E + K +S
Sbjct: 123 FKDTHEKYNNLNCFCFKLHVKCNSINNNKIGNENYQCIYSKDLKWCPLNEEQKI--KFES 180
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
NP P+ +I I +LG GQEIEL KGIGKTHAK
Sbjct: 181 NP---PKVVDD--------------------NILITKLGNGQEIELICFLEKGIGKTHAK 217
Query: 264 WSPVATAWYRMLP--EIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
WSPV TA Y+M P + + E + + + ++ CP NVFDIE+ G+ P C
Sbjct: 218 WSPVCTAVYKMFPTFDFDVHEKFTNYEKKDILSICPKNVFDIEESGN----LVAKNPLDC 273
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+ CR C+ E++ +++S ++ K+HFIFT+ESTG S +F +A+ IL++K V
Sbjct: 274 SSCRACI---EKYPQKISFQKKKNHFIFTVESTGCFSSANIFKKALNILKEKVMNV 326
>gi|389583971|dbj|GAB66705.1| DNA-directed RNA polymerase I, partial [Plasmodium cynomolgi strain
B]
Length = 333
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 183/349 (52%), Gaps = 40/349 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++F+ V+ + P + + G+Y ++ ++ F N +++ + ++ + +
Sbjct: 4 VKFRDNFVKLKEEGPRNATTTNFYGSYFLSENEHMFDINEFEKNLEMKMHKNEENLLILE 63
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ ++ +IANA RRI++AE+PT+AIEKV I NT +I DE+L HRLGLIP D L +
Sbjct: 64 VKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTGIIADEILCHRLGLIPFKFDADLINF 123
Query: 152 MSENDTSNEKNTIVFKLHV-LCERGGPRLT---VKTNELKWLPNGSELPLETKPDSNPSS 207
E + N N FKLHV ++ G T + + +LKW P N
Sbjct: 124 KEEYEKYNHLNCFCFKLHVKFTKKVGSSETSQSIYSRDLKWCP------------INEQQ 171
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K R F NP R + D I I +L GQEIEL KGIGKTHAKWSP
Sbjct: 172 KAR--------------FQKNPPRVVDDNILITKLSNGQEIELICFLEKGIGKTHAKWSP 217
Query: 267 VATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
V TA Y+M P E + E+ LV CP NVFD+ED + P C+ C
Sbjct: 218 VCTAVYKMYPAFSFNTCEKLTKEEKHDLVSICPKNVFDVEDSDT----LVAKNPLNCSSC 273
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
R C+ E++ K++S +VK+HFIFTIESTG S +F +A+ IL+DK
Sbjct: 274 RVCI---EKYPKKISFEKVKNHFIFTIESTGCFSSADIFRKALLILKDK 319
>gi|346324382|gb|EGX93979.1| DNA-directed RNA polymerases I [Cordyceps militaris CM01]
Length = 380
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 147/384 (38%), Positives = 197/384 (51%), Gaps = 68/384 (17%)
Query: 33 EFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
E +R R V N + ++ Y G + G D + L+ F + F V+ + F
Sbjct: 17 ELERRRTVNINKETVTDISSIDYPGHFP--GEDAAFTLERFQSGFSVDFHHNDQFHAAFS 74
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-PRLFE 150
LIG+DA++ANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP L +
Sbjct: 75 LIGLDASLANAFRRILIAEIPTLAIENVFIENNTSVIQDEVLAHRLGLIPFQGGRAGLQD 134
Query: 151 YM--------SENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++ +E+D + + NT+ +L+V C PN P ET
Sbjct: 135 FLKWYKKPADAEDDYAGGFDYNTVRLELNVTC----------------TPNKDAAPGETD 178
Query: 201 PDSN--------------PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
P P + TY FS + + P NP DI IA++ P Q
Sbjct: 179 PTKAYHNAHVYARDIVFVPMGEQETY--FSGADAIAPV---NP-----DILIAKMRPKQT 228
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
I L H KGIG HAK+SPVATA YR++P I +L + DAEK P V ++ +
Sbjct: 229 INLSMHMHKGIGADHAKFSPVATASYRLMPVIKILRPIVGADAEKFQACFPSGVIGLQKV 288
Query: 307 -------GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES 353
GS G+ RA V P T+ RECLR E+E +V + R +DHFIF+IES
Sbjct: 289 TKKDATPGSGLEKAVGQMRAVVEDPMRDTVSRECLRH-PEFEGKVKLGRRRDHFIFSIES 347
Query: 354 TGALSPETLFTEAVKILEDKCERV 377
TG + LF E+VK L+ KC+R+
Sbjct: 348 TGQWDSDELFLESVKHLKMKCQRL 371
>gi|221056596|ref|XP_002259436.1| DNA-diDNA-directed RNA polymerase I [Plasmodium knowlesi strain H]
gi|193809507|emb|CAQ40209.1| DNA-diDNA-directed RNA polymerase I, putative [Plasmodium knowlesi
strain H]
Length = 333
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 126/349 (36%), Positives = 183/349 (52%), Gaps = 40/349 (11%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
++F+ V+ + P + + G+Y ++ ++ F N +++ + ++ + +
Sbjct: 4 VKFRDNFVKLKEEGPRNATTTNFYGSYFLSENEHMFDINEFEKNLEMKMHKNEENLLILE 63
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ ++ +IANA RRI++AE+PT+AIEKV I NT +I DE+L HRLGLIP D L +
Sbjct: 64 VKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTGIIADEILCHRLGLIPFKFDADLINF 123
Query: 152 MSENDTSNEKNTIVFKLHV-LCERGGPRLT---VKTNELKWLPNGSELPLETKPDSNPSS 207
E + N N FKLHV ++ G T + + +LKW P N
Sbjct: 124 KEEYEKYNHLNCFCFKLHVKFTKKAGSSETSQSIYSRDLKWCP------------INEQQ 171
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K R F NP + + D I I +L GQEIEL KGIGKTHAKWSP
Sbjct: 172 KLR--------------FQKNPPKVVDDNILITKLANGQEIELICFLEKGIGKTHAKWSP 217
Query: 267 VATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
V TA Y+M P E+ E+ LV CP NVFD+ED + P C+ C
Sbjct: 218 VCTAVYKMYPSFSFNTCENFTKEEKNDLVNICPRNVFDVEDSDT----LVAKNPLNCSSC 273
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
R C+ E++ K++S +VK+HFIFTIESTG S +F +A+ IL+DK
Sbjct: 274 RVCI---EKYPKKISFEKVKNHFIFTIESTGCFSSADIFRKALLILKDK 319
>gi|429328059|gb|AFZ79819.1| DNA-directed RNA polymerase I, putative [Babesia equi]
Length = 315
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 182/315 (57%), Gaps = 42/315 (13%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N ++ I+ TK + G++ +IANA RRILIAE+PT+AIE V I NT V+QDE+LA
Sbjct: 33 NVKIRFIKNTKFHSVVEFEGLNVSIANALRRILIAEIPTLAIETVEIRQNTGVVQDELLA 92
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCER----GGPRLTVKTNELKWLP 190
HRLGL+P VDP F Y +++ +KN++ FKL C R G L++ +L W P
Sbjct: 93 HRLGLVPFNVDPEDFSY-KNHESLGDKNSLCFKLSAKCLRSDSQGRNTLSLYAKDLVWHP 151
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIEL 249
F+ +Q L +F ++P RP+ DI + +L GQE++L
Sbjct: 152 ------------------------FNEAQKL--KFQDDPPRPIHGDILLTKLAGGQELDL 185
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDAEKLVKTCPVNVFDIEDIG 307
A+ KGIGKTH+KWSPV+TA YR PEI E+ + D E+L + CP++VF ++
Sbjct: 186 TAYLEKGIGKTHSKWSPVSTAVYRFKPEITFSEEFPLSKSDKEELCELCPMDVFSMK--- 242
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
K + +CT CR C+ E + K V ++++ +H IF+IESTGA+ TL A+
Sbjct: 243 --KGDICIEDTLSCTSCRACV---ERFPKSVIVKKLNNHIIFSIESTGAVPSATLLLRAI 297
Query: 368 KILEDKCERVITELS 382
++L++K R++ +S
Sbjct: 298 EVLKNKSIRLMNRIS 312
>gi|7505021|pir||T34006 hypothetical protein H43I07.2 - Caenorhabditis elegans
Length = 697
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 183/334 (54%), Gaps = 42/334 (12%)
Query: 64 DNSLQLD--HFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
D++ Q D +C+ +V ++ + D M EFD+ I+A IANA RR+LIAE+PTMA+EK+
Sbjct: 371 DDTKQFDINEYCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKI 430
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNT-------------IV 165
+ NTSVIQDEVL HRLGL+P+ VDPR F++ E NEK ++
Sbjct: 431 YLYQNTSVIQDEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLI 490
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS---NPSSKPRTYTSFSSSQDLL 222
FK++V C + N + +P T P N S R + + D
Sbjct: 491 FKINVSCTK----------------NRNAVPTATDPKQLYHNSSVYSRAF-EWVPIADQK 533
Query: 223 PEFSNNPIRPML--DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+F+ M+ DI +A+L PGQEIE HAVKGIG+ HAK+SPVATA YR+LP I L
Sbjct: 534 TQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRL 593
Query: 281 LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSI 340
++ E AE+L V IE G+ K+ A V R T R R E+ K V +
Sbjct: 594 NAEISGEAAERLKSVFSEGVIAIEKKGA-KRIAVVKDARKDTCSRNVFR-HEDLSKVVQL 651
Query: 341 RRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
+ K HFIF++ESTGAL L EA K++E KC
Sbjct: 652 GKNKQHFIFSVESTGALKSSELVVEACKVMEIKC 685
>gi|340501661|gb|EGR28416.1| polymerase i polypeptide 30kda, putative [Ichthyophthirius
multifiliis]
Length = 330
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 172/305 (56%), Gaps = 31/305 (10%)
Query: 50 ENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIA 109
+ + YS A+ S Q + F +N ++E++ + +EF L G+DA IANA RRI+IA
Sbjct: 13 QEINYSAAFISQD-----QFNTFVDNIKIEILNSKPEQIEFQLQGVDAPIANALRRIMIA 67
Query: 110 ELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLH 169
E+PTMAI KV I NTS+I DEVLAHRLGL+PI DPRLFE ++ NE N+I F +
Sbjct: 68 EVPTMAIHKVYIYQNTSIIPDEVLAHRLGLLPIQADPRLFEEKEDDAEYNENNSIKFSIK 127
Query: 170 VLCERGGPRLTVKTNEL------KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP 223
V C++ +L K+L N + K + + K R
Sbjct: 128 VKCQKKQTYNNHSQKDLENLDPEKYLENAIVYSGQFKWEPIGNQKER------------- 174
Query: 224 EFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE 282
F N I+ + D I +A+L QEI E KG+GK HAKWSPV TA+YR++P I +LE
Sbjct: 175 -FKENIIKIVHDNIIVAKLRENQEIIAEVICQKGMGKNHAKWSPVCTAYYRLMPSIKILE 233
Query: 283 DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRR 342
++ + A++L + CP V+D+ + +A V CT+CREC+R EE +++ + +
Sbjct: 234 PIQGKKAQQLKEKCPAKVYDVIN-----NQAKVVNEIECTMCRECIREDEELNQKLQLGK 288
Query: 343 VKDHF 347
+D+F
Sbjct: 289 EQDNF 293
>gi|367019632|ref|XP_003659101.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
gi|347006368|gb|AEO53856.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
Length = 374
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 200/382 (52%), Gaps = 51/382 (13%)
Query: 24 VPQKLPPHIEFQRTRVQCNLDAPIHTENVM------YSGAYASMGVDNSLQLDHFCNNFR 77
+P K P E +R ++ IH E V Y G Y G D+S ++ F FR
Sbjct: 1 MPHKPPTEEELERRKI-----VGIHEETVTNVSSTDYPGHYP--GEDHSWDIEAFRRGFR 53
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE + + F LIGIDA+IANAFRRI+IA++PT+AIE V + NNTSVIQDEVLAHRL
Sbjct: 54 VEFHKNDPFEASFSLIGIDASIANAFRRIMIADIPTLAIETVFVNNNTSVIQDEVLAHRL 113
Query: 138 GLIPIIVDPR-LFEYM----------SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
GLIP + L +++ N++ + NT+ +L V CE +T+
Sbjct: 114 GLIPFKGGHKGLHKFLKFWRRPDDESQVNNSYYDYNTVSLRLEVKCEHNENAAPGETDPT 173
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
K + + + P + T + S D + P+ P DI IA+L PGQE
Sbjct: 174 KLYKHAHVYARDI--EFCPVGRQ---TKYFSGDDAIA-----PVNP--DILIAKLRPGQE 221
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
I L H KG+G HAK+SPVATA YR++P I + + DAEK + P V +E +
Sbjct: 222 ISLTMHMHKGVGSDHAKFSPVATASYRLMPVIKIERPILGADAEKFARCFPRGVIALEKV 281
Query: 307 --------GSGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
GSG + +A VA P T+ RECLR +E++ +V + R +DHFI+ +E
Sbjct: 282 TKEEAAQKGSGYEGHEGELKAVVADPMRDTVSRECLRH-DEFKGKVKLGRRRDHFIYLVE 340
Query: 353 STGALSPETLFTEAVKILEDKC 374
STG + +F EAV L+ +
Sbjct: 341 STGQWKSDFIFLEAVAHLKKRA 362
>gi|336372326|gb|EGO00665.1| hypothetical protein SERLA73DRAFT_178536 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385070|gb|EGO26217.1| hypothetical protein SERLADRAFT_447454 [Serpula lacrymans var.
lacrymans S7.9]
Length = 363
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 185/318 (58%), Gaps = 20/318 (6%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D+S LD F +V+V RL+ +EFDL+G DA+IANAFRRILIAE+PT+++E+V + +
Sbjct: 40 DHSWDLDQFNQRLKVKVQRLSGRSIEFDLVGTDASIANAFRRILIAEVPTISVERVYVWD 99
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVK 182
NTSV+ DE+LA R+GL+P+ VDP + + ND + ++NT+VF+L V CER
Sbjct: 100 NTSVVVDEILAQRIGLVPLNVDPAWMDTKETTNDQATDRNTLVFRLKVACERN------- 152
Query: 183 TNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARL 241
K P GS P E +S+ S ++ + + F+++P P +I + +L
Sbjct: 153 ----KNAPKGSTDPREMYINSDVLS---SHLEWEPQGEQATVFASSPPAPTNPNIVLGKL 205
Query: 242 GPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED--VEDEDAEKLVKTCPVN 299
PGQEI++E HAVKG+GK HAK+ PVATA YR+LP ++L + V AEK K
Sbjct: 206 RPGQEIDIEMHAVKGVGKDHAKFCPVATASYRLLPLVILNPEKPVPPHLAEKFQKCFSPG 265
Query: 300 VFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSP 359
V + D + R ++ RE R E+E + RV+DHF+F+IES G P
Sbjct: 266 VIRV-DPQTKAISLDEQNMRKESMSREVYR-HPEFEGCTQLARVRDHFLFSIESEGFYPP 323
Query: 360 ETLFTEAVKILEDKCERV 377
E L E++ ++ K +
Sbjct: 324 ERLLPESISVMRGKIANI 341
>gi|406606450|emb|CCH42224.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 295
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 123/285 (43%), Positives = 167/285 (58%), Gaps = 26/285 (9%)
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY---- 151
D +I+NAFRRI+I+E+P++A E+V I NNTSVIQDEVLAHR+GLIP+ +DP L +
Sbjct: 23 DTSISNAFRRIMISEVPSVAAEQVYIFNNTSVIQDEVLAHRIGLIPLKIDPDLLNWVDNS 82
Query: 152 MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRT 211
+ E+D + NT+V L V C + PN + + K SS
Sbjct: 83 VDESDKFTDANTVVMTLDVSCTKN--------------PNAPKNSTDPKELYRNSSIYAR 128
Query: 212 YTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
F + L F NPI P DI +A+L PGQEI L H V GIG HAK+SPV+TA
Sbjct: 129 DLKFEPQGNQLENFK-NPIEPADPDILLAKLRPGQEISLRIHCVLGIGSDHAKFSPVSTA 187
Query: 271 WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
YR+LP I ++E + +DA+K K P V IG A V R T+ RE LR
Sbjct: 188 SYRLLPTIDIIEPIRGDDAKKFQKCFPTGV-----IGINNGEAFVKDSRRDTVSREVLR- 241
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
EE+ +V + R ++HFIF +ESTGA+SPE +F ++V+IL++K E
Sbjct: 242 HEEFNGKVKLGRKRNHFIFNVESTGAMSPEEIFFKSVRILKNKAE 286
>gi|85119573|ref|XP_965664.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
gi|28927476|gb|EAA36428.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
Length = 378
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 35/361 (9%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G Y G D+S ++ F + RV + + +F LIG
Sbjct: 24 KRNTVHINAETVTNVTSTDFPGFYP--GEDHSWDIEKFRESVRVVFHQNDPYEAQFSLIG 81
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP----RLFE 150
+DA+IANAFRRI+IA++PT+AIE + + NNTSVIQDEVL HRLGLIP +
Sbjct: 82 VDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLK 141
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ + +T + NT+ +L V CE NE P S+ P E +++ +K
Sbjct: 142 WYKKGETPCDYNTVELELKVKCE---------NNES--APADSKDPKELYHNAHVYAKDI 190
Query: 211 TYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
+ N IRP DI +A++ PGQEI+L H KG+G HAK+SPVAT
Sbjct: 191 KFVPKGRQAKYFS--GENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVAT 248
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GSGKK------RATV 315
A YR++P I +LE + DAEK K P V +E + GSG + +A V
Sbjct: 249 ASYRLMPTITILEPILGRDAEKFQKCFPEGVIGLEKVTKEEAKKKGSGYEGHEGELKAVV 308
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
T+ RECLR +E++ +V + R +DHFI+ +ESTG + +F E++ L++K +
Sbjct: 309 LDAMRDTVSRECLRH-DEFKDKVKLGRRRDHFIYLVESTGQWESDAIFLESIAHLKEKAK 367
Query: 376 R 376
R
Sbjct: 368 R 368
>gi|219121193|ref|XP_002185825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582674|gb|ACI65295.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 319
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 182/314 (57%), Gaps = 30/314 (9%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
R ++ ++ + + +D + NA RRIL+AE+PT+A+E + + N+S+I DEVL+HRLGLIP
Sbjct: 6 RPSEHELVLEFLHVDTSFVNALRRILLAEVPTVALENIYMWENSSLIHDEVLSHRLGLIP 65
Query: 142 IIVDPRLFEYMSENDTS-NEKNTIVFKLHVLC----ERGGPRLTVKTNELKWLPNGSELP 196
+ +D RL + ++D S ++NT+VF+L V C +G + ++E N ++
Sbjct: 66 LKIDARLLDEQDDDDPSPTDRNTVVFRLGVSCGSDPNKGKAKHKADSHE-----NANDAA 120
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLL--PEFSN----NPIRPMLD-ITIARLGPGQEIEL 249
E D P YT S+DL+ P+ I M D I IA+L PGQ IEL
Sbjct: 121 -EADQDERP------YTKHVYSKDLVWVPQGDQEERLQDICAMHDDILIAKLRPGQSIEL 173
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI-----E 304
E H G+GK HAK+SPVATA YR++P I LL DV DE A++LV VF+I
Sbjct: 174 EVHGRVGVGKDHAKFSPVATASYRLMPHIELLRDVYDEVADELVHVYEPGVFEIVPTDAT 233
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
D ++A V P ACT+ R +R E + V + R+ DHFIF++ES G +P L
Sbjct: 234 DPAGTSRKARVCNPYACTMSRNYMR-HTELAQAVRMSRIPDHFIFSVESVGMYAPGVLVA 292
Query: 365 EAVKILEDKCERVI 378
EA++IL+ KC +V+
Sbjct: 293 EALRILQRKCRKVM 306
>gi|116180930|ref|XP_001220314.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
gi|88185390|gb|EAQ92858.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
Length = 374
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 133/339 (39%), Positives = 188/339 (55%), Gaps = 38/339 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D+S ++ F FRVE + + F LIGIDA+IANAFRRI+IA++PT+AIE V I
Sbjct: 38 GEDHSWDIESFRRGFRVEFHQNDPYEASFSLIGIDASIANAFRRIMIADIPTLAIETVFI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPR-LFEYM---------SE-NDTSNEKNTIVFKLHV 170
NNTSVIQDEVL+HRLGLIP L +++ SE N++ + NT+ +L V
Sbjct: 98 NNNTSVIQDEVLSHRLGLIPFKGGHEGLHKFLKWWRKPTDESEINNSYYDNNTVSLRLEV 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
CE +T+ K N + + P + Y FS + + P NP
Sbjct: 158 QCEHNEKAAAGETDPTKLYKNAHVYARDI--EFCPVGRQDKY--FSGADAIAPV---NP- 209
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI IA+L PGQEI L H KG+G H+K+SPVATA YR++P I + + +DAE
Sbjct: 210 ----DILIAKLRPGQEISLSMHMHKGVGSDHSKFSPVATASYRLMPVISIERPILGKDAE 265
Query: 291 KLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACTLCRECLRCGEEWEK 336
K ++ P V +E + GS G+ +A VA P T+ RECLR EE++
Sbjct: 266 KFMRCFPPGVIKLEKVTKKEAAKKGSGYEGHEGEDKAVVADPMRDTVSRECLRH-EEFKG 324
Query: 337 RVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
+V + R +DHFI+ +ESTG + +F E+V L+ + +
Sbjct: 325 KVKLGRRRDHFIYLVESTGQWESDAIFLESVAHLKKRAQ 363
>gi|302655859|ref|XP_003019711.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
gi|291183453|gb|EFE39066.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
Length = 388
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 185/331 (55%), Gaps = 53/331 (16%)
Query: 81 IRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
I K+D F LIG+DAAIANAFRRIL+AE+P +AIE V I NNTSVIQDEVLAHRL
Sbjct: 62 IEFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAHRL 121
Query: 138 GLIPI------IVDPRLFEYMSEND-----TSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
GLIP+ + R F+ E D T + NTIV +L C +
Sbjct: 122 GLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTK------------ 169
Query: 187 KWLPNGSELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIAR 240
N + P E P +++ +K + + + I+P DI +A+
Sbjct: 170 ----NRNAAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYF--HGDGVIQPCNPDILLAK 223
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
L PGQ+I++E H +KGIG HAK+SPVATA YR+LP+I +L + DA K P V
Sbjct: 224 LRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIKFASCFPRGV 283
Query: 301 FDIED--------IGS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
IE+ +GS G+K+A V P T+ RECLR +E++ +V + RV+DH
Sbjct: 284 IGIENVTAAEAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLR-HDEFKDKVKLGRVRDH 342
Query: 347 FIFTIESTGALSPETLFTEAVKILEDKCERV 377
FIF IESTG + + +F E++K+L+ KC+R+
Sbjct: 343 FIFNIESTGQFNSDLMFLESIKVLKLKCQRL 373
>gi|365982085|ref|XP_003667876.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
gi|343766642|emb|CCD22633.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
Length = 335
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 52/337 (15%)
Query: 57 AYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAI 116
++S G N+ ++ F F V++ L++ + FDLI ID ++ANAFRRI+I+E+P++A
Sbjct: 22 GFSSDG-SNAWDVEKFKETFDVQITSLSEREANFDLINIDTSMANAFRRIMISEVPSVAA 80
Query: 117 EKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKLHVLC 172
E V NTSVIQDEVLAHR+G+IP+ VDP + + +SE + + NT+V L++ C
Sbjct: 81 EYVYFLTNTSVIQDEVLAHRIGMIPLKVDPDMLSWIDTSLSEEEKFTDDNTVVMSLNIKC 140
Query: 173 ERG--------GPRL-----TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
R P++ +V +LK+ P G + +ET
Sbjct: 141 TRNLNAPKDCTDPKILYHNSSVYAKDLKFEPQGKQ--VET-------------------- 178
Query: 220 DLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
F+ P+ P DI +A+L P QEI L H + G+G HAK+SPV+TA YR+LP I
Sbjct: 179 -----FAKCPVVPSDPDILLAKLRPDQEISLRVHCILGVGGDHAKFSPVSTASYRLLPHI 233
Query: 279 VLLEDVEDEDAEKLVKTCPVNVFDI-EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKR 337
+L+ + E A K K V I E+ G A V R T+ RE LR EE+ +
Sbjct: 234 NILKPITGEQAIKFQKCFLPGVIGINEETG----EAYVKDARKDTVSREVLR-HEEFNDK 288
Query: 338 VSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
V + R++DHFIF +ESTGA++PE +F ++V+IL++K
Sbjct: 289 VKLGRIRDHFIFNVESTGAMTPEEIFFKSVRILKNKA 325
>gi|430813139|emb|CCJ29483.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 578
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/299 (41%), Positives = 169/299 (56%), Gaps = 61/299 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
MEFDLIGID +I NAFRRILIAE+PT+AIE V + NNTS+IQDE+LA RLGLIPI +P
Sbjct: 1 MEFDLIGIDCSIVNAFRRILIAEIPTIAIEYVFVNNNTSIIQDEILAQRLGLIPIKANPD 60
Query: 148 LFEYMSEN--------------DTSNE-----KNTIVFKLHVLC---------ERGGPRL 179
F + + N D + E +T+V L V C ER +L
Sbjct: 61 FFTWFTSNYFPIFFFILNIKEPDANQEPRPTDYDTVVLSLKVACTKNPKASENERDPEKL 120
Query: 180 TVKTN----ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD 235
+ +N +++W P G ++ L F ++PI+ + D
Sbjct: 121 YINSNVYSGDIQWQPAGRQIEL---------------------------FKDDPIKAVHD 153
Query: 236 -ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK 294
I IA+L PGQEI++ H + GIG+ HAK+SPV+T+ YR+LP I +LE + D+DAEK
Sbjct: 154 KILIAKLRPGQEIDVTMHCILGIGQDHAKFSPVSTSSYRLLPTIHILEPIYDDDAEKFAL 213
Query: 295 TCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES 353
V DI +K A VA PR T+ RECLR +E++ +V + RV+DHFIF+IE+
Sbjct: 214 CFSKGVIDIVLDEQNRKVAKVANPRNDTVSRECLR-HDEFKDKVKLGRVRDHFIFSIEN 271
>gi|452836262|gb|EME38206.1| hypothetical protein DOTSEDRAFT_57363 [Dothistroma septosporum
NZE10]
Length = 393
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 196/375 (52%), Gaps = 46/375 (12%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R V N + +T + G Y D+ L+ F N +VE D F L+G+
Sbjct: 15 RRVVNVNAETVTNTASTDIPGHYGPKQ-DDDWHLERFKQNLKVEFHHNKPFDSVFSLVGV 73
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYM--- 152
D++IANA+RRIL+AELPT++IE V +NTS+IQDEVLAHRLGLIP+ + M
Sbjct: 74 DSSIANAYRRILLAELPTLSIEDVYFFDNTSIIQDEVLAHRLGLIPLTGSRKGLREMRWF 133
Query: 153 -------------------------SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
++ND N+ NT+V L V C R + +
Sbjct: 134 KKPPPKDDFAARAQWDADRAEGRVETDNDAPNDFNTVVLSLQVEC-RWKTVDEDGVDGRQ 192
Query: 188 WLPNGSELPLETKPDSNPSSKPRTY-------TSFSSSQDLLPEFSNNPIRPMLDITIAR 240
+G P E +SN + + T + S ++++ P+ P DI IA+
Sbjct: 193 LAKDGETDPKEKYANSNVYAHQIQFEPQGDRQTGWFSGEEII-----RPVNP--DILIAK 245
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
L PGQ I + HA+KGIG HAK+SPVATA YR+LP+I + + + +DA+ P V
Sbjct: 246 LRPGQRINVRMHAIKGIGADHAKFSPVATASYRLLPDIKITQPIVGKDAKTFQHCFPRGV 305
Query: 301 FDIEDI-GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSP 359
+ED SG+K+A V P T+ RE LR +E++ +V + R++DHFIF++ES G
Sbjct: 306 IKLEDDPESGEKKAVVDDPFKDTVSREVLRH-DEFKGKVKLGRIRDHFIFSVESAGQFES 364
Query: 360 ETLFTEAVKILEDKC 374
+ LF ++V++L+ K
Sbjct: 365 DELFIDSVRLLKKKA 379
>gi|350297001|gb|EGZ77978.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2509]
Length = 378
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 193/361 (53%), Gaps = 35/361 (9%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G Y G D+S ++ F + R + + +F LIG
Sbjct: 24 KRNTVHINAETVTNVTSTDFPGFYP--GEDHSWDIEKFRESVRAVFHQNDPYEAQFSLIG 81
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP----RLFE 150
+DA+IANAFRRI+IA++PT+AIE + + NNTSVIQDEVL HRLGLIP +
Sbjct: 82 VDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLK 141
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ + +T + NT+ +L V CE NE P S+ P E +++ +K
Sbjct: 142 WYKKGETPCDYNTVELELKVKCE---------NNES--APADSKDPKELYHNAHVYAKDI 190
Query: 211 TYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
+ N IRP DI +A++ PGQEI+L H KG+G HAK+SPVAT
Sbjct: 191 KFVPKGRQAKYFS--GENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVAT 248
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GSGKK------RATV 315
A YR++P I +LE + DAEK K P V +E + GSG + +A V
Sbjct: 249 ASYRLMPTITILEPILGRDAEKFQKCFPEGVIGLEKVTKEEAKKKGSGYEGHEGELKAVV 308
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
T+ RECLR +E++ +V + R +DHFI+ +ESTG + +F E++ L++K +
Sbjct: 309 LDAMRDTVSRECLRH-DEFKDKVKLGRRRDHFIYLVESTGQWESDAIFLESIAHLKEKAK 367
Query: 376 R 376
R
Sbjct: 368 R 368
>gi|302511159|ref|XP_003017531.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
gi|291181102|gb|EFE36886.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
Length = 362
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 180/322 (55%), Gaps = 50/322 (15%)
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
+ F LIG+DAAIANAFRRIL+AE+P +AIE V I NNTSVIQDEVLAHRLGLIP+
Sbjct: 45 EASFSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSL 104
Query: 147 ------RLFEYMSEND-----TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R F+ E D T + NTIV +L C + N +
Sbjct: 105 EGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTK----------------NRNSA 148
Query: 196 PLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIEL 249
P E P +++ +K + + + I+P D +A+L PGQ+I++
Sbjct: 149 PDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYF--HGDGVIQPCNPDTLLAKLRPGQKIDI 206
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED---- 305
E H +KGIG HAK+SPVATA YR+LP+I +L + DA K P V IE+
Sbjct: 207 EMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIKFASCFPRGVIGIENVTAA 266
Query: 306 ----IGS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTG 355
+GS G+K+A V P T+ RECLR +E++ +V + RV+DHFIF IESTG
Sbjct: 267 EAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLR-HDEFKDKVKLGRVRDHFIFNIESTG 325
Query: 356 ALSPETLFTEAVKILEDKCERV 377
+ + +F E++K+L+ KC+R+
Sbjct: 326 QFNSDLMFLESIKVLKLKCQRL 347
>gi|353241596|emb|CCA73401.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Piriformospora indica DSM 11827]
Length = 382
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 188/357 (52%), Gaps = 59/357 (16%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
Y G Y DNS L F + ++E + ++ +EFDL+GID +IANAFRRI+I+E+PT
Sbjct: 29 YPGVYPDE--DNSWDLVDFKKHVKLEFQYVEEERIEFDLVGIDTSIANAFRRIIISEVPT 86
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN--DTSNEKNTIVFKLHVL 171
+AIE+V + +NTSVIQDEVL+HRLGLIP+ +DPR+ E +N D S ++NT+VF L V
Sbjct: 87 VAIERVYVYDNTSVIQDEVLSHRLGLIPLRIDPRMLEDAPQNYQDDSTDRNTMVFSLDVT 146
Query: 172 C-ERGGPR------------LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS 218
C +R G R +V +L+W+P G + T F+S
Sbjct: 147 CADRDGVRPGTTDPEKLYINSSVYAKDLQWVPQGEQ-----------------ETIFASD 189
Query: 219 QDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
P + NP +I IA+L P Q I LE HAVK IG+ H K+SPV TA+YR++P I
Sbjct: 190 ----PPRAANP-----NILIAKLRPEQSIHLEMHAVKSIGRDHTKFSPVGTAFYRLMPHI 240
Query: 279 VLLE-----DVEDEDAEKLVKTCPVNVFDIEDIGS----------GKKRATVAQPRACTL 323
LL+ D E +KL +D S GK V PR +
Sbjct: 241 QLLKPGDRYDEESRKVDKLEMADQEQAKRFQDAFSEGVIEVKKERGKYYVRVKAPRRDNV 300
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
R L E++ V + RV+D FI+TIESTG +F A+ + + K + E
Sbjct: 301 TRRILEL-REFDGMVRLGRVRDWFIYTIESTGQYPAVDIFPVALGVFKSKIRTLKAE 356
>gi|171696332|ref|XP_001913090.1| hypothetical protein [Podospora anserina S mat+]
gi|170948408|emb|CAP60572.1| unnamed protein product [Podospora anserina S mat+]
Length = 372
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 51/388 (13%)
Query: 24 VPQKLPPHIEFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIR 82
+P K P E ++ + V NL+ + + G Y G D++ ++ F F VE +
Sbjct: 1 MPHKPPTQEELEKRKIVGVNLETVTDVSSTDFPGHYP--GEDHAWDIERFKRGFSVEFHQ 58
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ F LIGIDA+IANAFRRI+IA++PT+AIE V + NNTSVIQDEVLAHRLGLIP
Sbjct: 59 NDPHEASFSLIGIDASIANAFRRIMIADVPTLAIENVFVWNNTSVIQDEVLAHRLGLIPF 118
Query: 143 IVDP-------RLFEYMSENDTSNEK--NTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+ + + D + K NT+ +L+V CE N +
Sbjct: 119 TGGREGLTDFLKWYRKPANGDPAECKDFNTVALELNVKCEH----------------NEN 162
Query: 194 ELPLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEI 247
P ET P ++ +K + D + IRP+ DI IA+L PGQEI
Sbjct: 163 ADPNETDPTKLYHHAHVYAKDIVFKPIGRQVDYFS--GEDIIRPVNPDILIAKLRPGQEI 220
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI- 306
++ H KG+G HAK+SPVATA YR++P I + + + DAEK + P V +E +
Sbjct: 221 NVQMHMHKGVGSDHAKFSPVATASYRIMPTITITQPILGRDAEKFQRCFPKGVIGLEKVT 280
Query: 307 -------GSGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES 353
GSG + +A V P++ T+ RE LR EE++ +V + R +DHFI+ +ES
Sbjct: 281 AEEAAQKGSGYEGHEGELKAVVVDPKSDTVSREALRH-EEFKDKVKLGRRRDHFIYLVES 339
Query: 354 TGALSPETLFTEAVKILEDKCERVITEL 381
TG + +F E+V L+ K + + +L
Sbjct: 340 TGQWKSDAIFLESVSHLKAKAKALEKQL 367
>gi|402582559|gb|EJW76504.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 299
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 169/314 (53%), Gaps = 59/314 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFDL+G++A IANA RR+LIAELPT+AIEKV + NTS+I DEVL+HR GL+PI DPR
Sbjct: 3 LEFDLVGVEAPIANAIRRVLIAELPTLAIEKVYLYQNTSIIPDEVLSHRFGLLPIKADPR 62
Query: 148 LFEY--------------MSENDTSNEKNTIVFKLHVLCERGGPRLT------------- 180
LF+ +E + ++F++ V C R L
Sbjct: 63 LFKMPLTPVIGIDESGVDCNEEPAGDPTRNLIFEIKVTCSRNPNALKTATNPKEIYENAF 122
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIAR 240
V +N KW+P G + S+S P ++ DI +A+
Sbjct: 123 VYSNSFKWIPIGDQ---------------------STSLPYPPAMVHD------DILVAQ 155
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
L PGQEIE H +KG+G+ HAK+SPVATA YR+LP+IVL DA+++ + V
Sbjct: 156 LRPGQEIEARCHCLKGLGRDHAKFSPVATASYRLLPQIVLKRKFSGADAQRIKSSFSEGV 215
Query: 301 FDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
+I+ G A V R+ T R LR E+ + + + R+KDHFIF++ESTGAL
Sbjct: 216 IEIDADGV----AIVKDARSDTCSRNILR-HEDLAEYIELSRIKDHFIFSVESTGALKSA 270
Query: 361 TLFTEAVKILEDKC 374
L EA K++E+KC
Sbjct: 271 ELVVEACKVMEEKC 284
>gi|403222412|dbj|BAM40544.1| DNA-directed RNA polymerases I and III subunit [Theileria
orientalis strain Shintoku]
Length = 305
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 171/290 (58%), Gaps = 42/290 (14%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
+ RV ++ T+ ++ G+D + ANA RRIL++E+PT+A+E V I NT VIQDE+LA
Sbjct: 34 SLRVNFLKKTESHSIVEIEGLDVSFANALRRILLSEVPTLAVETVQIYQNTGVIQDELLA 93
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPR----LTVKTNELKWLP 190
HRLGLIP V+P LF + + + N+KN++ FKL V +R P L V ++ LKW+P
Sbjct: 94 HRLGLIPFNVNPDLFTFKNCEEI-NDKNSVCFKLKVKYDRNEPNSGNYLPVYSSFLKWVP 152
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIEL 249
SS+Q+ F NNP +P+ D I I +L PGQEI+L
Sbjct: 153 ------------------------LSSNQE--ATFKNNPPKPVHDNILITKLAPGQEIDL 186
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK--LVKTCPVNVFDIEDIG 307
+ KG GK HAKWSPV+TA+Y+ +P I + + + D+EK L CP++VF I++
Sbjct: 187 NVYLEKGTGKVHAKWSPVSTAFYKFMPSIKINDTPKLSDSEKRDLATICPMDVFSIKN-- 244
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
+V P CT CR+CL E + K V+I ++ +H IF+IESTG++
Sbjct: 245 ---SEISVENPLNCTSCRKCL---ETYPKHVTISKLVNHIIFSIESTGSI 288
>gi|158293560|ref|XP_314897.4| AGAP008771-PA [Anopheles gambiae str. PEST]
gi|157016767|gb|EAA10097.5| AGAP008771-PA [Anopheles gambiae str. PEST]
Length = 261
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 169/316 (53%), Gaps = 70/316 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F ++ V+R ++++EFD+IG+ AIAN FRR++++E+P+MAIEKV I NNTS+IQDE
Sbjct: 2 FKRKLQIVVVRYDENELEFDMIGVSCAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQDE 61
Query: 132 VLAHRLGLIPIIVDPRLFEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTN------ 184
VLAHRLGLIP+ DPR+FEY +E D + +T+ F+L V C R T TN
Sbjct: 62 VLAHRLGLIPLRADPRMFEYKANETDPPSALDTLEFELKVKCTRKNKDSTEVTNNENMYK 121
Query: 185 -------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT 237
++KW+P G++ + T+ P DI
Sbjct: 122 NHSIYSGQIKWVPIGNQATIYTEAAVGPIDD--------------------------DIL 155
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP 297
I+++ PG E +++ AVKG+GK HAK+SPVAT YR+LP+I L +DA +C
Sbjct: 156 ISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKLNRPAYVKDAR--YDSCS 213
Query: 298 VNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
NV+ + V+I RV++HFIFT+ES GAL
Sbjct: 214 RNVYRYPQLADA----------------------------VTIARVRNHFIFTVESLGAL 245
Query: 358 SPETLFTEAVKILEDK 373
PE +F EA K+L+ K
Sbjct: 246 KPEVIFVEAAKVLKKK 261
>gi|50553838|ref|XP_504330.1| YALI0E23947p [Yarrowia lipolytica]
gi|49650199|emb|CAG79929.1| YALI0E23947p [Yarrowia lipolytica CLIB122]
Length = 339
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 187/330 (56%), Gaps = 35/330 (10%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D++ LD F N +V++ LT + FDLIGID ++ANAFRRI+IA++PT+A+E+V I
Sbjct: 31 GADDAWDLDKFDKNLQVKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFI 90
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVD-------PRLFEYMSENDTSNEKNTIVFKLHVLCER 174
NTS+IQDEVLAHRLGL+P++++ PR + D ++ NT V +L+V CER
Sbjct: 91 HANTSIIQDEVLAHRLGLVPLVINPERINALPRGLDASEIEDYYDDSNTFVLRLNVTCER 150
Query: 175 GGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS-QDLLPEFSNNPIR-P 232
L +G T +++ ++ T+ + Q + E N +
Sbjct: 151 --------------LADG------TMKNAHIYARDITFDPMGNQCQWVKDEGLENVFKVA 190
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
DI IA+L P Q I L G G HAK+SPVATA YR++P I + D+ ++A+K
Sbjct: 191 NPDILIAKLRPNQSINLTMFCHLGFGHDHAKFSPVATASYRLMPTITITGDITGDEAKKF 250
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
K P V ++E GK VA R T+ RE LR EE+ +V + R +DHFIF +E
Sbjct: 251 QKCFPKGVIELE---GGK--PVVADARKDTVSREVLR-HEEFNGKVKLGRRRDHFIFNVE 304
Query: 353 STGALSPETLFTEAVKILEDKCERVITELS 382
S+GAL P+ +F ++V L+ K + + +S
Sbjct: 305 SSGALEPDEIFLKSVMELQAKAQTLKAAVS 334
>gi|225716742|gb|ACO14217.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 263
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 151/240 (62%), Gaps = 18/240 (7%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ L F NFR++V+++ + MEFD++GIDA+IANAFRRI
Sbjct: 25 VHTTD--YPGNYP--GYDDTWSLQKFQKNFRIDVVQMDETCMEFDMVGIDASIANAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV I NNTS+IQDEVLA RLGLIPI DPRLFEY + D E +TI
Sbjct: 81 LLAEVPTMAVEKVFIYNNTSIIQDEVLAQRLGLIPIKADPRLFEYRNAGDEEGTEIDTIQ 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L + C R S P E + SK T+ + D++ +
Sbjct: 141 LQLKIKCTRN-----------HQATKDSADPQELYLNHMVYSKDMTWVPIGNQADVVADA 189
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+ P+ DI +A+L PGQE+++ H VKGIG+ HAK+SPVATA YR+LPEI L++ VE
Sbjct: 190 NIGPVHG--DILLAKLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMKTVE 247
>gi|367044228|ref|XP_003652494.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
gi|346999756|gb|AEO66158.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
Length = 374
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 181/338 (53%), Gaps = 38/338 (11%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D+S ++ F NFRVE + + F LIG DA+IANAFRRI+IA++PT+AIE V I
Sbjct: 38 GEDHSWDIEAFKRNFRVEFHQNDPFEASFSLIGCDASIANAFRRIMIADIPTLAIETVFI 97
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPR-LFEYMSE----------NDTSNEKNTIVFKLHV 170
NNTSVIQDEVL+HRLGLIP L +++ N++ + NT+ +L V
Sbjct: 98 NNNTSVIQDEVLSHRLGLIPFRGGKEGLHKFLKWWRKPADESQINNSYYDFNTVSLRLEV 157
Query: 171 LCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
CE +T+ K + + + P + Y FS + + P NP
Sbjct: 158 KCEYNEAAAPGETDPTKLYKHAHVYARDI--EFCPVGRQEKY--FSGADAIAPV---NP- 209
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE 290
DI IA+L PGQEI L H KG+G HAK+SPVATA YR+LP I + + DAE
Sbjct: 210 ----DILIAKLRPGQEISLSMHMHKGVGSDHAKFSPVATASYRLLPIIKIERPILGRDAE 265
Query: 291 KLVKTCPVNVFDIEDI--------GSGKK------RATVAQPRACTLCRECLRCGEEWEK 336
K + P V +E + GSG + +A V P T+ RECLR E++
Sbjct: 266 KFARCFPPGVIGLEKVTKKEAAQKGSGYEGHEGELKAVVVDPMRDTVSRECLRH-PEFQG 324
Query: 337 RVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
+V + R KDHFIF +ESTG + +F EAV L+ K
Sbjct: 325 KVKLGRKKDHFIFLVESTGQWESDAIFMEAVAHLKKKA 362
>gi|340924182|gb|EGS19085.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide-like
protein [Chaetomium thermophilum var. thermophilum DSM
1495]
Length = 374
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 198/381 (51%), Gaps = 43/381 (11%)
Query: 24 VPQKLPPHIEFQ-RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIR 82
+P + P E + R V N + + + + YA G D++ L+ F FRVE +
Sbjct: 1 MPHRPPTKEELEARKIVGINEETVTNVNSTDFPHHYA--GEDHAWDLEAFRREFRVEFHQ 58
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ F LIG A+IANAFRRI+IA++PT+AIE V I NNTSVIQDEVLAHRLGLIP
Sbjct: 59 NDPYEASFSLIGCHASIANAFRRIMIADIPTLAIETVFINNNTSVIQDEVLAHRLGLIPF 118
Query: 143 IVDPR-LFEYMSE----------NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
L +++ N++ + NT+ +L V CE +T+ K +
Sbjct: 119 KGGKEGLHKFLKWWKKPADESQINNSYYDFNTVSLRLEVKCEENPDAAPGETDPTKLYKH 178
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELE 250
+ + P + Y S N IRP+ DI IA+L PGQEI L
Sbjct: 179 AHVYARDI--EFCPVGRQHKYFS-----------GENAIRPVNPDILIAKLRPGQEISLS 225
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI---- 306
H KG+G HAK+SPVATA YR+LP I ++E + +DAEK K P V +E +
Sbjct: 226 MHMHKGVGSDHAKFSPVATASYRLLPVIDIIEPILGKDAEKFQKCFPKGVIGLERVTKEE 285
Query: 307 ----GSGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGA 356
GSG + +A V P T+ RECLR E++ +V + R +DHFIF +ESTG
Sbjct: 286 ASRKGSGYEGHEGELKAVVVDPMRDTVSRECLRH-PEFKGKVKLGRRRDHFIFLVESTGQ 344
Query: 357 LSPETLFTEAVKILEDKCERV 377
+ +F EAV L+ + + +
Sbjct: 345 WESDAIFLEAVAHLKKRAKDI 365
>gi|156061627|ref|XP_001596736.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980]
gi|154700360|gb|EDO00099.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 387
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 176/322 (54%), Gaps = 45/322 (13%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-L 148
F L+GIDA++ANAFRRILIAE+PT+AIE + NNTSVIQDEVL RLGL+P L
Sbjct: 76 FSLVGIDASVANAFRRILIAEIPTLAIEYCFVKNNTSVIQDEVLCGRLGLVPFKGGKEGL 135
Query: 149 FEYMS-------------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
++M + S + NTI L + C R K G
Sbjct: 136 LDFMKWFQKPEEETPEEERHLGSFDHNTIQLSLKIECTRN-----------KEAAPGEAD 184
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN-NPIR-PMLDITIARLGPGQEIELEAHA 253
P + +++ +K + F L FS N IR P DI IA++ PGQ I+++ HA
Sbjct: 185 PRKIYHNAHVYAKDIEFKPFGRQ---LEYFSGENAIRSPNPDILIAKMRPGQVIDIDMHA 241
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI------- 306
+KGIG+ HAK+SPVATA YR+LP I + + + +DAEK K P V IE +
Sbjct: 242 IKGIGRDHAKFSPVATASYRLLPVINITQPILGKDAEKFKKCFPPGVIGIEKVTAKEAKI 301
Query: 307 -GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSP 359
GS G+K+A V T+ RECLR EE++ +V + RV+DHFIF+IES G
Sbjct: 302 KGSGYEGHEGEKKAVVVDAMRDTVSRECLR-HEEFQGKVKLGRVRDHFIFSIESLGQWDS 360
Query: 360 ETLFTEAVKILEDKCERVITEL 381
+ LF E++K L KCE T L
Sbjct: 361 DELFLESIKTLRTKCEAFKTSL 382
>gi|440293650|gb|ELP86743.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Entamoeba invadens IP1]
Length = 289
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 178/310 (57%), Gaps = 42/310 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E I T + + FDL +D ++AN+ RRI+++E+PTMAIE V++ NTS I DE+LAHRL
Sbjct: 7 IEFISTTPEKVVFDLTNVDVSVANSLRRIMLSEVPTMAIEMVVMEVNTSCIPDEMLAHRL 66
Query: 138 GLIPIIVDPRLFEYMSEND--TSNEKNTIVFKLHVLC---ERGGPRLTVKTNELKWLPNG 192
GLIPI DPR F++ E+NT+VF + V+ ++ V ++++ W P G
Sbjct: 67 GLIPIYADPRKFQFAPNRAFLEPTEENTLVFHMDVINNTKDKTAVHKNVYSSDIIWEPQG 126
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEA 251
+ ET F +PIR +L DI IA L GQ+I+ +
Sbjct: 127 DQ---ETT------------------------FQKDPIRVVLGDILIAELAQGQQIKCKL 159
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
+ KG+G+ HAK+SPV TA YRM+P+I + + A+++ + CP+NV+DIED
Sbjct: 160 YCCKGLGQDHAKFSPVCTAAYRMMPKIEVT--AVGKMAKEIKECCPLNVYDIED-----N 212
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
V PR C +CREC+R ++ ++ V + R HFIFT+ES G + +F EA+ +L+
Sbjct: 213 ELVVKNPRNCKMCRECIR--DQRQEFVKLGREDSHFIFTVESVGIYQAKEIFEEALSVLK 270
Query: 372 DKCERVITEL 381
K ++ + EL
Sbjct: 271 GKAQKCLEEL 280
>gi|399950006|gb|AFP65662.1| DNA-directed RNA polymerase 40k chain [Chroomonas mesostigmatica
CCMP1168]
Length = 350
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 165/306 (53%), Gaps = 29/306 (9%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ +I +KDD+ G++ NA RRIL++E+ T+ IEKV NTS++ DE+++HRL
Sbjct: 65 ISIIHWSKDDIILKAKGMELCFGNALRRILLSEIATVTIEKVFFYKNTSILNDEIVSHRL 124
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIPI V+ L +++ + +K TI+ KL + N PN S +
Sbjct: 125 GLIPIFVNVDLINFLTI-AKNKKKLTIILKL-------------EANH----PNDSFGNI 166
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKG 256
+S S+ N+PI+P DI +A+L PGQ+I E H V G
Sbjct: 167 AVFSNSLLQKNTGILNSW---------MKNSPIKPAFKDILVAKLNPGQKIIAECHCVLG 217
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG-KKRATV 315
G HAK+SPV T++Y++ P I ++ ++ D+ A + + CPV VFDIED+ S K+ V
Sbjct: 218 TGNIHAKFSPVGTSFYKIFPRIKIISEILDKHAHVIRQKCPVKVFDIEDVNSNFGKKLKV 277
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
+QP CTLCRECL + ++ I R F IESTG SPE LF A+ +L KC
Sbjct: 278 SQPHFCTLCRECLHFPDNVNSKIRIGRSNSKISFIIESTGVSSPEILFHRAIYLLVGKCN 337
Query: 376 RVITEL 381
R + L
Sbjct: 338 RSLHAL 343
>gi|301095579|ref|XP_002896889.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
gi|262108536|gb|EEY66588.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
Length = 304
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 165/308 (53%), Gaps = 78/308 (25%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ LT D++ FDLIG V I NN+S+IQDEVLAHR
Sbjct: 37 KVKIQSLTDDEIVFDLIG-----------------------HVYIWNNSSIIQDEVLAHR 73
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCE---------RGGPRLTVKTNELK 187
LGLIP+ + ++NTIVFKL V C+ +V + +L+
Sbjct: 74 LGLIPL--------------NATDENTIVFKLDVTCKFDPEHPKDPTKAIHSSVYSRDLE 119
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQE 246
W+P G++ E IRP+ DI +A+L PGQ
Sbjct: 120 WVPQGNQ-----------------------------EERFGSIRPVHEDILMAKLRPGQS 150
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
I LEAH KG+GK HAK+SPVATA YR++P++ L+E VE DA++LV+ C + +FDIEDI
Sbjct: 151 IALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEECHIGLFDIEDI 210
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
G G A V RACT+CR C+R W +++ + R DHFIF++ES G + PE L EA
Sbjct: 211 G-GVPTAVVKDQRACTMCRNCIR-EPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEA 268
Query: 367 VKILEDKC 374
+ +L +KC
Sbjct: 269 LNVLAEKC 276
>gi|400602680|gb|EJP70282.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 384
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 190/369 (51%), Gaps = 34/369 (9%)
Query: 33 EFQRTR-VQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
E +R R V N + + ++ Y G G D + ++ F ++F V + + D F
Sbjct: 17 ELERRRTVNINKETVSNISSIEYPGHVP--GEDAAFTIERFQSDFSVHFHQNEQFDASFS 74
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-LFE 150
L+G+DA++ANAFRRI+IAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP L +
Sbjct: 75 LVGLDASLANAFRRIMIAEIPTLAIENVFIENNTSVIQDEVLAHRLGLIPFKGGREGLLD 134
Query: 151 YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK--WLPNGSELPLETKPDSNPSSK 208
++ ++K T GG EL N P ET P +
Sbjct: 135 FLK----WHKKPTDGDDDDNDDSAGGFDFDTVRLELNVTCTANADAAPGETDP-TKAYHH 189
Query: 209 PRTYTS---FSSSQDLLPEFSN----NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
Y FS + FS P+ P DI IA++ P Q I L H KGIG H
Sbjct: 190 AHVYARDIVFSPMGEQERYFSGADAIAPVNP--DILIAKMRPKQTINLSMHMHKGIGSDH 247
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-------GS------ 308
AK+SPVATA YR+LP I +L+ + DAEK P V ++ I GS
Sbjct: 248 AKFSPVATASYRLLPTIKILKPIVGVDAEKFQGCFPQGVIGLQKITKKDAVPGSGLEEHV 307
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
G+ RA V T+ RECLR E+E +V + R +DHFIF++ESTG + LF E+VK
Sbjct: 308 GEMRAVVEDASKDTVSRECLRH-PEFEGKVKLGRRRDHFIFSVESTGQWDSDELFLESVK 366
Query: 369 ILEDKCERV 377
L KC+R+
Sbjct: 367 HLRVKCQRL 375
>gi|357612390|gb|EHJ67960.1| DNA-directed RNA polymerase [Danaus plexippus]
Length = 322
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 177/333 (53%), Gaps = 55/333 (16%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D F FR+ ++R+ +MEFDLIGI A ANAFRR++++E+P+MAIEKV+I N
Sbjct: 28 DEKWNFKKFTKKFRIVIVRMDSTEMEFDLIGIQPAFANAFRRLMLSEVPSMAIEKVMIKN 87
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN-DTSNEKNTIVFKLHVLC--ERGGPR-- 178
NTS+IQDEVLAHRLGLIP+ DPRLFE+ EN + E +T+ F L + C + GP+
Sbjct: 88 NTSIIQDEVLAHRLGLIPLKADPRLFEFRPENAEEGTEFDTLEFSLKIKCTNNKYGPKDS 147
Query: 179 ---------LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP 229
+V ++ +KW P G++ + + D P
Sbjct: 148 FRAEDLYENHSVYSSSIKWHPIGNQASIHKEADVGPVDD--------------------- 186
Query: 230 IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
DI I+++ PG E+++ H V I T TA YR+LPE+ L +V+ +A
Sbjct: 187 -----DILISKMRPGHELDM--HLVVHIFDT--------TASYRLLPEVTLTREVDGSEA 231
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIF 349
L V ++ G +A V R + R R + + V + R++DHFIF
Sbjct: 232 TLLQSCFSPGVIGLDSDG----KAFVRDARYDSCSRNAYRY-DCIKDAVILSRIRDHFIF 286
Query: 350 TIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ES GA+ P +F EAVKIL DKC+ ++ EL+
Sbjct: 287 NVESVGAMPPNVIFVEAVKILRDKCKTLLDELN 319
>gi|389624551|ref|XP_003709929.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|351649458|gb|EHA57317.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|440471601|gb|ELQ40590.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae Y34]
gi|440481959|gb|ELQ62489.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae P131]
Length = 373
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/373 (35%), Positives = 195/373 (52%), Gaps = 52/373 (13%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + +T + Y GA+ G +++ ++ F + ++ + F LIG
Sbjct: 14 RRKLVGINKETVTNTISTDYPGAH--YGEEHAWDVNEFSQHLNIQFHQNDPSLASFSLIG 71
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---------IVD 145
+DA+IANAFRRI+IAE+P++AIE+V I NNTSVIQDEVLA RLGL+P+ +
Sbjct: 72 VDASIANAFRRIMIAEIPSLAIERVFITNNTSVIQDEVLAQRLGLVPLKGSKEGLRKFMK 131
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
P D S + NT+ +L+V C R N P E P+
Sbjct: 132 PFKRTETGGFDNSFDFNTVNLRLNVKCTR----------------NPDAKPGENDPNK-A 174
Query: 206 SSKPRTYTS---FSSSQDLLPEFSNN----PIRPMLDITIARLGPGQEIELEAHAVKGIG 258
KP Y S F + FS + P+ P DI IA+L PGQ I+LE HA G G
Sbjct: 175 YIKPNVYASDIEFVPAGQQTDYFSGDGAIVPVNP--DILIAKLRPGQGIDLEMHAHIGYG 232
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL--------VKTCPVNVFDIEDIGSGK 310
HAK+SPV TA YR++P I +++ + DAEK ++ PV + ++ GSG
Sbjct: 233 WDHAKFSPVCTASYRLMPIIDIVKPIVGADAEKFRDCFPDGVIRLQPVTAAEAKEKGSGY 292
Query: 311 K------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
+ +A V P T+ RECLR E+E +V + R +DHFIF+IES G + LF
Sbjct: 293 EGHKGEMKAVVNDPMRDTVSRECLRHA-EFEGKVKLGRRRDHFIFSIESAGQWDSDELFL 351
Query: 365 EAVKILEDKCERV 377
++ L+ KC+++
Sbjct: 352 ASIAELKSKCKKL 364
>gi|71013592|ref|XP_758635.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
gi|46098293|gb|EAK83526.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
Length = 320
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 161/285 (56%), Gaps = 38/285 (13%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R N D P+H G +N+ L N +V V RL+ EFDLIG
Sbjct: 63 ERVGSVANTDFPLHYP-----------GENNAFSLAAANQNLKVIVTRLSDASCEFDLIG 111
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSE 154
+DA+IANA RR+L+AE+PT+AIE V I NNTS+IQDEVL+HRLGL+P+ ++P
Sbjct: 112 VDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGLVPLAINPDKVAMRMP 171
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS-----NPSSKP 209
D +++ NT+VF L CER N S ET PD N S+
Sbjct: 172 GDEADDSNTVVFHLKAKCER----------------NRSAARGETDPDKLYIGHNVYSEQ 215
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVA 268
+ + + +F+++P RP+ D I IA+L PGQE++LE H KGIGK HAK+SPVA
Sbjct: 216 LRWDAKGGQEK---DFADSPPRPVQDKILIAKLRPGQELDLELHCEKGIGKDHAKFSPVA 272
Query: 269 TAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
TA YR+LP I LL+ + DE +K V P V ++ GSGK R+
Sbjct: 273 TATYRLLPHIQLLQPIPDESIDKFVSCFPPGVIGVQ--GSGKTRS 315
>gi|340722889|ref|XP_003399833.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus terrestris]
Length = 505
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 181/329 (55%), Gaps = 47/329 (14%)
Query: 55 SGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELP 112
+ Y + L +F F+++VIR ++D+ +EFDLIG ANAFRR+L++E+P
Sbjct: 19 ASEYTNYQPQQDWNLHNFKKEFKIQVIRESEDERELEFDLIGYPVGFANAFRRVLLSEVP 78
Query: 113 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY----MSENDTSNEKNTIVFKL 168
TMAIEKV I NNTS+IQDEVLAHRLGLIP+ DPRLFEY + + D ++++T+ ++L
Sbjct: 79 TMAIEKVYIVNNTSLIQDEVLAHRLGLIPLQADPRLFEYPSSTIKDEDEVSDQDTLRYEL 138
Query: 169 HVLCERG--GPRLTVKTNEL-----------KWLPNGSELPLETKPDSNPSSKPRTYTSF 215
V C P+ + +TN++ KW+P G + + PR
Sbjct: 139 KVSCTWNPQAPKDSRRTNDMYRNSNVYSKDIKWVPIGRQAEI----------YPRGAEQL 188
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
+D DI I ++ PGQEI + HAVKGIGK HAK+SPVATA YR+L
Sbjct: 189 GVLED--------------DILICKMRPGQEIHVFMHAVKGIGKDHAKFSPVATASYRLL 234
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG---KKRATVAQPRACTLCRECLRCGE 332
P+I L++ V E A++L + V ++ + G + A V PR + R + E
Sbjct: 235 PDIQLVKSVRGEMADRLKSCFSIGVIEVIETKPGDPESREAKVKNPRYDSCSRNVFQ-HE 293
Query: 333 EWEKRVSIRRVKDHFIFTIESTGALSPET 361
+ + V + RV++H I ++ ++ E+
Sbjct: 294 DLKGYVRLSRVRNHIISQLQDNQLINDES 322
>gi|402224041|gb|EJU04104.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 362
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 185/361 (51%), Gaps = 25/361 (6%)
Query: 24 VPQKLPPH--IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVI 81
+P+++ PH + RV H + Y G + G + L+ F + +V+V
Sbjct: 1 MPEEIHPHRLVHIASERVS-------HVSSTDYPGHWP--GESYTWDLEFFRKSLQVDVK 51
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RLT ++FDL+G DAAIANA RRI+I E+ T+A+E V + NTSV+QDEVLA RLGL+P
Sbjct: 52 RLTPTTIDFDLVGTDAAIANALRRIMIGEVETIAVENVWVWQNTSVMQDEVLASRLGLVP 111
Query: 142 IIVDPRLFEYMSENDTSNEKNTIVFKLHVLC-ERGGPRLTVKTNELKWLPNGSELPLETK 200
+ ++P E + N + NTI F++ V C R P P GS P E
Sbjct: 112 LRINPARLESWTPNAVPTDANTISFEVQVTCTSRPFP------------PRGSTDPSELY 159
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+S+ + + + L ++ P DI + +L PGQE+ +E H VK G+
Sbjct: 160 ENSSIYASHLRWKPVGAQAALPDWLADPPSVAKPDIVLVKLRPGQELNIEMHCVKSCGRD 219
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAK+SPVATA YR+LP I +L+ + ++ K +++ V + V R
Sbjct: 220 HAKYSPVATATYRLLPYIQILKPIPEQLQAKFMQSFSPGVMGKRRNKQEEWEVFVKDARK 279
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
T+ R E+E V + RV+DHF+FTIES G ++P + EA+ + K V
Sbjct: 280 DTMSRNVF-LYPEFEGAVKLTRVRDHFLFTIESAGQMAPNAILPEAIAVFRRKLRTVSKA 338
Query: 381 L 381
L
Sbjct: 339 L 339
>gi|350403568|ref|XP_003486838.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus impatiens]
Length = 505
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 176/320 (55%), Gaps = 47/320 (14%)
Query: 55 SGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELP 112
+ Y + L +F F+++VIR ++D+ +EFDLIG ANAFRR+L++E+P
Sbjct: 19 ASEYTNYQPQQDWNLHNFKKEFKIQVIRESEDERELEFDLIGYPVGFANAFRRVLLSEVP 78
Query: 113 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN----DTSNEKNTIVFKL 168
TMAIEKV I NNTS+IQDEVLAHRLGL+P+ DPRLFEY S D ++++T+ ++L
Sbjct: 79 TMAIEKVYIVNNTSLIQDEVLAHRLGLVPLQADPRLFEYPSSTIKNEDEVSDQDTLRYEL 138
Query: 169 HVLCERG--GPRLTVKTNEL-----------KWLPNGSELPLETKPDSNPSSKPRTYTSF 215
V C P+ + +TN++ KW+P G + L PR
Sbjct: 139 KVSCTWNPQAPKDSRRTNDMYRNSNVYSKDIKWVPIGRQAEL----------YPRGAEQL 188
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
+D DI I ++ PGQEI + HAVKGIGK HAK+SPVATA YR+L
Sbjct: 189 GVLED--------------DILICKMRPGQEIHVFMHAVKGIGKDHAKFSPVATASYRLL 234
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG---KKRATVAQPRACTLCRECLRCGE 332
P+I L++ V E A++L + V ++ + G + A V PR + R + E
Sbjct: 235 PDIQLVKPVRGEMADRLKSCFSIGVIEVIETKPGDPESREAKVKNPRYDSCSRNVFQ-HE 293
Query: 333 EWEKRVSIRRVKDHFIFTIE 352
+ + V + RV++H I ++
Sbjct: 294 DLKGYVRLSRVRNHIISQLQ 313
>gi|154319504|ref|XP_001559069.1| hypothetical protein BC1G_02233 [Botryotinia fuckeliana B05.10]
gi|347842400|emb|CCD56972.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Botryotinia fuckeliana]
Length = 389
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 176/327 (53%), Gaps = 55/327 (16%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-L 148
F LIGIDA++ANAFRRILIAE+PT+AIE + NNTSVIQDEVL RLGL+P L
Sbjct: 78 FSLIGIDASVANAFRRILIAEIPTLAIEYCFVKNNTSVIQDEVLCARLGLVPFKGGKEGL 137
Query: 149 FEYMS-------------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
++M + S + NTI L + C R N
Sbjct: 138 LDFMKWFQKPEEETPEEERHLGSFDHNTIQLTLKIECTR----------------NKEAA 181
Query: 196 PLETKP-----DSNPSSKPRTYTSFSSSQDLLPEFSN-NPIR-PMLDITIARLGPGQEIE 248
P ET P +++ +K + F L FS N I+ P DI IA++ PGQ I+
Sbjct: 182 PGETDPRKVYHNAHVYAKDIEFKPFGRQ---LEYFSGENTIKSPNPDILIAKMRPGQVID 238
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-- 306
++ HA+KGIG+ HAK+SPVATA YR+LP I + + + +DA+K + P V IE +
Sbjct: 239 IDMHAIKGIGRDHAKFSPVATASYRLLPVIDITQPILGKDAKKFKRCFPDGVIGIEKVTA 298
Query: 307 ------GS------GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIEST 354
GS G+ +A V T+ RECLR EE++ +V + RV+DHFIF+IES
Sbjct: 299 KEAKIKGSGYEGHEGEDKAVVVDAMRDTVSRECLR-HEEFQGKVKLGRVRDHFIFSIESL 357
Query: 355 GALSPETLFTEAVKILEDKCERVITEL 381
G + LF E++K L KCE T L
Sbjct: 358 GQWDSDELFLESIKTLRTKCEAFKTSL 384
>gi|160331409|ref|XP_001712412.1| rpa5 [Hemiselmis andersenii]
gi|159765860|gb|ABW98087.1| rpa5 [Hemiselmis andersenii]
Length = 335
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 33/340 (9%)
Query: 48 HTENVMYSGAYAS----MGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAF 103
H E + ++ ++ + N + F ++ I+ ++++ F + G D + +NA
Sbjct: 14 HLEQIQFNKSFIGSKNFIENQNPFSISDFRYGISIKAIKKNQEELIFQIKGFDFSFSNAL 73
Query: 104 RRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNT 163
RRIL++E+ IEKV +N+S++ DE++AHRLG+IP+ V P +Y + T N
Sbjct: 74 RRILLSEISIFGIEKVFFYDNSSILNDEIIAHRLGMIPLFVSPHFIDYSVKKKTQNFLKI 133
Query: 164 IVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP 223
I L ++ N PN + S K SF
Sbjct: 134 I--------------LNLRANH----PNNFFKNISIYSKSLKWKKYGVLKSF-------- 167
Query: 224 EFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE 282
F N P++P+ DI IA+L PGQ+IE E ++ GIG HAK+SPV + +Y++ P+I ++
Sbjct: 168 -FKNVPVKPVFKDILIAKLNPGQKIECECESLIGIGNNHAKFSPVGSTFYKIFPKIKIIS 226
Query: 283 DVEDEDAEKLVKTCPVNVFDIEDIG-SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIR 341
++ ++A LV+ CP+ VFD+E+ KR V+ P CT+C+EC+ + ++ I
Sbjct: 227 EIFGKEAVFLVQKCPMKVFDLEEFSLFSLKRLFVSSPNYCTMCKECIDFPKYVVPKIRIG 286
Query: 342 RVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
R F IE+TG SPE LF A+ +L KC + + L
Sbjct: 287 RNNQKITFIIETTGIFSPEILFHRAIFLLVGKCNQSLLSL 326
>gi|83282536|ref|XP_729812.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Plasmodium yoelii yoelii 17XNL]
gi|23488700|gb|EAA21377.1| DNA-directed RNA polymerases i and iii 40 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 286
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 161/306 (52%), Gaps = 43/306 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+++I+ ++ + ++ ++ +IANA RRI+I+E+PT+AIEKV I NT VI DE+L HRL
Sbjct: 1 MKIIKNEENLLILEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRL 60
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL-------TVKTNELKWLP 190
GLIP D L Y + N N FKLHV C + + +LKW P
Sbjct: 61 GLIPFKFDADLLNYKDPYEKYNNLNCFCFKLHVKCNSINNNKNGNENYQCIYSKDLKWCP 120
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIEL 249
E +F NNP + + D I I +LG GQEIEL
Sbjct: 121 LNEEQK--------------------------KKFENNPPKVVEDNILITKLGSGQEIEL 154
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIG 307
KGIGKTHAKWSPV TA Y+M P E + + + LV CP NVFDIE+ G
Sbjct: 155 ICFLEKGIGKTHAKWSPVCTAVYKMFPSFNFDVHEKFTNYEKKDLVTICPKNVFDIEESG 214
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ P C+ CR C+ E++ ++++ ++ K+HFIFT+ESTG +F +A+
Sbjct: 215 N----LVAKNPLDCSSCRACI---EKYPQKITFQKTKNHFIFTVESTGCFPSADIFKKAL 267
Query: 368 KILEDK 373
IL+ K
Sbjct: 268 NILKVK 273
>gi|358391580|gb|EHK40984.1| hypothetical protein TRIATDRAFT_28889 [Trichoderma atroviride IMI
206040]
Length = 377
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 172/334 (51%), Gaps = 44/334 (13%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D++ ++HF + F ++ R +D F LIGIDA++ANAFRRILIAE+PT+AIE V I
Sbjct: 41 GEDHAFSIEHFQSAFSIQFHRNEANDASFSLIGIDASLANAFRRILIAEIPTLAIEDVFI 100
Query: 122 ANNTSVIQDEVLAHRLGLIPI-------------IVDPRLFEYMSENDTSNEKNTIVFKL 168
NNTSVIQDEVLAHRLGL+P P E N S + NT+ +L
Sbjct: 101 ENNTSVIQDEVLAHRLGLVPFNGGREGIHNFLKWYKKPAAGEDQYAN--SFDWNTVRLEL 158
Query: 169 HVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN 228
+V C + + LK + + P+ + Y S N
Sbjct: 159 NVTCTVNQDAAPTENDPLKAYHHAHVYARDIV--FAPTGRQAEYFS-----------GEN 205
Query: 229 PIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
IRP+ DI IA+L P Q I L H KGIG H+K+SPVATA YR+LP I + +
Sbjct: 206 AIRPVNPDILIAKLRPKQTINLAMHMHKGIGADHSKFSPVATASYRLLPLIHITRPILGA 265
Query: 288 DAEKLVKTCPVNVF--------DIEDIGSGKK------RATVAQPRACTLCRECLRCGEE 333
DAEK K P V D+ GSG + +A V T+ RE LR E
Sbjct: 266 DAEKFQKCFPEGVIGLEPVTREDVSKAGSGYEGHLGEVKAVVKDSMKDTVSREALRHA-E 324
Query: 334 WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+E +V + R +DHFIF+IESTG + LF E+V
Sbjct: 325 FEGKVKLGRRRDHFIFSIESTGQWDSDELFLESV 358
>gi|84994468|ref|XP_951956.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide
[Theileria annulata strain Ankara]
gi|65302117|emb|CAI74224.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide,
putative [Theileria annulata]
Length = 329
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 179/332 (53%), Gaps = 69/332 (20%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N +++ ++ T + ++ G+D + ANA RRILI+E+PT+A+E V I NT V+QDE+LA
Sbjct: 32 NLQIKFLKKTPEFSVVEIAGLDVSFANALRRILISEVPTLAVETVQIYQNTGVVQDELLA 91
Query: 135 HRLGLIPIIVDPRLFEYMSENDTS---------NEKNTIVFKLHVLCER--GGPRLTVKT 183
HRLGLIP +DP LF + S + + N+KN++ FKL V + L++ +
Sbjct: 92 HRLGLIPFSIDPDLFNFKSSSKNNHCFADCEEINDKNSVCFKLKVKYNKFDQSEYLSIYS 151
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLG 242
N+LKW+P S++Q+++ F +NP +P+ DI I +LG
Sbjct: 152 NDLKWVP------------------------LSNNQEIM--FKDNPPKPVYGDILITKLG 185
Query: 243 PGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV-----LLEDVEDE-----DAEKL 292
PGQEI+L + KGIGK H+KWSPV+TA Y+ +P+IV LLE D + + L
Sbjct: 186 PGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMPKIVYNVDILLEFSADHKLTATEKKNL 245
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFT-- 350
K CP+NVF K + P CT CR CL E + K++ I ++ +H I T
Sbjct: 246 PKICPMNVF-----SYSKGEVNIENPLNCTSCRRCL---ELYPKKIIISKLTNHIICTFQ 297
Query: 351 --------IESTGALSPETLFTEAVKILEDKC 374
IES+G+++ L + L D C
Sbjct: 298 YFNHFSVSIESSGSVTSYDLLLVS---LYDSC 326
>gi|225717016|gb|ACO14354.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 239
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 143/240 (59%), Gaps = 42/240 (17%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + Y G Y G D++ L F NFR++V+++ + MEFD++GIDA+IANAFRRI
Sbjct: 25 VHTTD--YPGNYP--GYDDTWSLQKFQKNFRIDVVQMDETCMEFDMVGIDASIANAFRRI 80
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND-TSNEKNTIV 165
L+AE+PTMA+EKV I NNTS+IQDEVLA RLGLIPI DPRLFEY + D E +TI
Sbjct: 81 LLAEVPTMAVEKVFIYNNTSIIQDEVLAQRLGLIPIKADPRLFEYRNAGDEEGTEIDTIQ 140
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
+L + C R TK ++P + +S
Sbjct: 141 LQLKIKCTRNHQ--------------------ATKDSADPQELYLNHMVYSK-------- 172
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
DI +A+L PGQE+++ H VKGIG+ HAK+SPVATA YR+LPEI L++ VE
Sbjct: 173 ---------DILLAKLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMKPVE 223
>gi|159116466|ref|XP_001708454.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
gi|157436566|gb|EDO80780.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
Length = 350
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 175/341 (51%), Gaps = 56/341 (16%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
D L F N + + D FD+I + IAN RRI++ E+PTMAI+ V++
Sbjct: 19 DMVTDLSAFQNRLEYVIWKDECDTFSFDVINLSPVIANTIRRIILDEVPTMAIDTVVVHE 78
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLC----------E 173
N+S+I DE+ +HRLGL+P+ +DPRLFEY + D +E+NT+VFKL V E
Sbjct: 79 NSSIIADEIFSHRLGLVPMNIDPRLFEYHEDGDKIHERNTVVFKLDVTAPATYSSSFNDE 138
Query: 174 RGGPRLTVKTNELKWLPNGSE--LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR 231
G V + ++ W+P G + L+ + ++ SS P P+
Sbjct: 139 EPG-WFYVYSRDIYWVPIGGQKDWLLKQEVRADMSSLPA------------------PLD 179
Query: 232 PMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV------E 285
P DI +A+L PGQ I E + KGIG+ HAK+ PV TAWY+M +I L +D
Sbjct: 180 P--DILLAKLAPGQRIFCEIYCHKGIGRMHAKFQPVGTAWYKMKTQIALDKDALLQHPEV 237
Query: 286 DEDAEKLV----KTCPVNVF-------DIEDIGSGKKRATVAQPRACTLCRECLRCGEEW 334
+ D +KLV K CPVNVF DIED T ACTLCREC+ +
Sbjct: 238 NGDVDKLVTKLHKVCPVNVFADVTRQLDIEDFSVHHPDRT----EACTLCRECIAAFTDE 293
Query: 335 EKRVSIR--RVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ + IR VK H +FTIES ++ EA+ +++ K
Sbjct: 294 QNQCGIRLELVKTHLVFTIESCSWYRARDIYLEALTVMQQK 334
>gi|402469296|gb|EJW04273.1| hypothetical protein EDEG_01455 [Edhazardia aedis USNM 41457]
Length = 313
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 184/322 (57%), Gaps = 42/322 (13%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
+ S +D + + +E+I T + +EFDL +D +IANA RRILIAELPTMAIE V
Sbjct: 15 NESSNMDEYLDKIELEIINHTSNSLEFDLKNVDCSIANALRRILIAELPTMAIEYVNFYK 74
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPR--LTV 181
VI +E+LAHRLGL+PI++DP++FEY + DT NEKN + F VL ++ + V
Sbjct: 75 YNGVIPEEILAHRLGLLPILIDPKVFEYKNSTDTENEKNALKF---VLKKQNNMNDIVVV 131
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIA 239
++++KW+P G++ L+P RP + I I
Sbjct: 132 TSDDIKWVPLGNQ-----------------------KDTLVP-------RPRIKSGIPIT 161
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN 299
++ GQEIE+E +A+KGIGK HAKWSPV YR+ P I ++D+ DEDA KL K
Sbjct: 162 KICNGQEIEIEMYAIKGIGKDHAKWSPVCPVSYRLHPAIE-IKDIYDEDAFKLQKCFSSG 220
Query: 300 VFDIEDI-GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALS 358
V D+ + + +A V+ R T+ RE LR E++ +V I ++ +HFIF I+ T +
Sbjct: 221 VIDVSRCPETNRMKAFVSNQRLDTMSREALR-HPEFDGKVFISKIPNHFIFKIQ-TIYID 278
Query: 359 PETLFTEAVKILEDKCERVITE 380
P L +++ +L+ KC RVI E
Sbjct: 279 PIVLLQQSLLVLQRKC-RVIKE 299
>gi|328785531|ref|XP_625072.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Apis mellifera]
Length = 510
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 177/320 (55%), Gaps = 47/320 (14%)
Query: 55 SGAYASMGVDNSLQLDHFCNNFRVEVIRLTKD--DMEFDLIGIDAAIANAFRRILIAELP 112
+ Y L +F F+++V+R ++D ++EFDLIG ANAFRR+L++E+P
Sbjct: 19 ASEYTHYQSQQDWNLSNFKKEFKIQVMRESEDTRELEFDLIGYPVGFANAFRRVLLSEVP 78
Query: 113 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKL 168
TMAIEKV I NNTS+IQDEVLAHRLGLIP+ DPRLFEY S + D ++++T+ ++L
Sbjct: 79 TMAIEKVYIVNNTSLIQDEVLAHRLGLIPLRADPRLFEYPSSTAKDQDEVSDQDTLRYEL 138
Query: 169 HVLC--ERGGPRLTVKTNEL-----------KWLPNGSELPLETKPDSNPSSKPRTYTSF 215
+ C P+ + +TN++ KW+P G + L PR
Sbjct: 139 KISCTWNSQAPKDSRRTNDMYRNSNVYSRDIKWVPIGHQAEL----------YPRGTEQL 188
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
S ++ DI I ++ PGQEI HAVKGIGK HAK+SPVATA YR+L
Sbjct: 189 SVLEN--------------DILICKMRPGQEIHAFMHAVKGIGKDHAKFSPVATASYRLL 234
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG---KKRATVAQPRACTLCRECLRCGE 332
P+I +++ V+ E A++L + V ++ + G + A V PR + R + E
Sbjct: 235 PDIQIIKPVKGEMADRLKNCFSIGVIEVIENKPGDPDSREARVKNPRYDSCSRNVFQ-HE 293
Query: 333 EWEKRVSIRRVKDHFIFTIE 352
+ + + + R+++H I ++
Sbjct: 294 DLKGCIRLNRIRNHIISQLQ 313
>gi|402080745|gb|EJT75890.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 373
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/376 (34%), Positives = 190/376 (50%), Gaps = 58/376 (15%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + + G + G ++ LD F F ++ + F L+G
Sbjct: 14 RRKIVGINKETVTNVSSTDFPGHF--FGEQHAWDLDLFSQTFSIQFHQNDPFHASFSLVG 71
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-LFEYM- 152
+DA+IANAFRRI+I+E+P++AIE+V I+NNTSVIQDEVLA RLGL+P+ L +M
Sbjct: 72 VDASIANAFRRIMISEIPSLAIERVFISNNTSVIQDEVLAQRLGLVPLRGSREGLRRFMR 131
Query: 153 -------SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
D S + NT+ +L V C R NE +++P
Sbjct: 132 VYRKSEAGAFDNSFDFNTVNLRLSVQCSR---------NEAA-----------AAGETDP 171
Query: 206 SSKPRTYTSFSSSQDLLPE------FSNN----PIRPMLDITIARLGPGQEIELEAHAVK 255
+ ++ + LPE FS + P+ P DI +A+L PGQ IELE HA
Sbjct: 172 AKLYHHANVYARDIEFLPEGQQADWFSGDGVIGPVNP--DILLAKLRPGQAIELEMHAHV 229
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------G 307
G G HAK+SPV TA YR++P I + + DAEK P V + + G
Sbjct: 230 GYGWDHAKFSPVCTASYRLMPTIDITRPILGADAEKFRDCFPDGVIGLRKVTAEDAARAG 289
Query: 308 SGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
SG + +A V P T+ RECLR E+E +V + R +DHFIF++ES G +
Sbjct: 290 SGYEGRKGELKAVVEDPMRDTVSRECLRHA-EFEGKVKLGRRRDHFIFSVESAGQWGSDE 348
Query: 362 LFTEAVKILEDKCERV 377
LF AV L+ KC+++
Sbjct: 349 LFLAAVAELKSKCQKM 364
>gi|340520524|gb|EGR50760.1| predicted protein [Trichoderma reesei QM6a]
Length = 377
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 143/367 (38%), Positives = 187/367 (50%), Gaps = 54/367 (14%)
Query: 33 EFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDL 92
+ +R V N + + + + G + G D++ +D F + F V+ R +D F L
Sbjct: 14 QLRRNTVGINKETVSNVSSTDFPGHFP--GEDHAFSIDRFKSAFSVQFHRNEPNDASFSL 71
Query: 93 IGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---------- 142
+GIDA++ANAFRRILIAE+PT+AIE V I NNTSVIQDEVLAHRLGLIP
Sbjct: 72 VGIDASLANAFRRILIAEIPTLAIEDVYIENNTSVIQDEVLAHRLGLIPFNGGREGIHNF 131
Query: 143 ---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P E N S + NT+ +L+V C TV P+ S P ET
Sbjct: 132 LKWYKKPEAGEDPYAN--SFDWNTVRLELNVTC-------TVN-------PDAS--PTET 173
Query: 200 KPDSNPSSKPRTYTS---FSSSQDLLPEFSN-NPIRPM-LDITIARLGPGQEIELEAHAV 254
P + Y F + + FS N I P+ DI IA+L P Q I L H
Sbjct: 174 DP-LKAYNHAHVYAKDIVFVPTGRQVEYFSGENAIAPVNPDILIAKLRPKQSINLAMHMH 232
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI-------- 306
KGIG H+K+SPVATA YR+LP I + + DAEK + P V +E I
Sbjct: 233 KGIGADHSKFSPVATASYRLLPLINITRPIIGADAEKFQRCFPEGVIGLEKISREEASRP 292
Query: 307 GSGKK------RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
GSG + +A V T+ RE LR E+E +V + R +DHFIF+IESTG +
Sbjct: 293 GSGYEGHAGELKAVVKDTMKDTVSREALRH-PEFEGKVKLGRRRDHFIFSIESTGQWDSD 351
Query: 361 TLFTEAV 367
LF EAV
Sbjct: 352 ELFLEAV 358
>gi|253744733|gb|EET00889.1| DNA-directed RNA polymerase subunit D [Giardia intestinalis ATCC
50581]
Length = 350
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 166/316 (52%), Gaps = 50/316 (15%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
D FD+I + IAN RRI++ E+PT+AI+ V++ N+S+I DE+ +HRLGL+P+ +D
Sbjct: 41 DLFSFDVINLSPVIANTIRRIILDEVPTIAIDTVVVHENSSIIADEIFSHRLGLVPMNID 100
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLC--------ERGGPR-LTVKTNELKWLPNGSELP 196
PRLFEY + D +E+NT+VFKL V + G PR V + ++ W+P G +
Sbjct: 101 PRLFEYHEDGDKIHERNTVVFKLDVTAPATYPGSFQDGEPRWFYVYSRDIHWVPIGGQ-- 158
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
++ Q++ P S+ P DI +A+L PGQ I E + KG
Sbjct: 159 ----------------KNWLPEQEVRPGTSSLPAPLDPDILLAKLAPGQRIFCEIYCHKG 202
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDV----------EDEDAEKLVKTCPVNVF----- 301
+G THAK+ PV TAWY+M ++ L +D + EKL K CPV VF
Sbjct: 203 VGHTHAKFQPVGTAWYKMKTQVSLDKDALLQHPEIGGNAGKLVEKLHKVCPVGVFAGVDR 262
Query: 302 --DIEDIGSGKKRATVAQPRACTLCRECLR--CGEEWEKRVSIRRVKDHFIFTIESTGAL 357
DIED + ACTLCREC+ E+ + V I +K H +FTIES
Sbjct: 263 QLDIEDFSTRHPERV----EACTLCRECIAGFTDEQSQCGVRIELIKTHLVFTIESCSWY 318
Query: 358 SPETLFTEAVKILEDK 373
++ EA+ +++ K
Sbjct: 319 RARDIYLEALTVMQQK 334
>gi|399218932|emb|CCF75819.1| unnamed protein product [Babesia microti strain RI]
Length = 318
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 173/318 (54%), Gaps = 45/318 (14%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
+N ++ ++ D ++ G+D + NA RRILIAE+P++AIE V++ NT +I D+VL
Sbjct: 34 DNLAIKFLKREFDHSIIEIKGLDVSFVNAIRRILIAEVPSLAIETVMVWQNTGLIHDDVL 93
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGG--PRLTVKTNELKWLPN 191
AHRL L+P VDP Y + NE N++ F+L V + +V T++LKW+P
Sbjct: 94 AHRLALVPFNVDPEEINYRGHENL-NESNSVCFELKVAHDANCIEKYQSVYTSQLKWIPL 152
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELE 250
G E N RP+ DI + +L PGQ+IEL+
Sbjct: 153 GDEQH--------------------------KRLGKNQPRPLFEDILLTKLAPGQQIELK 186
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED-------EDAEKLVKTCPVNVFDI 303
A+ KGIG+THAKWS V++A YR P I D +++++LV TCP+NVF +
Sbjct: 187 AYLEKGIGRTHAKWSIVSSATYRFYPHIGSHSTYSDISSQLTRDESKELVATCPMNVFAL 246
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
+ G+ V P CT CR C+ E K+V+I +V +HFIF+IE+ G +S F
Sbjct: 247 DHKGN----VIVEDPLKCTSCRACI----ERFKQVTITKVTNHFIFSIETCGPISSWDAF 298
Query: 364 TEAVKILEDKCERVITEL 381
++V IL++K +++ +L
Sbjct: 299 VKSVNILKNKGDKLKCKL 316
>gi|408400667|gb|EKJ79744.1| hypothetical protein FPSE_00024 [Fusarium pseudograminearum CS3096]
Length = 381
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 182/358 (50%), Gaps = 40/358 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + Y G + G DN LD F + F V + + F L+G
Sbjct: 20 RRQTVGINKETVTNISSTDYPGHHP--GEDNEYTLDRFRDAFSVNFHQNDQFLSSFSLVG 77
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PRLFE 150
IDA++ANAFRRIL++E+PT+AIE V I NNTSVIQDEVLAHRLGLIP +
Sbjct: 78 IDASLANAFRRILLSEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFKGGREGLHNFLK 137
Query: 151 YMSENDTSNEK-------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ + + ++ NT+ +L+V C + + LK N +
Sbjct: 138 WHKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEEASPAENDPLKAYHNAHVYARDIV--F 195
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
P+ + Y FS + P NP DI IA+L P Q I L H KGIG HAK
Sbjct: 196 VPTGRQAEY--FSGENAIAP---TNP-----DILIAKLRPRQTINLAMHMHKGIGSDHAK 245
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------G 309
+SPVATA YR+LP I + + + DAEK K P V +E + GS G
Sbjct: 246 FSPVATASYRLLPTITITQPIMGADAEKFAKCFPKGVIGLEKVTAEDAAKTGSGYEGHKG 305
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +A V T+ RE LR EE++ +V + R +DHFIF+IESTG + LF E+V
Sbjct: 306 ETKAVVVDAMKDTVSREALRH-EEFQGKVKLGRRRDHFIFSIESTGQWDSDELFLESV 362
>gi|323350237|gb|EGA84384.1| Rpc40p [Saccharomyces cerevisiae VL3]
Length = 265
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/276 (40%), Positives = 164/276 (59%), Gaps = 27/276 (9%)
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----N 162
+I+E+P++A E V NNTSVIQDEVLAHR+GL+P+ VDP + ++ N +EK N
Sbjct: 1 MISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDEN 60
Query: 163 TIVFKLHVLCERG--GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220
TIV L+V C R P+ + EL + L+ +P S+
Sbjct: 61 TIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTT------------ 108
Query: 221 LLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
F++ P+ P DI +A+L PGQEI L+AH + GIG HAK+SPV+TA YR+LP+I
Sbjct: 109 ----FADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQIN 164
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVS 339
+L+ ++ E A + K P V I++ G A V R T+ RE LR EE+ +V
Sbjct: 165 ILQPIKGESARRFQKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVK 220
Query: 340 IRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
+ RV++HFIF +ES+GA++PE +F ++V+IL++K E
Sbjct: 221 LGRVRNHFIFNVESSGAMTPEEIFFKSVRILKNKAE 256
>gi|46105474|ref|XP_380541.1| hypothetical protein FG00365.1 [Gibberella zeae PH-1]
Length = 381
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 182/358 (50%), Gaps = 40/358 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + Y G + G DN LD F + F V + + F L+G
Sbjct: 20 RRQTVGINKETVTNISSTDYPGHHP--GEDNEYTLDRFRDAFSVNFHQNDQFLSSFSLVG 77
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PRLFE 150
IDA++ANAFRRIL++E+PT+A+E V I NNTSVIQDEVLAHRLGLIP +
Sbjct: 78 IDASLANAFRRILLSEIPTLAVENVYIENNTSVIQDEVLAHRLGLIPFKGGREGLHNFLK 137
Query: 151 YMSENDTSNEK-------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ + + ++ NT+ +L+V C + + LK N +
Sbjct: 138 WHKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEDASPTENDPLKAYHNAHVYARDIV--F 195
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
P+ + Y FS + P NP DI IA+L P Q I L H KGIG HAK
Sbjct: 196 VPTGRQAEY--FSGENAIAP---TNP-----DILIAKLRPRQTINLAMHMHKGIGSDHAK 245
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------G 309
+SPVATA YR+LP I + + + DAEK K P V +E + GS G
Sbjct: 246 FSPVATASYRLLPTITITQPILGADAEKFAKCFPKGVIGLEKVTAEDAAKTGSGYEGHKG 305
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +A V T+ RE LR EE++ +V + R +DHFIF+IESTG + LF E+V
Sbjct: 306 ETKAVVVDAMKDTVSREALRH-EEFQGKVKLGRRRDHFIFSIESTGQWDSDELFLESV 362
>gi|358378075|gb|EHK15758.1| hypothetical protein TRIVIDRAFT_38208 [Trichoderma virens Gv29-8]
Length = 371
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 178/340 (52%), Gaps = 56/340 (16%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D++ ++ F + F V+ R +D F LIGIDA++ANAFRRILIAE+PT+AIE V I
Sbjct: 35 GEDHAFTIERFRSAFSVQFHRNELNDASFSLIGIDASLANAFRRILIAEIPTLAIEDVYI 94
Query: 122 ANNTSVIQDEVLAHRLGLIPI-------------IVDPRLFEYMSENDTSNEKNTIVFKL 168
NNTSVIQDEVLAHRLGLIP P E N S + NT+ +L
Sbjct: 95 ENNTSVIQDEVLAHRLGLIPFNGGREGIHNFLKWYKKPEAGEDAYAN--SFDWNTVRLEL 152
Query: 169 HVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSK-------PRTYTSFSSSQDL 221
++ C TV + PN ++ PL+ ++ +K R FS +
Sbjct: 153 NITC-------TVNPDAS---PNEND-PLKAYNHAHVYAKDIVFVPTGRQVEYFSGENAI 201
Query: 222 LPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLL 281
P NP DI IA+L P Q I L H KGIG H+K+SPVATA YR+LP I +
Sbjct: 202 AP---TNP-----DILIAKLRPKQTINLAMHMHKGIGADHSKFSPVATASYRLLPLIHIT 253
Query: 282 EDVEDEDAEKLVKTCPVNVFDIEDI--------GSGKK------RATVAQPRACTLCREC 327
+ + DAEK + P V +E I GSG + +A V T+ RE
Sbjct: 254 KPIIGADAEKFQRCFPQGVIGLEKITREEASKSGSGYEGHAGELKAVVKDSMKDTVSREA 313
Query: 328 LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
LR E+E +V + R +DHFIF+IESTG + LF EAV
Sbjct: 314 LRH-PEFEGKVKLGRRRDHFIFSIESTGQWDSDELFLEAV 352
>gi|195342596|ref|XP_002037886.1| GM18508 [Drosophila sechellia]
gi|194132736|gb|EDW54304.1| GM18508 [Drosophila sechellia]
Length = 331
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 163/294 (55%), Gaps = 46/294 (15%)
Query: 103 FRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT--SNE 160
RR++++++P+MAIEKV I NNTS+IQDEVLAHR+GL+P+ DPRLF Y +E T E
Sbjct: 66 LRRMMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTE 125
Query: 161 KNTIVFKLHVLCER---GGPRLT----------VKTNELKWLPNGSELPLETKPDSNPSS 207
++T+ F+L V C R G + V + LKWLP G + + +
Sbjct: 126 QDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYS-------- 177
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
E + N I DI IA+L PG E++L AVKG+G+ HAK+SPV
Sbjct: 178 ----------------ESAVNCIHD--DILIAQLRPGHELDLRLVAVKGLGRDHAKFSPV 219
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCREC 327
ATA YR+LP I L +V +DA L V I++ + A V R T R
Sbjct: 220 ATATYRLLPLIKLNREVTGKDAYLLQNCFSPGVIGIDE----NETAYVKDARYDTCSRNV 275
Query: 328 LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
R + V++ R++DH+IF++ES GAL P+ +F EAVK+L+ KC +I E+
Sbjct: 276 YRY-PQLNDAVTLARIRDHYIFSVESVGALKPDVIFLEAVKVLKRKCRALIDEI 328
>gi|307206448|gb|EFN84486.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Harpegnathos
saltator]
Length = 390
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 170/307 (55%), Gaps = 22/307 (7%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
N+L L+ F R+EV++ + +EFD+IG +A+ NAFRRIL++E+P+MAIEKV + NN
Sbjct: 43 NALPLEKFQKTMRIEVVQDKDNVLEFDMIGCSSALVNAFRRILLSEVPSMAIEKVYVINN 102
Query: 125 TSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN----DTSNEKNTIVFKLHVLCERGGPRLT 180
TSV+QDEVLAHRLGLIP+ DPRLFEY N D ++++T+ ++L V C + +
Sbjct: 103 TSVVQDEVLAHRLGLIPLRADPRLFEYPPSNGRKDDEVSDQDTLRYELKVACTKNPQK-- 160
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIAR 240
S+LP E +S+ SK + ++ P + DI I++
Sbjct: 161 ---------SQDSQLPEEIYKNSSVYSKDIKWVPIGRQAEMFPNGAEQLGVLENDILISK 211
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTC--PV 298
+ PG EI + HA KGI K HAK+SP++ A YR+LP I LL V + A+ L+K+C P
Sbjct: 212 MRPGHEIHVYMHAFKGISKDHAKYSPLSIATYRLLPNIELLTPVTGKKAD-LLKSCFSPG 270
Query: 299 NVFDIE---DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTG 355
+ +E + G + A V R R R E + V + RV DHFI+ S
Sbjct: 271 VIEVVERKTEEGESVREALVKSARYDYCSRNVFRY-PELKDCVKLTRVPDHFIWIEASEE 329
Query: 356 ALSPETL 362
+P L
Sbjct: 330 TAAPSGL 336
>gi|299750875|ref|XP_001829899.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
gi|298409112|gb|EAU91821.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
Length = 383
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 162/276 (58%), Gaps = 19/276 (6%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N +V++ RL++ +EFDL+G+DA+IANAFRRI+IAE+PT+AIE V + +NTSVI DEVLA
Sbjct: 84 NLKVQITRLSQHTIEFDLVGVDASIANAFRRIMIAEVPTIAIEHVYVWDNTSVIVDEVLA 143
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HR+GL+P+ V+P + + S + +++T++FKL V C R P GS
Sbjct: 144 HRIGLVPLNVNPSIMDSRSPQNDPTDRDTLIFKLDVTCTRN-----------PNAPKGST 192
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
P E + S+ ++ ++ PI P +I + +L PGQ + +E HAV
Sbjct: 193 NPDELYINHEVLSRDLVWSPVGQQAEVFEGCPPAPINP--NIVLTKLRPGQAVNMELHAV 250
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KG+GK HAK++PVATA YR+LP I + + + E AEK K V ++ K+ +
Sbjct: 251 KGVGKDHAKFTPVATASYRLLPHIKIKKPIPPEHAEKFAKCFSPGVIKVD---PQTKQVS 307
Query: 315 VAQP--RACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V + R T+ RE R E+ V + RV+D+F+
Sbjct: 308 VDEHNVRKDTVTREVFR-HPEFADSVELSRVRDYFL 342
>gi|383850329|ref|XP_003700748.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Megachile rotundata]
Length = 509
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 172/302 (56%), Gaps = 47/302 (15%)
Query: 69 LDHFCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
L +F F+++V+R ++D+ +EFDLIG +ANAFRR+L++E+P+MAIEKV I NNTS
Sbjct: 32 LHNFKKEFKIQVVRESEDERELEFDLIGYPVGLANAFRRVLLSEVPSMAIEKVYIVNNTS 91
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTSNEKNTIVFKLHVLCE------RGG 176
++QDEVLAHRLGLIP+ DPRLF+Y S + D ++++T+ ++L V C +
Sbjct: 92 LLQDEVLAHRLGLIPLQADPRLFDYPSSTAKDEDEVSDQDTLRYELKVTCTWNPQAPKDS 151
Query: 177 PRLT-------VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP 229
R+T V + ++KW+P G + L PR ++
Sbjct: 152 RRITDMYRNSNVYSKDIKWVPIGRQAEL----------YPRGTEQLGVLEN--------- 192
Query: 230 IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA 289
DI I ++ PGQEI HA+KGIGK HAK+SPVATA YR+LP+I L++ V E A
Sbjct: 193 -----DILICKMRPGQEIHAFMHAIKGIGKDHAKFSPVATASYRLLPDIQLIKPVRGEMA 247
Query: 290 EKLVKTCPVNVFDIEDIGSG---KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH 346
++L + V ++ + G + A V PR + R + E+ + V + RV++H
Sbjct: 248 DRLKNCFSIGVIEVIENKPGDPDSREARVKNPRYDSCSRNVFQ-HEDLKGCVQLSRVRNH 306
Query: 347 FI 348
I
Sbjct: 307 II 308
>gi|449017050|dbj|BAM80452.1| RNA polymerase I, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 383
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 184/370 (49%), Gaps = 63/370 (17%)
Query: 72 FCNNFRVEVIRLTK-----DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
F N E +R+ K D++ F++ G+DA NA RR+L+AE+PTMAIE V + N++
Sbjct: 14 FDPNKEQERVRIRKTLHRIDEVSFEVSGVDAPFLNALRRVLLAEVPTMAIEYVTVNENST 73
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHV---------------- 170
V+ DE LAHRLGL+P++ DPR FE+ E+D + +NTI F+L V
Sbjct: 74 VMNDEFLAHRLGLVPVLADPRRFEFRRESDEPSAQNTICFRLRVPPVNRKAHPEWNLSDG 133
Query: 171 ---LCERGGPRLTVKTNELKW---LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE 224
+ P + V ++++ W E L + ++P + + D L
Sbjct: 134 AVFAGDDAVPSIPVYSDDIIWEQLQTRVGESCLSSTEGASPHRSSSDAQQQAEATDGLAS 193
Query: 225 FSNN-----PIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
+++ P++ I + ++ GQ +++ AVKG+G HAKWSPVATA+Y+M+P +
Sbjct: 194 AADSTAAVEPVQVQRGILLTKMLRGQRLDIRMEAVKGLGHDHAKWSPVATAYYKMVPRVH 253
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEE------ 333
L +++ E AE + C V+VFDIE+ K V CTLC EC+R E+
Sbjct: 254 LKGELKGELAETIRGACAVHVFDIEESAGTLK---VEDESRCTLCGECVRILEDKPQLLD 310
Query: 334 ---------------------WEKR-VSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
+E VS+ + D F+F IES G + LF EA+ I
Sbjct: 311 SERPDNYSKFMQPMETDLRKVYENDFVSVCQQTDRFVFFIESVGQYRADVLFGEALAIFH 370
Query: 372 DKCERVITEL 381
KC +++ L
Sbjct: 371 SKCTKILEAL 380
>gi|154335916|ref|XP_001564194.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061228|emb|CAM38250.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 446
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 164/313 (52%), Gaps = 26/313 (8%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
M F+L + I+N FRR+L+ E+PT+A ++VLI N S + DE+L+HRLGLIP+
Sbjct: 123 MSFELQHVSPPISNLFRRVLMTEVPTLAFDRVLIEENDSPVLDELLSHRLGLIPVAGPVM 182
Query: 148 LFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLP-------NGSEL 195
+Y++E++ ++ N ++F+L + + V +++L+W+P G+++
Sbjct: 183 KMQYITESNQASFTNLDPSRILLFELDAMGAKDAAVTPVYSHQLQWVPLPGQEKKGGAKV 242
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
F++ D F +P DI + +LGPGQ I+L+A AVK
Sbjct: 243 GAGADAREAERGGDAGAAEFNTDDDDDAVFLVHP-----DILLTKLGPGQRIKLKAIAVK 297
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G G HAKW PV+ +Y M + L E + AE LVK+CP VF ED G ATV
Sbjct: 298 GFGAVHAKWCPVSACYYEMKTSVELRERLTGSAAEALVKSCPAGVFGYED-GQKGAAATV 356
Query: 316 AQPRACTLCRECLRCGEEWEK-------RVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
P CTLCRECLR + RV +++ K H IF IES G L P + ++
Sbjct: 357 LAPEKCTLCRECLRSDDNAGAAAASEGDRVRVQKDKTHVIFHIESVGQLHPAQILRFGLR 416
Query: 369 ILEDKCERVITEL 381
+ ++C R + E+
Sbjct: 417 LFAERC-RALAEI 428
>gi|342874377|gb|EGU76391.1| hypothetical protein FOXB_13069 [Fusarium oxysporum Fo5176]
Length = 381
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 181/357 (50%), Gaps = 40/357 (11%)
Query: 36 RTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGI 95
R V N + + + Y G + G D + LD F + F V+ + + F L+GI
Sbjct: 21 RQTVGINKETVTNITSTDYPGHHP--GEDLAFTLDRFRDAFSVKFHQNDQFLASFSLVGI 78
Query: 96 DAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PRLFEY 151
DA++ANAFRRIL++E+PT+AIE V I NNTSVIQDEVLAHRLGLIP ++
Sbjct: 79 DASLANAFRRILLSEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFKGGREGLHNFLKW 138
Query: 152 MSENDTSNEK-------NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
+ + + NT+ +L+V C + + LK N +
Sbjct: 139 HKKPEAGEDPYAGCFDWNTVRLELNVTCTVNEDASPAENDPLKAYHNAHVYARDIV--FV 196
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
P+ K Y FS + P NP DI IA+L P Q I L H KGIG HAK+
Sbjct: 197 PTGKQVEY--FSGEDAIAP---TNP-----DILIAKLRPRQTINLAMHMHKGIGSDHAKF 246
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------GK 310
SPVATA YR+LP I + + + DAEK K P V +E + GS G+
Sbjct: 247 SPVATASYRLLPTITITKPILGADAEKFAKCFPKGVIGLEKVTAEEAAQAGSGYEGQEGE 306
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+A V T+ RE LR +E+E +V + R +DHFIF+IESTG + LF E+V
Sbjct: 307 TKAVVVDAMKDTVSREALRH-KEFEGKVKLGRRRDHFIFSIESTGQWDSDELFLESV 362
>gi|123464689|ref|XP_001317116.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121899842|gb|EAY04893.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 341
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 171/303 (56%), Gaps = 28/303 (9%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
+D + FDL A+ ANA RR L+A +P++AIE V + +NT V+ DEVL HRLGLIPI
Sbjct: 43 EDRLVFDLTNAPASHANALRRTLLASVPSIAIELVGMLDNTGVMPDEVLCHRLGLIPINA 102
Query: 145 DPRLFEYMS---ENDTSNEKNTIVFKLHVLCERG-GPRLT-VKTNELKWLP----NGSEL 195
DP L +Y E+ +S+ ++F LHV+ RG P L+ V + + LP +GS
Sbjct: 103 DPSLLDYPKQKIEDKSSDPNEVLLFGLHVIGGRGPTPDLSNVDASMEENLPPTYIDGS-- 160
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAV 254
NP ++ + + +F N + P+ DI I ++ PGQ I L A+
Sbjct: 161 ------IENPGEILSSHLVWMPYEGQREKFGN--VAPLHADIPITKILPGQTIHLYCRAI 212
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV--EDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
KGIG HAK+ PV TA+YR++P I + +++ ++ +KL+ CP+ VFDIED +
Sbjct: 213 KGIGSDHAKFQPVCTAFYRLVPSIQVKDEINSSEKKQQKLISKCPMGVFDIED-----SK 267
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
V PR CT CREC+R VS+ + +H+ FT+ES G L EA++IL++
Sbjct: 268 LVVRSPRKCTTCRECIR-NPSLAHYVSLGKEANHYEFTVESVGVRPAYVLVKEALQILQN 326
Query: 373 KCE 375
+C+
Sbjct: 327 RCD 329
>gi|146084517|ref|XP_001465028.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
gi|134069124|emb|CAM67271.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
Length = 442
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 167/316 (52%), Gaps = 33/316 (10%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
M F++ + I+N FRR+L E+PT+A ++VLI N S + DE+L+HRLGL+P+
Sbjct: 120 MSFEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVM 179
Query: 148 LFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
Y++E++ ++ N ++F+L + V + +L+W+P LP + K
Sbjct: 180 KMHYITESNQASFSNLDPSRVLLFELDATGAKDAAVTPVYSRQLQWVP----LPGQDKKT 235
Query: 203 SNPSSKPRT----------YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ +T T S+ D F +P DI +++LGPGQ I+L+A
Sbjct: 236 GAVAGACQTGREEYAGAAGATEHSADDDDDAVFLVHP-----DILLSKLGPGQRIKLKAI 290
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
AVKG+G HAKWSPV+ +Y M + L E + AE LVK+CP VF E G
Sbjct: 291 AVKGLGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALVKSCPAGVFGYEG-GQKGAA 349
Query: 313 ATVAQPRACTLCRECLRCGEEWEK-------RVSIRRVKDHFIFTIESTGALSPETLFTE 365
ATV P CTLCRECLR ++ + RV +++ K H +F IES G L P +
Sbjct: 350 ATVVAPEKCTLCRECLRSDDKGAEAAASEGDRVRVQKEKTHVLFHIESVGQLHPAQILRF 409
Query: 366 AVKILEDKCERVITEL 381
+++ ++C R + E+
Sbjct: 410 GLRLFAERC-RALAEM 424
>gi|398014106|ref|XP_003860244.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
gi|322498464|emb|CBZ33537.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
Length = 442
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 167/316 (52%), Gaps = 33/316 (10%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
M F++ + I+N FRR+L E+PT+A ++VLI N S + DE+L+HRLGL+P+
Sbjct: 120 MSFEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVM 179
Query: 148 LFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
Y++E++ ++ N ++F+L + V + +L+W+P LP + K
Sbjct: 180 KMHYITESNQASFSNLDPSRVLLFELDATGAKDAAVTPVYSRQLQWVP----LPGQDKKT 235
Query: 203 SNPSSKPRT----------YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ +T T S+ D F +P DI +++LGPGQ I+L+A
Sbjct: 236 GAVAGACQTGREEYAGAAGATEHSADDDDDAVFLVHP-----DILLSKLGPGQRIKLKAI 290
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
AVKG+G HAKWSPV+ +Y M + L E + AE LVK+CP VF E G
Sbjct: 291 AVKGLGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALVKSCPAGVFGYEG-GQKGAA 349
Query: 313 ATVAQPRACTLCRECLRC-GEEWEK------RVSIRRVKDHFIFTIESTGALSPETLFTE 365
ATV P CTLCRECLR G+ E RV +++ K H +F IES G L P +
Sbjct: 350 ATVVAPEKCTLCRECLRSDGKGAEAAASEGDRVRVQKEKTHVLFHIESVGQLHPAQILRF 409
Query: 366 AVKILEDKCERVITEL 381
+++ ++C R + E+
Sbjct: 410 GLRLFAERC-RALAEM 424
>gi|71031382|ref|XP_765333.1| DNA-directed RNA polymerase I [Theileria parva strain Muguga]
gi|68352289|gb|EAN33050.1| DNA-directed RNA polymerase I, putative [Theileria parva]
Length = 303
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 174/313 (55%), Gaps = 52/313 (16%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
DN++ + N +V+ ++ T + +++G+D ++ANA RRILI+E+PT+A+E V I
Sbjct: 21 DNNIPILEKVKNLQVKFLKKTPEFSVVEIVGLDVSLANALRRILISEVPTLAVETVQIYQ 80
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRL 179
NT VIQDE+LAHRLGLIP +DP LF + S T+ N+KN++ FKL V
Sbjct: 81 NTGVIQDELLAHRLGLIPFAIDPDLFNFKSNFKTNCEEINDKNSVCFKLKV--------- 131
Query: 180 TVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITI 238
K N+ + + SS L+ F +NP +P+ D I I
Sbjct: 132 --KYNKFDQ------------------------SDYLSSNSLM--FKDNPPKPVYDDILI 163
Query: 239 ARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK--LVKTC 296
+L PGQEI+L + KGIGK H+KWSPV+TA Y+ +P+I + + EK L K C
Sbjct: 164 TKLAPGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMPKIEFSTEHKLTANEKKMLPKIC 223
Query: 297 PVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGA 356
P+NVF K + P CT CR CL E + K++ I ++ +H IF+IES+G+
Sbjct: 224 PMNVFSF-----SKGEVNIENPLNCTSCRRCL---ELYPKKIIISKLTNHIIFSIESSGS 275
Query: 357 LSPETLFTEAVKI 369
+S L +AV+I
Sbjct: 276 VSSYNLLLKAVEI 288
>gi|330038595|ref|XP_003239642.1| DNA-directed RNA polymerase 40k chain [Cryptomonas paramecium]
gi|327206566|gb|AEA38744.1| DNA-directed RNA polymerase 40k chain [Cryptomonas paramecium]
Length = 429
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 167/306 (54%), Gaps = 29/306 (9%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F N+ ++ V LTKDD+ ++ G+ N RR L++E+ T+ I+KV N+S + DE
Sbjct: 43 FRNDIKINVNNLTKDDLVLNITGLYLPFLNGIRRSLLSEVNTICIDKVFFYYNSSFLDDE 102
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+L+HRL LIP+++ Y N + I+F+++ + + +N +K
Sbjct: 103 LLSHRLALIPLLIVSHSSNYFF-NMLDDISKKIIFEINTETSVSSQKYLIYSNIIKLKLY 161
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
G ++S+ + + P F DI IA+L GQ+I+ E
Sbjct: 162 G------------------IHSSWLKNLHIKPVFG--------DILIAKLNSGQKIKCEC 195
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK- 310
H G G+ HAK+S V+TA+YR+ P I L+ ++ ++ A K+ CPVNVF +E+ S
Sbjct: 196 HCNFGNGEAHAKFSGVSTAFYRIFPRIKLVNEIINDHAVKIFTKCPVNVFQLENKYSFNC 255
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
K +V+QP+ CTLCRECL EE +K++ I RV++ F IESTG LSPE LF AV +L
Sbjct: 256 KILSVSQPQYCTLCRECLNFKEE-KKKIRIGRVREKVNFIIESTGVLSPEKLFHRAVCLL 314
Query: 371 EDKCER 376
KC +
Sbjct: 315 AGKCNQ 320
>gi|170579941|ref|XP_001895048.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
gi|158598143|gb|EDP36103.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
Length = 339
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 172/329 (52%), Gaps = 61/329 (18%)
Query: 64 DNSLQLD--HFCNNFRVEVIRLTKDDM--EFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
++++Q D + + ++ ++ +KD M EFDL+G++A IANA RRILIAELPT+AIEKV
Sbjct: 39 NSTIQWDVTAYISEIKIFIVNESKDGMTLEFDLVGVEAPIANAIRRILIAELPTLAIEKV 98
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY--------------MSENDTSNEKNTIV 165
+ NTS+I DEVL+HR GL+PI DPRLF+ SE + ++
Sbjct: 99 YLYQNTSIIPDEVLSHRFGLLPIKADPRLFKMPLTRVIGIDESGVDCSEEPAGDPTRNLI 158
Query: 166 FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEF 225
F++ V C R PN K +NP +S+S +P
Sbjct: 159 FEIKVNCSRN--------------PNA------LKTATNPKEIYENAFVYSNSFKWIP-- 196
Query: 226 SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE 285
+G Q L H +KG+G+ HAK+SPVATA YR+LP+IVL +
Sbjct: 197 ---------------IG-DQSTSLPCHCLKGLGRDHAKFSPVATASYRLLPQIVLKKKFS 240
Query: 286 DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
DA ++ + V +I+ G A V R+ T R LR E+ + + + R+KD
Sbjct: 241 GADARRVKSSFSEGVIEIDADGV----AFVKDARSDTCSRNILRY-EDLAEYIELSRIKD 295
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKC 374
HFIF++ESTGAL L EA K++E+KC
Sbjct: 296 HFIFSVESTGALRSAELVVEACKVMEEKC 324
>gi|449705384|gb|EMD45440.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative,
partial [Entamoeba histolytica KU27]
Length = 249
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 160/279 (57%), Gaps = 42/279 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+ I + + +EFD++GID ++AN RRI+IAE+PTMAIE V++ +N+S I DE+L HR
Sbjct: 6 RIVKISESPEKVEFDVMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHR 65
Query: 137 LGLIPIIVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVK----TNELKWLP 190
LGLIPI+ DPR F++ + ++ E++TIVF L V C + V +++L W P
Sbjct: 66 LGLIPILADPRKFKFPKDRHFTDPTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLIWEP 125
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIEL 249
G + ET F++ PI+P+ DI IA L P Q I+
Sbjct: 126 QGEQ---ETT------------------------FADCPIKPVFDDILIAELQPHQHIKC 158
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
+ KGIG+ HAK+SPV A YR++P+I +++ + E + CP+NVFDIED
Sbjct: 159 KLFCCKGIGQDHAKFSPVCPATYRLMPKITIMKQSKKMSKE-IKNCCPLNVFDIED---- 213
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V PR C +CREC+R EE + V + R ++H++
Sbjct: 214 -GELIVKNPRNCKMCRECIR--EERSEYVKLGREENHYL 249
>gi|407038499|gb|EKE39159.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 259
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 160/279 (57%), Gaps = 42/279 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+ I + + +EFD++GID ++AN RRI+IAE+PTMAIE V++ +N+S I DE+L HR
Sbjct: 6 RIVKISESPEKVEFDVMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHR 65
Query: 137 LGLIPIIVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVK----TNELKWLP 190
LGLIPI+ DPR F++ + ++ E++TIVF L V C + V +++L W P
Sbjct: 66 LGLIPILADPRKFKFPKDRHFTDPTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLIWEP 125
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIEL 249
G + ET F++ PI+P+ DI IA L P Q I+
Sbjct: 126 QGEQ---ETT------------------------FADCPIKPVFDDILIAELQPHQHIKC 158
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
+ KGIG+ HAK+SPV A YR++P+I +++ + E + CP+NVFDIED
Sbjct: 159 KLFCCKGIGQDHAKFSPVCPATYRLMPKITIMKQSKKMSKE-IKNCCPLNVFDIED---- 213
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
V PR C +CREC+R EE + V + R ++H++
Sbjct: 214 -GELIVKNPRNCKMCRECIR--EERSEYVKLGREENHYL 249
>gi|308158822|gb|EFO61385.1| DNA-directed RNA polymerase subunit D [Giardia lamblia P15]
Length = 350
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 168/322 (52%), Gaps = 62/322 (19%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
D F++I + IAN RRI++ E+PTMAI+ V++ N+S+I DE+ +HRLGL+P+ +D
Sbjct: 41 DTFSFEVINLSPIIANTIRRIILDEVPTMAIDTVVVHENSSIIADEIFSHRLGLVPMNID 100
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLC----------ERGGPRLTVKTNELKWLPNGSE- 194
PRLFEY + D +E+NT+VFKL V E G V + ++ W+P G +
Sbjct: 101 PRLFEYHEDGDKIHERNTVVFKLDVTAPATYSGNFNGEEPG-WFYVYSRDICWIPVGGQK 159
Query: 195 -LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
L+ + S+ SS P P+ P +I +A+L PGQ I E +
Sbjct: 160 DWLLKQEVRSDMSSLP------------------APLDP--NILLAKLAPGQRIFCELYC 199
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDV----------EDEDAEKLVKTCPVNVF-- 301
KGIG+ HAK+ PV TAWY+M +I L +D DE KL K CP++VF
Sbjct: 200 HKGIGRMHAKFQPVGTAWYKMKTQIALDKDKLLHHPEVNGDADELVAKLHKVCPISVFAD 259
Query: 302 -----DIEDIGSGKKRATVAQP---RACTLCRECLRCGEEWEKRVSIR--RVKDHFIFTI 351
DIED +V P ACTLCREC+ + + + IR +K H +FTI
Sbjct: 260 IDRQLDIEDF-------SVRYPDRVEACTLCRECIAAFTDEQNQCGIRLELIKTHLVFTI 312
Query: 352 ESTGALSPETLFTEAVKILEDK 373
ES ++ A+ +++ K
Sbjct: 313 ESCSWYRARDIYLAALTVMQQK 334
>gi|391867820|gb|EIT77060.1| RNA polymerase I and III, subunit RPA40/RPC40 [Aspergillus oryzae
3.042]
Length = 290
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 167/294 (56%), Gaps = 39/294 (13%)
Query: 108 IAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI--IVDP----RLFEYMSENDTS--- 158
+AE+P++AIE V + NNTSVIQDEVLA RLGLIP+ VD R F+ +E+D
Sbjct: 1 MAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVDGINWMRWFKKATEDDPEGSD 60
Query: 159 -NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
++ NTIV +L + C + P N+ P + +++ ++ T+
Sbjct: 61 PSDYNTIVLRLDIECTKN-PNADATEND----------PRKLYKNAHVYARDITFHPVGR 109
Query: 218 SQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ E + P+ P DI IA+L PGQ+I+LE H +KGIG HAK+SPVATA YR+LP
Sbjct: 110 QEQFFTGEDAIQPVNP--DILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATASYRLLP 167
Query: 277 EIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------GKKRATVAQPRACT 322
+I +L + EDA+K K P V +E + GS G+ +A V T
Sbjct: 168 DIQILRPILGEDAKKFAKCFPKGVIGLEPVTREEAAKQGSGYEGHEGETKAVVRDAFKDT 227
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
+ RECLR EE++ +V + RV+DHFIF IESTG + LF E+VK+L+ KC R
Sbjct: 228 VSRECLR-HEEFQGKVKLGRVRDHFIFNIESTGQFDSDVLFLESVKVLKLKCAR 280
>gi|157868180|ref|XP_001682643.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
gi|68126098|emb|CAJ07151.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
Length = 442
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 162/312 (51%), Gaps = 25/312 (8%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
M F++ + IAN RR+L E+PT+A ++VLI N S + DE+L+HRLGL+P+
Sbjct: 120 MSFEMQNVSPPIANLLRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVM 179
Query: 148 LFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLP------NGSELP 196
Y++E++ ++ N ++F+L + V + +L+W+P +
Sbjct: 180 KMHYITESNQASFSNLDPSRVLLFELDATGAKDAAVTPVYSGQLQWVPLPGQDKTAGAVA 239
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+ + + T S+ +D F +P DI + +LGPGQ I+L+A AVKG
Sbjct: 240 VACQAGREECAGAAGATDHSADEDDDAVFLVHP-----DILLTKLGPGQRIKLKAIAVKG 294
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
G HAKWSPV+ +Y M + L E + AE L+K+CP VF E G ATV
Sbjct: 295 FGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALIKSCPAGVFGYEG-GQRGAAATVV 353
Query: 317 QPRACTLCRECLRCGEEWEK-------RVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
P CTLCRECLR ++ + RV +++ K H +F IES G L P + +++
Sbjct: 354 APEKCTLCRECLRSEDKGAEAAANKGDRVRVQKDKTHVLFHIESVGQLHPAQILRFGLRL 413
Query: 370 LEDKCERVITEL 381
++C R + E+
Sbjct: 414 FAERC-RALAEM 424
>gi|401825113|ref|XP_003886652.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
gi|395459797|gb|AFM97671.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
Length = 305
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 166/313 (53%), Gaps = 36/313 (11%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+ N+ + + TK+ +EFDLI +D + ANA RRIL ++PTMA+ VL+ N SV
Sbjct: 23 FEQVLNDIEINITEYTKERLEFDLINVDCSFANALRRILCNDIPTMAVRDVLLKENESVF 82
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
DE +AHRLGLIP+ DP +FE+ + NE+N++ F L V E L V ++++KW
Sbjct: 83 PDEFIAHRLGLIPLEADPEMFEFAEKE--LNERNSLRFVLDVKNE-SKDVLNVYSDDIKW 139
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
+P GS+ T D SSK + + +L GQ I
Sbjct: 140 IPFGSQRG--TLKDVKFSSK---------------------------VLMFKLARGQRIS 170
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
E K IGK HAKWSPV A YR++P ++ + DV DEDA KL K V D+
Sbjct: 171 AELVCTKNIGKVHAKWSPVCPATYRLMP-LIEIGDVFDEDAYKLQKCFSEGVIDVRP-SD 228
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
G+ +A V PR T+ RE LR +E++ +V I R D+F+FTI S L P L +AV
Sbjct: 229 GRMKAYVNNPRLDTMSREALR-HDEFKDKVFIGRRSDYFLFTINSV-FLDPLYLLKKAVL 286
Query: 369 ILEDKCERVITEL 381
IL +K + E+
Sbjct: 287 ILIEKSRALKNEV 299
>gi|302923338|ref|XP_003053654.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734595|gb|EEU47941.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 381
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 182/358 (50%), Gaps = 40/358 (11%)
Query: 35 QRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIG 94
+R V N + + + Y G + G D + ++ F F V + + F L+G
Sbjct: 20 RRQTVGINKETVTNISSTDYPGHHP--GEDAAFTIERFREGFSVGFHQNDQFLSSFSLVG 77
Query: 95 IDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR-LFEYM- 152
IDA++ANAFRRIL+AE+PT+A+E V I NNTSVIQDEVLAHRLGL+P L +++
Sbjct: 78 IDASLANAFRRILLAEIPTLAVENVYIENNTSVIQDEVLAHRLGLVPFKGGREGLRDFLK 137
Query: 153 -------SENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
E+ S + NT+ +L+V C + + LK N +
Sbjct: 138 WYKKPEPGEDPFSGCFDYNTVRLELNVTCTVNPDASPTENDPLKAYNNAHVYARDIV--F 195
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
P+ + Y F + P NP DI IA+L P Q I L H KGIG HAK
Sbjct: 196 VPTGRQAEY--FDGEDAIAP---TNP-----DILIAKLRPRQTINLAMHMHKGIGADHAK 245
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI--------GS------G 309
+SPVATA YR+LP I + + + DA+K K P V +E + GS G
Sbjct: 246 FSPVATASYRLLPTITITKPILGADADKFAKCFPQGVIGLERVTAEEAAQAGSGYEGHEG 305
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +A V T+ RE LR EE+E +V + R +DHFIF+IESTG + LF E+V
Sbjct: 306 ETKAVVVDAMKDTVSREVLRH-EEFEGKVKLGRRRDHFIFSIESTGQWDSDELFLESV 362
>gi|70943148|ref|XP_741656.1| DNA-directed RNA polymerase I [Plasmodium chabaudi chabaudi]
gi|56520171|emb|CAH77688.1| DNA-directed RNA polymerase I, putative [Plasmodium chabaudi
chabaudi]
Length = 297
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 163/327 (49%), Gaps = 43/327 (13%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
I+++ V+ + P + + G+Y +N ++ F N +++I+ ++ + +
Sbjct: 4 IKYKDQFVKMGQEGPRNATTTNFYGSYFLTENENFFDINKFEENLEMKIIKNEENLLILE 63
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ ++ +IANA RRI+I+E+PT+AIEKV I NT VI DE+L HRLGLIP + L +
Sbjct: 64 IKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPFKFNADLINF 123
Query: 152 MSENDTSNEKNTIVFKLHVLCER------GGPRL-TVKTNELKWLPNGSELPLETKPDSN 204
+ N N FKLHV C G + + +LKW P E +
Sbjct: 124 KDTYEKYNNLNCFCFKLHVKCNSINNNKIGNENYQCIYSKDLKWCPLNEEQKI------- 176
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAK 263
+F NNP + + D I I +LG GQEIEL KGIGKTHAK
Sbjct: 177 -------------------KFENNPPKVVDDNILITKLGSGQEIELICFLEKGIGKTHAK 217
Query: 264 WSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
WSPV TA Y+M P E + + + LV CP VFDIE+ G+ P C
Sbjct: 218 WSPVCTAVYKMFPSFNFDVHEKFTNNEKKDLVNICPKKVFDIEETGN----LVAKNPLDC 273
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFI 348
+ CR C+ E++ +++S ++ K+H
Sbjct: 274 SSCRACI---EKYPQKISFQKTKNHLF 297
>gi|303388073|ref|XP_003072271.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
gi|303301410|gb|ADM10911.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
Length = 305
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 164/296 (55%), Gaps = 36/296 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + +K+ +EFDLI +D + ANA RRIL ++PTMAI+ V + N SV DE +AHRL
Sbjct: 32 LRITEYSKEKLEFDLINVDCSFANALRRILCNDVPTMAIKDVFLKENESVFPDEFIAHRL 91
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIP+ VDP +FE++ NE+N++ F L V E L V ++++KW+P G++
Sbjct: 92 GLIPLEVDPEMFEFVE--GEMNERNSLKFSLDVKNENKDV-LNVYSDDIKWIPLGNQR-- 146
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
E ++ SS+ + + +L GQ+I E K
Sbjct: 147 EMIKNAKFSSR---------------------------VLMFKLAHGQKISAEVVCTKNT 179
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
GKTHAKWSPV A YR+LP ++ + D DEDA ++ K V +++ G+ +A V+
Sbjct: 180 GKTHAKWSPVCPATYRLLP-LIEIGDFFDEDAFRIQKCFSEGVIEVKQ-SDGRMKAYVSN 237
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
PR T+ RE LR EE++ +V I R DHF+FTI S L P L +AV IL +K
Sbjct: 238 PRLDTMSREALR-HEEFKDKVFIGRKSDHFLFTINSV-FLDPLYLLRKAVSILIEK 291
>gi|401419509|ref|XP_003874244.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490479|emb|CBZ25739.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 434
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 161/308 (52%), Gaps = 25/308 (8%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
M F++ + I+N FRR+L E+PT+A ++VLI N S + DE+L+HRLGL+P+
Sbjct: 120 MSFEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVM 179
Query: 148 LFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
Y++E++ ++ N ++F+L + V + +L+W+P LP + K
Sbjct: 180 KMHYITESNQASFNNLDPSRVLLFELDATGAKDAAVTPVYSRQLQWVP----LPGQDKKT 235
Query: 203 SNPSS--KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+ + + + D F +P DI + +LGPGQ I+L+A AVKG+G
Sbjct: 236 GAVAGVCQAGSEECAGADDDDDAVFLVHP-----DILLTKLGPGQRIKLKAIAVKGLGAV 290
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKWSPV+ +Y M + L E + AE LVK+CP VF E G ATV P
Sbjct: 291 HAKWSPVSACYYEMKTSVELCERLTGSAAEALVKSCPTGVFGYEG-GQKGAAATVVAPEK 349
Query: 321 CTLCRECLR-------CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
CTLCRECLR RV +++ K H +F IES G L P + +++ ++
Sbjct: 350 CTLCRECLRRDDTGPGAATNEGDRVRVQKDKTHVLFHIESVGQLHPAQILRFGLRLFAER 409
Query: 374 CERVITEL 381
C R + E+
Sbjct: 410 C-RALAEM 416
>gi|85690991|ref|XP_965895.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi GB-M1]
gi|19068462|emb|CAD24930.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329785|gb|AGE96054.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 305
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 164/296 (55%), Gaps = 36/296 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + + + +EFDLI +D +IANA RRIL +E+PTMA+ + + N SV DE +AHRL
Sbjct: 32 IRITEYSSEKLEFDLINVDCSIANALRRILSSEVPTMAVRDIFLKENESVFPDEFIAHRL 91
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GL+P+ VDP +FE+ E +E+N++ F L V E G L V +++++W P GS+
Sbjct: 92 GLVPLEVDPEMFEFAGEE--LDERNSLRFTLDVRNESEGV-LNVYSDDIRWNPVGSQ--R 146
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
E D SS+ + + RL GQ+I E K +
Sbjct: 147 EIFRDVKFSSR---------------------------VLMFRLARGQKISAELVCTKNV 179
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
GK HAKWSPV A YR++P ++ + D+ DEDA KL K V D+ G+ +A V+
Sbjct: 180 GKVHAKWSPVCPATYRLMP-LIEIGDIFDEDAYKLQKCFSEGVIDVRP-SDGRMKAYVSN 237
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
PR ++ RE LR EE++ ++ I R D+F+FTI +T L P L +AV +L +K
Sbjct: 238 PRLDSMSREALR-HEEFKDKIFIGRRSDYFLFTI-NTVFLDPLYLLEKAVSVLIEK 291
>gi|432957842|ref|XP_004085906.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Oryzias latipes]
Length = 264
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 145/245 (59%), Gaps = 22/245 (8%)
Query: 110 ELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY------MSENDTSNEKNT 163
++PTMAIEKV I NNTS++QDEVLAHRLGL+PI DPRLFEY E + S E +T
Sbjct: 36 QVPTMAIEKVFIYNNTSIVQDEVLAHRLGLVPIKADPRLFEYKNIAEEFGEQEAS-EIDT 94
Query: 164 IVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP 223
I +L + C R PR + ++++ P E + SK + + D+
Sbjct: 95 IQLQLKIKCSRN-PRASKESSD----------PRELYLNHIVYSKDINWVPLGNQADVFA 143
Query: 224 EFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED 283
+ + DI IA+L PGQE+++ H VKGIGK HAK+SPVATA YR+LP+I L+E
Sbjct: 144 DSRIGAVHD--DIVIAQLRPGQELDVVMHCVKGIGKDHAKFSPVATASYRLLPDITLMEQ 201
Query: 284 VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRV 343
VE E AE+L + V D+ED+ GKK A V R T RE LR ++ + V + RV
Sbjct: 202 VEGEKAERLKRCFSRGVIDLEDV-RGKKVAKVVNSRLDTCSREVLR-HKDLKNLVKLGRV 259
Query: 344 KDHFI 348
+DHFI
Sbjct: 260 RDHFI 264
>gi|300708874|ref|XP_002996608.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
gi|239605923|gb|EEQ82937.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
Length = 293
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 168/312 (53%), Gaps = 59/312 (18%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N ++++I+ +EFDL+G+D ++ANA RRILI E+PT AIE V I +NTSV+ DE LA
Sbjct: 29 NIKLDIIKKEHLVLEFDLVGVDCSVANALRRILINEIPTFAIENVFIFDNTSVLPDEFLA 88
Query: 135 HRLGLIPIIVDPRL----FEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
HRLGLIP+ V P L F + + + +TS+E +TV +N++K++
Sbjct: 89 HRLGLIPLDVCPDLEVGDFHFELKKTNTSSE-----------------VMTVTSNDIKYI 131
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
K D P I DI IA+L P Q + +
Sbjct: 132 ----------KKDGQPD-----------------------IEISKDIPIAKLAPKQALII 158
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
E A K +G+ HAKWSPV TA YR++P I+ +ED DE+AEKL K V + G
Sbjct: 159 EMVACKNVGRVHAKWSPVCTAAYRLMP-IIKIEDFYDEEAEKLQKCFSPGVISLVKEGES 217
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
K A V++PR T+ RE R +E+E +V + R DHFIFT+ES L P L +A++I
Sbjct: 218 YK-AIVSEPRKDTVSREVFR-HKEFENKVFLGRKNDHFIFTVESL-VLDPIYLVKKALQI 274
Query: 370 LEDKCERVITEL 381
+ K + + EL
Sbjct: 275 INKKLDHLKGEL 286
>gi|313236133|emb|CBY11457.1| unnamed protein product [Oikopleura dioica]
gi|313243610|emb|CBY42293.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 171/313 (54%), Gaps = 54/313 (17%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EFD+ GID +++N RRI+IAE+P MA ++VLI NNT++IQDEVLAHRLGLIPI D R
Sbjct: 66 VEFDIRGIDPSMSNTLRRIMIAEVPQMAFDRVLIFNNTTLIQDEVLAHRLGLIPIKADFR 125
Query: 148 LFEYMSENDTSN-------------EKNTIVFKLHVLCERGGPRLT----VKTNELKWLP 190
F+ +E D ++ E ++++F V+ + V+++ELKW P
Sbjct: 126 QFKSRTEKDMTSIDCTKAAHVKGAKEDDSLLFHFKVIGKHQKNSTNHVQIVESSELKWSP 185
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
G++ + +++P F DITIA++ P Q I++E
Sbjct: 186 VGNQ---------------------KETMNVMPCFH--------DITIAKIKPKQFIDIE 216
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKT-CPVNVFDIEDIGSG 309
HA +GIG+ HAK+SPV TA+YR+LP I E + +DA ++ P V I D
Sbjct: 217 LHAFRGIGRDHAKFSPVCTAFYRLLPTIEFTEPIRGDDAVEVKSMFSPGTVEIIND---- 272
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
A V R RE R +++ V + R ++ +F++E+ GALSP +F E+ K+
Sbjct: 273 --EAKVVNVRVDANSREVFR-HKKYRDIVKLGRDREVALFSVETVGALSPCIIFKESCKV 329
Query: 370 LEDKCERVITELS 382
L +KC+ + EL+
Sbjct: 330 LMNKCDVFLEELT 342
>gi|396080763|gb|AFN82384.1| RNA polymerase I and III subunit AC40 [Encephalitozoon romaleae
SJ-2008]
Length = 305
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 36/300 (12%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
++ +++ + + +EFDL+ +D + ANA RRIL ++PTMA++ V + N SV DE +
Sbjct: 28 DDIEIKITEYSGERLEFDLVNVDCSFANALRRILCNDVPTMAVKDVFLKENESVFPDEFI 87
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
AHRLGLIP+ DP +FE++ + NE+N++ F L+V E + V ++++KW+P G
Sbjct: 88 AHRLGLIPLEADPEMFEFVEKE--LNERNSLRFVLNVTNE-SKDVMNVYSDDIKWIPFGG 144
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ + F S + + +L GQ+I E
Sbjct: 145 Q------------REALRNAKFCSG-----------------VLMFKLARGQKINAELVC 175
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
K IG+ HAKWSPV A YR++P ++ + DV DEDA KL K V D+ + G+ +A
Sbjct: 176 TKNIGRVHAKWSPVCPATYRLMP-LIEIGDVFDEDAYKLQKCFSEGVIDVR-LSDGRMKA 233
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
V PR T+ RE LR EE++ +V I R D+F+FTI S L P L +AV IL +K
Sbjct: 234 YVVNPRLDTMSREALR-HEEFKDKVFIGRRSDYFLFTINSV-FLDPLYLLKKAVSILIEK 291
>gi|325182041|emb|CCA16494.1| DNAdirected RNA polymerase II 36 kDa polypeptide A putative [Albugo
laibachii Nc14]
Length = 319
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 171/318 (53%), Gaps = 53/318 (16%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+VE++ L D ++F+L DA++ANA RR++IAE+PT+AI+ V I NTSV+ DE LAHR
Sbjct: 8 KVEILDLRDDFIKFELFETDASVANALRRVMIAEVPTLAIDLVTIEVNTSVMTDEFLAHR 67
Query: 137 LGLIPIIVDPRL------FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKW 188
LG+IP++ D L F Y + D ++ F+L V E+G L+V ++ LK
Sbjct: 68 LGMIPLLFDGGLEAFRQRFVYSQDCDCEEHCPNCSVEFQLDVRAEQG--MLSVTSDSLKS 125
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTS---FSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ +P +P ++S F+++QD + IA+LGPGQ
Sbjct: 126 V--------------DPYIRPVNFSSEEEFNNTQD-------------TGVIIAKLGPGQ 158
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVF 301
I L A A GIGK HAKW+PVA A + P+I L L E +L K+CP V+
Sbjct: 159 HIRLSAIAKLGIGKEHAKWAPVAVATFMYEPKITLNQAILSTYTPEQKAELYKSCPTEVY 218
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEW------EKRVSIRRVKDHFIFTIESTG 355
+ ++ ++ T+A C C EC++ + + V+I+ +D FIF++E+TG
Sbjct: 219 ETDE---NYEQFTIANHMRCMYCDECVKVVNSYKDNPEDDAAVTIQMQEDRFIFSVETTG 275
Query: 356 ALSPETLFTEAVKILEDK 373
L PE + A+ I+ +K
Sbjct: 276 QLKPEEVVICALDIIREK 293
>gi|168026615|ref|XP_001765827.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683004|gb|EDQ69418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 168/310 (54%), Gaps = 37/310 (11%)
Query: 81 IRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD ++F+L DA+IANA RRI+IAE+PT+AI+ V I +N+SV+ DE LAHRLGL
Sbjct: 14 IRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSSVLNDEFLAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IPI+ D + +S + D E +I F L V C G L V + +L
Sbjct: 74 IPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKC-TGDQTLDVTSLDL------- 125
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
S+PS P ++ + F +N R +L I +L GQE++L A A
Sbjct: 126 -------VSSDPSIIPVDAAGRAAD---MGGFESNDTRGIL---IVKLRKGQELKLRAIA 172
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT ++ PEI L+E + E+ ++ + + P VF+++ +
Sbjct: 173 RKGIGKDHAKWSPAATVTFQYEPEIHINEALMETLTLEEKQEWIDSSPTKVFELDPV--- 229
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
++ V P A T E L+ E K V I +D FIFT+ESTGA+ +F A+
Sbjct: 230 SQQVVVVDPEAYTYDEEVLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFLNAI 289
Query: 368 KILEDKCERV 377
+IL+ K + V
Sbjct: 290 EILKSKLDAV 299
>gi|312382270|gb|EFR27786.1| hypothetical protein AND_05113 [Anopheles darlingi]
Length = 259
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 133/237 (56%), Gaps = 40/237 (16%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+ F ++ V+R ++++EFD+IG++ AIAN FRR++++E+P+MAIEKV I NNTS+I
Sbjct: 34 FERFKQQLQIVVVRYEENELEFDMIGVNPAIANVFRRLMLSEVPSMAIEKVHIYNNTSII 93
Query: 129 QDEVLAHRLGLIPIIVDPRLFEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
QDEVLAHRLGLIP+ DPR+FEY +E D ++++ F+L V C R T TN
Sbjct: 94 QDEVLAHRLGLIPLRADPRMFEYKANETDPPTAQDSLEFELKVKCTRKNKDSTEVTNN-- 151
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+ R ++ +S I ++ PG E
Sbjct: 152 ------------------DNMYRNHSIYSGQ-------------------INKMRPGHEF 174
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
+++ AVKGIGK HAK+SPVAT YRMLP+I L + V DA L K V +I+
Sbjct: 175 DIKLFAVKGIGKDHAKFSPVATVSYRMLPDIQLTQPVIGNDARLLQKCFSPGVIEID 231
>gi|407407741|gb|EKF31429.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi marinkellei]
Length = 393
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 155/295 (52%), Gaps = 34/295 (11%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ M FD+ I IAN FRR+++ E+P +A +++LI N SV+ DE+LAHR+GL+PI
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDEILAHRIGLVPIAGP 160
Query: 146 PRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++++E+ D + + +VF+L R +V + +LKW P LP +
Sbjct: 161 VLKMQFVTESNQVGFDALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKP----LPGQ-- 214
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
++++ D F +P DI + +LGPGQ ++L A A+KGIG
Sbjct: 215 ------------EAWATGADEDRVFLVHP-----DIILTKLGPGQRLKLRAIALKGIGGV 257
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+PV+ +Y + I L E + + AEKL + CPV VF + + G + V
Sbjct: 258 HAKWTPVSVCFYELYTSIHLREPIRGDCAEKLQRICPVGVFGVNEEGESE----VVAVEN 313
Query: 321 CTLCRECLR--CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
CTLCRECLR E ++ + + K FTIES G L +F A+ + ++
Sbjct: 314 CTLCRECLRRDVYPEIADKIVVEKDKTRMRFTIESIGQLHASQIFRYALTLFAER 368
>gi|407847030|gb|EKG02938.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 156/295 (52%), Gaps = 34/295 (11%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ M FD+ I IAN FRR+++ E+P +A +++LI N SV+ DE+LAHR+GL+PI
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP 160
Query: 146 PRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++++E+ D + + +VF+L R +V + +LKW P LP +
Sbjct: 161 VLKMQFVTESNQVGFDALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKP----LPGQ-- 214
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
++++ D F +P DI + +LGPGQ ++L A A+KGIG
Sbjct: 215 ------------EAWATGADEDRVFLVHP-----DIILTKLGPGQRLKLRAIALKGIGGV 257
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+PV+ +Y + I L E + + A KL + CPV VF + + G + VA+
Sbjct: 258 HAKWTPVSVCFYELKTSIYLREPIRGDCATKLQRICPVGVFGVNEEGESE----VAEVEN 313
Query: 321 CTLCRECLR--CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
CTLCRECLR E ++ + + K FTIES G L +F A+ + ++
Sbjct: 314 CTLCRECLRRDVYPEIADKIVVEKDKTRMRFTIESIGQLHASQIFRYALALFAER 368
>gi|71656797|ref|XP_816940.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70882101|gb|EAN95089.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 156/295 (52%), Gaps = 34/295 (11%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ M FD+ I IAN FRR+++ E+P +A +++LI N SV+ DE+LAHR+GL+PI
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP 160
Query: 146 PRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++++E+ D + + +VF+L R +V + +LKW P LP +
Sbjct: 161 VLKMQFVTESNQVGFDALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKP----LPGQ-- 214
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
++++ D F +P DI + +LGPGQ ++L A A+KGIG
Sbjct: 215 ------------EAWATGADEDRVFLVHP-----DIILTKLGPGQRLKLRAIALKGIGGV 257
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+PV+ +Y + I L E + + A KL + CPV VF + + G + VA+
Sbjct: 258 HAKWTPVSVCFYELKTSIYLREPIRGDCATKLQRICPVGVFGVNEEGESE----VAEVEN 313
Query: 321 CTLCRECLR--CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
CTLCRECLR E ++ + + K FTIES G L +F A+ + ++
Sbjct: 314 CTLCRECLRRDVYPEIADKIVVEKDKTRMRFTIESIGQLHASQIFRYALALFAER 368
>gi|66801649|ref|XP_629750.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74851108|sp|Q54DH7.1|RPB3_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|60463138|gb|EAL61332.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 302
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 164/305 (53%), Gaps = 38/305 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ + D + F L D ++ANA RR++IAE+PTM I+ V +N SV+ DE +AHRL
Sbjct: 14 LEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFIAHRL 73
Query: 138 GLIPIIVDP-RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP++ D F Y + S+ ++ ++ +L+V C PR ++ L N +
Sbjct: 74 GLIPLVSDNIDKFCYTRDCSCSDRCDQCSVELRLNVKCTENRPRDVTSSDLLSQ--NSAV 131
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+P+ ++ TS +S Q +I I +L GQEI+L A A
Sbjct: 132 IPVSSQ-----------VTSSNSEQ---------------EIPIVKLRRGQEIKLRAIAK 165
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
KG+GK HAKWSP A Y+ P IVL ++++ D+ E+ V +CP V+ S +
Sbjct: 166 KGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQ 225
Query: 311 KRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
+ T+ P C C EC + E + K V + + +D FIFT+ES+GAL PE + A++
Sbjct: 226 Q-VTIEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQ 284
Query: 369 ILEDK 373
I++ K
Sbjct: 285 IIKRK 289
>gi|71423439|ref|XP_812461.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70877243|gb|EAN90610.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 156/295 (52%), Gaps = 34/295 (11%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ M FD+ I IAN FRR+++ E+P +A +++LI N SV+ DE+LAHR+GL+PI
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP 160
Query: 146 PRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
++++E+ D + + +VF+L R +V + +LKW P LP +
Sbjct: 161 VLKMQFVTESNQVGFDALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKP----LPGQ-- 214
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
++++ D F +P DI + +LGPGQ ++L A A+KGIG
Sbjct: 215 ------------EAWATGADEDRVFLVHP-----DIILTKLGPGQRLKLRAIALKGIGGV 257
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+PV+ +Y + I L E + + A KL + CPV VF + + G + VA+
Sbjct: 258 HAKWTPVSVCFYELKTSIYLREPIRGDCATKLQRICPVGVFGVNEEGESE----VAEVEN 313
Query: 321 CTLCRECLR--CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
CTLCRECLR E ++ + + K FTIES G L +F A+ + ++
Sbjct: 314 CTLCRECLRRDMYPEIADKIVVEKDKTRMRFTIESIGQLHASQIFRYALALFAER 368
>gi|255082502|ref|XP_002504237.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
gi|226519505|gb|ACO65495.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
Length = 331
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 167/313 (53%), Gaps = 22/313 (7%)
Query: 80 VIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
V +T+D ++F L G D +IANA RR++IAE+PT+AI+ V + N+S + DE +AHRLGL
Sbjct: 17 VQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSCLCDEFIAHRLGL 76
Query: 140 IPIIVDPRL-----FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
IP++ ++Y +++T + + +L V C V +N+L L NG
Sbjct: 77 IPLVSHKAADMEFPYDYAGDDETVTD---VPIELRVKCVSDQTE-DVTSNDL--LINGDY 130
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+T + R + ++S P + I I +L QEI + A
Sbjct: 131 TQYDTVKPVHYRPSGRAFGDATASG--APADGSQADGDKHPILILKLRKNQEINMRCVAR 188
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGK 310
KG+G+ HAKW PVATA YR PEI + ED + +E+ K V++ P VF D
Sbjct: 189 KGVGRDHAKWQPVATAVYRFEPEITINEDLMATLTEEEKIKFVESSPTPVFRYND---QT 245
Query: 311 KRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
++ V P + T ECL+ E+ K V IR +D F+FT+ESTGAL PET+ A+K
Sbjct: 246 RKVEVNMPESYTYDGECLKWAEDMGKPGLVDIRAKEDTFLFTVESTGALPPETIVLNALK 305
Query: 369 ILEDKCERVITEL 381
+L+ K E +EL
Sbjct: 306 VLDTKLEMTKSEL 318
>gi|256071190|ref|XP_002571924.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|353231403|emb|CCD77821.1| putative dna-directed RNA polymerase I [Schistosoma mansoni]
Length = 490
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 168/337 (49%), Gaps = 25/337 (7%)
Query: 56 GAYASMGVDNSLQLDHFCNNFRVEVIRLTK--DDMEFDLIGIDAAIANAFRRILIAELPT 113
G GV++ L F F VE+IR + D MEFD+I +D + ANA RRIL++E+P+
Sbjct: 16 GVLHHPGVEDRWSLSVFKKKFHVEIIRHGEESDTMEFDMINLDCSFANAVRRILVSEVPS 75
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE-------KNTIVF 166
+AIE+V ++ NTS++ DEV+ HRLGLIP+ VDP+ F + + +++ K +V+
Sbjct: 76 LAIERVYVSQNTSIMPDEVMCHRLGLIPLAVDPKYFLFPTRKPPASDDLSGFDPKEHLVY 135
Query: 167 KLHVLCERGGPRLTVKTNELK--WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE 224
L V K + K LP LP+ S + + +D
Sbjct: 136 DLCVGFTHSSKDSHNKPEKDKDDTLPVAQYLPV--------YSSDLKWIPLAGQEDHF-N 186
Query: 225 FSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+N PI I I +L G EIE AVKGIG+ HAK+SPVA A+Y+ P I LL +
Sbjct: 187 INNPPIPVSSTILINKLALGDEIEARCVAVKGIGRDHAKFSPVAAAYYKFHPIIKLLRTI 246
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
E E A KL K+ V I S +A V R RE +R E + + +
Sbjct: 247 EGEQAIKLQKSFASGVIGIN---SKTGQAFVDNARLDNGSREHMRHPEFRDDVIFVGMDS 303
Query: 345 DHFIFTIEST--GALSPETLFTEAVKILEDKCERVIT 379
H IFT+E+ G+ P +L A+ ++ KC +
Sbjct: 304 SHCIFTVETIAPGSRPPSSLVRCALGVMISKCSHYMA 340
>gi|300122175|emb|CBK22749.2| unnamed protein product [Blastocystis hominis]
Length = 312
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 161/312 (51%), Gaps = 37/312 (11%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N +E+ LT+D ++F L G+D +IAN RRI+IAE+P++AI V I NTSV+ D+ +A
Sbjct: 6 NKHIEITELTEDRLKFTLSGVDTSIANGLRRIMIAEVPSVAIRTVTIKENTSVLADDYIA 65
Query: 135 HRLGLIPI--IVDPRLFEYMSENDTS--NEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
HRLGLIPI + D E + + S ++++ +L+ C P L V + LK L
Sbjct: 66 HRLGLIPIRHLGDDSSTEIVDYFEVSAPGNRSSVRLELNETCTGDRP-LNVTSKHLKSL- 123
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
NP P + ++SQ +N IR I L PGQ + +E
Sbjct: 124 -------------NPYYAP----AHATSQAEALAQNNEGIR------IVSLAPGQTLHVE 160
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A+ G+GK HAKWSPV T + +P + L D+ D E +KLV +CP VF I
Sbjct: 161 CEAILGVGKEHAKWSPVGTVSMKYVPIVHLNRDLLDSKDFEFKQKLVDSCPRKVF---SI 217
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEW-EKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
R T+ AC C +C + +K V+I + + F F +E TGAL P + +
Sbjct: 218 NPDTNRVTIVNESACMFCGDCEAFNTSYADKIVTISQQPNVFKFVVEGTGALPPLEILKK 277
Query: 366 AVKILEDKCERV 377
A+++LE K R+
Sbjct: 278 ALEVLEMKLNRI 289
>gi|57965352|ref|XP_561116.1| Anopheles gambiae str. PEST AGAP012796-PA [Anopheles gambiae str.
PEST]
gi|55247027|gb|EAL42262.1| AGAP012796-PA [Anopheles gambiae str. PEST]
Length = 234
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 130/226 (57%), Gaps = 41/226 (18%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+ F ++ V+R ++++EFD+IG+ AIAN FRR++++E+P+MAIEKV I NNTS+I
Sbjct: 34 FESFKRKLQIVVVRYDENELEFDMIGV-TAIANVFRRLMLSEVPSMAIEKVHIYNNTSII 92
Query: 129 QDEVLAHRLGLIPIIVDPRLFEY-MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTN--- 184
QD LAHRLGLIP+ DPR+FEY +E D + +T+ F+L V C R T TN
Sbjct: 93 QDGGLAHRLGLIPLRADPRMFEYKANETDPPSALDTLEFELKVKCTRKNKDSTEVTNNEN 152
Query: 185 ----------ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML 234
++KW+P G++ + T+ P
Sbjct: 153 MYKNHSIYSGQIKWVPIGNQATIYTEATVGPIDD-------------------------- 186
Query: 235 DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
DI I+++ PG E +++ AVKG+GK HAK+SPVAT YR+LP+I L
Sbjct: 187 DILISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKL 232
>gi|330805244|ref|XP_003290595.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325079268|gb|EGC32876.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 303
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 172/328 (52%), Gaps = 41/328 (12%)
Query: 66 SLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNT 125
SL + ++++ + + + F L D ++ANA RR++IAE+PTM+I+ V N
Sbjct: 2 SLSVTQLTRQPELDILEIKNESIVFTLSNTDISVANALRRVMIAEVPTMSIDLVEFEANN 61
Query: 126 SVIQDEVLAHRLGLIPIIVDP-RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVK 182
SV+ DE +AHRLGLIP++ D F Y + S ++ ++ FKL+V C P + V
Sbjct: 62 SVLCDEFIAHRLGLIPLVSDNVDKFNYTRDCSCSERCDQCSVEFKLNVKCSNQRP-IDVT 120
Query: 183 TNELKWLP--NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIAR 240
+++L + N S +P+ ++ + RT D +P I +
Sbjct: 121 SSDLIVVSNNNNSVIPVSSQ------TTERT--------DEIP--------------IVK 152
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTC 296
L GQE+ L A A KG+GK HAKWSP A Y+ P + + ++++ D+ E+ V +C
Sbjct: 153 LRQGQELRLRAIAKKGVGKEHAKWSPSCIATYQFQPIVTINQNRMDELSDKQKEEWVGSC 212
Query: 297 PVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIEST 354
P VF + +V +P C C EC + E + K +SI + +D FIFT+ES+
Sbjct: 213 PTKVFGYSPHNQSQP-VSVDEPMRCMYCLECKKKAEAFGKPDLISIEQKQDKFIFTVESS 271
Query: 355 GALSPETLFTEAVKILEDKCERVITELS 382
G+L PE + A++I++ K + T+LS
Sbjct: 272 GSLKPEDIVLSAIQIIKAKLNSIQTQLS 299
>gi|162605758|ref|XP_001713394.1| DNA-directed RNA polymerase 40k chain [Guillardia theta]
gi|13794326|gb|AAK39703.1|AF083031_60 DNA-directed RNA polymerase 40k chain [Guillardia theta]
Length = 339
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 147/291 (50%), Gaps = 30/291 (10%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+D + +L GI + I N+ RR ++A++ T++IEKV I N++V DE+++HRLGL+PI +
Sbjct: 60 NDCKINLKGISSLIINSIRRTIMADVKTLSIEKVYIYKNSTVFGDEIISHRLGLVPIFIS 119
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
L + EN N+ N I+ ++++ + L + E L
Sbjct: 120 TELLR-IYENRAKNDPNIIINLDINNNIYNKTKISIFSEMLNLMYKSIEFDL-------- 170
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKW 264
+ N I P+ DI I ++ PGQEI E H + G HAK+
Sbjct: 171 -------------------YKNQLIFPVYRDILILKINPGQEIHCECHCLINSGLNHAKF 211
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
SPV T +YRM P + +L+++ D+ +K CP VF++E +G+ R V + CT C
Sbjct: 212 SPVGTIFYRMEPYVKILKEIISFDSSSFLKICPTGVFEVEKLGN-LSRIYVKNSKFCTFC 270
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
+EC++ + + + I R K IESTG SPE LF A+ +L K E
Sbjct: 271 KECIKMNFKSKCIIKIGRNKIKINLIIESTGVSSPENLFKRAIDLLIGKSE 321
>gi|339238573|ref|XP_003380841.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
gi|316976212|gb|EFV59540.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
Length = 277
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 167/330 (50%), Gaps = 74/330 (22%)
Query: 56 GAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMA 115
Y+ D + ++ + + +V+V+ + +M+ D + +DA NA RRIL+AE+PTMA
Sbjct: 15 NTYSITINDINWDVEKYAKHMKVKVMNIIDMEMQLDFVNVDAPFVNAIRRILLAEVPTMA 74
Query: 116 IEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHV---LC 172
IEKV + NT VI DEV AHRLGL+PI DPR F+Y ++++ E +T++F+L V +
Sbjct: 75 IEKVHMFQNTGVIADEVFAHRLGLLPIKADPRQFQYRTDDEPKAE-DTLIFELKVKSNVD 133
Query: 173 ERGGPRLTVKTNELKWLP-NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR 231
E R V ++ L+W P +G E + P P+ +
Sbjct: 134 EIENER--VCSSALEWKPIDGQEEKFKNCP-------PKV------------------VH 166
Query: 232 PMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK 291
P DI +A L GQEIE H KGIG+ HAK+SPVATA YR LPE+ L D DE+A K
Sbjct: 167 P--DILLAILKSGQEIECVCHCTKGIGRDHAKFSPVATASYRFLPELKFLRDFYDEEA-K 223
Query: 292 LVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTI 351
LV++ VF ++ C ++C + +
Sbjct: 224 LVQS----VF--------------SKDVVCL-----IKCED----------------VNV 244
Query: 352 ESTGALSPETLFTEAVKILEDKCERVITEL 381
ES G + E L EA+ I+ +KC R++ EL
Sbjct: 245 ESVGQYAVEELIVEAINIMINKCNRLLEEL 274
>gi|328868426|gb|EGG16804.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 296
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 164/314 (52%), Gaps = 42/314 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ L D + F L D ++ANA RRI+IAE+PTMAI+ V NTSV+ DE +AHRL
Sbjct: 11 LEILELKNDSITFVLSNTDISVANALRRIMIAEVPTMAIDLVEFQTNTSVLCDEFIAHRL 70
Query: 138 GLIPIIVDP-RLFEYMSENDTSNE--KNTIVFKLHVLC-ERGGPRLTVKTNELKWLPNGS 193
GLIP+ F Y E + + ++ F L+V C +R L V +++L+ N +
Sbjct: 71 GLIPLTSHKVESFNYTRECSCTERCTECSVEFNLNVKCLDRA---LEVTSSDLQS-QNDN 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
P+ S+ Y + S + I I RL GQE++L+A A
Sbjct: 127 VFPV--------SASDNVYGNTSGA-----------------IPIVRLRKGQEVKLKAIA 161
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KG+GK HAKW P A Y+ P+IV+ +++ D ++ + +CP NVF
Sbjct: 162 KKGVGKEHAKWIPTCIATYQFQPKIVVNQNRFDELSDRQKDEWISSCPTNVF---KYNPN 218
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ C C+EC++ E K VS+ + +D FIFT+E++GAL PE + +
Sbjct: 219 SMQQVTTDDLKCMFCQECVKKSEALGKPDLVSVEQKQDRFIFTVETSGALRPEEIVLAGI 278
Query: 368 KILEDKCERVITEL 381
+I+++K R+ T++
Sbjct: 279 QIIKEKLIRIQTQI 292
>gi|260803742|ref|XP_002596748.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
gi|229282008|gb|EEN52760.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
Length = 290
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 174/355 (49%), Gaps = 85/355 (23%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHF-----CNNFRVEVIRLTKD 86
+E RTRV I+T + + G YA G D++ L F + RV +
Sbjct: 4 LEQIRTRVTLTEHEVINTHSTDFPGNYA--GYDDTWSLAKFEEVKVPSEHRV----VEGS 57
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP 146
++EFD++GIDAAIANAFRRIL L +P +
Sbjct: 58 ELEFDMVGIDAAIANAFRRIL-----------------------------LAEVPTMAIE 88
Query: 147 RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
++F + NT + + VL R G +P+
Sbjct: 89 KVFVH---------NNTSIIQDEVLAHRLGL-----------------IPIH-------- 114
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
+ PR + + D+ P DI IA+L PGQE++L+ H VKGIG+ HAK+SP
Sbjct: 115 ADPRLF-EYRQEGDIKPVHD--------DILIAKLRPGQEMDLKLHCVKGIGRDHAKFSP 165
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LPEIVL E+V+ E A++LV+ V ++ + +G K+A V R T RE
Sbjct: 166 VATASYRLLPEIVLTEEVKGERADRLVRCFSPGVMEVTE-ENGVKKARVVNSRLDTCSRE 224
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
R + + V + +++DHFIF++ESTGAL+P+ L EA K+L KC + ++EL
Sbjct: 225 IFR-HPDLKDCVKLNKLRDHFIFSVESTGALAPDVLVCEATKVLMGKCRKFLSEL 278
>gi|281211628|gb|EFA85790.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 295
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 155/315 (49%), Gaps = 46/315 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ + D + F L D ++ANA RR++IAE+PTM I+ V N SV+ DE +AHRL
Sbjct: 11 LEILEIKNDSITFILSNTDISVANALRRVMIAEVPTMCIDLVEFEANNSVLVDEFIAHRL 70
Query: 138 GLIPII---VDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GLIP+ VD F Y + + + ++ FKL+ C
Sbjct: 71 GLIPLTSHKVDQ--FNYTRDCSCAERCDNCSVEFKLNARC-------------------- 108
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
N S T S D + ++ RP I I +L GQE++L A
Sbjct: 109 -----------NDHSYSVTSLDLLSQNDHVIPVGSSDGRPDTVIPIVKLHRGQEVKLRAI 157
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
A KG+GK HAKWSP A Y+ P+IV+ ++++ D E+ V++CP NV+
Sbjct: 158 AKKGVGKEHAKWSPACVATYQFQPKIVINQNRMDELTDRQKEEWVQSCPANVYQFN--AH 215
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+++ T+ C C EC + + K VSI + D FIF +E+ G+L PE + A
Sbjct: 216 QRQQVTIEDQMRCMFCMECKKKADSLGKPDLVSIEQKTDKFIFNVETNGSLKPEEVVLSA 275
Query: 367 VKILEDKCERVITEL 381
++I++ K + T+L
Sbjct: 276 IQIIKRKLTDIQTQL 290
>gi|403338254|gb|EJY68358.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 329
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 155/306 (50%), Gaps = 40/306 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++++ L+K ++F+L+ D ++AN+ RRI+IAE+PTMAI+ V + NTS + DE +AHRL
Sbjct: 38 IKILELSKYVIKFELLNTDLSVANSLRRIIIAEVPTMAIDLVEVVENTSALHDEFIAHRL 97
Query: 138 GLIPI-IVDPRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP+ D F++ + S++ ++ FKLH +C ++ V T + L S
Sbjct: 98 GLIPMQSFDVDKFQFSDKCACSSKCVNCSVQFKLHAVCS-DRDQMEVNTRHINPLSESSI 156
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+P+ P I I +L Q++++ A
Sbjct: 157 MPVHYVDSQGKEEDP--------------------------ILIMKLSKNQQLDMNLIAR 190
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV--EDEDAEK---LVKTCPVNVFDIEDIGSG 309
KG GK HAKWS VAT R P + + +D D D +K V TCP NV+ ++
Sbjct: 191 KGTGKLHAKWSSVATCQMRKEPIVEIDQDKINRDLDVQKRKEFVATCPRNVYKFNEM--- 247
Query: 310 KKRATVAQPRACTLCRECLRCGEE--WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + C LC EC+R + ++ V I ++ FIFT+ESTG L+PE + T A+
Sbjct: 248 RNAVEIEDADKCILCIECVRFAQANGLDRAVKIAEREEKFIFTVESTGVLAPEDIITRAL 307
Query: 368 KILEDK 373
IL K
Sbjct: 308 TILSHK 313
>gi|145528814|ref|XP_001450201.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417801|emb|CAK82804.1| unnamed protein product [Paramecium tetraurelia]
Length = 308
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 161/329 (48%), Gaps = 64/329 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+E++ L+ + +F G D +IANA RR++IAE+P MAI V I NTS + DE LA R
Sbjct: 13 RIEILELSDEKCKFSFEG-DLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 137 LGLIPII---VDPRLFEYMSENDT-SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LGLIP++ D +++++ ++ D+ ++K +VF L N
Sbjct: 72 LGLIPLVSYAADSKMYDWEADADSIDDQKTKVVFTLR-------------------QKNL 112
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN---NPIRPM----------LDITIA 239
++ PLE +SQ L PEF IRP+ + I I
Sbjct: 113 NDAPLEI-----------------TSQHLEPEFGQVGEMAIRPVRMFSPINGKEVGIPIT 155
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKT 295
RLG Q + + HA+KG GK HAKW+P+ A +R E+ + + + + + +
Sbjct: 156 RLGKNQSVHVRCHALKGFGKMHAKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDS 215
Query: 296 CPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIES 353
CP+NVF ++ + V C C EC+RC E +K + ++ K+ +IFT+ES
Sbjct: 216 CPMNVFAMD----ANQDLIVNAIEKCVFCEECIRCAESMKKPRLIKMQHKKNKYIFTVES 271
Query: 354 TGALSPETLFTEAVKILEDKCERVITELS 382
G L + +A+ +L K + + +LS
Sbjct: 272 AGQLKAADIVQKALIVLRKKVDEISQDLS 300
>gi|349592821|gb|AEP96149.1| RNA polymerase I polypeptide C, partial [Euplectes orix]
Length = 165
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 107/162 (66%), Gaps = 4/162 (2%)
Query: 220 DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIV 279
DL P+ P+ DI IA L PGQEI++ H VKGIGK HAK+SPVATA YR+LP+I
Sbjct: 2 DLFPDADFRPVHD--DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDIT 59
Query: 280 LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVS 339
LL+ +EDE AE L K V +I++I +GKK A VA R T RE R E + V
Sbjct: 60 LLQPIEDEAAETLQKCFSPGVIEIQNI-NGKKVARVANARLDTFSREVFR-HEGLKNLVR 117
Query: 340 IRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+ RV++H+IF++ESTG L P+ L +EA+KIL KC+R + EL
Sbjct: 118 LARVRNHYIFSVESTGILPPDVLVSEAIKILMGKCQRFLNEL 159
>gi|224105591|ref|XP_002313865.1| predicted protein [Populus trichocarpa]
gi|222850273|gb|EEE87820.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 159/310 (51%), Gaps = 36/310 (11%)
Query: 81 IRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD ++F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + S + D E ++ F L C +T +T ++
Sbjct: 74 IPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKC------ITDQTLDV------- 120
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
T D S FS D F + + I I +L GQE+ L A A
Sbjct: 121 -----TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQR--GIIIVKLRRGQELRLRAIA 173
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT + PEI + ED+ + E+ +++ P VFDI+ +
Sbjct: 174 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKV--- 230
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETLFTEAV 367
++ V P A T E ++ E KR + IR +D FIFT+ESTGA+ L A+
Sbjct: 231 TQQVVVVDPEAYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAI 290
Query: 368 KILEDKCERV 377
+IL+ K + V
Sbjct: 291 EILKQKLDAV 300
>gi|349915757|dbj|GAA27694.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Clonorchis
sinensis]
Length = 483
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 172/341 (50%), Gaps = 22/341 (6%)
Query: 47 IHTENVMY----SGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANA 102
+H + +Y G G + F + F V +I ++ D +EFD++ ID + ANA
Sbjct: 4 VHNSSALYELKEHGIINHPGTEEEWSAQIFRSKFEVSIIDMS-DTLEFDMVHIDCSFANA 62
Query: 103 FRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS----ENDTS 158
RRILIAE+P+++IE+V + NTSV+ DEVL HRLGLIP+ + PR + S E D
Sbjct: 63 LRRILIAEVPSISIERVYLFQNTSVMPDEVLCHRLGLIPLAIVPRHLIFPSRILPETDEL 122
Query: 159 NEKN---TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSF 215
E N ++F V ++ + +++ +++ S+L L + S S +
Sbjct: 123 TEFNPMEHVIFDFKVSFKKSDLKGCSESSGKEFI---SDLNLPSVRSSAVYSSELKWVPL 179
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
++L E + P I I +L G EIE AVKG+G+ HAK+SPVA A+Y+ L
Sbjct: 180 PGQEELFGEDQPTVVSP--HILINKLAVGDEIEARCVAVKGVGRDHAKFSPVAAAYYKFL 237
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWE 335
P I LL +E ++A L ++ V I+ ++A + R RE +R + +
Sbjct: 238 PVIKLLRPIEGDEARLLQRSFAHGVIGID---PKTEQAYILNARLDNGSREHMRHPQFRD 294
Query: 336 KRVSIRRVKDHFIFTIESTGALS--PETLFTEAVKILEDKC 374
V + H IFT+ES P L A++++ +KC
Sbjct: 295 DAVFVGVDSSHCIFTVESIAPSQRPPARLVRSAIEVMIEKC 335
>gi|294464103|gb|ADE77570.1| unknown [Picea sitchensis]
Length = 330
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 163/328 (49%), Gaps = 37/328 (11%)
Query: 63 VDNSLQLDHFCNNFRVEVIRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
+D Q+ F IR KDD M+F+L D +IANA RR++I E+PT+AI+ V I
Sbjct: 1 MDGQGQMSSSYQRFPTVKIREMKDDYMKFELKNTDPSIANALRRVMIGEVPTIAIDLVEI 60
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERG 175
+N+SV+ DE LAHRLGLIP+I + + S + D ++ FKL+V C+ G
Sbjct: 61 ESNSSVLNDEFLAHRLGLIPLISERAMDMRFSRDCDTCDGDAQCHYCSVEFKLNVKCD-G 119
Query: 176 GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD 235
L V + +L S+ P ++ ++ F + R
Sbjct: 120 DQTLDVTSLDL--------------VSSDMRENPVVAVDRAADMNV---FDASEQRG--- 159
Query: 236 ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEK 291
I I +L GQE+ L A A KGIGK HAKWSP AT + P+I L+E + ++ +
Sbjct: 160 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINENLMETLTLDEKRE 219
Query: 292 LVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIF 349
+++CP VFDI ++ V A + E ++ E K VSI D FIF
Sbjct: 220 WIESCPTKVFDIH---PDTQQVFVVDAEAYSYDDEVIKKAEAMGKPGLVSINAKDDSFIF 276
Query: 350 TIESTGALSPETLFTEAVKILEDKCERV 377
TIESTGAL + A+ IL+ K E V
Sbjct: 277 TIESTGALKASQMLLNAIDILKQKLETV 304
>gi|242048618|ref|XP_002462055.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
gi|241925432|gb|EER98576.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
Length = 328
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 155/313 (49%), Gaps = 29/313 (9%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 14 RVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 73
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + S + D S E ++ F L L V +N+L+ +
Sbjct: 74 LGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSNDLRSM- 132
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
P P + R Y D ++N R +L I +L GQE+ L
Sbjct: 133 ---------DPKVCPVDQARAYQQALGGTDPFGANTSNENRGIL---IVKLRRGQELRLR 180
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P+I L+E + E+ +L+++ P VF ++
Sbjct: 181 AIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERRRLIESSPTKVFKLD-- 238
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFT 364
+ V A T E ++ E K V I +D FIFT+E+TGA++ L
Sbjct: 239 --SANQVVVDNAEAYTYDDEVIKHAEALGKPGLVEINAKEDSFIFTVETTGAITAYELIM 296
Query: 365 EAVKILEDKCERV 377
A+ +L K + V
Sbjct: 297 NAITVLRQKLDAV 309
>gi|303281664|ref|XP_003060124.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458779|gb|EEH56076.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 333
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 167/317 (52%), Gaps = 27/317 (8%)
Query: 80 VIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
V LT + + F L+ D ++ANA RR++IAE+PT+AI+ V + NTS + DE +AHRLGL
Sbjct: 16 VQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEFIAHRLGL 75
Query: 140 IPIIVDPRL-----FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK-WLPNGS 193
IP++ + + ++Y ++++ + + F+L+ + V +N+L + P +
Sbjct: 76 IPLLSEKAVEMEFPYDYAGDDESVTD---VHFELNTGICASAETVDVTSNDLVCYDPRVA 132
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
P+ P + K + + P+ + P P + I +L GQ+I + A
Sbjct: 133 --PVNYHPGESIKGKGGAMEFEAQAAARGPD--DGPDIP--GVVIVKLRRGQQINMRCVA 186
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KG+G+ HAKW PVATA YR PEI L+ + +E+ V++ P +F ++
Sbjct: 187 RKGVGRDHAKWQPVATATYRFEPEITINEELMATLTEEEKMAFVESSPTALFRYDE---A 243
Query: 310 KKRATVAQP---RACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFT 364
+R V P R+ ECL+ EE K V IR +D F FT+ESTGAL PE +
Sbjct: 244 TRRVVVDAPDQARSYGYDGECLKKAEELGKPGLVDIRAKEDAFHFTVESTGALRPEEIVV 303
Query: 365 EAVKILEDKCERVITEL 381
A+K+LE K E EL
Sbjct: 304 NALKVLERKMEVTRGEL 320
>gi|226529628|ref|NP_001149261.1| LOC100282883 [Zea mays]
gi|195625852|gb|ACG34756.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Zea mays]
gi|223974247|gb|ACN31311.1| unknown [Zea mays]
gi|414588991|tpg|DAA39562.1| TPA: DNA-directed RNA polymerase II polypeptide A [Zea mays]
Length = 328
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 156/313 (49%), Gaps = 29/313 (9%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 14 RVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 73
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + S + D S E ++ F L V L V +N+L+ +
Sbjct: 74 LGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVTSNDLRSM- 132
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
P P + R Y D ++N R +L I +L GQE+ L
Sbjct: 133 ---------DPKVCPVDQARAYQHALGGTDPFGANASNENRGIL---IVKLRRGQELRLR 180
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P+I L+E + E+ L+++ P VF+++
Sbjct: 181 AIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERISLIESSPTKVFELD-- 238
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFT 364
+ V A T E ++ E K V I +D F+FT+E+TGA++ L
Sbjct: 239 --SANQVVVKNAEAYTYDDEVIKHAEAIGKPGLVEITAKEDSFVFTVETTGAITAYELIM 296
Query: 365 EAVKILEDKCERV 377
A+ +L K + V
Sbjct: 297 NAITVLRQKLDAV 309
>gi|429962182|gb|ELA41726.1| hypothetical protein VICG_01230 [Vittaforma corneae ATCC 50505]
Length = 298
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 162/313 (51%), Gaps = 42/313 (13%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
LD F NN ++++I T +EFD++ +IAN RRILI+++PTMAI V + N +V
Sbjct: 20 LDEFINNLQLKIISKTASSIEFDILNCHPSIANTLRRILISKVPTMAIHYVSVYENNTVF 79
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
DE +AHRLGLIP+ +P F Y + +T +N + F++ ++ L ++++++
Sbjct: 80 PDEYIAHRLGLIPLEANPEYFSYFKDEETF--ENVLNFRIDKTADKEPVNLM--SDDIEF 135
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
+P + QD FS R ++ + ++ PG ++E
Sbjct: 136 VP-------------------------AEGQD---HFS---FRFKPNVLVCKMVPGNQVE 164
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
+ A+KG G+ HAKWSPV+ YR++P+I+L +D EDA++L V +I +
Sbjct: 165 MTFKAIKGRGEQHAKWSPVSLCSYRIMPKIILEKDFYGEDAKELQACFSPGVIEIIN--- 221
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
+A VA PR ++ RE LR E+++ V I R F F +E T L P + ++
Sbjct: 222 --NKAVVANPRLESMSREALR-HEKFKDSVKILRESGWFCFNVE-TITLDPIQVLKMGLE 277
Query: 369 ILEDKCERVITEL 381
L C+ + E+
Sbjct: 278 ELIRSCKELKEEV 290
>gi|406694412|gb|EKC97739.1| hypothetical protein A1Q2_07938 [Trichosporon asahii var. asahii
CBS 8904]
Length = 278
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 144/325 (44%), Gaps = 86/325 (26%)
Query: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
+ G Y G D+S LD F RLT +EFDL+G+DA+IAN+ RR++IAE
Sbjct: 27 FPGHYP--GEDHSWNLDKFKE-------RLTPSTVEFDLVGVDASIANSLRRVMIAEC-- 75
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCE 173
R P DP+ Y S
Sbjct: 76 --------------------DRRRDAAPGETDPKKLYYDS-------------------- 95
Query: 174 RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM 233
V T +KW+P+G + SK + RP+
Sbjct: 96 ------NVYTGMMKWVPSGQQ-----------KSK----------------YKGKEPRPV 122
Query: 234 LD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
LD I + +L PGQ ++L A KG+G HAK+SPVATA YR+LP I+L E + ED EK
Sbjct: 123 LDDILLVKLRPGQMVDLHCFARKGVGADHAKYSPVATASYRLLPHIILREPIPLEDQEKF 182
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
V ++E G ++ V PR T RE LR +E++ +V + R++DHFIF +E
Sbjct: 183 KSCFAPGVIELEKDADGNQQVVVKNPRKDTASREVLRH-KEFQDKVELARIRDHFIFNVE 241
Query: 353 STGALSPETLFTEAVKILEDKCERV 377
S G PE L EA+KI+ K V
Sbjct: 242 SAGQYPPEELVPEAIKIMLSKISAV 266
>gi|115477954|ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA polymerase II [Oryza sativa Japonica
Group]
gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|215692481|dbj|BAG87901.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697124|dbj|BAG91118.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768432|dbj|BAH00661.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201657|gb|EEC84084.1| hypothetical protein OsI_30378 [Oryza sativa Indica Group]
gi|222641056|gb|EEE69188.1| hypothetical protein OsJ_28369 [Oryza sativa Japonica Group]
Length = 330
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 152/313 (48%), Gaps = 28/313 (8%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 15 RVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 74
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + S + D S E ++ F L L V +N+L+
Sbjct: 75 LGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSNDLR--- 131
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
T P P + R Y + F I I +L GQE+ L
Sbjct: 132 -------STDPKVCPVDQARAYQHALGGTE---PFDTAAAADQRGILIVKLRRGQELRLR 181
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + PEI L+E + E+ LV++ P VF+I+
Sbjct: 182 AIARKGIGKDHAKWSPAATVTFMYEPEIRINEELMETLTLEEKRNLVESSPTKVFNID-- 239
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFT 364
++ V A T E ++ + K + I +D FIFT+E+TGA++ L
Sbjct: 240 -PNTQQVVVEDAEAYTYDDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIM 298
Query: 365 EAVKILEDKCERV 377
A+ +L K + V
Sbjct: 299 NAITVLRQKLDAV 311
>gi|290972439|ref|XP_002668960.1| predicted protein [Naegleria gruberi]
gi|284082499|gb|EFC36216.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 168/340 (49%), Gaps = 63/340 (18%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N ++ ++ LT + +F L +D +IANA RRI+IAE+PT+AI+ V N+SV+ DE +
Sbjct: 9 NKAQLSILALTDEYCKFKLSNVDTSIANALRRIMIAEVPTLAIDLVEFEMNSSVLHDEFI 68
Query: 134 AHRLGLIPI-IVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
AHRLGLIP+ ++ F Y S+ + EK ++ LHV C +T +N+L
Sbjct: 69 AHRLGLIPLTCLNINSFSYTSDCSCTGHCEKCSVELTLHVKCTESHRDVT--SNDL---- 122
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+NPS P T + ++S+D E + ITI +L GQEI+L+
Sbjct: 123 ----------ISNNPSCAPCTLS--ATSRDNENEHNG--------ITIVKLKRGQEIKLK 162
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE------DVEDEDAE----------KLVK 294
A A KG+GK HAKWSPVA Y ++P+I + + D+D + K +
Sbjct: 163 AIAKKGVGKGHAKWSPVAITTYYIVPDIRIKGCQNTPVNPSDQDNQTEVPAADWIGKFIN 222
Query: 295 TCPVNVFDIEDIGSGKKRATVAQPRACTLCRECL---------RCGEEWEKRVSIRRV-- 343
+CP VF + + R + + CT C EC E++ VSI+
Sbjct: 223 SCPTKVFSV----TNDDRLIIDLDK-CTYCNECKDFVNDELIPNTSPEFKDFVSIKEKDL 277
Query: 344 --KDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
K FIFT+E+TG+ +PE + L K + EL
Sbjct: 278 GGKREFIFTVETTGSQTPENIVLLGFDTLVGKLAKTRAEL 317
>gi|356521566|ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 319
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 161/313 (51%), Gaps = 40/313 (12%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV++ L D +F+L DA+IANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 12 RVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 71
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L V C L V + +L
Sbjct: 72 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKC-MTDQTLDVTSKDLY--- 127
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+P+ P ++ S++ + NN I I +L GQE++L
Sbjct: 128 -----------SSDPTVSPVDFSDPSAT-----DSDNNR-----GIIIVKLRRGQELKLR 166
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + PEI + ED+ + E+ + V + P VF+I+ +
Sbjct: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPV 226
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFT 364
++ V A T E L+ E K V I +D FIFT+ESTGA+ L
Sbjct: 227 ---TQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVL 283
Query: 365 EAVKILEDKCERV 377
A++IL+ K + V
Sbjct: 284 NAIEILKQKLDAV 296
>gi|297832026|ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 159/310 (51%), Gaps = 40/310 (12%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + S + D E ++ F+L C L V + +L
Sbjct: 74 IPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVT-DQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +T SS+ D + I I +L GQE++L A A
Sbjct: 127 --------SADPTVTPVDFTIDSSASDSSEQKG---------IIIVKLRRGQELKLRAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEK--LVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT + P+I++ ED+ D D EK L+++ P VF I+ +
Sbjct: 170 RKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGIDPV--- 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
++ V P A T E ++ E K + I D FIFT+ESTGA+ L A+
Sbjct: 227 TRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAI 286
Query: 368 KILEDKCERV 377
IL+ K + V
Sbjct: 287 DILKQKLDAV 296
>gi|357154558|ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Brachypodium distachyon]
Length = 330
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 154/313 (49%), Gaps = 28/313 (8%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + L D +F+L DA++ANA RR++IAE+PT+AI+ V I +N+SV+ DE +AHR
Sbjct: 15 RVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFIAHR 74
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + S + D S E ++ F L L V +N+L+
Sbjct: 75 LGLIPLTSSGAMGMRFSRDCDACDGDGSCEHCSVEFHLAARATDANKTLEVTSNDLR--- 131
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
T P P + Y + D + + R +L I +L GQE+ L
Sbjct: 132 -------STDPKVCPVDQAMAYQQAIGTADPYDTSTASDHRGIL---IVKLRRGQELRLR 181
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDI 306
A A KGI K HAKWSP AT + P+I L+E + E+ V++ P VFDI+
Sbjct: 182 AIARKGIAKDHAKWSPAATVTFMYEPDIRINEELMETLTLEEKTSWVESSPTKVFDID-- 239
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFT 364
++ V A T E ++ E K + I +D F+FT+E+TGA++ L
Sbjct: 240 -PNTQQVVVVDREAYTYDDEVIKKAEAMGKPGLIEISAKEDSFVFTVETTGAITAYELII 298
Query: 365 EAVKILEDKCERV 377
A+ +L K + V
Sbjct: 299 NAITVLRQKLDAV 311
>gi|356576253|ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 320
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 162/313 (51%), Gaps = 39/313 (12%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV++ L D +F+L DA+IANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 12 RVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 71
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L V C L V + +L
Sbjct: 72 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKC-MTDQTLDVTSKDLY--- 127
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+P+ P ++ S++ P+ NN I I +L GQE++L
Sbjct: 128 -----------SSDPTVSPVDFSDPSATDS--PD--NNR-----GIIIVKLRRGQELKLR 167
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + PEI + ED+ + E+ + V + P VF+I+ +
Sbjct: 168 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPV 227
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFT 364
++ V A T E L+ E K V I +D FIFT+ESTGA+ L
Sbjct: 228 ---TQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVL 284
Query: 365 EAVKILEDKCERV 377
A++IL+ K + V
Sbjct: 285 NAIEILKQKLDAV 297
>gi|194374275|dbj|BAG57033.1| unnamed protein product [Homo sapiens]
Length = 150
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 98/131 (74%), Gaps = 6/131 (4%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y+ G D++ D F NFRV+V+ + ++ +EFD++GIDAAIANAFRRI
Sbjct: 24 VHTTD--FPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRI 79
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN--EKNTI 164
L+AE+PTMA+EKVL+ NNTS++QDE+LAHRLGLIPI DPRLFEY ++ + EK TI
Sbjct: 80 LLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGEKMKFWEKWTI 139
Query: 165 VFKLHVLCERG 175
++ V C+ G
Sbjct: 140 WVQILVDCDVG 150
>gi|408381888|ref|ZP_11179435.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
gi|407815336|gb|EKF85921.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
Length = 266
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 154/305 (50%), Gaps = 47/305 (15%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+E+ + + F + G+D ++ NA RRI + E+PT+AIE V N + I DE LAH
Sbjct: 1 MEIEIKNRENNHLIFTVDGVDVSMVNALRRISMVEVPTLAIETVEFLKNDARIFDEALAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ S + ++V CE R +V L
Sbjct: 61 RLGLVPL---------------STDTESMVMPEDCDCEGRCSRCSVS------------L 93
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
L+ K P+T S DL E SN I+P+LD I + +L G+E+ELEA A
Sbjct: 94 ILKGK-------GPKTLYS----GDLKSEDSN--IKPVLDTIPLVKLKEGEEVELEAIAQ 140
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G+G HAKW P T+ Y+ PEI + +D + E VK CP NV + ++ + T
Sbjct: 141 LGLGSDHAKWQPTTTSAYKHYPEITIDQD-KCEACLDCVKECPRNVLEYDE---KNNQIT 196
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
V C++CR C++ + +++ V+D FIF IE+ G+LSP + T A IL +K
Sbjct: 197 VVDLENCSMCRTCVK--DCQNNAITVEIVEDKFIFRIETDGSLSPIEVLTRACDILSEKA 254
Query: 375 ERVIT 379
++++T
Sbjct: 255 DKIVT 259
>gi|255555327|ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 318
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 157/313 (50%), Gaps = 40/313 (12%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+++ L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 11 RIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 70
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D + ++ F L C +T +T ++
Sbjct: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKC------ITDQTLDV---- 120
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
T D S FS S S I I +L GQE+ L
Sbjct: 121 --------TSKDLYSSDHTVVPVDFSDS-------SGYDSSEQRGIIIVKLRRGQELRLR 165
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P+I + ED+ + E+ + V++ P VFDI+
Sbjct: 166 AIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDID-- 223
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFT 364
++ V P A T E ++ E K V+I+ +D FIFT+ESTGA+ L
Sbjct: 224 -PNTQQVVVVDPEAYTYDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVL 282
Query: 365 EAVKILEDKCERV 377
A++IL+ K + V
Sbjct: 283 NAIEILKQKLDAV 295
>gi|410721684|ref|ZP_11361014.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
gi|410598430|gb|EKQ53003.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
Length = 266
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 148/305 (48%), Gaps = 47/305 (15%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+E+ D + F + G+D ++ NA RRI + E+PT+AIE V I N + I DE LAH
Sbjct: 1 MEIEIKTRENDQLIFTVEGVDVSMVNALRRISMVEVPTLAIETVEILKNDARIFDEALAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ D L + D E + C R L +K K L +G
Sbjct: 61 RLGLVPLTTD--LESLVPAEDCDCEGH---------CSRCSISLILKGKGPKTLYSG--- 106
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
DL E N ++P+LD I + +L G E+ELEA A
Sbjct: 107 ------------------------DLKSEDPN--LKPVLDTIPLVKLKEGDEVELEAIAQ 140
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G GK HAKW P T Y+ PEI + D + E VK CP NV + + + T
Sbjct: 141 LGFGKEHAKWQPTTTCAYKHYPEINIDLD-KCEACLDCVKECPRNVLEFNE---KNNQIT 196
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
V C++CR C++ + K +++ V+D FIF IE+ G+LSP + T A IL +K
Sbjct: 197 VVDLENCSMCRTCVK--DCQNKAITVEIVEDKFIFRIETDGSLSPTEVLTRACDILSEKA 254
Query: 375 ERVIT 379
++V+T
Sbjct: 255 DKVVT 259
>gi|302803341|ref|XP_002983424.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
gi|300149109|gb|EFJ15766.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
Length = 320
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 153/310 (49%), Gaps = 39/310 (12%)
Query: 81 IRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD ++F+L DA+IANA RR++IAE+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 13 IRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLNDEFIAHRLGL 72
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ D + S + D + +I F L V C S
Sbjct: 73 IPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKCT-------------------S 113
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
E L+ SS + S D P+ N I I +L GQE++L A A
Sbjct: 114 EETLDVTSHDLQSSDSQVVPVDSIGHD--PDIEN--FNQKKGILIVKLRKGQELKLRAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGI K HAKWSP AT ++ P+I L+E + E+ + V + P VF +I
Sbjct: 170 RKGIAKDHAKWSPAATVTFQYEPDIHINENLMETLSLEEKREWVDSSPTKVF---EINPE 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
++ V P A T E ++ E K V I +D FIFT+ESTGA+ +F A+
Sbjct: 227 TQQVEVVDPEAYTYDDEVIKKAEAMGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNAI 286
Query: 368 KILEDKCERV 377
+IL K + V
Sbjct: 287 EILRSKLDAV 296
>gi|357475219|ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation [Medicago truncatula]
gi|355508950|gb|AES90092.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
Length = 318
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 158/313 (50%), Gaps = 40/313 (12%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV++ L D M+F+L DA++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 11 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L V C +T +T L
Sbjct: 71 LGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKC------ITDQT-----LD 119
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+ + + P P S S I I +L GQE+ L
Sbjct: 120 VSSKDLISSDHTVTPVDVPGGDASIESDG--------------RGIIIVKLRRGQELRLR 165
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P+I + ED+ + E+ ++ V + P VFDI+ +
Sbjct: 166 AIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPV 225
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFT 364
++ V P A + E ++ E K + I +D FIFT+ESTGA+ L
Sbjct: 226 ---TQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLL 282
Query: 365 EAVKILEDKCERV 377
+++IL+ K + V
Sbjct: 283 NSIEILKQKLDAV 295
>gi|302754380|ref|XP_002960614.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
gi|300171553|gb|EFJ38153.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
Length = 320
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 153/310 (49%), Gaps = 39/310 (12%)
Query: 81 IRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD ++F+L DA+IANA RR++IAE+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 13 IRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLNDEFIAHRLGL 72
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ D + S + D + +I F L V C S
Sbjct: 73 IPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKCT-------------------S 113
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
E L+ SS + S D P+ N I I +L GQE++L A A
Sbjct: 114 EETLDVTSHDLQSSDSQVVPVDSIGHD--PDIEN--FNQKKGILIVKLRKGQELKLRAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGI K HAKWSP AT ++ P+I L+E + E+ + V + P VF +I
Sbjct: 170 RKGIAKDHAKWSPAATVTFQYEPDIHINENLMETLSVEEKREWVDSSPTKVF---EINPE 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
++ V P A T E ++ E K V I +D FIFT+ESTGA+ +F A+
Sbjct: 227 TQQVEVIDPEAYTYDDEVIKKAEAMGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNAI 286
Query: 368 KILEDKCERV 377
+IL K + V
Sbjct: 287 EILRSKLDAV 296
>gi|219121575|ref|XP_002181139.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407125|gb|EEC47062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 320
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 163/321 (50%), Gaps = 30/321 (9%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RVE++ + +++F L D ++AN RRI+IAE+PT+AI+ V N++V+ DE +AHR
Sbjct: 8 RVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDEYIAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLH--VLCERGGPRLTVKTN-ELKWLPNGS 193
+GLIP+ P E + +D S+ F H +C R +V+ ++ + G
Sbjct: 68 MGLIPVRYQPA--ESLKGSDCSD-----AFLPHRECVCYEHCMRCSVEFELDITYKVTGE 120
Query: 194 E---LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
E PL S+ + SQD E + + I +LGPGQ ++L+
Sbjct: 121 EDVLAPLTVTSKDLVSNNELVQPAHFLSQDEQDEAQDE------GVAIVKLGPGQRLKLK 174
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDI 306
A A GI K HAKW PVA A YR PEI + + + E ++LV TCP + +++++
Sbjct: 175 AIARMGISKEHAKWCPVAVATYRFWPEIHINDEQMATLTLEQKQELVDTCPDRILELDEV 234
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKR------VSIRRVKDHFIFTIESTGALSPE 360
+G RA CT + +KR V++ + KD FIF +E+TGA+ +
Sbjct: 235 -TGDIRAVDNAWDICTYTEDLKFAQAAMKKRPEDDDFVTVTQSKDRFIFNVETTGAMDAD 293
Query: 361 TLFTEAVKILEDKCERVITEL 381
+ A+++L ++ + EL
Sbjct: 294 EILLSAIRVLRNRLNYLAQEL 314
>gi|225428887|ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
vinifera]
Length = 318
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 156/314 (49%), Gaps = 49/314 (15%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + S + D E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKC-MTDETLDVTSKDL------- 125
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLD---ITIARLGPGQEIEL 249
SS ++P +FS++ D I I +L GQE+ L
Sbjct: 126 ---------------------ISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRL 164
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIED 305
A A KGIGK HAKWSP AT + PEI + ED+ + E+ V++ P VFDI+
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDID- 223
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLF 363
+ ++ VA A T E L+ E K V I +D FIFT+ESTGA+ L
Sbjct: 224 --ASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 281
Query: 364 TEAVKILEDKCERV 377
A+ +L+ K + V
Sbjct: 282 LNAIDVLKQKLDAV 295
>gi|147838054|emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 156/314 (49%), Gaps = 49/314 (15%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + S + D E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-MTDETLDVTSKDL------- 125
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLD---ITIARLGPGQEIEL 249
SS ++P +FS++ D I I +L GQE+ L
Sbjct: 126 ---------------------ISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRL 164
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIED 305
A A KGIGK HAKWSP AT + PEI + ED+ + E+ V++ P VFDI+
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDID- 223
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLF 363
+ ++ VA A T E L+ E K V I +D FIFT+ESTGA+ L
Sbjct: 224 --ASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 281
Query: 364 TEAVKILEDKCERV 377
A+ +L+ K + V
Sbjct: 282 LNAIDVLKQKLDAV 295
>gi|123448560|ref|XP_001313008.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121894876|gb|EAY00079.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 322
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 151/314 (48%), Gaps = 31/314 (9%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ V T + +EF L+ + ANA RR++IAE+PT+A++ V NTS + DE +AHR
Sbjct: 14 QIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAHR 73
Query: 137 LGLIPIIV-DPRLFEYMSENDTSNEK------NTIVFKLHVLCE-RGGPRLTVKTNELKW 188
L LIP + D F Y S+ + + T+++ + CE + V +N+LK
Sbjct: 74 LALIPFVSEDADKFFYHSQCNCDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDLKL 133
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
+ T + KP T F+N P +TI +L PGQ +
Sbjct: 134 IAPHKWADKSTMGSIHIGVKPATL------------FANGDSNPQ-PVTITKLAPGQTLR 180
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIE 304
L A+ KGIG+ HAKWSPV + Y + I E ++ ++ E++V +CP +
Sbjct: 181 LAAYIRKGIGRNHAKWSPVCVSTYHQVASIDFREAYKQIMDQKEKEEVVASCPKKCLKM- 239
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETL 362
VA CT C +C+R E + + I+ + F+F +E+ G+LSPE +
Sbjct: 240 ---GLDDNIQVANFEDCTFCNQCIRTAEVHGHKDAIVIQSKRGLFVFNVETIGSLSPENV 296
Query: 363 FTEAVKILEDKCER 376
T + L +K ++
Sbjct: 297 VTRGFQALTNKLDQ 310
>gi|449442251|ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cucumis sativus]
Length = 320
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 157/313 (50%), Gaps = 38/313 (12%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 11 KVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L C L V + +L +
Sbjct: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVTSKDL-YSS 128
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+ + +P++ FS S E + I I +L GQE+ L
Sbjct: 129 DHTVVPVD----------------FSDSAAATGEALDTK-----GIIIVKLRRGQELRLR 167
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P I + ED+ + E+ V++CP VF+++ +
Sbjct: 168 AIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTV 227
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETLFT 364
+ V P A T E ++ E K V I +D FIFT+ESTGA+ L
Sbjct: 228 ---THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLIL 284
Query: 365 EAVKILEDKCERV 377
A+ IL+ K + V
Sbjct: 285 NAIDILKQKLDAV 297
>gi|388505946|gb|AFK41039.1| unknown [Medicago truncatula]
Length = 318
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 158/313 (50%), Gaps = 40/313 (12%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV++ L D M+F+L DA++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 11 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L V R+T +T L
Sbjct: 71 LGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRV------KRITDQT-----LD 119
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+ + + P P S S I I +L GQE+ L
Sbjct: 120 VSSKDLISSDHTVTPVDVPGGDASIESDG--------------RGIIIVKLRRGQELRLR 165
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDI 306
A A KGIGK HAKWSP AT + P+I + ED+ + E+ ++ V + P VFDI+ +
Sbjct: 166 AIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPV 225
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFT 364
++ V P A + E ++ E K + I +D FIFT+ESTGA+ L
Sbjct: 226 ---TQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLL 282
Query: 365 EAVKILEDKCERV 377
+++IL+ K + V
Sbjct: 283 NSIEILKQKLDAV 295
>gi|146169387|ref|XP_001471367.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila]
gi|116575|sp|P16925.1|CNJC_TETTH RecName: Full=Conjugation stage-specific protein
gi|2654270|emb|CAA44194.1| RNA polymerase subunit [Tetrahymena thermophila]
gi|146145111|gb|EDK31657.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila
SB210]
Length = 310
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 154/310 (49%), Gaps = 35/310 (11%)
Query: 78 VEVIRLTKDDME-----FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
+E I+LT ++E F L D ++AN+ RRIL+AE+ T+AI V + NTS + DE
Sbjct: 1 MEGIKLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEY 60
Query: 133 LAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
+AHRLGLIP+ VD + + ++ TI F L R++ TNE+ +
Sbjct: 61 IAHRLGLIPLNSAKVDDYNYIWNCNCQGECDRCTIHFDL---------RVSNFTNEVLEV 111
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
+ L L+ + D R +S +D E+ N + + I I +L GQ+I
Sbjct: 112 ---TSLDLKQRQDHTDEDAVRPIKVYSILRD---EYGN---KREVGIPIIKLSKGQQIHF 162
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEK---LVKTCPVNVFDIEDI 306
E A KGIGK H+KW+PV + + + PEI+ +++++ D E+ LV CP VF I
Sbjct: 163 ECEAQKGIGKMHSKWNPVCISTFSVEPEIIFDQEIQNLDIEQKKALVNACPTKVF---GI 219
Query: 307 GSGKKRATVAQPRACTLCRECL-RCGEEWE--KRVSIRRVKDHFIFTIESTGALSPETLF 363
V C C EC+ +C E+++ K + I KD F F +E+TG + P +
Sbjct: 220 NPHTNTLEVQDHMKCMYCEECVYKCAEDFQKPKLIKIDHKKDKFFFKVETTGVMKPVEVL 279
Query: 364 TEAVKILEDK 373
L K
Sbjct: 280 RRGFSTLRQK 289
>gi|332030550|gb|EGI70238.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Acromyrmex
echinatior]
Length = 371
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 108/185 (58%), Gaps = 19/185 (10%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
MEFD+ G ++ NAFRR L++E+P+MAIEKV I NNTS+IQDEVLAHRLGLIP+ DPR
Sbjct: 1 MEFDISGCHTSLVNAFRRTLLSEVPSMAIEKVYIINNTSLIQDEVLAHRLGLIPLRADPR 60
Query: 148 LFEY----MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
LFEY +DT ++ +T+ ++L V C N P S LP + +S
Sbjct: 61 LFEYSPNDKKTDDTVSDNDTLRYELKVTC-----------NINPQAPKNSRLPEDMYKNS 109
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHA 262
SK + + +F I + DI I ++ PG EI L HAVKGIGK HA
Sbjct: 110 KVYSKDIKWVPIGRQAE---KFKAEQIGILENDILICKMRPGHEIHLFMHAVKGIGKDHA 166
Query: 263 KWSPV 267
K+SPV
Sbjct: 167 KFSPV 171
>gi|119719198|ref|YP_919693.1| RNA polymerase, insert [Thermofilum pendens Hrk 5]
gi|119524318|gb|ABL77690.1| DNA-directed RNA polymerase, subunit D [Thermofilum pendens Hrk 5]
Length = 283
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 147/297 (49%), Gaps = 41/297 (13%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
++ + F L A ANA RR LI+E+P +AI++V++ NTS + DE++AHRL L+P+ +
Sbjct: 6 QNRLVFMLRNTTPAFANALRRALISEVPILAIDEVIVTENTSALWDEMIAHRLALVPLKI 65
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPR-LTVKTNELKWLP-NGSELPLETKPD 202
DP ++ + + + ++F L E G R TV + L++ G+ LP E+
Sbjct: 66 DPETYDALRDLYEQGKDPQVIFSLE---EEAGERPRTVLSGHLRFEGIEGAPLPPESA-G 121
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
P SK +I I +LG GQ+I L A A G G+ HA
Sbjct: 122 IEPVSK--------------------------NIPILKLGKGQKISLTAIARMGTGRQHA 155
Query: 263 KWSPVATAWYRMLPEI-VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
KW PV Y+ P + +L ED+ +++A K++ TCP VF D + TV C
Sbjct: 156 KWQPVGPVGYKYKPVVRILREDLPEDEALKIISTCPRRVFGYVD-----GKLTVINEMQC 210
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVI 378
+LCRE C E++ V + + I T+ES G L PE L A +L K + +
Sbjct: 211 SLCRE---CEEKFPGIVEVDGDPSNIILTVESIGCLPPEKLLAVAADVLSKKLDNFL 264
>gi|297832024|ref|XP_002883894.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329734|gb|EFH60153.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 160/310 (51%), Gaps = 40/310 (12%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PT+AI+ V I N+SV+ DE +A RLGL
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTIAIDLVNIEVNSSVLNDEFIAQRLGL 73
Query: 140 IPIIVDPRL-FEYMSENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + + + D + E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMSMRFCQDCDACDGEGQCEFCSVEFPLSAKC-VTDQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +T SS+ D + ITI +L GQE++L+A A
Sbjct: 127 --------SADPTVTPVDFTIDSSASDSSEQKG---------ITIVKLRRGQELKLKAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEK--LVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT + P+I++ ED+ D D EK L+++ P VF I+ +
Sbjct: 170 RKGIGKDHAKWSPAATVTFMYEPDIIINEDLMDTLTDEEKIDLIESSPTKVFGIDPV--- 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
++ V P A T E ++ E K + I D F+FT+ESTGAL L A+
Sbjct: 227 TRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIYPKHDSFVFTVESTGALKASQLVLNAI 286
Query: 368 KILEDKCERV 377
IL+ K + +
Sbjct: 287 DILKQKLDAI 296
>gi|429328829|gb|AFZ80589.1| DNA-directed RNA polymerase II, putative [Babesia equi]
Length = 355
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 158/327 (48%), Gaps = 51/327 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ L +D M+F L+ D + ANA RRI+++E+P +AIE V + NTSV+ DE ++HRL
Sbjct: 12 IEIVELRQDRMDFVLLNSDVSTANAIRRIILSEIPALAIEIVTVLENTSVLHDEYISHRL 71
Query: 138 GLIPIIVDPRL---FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GL+PI D L FE+ + S++ K T+ + L V C+ ++ + +
Sbjct: 72 GLLPI--DSTLASEFEFREKCQCSDKCAKCTVDYTLDVSCDDADSKVVTHFDII-----A 124
Query: 193 SELPLETKPDSN-PSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
E + + + P PR ++F+ + D +P I +L GQ I ++
Sbjct: 125 DEAEINSNDERKIPMPIPRADISNFNGATDGIP--------------IVKLKRGQSISMK 170
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVF----- 301
A KG+GK HAKW VA Y+M P + L+E + ED + +CP NVF
Sbjct: 171 LTATKGLGKFHAKW-IVANVNYKMEPRFLFNSSLMEQISSEDKASIASSCPRNVFKFSGS 229
Query: 302 --DIEDIGSGKKRATVAQPRA---------CTLCRECLRCGEEWEKRVSIRRVKD--HFI 348
D I G + + C C EC+ E R IR D F
Sbjct: 230 RMDHTGISLGNSNSAIKLDEGGLQIINKLNCIYCDECINHARELGHRDLIRIEPDDSKFH 289
Query: 349 FTIESTGALSPETLFTEAVKILEDKCE 375
FTIESTG++ PE + A+ LE+K +
Sbjct: 290 FTIESTGSIPPEKILEIALSCLEEKMQ 316
>gi|15226523|ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
gi|11134646|sp|Q39211.1|RPB3A_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-A;
Short=RNA polymerase II subunit 3-A; Short=RNA
polymerase II subunit B3-A; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
gi|4544370|gb|AAD22281.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|17381018|gb|AAL36321.1| putative DNA-directed RNA polymerase II third largest subunit
[Arabidopsis thaliana]
gi|20465883|gb|AAM20046.1| putative DNA-directed RNA polymerase II [Arabidopsis thaliana]
gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
Length = 319
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 157/310 (50%), Gaps = 40/310 (12%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + S + D E ++ F+L C L V + +L
Sbjct: 74 IPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVT-DQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +T SS D I I +L GQE++L A A
Sbjct: 127 --------SADPTVTPVDFTIDSSVSDSSEHKG---------IIIVKLRRGQELKLRAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEK--LVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT + P+I++ ED+ D D EK L+++ P VF ++ +
Sbjct: 170 RKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPV--- 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
++ V P A T E ++ E K + I D FIFT+ESTGA+ L A+
Sbjct: 227 TRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAI 286
Query: 368 KILEDKCERV 377
+L+ K + V
Sbjct: 287 DLLKQKLDAV 296
>gi|340505295|gb|EGR31641.1| hypothetical protein IMG5_105540 [Ichthyophthirius multifiliis]
Length = 307
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 156/307 (50%), Gaps = 27/307 (8%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ + L + ++F L + A+AN+ RRIL+AE+ T+AI+ V + NTS + DE +AHR
Sbjct: 5 KITITDLQEQKVDFILENCEVALANSLRRILLAEVETIAIQNVKVYENTSCLPDEYIAHR 64
Query: 137 LGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT-NELKWLPNG 192
+GLIP+I VD + + + S+E C+R +K N+
Sbjct: 65 VGLIPLISANVDNFNYIWNCDCKGSSEGQE--------CDRCAVHFVLKVQNQGNTTMEV 116
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ L L+ K ++ R +S D + + + I I +L Q+I E
Sbjct: 117 TSLDLKEKFMNSDEDAVRPVKFYSIVPDQMGR------QQEVGIPIVKLSKNQQIHFECE 170
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED---EDAEKLVKTCPVNVFDIEDIGSG 309
A+KGIGK H+KWS V+ A +++ P I +D++ E +++V CPV V+ +I
Sbjct: 171 AMKGIGKMHSKWSAVSVASFKIEPLIKFSDDIQQLTREQKKQIVDCCPVKVY---EINQE 227
Query: 310 KKRATVAQPRACTLCRECL-RCGEEWE--KRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ +A + C C EC+ +C EE + K + I K+ FIF +E+TG L P + A
Sbjct: 228 NDQLEIANLQKCMFCDECVFKCEEEIKKPKLIKIDHNKNKFIFQVETTGVLKPVDVLNRA 287
Query: 367 VKILEDK 373
+ L++K
Sbjct: 288 FRALKEK 294
>gi|84489668|ref|YP_447900.1| DNA-directed RNA polymerase subunit D [Methanosphaera stadtmanae
DSM 3091]
gi|121731854|sp|Q2NFZ6.1|RPOD_METST RecName: Full=DNA-directed RNA polymerase subunit D
gi|84372987|gb|ABC57257.1| RpoD [Methanosphaera stadtmanae DSM 3091]
Length = 270
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 138/295 (46%), Gaps = 50/295 (16%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F + G+D N RRI + E+PT+AIE V I N + + DEVLAHRLGLIPI+ D +
Sbjct: 15 FVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHRLGLIPIVTDLDSY 74
Query: 150 EYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
SE D + + + F L CE G V + +LK
Sbjct: 75 VMPSECDCESGCQHCRVSFLLKEKCEEGNDSKIVYSKDLK-------------------- 114
Query: 208 KPRTYTSFSSSQDLLPEFSNNP-IRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S++P ++P+ D I I RL G+E+ELEA A G+G HAKW
Sbjct: 115 ------------------SDDPAVKPVYDTIPIVRLREGEEVELEAIAELGLGSEHAKWQ 156
Query: 266 PVATAWYRMLPEIVLLEDVED-EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
T Y+ P+I + D E D E+ V+ CP NV IED V C+ C
Sbjct: 157 ATTTCGYKYYPKIEI--DTEKVNDLEEYVEECPRNVLQIED-----DTLVVGNIENCSTC 209
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVIT 379
R C R E+ + + + + +IF IE+ G+L P + T A IL +K + +I
Sbjct: 210 RTCQRLSEKDDNAIVVDFEESKYIFKIETDGSLKPFDVLTIACDILSEKADNIIN 264
>gi|84999910|ref|XP_954676.1| DNA-directed RNA polymerase ii [Theileria annulata]
gi|65305671|emb|CAI73996.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
Length = 354
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 156/333 (46%), Gaps = 64/333 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV+ L KD M+F L+ D + ANA RR++++E+P++AIE V + NTSV+ DE ++HRL
Sbjct: 12 IEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISHRL 71
Query: 138 GLIPIIVDPRL---FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPN- 191
GL+PI D L FE+ +++ K T+ + L V C RL +P+
Sbjct: 72 GLLPI--DSTLASEFEFRDRCQCTDKCAKCTVDYTLDVSCNDSNSRLVT---HFDIVPDD 126
Query: 192 -------GSELPLETKPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
G LP+ PR T+F+ + D +P I +L
Sbjct: 127 THSKSIYGKNLPMPI---------PRADVTNFNGATDGIP--------------IVKLKR 163
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVN 299
GQ I ++ A KG+GK HAKW VA Y+M P L+E + ++ + +CP N
Sbjct: 164 GQSINMKLTASKGLGKFHAKWI-VANVNYKMEPRFSFNSALMEQLSSDEKAGIAASCPRN 222
Query: 300 VFDIEDIGS------GKKRAT---------VAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
VF + S G T V C C EC+ E + IR
Sbjct: 223 VFKYTGVRSENPSFLGHSDKTFKLDAGGLQVVNKLDCIYCDECINYCRELGHKDLIRIQP 282
Query: 345 DH--FIFTIESTGALSPETLFTEAVKILEDKCE 375
D F FTIESTG++ PE + A+ +LE K +
Sbjct: 283 DESKFHFTIESTGSIPPEKILEIALIVLEKKLQ 315
>gi|126465715|ref|YP_001040824.1| DNA-directed RNA polymerase subunit D [Staphylothermus marinus F1]
gi|126014538|gb|ABN69916.1| DNA-directed RNA polymerase, subunit D [Staphylothermus marinus F1]
Length = 280
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 143/286 (50%), Gaps = 39/286 (13%)
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS 158
+ N+ RR +IAE+PTMAI+ V+ N+SV DE +AHRLGLIP+ + L +Y S +
Sbjct: 24 VLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAALDKYKSPEE-- 81
Query: 159 NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS 218
C G R + +L LE K + + +S
Sbjct: 82 -------------CREAGDRGLFTEDCF------VKLDLEGKGEEGKLVTLHSGDLKTSD 122
Query: 219 QDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
D+ P + N P I LG QEI LEA+A G GK HAKWSPV+ A ++ + +I
Sbjct: 123 PDVKPVYDNIP--------IIVLGKNQEIRLEAYARLGRGKEHAKWSPVSVAAHKYIADI 174
Query: 279 VLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKR 337
+ E E+ +K ++ CP N+ E+ GK + C+LCR C EE+
Sbjct: 175 YIDEKKCLGENCKKCIEVCPRNILSFEN---GKIIVNTNKIFDCSLCRIC----EEYCPT 227
Query: 338 VSIRRV--KDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+IR ++ +I TIESTG+L P+ + EAVKILE+K + I L
Sbjct: 228 DAIRVGWRENEYILTIESTGSLPPKRILIEAVKILENKIDDFIENL 273
>gi|21593370|gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 156/310 (50%), Gaps = 40/310 (12%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHRLGL
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 73
Query: 140 IPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
I + + + S + D E ++ F+L C L V + +L
Sbjct: 74 ISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVT-DQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +T SS D I I +L GQE++L A A
Sbjct: 127 --------SADPTVTPVDFTIDSSVSDSSEHKG---------IIIVKLRRGQELKLRAIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEK--LVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT + P+I++ ED+ D D EK L+++ P VF ++ +
Sbjct: 170 RKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPV--- 226
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
++ V P A T E ++ E K + I D FIFT+ESTGA+ L A+
Sbjct: 227 TRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAI 286
Query: 368 KILEDKCERV 377
+L+ K + V
Sbjct: 287 DLLKQKLDAV 296
>gi|71031829|ref|XP_765556.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68352513|gb|EAN33273.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 354
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 157/333 (47%), Gaps = 64/333 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ L KD M+F L+ D + ANA RR++++E+P++AIE V + NTSV+ DE ++HRL
Sbjct: 12 IEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISHRL 71
Query: 138 GLIPIIVDPRL---FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPN- 191
GL+PI D L FE+ +++ K T+ + L V C+ R+ +P+
Sbjct: 72 GLLPI--DSTLASEFEFRDRCQCTDKCAKCTVDYTLDVSCKDSDSRVVT---HFDIVPDD 126
Query: 192 -------GSELPLETKPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
G LP+ PR T+F+ + D +P I +L
Sbjct: 127 THSKSIYGKNLPMPI---------PRADVTNFNGATDGIP--------------IVKLKR 163
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVN 299
G I ++ A KG+GK HAKW VA Y+M P L+E + E+ + +CP N
Sbjct: 164 GHSINMKLTASKGLGKFHAKWI-VANVNYKMEPRFSFNSSLMEQLSSEEKAGIAASCPRN 222
Query: 300 VFDIEDIGS------GKKRAT---------VAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
VF + S G T V AC C EC+ E + IR
Sbjct: 223 VFKYTGVRSEAPSFLGPSDKTFKLDAAGLHVVDKLACIYCDECINYCRELGHKDLIRIQP 282
Query: 345 DH--FIFTIESTGALSPETLFTEAVKILEDKCE 375
D F FTIESTGA+ PE + A+ +LE K +
Sbjct: 283 DESKFHFTIESTGAIPPEKILEIALVVLEKKLQ 315
>gi|159489602|ref|XP_001702786.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158280808|gb|EDP06565.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 275
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 151/296 (51%), Gaps = 47/296 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ V L D M F+L D + ANA RR ++AE+PT+AI+ V + NNT+V+ DE LAHRL
Sbjct: 15 ISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEFLAHRL 74
Query: 138 GLIPIIVD-----PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GLIP++ R FE+ +ND F L V+CE+ G + V +N+L
Sbjct: 75 GLIPLVSRNAVYWKRPFEWSGDNDIIE----TAFSLDVMCEQEGV-MDVTSNDL------ 123
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+PLE PD+ P Y S + +P I I +L GQ ++L A
Sbjct: 124 --VPLE--PDA--GVVPVNYHSATE-------------KP---IVICKLRRGQHLKLVAR 161
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
A KGIGK HAK+ PVATA ++ +I L + D+ D++ + V + P F I
Sbjct: 162 ARKGIGKDHAKFIPVATAVFQYKAQITLSASAMADMTDDEKQAFVHSDPSKTFKFNPI-- 219
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETL 362
+ V + EC+ E + V+IR+V+DHFIF +E TG L +++
Sbjct: 220 -TRMIEVENEESYMYDEECVVKARELGRPDLVTIRQVQDHFIFRVEGTGVLEVKSI 274
>gi|298705011|emb|CBJ28486.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 262
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 25/246 (10%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+VE++ L +D +EF L D ++ANA RR++IAE+PTMAI+ V I +N+SV+QDE L+HR
Sbjct: 8 QVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHR 67
Query: 137 LGLIPIIVDPRL-FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ DP + +EY + D + +K + VF L V ++ L +
Sbjct: 68 LGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKA---------LGRPEHMQ 118
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ P+ SS PR + D +N+ I I IA+L GQ ++L A A
Sbjct: 119 DQPVHVTSADLVSSDPRLRAVHFAPSDQ----TNSDISQDAGIIIAKLAKGQRMQLTAVA 174
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDIGSG 309
KGI K HAKWSPVA A Y+ P I + E+ E E + V+ CP V+ G
Sbjct: 175 KKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVY-----GRD 229
Query: 310 KKRATV 315
+K T+
Sbjct: 230 EKSGTI 235
>gi|294892119|ref|XP_002773904.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
gi|239879108|gb|EER05720.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
Length = 336
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 162/320 (50%), Gaps = 39/320 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV LT D ++F + + AIANA RRI+IAE+PT+AI+ V I N+S + DE +AHRL
Sbjct: 15 IEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVAHRL 74
Query: 138 GLIPI-------IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
GL+PI DP+ + S S T+ + L V+ E G V +++ +
Sbjct: 75 GLLPINSKEVDSYSDPKDCQCYS----SCPNCTVKYTLDVIAEDHG-VTDVTHLDIQPVD 129
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
G+ +P +P P RT T + ++ I IA+L Q++ +
Sbjct: 130 QGTSIPESRRPLPVPLWD-RTKTEEENRRN--------------GIVIAKLRRNQQLTMH 174
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE-----DAEKLVKTCPVNVFDIED 305
A KG+GK HAKW+P T R P I + +E E + + +V++CP V D++
Sbjct: 175 MEARKGVGKMHAKWNPTGTVAIRYEPVITIDRAIEYEKLSVAERKAIVRSCPKRVLDLD- 233
Query: 306 IGSGKKRATVAQPRACTLCRECL-RCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETL 362
R V + C C EC+ + +++ + +++++ D FT+ESTGA PE +
Sbjct: 234 ---AADRIQVVRKDLCDFCDECVTKANYDFKAKGMITVKQRTDVVHFTVESTGARPPEDI 290
Query: 363 FTEAVKILEDKCERVITELS 382
A+K+ ++K R+ +L
Sbjct: 291 VMAAIKVFKEKWIRLHEDLG 310
>gi|156082852|ref|XP_001608910.1| DNA-directed RNA polymerase II [Babesia bovis T2Bo]
gi|154796160|gb|EDO05342.1| DNA-directed RNA polymerase II, putative [Babesia bovis]
Length = 382
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 155/336 (46%), Gaps = 45/336 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++++ LT M F L+ D A AN+ RRI+++E+P++AIE V + NTSV+ DE +AHRL
Sbjct: 12 IDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTSVLHDEYIAHRL 71
Query: 138 GLIPI-IVDPRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLT-VKTNELKW----- 188
GL+PI R FEY + S++ + T+ + L V C +T N W
Sbjct: 72 GLLPIESSSARNFEYRDKCTCSDKCSRCTVEYSLDVKCMDDTRVVTHYDINLDSWENSRG 131
Query: 189 -------LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML------- 234
+P S L P S R +SS + NP P
Sbjct: 132 NVNAPMPVPRPSADALGNAPGDQGSDPQR----VNSSGNATARNVQNPDGPHTGAVDRKS 187
Query: 235 ------DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE- 287
I I +L GQ + L+ A KG+GK HAKW VA Y+M P I + V ++
Sbjct: 188 GSVPTGGIPIVKLKRGQCLSLKMTATKGLGKFHAKWM-VANVAYKMEPVITINRQVAEKM 246
Query: 288 ---DAEKLVKTCPVNVFDIEDIGSGKKRATVAQ-----PRACTLCRECLRCGEEWEKRVS 339
+ ++V++CP VF + + AT A+ C C ECL E R
Sbjct: 247 NLNEKTQIVQSCPRKVFKLSNPHGAYSTATKAEIVIDNNLNCIYCDECLNQAREMGYRDL 306
Query: 340 IRRVKDH--FIFTIESTGALSPETLFTEAVKILEDK 373
IR D F FTIES GA+SPE + + LE+K
Sbjct: 307 IRVQPDETKFHFTIESNGAISPEKILEICLDTLEEK 342
>gi|223998876|ref|XP_002289111.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
gi|220976219|gb|EED94547.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
Length = 297
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 158/323 (48%), Gaps = 58/323 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+VE++ + ++F L D ++AN RRI+IAE+PT+AI+ V + N+SV+ DE +AHR
Sbjct: 5 KVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYIAHR 64
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGL+PI +M+E +C PR V E
Sbjct: 65 LGLVPI-------RFMAEGSLK----------ECVCYDRCPRCCV------------EFE 95
Query: 197 LETKPDSNPSSKPRTYTSFS---SSQDLLPEFSNNPIRPML-------------DITIAR 240
L+ D ++P T + +S+DL+ +N + P I+I +
Sbjct: 96 LDVNFDKVNQTRPDTERDLALTVTSRDLIS--NNMLVSPAHFLNEEEQDESHDEGISIVK 153
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTC 296
LGPGQ ++L+A A GI K HAKW PVA A YR P I + E+ + E ++LV+ C
Sbjct: 154 LGPGQHLKLKAIARMGISKEHAKWCPVAVATYRFWPIITINEEACNMLTLEQKQELVEAC 213
Query: 297 PVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKR------VSIRRVKDHFIFT 350
P + ++++I +G A T + +KR V++ + D F+F+
Sbjct: 214 PDRILELDEI-TGNLVAVENAYEMATFTEDLKTVQNAMKKRPEDDDFVNVVQSTDRFVFS 272
Query: 351 IESTGALSPETLFTEAVKILEDK 373
+ESTGA+ E + ++++L+D+
Sbjct: 273 VESTGAMDAEEILLSSLRVLKDR 295
>gi|355570776|ref|ZP_09042046.1| DNA-directed RNA polymerase subunit D [Methanolinea tarda NOBI-1]
gi|354826058|gb|EHF10274.1| DNA-directed RNA polymerase subunit D [Methanolinea tarda NOBI-1]
Length = 281
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 148/314 (47%), Gaps = 57/314 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++R+ F L G A ANAFRR +I E+PT+AIE V I +NTS + DE+LAHRL
Sbjct: 3 IEILRMDDSQARFCLSGPSQAFANAFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAHRL 62
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIPI +P L+ + E C+R G T+ E P
Sbjct: 63 GLIPIKTEPGLYVPQDKCSCGGEG----------CDRCGVAFTLSV----------EGP- 101
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKG 256
S+DL+P+ + P +D I I +LG Q++ LEA AV
Sbjct: 102 ----------------GMVYSRDLIPQ--DPRAVPAVDTIPIVKLGKDQKVVLEARAVLN 143
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G+ HAKW P ++ P I DV + + + V CP ++ ++ + R T
Sbjct: 144 CGRVHAKWQPTTACGFKNYPVI----DVSNRCDGCGRCVDECPRSILEVRN-----GRVT 194
Query: 315 VAQPR--ACTLCR----ECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
V + R C+LCR C+ G E ++I K FIF +E G+L + T A+K
Sbjct: 195 VIENRLEECSLCRLCEKACMSTGIGEEPAITITSEKSRFIFVVEGDGSLPVGDIITGALK 254
Query: 369 ILEDKCERVITELS 382
L+D+ + + ++S
Sbjct: 255 YLKDQSDELRAQVS 268
>gi|349806155|gb|AEQ18550.1| putative polymerase i polypeptide subunit [Hymenochirus curtipes]
Length = 159
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 97/133 (72%), Gaps = 6/133 (4%)
Query: 47 IHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRI 106
+HT + + G Y + D++ + F NF ++++ + D +EFD++GIDAA+AN FRRI
Sbjct: 13 VHTTD--FPGNYYNF--DDTWDQEKFEKNFHIDIVNMEGDTLEFDMVGIDAAVANTFRRI 68
Query: 107 LIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT-SNEKNTIV 165
L+AE+PT+A+EKVL+ NNTS+IQDE+LAHRLGLIPI DPRLFE+ + ++ E +T+
Sbjct: 69 LLAEVPTVAVEKVLVYNNTSIIQDEILAHRLGLIPIRADPRLFEFRNTDEGDGTEIDTLQ 128
Query: 166 FKLHVLCERGGPR 178
F+L+V C R PR
Sbjct: 129 FELNVKCTR-NPR 140
>gi|297527612|ref|YP_003669636.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
gi|297256528|gb|ADI32737.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
Length = 280
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 140/284 (49%), Gaps = 35/284 (12%)
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS 158
+ N+ RR++IAE+PTMAI+ V+ N+SV DE +AHRLGLIP+ + L +Y S +
Sbjct: 24 VLNSIRRVVIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAALDKYKSPEECK 83
Query: 159 NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS 218
+ +F +L LE K + + +S
Sbjct: 84 EASDRGLFTEDCFV---------------------KLDLEGKGEEGKLVTLHSGDLKTSD 122
Query: 219 QDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
D+ P + N P I LG QEI LEA+A G GK HAKWSPV+ A ++ + +I
Sbjct: 123 PDVKPVYDNIP--------IIVLGKNQEIRLEAYARLGRGKEHAKWSPVSIAAHKYIADI 174
Query: 279 VLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKR 337
+ E E+ +K V+ CP N+ ++ GK + C+LCR C +
Sbjct: 175 HIDEKKCLGENCKKCVEVCPRNILSFKN---GKITVNRDRIFDCSLCRICEEYCPAGAIK 231
Query: 338 VSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
V R ++ +I TIESTG+L P+ + EAVKILE+K + I L
Sbjct: 232 VGWR--ENEYILTIESTGSLPPKRILIEAVKILENKIDDFIENL 273
>gi|308800116|ref|XP_003074839.1| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
gi|119358805|emb|CAL52099.2| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
Length = 301
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 155/318 (48%), Gaps = 47/318 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V V RL + F L G+D ++ANA RR++IA++PT+AI+ V + N+SV+ DE LAHR
Sbjct: 10 HVSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHR 69
Query: 137 LGLIPI-------IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
LGLIP+ + P +EYM E+D++ + + +L+V C
Sbjct: 70 LGLIPLSSKKVSELFKP--YEYMGEDDSATD---VHLELNVRC---------------LT 109
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
++ E + KP T+ S + +P I I +L Q++ L
Sbjct: 110 EQAMDVTSEDMVSYDERVKPITFQGTVS----------DAAKPG-GILIVKLRNKQQLLL 158
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIED 305
+ A KG GK HAKWSPVATA ++ P + LL+ + D +V++ P +F +
Sbjct: 159 KCIARKGTGKDHAKWSPVATAVFKHDPVVHVNQELLKTLSGSDKRAIVESDPSQMFKYD- 217
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETLF 363
+ ++ +CT E ++ E K + IR D F F +ESTG L E +
Sbjct: 218 --ADLDTISLTSTGSCTFDGEIVKKVNEMGKHGLIDIRPCFDSFTFHVESTGVLDAEEIV 275
Query: 364 TEAVKILEDKCERVITEL 381
+AV IL+ K + V EL
Sbjct: 276 LQAVHILQTKLDTVGGEL 293
>gi|333987645|ref|YP_004520252.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
gi|333825789|gb|AEG18451.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
Length = 278
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 144/306 (47%), Gaps = 51/306 (16%)
Query: 77 RVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
+++V KDD + F + G+D NA RRI E+PT+AIE V I N + I DE LA
Sbjct: 13 KMDVTIKNKDDNLLVFTVEGVDVPFINAIRRICTVEVPTLAIEDVDIYKNDAKIFDEALA 72
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HRLGLIP+ D SE D CE PR +V S
Sbjct: 73 HRLGLIPLTTDLESMVLASECD---------------CEDHCPRCSV-----------SL 106
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHA 253
L E P + Y+ SQD P+ ++P D I I +L G+E+ELEA A
Sbjct: 107 LLKEKGPKT-------VYSKDLKSQD--PQ-----LKPTYDTIPIMKLKDGEEVELEAIA 152
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED-EDAEKLVKTCPVNVFDIEDIGSGKKR 312
GIG HAKW P Y+ P+I + D E E K V+ CP + + +D +
Sbjct: 153 QLGIGLEHAKWQPTTACAYKYYPKITI--DAEKCESCAKCVEECPRGILEFDD---ENNK 207
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ C++C+ C++ E +++ + FIF IE+ G+L PE + T A IL
Sbjct: 208 VNILDIENCSMCKTCVKGCE--SDAITVEGQEGKFIFKIETDGSLPPEEVLTRACDILSG 265
Query: 373 KCERVI 378
K +++I
Sbjct: 266 KTDQII 271
>gi|365757905|gb|EHM99776.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 224
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 21/226 (9%)
Query: 152 MSENDTSNEKNTIVFKLHVLCERG--GPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
+ +++ ++NTIV L+V C R P+ EL + L+ +P
Sbjct: 9 LPDDEKFTDENTIVLSLNVKCTRNPDAPKDCTDPKELYNNAHVYARDLKFEPQG------ 62
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
R T+F++ S P P DI +A+L PGQEI L+AH + GIG HAK+SPV+T
Sbjct: 63 RQSTTFAAC-------SVVPADP--DILLAKLRPGQEISLKAHCILGIGGDHAKFSPVST 113
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
A YR+LP+I +L+ ++ E A++ K P V I++ + A V R T+ RE LR
Sbjct: 114 ASYRLLPQINILQSIKGESAKRFQKCFPPGVIGIDETS---REAYVKDARKDTVSREVLR 170
Query: 330 CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
EE+ +V + RV++HFIF +ES GA++PE +F ++V+IL++K E
Sbjct: 171 Y-EEFADKVKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAE 215
>gi|340058077|emb|CCC52431.1| putative DNA-directed RNA polymerase, alpha subunit [Trypanosoma
vivax Y486]
Length = 389
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 150/313 (47%), Gaps = 50/313 (15%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
C RVE I FD+ + IAN FRR+++ E+P +A +++LI N S++ DE+
Sbjct: 92 CTTRRVETI-------TFDMDHVSPPIANMFRRLMLTEVPVLAFDRILIEENDSIMPDEL 144
Query: 133 LAHRLGLIPIIVDPRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GL+P+ Y++++ D + ++F+L V RG +V + +LK
Sbjct: 145 LAHRIGLVPVAGPVSRIHYVTDSQQISFDALDPTRVLLFELDVEGRRGVQATSVYSGDLK 204
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
W P S+ P T S D + F +P DI + RLGPGQ +
Sbjct: 205 WRPLPSQEPWGT----------------GQSDDRV--FLVHP-----DIVLTRLGPGQRL 241
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A A+KGIG HAKW+PV+ +Y M+ E+ +++ + ++KL ++ G
Sbjct: 242 KLRAIALKGIGAVHAKWAPVSACYYEMMTEVDPVDETACDQSKKLKS--------LDAAG 293
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEK------RVSIRRVKDHFIFTIESTGALSPET 361
+ + + C R + EK V +R+ K FT+ES G L
Sbjct: 294 ASTSHHGIQERPDSDGCMPSQRP-QSHEKPGDVLGEVLVRKDKTRVRFTVESVGQLHAAQ 352
Query: 362 LFTEAVKILEDKC 374
+F A+++ ++
Sbjct: 353 VFRSALQLFSERV 365
>gi|296243119|ref|YP_003650606.1| DNA-directed RNA polymerase subunit D [Thermosphaera aggregans DSM
11486]
gi|296095703|gb|ADG91654.1| DNA-directed RNA polymerase, subunit D [Thermosphaera aggregans DSM
11486]
Length = 277
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 144/289 (49%), Gaps = 36/289 (12%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
GI + N+ RR++I+E+PTMAI+ V N+SV DE LAHRLGLIP+ D L++Y S
Sbjct: 19 GISLHLLNSIRRVIISEVPTMAIDYVAFMENSSVFYDEYLAHRLGLIPLTSDQALWKYKS 78
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+ +F E RL+++ G + + D+ SS P
Sbjct: 79 PEECREAGEKGLFS-----EDCFVRLSLEG-------EGGDEAVTLYSDNLVSSDP---- 122
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
D+ P F P I +L Q+++LEA+A G GK H KWSPV+ A ++
Sbjct: 123 ------DVKPSFGKIP--------IVKLIKPQKVKLEAYARLGRGKEHIKWSPVSVAAHK 168
Query: 274 MLPEIVLLEDV-EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGE 332
+P I++ + + E+ K V+ CP VF + SG+ + + CT+C+ C
Sbjct: 169 YVPNILVNQRLCRGEECLKCVEACPKEVFAFQ---SGEVKVRSDKLLDCTMCKLCENLCP 225
Query: 333 EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+VS +D FI T+E TGALS + E+V+ILE K + + L
Sbjct: 226 SGAVKVS--HEEDEFILTLELTGALSARNVLLESVRILEKKLDDFVETL 272
>gi|145506343|ref|XP_001439135.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406313|emb|CAK71738.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 148/325 (45%), Gaps = 67/325 (20%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+E++ L+ + +F G D +IANA RR++IAE+P MAI V I NTS + DE LA R
Sbjct: 13 RIEILELSDEKCKFSFEG-DLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L I + + ++K +VF L N ++ P
Sbjct: 72 LAKCMI-------GKLMQIPLDDQKTKVVFTLR-------------------QKNLNDAP 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSN---NPIRPM----------LDITIARLGP 243
LE +SQ L PEF IRP+ + I I RLG
Sbjct: 106 LEI-----------------TSQHLEPEFGQVGEMAIRPVRMFSPINGKEVGIPITRLGK 148
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVN 299
Q + + HA+KG GK HAKW+P+ A +R E+ + + + + + +CP+N
Sbjct: 149 NQSVHVRCHALKGFGKMHAKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMN 208
Query: 300 VFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGAL 357
VF ++ + V C C EC+RC E +K + ++ K+ +IFT+ES G L
Sbjct: 209 VFAMD----ANQDLIVNAIEKCVFCEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQL 264
Query: 358 SPETLFTEAVKILEDKCERVITELS 382
+ +A+ +L K + + +LS
Sbjct: 265 KAADIVQKALIVLRKKVDEISQDLS 289
>gi|302833623|ref|XP_002948375.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
gi|300266595|gb|EFJ50782.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
Length = 272
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 141/284 (49%), Gaps = 53/284 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
M F+L D + ANA RR++IAE+PT+AI+ V + NNT+V+ DE LAHRLGL+P++
Sbjct: 1 MVFELKNTDVSSANALRRVMIAEVPTIAIDLVEMENNTTVLNDEFLAHRLGLLPLVSTEA 60
Query: 146 ---PRLFEYMSENDTSNEKNTI--VFKLHVLCERGGPRLTVKTNELKWL-PNGSELPLET 199
R FE+ SN+ + I F L V C G + V +N+L L P P+
Sbjct: 61 VAWKRPFEW------SNDADMIETAFSLDVTCTVDG-VMDVTSNDLVPLNPEHGVFPVNY 113
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+ NP KP I I ++ GQ+++L A A KGIGK
Sbjct: 114 Q---NPDEKP--------------------------IVICKMRRGQQLKLVARARKGIGK 144
Query: 260 THAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
HAK+ PVATA ++ P IVL + ++ DE+ + V + P F I + V
Sbjct: 145 DHAKFIPVATAVFQYKPRIVLSHSAMAEMTDEEKQIFVHSDPSKTFKFNPI---TRMIEV 201
Query: 316 AQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGAL 357
A ECL E + V+I +++DHFIF +E TG L
Sbjct: 202 ENEEAYMYDEECLVKARELGRPDLVTITQLQDHFIFRVEGTGVL 245
>gi|403220422|dbj|BAM38555.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 354
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 156/325 (48%), Gaps = 48/325 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ L KD M+F L+ D + ANA RRI+++E+P++AIE V + NTSV+ DE ++HRL
Sbjct: 12 IEIVDLRKDRMDFILLNSDVSTANAIRRIILSEIPSLAIEIVTVLENTSVLHDEYISHRL 71
Query: 138 GLIPIIVDPRL---FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GL+PI D L FE+ + +++ + T+ + L V C R+ +P+
Sbjct: 72 GLLPI--DSTLASEFEFRDKCQCTDKCARCTVDYTLDVSCNDSDSRVVT---HFDIVPDE 126
Query: 193 SELPLETKPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
S+ + P PR T+F+ D +P I +L G I ++
Sbjct: 127 SQ-SQSIYGKNLPMPIPRADATNFNGGTDGIP--------------IVKLKRGHSINMKL 171
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVF------ 301
A KG+GK HAKW V Y+M P ++E + E+ + +CP VF
Sbjct: 172 TATKGLGKFHAKWI-VGNVNYKMEPRFSFNSSIMEQLTSEEKAGIAASCPRGVFKYTGVR 230
Query: 302 -DIE-DIGSGKKR-------ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH--FIFT 350
D+E +GS K VA C C EC+ E + IR D F FT
Sbjct: 231 SDMEPGLGSSDKSFKLNVGGLQVANKLNCIYCDECINYCRELGHKDLIRIQPDESKFHFT 290
Query: 351 IESTGALSPETLFTEAVKILEDKCE 375
IESTG++ PE + A+ LE K +
Sbjct: 291 IESTGSIPPEKILDIALLCLEKKLQ 315
>gi|320101538|ref|YP_004177130.1| DNA-directed RNA polymerase subunit D [Desulfurococcus mucosus DSM
2162]
gi|319753890|gb|ADV65648.1| DNA-directed RNA polymerase, subunit D [Desulfurococcus mucosus DSM
2162]
Length = 280
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 141/307 (45%), Gaps = 35/307 (11%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++++I T ++ L GI + N+ RR +I+E+PTMA++ V I N+SV DE +AH
Sbjct: 1 MQLDIIEKTPYTIKLHLKGIPLHVVNSLRRTIISEVPTMAVDYVAITENSSVFYDEYIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ D L +Y + + VF RL K E L SE+
Sbjct: 61 RLGLIPLKSDEALHKYKPPEECAEAGEKGVFSQDCF---ATLRLEAKGPEDGVLTIYSEM 117
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
LE SS D+ P + P + RL Q I LEA+A
Sbjct: 118 -LE-----------------SSDPDVTPVYGKVP--------VVRLTRNQSIRLEAYARL 151
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G GK HAKWSPV+ A ++ +P I + E + + TCP VF+ K
Sbjct: 152 GRGKEHAKWSPVSVATHKYIPVITVNAEKCQGTKCSRCANTCPKGVFEASGDAIRVKEDR 211
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
V + CT CR C +VS R + +I ++E TGALS + EAV IL K
Sbjct: 212 VLE---CTFCRLCENTCPAGAVKVSWR--DNEYILSLELTGALSARNVLLEAVNILSRKL 266
Query: 375 ERVITEL 381
+ + EL
Sbjct: 267 DAFMDEL 273
>gi|237834427|ref|XP_002366511.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|211964175|gb|EEA99370.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|221501508|gb|EEE27282.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii VEG]
Length = 484
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 155/315 (49%), Gaps = 33/315 (10%)
Query: 80 VIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
V ++++ ++F L D +IAN RR++I+E+P++AI+ V + NTSV+ DE ++HRLGL
Sbjct: 155 VKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVLHDEYISHRLGL 214
Query: 140 IPIIVDPRLFEYMSENDTSN----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
+PI R+ E+++ +D + ++ + L V+CER L + + G+ L
Sbjct: 215 LPID-STRVAEFVNRDDCDCADHCSRCSVQYALDVVCERD-SLLVTHRDIVADNARGASL 272
Query: 196 PLETKPD-SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
D P P LL E + M I I +L Q + + A
Sbjct: 273 ASAGFLDLGCPMPVP-----------LLREMQE---KEMDGIPIVKLRKNQSVNMRMTAT 318
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV----EDEDAEKLVKTCPVNVFD-IEDIGSG 309
KGIGK HAKWSPVATA Y+ PEI ED+ E ++ +CP VF I+D +G
Sbjct: 319 KGIGKVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATG 378
Query: 310 KKRA-TVAQPRACTLCRECLRCGEE--WEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
V C C +C +E + + V + + F FT+ESTG + E + A
Sbjct: 379 GTGVLRVENKMNCIFCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMA 438
Query: 367 VKILEDKCERVITEL 381
IL +K +TEL
Sbjct: 439 FDILLNK----VTEL 449
>gi|15226509|ref|NP_179142.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|12643753|sp|Q39212.2|RPB3B_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-B;
Short=RNA polymerase II subunit 3-B; Short=RNA
polymerase II subunit B3-B; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide B
gi|4544373|gb|AAD22284.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|28973621|gb|AAO64135.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|29824193|gb|AAP04057.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|110736768|dbj|BAF00345.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|330251303|gb|AEC06397.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 319
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 155/310 (50%), Gaps = 40/310 (12%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PTMAI V I N+SV+ DE +A RL L
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSL 73
Query: 140 IPIIVDPRLFEYMSEN------DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + ++ D E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKC-VTDQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +TS SS+ D I IA+L GQE++L+A A
Sbjct: 127 --------SADPTVTPVDFTSNSSTSDSSEHKG---------IIIAKLRRGQELKLKALA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT Y P+I++ E+ + DE+ L+++ P VF I+ +
Sbjct: 170 RKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTG- 228
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ V P A T E ++ E K + I D F+FT+ESTGAL L A+
Sbjct: 229 --QVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAI 286
Query: 368 KILEDKCERV 377
IL+ K + +
Sbjct: 287 DILKQKLDAI 296
>gi|397615411|gb|EJK63419.1| hypothetical protein THAOC_15929 [Thalassiosira oceanica]
Length = 323
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 158/332 (47%), Gaps = 48/332 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E+ + ++ F L D ++AN RRI+IAE+PT+AI+ V N+SV+ DE +AHR
Sbjct: 8 KIEIKHIAPHEITFVLSETDTSMANTLRRIMIAEVPTLAIDLVEYHENSSVLNDEYIAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIPI P + V +C PR +V E
Sbjct: 68 LGLIPIRYSPD-----GTLKGGDCHQAFVPHRECVCYDRCPRCSV------------EFD 110
Query: 197 LETKPDSNPSSKP---RTYTSFSSSQDLLPEFSNNPIRPML-------------DITIAR 240
L+ D S+P R +S+DL+ +N + P I+I +
Sbjct: 111 LDVNFDKVNMSRPEQERDLPLTVTSRDLIA--NNVQVSPAHFLNEEEQDNAHDEGISIVK 168
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEKLVKTC 296
LG GQ + L+A A GI K HAKW PVA A YR PEI + ++ + E ++LV C
Sbjct: 169 LGQGQHLRLKAIARMGISKEHAKWCPVAVATYRFWPEITINQEACNNLTMEQKQELVDAC 228
Query: 297 PVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKR-------VSIRRVKDHFIF 349
P + ++++I +G + T T E L+ ++ KR V + D F+F
Sbjct: 229 PDRILELDEI-TGNLKPTEGAEELATFT-EDLKYAQDAMKRRPEDDDYVQVTHSTDRFLF 286
Query: 350 TIESTGALSPETLFTEAVKILEDKCERVITEL 381
++ES+GA+ E + ++++L+D+ + E+
Sbjct: 287 SVESSGAMDAEDILLSSLRVLKDRLNYLAAEV 318
>gi|221486200|gb|EEE24470.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii GT1]
Length = 484
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 155/315 (49%), Gaps = 33/315 (10%)
Query: 80 VIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
V ++++ ++F L D +IAN RR++I+E+P++AI+ V + NTSV+ DE ++HRLGL
Sbjct: 155 VKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVLHDEYISHRLGL 214
Query: 140 IPIIVDPRLFEYMSENDTSN----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
+PI R+ E+++ +D + ++ + L V+CER L + + G+ L
Sbjct: 215 LPID-STRVAEFVNRDDCDCADHCSRCSVQYALDVVCERD-SLLVTHRDIVADNARGASL 272
Query: 196 PLETKPD-SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
D P P LL E + M I I +L Q + + A
Sbjct: 273 ASAGFLDLGCPMPVP-----------LLREMQE---KEMDGIPIVKLRKNQSVNMRMTAT 318
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV----EDEDAEKLVKTCPVNVFD-IEDIGSG 309
KGIGK HAKWSPVATA Y+ PEI ED+ E ++ +CP VF I+D +G
Sbjct: 319 KGIGKVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATG 378
Query: 310 KKRA-TVAQPRACTLCRECLRCGEE--WEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
V C C +C +E + + V + + F FT+ESTG + E + A
Sbjct: 379 GTGVLRVENKMNCIYCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMA 438
Query: 367 VKILEDKCERVITEL 381
IL +K +TEL
Sbjct: 439 FDILLNK----VTEL 449
>gi|348687896|gb|EGZ27710.1| hypothetical protein PHYSODRAFT_554134 [Phytophthora sojae]
Length = 242
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 124/234 (52%), Gaps = 24/234 (10%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E+ L D + F+L DA++ANA RR++I+E+PT+AI+ V I NTSV+ DE LAHR
Sbjct: 8 KIEIQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDEFLAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS-EL 195
LG+IP+ D L N + V+ C+ P +V+ + NG +
Sbjct: 68 LGMIPLNFDGGL---------ENFRQRFVYSADCDCDENCPNCSVEFSLDVTADNGVLSV 118
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
E S+P +P +FSS ++L NN + IA+LGPGQ + L A A
Sbjct: 119 TSEALKSSDPYIRP---VNFSSEEEL-----NNTQDS--GVIIAKLGPGQRLRLSAIAKL 168
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIED 305
GIGK HAKWSPVA A Y P I L L E +L K+CP V++ ++
Sbjct: 169 GIGKEHAKWSPVAVATYMYDPIITLNQAVLSTYTPEQKAELYKSCPTEVYETDE 222
>gi|401404694|ref|XP_003881797.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
gi|325116211|emb|CBZ51764.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
Length = 514
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 163/346 (47%), Gaps = 45/346 (13%)
Query: 55 SGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTM 114
GA+ MG+ + + + V ++ ++F L D +IANA RR++IAE+PT+
Sbjct: 143 GGAF--MGLTGTGAVGSMAYEPSIVVKEVSPSKVQFLLENCDVSIANALRRVMIAEVPTL 200
Query: 115 AIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHV 170
AI+ V + NTSV+ DE ++HRLGL+PI R+ E+++ D + ++ + L V
Sbjct: 201 AIDLVTVYENTSVLHDEYISHRLGLLPID-STRVAEFVNREDCDCADHCPRCSVQYALDV 259
Query: 171 LCERGGPRLT----VKTNELKW---LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLP 223
+C+ +T V N + P G L L P PR
Sbjct: 260 VCQNDSLLVTHRDIVADNAGRGTALAPGGGFLDLSCP---MPVPLPREMQQ--------- 307
Query: 224 EFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED 283
+ M I I +L Q + + A+KG+GK HAKWSPVATA Y+ PEI ED
Sbjct: 308 -------KEMDGIPIVKLRRNQSVNMRMTAIKGMGKLHAKWSPVATASYKFEPEISFEED 360
Query: 284 ----VEDEDAEKLVKTCPVNVFD-IEDIGSGKKRATVAQPRA-CTLCRECLRCGEE--WE 335
E ++ +CP +VF I+D +G + + C C +C ++ +
Sbjct: 361 QLARAPAEVKRQIAASCPRDVFAFIDDTATGGNGMLRVENKINCIYCDQCKIKAQDLGYR 420
Query: 336 KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
K V + + F FT+ESTG + E + A IL +K +TEL
Sbjct: 421 KLVRVEPNERKFYFTVESTGVMPAEQIVEMAFDILLNK----VTEL 462
>gi|440296135|gb|ELP88976.1| DNA-directed RNA polymerase subunit D, putative [Entamoeba invadens
IP1]
Length = 280
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 48/303 (15%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ + F + D + N RR+++AE+PT+AI+ V + NTS + DE +AHRLGLIP+
Sbjct: 17 EKLSFRIYNTDTSFVNGLRRMIMAEVPTIAIQLVRVHLNTSYLCDEYIAHRLGLIPLD-S 75
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
+++++ + T +F + V+ E L V +N+L+++ P+ K D NP
Sbjct: 76 TKVYDFEDGDQT-------IFNIRVVNENERESLNVTSNDLQFVEGKKLFPVGYKSD-NP 127
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
I I +LGP Q + ++ A KG GK HAKW+
Sbjct: 128 ------------------------------IIITQLGPRQSLYVDCFATKGTGKFHAKWN 157
Query: 266 PVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
P ++ L +I + L ++ E + CP VF+ ++I R TV P +C
Sbjct: 158 PTCQCVFQTLADIQINETKLANLTGEQRRTFCEMCPQKVFEFQEING---RITVDHPESC 214
Query: 322 TLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVIT 379
C+EC ++ +R ++ D FIF +E TG +++ + + +K + +
Sbjct: 215 IFCQECTVYSKDIGQRNFCTVTPKTDEFIFKVEGTGVYPAKSVVSYGFGEMINKFSYLKS 274
Query: 380 ELS 382
EL
Sbjct: 275 ELG 277
>gi|301093788|ref|XP_002997739.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
gi|262109988|gb|EEY68040.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
Length = 241
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 124/234 (52%), Gaps = 24/234 (10%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+++V L D + F+L DA++ANA RR++I+E+PT+AI+ V I NTSV+ DE LAHR
Sbjct: 8 KIDVQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDEFLAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVK-TNELKWLPNGSEL 195
LG+IP+ D L N + V+ C+ P +V+ T ++ +
Sbjct: 68 LGMIPLNFDGGL---------ENFRQRFVYSQDCDCDENCPNCSVEFTLDVTADSGVLSV 118
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
E S+P +P +FSS ++L NN + IA+LGPGQ + L A A
Sbjct: 119 TSEALKSSDPYIRP---VNFSSEEEL-----NNTQDS--GVIIAKLGPGQRLRLSAIAKL 168
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIED 305
GIGK HAKWSPVA A Y P I L L E +L K+CP VF+ ++
Sbjct: 169 GIGKEHAKWSPVAVATYMYDPIITLNQAVLSTYSPEQKAELYKSCPTEVFETDE 222
>gi|67624207|ref|XP_668386.1| conjugation stage-specific protein [Cryptosporidium hominis TU502]
gi|54659581|gb|EAL38151.1| conjugation stage-specific protein [Cryptosporidium hominis]
Length = 355
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 154/327 (47%), Gaps = 54/327 (16%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E+ LT + + F L D ++AN RRI++AE+PT+AI+ V + +NTSV+ DE + HR
Sbjct: 11 KAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIVHR 70
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKN--TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+GLIP+ + R F + + N ++ + L V CE G R V +++ + +
Sbjct: 71 MGLIPLDSTNIRDFNFKDRCECQERCNKCSVEYLLDVTCEGGATR-NVTHYDIQPVATST 129
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+P+ P K D + +N I IA+LGPGQ I + A
Sbjct: 130 LVPM-------PVPK---------KDDSVDGMNNG-------ILIAKLGPGQRIAMRMTA 166
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKW PV+ A + ++ L ++ + +++V CP +VF + S
Sbjct: 167 CKGIGKFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGNTSK 226
Query: 310 KKRAT-------------------VAQPRACTLCRECLRCGEEWE----KRVSIRRVKDH 346
+ A V ++C C EC+ + + + + D
Sbjct: 227 TEYALNKNSTYSTKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPALIRVDTKPDK 286
Query: 347 FIFTIESTGALSPETLFTEAVKILEDK 373
F F +ESTGAL E++ A +IL++K
Sbjct: 287 FHFLVESTGALPVESIVELAFEILQEK 313
>gi|66362260|ref|XP_628094.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
gi|46227424|gb|EAK88359.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
Length = 355
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 154/327 (47%), Gaps = 54/327 (16%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E+ LT + + F L D ++AN RRI++AE+PT+AI+ V + +NTSV+ DE + HR
Sbjct: 11 KAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIVHR 70
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKN--TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+GLIP+ + R F + + N ++ + L V CE G R V +++ + +
Sbjct: 71 MGLIPLDSTNIRDFNFKDRCECQERCNKCSVEYLLDVTCEGGATR-NVTHYDIQPVATST 129
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+P+ P K D + +N I IA+LGPGQ I + A
Sbjct: 130 LVPM-------PVPK---------KDDSVDGMNNG-------ILIAKLGPGQRIAMRMTA 166
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKW PV+ A + ++ L ++ + +++V CP +VF + S
Sbjct: 167 CKGIGKFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSK 226
Query: 310 KKRAT-------------------VAQPRACTLCRECLRCGEEWEK----RVSIRRVKDH 346
+ A V ++C C EC+ + + + + D
Sbjct: 227 TEYALNKNSAYSTKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPVLIRVDTKPDK 286
Query: 347 FIFTIESTGALSPETLFTEAVKILEDK 373
F F +ESTGAL E++ A +IL++K
Sbjct: 287 FHFLVESTGALPVESIVELAFEILQEK 313
>gi|304314287|ref|YP_003849434.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
gi|302587746|gb|ADL58121.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
Length = 264
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 134/297 (45%), Gaps = 47/297 (15%)
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
T +M F + G+ NA RRI + E+P +AIE V + N + + DEVLAHRLGL+P+
Sbjct: 9 TDTEMVFVVTGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDARMFDEVLAHRLGLVPLK 68
Query: 144 VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
DP E + + + CE +V K P
Sbjct: 69 ADPEFIEGLKMPEECD------------CEEYCSECSVSFTLKKKGPG------------ 104
Query: 204 NPSSKPRTYTSFSSSQDLLPEF-SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
S+DLL E + P+ P DI + +LG E+ELEA A G+G+ HA
Sbjct: 105 -----------VVYSRDLLSETPAVEPVYP--DIPLVKLGDEDEVELEAVAQLGVGRDHA 151
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KW P Y+ P I E E ++ + V CP V +G + V C+
Sbjct: 152 KWEPTTACAYKYYPMITFTE--ECDECLECVDACPRGV-----LGDESGKPEVLDVENCS 204
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVIT 379
+C+ C+R ++ V K FIF IE+ G++ P+ + +A IL DK ERVIT
Sbjct: 205 MCKSCVRACDKGAIIVGYEEGK--FIFRIETDGSVDPQDVLLKACDILRDKAERVIT 259
>gi|412990464|emb|CCO19782.1| DNA-directed RNA polymerase II subunit RPB3 [Bathycoccus prasinos]
Length = 298
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 149/306 (48%), Gaps = 43/306 (14%)
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
T D ++F L ++ANA RR+ IAE+PT+AI+ V I N+SV+ DE +AHRLGL+P++
Sbjct: 13 TSDFVKFTLSNTCLSVANAVRRVAIAEVPTVAIDLVEIVENSSVLCDEFIAHRLGLVPLV 72
Query: 144 VDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
D +YM ++ E K + L V C L V TN L + LP+
Sbjct: 73 SDSA-SDYMLPSEYVGEDEAKINVHLNLAVKCS-SDHTLDVTTNHL-ICADAKFLPVNFH 129
Query: 201 P---DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
P DSN P + I +L QE+ ++ A KGI
Sbjct: 130 PIDSDSNKQEPP-------------------------GVLIVKLRKNQELVVKCIARKGI 164
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDE--DAEK--LVKTCPVNVFDIEDIGSGKKRA 313
GK HAKWSPVATA Y+ PE+ L E++ ++ D EK LV +CP+ + + K
Sbjct: 165 GKDHAKWSPVATAVYKCEPELYLNEELTNKLTDREKLELVNSCPIPIL---RLNQHTKSL 221
Query: 314 TVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
+ + + EC++ EE+ K V I+ +D F F +E TG L P + KIL
Sbjct: 222 EIERNDSYAYDDECIKKAEEFGKGKIVEIKAKEDTFNFFLEGTGVLRPGRIVLHTFKILL 281
Query: 372 DKCERV 377
K + +
Sbjct: 282 SKLDSI 287
>gi|291230540|ref|XP_002735226.1| PREDICTED: polymerase (RNA) I polypeptide C, 30kDa-like, partial
[Saccoglossus kowalevskii]
Length = 202
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 122/240 (50%), Gaps = 59/240 (24%)
Query: 155 NDTSNEKNTIVFKLHVLCERG--GPR-----------LTVKTNELKWLPNGSELPLETKP 201
+D ++TI F+L V C R P+ V T +LKW+P G++ + +
Sbjct: 1 DDEGTTEDTIEFQLKVKCTRNPHAPKDATDPDEMYRHWRVTTKDLKWVPFGNQGDIYSGD 60
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
D S D DI IA+L PGQEI+++ H VKG+GK H
Sbjct: 61 D------------IYSVHD--------------DILIAKLRPGQEIDVKVHCVKGLGKDH 94
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AK+SPVATA YR+LPE+ L + V E AE+L KT V +++DIG +
Sbjct: 95 AKFSPVATASYRLLPEMKLTKPVVGEQAERLAKTFSPRVIEVQDIGGISSQD-------- 146
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
++C V + +V++HFIF++ESTGAL P+ L +EA+K+L KC +T L
Sbjct: 147 --LKDC----------VKLSKVRNHFIFSVESTGALKPDVLVSEAIKVLIGKCRTFLTAL 194
>gi|209881574|ref|XP_002142225.1| DNA-directed RNA polymerase II subunit RPB3 [Cryptosporidium muris
RN66]
gi|209557831|gb|EEA07876.1| DNA-directed RNA polymerase II subunit RPB3, putative
[Cryptosporidium muris RN66]
Length = 348
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 157/326 (48%), Gaps = 52/326 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E+ + ++F L D ++ANA RRI++AE+PT+AI+ V I +NTSV+ DE + HRL
Sbjct: 11 IEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFIVHRL 70
Query: 138 GLIPIIVDPRLFEYMSENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GL+PI D R + D K ++ + L + CE GP TV+ + L
Sbjct: 71 GLLPI--DSRQIRDFNFKDRCGCQERCNKCSVDYTLDLKCE--GP--TVR--NVTHLDIY 122
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S LP+ P P + T NN I IA+LGPGQ +
Sbjct: 123 STLPVPNIPLPVPRKEDVTD-------------PNNE-----GILIAKLGPGQSLTARMT 164
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDI----E 304
A KGIGK HAKW PVATA + +I + + +V + ++V +CP NVF +
Sbjct: 165 ATKGIGKFHAKWIPVATATFTNEADIRINQSSMTNVSLKHRREIVNSCPKNVFGLSASKS 224
Query: 305 DIGSGKK---RAT------VAQPRACTLCRECLR-CGEEWEKRVSIRRVK---DHFIFTI 351
+ G K ++T V C C EC+ C + RV D F F +
Sbjct: 225 EFGMFDKPVEKSTNIPDIEVLNSSDCIFCNECVNTCRNLGYINPPLIRVDTKPDKFHFVV 284
Query: 352 ESTGALSPETLFTEAVKILEDKCERV 377
ESTGA+ E + A++IL++K + +
Sbjct: 285 ESTGAMPAEQIIEMALEILQEKLQNL 310
>gi|161899301|ref|XP_001712877.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
gi|75756371|gb|ABA27265.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
Length = 293
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 117/211 (55%), Gaps = 17/211 (8%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
F+ +V+ L ME +++G+D++I NA RRIL++E+ T+AIE + + NTS++ D +LAH
Sbjct: 28 FQFKVLVLNNFFMEIEIVGLDSSIINAMRRILLSEIATIAIEDIYVFENTSILNDNILAH 87
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT--VKTNELKWLPNGS 193
R+GLIP+ ++P+ ++ ++ N++V L RLT + + + GS
Sbjct: 88 RIGLIPLRINPKQIQFQKMYCLKDQTNSVVLILKNSNFCNSFRLTKDIFCKDFSYRRYGS 147
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+P ++ R Y FS QD++ + N DI I +L P Q + LEAH
Sbjct: 148 LIPHQS----------RVY--FSIKQDIVKK---NSFLTFEDILITKLKPKQLLFLEAHC 192
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
KG H+K+SPVA AWY +L++++
Sbjct: 193 KKGYSTQHSKYSPVAAAWYLYYSTTILIKNL 223
>gi|15678067|ref|NP_275181.1| DNA-directed RNA polymerase subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122766|sp|O26144.1|RPOD_METTH RecName: Full=DNA-directed RNA polymerase subunit D
gi|2621073|gb|AAB84545.1| DNA-dependent RNA polymerase, subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 264
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 47/297 (15%)
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
T +M F + G+ NA RRI + E+P +AIE V + N + + DEVLAHRLGL+P+
Sbjct: 9 TDTEMVFVVSGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDAKMFDEVLAHRLGLVPLA 68
Query: 144 VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
DP E + + + CE +V K P
Sbjct: 69 ADPEFAESLKMPEECD------------CEEYCSECSVSLTLRKKGPG------------ 104
Query: 204 NPSSKPRTYTSFSSSQDLLPEF-SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
S DL+ E + P+ P DI + +LG E+ELEA A G+G+ HA
Sbjct: 105 -----------VVYSGDLVSETPAVKPVYP--DIPLVKLGDDDELELEAVAQLGVGREHA 151
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KW P Y+ P I ED ++ + ++ CP +V +G + V C+
Sbjct: 152 KWEPTTACAYKYYPRIEFSEDC--DECLECIEACPRDV-----LGEESGKPVVVDLENCS 204
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVIT 379
+C+ C+R + ++ + + + FIF IE+ G++ P+ + +A IL DK E+VIT
Sbjct: 205 MCKSCVRACD--KRAIDVGYEEGKFIFRIETDGSVDPKDVLLKACDILRDKAEQVIT 259
>gi|407832302|gb|EKF98383.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi]
Length = 365
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 137/303 (45%), Gaps = 45/303 (14%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EF L +D + AN RR+++AE+P + IE V I NTSV+ DE++AHR+GL+P+
Sbjct: 47 LEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLY---- 102
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + + + LC G ELK ++ L+ DS
Sbjct: 103 ----------SMKARRMQYARDCLCGGSGCGECQINGELKVSCPSNKHSLQVFMDSLKID 152
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
Y S + + + LG QE+ L K I KTHAK+ PV
Sbjct: 153 DEEVYPVSSEERG---------------VWLLTLGRSQELNLRVVIRKNIAKTHAKFMPV 197
Query: 268 ATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
AT R +IVL D ++ E + V+ CP VF +D + +A P AC
Sbjct: 198 ATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDD---RTGQVLLADPDACIF 254
Query: 324 CRECLRCGEEWEK----RVSIRRVKDH-----FIFTIESTGALSPETLFTEAVKILEDKC 374
CRECL + K V +R KD F FT+ESTGAL + +AV++L K
Sbjct: 255 CRECLLKEPPFNKLAEPLVFVRHKKDKRGYYDFTFTVESTGALPVLQILYDAVEVLRRKL 314
Query: 375 ERV 377
ERV
Sbjct: 315 ERV 317
>gi|407410818|gb|EKF33119.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi marinkellei]
Length = 337
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 137/303 (45%), Gaps = 45/303 (14%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EF L +D + AN RR+++AE+P + IE V I NTSV+ DE++AHR+GL+P+
Sbjct: 19 LEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLY---- 74
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + + + LC G ELK ++ L+ DS
Sbjct: 75 ----------SMKARRMQYARDCLCGGSGCGECQINGELKVSCPSNKHSLQVFMDSLKID 124
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
Y S + + + LG QE+ L K I KTHAK+ PV
Sbjct: 125 DEEVYPVSSEERG---------------VWLLTLGRSQELNLRVVIRKNIAKTHAKFMPV 169
Query: 268 ATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
AT R +IVL D ++ E + V+ CP VF +D + +A P AC
Sbjct: 170 ATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDD---RTGQVLLADPDACIF 226
Query: 324 CRECLRCGEEWEK----RVSIRRVKDH-----FIFTIESTGALSPETLFTEAVKILEDKC 374
CRECL + K V +R KD F FT+ESTGAL + +AV++L K
Sbjct: 227 CRECLLKEPPFNKLAEPLVFLRHKKDKRGYYDFTFTVESTGALPVLQILYDAVEVLRRKL 286
Query: 375 ERV 377
ERV
Sbjct: 287 ERV 289
>gi|71663692|ref|XP_818836.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma cruzi strain
CL Brener]
gi|70884108|gb|EAN96985.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi]
Length = 363
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 136/303 (44%), Gaps = 45/303 (14%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EF L +D + AN RR+++AE+P + IE V I NTSV+ DE++AHR+GL+P+
Sbjct: 45 LEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLY---- 100
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + + + LC G ELK ++ L+ DS
Sbjct: 101 ----------SMKARRMQYARDCLCGGSGCGECQINGELKVSCPSNKHSLQVFMDSLKID 150
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
Y S + + LG QE+ L K I KTHAK+ PV
Sbjct: 151 DEEVYPVSSEEHG---------------VWLLTLGRSQELNLRVVIRKNIAKTHAKFMPV 195
Query: 268 ATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
AT R +IVL D ++ E + V+ CP VF +D + +A P AC
Sbjct: 196 ATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDD---RTGQVLLADPDACIF 252
Query: 324 CRECLRCGEEWEK----RVSIRRVKDH-----FIFTIESTGALSPETLFTEAVKILEDKC 374
CRECL + K V +R KD F FT+ESTGAL + +AV++L K
Sbjct: 253 CRECLLKEPPFNKLAEPLVFVRHKKDKRGYHDFTFTVESTGALPVLQILYDAVEVLRRKL 312
Query: 375 ERV 377
ERV
Sbjct: 313 ERV 315
>gi|145342475|ref|XP_001416207.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
gi|144576432|gb|ABO94500.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
Length = 318
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 160/330 (48%), Gaps = 64/330 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V V RL + + FDL G+D ++ANA RR++IA++PT++I+ V + N+SV+ DE LAHRL
Sbjct: 11 VTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRL 70
Query: 138 GLIPI-------IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
GLIP+ +V P +EY ++DT+ + + +L+V C+ R V +++L
Sbjct: 71 GLIPLDSTKASELVKP--YEYTGDDDTATD---VHLELNVRCQSDQTR-DVTSDDL---- 120
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+ P S T + S +L IA+L Q++ L+
Sbjct: 121 ------ISHDERVKPVSFGGTGGGSAKSGGIL---------------IAKLRKNQQLSLK 159
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEI-----------------VLLEDVEDEDA---- 289
A KG GK HAKWSPVATA ++ P I +L + + +A
Sbjct: 160 CIARKGTGKDHAKWSPVATAVFKYTPLIDINHGLLNSLNGKSQTRILYHNFKRHNAGPEK 219
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHF 347
+V++ P +F + + T+ P +CT E ++ E K + +R D F
Sbjct: 220 AAIVESDPSKMFKYD---ADTDTFTLTSPESCTYDGEVMKKVNELGKPGLIDVRPGLDCF 276
Query: 348 IFTIESTGALSPETLFTEAVKILEDKCERV 377
F +ESTG L E + +AV IL+ K + +
Sbjct: 277 TFIVESTGVLKVEEVVLQAVHILQSKLDTI 306
>gi|397620460|gb|EJK65733.1| hypothetical protein THAOC_13380 [Thalassiosira oceanica]
Length = 1014
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 111/200 (55%), Gaps = 21/200 (10%)
Query: 181 VKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIA 239
+ T +L W P G +L + F + IRP+ DI +A
Sbjct: 821 IYTRDLLWAPQGDQL-----------------SRFPLHSSGVGSGVGGGIRPLHEDILLA 863
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN 299
+L PGQ IELEAHA KG+GK HAK+SPVATA YR++P I +++ V D+ AE+LV
Sbjct: 864 KLRPGQVIELEAHARKGVGKDHAKFSPVATASYRLMPRIEVVKPVYDDLAEELVNWFEPG 923
Query: 300 VFDIE--DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
VF +E D G A V P ACT R +R ++ + + R+ DHFIF++ES G++
Sbjct: 924 VFKLEPADDGEHAFEAKVVNPYACTCSRNFMR-NPILKESIRMSRIPDHFIFSVESVGSM 982
Query: 358 SPETLFTEAVKILEDKCERV 377
PE + EA+K+L++K RV
Sbjct: 983 EPEVIVAEALKVLKEKSLRV 1002
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 15/115 (13%)
Query: 75 NFRVEVIRLTKDDMEF--------DLIGIDAAIANAF-RRILIAELPTMAIEKVLIANNT 125
FR I KD EF L ID N I+IAE+PTMA+E V + NNT
Sbjct: 613 QFRHAPISTPKDGAEFISRLSKGLKLNVIDRPAKNELVFEIMIAEVPTMALEYVYMWNNT 672
Query: 126 SVIQDEVLAHRLGLIPIIVDPRLFEYM---SEND---TSNEKNTIVFKLHVLCER 174
+I DEVL+HR+GLIP+ VDPRLF++ +++D + ++NTIVF+L+V C R
Sbjct: 673 GLIHDEVLSHRMGLIPLNVDPRLFDHYGLDTDDDGEPAATDRNTIVFRLNVSCGR 727
>gi|47204376|emb|CAG13794.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 87/124 (70%), Gaps = 2/124 (1%)
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
GK HAK+SPVATA YR+LPEI LLE VE E AE+L + V D+ED +G+K A VA
Sbjct: 1 GKDHAKYSPVATASYRLLPEITLLEPVEGEKAERLQRCFLPGVIDLED-PNGRKVARVAN 59
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
R T RE LR ++ +K V + R +DHFIFT+ESTG L PE L TEA+K+L +KC+R
Sbjct: 60 SRLDTCSREVLR-HDDLKKVVKLGRRRDHFIFTVESTGILPPEVLVTEAIKVLMNKCQRF 118
Query: 378 ITEL 381
++EL
Sbjct: 119 LSEL 122
>gi|284162138|ref|YP_003400761.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
gi|284012135|gb|ADB58088.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
Length = 261
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 156/313 (49%), Gaps = 60/313 (19%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
R+E++ + + F L A+AN+FRR + + +PTMA++ V+ NTS + DE++AH
Sbjct: 1 MRIEILEESDLKVRFILHNAPIALANSFRRAMKSLVPTMAVDYVVFYMNTSFLYDEIIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
R+GLIPI D F + E + F+L+V GP++
Sbjct: 61 RIGLIPIKTDLERFNMPDKCVCGGEGCPNCQVSFRLNV----EGPKVV------------ 104
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEA 251
Y+ S+D PE I+P+ D I I L GQ++ +EA
Sbjct: 105 -------------------YSGDLISED--PE-----IKPVYDNIPIVELYEGQQLMIEA 138
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
A G GK HAK+ PV+ +Y+++PEI++ ++ + V CP N+ + +GK
Sbjct: 139 VARLGTGKEHAKYQPVSACYYKIIPEIIVKDNC--NNCGNCVSACPRNILRL----NGK- 191
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
V +C++CREC++ EE V D+++F +E TGAL + + +A++IL+
Sbjct: 192 -VEVTDILSCSMCRECVKVCEENAIDVV---ETDNYLFAVEGTGALPVKVVMKKALEILK 247
Query: 372 DKCE---RVITEL 381
+K E R+I E+
Sbjct: 248 EKAEEMNRIILEI 260
>gi|514320|gb|AAB03740.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
Length = 319
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 153/310 (49%), Gaps = 40/310 (12%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PTMAI V I N+SV+ DE +A RL L
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSL 73
Query: 140 IPIIVDPRLFEYMSEN------DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + ++ D E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKC-VTDQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +TS SS+ D I IA+L GQE++L+A A
Sbjct: 127 --------SADPTVTPVDFTSNSSTSDSSEHKG---------IIIAKLRRGQELKLKALA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP AT Y P+I++ E+ + DE+ L+++ P VF I+ +
Sbjct: 170 RKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTG- 228
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ V P A T E ++ E K + I D F+ ++ STGAL L A+
Sbjct: 229 --QVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVLSVHSTGALKASQLVLNAI 286
Query: 368 KILEDKCERV 377
IL+ K + +
Sbjct: 287 DILKQKLDAI 296
>gi|304274344|gb|ADM18919.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274346|gb|ADM18920.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274358|gb|ADM18926.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N L FCN+ +V V L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDLASFCNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E + D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLEIKKDADEAPTDLNTVVFGLVARCER 117
>gi|390939160|ref|YP_006402898.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
gi|390192267|gb|AFL67323.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
Length = 284
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 49/316 (15%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
++ ++++ T ++ L + + N+ RR +++E+PTMA++ V I N+SV DE +
Sbjct: 3 SSLHIDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYI 62
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFK----LHVLCERGGPR---LTVKTNEL 186
+HRLGLIP+ + L +Y + + + +F + + E GP LTV + +L
Sbjct: 63 SHRLGLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKGVLTVYSRDL 122
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS D++P + +I I +L Q
Sbjct: 123 ----------------------------VSSDPDVVPIYG--------EIPILKLIKDQS 146
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIED 305
I LEA+A G GK H KWSPV+TA ++ +P I L E + + + V CP N+F+ ++
Sbjct: 147 IRLEAYARLGRGKEHIKWSPVSTAAHKYIPVITLNSEKCKGAECSRCVNACPKNIFEADN 206
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
K + + CT CR C +VS R ++ +IF +E TGAL+ + E
Sbjct: 207 NSVRVKEDKILE---CTFCRLCENVCPTQAVKVSWR--ENEYIFYLELTGALNARNILIE 261
Query: 366 AVKILEDKCERVITEL 381
A+ IL K + I EL
Sbjct: 262 AINILSRKLDAFIDEL 277
>gi|414588990|tpg|DAA39561.1| TPA: hypothetical protein ZEAMMB73_135001 [Zea mays]
Length = 260
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 123/238 (51%), Gaps = 23/238 (9%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + L D +F+L DA++ANA RR++IAE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 14 RVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 73
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + S + D S E ++ F L V L V +N+L+ +
Sbjct: 74 LGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVTSNDLRSM- 132
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
P P + R Y D ++N R +L I +L GQE+ L
Sbjct: 133 ---------DPKVCPVDQARAYQHALGGTDPFGANASNENRGIL---IVKLRRGQELRLR 180
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIE 304
A A KGIGK HAKWSP AT + P+I L+E + E+ L+++ P VF+++
Sbjct: 181 AIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERISLIESSPTKVFELD 238
>gi|325958565|ref|YP_004290031.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
gi|325329997|gb|ADZ09059.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
Length = 262
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 135/289 (46%), Gaps = 45/289 (15%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F + G+D A NA RRI E+PTMAIE V I N + I DE LAHRLGL+P+ D
Sbjct: 15 FAIEGVDDAFINAIRRISTVEVPTMAIETVEILKNDAKIFDEALAHRLGLVPLKTDLESM 74
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
S+ D + T L L + GP+ TV + +L+
Sbjct: 75 VLASDCDCEDYCPTCSVTL--LLKEKGPK-TVYSGDLQ---------------------- 109
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
S D++P P + +L GQE+EL A A GIG H+KW P T
Sbjct: 110 ------SQDPDVVPVHDTIP--------LLKLKEGQEVELIAVAKLGIGLEHSKWQPTTT 155
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
Y+ P+I + D + E CP V++ ++ + + C++C+ C+R
Sbjct: 156 CAYKYYPKITIDSD-KCESCGLCASECPRAVYEFDEKAN---TLEIVDIENCSMCKTCVR 211
Query: 330 CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVI 378
E +++ K ++FTIE+ G+LSPE + T A +IL K +++I
Sbjct: 212 GCEAG--AITVEGEKGKYLFTIETDGSLSPEKVLTTACEILSSKSDKII 258
>gi|164661059|ref|XP_001731652.1| hypothetical protein MGL_0920 [Malassezia globosa CBS 7966]
gi|159105553|gb|EDP44438.1| hypothetical protein MGL_0920 [Malassezia globosa CBS 7966]
Length = 213
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 116/227 (51%), Gaps = 40/227 (17%)
Query: 155 NDTSNEKNTIVFKLHVLCERGGPR-------LTVKTNELKWLPNGSELPLETKPDSNPSS 207
+D +N++NT+VF L C + G V +++L+W P G + ET DS P
Sbjct: 2 DDEANDQNTVVFNLKADCWKNGNSKDATVEGRYVYSSQLEWDPKGDQA--ETMADSPP-- 57
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
RP+ DI IA+L PGQ +E+E H KGIGK HAK+SP
Sbjct: 58 -----------------------RPVNQDIVIAKLAPGQGMEMELHCEKGIGKDHAKFSP 94
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
VATA YR+LP I +L+ + + K + P V G+ VA R T+ RE
Sbjct: 95 VATATYRLLPLIEILKPIPEPLIPKFISCFPEGVIH----KGGENGVYVADARKDTVTRE 150
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
LR E+E V + R++DHF+F++ESTG PE L ++++L K
Sbjct: 151 VLRY-PEFEGYVRLGRIQDHFLFSVESTGVYEPEDLLPASIEVLRKK 196
>gi|384245015|gb|EIE18511.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 303
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 147/302 (48%), Gaps = 44/302 (14%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR +DD EF L D ++ANA RRI++ E+PT+AI+ V I NT+V+ DE +AHRLGL
Sbjct: 15 IRDLRDDFCEFVLSDTDPSVANALRRIMLVEVPTIAIDLVEIEENTTVLNDEFIAHRLGL 74
Query: 140 IPIIVDP-----RLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
IP++ +FE E D + + T L+V C + V +N+L+ N
Sbjct: 75 IPLVSSAVGGMKGVFEDAGEADFLDVEMT----LNVKCT-SEDTMEVTSNDLQLDAN--- 126
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+P +P Y PE I + ++ QE+ L+A A
Sbjct: 127 ---------HPDVRPVGYVPGGYD----PENRG--------ILLVKMRKNQELRLKAIAR 165
Query: 255 KGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
KGIGK HAKW PVAT ++ +PEI L++ + +E E VK P VF +I
Sbjct: 166 KGIGKDHAKWIPVATVSFQYMPEITINRALMDTLTEEQKEDWVKATPNPVFRYNNITKQV 225
Query: 311 KRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
+ V Q R E EE K V+I+ +D FIF +E TG L E + A++
Sbjct: 226 ELDDVEQYRYDG---EAEAKAEELGKPGLVTIKERQDMFIFRVEGTGVLRAEDVVLTALE 282
Query: 369 IL 370
+L
Sbjct: 283 VL 284
>gi|218884674|ref|YP_002429056.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
gi|218766290|gb|ACL11689.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
Length = 280
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 146/314 (46%), Gaps = 49/314 (15%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++++ T ++ L + + N+ RR +++E+PTMA++ V I N+SV DE ++H
Sbjct: 1 MHIDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFK----LHVLCERGGPR---LTVKTNELKW 188
RLGLIP+ + L +Y + + + +F + + E GP LTV + +L
Sbjct: 61 RLGLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDL-- 118
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
SS D++P + +I I +L Q I
Sbjct: 119 --------------------------VSSDPDVVPVYG--------EIPILKLIKDQSIR 144
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIEDIG 307
LEA+A G GK H KWSPV+TA ++ +P I + E + + + V CP N+F + G
Sbjct: 145 LEAYARLGRGKEHIKWSPVSTAAHKYVPAITIDSEKCKGAECSRCVNACPKNIF---EAG 201
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ R + CT CR C +VS R ++ +I +E TGAL+ + EA+
Sbjct: 202 NNSVRVKEDKILECTFCRLCENICPTQAVKVSWR--ENEYILYLELTGALNARNILIEAI 259
Query: 368 KILEDKCERVITEL 381
IL K + I EL
Sbjct: 260 NILSRKLDAFIDEL 273
>gi|71749338|ref|XP_828008.1| DNA-directed RNA polymerase subunit alpha [Trypanosoma brucei
TREU927]
gi|70833392|gb|EAN78896.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 337
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 34/290 (11%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
FD+ + +AN FRR+++ E+P A +++LI +N V+ DE+LAHR+GL+P+
Sbjct: 53 FDMDNVSPPVANMFRRLMLTEVPVFAFDRILIEHNDGVVPDELLAHRIGLVPLAGPVSSM 112
Query: 150 EYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
+Y++++ D + + ++F+L V +R P +V + LKW P + L + + +
Sbjct: 113 QYITDSASVGFDNLDPERVLLFELDVTAKRDVPTTSVYSGHLKWQPIAKQEELAARSEDD 172
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
R + + P DI + RLGPGQ ++L A A+KGIG HAKW
Sbjct: 173 -----RVFL----------------VHP--DIVLTRLGPGQRLKLRAIAIKGIGAVHAKW 209
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
+PVA +Y M ED++ + + + ++ + +PR+ +
Sbjct: 210 TPVAACFYEMKQ-----AKAGAEDSDGRASGRGRSRSGRGRVDANEEESNATRPRSAS-G 263
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
E V +R FT+ES G L +F +A+ + ++
Sbjct: 264 NHSHEPHRETVNEVIAKRDTSSVRFTVESIGQLYAVDVFRQALILFAERI 313
>gi|261333779|emb|CBH16774.1| DNA-directed RNA polymerase, alpha subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 137/290 (47%), Gaps = 34/290 (11%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
FD+ + +AN FRR+++ E+P A +++LI +N V+ DE+LAHR+GL+P+
Sbjct: 53 FDMDNVSPPVANMFRRLMLTEVPVFAFDRILIEHNDGVVPDELLAHRIGLVPLAGPVSSM 112
Query: 150 EYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
+Y++++ D + + ++F+L V +R P +V + LKW P + L + + +
Sbjct: 113 QYITDSASVGFDNLDPERVLLFELDVTAKRDVPTTSVYSGHLKWQPIAKQEELAARSEDD 172
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
R + + P DI + RLGPGQ ++L A A+KGIG HAKW
Sbjct: 173 -----RVFL----------------VHP--DIVLTRLGPGQRLKLRAIAIKGIGAVHAKW 209
Query: 265 SPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLC 324
+PVA +Y M ED + + + D + ++ + +PR+ +
Sbjct: 210 TPVAACFYEMKQAKAGAEDSDGRASGRGRSRSGRGRVD-----ANEEESNATRPRSAS-G 263
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
E V +R FT+ES G L +F +A+ + ++
Sbjct: 264 NHSHEPHRETVNEVIAKRDTSSVRFTVESIGQLYAVDVFRQALILFAERI 313
>gi|312137109|ref|YP_004004446.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
gi|311224828|gb|ADP77684.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
Length = 264
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 143/298 (47%), Gaps = 57/298 (19%)
Query: 87 DMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---- 142
+++F + G+D + NA RR + E+P +AIE + I NTS + DE+LAHRLGLIP+
Sbjct: 12 EIKFTIDGVDTSFVNALRRASMTEVPKLAIEYIRIVTNTSRMYDEMLAHRLGLIPLRSNE 71
Query: 143 -IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
IV L + D K ++ F L ++ GP +
Sbjct: 72 KIVGNLLMPEECDCDKYCAKCSVSFTL----KKQGPCVVY-------------------- 107
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGKT 260
S DL+P S+ I+P+ +I I +L ++IELEA A G+GK
Sbjct: 108 ----------------SGDLVP--SDPEIKPVYENIPIIKLEEDEKIELEAIAQLGLGKK 149
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW P Y+ P+I++ + ++ + ++ CP +V + + K + A
Sbjct: 150 HAKWRPTTACGYKYYPKIIIKDTC--DNCQACIEECPKDV-----LKANKDTIKIENIEA 202
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVI 378
C+LCR C R E + +S++ + + FIF +E+ G++ P + +A + K + +I
Sbjct: 203 CSLCRACERICE--NESISVQYIDNKFIFKMETDGSMPPREILNKACDSIIKKADEII 258
>gi|432329920|ref|YP_007248063.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
gi|432136629|gb|AGB01556.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
Length = 276
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 142/316 (44%), Gaps = 54/316 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+E L F L G A ANAFRR +I E+PT+AIE V I +NTS + DE+LAH
Sbjct: 1 MEIEFASLDDSLARFTLSGASPAFANAFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ D ++ S DT C GG +
Sbjct: 61 RLGLIPLKTDLSVY---STQDT--------------CSCGG----------------AGC 87
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
P T + PR TS DL+P+ + P+ D I I +L GQ++ +EA A+
Sbjct: 88 PGCTATYTLSVEGPRMVTS----SDLIPQ--DPGAAPVYDNIPIVKLTKGQKLVIEARAI 141
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK--- 311
G+ HAKW Y+ P ++ + DV D V+ CP ++ + GKK
Sbjct: 142 LNTGRAHAKWQSTLVCGYKNHP-VITVSDVCDA-CGMCVEECPRDIL----VAKGKKVQV 195
Query: 312 -RATVAQPRACTLC-RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ + C LC R CL G E + I D FIF +ES G+L + + A+
Sbjct: 196 AEGKLPECSMCRLCERACLASGIGEEPAIKISAEPDRFIFVVESDGSLPAKEIMNRALSF 255
Query: 370 LE---DKCERVITELS 382
+ D+ E+ + ELS
Sbjct: 256 IREQADELEQQLGELS 271
>gi|307352912|ref|YP_003893963.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307156145|gb|ADN35525.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 274
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 143/310 (46%), Gaps = 57/310 (18%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL +D F L A AN FRR +I E+PT+AIE VLI +N S + DE+LAHRLGLIP
Sbjct: 7 RLDEDIARFTLKDATPAFANTFRRTMIGEVPTLAIEDVLIYDNNSALFDEMLAHRLGLIP 66
Query: 142 IIVDPRLFEYMSENDTSNEKNT---IVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
I D + SE E + +F L V GP TV +++L +P
Sbjct: 67 IKTDLSEYVKKSECSCGGEGCSSCQAIFTLSV----EGPG-TVHSSDL--------IP-- 111
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
++P + P +DI + +L Q++ LEA A IG
Sbjct: 112 ----ADPRATPVN----------------------MDIPVVKLEKDQKVVLEARAELNIG 145
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
HAKW P Y+ P I + D + V+ CP NV + GKK +A
Sbjct: 146 DEHAKWEPTLACGYKAYPVITI--DDRCDACGNCVEECPRNVLRV-----GKKSVEIADG 198
Query: 319 RA--CTLCR----ECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ C++CR C+ G +S++ F+F +ES G+L + + T A+ I++D
Sbjct: 199 KLEDCSMCRLCEKACMASGIGDRPAISVKPDNTRFLFVVESDGSLPVKEIMTCALGIMKD 258
Query: 373 KCERVITELS 382
K + ++ L+
Sbjct: 259 KSDSLVDVLN 268
>gi|304274348|gb|ADM18921.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274350|gb|ADM18922.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N L F N+ +V V L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDLASFRNHLKVAVNSLSSGAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E + D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLEIKKDADEAPTDLNTVVFGLVARCER 117
>gi|304274362|gb|ADM18928.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N L F N+ +V V L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDLASFRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E + D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLEIKKDADEAPTDLNTVVFGLVARCER 117
>gi|304274360|gb|ADM18927.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N L F N+ +V V L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDLASFRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E + D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLEIKQDADEAPTDLNTVVFGLVARCER 117
>gi|304274352|gb|ADM18923.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274354|gb|ADM18924.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274356|gb|ADM18925.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N L F N+ +V V L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDLASFRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E + D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLEIKKDADEAPTDLNTVVFGLVARCER 117
>gi|288931228|ref|YP_003435288.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
gi|288893476|gb|ADC65013.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
Length = 262
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 154/311 (49%), Gaps = 53/311 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+VE++ + ++F L D ANA+RR + + +PT+A++ V NTS++ DE++AH
Sbjct: 1 MKVEILSEEELKIKFILKDSDYVFANAWRRAMKSLVPTLAVDYVDFYLNTSLLYDEIIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+GLIP+ D + F+ +CE G PN ++
Sbjct: 61 RIGLIPLKTDLERYN---------------FQDKCVCEGEG------------CPN-CQV 92
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
L + P+T S DL+P+ + ++P+ D I I L GQ++ LEA A
Sbjct: 93 SLRLNVEG-----PKT----VYSGDLIPD--DPEVKPVYDNIPIVELYEGQQLMLEAVAR 141
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G GK HAK+ PV+ +Y+++P I + ED K V CP NV + + +
Sbjct: 142 LGTGKEHAKFQPVSICYYKIIPRIEITEDC--NLCMKCVDACPRNV-----LKNDNGKVV 194
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
V C++CR+C+R E + I D F+FT+E G L T+ +A++IL++K
Sbjct: 195 VENVLECSMCRDCVRVCE--ANAILIEETGD-FLFTVEGVGQLPVRTVMRKALEILKEKA 251
Query: 375 E---RVITELS 382
E R++ ELS
Sbjct: 252 EEANRILEELS 262
>gi|147919298|ref|YP_686966.1| DNA-directed RNA polymerase subunit D [Methanocella arvoryzae
MRE50]
gi|110622362|emb|CAJ37640.1| DNA-directed RNA polymerase, subunit D [Methanocella arvoryzae
MRE50]
Length = 262
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 139/302 (46%), Gaps = 47/302 (15%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++E+I L +F L + A AN RR +IA++P MAI+ V I +NTSV+ DE+LA
Sbjct: 1 MKLEIIELKDRKAKFVLTDVTPAFANGLRRAMIADVPKMAIDYVDIYDNTSVLFDEMLAL 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ + +++ SE + C+ G L T L +E
Sbjct: 61 RLGLIPLKTNLDMYQLQSECE---------------CKGAGCSLCQVT-----LSVSAEG 100
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P SS P T +P +N P I L GQ++ A
Sbjct: 101 PCVVHSSDMKSSDPET----------VPVDNNIP--------IIELKQGQKVVASGTARL 142
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G K HAK+ PV A Y+ +P IV + D D+ + + CP VF IE K + V
Sbjct: 143 GFTKEHAKYQPVCAAGYKNVP-IVTVSDKCDQ-CKACIDECPRGVFKIE-----KNKLVV 195
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
C++C+ C+ + VS K FIFT+E+ G+ S + + T A K ++D+
Sbjct: 196 TDQYKCSMCKLCVDVCDAGAIDVSAD--KKAFIFTVETDGSYSAQEIITRAAKSMKDRAA 253
Query: 376 RV 377
++
Sbjct: 254 KL 255
>gi|88687066|emb|CAJ43894.1| RNA polymerase I subunit RPC40 [Trypanosoma brucei brucei]
Length = 337
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 136/289 (47%), Gaps = 34/289 (11%)
Query: 91 DLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE 150
D+ + +AN FRR+++ E+P A +++LI +N V+ DE+LAHR+GL+P+ +
Sbjct: 54 DMDNVSPPVANMFRRLMLTEVPAFAFDRILIEHNDGVVPDELLAHRIGLVPLAGPVSSMQ 113
Query: 151 YMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
Y++++ D + + ++F+L V +R P +V + LKW P + L + + +
Sbjct: 114 YITDSASVGFDNLDPERVLLFELDVTAKRDVPTTSVYSGHLKWQPIAKQEELAARSEDD- 172
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
R + + P DI + RLGPGQ ++L A A+KGIG HAKW+
Sbjct: 173 ----RVFL----------------VHP--DIVLTRLGPGQRLKLRAIAIKGIGAVHAKWT 210
Query: 266 PVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
PVA +Y M ED + + + D + ++ + +PR+ +
Sbjct: 211 PVAACFYEMKQAKAGAEDSDGRASGRGRSRSGRGRVD-----ANEEESNATRPRSAS-GN 264
Query: 326 ECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
E V +R FT+ES G L +F +A+ + ++
Sbjct: 265 HSHEPHRETVNEVIAKRDTSSVRFTVESIGQLYAVDVFRQALILFAERI 313
>gi|395645094|ref|ZP_10432954.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
gi|395441834|gb|EJG06591.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
Length = 274
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 138/304 (45%), Gaps = 51/304 (16%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++E R+ D F L G A AN RR +I E+PT+AIE + I +N+SV+ DE+LAH
Sbjct: 1 MQIEFARIDSDSARFVLSGATPAFANTLRRAMIGEVPTLAIEDLRIYDNSSVLFDEILAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIPI D L ++ ++ S E G+
Sbjct: 61 RLGLIPIKTD--LTRFVKQDRCSCE-------------------------------GAGC 87
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPML-DITIARLGPGQEIELEAHA 253
PL + + P S DL+ S++P RP+ DI I +L GQ++ LEA A
Sbjct: 88 PLCSVTFTMSVEGP----GIVYSGDLI---SDDPETRPVHDDIPIVKLFEGQKVVLEARA 140
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
V G HAKW V Y+ P I + E+ + + CP V +++ K R
Sbjct: 141 VLNTGTEHAKWQAVTACGYKTYPVITITENC--DACGMCIDECPRGVLELK---GRKARV 195
Query: 314 TVAQPRACTLC----RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ C+LC + CL G E +SI FIF +ES G+L T+ + ++
Sbjct: 196 VDGKLEECSLCKLCEKACLTTGIGLEPAISIGSDTSRFIFVVESDGSLPVPTIIEKGLEY 255
Query: 370 LEDK 373
+ ++
Sbjct: 256 IRNQ 259
>gi|342185050|emb|CCC94532.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 258
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 136/299 (45%), Gaps = 75/299 (25%)
Query: 103 FRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEN-----DT 157
FRR++I E+P +A ++VLI N V+ DEVL HR+GLIP+ +Y++++ D
Sbjct: 2 FRRLMITEVPVLAFDRVLIEENDGVVPDEVLCHRIGLIPLAGPVTWMKYITDSHSVTIDN 61
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+ + +VF+L V + G +V + +LKW P S+ + K + N R +
Sbjct: 62 LDPAHVLVFELDVEGQHGVQATSVYSGDLKWRPLRSQEEVAAKSEDN-----RVFL---- 112
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+ P DI + RLGPGQ ++L A A+KGIG HAKWSPVA +Y + E
Sbjct: 113 ------------VHP--DIVLTRLGPGQRLKLRAIAIKGIGVVHAKWSPVAACFYEIRHE 158
Query: 278 IV---------------LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
V L D ++E+AE + P + ++ + K R V
Sbjct: 159 AVRKEEETRPKRHSSRHLRHDADNEEAEDVDLGSPASARGANNVSTQKGREIVR------ 212
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
FT+ES G LS +F A+++ ++ +++++
Sbjct: 213 --------------------------FTVESVGQLSAADVFRHALRLFIERMRDLVSQV 245
>gi|269860308|ref|XP_002649876.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
gi|220066716|gb|EED44189.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
Length = 282
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 138/311 (44%), Gaps = 59/311 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F N+ V +I+ +EFDLI A++NA RRIL +E+ A V I+ N S+ DE
Sbjct: 29 FVNDLHVRIIKHEGLSLEFDLINSTPALSNALRRILTSEIRWYAFHDVFISQNDSIFPDE 88
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LAHR+GLIP+ + S T+ + L V N
Sbjct: 89 YLAHRIGLIPVKLKA-----------SETFQTVDYYLKV-------------------SN 118
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
++ + +S S T F +D+L I +L P I ++
Sbjct: 119 NTKETINVYSNSIVS----TIEIFDIQKDVL---------------ICKLAPKNTISMKL 159
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
+GIGKTH KWSPVA +R+LP I L EDA +L C V +I +
Sbjct: 160 RIAEGIGKTHVKWSPVALCTFRLLPHIKLNRKFTGEDAVRLKNACSQGVIEIVN-----D 214
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL-SPETLFTEAVKIL 370
A V PR T+ RE LR E + V + RV H+ F +E G L +P + +A+ +L
Sbjct: 215 EAFVKNPRLETMSREVLR--EFSDGSVELSRVAGHYCFCVE--GLLENPLVILQKAILVL 270
Query: 371 EDKCERVITEL 381
++K + +L
Sbjct: 271 KEKATNLSNQL 281
>gi|307108317|gb|EFN56557.1| hypothetical protein CHLNCDRAFT_144215 [Chlorella variabilis]
Length = 283
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 140/312 (44%), Gaps = 62/312 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+VE+ +LT D EF L G D ++ANA RRI++ E+PT+AIE V NT+V+ DE LAHR
Sbjct: 11 QVELRKLTDDYCEFVLKGTDVSMANALRRIILVEVPTIAIELVEFEANTTVLNDEFLAHR 70
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLI P ++ + +++K +
Sbjct: 71 LGLI------------------------------------PLVSTRVHDMKSI------- 87
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
E + + + + R Y D R I + ++ QE++L A A KG
Sbjct: 88 YEAQVGAWVARRRRHYIHPVGYHD----------REDKGILLVKMRRNQELKLRAVARKG 137
Query: 257 IGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
GK HAKW PVAT Y+ +PEI L++ + D+ E+ P F + + R
Sbjct: 138 TGKDHAKWMPVATCVYQFMPEITINHALMDTLTDDQKEEWCAADPRKTFRLNKLTH---R 194
Query: 313 ATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
V P E L EE K V+I++ +D FIF +E TG L P+ + A ++L
Sbjct: 195 VEVTNPELYQYDGEVLAKAEEMGKPGLVAIKQKQDTFIFRVEGTGVLPPQDIVLTACEVL 254
Query: 371 EDKCERVITELS 382
K + L+
Sbjct: 255 ASKIRNLDAALA 266
>gi|304274364|gb|ADM18929.1| putative DNA-directed RNA polymerase III [Sporidiobolus johnsonii]
Length = 171
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N +D F ++ V V +L+ +EFDL+G+DA++ANA RRI+IAE+PT+AIE V +
Sbjct: 4 GESNHWDIDSFRSHLNVAVNKLSAAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLELKKAADEAPTDLNTVVFGLVARCER 117
>gi|304274366|gb|ADM18930.1| putative DNA-directed RNA polymerase III [Sporidiobolus johnsonii]
Length = 171
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G N +D F ++ V V +L+ +EFDL+G+DA++ANA RR++IAE+PT+AIE V +
Sbjct: 4 GESNHWDIDSFRSHLNVAVNKLSAAAIEFDLVGVDASVANAIRRVVIAEVPTVAIETVYV 63
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS-NEKNTIVFKLHVLCER 174
NNTS+IQDEVLA RLGLIP+ +DPR E D + + NT+VF L CER
Sbjct: 64 WNNTSIIQDEVLAQRLGLIPLAIDPRKLELKKAADEAPTDLNTVVFGLVARCER 117
>gi|399216931|emb|CCF73618.1| unnamed protein product [Babesia microti strain RI]
Length = 324
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 147/310 (47%), Gaps = 47/310 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+++ +LT D ++F L D +ANA RRI+++E+P +AIE V + N + + DE +AHRL
Sbjct: 12 IDITQLTVDTIKFTLHNSDVTLANALRRIMLSEIPCLAIEIVTVLENDTPLHDEYIAHRL 71
Query: 138 GLIPIIVDPRL--FEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
GL+P I R+ FEY + S++ K T+ + L V C P TV L +P+
Sbjct: 72 GLLP-IDSTRISEFEYRDKCSCSDKCSKCTVDYNLQVTCTE--PFRTV--THLDIIPDEY 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ PL PR S D +P I ++ Q I L+ A
Sbjct: 127 DTPLPL---------PR-------SGDGIP--------------IVKIRRDQSIHLKLTA 156
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKW VA Y++ P ++ +D + +CP + ED G
Sbjct: 157 TKGIGKLHAKWV-VANVAYQIEPLFKINSEMMGRTTQQDRATIASSCPRGILVSEDDNYG 215
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH--FIFTIESTGALSPETLFTEAV 367
V C C C+ ++ + IR D F F++ESTGA++PE + A+
Sbjct: 216 GT-IRVTNSLECIYCDSCINTCKDLGFKGLIRIEPDETKFHFSVESTGAIAPEKIVEMAL 274
Query: 368 KILEDKCERV 377
LEDK +++
Sbjct: 275 GFLEDKIKQL 284
>gi|332796346|ref|YP_004457846.1| RNA polymerase D subunit [Acidianus hospitalis W1]
gi|332694081|gb|AEE93548.1| Archaeal RNA polymerase D subunit [Acidianus hospitalis W1]
Length = 260
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 135/303 (44%), Gaps = 52/303 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++VI+ + + L G NA RR + +P MA++ V I N S + DE+LAHRL
Sbjct: 2 IDVIKKEGNFISLSLDGYPLEFVNAIRRACMLYVPVMAVDDVYIIENNSPLYDEILAHRL 61
Query: 138 GLIPIIVDPRLFEYMSENDTSNEK---NTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP D + Y + +N + + K+++ E + V + ++K
Sbjct: 62 GLIPFSSDEAIDHYRPSEECANCQENCDGCFSKIYLDVEAKDSEVMVYSKDIK------- 114
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
P P SK DI I LG Q++ LEA
Sbjct: 115 ---SDDPAVVPISK--------------------------DIPIVLLGKNQKVSLEARLR 145
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G HAK++PV A R P I +++D+ K + CP VF ++D +
Sbjct: 146 LGYGIEHAKFNPVTIAVLRYYPHI----ELKDDSCVKAAEVCPEKVFAVKD-----GKLV 196
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
+A ACTLC ECLR + + + I V++ +I IES G+L PE + EA K + K
Sbjct: 197 IANEIACTLCEECLR----YCEGIKISSVENKYILEIESVGSLKPERILLEAGKSIVRKL 252
Query: 375 ERV 377
E +
Sbjct: 253 EEL 255
>gi|389860853|ref|YP_006363093.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
gi|388525757|gb|AFK50955.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
Length = 282
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 136/300 (45%), Gaps = 41/300 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV+R + + + G+ + N+ RR ++AE+PTMA++ V+ N+SV DE +AHRL
Sbjct: 3 IEVLRREGNAIRLLVRGVKLHVLNSIRRAILAEVPTMAVDYVVFMENSSVFYDEYIAHRL 62
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIP+ + L +Y + VF + L
Sbjct: 63 GLIPLTSENALGKYKPPEECREAGEKGVFSEDCF-----------------------VKL 99
Query: 198 ETKPDSNPSSKPRTYTS--FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
E + P Y + D+ P + PI +L+ Q I+LEA+A
Sbjct: 100 ELSGEGTPGGVKTLYAGDLVTGDPDVRPVYEKIPIVQLLE--------NQRIKLEAYARL 151
Query: 256 GIGKTHAKWSPVATAWYRMLPEI-VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G+ H KWSP + A ++ + +I + E +K V+ CP V +D G
Sbjct: 152 GRGREHIKWSPASVASHKYIAKINIDREKCRYPGCKKCVEICPKQVIVEKD---GTVEVE 208
Query: 315 VAQPRACTLCREC-LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
A+ C+LCR C C E +++ +D +I ESTG+L+P+ + EA + LEDK
Sbjct: 209 EARLMDCSLCRLCETVCPSEA---INVSYKEDEYILYFESTGSLTPKRILIEATRALEDK 265
>gi|288560165|ref|YP_003423651.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
gi|288542875|gb|ADC46759.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
Length = 282
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 40/308 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++V + ++ M F + + NA RRI + +P +AIE V I N S + DEVLAHRL
Sbjct: 3 IDVKKQDENSMVFIVRDAEVPFINAIRRIAMMRVPKLAIEDVFIVKNDSAMFDEVLAHRL 62
Query: 138 GLIPIIVDPRLFE--YMSEN-DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GL P++ D E M E+ D ++++N ++ G
Sbjct: 63 GLTPLVSDLESIEGLVMREDCDCNHDENG-----------------------NYVDKGEY 99
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHA 253
P + S + P+ S L ++ I+P+ D I + +L Q++ELEA A
Sbjct: 100 CPRCSVSFSLNETGPKVVYSRD-----LKSCGDSRIKPVYDTIPLLKLKEDQDVELEAVA 154
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE-DIGSGKKR 312
GIGK HAKW P Y+ PEI E ++ ++ CP NV D D G
Sbjct: 155 KLGIGKEHAKWVPTTVCAYKQYPEITFNEG--EDVVYQVADACPRNVLDANRDDGV---- 208
Query: 313 ATVAQPRACTLCRECLRCGE-EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
V C+LC+ C+R + K +++ ++ FIF IE+ G++ P+ + +A +L+
Sbjct: 209 IEVIDIENCSLCKTCVRTAKAAGSKFINVGYRENDFIFKIETDGSMPPKEVLLKACDVLD 268
Query: 372 DKCERVIT 379
K + IT
Sbjct: 269 AKTDEFIT 276
>gi|221114057|ref|XP_002158521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Hydra
magnipapillata]
Length = 273
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 133/310 (42%), Gaps = 58/310 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV+++ T D+++F L D ++AN+ RRI IAE+PT+AI+ V I NNTSV+ DE +AHR
Sbjct: 8 RVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDEFIAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+GLIP+ D ++ + D + ++ ++ F L V C R + + P
Sbjct: 68 IGLIPLTSDEKVDKMCYSRDCTCSEFCDECSVKFTLDVKCTGETTRHVTSRDLISEDPKV 127
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ K D T + + +I I +L GQE++L A
Sbjct: 128 IPVTSRIKDDD---------TGYGETD---------------EIVIVKLRKGQELKLHAF 163
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A KG GK HAKW+P A + P+ L +
Sbjct: 164 AKKGFGKEHAKWNPTAGVSFEYDPDNAL------------------------------RH 193
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
T A+P +++E I D F F +ES G+L PE + + +L+
Sbjct: 194 TTFARPDQWPKSEYSQLDEDQYEAPYDIHAKADKFYFNVESCGSLKPENIVMTGISVLKK 253
Query: 373 KCERVITELS 382
K + T S
Sbjct: 254 KLSELQTHHS 263
>gi|168029877|ref|XP_001767451.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681347|gb|EDQ67775.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 150/315 (47%), Gaps = 52/315 (16%)
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
+++ + F L D ++AN+ RR ++ E+PT+A + V I N+SV+ DE +AHRLGLIP+
Sbjct: 34 SRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSSVLTDEFIAHRLGLIPLT 93
Query: 144 VDPRLFE--YMSENDT-----SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
D R E + SE D+ S + T+ F L V + V +LK N + +P
Sbjct: 94 SD-RAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIK-DVTQRDLKS-SNDAVVP 150
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+E D Q +L E +DI IA+L GQEI L A A KG
Sbjct: 151 VEIDVD---------------KQGVLEECK-------MDICIAKLYKGQEITLRALAKKG 188
Query: 257 IGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKT-----------CPVNVF 301
+G HAKWSPVAT + PEI + +E + + + V++ P +
Sbjct: 189 MGSLHAKWSPVATVTFHHEPEIYINEEKMEALTLAEKQNWVESSLDLPQNQSFPVPATLV 248
Query: 302 DIEDIGSGKKRATVAQPRACT---LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALS 358
+ + + V P A T L R G + V I D FIF++ESTGA++
Sbjct: 249 KVFKLDPATSKVMVVSPGAYTSQELQRNVEAAG--MAELVEIAWRDDSFIFSVESTGAIA 306
Query: 359 PETLFTEAVKILEDK 373
P + +AV IL+ K
Sbjct: 307 PAKICVDAVNILKKK 321
>gi|294495898|ref|YP_003542391.1| DNA-directed RNA polymerase, subunit D [Methanohalophilus mahii DSM
5219]
gi|292666897|gb|ADE36746.1| DNA-directed RNA polymerase, subunit D [Methanohalophilus mahii DSM
5219]
Length = 266
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 142/301 (47%), Gaps = 53/301 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++++ L+ F L +DAA AN RR ++A++PT+AI++V I NNTSV+ DE +A RL
Sbjct: 3 IDILELSDRSARFILSDVDAAFANGLRRAMLADVPTLAIDEVNIYNNTSVLYDEQIALRL 62
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
L+P++ +F + ++ + CE G P TV L +
Sbjct: 63 ALVPLVT---IFNEFTPHEECS------------CEEGCPACTVSLT----------LSV 97
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIARLGPGQEIELEAHAVK 255
E D + + Y S DL+ S +P D I + +L GQ++ LE A
Sbjct: 98 EAPMDEDKT----VY-----SGDLV---SADPKIKAADSNIAVVKLKGGQQLVLEGIAKM 145
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED-AEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G HAKW Y+ +P I ++E D EK V CP ++ + GK+ A
Sbjct: 146 GYGHDHAKWQAGVACGYKNVPVI----EIEGCDLCEKCVSACPRDILTL-----GKESAE 196
Query: 315 VAQPRA--CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
V R C+LC++C+ + +S+ FIFT+ES G+ S E L AV +
Sbjct: 197 VVDDRLLNCSLCKQCVAACD--IDAISVSENNTSFIFTLESDGSYSAEELIINAVNTIRT 254
Query: 373 K 373
K
Sbjct: 255 K 255
>gi|383319963|ref|YP_005380804.1| DNA-directed RNA polymerase subunit D [Methanocella conradii HZ254]
gi|379321333|gb|AFD00286.1| DNA-directed RNA polymerase, subunit D [Methanocella conradii
HZ254]
Length = 262
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 135/298 (45%), Gaps = 47/298 (15%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++E++ L F L G+ A +NA RR ++A++P MAI+ V I +NTSV+ DE+LAH
Sbjct: 1 MKLEILDLGDRKARFILSGVTPAFSNALRRAMLADIPKMAIDYVDIYDNTSVMFDEMLAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ + +++ E D C+ G L T L +E
Sbjct: 61 RLGLIPLKTNLNMYKLKEECD---------------CKGAGCALCQVTFTLS-----AEG 100
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P SS P T +P N P I L GQ++ L A A
Sbjct: 101 PCMVHSRDLKSSDPET----------VPADDNIP--------IIELKEGQKLVLTAVARL 142
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G GK HAK+ PV Y+ +P I + E + ++ V+ CP VF ++ K + V
Sbjct: 143 GHGKEHAKFQPVCPPGYKYVPIIEISEKC--DSCKQCVEACPRGVFAVD-----KNKVVV 195
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
P C++C C+ + +VS FIF++E+ G+ S + T A + K
Sbjct: 196 VSPYECSMCELCMEACDINAIKVSADNTA--FIFSVETDGSFSAGEVVTRAADAIRAK 251
>gi|389593679|ref|XP_003722088.1| DNA-directed RNA polymerase I-like protein [Leishmania major strain
Friedlin]
gi|321438586|emb|CBZ12345.1| DNA-directed RNA polymerase I-like protein [Leishmania major strain
Friedlin]
Length = 337
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 146/326 (44%), Gaps = 60/326 (18%)
Query: 76 FRVEVIRLTKDD------MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
R+E++ K++ + F L +D++ ANA RR+++AE+PT+AIE V I NTSV+
Sbjct: 1 MRLEIVECVKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLP 60
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
DE++AHRLGL+P+ S + + F C G T LK
Sbjct: 61 DEMIAHRLGLVPLF--------------SEKAKRLNFPQDCGCGGSGCPDCQITGSLKV- 105
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML----DITIARLGPGQ 245
P ++ D L + + + P+ I + LG Q
Sbjct: 106 ----------------QCPPNQHSKQVFIGDSL-QIDDAEVYPVSAEEHGIWLVTLGRSQ 148
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVF 301
++L K I KTHAK+ PVAT R PEI+L + + A + V CP NVF
Sbjct: 149 VLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVF 208
Query: 302 D-IEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK----RVSIRRVKDH-----FIFTI 351
+E G + V AC CREC +++ V +R+ K+ F FT+
Sbjct: 209 RFVERTG----QVEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTV 264
Query: 352 ESTGALSPETLFTEAVKILEDKCERV 377
ESTG L + +AV ++ K +RV
Sbjct: 265 ESTGVLPVLQIVYDAVAVVRKKLQRV 290
>gi|154151761|ref|YP_001405379.1| DNA-directed RNA polymerase subunit D [Methanoregula boonei 6A8]
gi|154000313|gb|ABS56736.1| DNA-directed RNA polymerase [Methanoregula boonei 6A8]
Length = 276
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 137/314 (43%), Gaps = 63/314 (20%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+E L F L G AN+FRR +I E+PT+AIE V I +NTS + DE+LAH
Sbjct: 1 MEIEFASLDDTVARFTLSGAQPGFANSFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKN-----TIVFKLHVLCERGGPRLTVKTNELKWLP 190
RLGLIPI D L Y ++ D S T+ + L V GP+L
Sbjct: 61 RLGLIPIRTD--LTSYSTQGDCSCGGAGCPSCTVTYTLSV----EGPKLV---------- 104
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIEL 249
+S DL+P+ + P+ D I I +L GQ++ +
Sbjct: 105 --------------------------TSSDLIPQ--DPQAAPVSDNIPIVKLIKGQKLVI 136
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
EA AV GK HAKW P Y+ P I + + V CP + ++
Sbjct: 137 EARAVLNKGKVHAKWQPTLVCGYKNYPVITISPTC--DACGMCVDECPRTILALKG---- 190
Query: 310 KKRATVAQPR-----ACTLC-RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
K+ V + R C LC R CL G E + I D +IF++ES G+L + +
Sbjct: 191 -KKVEVIEGRLPDCSMCKLCERACLASGIGEEPAIRISAEPDRYIFSVESDGSLPVKEIM 249
Query: 364 TEAVKILEDKCERV 377
+A+ ++ + E +
Sbjct: 250 VQALGFVKAQAEEL 263
>gi|401416108|ref|XP_003872549.1| DNA-directed RNA polymerase I-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488773|emb|CBZ24020.1| DNA-directed RNA polymerase I-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 337
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 146/326 (44%), Gaps = 60/326 (18%)
Query: 76 FRVEVIRLTKDD------MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
R+E++ K++ + F L +D++ ANA RR+++AE+PT+AIE V I NTSV+
Sbjct: 1 MRLEIVECVKNEHAAGETLTFQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLP 60
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
DE++AHRLGL+P+ S + + F C G T LK
Sbjct: 61 DEMIAHRLGLVPLF--------------SGKAKRLNFPQDCGCGGSGCPDCQITGSLKV- 105
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML----DITIARLGPGQ 245
P ++ D L + + + P+ I + LG Q
Sbjct: 106 ----------------QCPPNQHSKQVFIGDSL-QIDDAEVYPVSAEEHGIWLVTLGRSQ 148
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVF 301
++L K I KTHAK+ PVAT R PEI+L + + A + V CP NVF
Sbjct: 149 VLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNLNGFQTLGKAKAREWVARCPRNVF 208
Query: 302 D-IEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK----RVSIRRVKDH-----FIFTI 351
+E G + V AC CREC +++ V +R+ K+ F FT+
Sbjct: 209 RFVERTG----QVEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTV 264
Query: 352 ESTGALSPETLFTEAVKILEDKCERV 377
ESTG L + +AV ++ K +RV
Sbjct: 265 ESTGVLPVLQIVYDAVAVVRKKLQRV 290
>gi|282164928|ref|YP_003357313.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
gi|282157242|dbj|BAI62330.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
Length = 262
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 139/293 (47%), Gaps = 47/293 (16%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++E++ L +F L + A ANA RR ++A++P MAI+ V I +NTSV+ DE+LAH
Sbjct: 1 MKLEILELGDRKAKFVLSEVTPAFANAVRRAMLADIPKMAIDYVDIYDNTSVMFDEMLAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+GLIPI + +++ E D E + ++ GP + V + ++K
Sbjct: 61 RMGLIPIKTNLDMYKLREECDCKGEGCALC-QVSFTLSAEGPCM-VHSRDMK-------- 110
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS D +P N P I L Q++ L A A
Sbjct: 111 --------------------SSDPDTVPADDNVP--------IIELKERQKVVLTAVARL 142
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G GK H+K+ PV Y+ +P I+ + D D ++ V+ CP VF ++ K + V
Sbjct: 143 GRGKEHSKFQPVCPPGYKYVP-IIEISDKCDS-CKQCVEQCPRGVFAVD-----KNKVVV 195
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
P C++C ECL + ++SI FIF +E+ G+ S + + T AV+
Sbjct: 196 DNPYNCSMCEECLEACDLKAIKLSIDNTA--FIFMVETDGSYSAQEIITRAVE 246
>gi|15897038|ref|NP_341643.1| DNA-directed RNA polymerase subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|284173382|ref|ZP_06387351.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus 98/2]
gi|384433538|ref|YP_005642896.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
gi|2500627|sp|P95989.1|RPOD_SULSO RecName: Full=DNA-directed RNA polymerase subunit D
gi|167013264|pdb|2PA8|D Chain D, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
gi|167744884|pdb|2PMZ|D Chain D, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744895|pdb|2PMZ|S Chain S, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782146|pdb|3HKZ|D Chain D, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782159|pdb|3HKZ|O Chain O, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|1707823|emb|CAA69531.1| DNA-directed RNA polymerase subunit D [Sulfolobus solfataricus P2]
gi|13813203|gb|AAK40433.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|261601692|gb|ACX91295.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
Length = 265
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 137/299 (45%), Gaps = 52/299 (17%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KDD DL+ G NA RR + +P MA++ V N S + DE+LAHRL LI
Sbjct: 6 LHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALI 65
Query: 141 PIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P + + L Y E +N CE+ ++ ++ PN
Sbjct: 66 PFMSEEALDTYRWPEECIECTEN---------CEKCYTKIYIEAEA----PN-------- 104
Query: 200 KPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
+PR Y+ S+D P S PI DI I LG Q+I LEA G G
Sbjct: 105 --------EPRMIYSKDIKSED--P--SVVPISG--DIPIVLLGTNQKISLEARLRLGYG 150
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K HAK+ PV+ + R P++ +L + EK V CP VF+++D + +V
Sbjct: 151 KEHAKFIPVSLSVVRYYPKVEIL-----ANCEKAVNVCPEGVFELKD-----GKLSVKNE 200
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+CTLC ECLR + I V+D +I IES G+L PE + EA K + K E +
Sbjct: 201 LSCTLCEECLR---YCNGSIRISFVEDKYILEIESVGSLKPERILLEAGKSIIRKIEEL 256
>gi|392574290|gb|EIW67427.1| hypothetical protein TREMEDRAFT_45370 [Tremella mesenterica DSM
1558]
Length = 361
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 114/210 (54%), Gaps = 14/210 (6%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N RV V LTKD++ F+L G++ A+AN+ RR+++A++PT+ I++VL A NTS I DE+L
Sbjct: 23 NQPRVLVRSLTKDEVNFNLSGMELALANSIRRVMMADVPTVCIDQVLFAQNTSPIPDEML 82
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERG--GPRLTVKTNELK 187
AHRLG++P+I +D ++ T+ +L V G G + + +N L+
Sbjct: 83 AHRLGMVPLISRNVSKGLRRTSDCDCDEGCYYCTVTLRLKVSYTHGERGKFMPITSNMLE 142
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+PN P PD +P + + + P N+P P I +A+L GQEI
Sbjct: 143 VVPN----PYGPPPDLSPDDQ--QVINNRDPELGQPVGKNDPATP--PILLAKLSRGQEI 194
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
+L A GI K HAKWSP++ + P
Sbjct: 195 DLTCKAYSGIAKFHAKWSPLSAVAFEYDPH 224
>gi|11499863|ref|NP_071107.1| DNA-directed RNA polymerase subunit D [Archaeoglobus fulgidus DSM
4304]
gi|3122769|sp|O28002.1|RPOD_ARCFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|2648239|gb|AAB88973.1| DNA-directed RNA polymerase, subunit D (rpoD) [Archaeoglobus
fulgidus DSM 4304]
Length = 264
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 140/303 (46%), Gaps = 54/303 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ ++F L A+AN+FRR + AE+P MA++ V I N+S DEV+AHRL
Sbjct: 5 IEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIAHRL 64
Query: 138 GLIPIIVDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
++PI F SE E I F+L+V GP++ + +
Sbjct: 65 AMLPIKTYLDRFNMQSECSCGGEGCPNCQISFRLNV----EGPKVVYSGDFI-------- 112
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
S D++ N P+ + + GQ++ LEA A
Sbjct: 113 ---------------------SDDPDVVFAIDNIPVLELFE--------GQQLMLEAVAR 143
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G+ HAK+ PV+ Y+++PEIV+ E+ ++ CP NVF+ +
Sbjct: 144 LGTGREHAKFQPVSVCVYKIIPEIVVNENC--NGCGDCIEACPRNVFE-----KDGDKVR 196
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
V AC++C EC+ E +S+ ++F+FT+E TGAL + +A++IL K
Sbjct: 197 VKNVMACSMCGECVEVCE--MNAISVNET-NNFLFTVEGTGALPVREVMKKALEILRSKA 253
Query: 375 ERV 377
E +
Sbjct: 254 EEM 256
>gi|146092793|ref|XP_001466520.1| DNA-directed RNA polymerase I-like protein [Leishmania infantum
JPCM5]
gi|398018535|ref|XP_003862432.1| DNA-directed RNA polymerase I-like protein [Leishmania donovani]
gi|134070883|emb|CAM69559.1| DNA-directed RNA polymerase I-like protein [Leishmania infantum
JPCM5]
gi|322500662|emb|CBZ35739.1| DNA-directed RNA polymerase I-like protein [Leishmania donovani]
Length = 337
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 146/326 (44%), Gaps = 60/326 (18%)
Query: 76 FRVEVIRLTKDD------MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
++E++ K++ + F L +D++ ANA RR+++AE+PT+AIE V I NTSV+
Sbjct: 1 MKLEIVECVKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLP 60
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
DE++AHRLGL+P+ S + + F C G T LK
Sbjct: 61 DEMIAHRLGLVPLF--------------SEKAKRLNFPQDCGCGGSGCPDCQITGSLKV- 105
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML----DITIARLGPGQ 245
P ++ D L + + + P+ I + LG Q
Sbjct: 106 ----------------QCPPNQHSKQVFIGDSL-QIDDAEVYPVSAEEHGIWLVTLGRSQ 148
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVF 301
++L K I KTHAK+ PVAT R PEI+L + + A + V CP NVF
Sbjct: 149 VLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVF 208
Query: 302 D-IEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK----RVSIRRVKDH-----FIFTI 351
+E G + V AC CREC +++ V +R+ K+ F FT+
Sbjct: 209 RFVERTG----QVEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTV 264
Query: 352 ESTGALSPETLFTEAVKILEDKCERV 377
ESTG L + +AV ++ K +RV
Sbjct: 265 ESTGVLPVLQIVYDAVTVVRRKLQRV 290
>gi|321445177|gb|EFX60618.1| hypothetical protein DAPPUDRAFT_71222 [Daphnia pulex]
Length = 129
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 67/87 (77%)
Query: 62 GVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLI 121
G D+S + F ++ ++R+ +MEFDLIG+D AI NAFRRIL++++PTMA +KV +
Sbjct: 43 GFDDSWSFEKFKKRLKINIVRMENMEMEFDLIGVDPAIPNAFRRILLSDIPTMAFDKVFM 102
Query: 122 ANNTSVIQDEVLAHRLGLIPIIVDPRL 148
NNTS+IQDEVLAHRLGLIP+ DPRL
Sbjct: 103 FNNTSIIQDEVLAHRLGLIPLKADPRL 129
>gi|126179746|ref|YP_001047711.1| DNA-directed RNA polymerase subunit D [Methanoculleus marisnigri
JR1]
gi|125862540|gb|ABN57729.1| DNA-directed RNA polymerase, subunit D [Methanoculleus marisnigri
JR1]
Length = 276
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 133/297 (44%), Gaps = 53/297 (17%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL + +F L G+ + AN RR +I+E+PT+AIE V I +NTSV+ DE+LAHRLGLIP
Sbjct: 7 RLDERVAKFTLSGVSMSFANMLRRAMISEVPTLAIEDVRIYDNTSVLFDEMLAHRLGLIP 66
Query: 142 IIVDPRLFEYMSE---NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
+ D + ++ SE D T + L V GP+ TV +++L +
Sbjct: 67 LRTDLKRYKPRSECTCEDAGCPVCTATYTLSV----EGPK-TVYSSDL----------IP 111
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
PD+ P+ + I I L Q++ LEA A+ G G
Sbjct: 112 QDPDAAPADE--------------------------KIPIIELARDQKLVLEAQAIVGTG 145
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K HAKW Y+ P I + D + + CP +V + GK R +
Sbjct: 146 KEHAKWQATTACGYKNYPVIAI--DERCDGCGMCIDECPRSVL---ETAQGKIRVVEERQ 200
Query: 319 RACTLC----RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
C+LC R CL G E + I + FIF +E G++ + A++ ++
Sbjct: 201 ELCSLCRLCERACLAGGIGTEPAIHIGTDAERFIFVVEGDGSIPVREIIERALQYIQ 257
>gi|386001506|ref|YP_005919805.1| DNA-directed RNA polymerase subunit D [Methanosaeta harundinacea
6Ac]
gi|357209562|gb|AET64182.1| DNA-directed RNA polymerase subunit D [Methanosaeta harundinacea
6Ac]
Length = 266
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 140/292 (47%), Gaps = 46/292 (15%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+VE+I L + F L G+ A ANA RR +AE+P++AI+++ I +NTSV+ DE L+
Sbjct: 1 MQVELIELVEGRARFLLRGVTPAFANAIRRACLAEVPSLAIDEISIYDNTSVLFDEQLSL 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+PI D D S +F++ CE GG +
Sbjct: 61 RLGLVPIKAD----------DLS------LFRVPEECECGG----------------AGC 88
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
P + + P T S DL FS+ ++ + + I IA LG G+++ LE
Sbjct: 89 PACQVGMTLSAEGPCTV----HSGDL--RFSDPGVKVVFEKIPIAILGEGEKLMLEGIVT 142
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G HAKW Y+ LPEI + + E K V+ CP V IG G+ +
Sbjct: 143 LNRGTVHAKWQAGTQCGYKNLPEITISDRC--EGCGKCVEVCPRKVL---VIGEGEGKVR 197
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
V P +C+LC+ C+ GE +++ V+D F+ I++ G++ + L T A
Sbjct: 198 VHDPISCSLCKLCI--GECDVGAINVSAVEDVFVMKIDTDGSMPAKDLVTGA 247
>gi|195433589|ref|XP_002064793.1| GK15011 [Drosophila willistoni]
gi|194160878|gb|EDW75779.1| GK15011 [Drosophila willistoni]
Length = 275
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 140/315 (44%), Gaps = 56/315 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCNEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRNQGEEDNE------YGESND--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD------------------------------ 190
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + +P E++E + + F F +ES+GAL PE + V
Sbjct: 191 NSMRHTLYPKPDEWPKSEHSELEDEQFEAPYNWEAKPNKFFFNVESSGALKPENIVVMGV 250
Query: 368 KILEDKCERVITELS 382
++L++K + T+LS
Sbjct: 251 QVLKNKLSNLQTQLS 265
>gi|125984946|ref|XP_001356237.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|195164762|ref|XP_002023215.1| GL21238 [Drosophila persimilis]
gi|54644558|gb|EAL33299.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|194105300|gb|EDW27343.1| GL21238 [Drosophila persimilis]
Length = 275
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 139/315 (44%), Gaps = 56/315 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SNP P T + + E S+ +I I +L GQE+
Sbjct: 122 --------------TSNPKVLPVTSRNQGEEDNEYGESSD-------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P A + P+ +
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNCM--------------------------- 193
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +P +++E + + F F +ES+GAL PE + V
Sbjct: 194 ---RHTLYPKPDEWPKSEHTELEDDQFEAPYNWEAKPNKFFFNVESSGALKPENIVIMGV 250
Query: 368 KILEDKCERVITELS 382
++L++K + T+LS
Sbjct: 251 QVLKNKLSNLQTQLS 265
>gi|195472723|ref|XP_002088649.1| GE18688 [Drosophila yakuba]
gi|194174750|gb|EDW88361.1| GE18688 [Drosophila yakuba]
Length = 275
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 140/315 (44%), Gaps = 56/315 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRNQGEEDNE------YGESND--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD------------------------------ 190
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + +P +++E + + F F +ES+GAL PE + V
Sbjct: 191 NSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESSGALKPENIVVMGV 250
Query: 368 KILEDKCERVITELS 382
++L++K + T+LS
Sbjct: 251 QVLKNKLSNLQTQLS 265
>gi|374628605|ref|ZP_09700990.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
gi|373906718|gb|EHQ34822.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
Length = 274
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 141/315 (44%), Gaps = 67/315 (21%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL ++ +F L G A AN+FRR +I ++PT+AIE V + +N S + DE+L HRLGLIP
Sbjct: 7 RLDENAAKFILKGTTFAFANSFRRAMITDVPTLAIEDVYLYDNNSALFDEILTHRLGLIP 66
Query: 142 IIVDPRLFEYMSENDTS-----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
I D L EY+ ++ S + VF L V GP + +
Sbjct: 67 ITTD--LSEYVRRDECSCGGEGCSQCQAVFTLSV----EGPGIVM--------------- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN-PIRPMLDITIARLGPGQEIELEAHAVK 255
S DL+P+ P+ P DI I +L Q++ LEA A
Sbjct: 106 ---------------------SGDLVPQNPGAVPVNP--DIPIVKLDEDQKVVLEARAEL 142
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G HAKW P Y+ P I + + + K V+ CP NV +G K V
Sbjct: 143 NTGMEHAKWQPTLACGYKAYPVITVSDRC--DGCGKCVEQCPRNVLK-----AGSKAVLV 195
Query: 316 AQPRA--CTLCRECLRC------GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ R C++CR C + G+E RV+ +IF +ES G++ + + A+
Sbjct: 196 IESRLEDCSMCRLCEKACMASDIGDEPAIRVNPH--DSDYIFVVESDGSMPVKDIMIRAL 253
Query: 368 KILEDKCERVITELS 382
I+ +K ++ LS
Sbjct: 254 DIIGNKSRGLVDVLS 268
>gi|237823480|pdb|2WAQ|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823493|pdb|2WB1|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823508|pdb|2WB1|S Chain S, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462791|pdb|2Y0S|D Chain D, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462806|pdb|2Y0S|S Chain S, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260745|pdb|4AYB|D Chain D, Rnap At 3.2ang
gi|400260762|pdb|4B1O|D Chain D, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260781|pdb|4B1P|S Chain S, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814435|gb|ACL36491.1| RNA polymerase subunit 3 [Sulfolobus shibatae B12]
Length = 265
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 134/298 (44%), Gaps = 50/298 (16%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KDD DL+ G NA RR + +P M+I+ V N S + DE+LAHRL LI
Sbjct: 6 LHKDDKRIDLVFEGYPLEFVNAIRRAAMLYVPVMSIDDVYFIENNSPLYDEILAHRLALI 65
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P + L Y + + CE+ ++ ++ L
Sbjct: 66 PFTSEEALDTYRWPEECIDCTEN--------CEKCYTKIYIEAEAL-------------- 103
Query: 201 PDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
++P+ Y+ S+D P S PI DI I LG Q+I LEA G GK
Sbjct: 104 ------NEPKMLYSKDIKSED--P--SIVPISG--DIPIVLLGANQKISLEARLRLGYGK 151
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
HAK+ PV+ A R P++ +L + EK CP VF+++D + +V
Sbjct: 152 EHAKFIPVSLAIVRYYPKVEIL-----GNCEKGATVCPEGVFELKD-----GKLSVKNEL 201
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
ACTLC ECLR + I V+D +I +ES G+L PE + EA K + K E +
Sbjct: 202 ACTLCEECLR---YCNGLIRISSVEDKYILELESVGSLKPERILLEAGKSIIRKIEEL 256
>gi|284998561|ref|YP_003420329.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
gi|284446457|gb|ADB87959.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
Length = 265
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 135/299 (45%), Gaps = 52/299 (17%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KDD DL+ G NA RR + +P M+I+ V N S + DE+LAHRL LI
Sbjct: 6 LHKDDKRIDLVFEGYPLEFVNAIRRATMLYVPVMSIDDVYFIENNSPLYDEILAHRLALI 65
Query: 141 PIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P + L Y E +N CE+ ++ ++ L
Sbjct: 66 PFTSEEALDTYRWPEECIECTEN---------CEKCYTKIYIEAEAL------------- 103
Query: 200 KPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
++P+ Y+ S+D P S PI DI I LG Q+I LEA G G
Sbjct: 104 -------NEPKMLYSKDIKSED--P--SIVPISG--DIPIVLLGANQKISLEARLRLGYG 150
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K HAK+ PV+ A R P++ +L + EK CP VF+++D + +V
Sbjct: 151 KEHAKFIPVSLAIVRYYPKVEIL-----GNCEKAATVCPEGVFELKD-----GKLSVKNE 200
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
ACTLC ECLR + I ++D +I +ES G+L PE + EA K + K E +
Sbjct: 201 LACTLCEECLR---YCNGLIRISSIEDKYILDLESVGSLKPERILLEAGKSIIRKIEEL 256
>gi|227831065|ref|YP_002832845.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|229579946|ref|YP_002838345.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|229581393|ref|YP_002839792.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
gi|259494208|sp|C3MJP7.1|RPOD_SULIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494210|sp|C3NMQ0.1|RPOD_SULIN RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494211|sp|C3N8R8.1|RPOD_SULIY RecName: Full=DNA-directed RNA polymerase subunit D
gi|227457513|gb|ACP36200.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|228010661|gb|ACP46423.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|228012109|gb|ACP47870.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
Length = 265
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 135/299 (45%), Gaps = 52/299 (17%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KDD DL+ G NA RR + +P M+I+ V N S + DE+LAHRL LI
Sbjct: 6 LHKDDKRIDLVFEGYPLEFVNAIRRATMLYVPVMSIDDVYFIENNSPLYDEILAHRLALI 65
Query: 141 PIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P + L Y E +N CE+ ++ ++ L
Sbjct: 66 PFTSEEALDTYRWPEECIECTEN---------CEKCYTKIYIEAEAL------------- 103
Query: 200 KPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
++P+ Y+ S+D P S PI DI I LG Q+I LEA G G
Sbjct: 104 -------NEPKMLYSKDIKSED--P--SIVPISG--DIPIVLLGANQKISLEARLRLGYG 150
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K HAK+ PV+ A R P++ +L + EK CP VF+++D + +V
Sbjct: 151 KEHAKFIPVSLAIVRYYPKVEIL-----GNCEKAATVCPEGVFELKD-----GKLSVKNE 200
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
ACTLC ECLR + I ++D +I +ES G+L PE + EA K + K E +
Sbjct: 201 LACTLCEECLR---YCNGLIRISSIEDKYILELESVGSLKPERILLEAGKSIIRKIEEL 256
>gi|227828307|ref|YP_002830087.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|229585537|ref|YP_002844039.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238620499|ref|YP_002915325.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|385773987|ref|YP_005646554.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
gi|385776629|ref|YP_005649197.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|259494206|sp|C3N054.1|RPOD_SULIA RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494207|sp|C4KJ93.1|RPOD_SULIK RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494209|sp|C3MZ05.1|RPOD_SULIM RecName: Full=DNA-directed RNA polymerase subunit D
gi|227460103|gb|ACP38789.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|228020587|gb|ACP55994.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238381569|gb|ACR42657.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|323475377|gb|ADX85983.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|323478102|gb|ADX83340.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
Length = 265
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 135/299 (45%), Gaps = 52/299 (17%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KDD DL+ G NA RR + +P M+I+ V N S + DE+LAHRL LI
Sbjct: 6 LHKDDKRIDLVFEGYPLEFVNAIRRAAMLYVPVMSIDDVYFIENNSPLYDEILAHRLALI 65
Query: 141 PIIVDPRLFEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
P + L Y E +N CE+ ++ ++ L
Sbjct: 66 PFTSEEALDTYRWPEECIECTEN---------CEKCYTKIYIEAEAL------------- 103
Query: 200 KPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
++P+ Y+ S+D P S PI DI I LG Q+I LEA G G
Sbjct: 104 -------NEPKMLYSKDIKSED--P--SIVPISG--DIPIVLLGANQKISLEARLRLGYG 150
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K HAK+ PV+ A R P++ +L + EK CP VF+++D + +V
Sbjct: 151 KEHAKFIPVSLAIVRYYPKVEIL-----GNCEKAATVCPEGVFELKD-----GKLSVKNE 200
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
ACTLC ECLR + I ++D +I +ES G+L PE + EA K + K E +
Sbjct: 201 LACTLCEECLR---YCNGLIRISSIEDKYILELESVGSLKPERILLEAGKSIIRKIEEL 256
>gi|17137650|ref|NP_477419.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|4490379|emb|CAB38635.1| RNA polymerase II p33 subunit [Drosophila melanogaster]
gi|7298103|gb|AAF53342.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|16767948|gb|AAL28192.1| GH07456p [Drosophila melanogaster]
gi|220944002|gb|ACL84544.1| RpII33-PA [synthetic construct]
gi|220953902|gb|ACL89494.1| RpII33-PA [synthetic construct]
Length = 275
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 56/315 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRNQGEEDNE------YGESND--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD------------------------------ 190
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + +P +++E + + F F +ES GAL PE + V
Sbjct: 191 NSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESAGALKPENIVVMGV 250
Query: 368 KILEDKCERVITELS 382
++L++K + T+LS
Sbjct: 251 QVLKNKLSNLQTQLS 265
>gi|409044983|gb|EKM54464.1| hypothetical protein PHACADRAFT_258319 [Phanerochaete carnosa
HHB-10118-sp]
Length = 399
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 110/208 (52%), Gaps = 21/208 (10%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
+ V + L KD + F L +D A+AN+FRRI++A++PT+AI+ V I +NTSV+ DE ++
Sbjct: 6 DISVRIRDLKKDRVNFVLENVDMALANSFRRIMMADIPTVAIDIVEIDSNTSVLPDEFIS 65
Query: 135 HRLGLIPIIVD--PRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKW-- 188
HRLG+IP++ Y E + + +V +L++ CE G L V +N L++
Sbjct: 66 HRLGMIPLVSTNCDEAMRYTRECTCESFCQFCAVVLQLNIRCETAGEHLDVTSNHLEFVN 125
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
L N + P E S +P + P N+P P + IAR+G GQEI
Sbjct: 126 LSNNYDDPGEEI-----SKRPENFG--------YPVGKNDPNVP--PVLIARIGKGQEIR 170
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP + Y P
Sbjct: 171 ARCIAKKGIAKEHAKWSPCSAVAYEYDP 198
>gi|195031522|ref|XP_001988351.1| GH11119 [Drosophila grimshawi]
gi|195115860|ref|XP_002002474.1| GI12561 [Drosophila mojavensis]
gi|195397712|ref|XP_002057472.1| GJ18149 [Drosophila virilis]
gi|193904351|gb|EDW03218.1| GH11119 [Drosophila grimshawi]
gi|193913049|gb|EDW11916.1| GI12561 [Drosophila mojavensis]
gi|194141126|gb|EDW57545.1| GJ18149 [Drosophila virilis]
Length = 275
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 140/315 (44%), Gaps = 56/315 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCNEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRNQGEEDNE------YGESTD--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD------------------------------ 190
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + +P +++E + + F F +ES+GAL PE + V
Sbjct: 191 NSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESSGALKPENIVIMGV 250
Query: 368 KILEDKCERVITELS 382
++L++K + T+LS
Sbjct: 251 QVLKNKLSNLQTQLS 265
>gi|195338303|ref|XP_002035764.1| GM15286 [Drosophila sechellia]
gi|194129644|gb|EDW51687.1| GM15286 [Drosophila sechellia]
Length = 275
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 56/315 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRHQGEEDNE------YGESND--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD------------------------------ 190
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + +P +++E + + F F +ES GAL PE + V
Sbjct: 191 NSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESAGALKPENIVIMGV 250
Query: 368 KILEDKCERVITELS 382
++L++K + T+LS
Sbjct: 251 QVLKNKLSNLQTQLS 265
>gi|195579088|ref|XP_002079394.1| GD23930 [Drosophila simulans]
gi|194191403|gb|EDX04979.1| GD23930 [Drosophila simulans]
Length = 275
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 56/315 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDT----SNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
N LP+ ++ ++ + S D +I I +L GQE+
Sbjct: 122 -SSNAKVLPVTSRNQGEEDNE------YGESND--------------EILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P A + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPD------------------------------ 190
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + +P +++E + + F F +ES GAL PE + V
Sbjct: 191 NSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESAGALKPENIVIMGV 250
Query: 368 KILEDKCERVITELS 382
++L++K + T+LS
Sbjct: 251 QVLKNKLSNLQTQLS 265
>gi|308499659|ref|XP_003112015.1| CRE-RPB-3 protein [Caenorhabditis remanei]
gi|308268496|gb|EFP12449.1| CRE-RPB-3 protein [Caenorhabditis remanei]
Length = 297
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 144/319 (45%), Gaps = 42/319 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +EV L+ D M+F L D ++AN+ RR+ +AE+PT+AI+ V I NTSV+ DE
Sbjct: 3 YANQPNIEVTELSNDLMKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP + D + +Y E + + ++ +I F L + C + L V T +L+
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTRECECAEFCDECSIPFILQMKC-KDEATLAVTTADLR 121
Query: 188 WLPNGSELPLETKPDS----NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
+ N + + K + + +P + +F N +I I +L
Sbjct: 122 CMNNDTVIVCSKKVVTILACFQTVRPACGKALRERGTGREDFHNRE-----EILIVKLRK 176
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI 303
GQE+ L+A+A KG GK HAKW+P + P+ L +
Sbjct: 177 GQELNLKAYAKKGFGKEHAKWNPTCGVAFEYDPDNALRHTI------------------Y 218
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
++ + A P T E E + F F+IE TGAL + +
Sbjct: 219 PNVEEWPRSDHSALPEDST----------EKEAPFDQDGKPNKFFFSIEGTGALPVQRIV 268
Query: 364 TEAVKILEDKCERVITELS 382
T + IL+ K E + LS
Sbjct: 269 TMGIGILKKKLEELNMALS 287
>gi|154340820|ref|XP_001566363.1| DNA-directed RNA polymerase I-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063686|emb|CAM39871.1| DNA-directed RNA polymerase I-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 337
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 138/306 (45%), Gaps = 46/306 (15%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ + F L +D++ ANA RR+++AE+PT+AIE V I NTSV+ DE++AHRLGL+P+
Sbjct: 17 ETLTFQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLF-- 74
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
S + + F C G T LK ++ P+ +
Sbjct: 75 ------------SEKAKRLNFPQDCGCGGSGCPDCQITGSLK---------VQCPPNQHS 113
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
+ S ++ P + I + LG Q ++L K I KTHAK+
Sbjct: 114 KQVFIGDSLQIDSAEVYPVSAEEH-----GIWLVTLGRSQVLDLNVLIRKNIAKTHAKFM 168
Query: 266 PVATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFD-IEDIGSGKKRATVAQPRA 320
PVAT R EI+L + + +A + V CP NVF +E G + V A
Sbjct: 169 PVATVAMRYAAEILLNPNGFQALGKTNAREWVARCPRNVFRFVERTG----QVEVQDEGA 224
Query: 321 CTLCRECLRCGEEWEK----RVSIRRVKDH-----FIFTIESTGALSPETLFTEAVKILE 371
C CREC ++K V +R+ K F F +ESTG L + +AV +L
Sbjct: 225 CIFCRECTSQEPPFDKLPEPLVFVRQRKSKMGYFDFTFVVESTGVLPVLQIVYDAVAVLR 284
Query: 372 DKCERV 377
K +RV
Sbjct: 285 KKLQRV 290
>gi|162606468|ref|XP_001713264.1| DNA-directed RNA polymerase II [Guillardia theta]
gi|12580730|emb|CAC27048.1| DNA-directed RNA polymerase II [Guillardia theta]
Length = 299
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 26/180 (14%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV-DPRLFEYMSENDTS 158
AN+ RRI++ E+PT+AI+KV I NTS +DE +AHRLGLIPI + L +Y E D
Sbjct: 23 ANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRLGLIPIFSENADLIKYSRECDCE 82
Query: 159 N--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFS 216
N EK +I+F L V T+ ++ +K + + PL+T N S R Y ++
Sbjct: 83 NECEKCSILFTLDV--HANETEKTITSSMVKC--STACYPLKTFFIINNSGNSRNYDDYA 138
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
I IA+L PGQ I+L+A+ KGIGK H+KW+P+++ +R P
Sbjct: 139 -------------------IIIAKLNPGQNIKLKAYVKKGIGKEHSKWNPISSIKFRFYP 179
>gi|449018304|dbj|BAM81706.1| RNA polymerase II third large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 533
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 153/339 (45%), Gaps = 51/339 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ + RL + +F L D ++ANA RR +IA +PTM+I+ V I N S + DE +AHR
Sbjct: 29 KLRLTRLAATECDFTLSDTDISVANALRRAMIASVPTMSIDLVTIYVNDSPLHDEFVAHR 88
Query: 137 LGLIPIIVD-PRLFEYMSEND----------------TSNEKNTIVFKLHVLCERGG--P 177
LGL+P+ D F Y + D T+ EK ++ + L V C G
Sbjct: 89 LGLVPLRSDTAEYFNYNRDCDCTQSRIAALSGNPMEATNCEKCSVEYILDVTCPPDGELE 148
Query: 178 RLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT 237
+ V + L+ P + P + P +P +L P+ S + I
Sbjct: 149 EMNVTSRHLQMDPRYFDGPAYVRA-VVPIHRP------DQPWELAPDSSRDRTSADAGIV 201
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLV 293
I +L GQ + + A KG G+ HAKWSPVA A YRM P + L + V + ++L+
Sbjct: 202 ICKLRRGQRLYVRCIAKKGTGREHAKWSPVAAASYRMDPSVRLDLGRINAVLSSEQKRLI 261
Query: 294 KTCPVNVFDIE-DIGSGKKRATVAQPRACTLCR-----ECLR--------CGEEWEKRVS 339
+E ++ +G + + A R +CLR G+ + ++
Sbjct: 262 VKMGGGALRVEANVVTGD--VEIVEDEAYLRGRIEISNDCLRELQFALEEAGQNPFQLIT 319
Query: 340 IRRVKDH-----FIFTIESTGALSPETLFTEAVKILEDK 373
+ R D F FT+ESTG L PE + + ++L +K
Sbjct: 320 LSRGSDAEGQRTFYFTLESTGVLPPEAIVQSSFRVLIEK 358
>gi|326433417|gb|EGD78987.1| DNA-directed RNA polymerase II subunit RPB3 [Salpingoeca sp. ATCC
50818]
Length = 271
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 107/215 (49%), Gaps = 30/215 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F + +V ++ LT +++ L D A+AN+FRR +IAE+PT+AI+ V I NT+V+ DE
Sbjct: 4 FNRDPQVRIMSLTDSEIKLQLSNADTALANSFRRSMIAEVPTLAIDDVHIEINTTVLHDE 63
Query: 132 VLAHRLGLIPIIVD-PRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
+AHRLGLIP+ + F YM + D + +LHV C R ++ V T L+
Sbjct: 64 FIAHRLGLIPLTSERAAHFNYMRDCTCDAGCPNCVVKLELHVAC-RDAHQMEVTTEHLRS 122
Query: 189 L---PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
P+ S +P+ T + S + I I ++ GQ
Sbjct: 123 TLDGPDTSVVPVATAAERRDQSIQGNH-----------------------IVICKIRQGQ 159
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
E++L +A KG+GK HAKW P A Y P+ L
Sbjct: 160 ELKLTCYARKGVGKEHAKWIPTAAVAYEYDPDNAL 194
>gi|397779749|ref|YP_006544222.1| DNA-directed RNA polymerase subunit D [Methanoculleus bourgensis
MS2]
gi|396938251|emb|CCJ35506.1| DNA-directed RNA polymerase subunit D [Methanoculleus bourgensis
MS2]
Length = 276
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 134/294 (45%), Gaps = 47/294 (15%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL + +F + + + AN RR +++E+PT+AIE + I +NTSV+ DE+LAHRLGLIP
Sbjct: 7 RLDERVAKFTISSVSTSFANMLRRAMMSEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIP 66
Query: 142 IIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
+ D L Y++ + + E G+ P+ T
Sbjct: 67 LRTD--LDRYVTRAECTCE-------------------------------GAGCPVCTAT 93
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
+ P+T S DL+P+ + +I I L Q++ LEA+AV G GK H
Sbjct: 94 YTLSVEGPKTV----YSSDLIPQ-DPDAAPAEEEIPIIDLDKDQKVVLEAYAVIGTGKEH 148
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AKW Y+ P I + D + + V CP +V + G GK R + C
Sbjct: 149 AKWQATTACGYKNYPVITV--DEKCDGCGMCVDECPRDVL---EAGQGKVRVIGGRQEFC 203
Query: 322 TLC----RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
+LC R CL G E + I + +IF +ES G++ + A++ ++
Sbjct: 204 SLCRLCERACLAGGIGTEAAIHIGADETKYIFVVESDGSMPVREIIERALEYIQ 257
>gi|350539355|ref|NP_001232142.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
gi|197127827|gb|ACH44325.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
Length = 275
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 138/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ IVD + D + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI I +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + +I+D
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSEIDDE 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ +P + F + +ES G+L PET+ A
Sbjct: 215 DAQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|91094813|ref|XP_970635.1| PREDICTED: similar to DNA-directed RNA polymerase II subunit
[Tribolium castaneum]
gi|270006567|gb|EFA03015.1| hypothetical protein TcasGA2_TC010438 [Tribolium castaneum]
Length = 274
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 143/317 (45%), Gaps = 61/317 (19%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT D+++F + D ++AN+ RR+LIAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDP--RLFEYMSE---NDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
LAHR+GLIP+I D + +Y + D +E ++ F L V C R V T +L
Sbjct: 63 FLAHRIGLIPLISDDVVQRLQYPRDCICTDFCHE-CSVEFTLDVKCTDDHTR-HVTTADL 120
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ-DLLPEFSNNPIRPMLDITIARLGPGQ 245
K SS PR + S + D E+ + +I I +L GQ
Sbjct: 121 K------------------SSDPRVIPATSKHRDDESSEYGDTD-----EILIIKLRKGQ 157
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
E++++A+A KG GK HAKW+P A + P+
Sbjct: 158 ELKVKAYAKKGFGKEHAKWNPTAGVAFEYDPD---------------------------- 189
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
+ + +P +++E + + F F +E+ GAL PE +
Sbjct: 190 --NAMRHTLFPKPDEWPKSEYSELDEDQYEADFNWELKPNKFYFNVEAAGALKPENIVIM 247
Query: 366 AVKILEDKCERVITELS 382
V +L+DK + T+L+
Sbjct: 248 GVAMLKDKLSNLQTQLN 264
>gi|305662634|ref|YP_003858922.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
gi|304377203|gb|ADM27042.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
Length = 281
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 146/310 (47%), Gaps = 50/310 (16%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ V R + + +E + G+ + NA RR +A++PT A+++V++ NTS + DE+LAH
Sbjct: 1 MNINVRRWSNEIIEIAISGVPLPLLNALRRYALAKVPTYAVDEVMVVINTSHMFDEMLAH 60
Query: 136 RLGLIPIIVDPRL---------FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
R+ +IP+ + L Y +D+ ++ + V CE+ + L
Sbjct: 61 RIAMIPLRSEEALERIKGLDIDVCYKCGSDSEDKPPSDV------CEKCYVHMF-----L 109
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQ 245
+ + SE YT +SS EF ++P+ +I I L PGQ
Sbjct: 110 EAVAEDSE-----------------YTVYSSDIKSEDEF----VKPVYGNIPIVILSPGQ 148
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
I LE A G G H KWSP A R + +I + ED+ + +K ++ CP NV +
Sbjct: 149 RISLELRARVGRGIEHIKWSPATIAVTRYVADIRISEDLCNL-CKKCIEVCPKNVLTVY- 206
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
+ R V C LC++C+ VS R + +I IES+GAL PET+ E
Sbjct: 207 ----QNRIQVKDKYECILCKQCMYACPTKAIDVSYR--DNEYILVIESSGALEPETILRE 260
Query: 366 AVKILEDKCE 375
++ IL ++ E
Sbjct: 261 SIGILLNELE 270
>gi|86560996|ref|NP_492361.2| Protein RPB-3 [Caenorhabditis elegans]
gi|74834695|emb|CAB02268.2| Protein RPB-3 [Caenorhabditis elegans]
Length = 282
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 143/315 (45%), Gaps = 49/315 (15%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +EV LT D ++F L D ++AN+ RR+ +AE+PT+AI+ V I NTSV+ DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP I D + +Y + + + ++ +I F L + C + L V T L
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQMKC-KDEATLAVTTEHLM 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+ N L +P + + R S++D EF N +I I +L GQE+
Sbjct: 122 PMHN---LDTTVRPACGKALRER-----GSTRD---EFHNRE-----EILIVKLRKGQEL 165
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L+A+ KG GK HAKW+P + P+ L + ++
Sbjct: 166 NLKAYVKKGFGKEHAKWNPTCGVAFEYDPDNALRHTI------------------YPNVE 207
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + P T E E + F F+IE TGAL + + T +
Sbjct: 208 EWPRSDHSSLPEDST----------EKEAPFEPDNKPNKFWFSIEGTGALPAQRIVTMGI 257
Query: 368 KILEDKCERVITELS 382
IL+ K E + LS
Sbjct: 258 GILKRKLEELNMALS 272
>gi|196004242|ref|XP_002111988.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
gi|190585887|gb|EDV25955.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
Length = 274
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 134/301 (44%), Gaps = 57/301 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + LT ++++F L D ++AN+ RRI IA +PT+AI+ V NNTSV+ DE +AHR
Sbjct: 8 RVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDEFIAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LGLIP+ D + D + ++ ++ F L V C R V T +L +
Sbjct: 68 LGLIPLTCDEVIDRLQYSRDCNCVEHCPECSVEFTLDVRCNDDQTR-HVTTRDL-ISSDS 125
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+P+ T+ + T + +D DI IA+L GQEI+++A+
Sbjct: 126 RVVPVTTRYGEDD-------TVYGDQED--------------DILIAKLRRGQEIKIKAY 164
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A KG+G HAKW+P A+ + P+ + +
Sbjct: 165 AKKGLGTEHAKWNPTASVAFEYDPD------------------------------NAMRH 194
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
T +P + +E + V D F +E++G+L PE + + L++
Sbjct: 195 TTYPKPEEWPKSEYSNLPEDNYEASYDPQTVADKFYLNVETSGSLRPENIVLSGISTLKN 254
Query: 373 K 373
K
Sbjct: 255 K 255
>gi|344289201|ref|XP_003416333.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Loxodonta africana]
Length = 275
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 133/315 (42%), Gaps = 57/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +P EE + + F + +ES G+L PET+ A+
Sbjct: 193 ---RHTVYPKPEEWPKSEYSELDEEESQAPYDPNGKPERFYYNVESCGSLRPETIVLSAL 249
Query: 368 KILEDKCERVITELS 382
L+ K + T+LS
Sbjct: 250 SGLKKKLSDLQTQLS 264
>gi|58391045|ref|XP_318245.2| AGAP010321-PA [Anopheles gambiae str. PEST]
gi|55236782|gb|EAA13388.2| AGAP010321-PA [Anopheles gambiae str. PEST]
Length = 273
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 146/316 (46%), Gaps = 58/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + + ++AN+ RR+ IAE PT+AI+ V + +NT+V+ DE
Sbjct: 3 YANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSEN---DTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
LAHR+GLIP+I D + +Y + D NE ++ F L V C R V T +L
Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLDFCNE-CSVEFTLDVKCNEEHTR-HVTTADL 120
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
K SS PR S +D + N +I I +L GQE
Sbjct: 121 K------------------SSDPRVLPVTSRHRD---DEDNEYGEGTDEILIIKLRKGQE 159
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
++L+A+A KG GK HAKW+P TC V+ F+ D
Sbjct: 160 LKLKAYAKKGFGKEHAKWNP----------------------------TCGVS-FEY-DP 189
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ + +P +++E + + F F +ES+GAL PE +
Sbjct: 190 DNAMRHTLYPKPDEWPKSEHTELDDDKYEADYNWELKPNKFFFNVESSGALKPENIVLMG 249
Query: 367 VKILEDKCERVITELS 382
V++L++K + T+LS
Sbjct: 250 VQVLKNKLSNLQTQLS 265
>gi|449709854|gb|EMD49037.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica KU27]
Length = 283
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 127/289 (43%), Gaps = 50/289 (17%)
Query: 81 IRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
+ ++ + F + D ++ N RR+++AE PT+AI+ V + N+S + DE +AHRLGLI
Sbjct: 15 VECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDEFIAHRLGLI 74
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT-NELKWLPNGSELPLET 199
PI N ++T L + E +L V T N+L + + P+
Sbjct: 75 PI----------DSTQIHNFEDTDDAILELKEENNSNQLVVVTSNDLVSIGDKRVAPVNY 124
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
K D +P I I +LGP Q I + + KG GK
Sbjct: 125 KNDVDP------------------------------IVITQLGPRQNIHMVCYVKKGTGK 154
Query: 260 THAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
HAKW+P ++ L +I + ++ + E + CP VFD +++G ++ +
Sbjct: 155 FHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVG---EKVFI 211
Query: 316 AQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETL 362
C C EC + +R V++ D F+F +E TG P+ +
Sbjct: 212 RGEENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQI 260
>gi|323508505|dbj|BAJ77146.1| cgd1_2710 [Cryptosporidium parvum]
Length = 252
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 31/232 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E+ LT + + F L D ++AN RRI++AE+PT+AI+ V + +NTSV+ DE + HR
Sbjct: 11 KAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIVHR 70
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKN--TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+GLIP+ + R F + + N ++ + L V CE G R V +++ + +
Sbjct: 71 MGLIPLDSTNIRDFNFKDRCECQERCNKCSVEYLLDVTCEGGATR-NVTHYDIQPVATST 129
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+P+ P K D + +N I IA+LGPGQ I + A
Sbjct: 130 LVPM-------PVPK---------KDDSVDGMNNG-------ILIAKLGPGQRIAMRMTA 166
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEI----VLLEDVEDEDAEKLVKTCPVNVF 301
KGIGK HAKW PV+ A + ++ L ++ + +++V CP +VF
Sbjct: 167 CKGIGKFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVF 218
>gi|156097458|ref|XP_001614762.1| DNA-directed RNA polymerase II [Plasmodium vivax Sal-1]
gi|148803636|gb|EDL45035.1| DNA-directed RNA polymerase II, putative [Plasmodium vivax]
Length = 333
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 144/304 (47%), Gaps = 29/304 (9%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE+ +LTKD+M F L + +ANA RRI+++E+PT+AI+ V + NTS DE LAHRL
Sbjct: 14 VEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHRL 73
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIPI D++N KN F+ C+ + T++ N S++ +
Sbjct: 74 GLIPI-------------DSTNVKN-FEFREKCKCKETCSKCTIQYLIQVKCNNVSKIEI 119
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
+ +P + E NN + I I L Q + ++ A KGI
Sbjct: 120 THHDIESVEHEPNV------PMPVPLEDRNNQMAESNAIPIVTLSKNQTLHMKLIATKGI 173
Query: 258 GKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
GK HAKW P A YR+ ++ L+ + E L + N + +++ + +
Sbjct: 174 GKMHAKWIP-ANVSYRIDHKVAIKHHLINSLSREHKLLLANSLNKNCYVLKNAEAHDREV 232
Query: 314 T--VAQPRACTLCRECLRCGEEWEKRVSIRRVKDH--FIFTIESTGALSPETLFTEAVKI 369
+ + + + + C+ E + ++ + D F F +ES G++ PE + A++I
Sbjct: 233 SLRLNENMSVVMAESCIEFLNELGYKDVVKIIYDETKFHFKVESVGSMPPEQVVEMAIEI 292
Query: 370 LEDK 373
LE+K
Sbjct: 293 LENK 296
>gi|116754910|ref|YP_844028.1| RNA polymerase, insert [Methanosaeta thermophila PT]
gi|116666361|gb|ABK15388.1| DNA-directed RNA polymerase, subunit D [Methanosaeta thermophila
PT]
Length = 264
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 141/300 (47%), Gaps = 50/300 (16%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
VE+I L D + F L G+ A ANA RR IAE+P +AI+++ I NTSV+ DE +A
Sbjct: 1 MNVELIELRDDRVRFLLTGVTPAFANAIRRSCIAEVPKLAIDEISIYENTSVLFDEQIAL 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+PI D +S T +E C+ GG + G
Sbjct: 61 RLGLVPIRADD-----LSVYSTPDE-----------CQCGGIGCPGCRIDFMLTAEG--- 101
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
P T S+D+ +FS+ +R D I + LG G+++ +E A
Sbjct: 102 -------------PATV----HSRDI--KFSDPSVRAAFDNIPLVVLGEGEKLVIEGFAT 142
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
GK HAKW Y+ LP I E + + VK CP V +++ S K R
Sbjct: 143 LRTGKEHAKWQAGTLCGYKNLPSI---EISGCNNCGRCVKVCPRGVLVLDENDSIKVRDI 199
Query: 315 VAQPRACTLCRECLRCGEEWEKR-VSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
C+LCR C+ EE ++R +S+ ++D FI +IES G+++ + L A + L+ K
Sbjct: 200 T----ECSLCRLCV---EECDQRAISVVPLEDAFIMSIESDGSINAKDLVRMAAEELKKK 252
>gi|124507008|ref|XP_001352101.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|23505130|emb|CAD51912.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 335
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 150/315 (47%), Gaps = 40/315 (12%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N ++ + +LTKD++ F L ++ IANA RRI+++E+PT+AI+ V + NTS DE +
Sbjct: 9 NKHQINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFI 68
Query: 134 AHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
AHRLGLIPI V+ F + + K TI + + V C ++ V +++ L
Sbjct: 69 AHRLGLIPIDSRNVNNYEFREKCKCKETCSKCTIQYIIEVKCNHSN-KIDVSHYDIESLE 127
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+ +P+ P N + S S++ +P I L Q + ++
Sbjct: 128 HEPNVPMPI-PHGNKN---------SVSENAIP--------------IVTLSKNQTLHMK 163
Query: 251 AHAVKGIGKTHAKWSPVATAW---YRMLPEIVLLEDVEDED----AEKLVKTCPVNVFDI 303
A KGIGK HAKW P ++ +++L + L++ + +E A L K C + D
Sbjct: 164 LIATKGIGKMHAKWIPANVSYRIDHKVLIKHNLIDKLSNEHKLLLANNLNKDCYILNKDT 223
Query: 304 EDIGSGKK---RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH--FIFTIESTGALS 358
D + + + + + + + E + I+ V D F F +ES G++
Sbjct: 224 HDDDNNNNNNIQLKLKENMSVVMAESSIDLLSELGYKDIIKIVYDETMFHFHVESVGSIP 283
Query: 359 PETLFTEAVKILEDK 373
PE + A+ ILE+K
Sbjct: 284 PEQIVQMAIDILENK 298
>gi|312378871|gb|EFR25321.1| hypothetical protein AND_09454 [Anopheles darlingi]
Length = 273
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 145/320 (45%), Gaps = 66/320 (20%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + + ++AN+ RR+ IAE PT+AI+ V + +NT+V+ DE
Sbjct: 3 YANQPSVTISELTDENVKFVVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSE-------NDTSNEKNTIVFKLHVLCERGGPRLTVK 182
LAHR+GLIP+I D + +Y + ND S E F L V C R V
Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLDFCNDCSVE-----FTLDVKCNEEHTR-HVT 116
Query: 183 TNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLG 242
T +LK SS PR S +D + N +I I +L
Sbjct: 117 TADLK------------------SSDPRVLPVTSRHRD---DEDNEYGEGTDEILIIKLR 155
Query: 243 PGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFD 302
GQE++L+A+A KG GK HAKW+P TC V+ F+
Sbjct: 156 KGQELKLKAYAKKGFGKEHAKWNP----------------------------TCGVS-FE 186
Query: 303 IEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETL 362
D + + +P +++E + + F F +ES+GAL PE +
Sbjct: 187 Y-DPDNAMRHTLYPKPDEWPKSEHTELDDDKYEADYNWELKPNKFFFNVESSGALKPENI 245
Query: 363 FTEAVKILEDKCERVITELS 382
V++L++K + T+LS
Sbjct: 246 VLMGVQVLKNKLSNLQTQLS 265
>gi|167386476|ref|XP_001737769.1| DNA-directed RNA polymerase subunit D [Entamoeba dispar SAW760]
gi|165899221|gb|EDR25860.1| DNA-directed RNA polymerase subunit D, putative [Entamoeba dispar
SAW760]
Length = 283
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 127/289 (43%), Gaps = 50/289 (17%)
Query: 81 IRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
+ ++ + F + D ++ N RR+++AE PT+AI+ V + N+S + DE +AHRLGLI
Sbjct: 15 VECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDEFIAHRLGLI 74
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT-NELKWLPNGSELPLET 199
PI N ++T L + E +L V T N+L + + P+
Sbjct: 75 PI----------DSTQIHNFEDTDDAILELKKENNSNQLVVVTSNDLVSIGDKRVAPVNY 124
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+ D +P I I +LGP Q I + + KG GK
Sbjct: 125 RNDVDP------------------------------IVITQLGPRQNIHMVCYVKKGTGK 154
Query: 260 THAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
HAKW+P ++ L +I + ++ + E + CP VFD +++G ++ +
Sbjct: 155 FHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVG---EKVFI 211
Query: 316 AQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETL 362
C C EC + +R V++ D F+F +E TG P+ +
Sbjct: 212 RGDENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQI 260
>gi|160331749|ref|XP_001712581.1| rpb3 [Hemiselmis andersenii]
gi|159766030|gb|ABW98256.1| rpb3 [Hemiselmis andersenii]
Length = 307
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 151/316 (47%), Gaps = 38/316 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ L+ + + L + +I N+ RR++I E+PT AI+ + I N+SV+ DE L+HRL
Sbjct: 6 LEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSHRL 65
Query: 138 GLIPIIVD-PRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GL+P+ + F Y E D K + F L + E+ P+ ++ + +L +
Sbjct: 66 GLLPLFSNFAHEFRYTRECDCEQYCSKCSFKFSLDIYAEK-FPQ-SIFSTDLNTIDKKEN 123
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+ P Y+S + D P I I +LG GQ I+L A A
Sbjct: 124 FFYQ-------QINPIHYSSLKETLDQKP------------ILIGKLGIGQRIKLVAIAK 164
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIV-----LLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
KGIGK HAKWSP++ + +P + + + + + EK+ + P N+F E +
Sbjct: 165 KGIGKEHAKWSPISVIKIKKIPFFLFDLKEINKKINSKTKEKISQILP-NLFIFEKSKNN 223
Query: 310 KKRATV--------AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
K + +Q TL + L+ G + + + + F IESTGAL+P
Sbjct: 224 LKYNQIFLSKEENFSQFDLLTLSKIFLKKGIDMQFIKNRKNENSDFEIYIESTGALNPIE 283
Query: 362 LFTEAVKILEDKCERV 377
+F ++++I++ K +
Sbjct: 284 IFRKSIQIIKKKLNLI 299
>gi|269784633|ref|NP_001161428.1| DNA-directed RNA polymerase II subunit RPB3 [Danio rerio]
gi|28278474|gb|AAH46047.1| Polymerase (RNA) II (DNA directed) polypeptide C [Danio rerio]
Length = 275
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ L+ ++++F + D A+AN+ RR+ ++E+PT+AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ IVD + D + ++ L V C R + L
Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + + P + + +IE+
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV-----YPIPQEWPKSEYSEIEED 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
G + +P + F + +ES G+L PET+ A
Sbjct: 215 GVQAQYDPNGKP--------------------------ERFYYNVESCGSLRPETIVMSA 248
Query: 367 VKILEDKCERVITELS 382
+ +L+ K + T+LS
Sbjct: 249 LAMLKKKLSDLQTQLS 264
>gi|427787879|gb|JAA59391.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 274
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 137/328 (41%), Gaps = 84/328 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + + ++ F L V C R V T +LK
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVKCLDEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS PR S +D E+ DI I +L GQE+
Sbjct: 122 ------------------SSDPRVVPVTSRHKDDTNEYGETE-----DILIVKLRKGQEV 158
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+ A+A KG GK HAKW+P + P+ N F
Sbjct: 159 KARAYAKKGFGKEHAKWNPTCGVAFEYDPD---------------------NAF------ 191
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH-------------FIFTIEST 354
+ T +P EEW K +DH F + +ES+
Sbjct: 192 ---RHTTYPRP-------------EEWPKSEYTELDEDHAEAEFQSEGKPNKFYYNVESS 235
Query: 355 GALSPETLFTEAVKILEDKCERVITELS 382
GAL PE + + +L+ K + T+LS
Sbjct: 236 GALKPENIVLSGLSVLKKKLSDLQTQLS 263
>gi|330506856|ref|YP_004383284.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
gi|328927664|gb|AEB67466.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
Length = 264
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 50/294 (17%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
NF E++ L +D + + L G+ AA AN RR ++E+P +AI+++ + +NTSV+ DE +
Sbjct: 2 NF--ELLELREDRIRYLLSGVSAAFANGIRRACMSEVPILAIDEINLYDNTSVLFDEQIG 59
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
R+G +P++ D E+ ++ + + GP +
Sbjct: 60 LRIGEVPLVADELDLFSQPEDCQCGGTGCPGCRVDFMLSKEGPGMVY------------- 106
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHA 253
S+D+ +F++ +RP D I + LG G+++ +E +A
Sbjct: 107 -----------------------SEDI--QFTDPGVRPAFDKIPLVILGEGEKLVMEGYA 141
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
K +GK H+KW Y+ LP I + E + K V+ CP ++ IE+ G+ +A
Sbjct: 142 TKRVGKEHSKWQAGTLCGYKNLPSITVSEAC--DGCGKCVEACPRDILVIEE---GRAKA 196
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
T C+LC+ C+ G + ++ + D F+ +IE +G+++ + L AV
Sbjct: 197 T--NILECSLCKLCV--GACEAAAIDLKPIHDSFVVSIEGSGSVAAKDLVARAV 246
>gi|346471307|gb|AEO35498.1| hypothetical protein [Amblyomma maculatum]
Length = 274
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 140/328 (42%), Gaps = 84/328 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSIRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + + ++ F L V C R V T +LK
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVKCLDEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS PR S +D E+ DI I +L GQE+
Sbjct: 122 ------------------SSDPRVVPVTSRHKDDTNEYGETE-----DILIVKLRKGQEV 158
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+ A+A KG GK HAKW+P + P+ N F
Sbjct: 159 KARAYAKKGFGKEHAKWNPTCGVAFEYDPD---------------------NAF------ 191
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEK----RVSIRRVK---------DHFIFTIEST 354
+ T +P EEW K + RV+ + F F +ES+
Sbjct: 192 ---RHTTYPRP-------------EEWHKSEYSEIEDDRVEADFLSEGKPNKFYFNVESS 235
Query: 355 GALSPETLFTEAVKILEDKCERVITELS 382
GAL PET+ + +L+ K + T+LS
Sbjct: 236 GALKPETIVLTGLSVLKKKLSDLQTQLS 263
>gi|385805508|ref|YP_005841906.1| RNA polymerase, insert [Fervidicoccus fontis Kam940]
gi|383795371|gb|AFH42454.1| RNA polymerase, insert [Fervidicoccus fontis Kam940]
Length = 281
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 148/315 (46%), Gaps = 62/315 (19%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+++ I + ++ +E + + + RRI+I E+PTMA++ VLI N SV+ DEVLAH
Sbjct: 1 MKIKPINIKENFLELYIEDAPQEVLTSLRRIIIEEVPTMAVDNVLILENNSVLHDEVLAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLG+IP+ D L +Y + + + N CE L L
Sbjct: 61 RLGMIPLYSDRALEKYRAPEECAECTN---------CENCFDIL--------------HL 97
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQ--DLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+E K + K YT S+ D+ P F DI I LG GQ+I LEA A
Sbjct: 98 EVENKDE----DKKVVYTGELKSEDPDIYPVFK--------DIPIVVLGKGQKIVLEAEA 145
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIE------DI 306
G GK H KWSPV+ + +PEI+ E E++++ + +K + F E ++
Sbjct: 146 RLGRGKEHIKWSPVSISALISVPEIIFSFEQCEEQESNECLKC--IGEFSEELAEKMMEM 203
Query: 307 GSGK----KRATVAQPRAC--TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
GK + R C +CR+C++ I +++ I +ESTG+LS +
Sbjct: 204 KKGKIELENFKNTSLLRFCEDKVCRKCMK----------INYLENKKILRVESTGSLSTK 253
Query: 361 TLFTEAVKILEDKCE 375
+ +A++IL K E
Sbjct: 254 LIIEKALEILNKKAE 268
>gi|157119713|ref|XP_001659470.1| DNA-directed RNA polymerase II subunit [Aedes aegypti]
gi|108875224|gb|EAT39449.1| AAEL008755-PA [Aedes aegypti]
Length = 275
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 137/315 (43%), Gaps = 56/315 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++ N+ RR+ IAE PT+AI+ V + +NT+V+ DE
Sbjct: 3 YANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + D + + ++ F L V C R V T +LK
Sbjct: 63 FLAHRVGLIPLISDEVVERMQYSRDCTCLDFCTECSVEFTLDVKCNDEHTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS PR S +D + N +I I +L GQE+
Sbjct: 122 ------------------SSDPRVLPVTSRHRD---DEDNEYGEGTDEILIIKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P + P+
Sbjct: 161 KLRAYAKKGFGKEHAKWNPTCGVCFEYDPD------------------------------ 190
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + +P +++E + + F F +ES+GAL PE + V
Sbjct: 191 NSMRHTLFPKPDEWPKSEHTELEDDKYEADFNWEAKPNKFFFNVESSGALKPENIVMMGV 250
Query: 368 KILEDKCERVITELS 382
++L++K + T+LS
Sbjct: 251 QVLKNKLSNLQTQLS 265
>gi|517290|emb|CAA56480.1| RNA polymerase subunit D [Sulfolobus acidocaldarius]
Length = 264
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 128/284 (45%), Gaps = 50/284 (17%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN 159
N+ RR I +P MA+++V N S + DE+LAHRL L+P + D L Y + +
Sbjct: 25 VNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEALEHYRPPEECAE 84
Query: 160 EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
K C+ R+ L +E K S S+
Sbjct: 85 CKEN--------CDGCYNRVY--------------LDVEAKDQS----------LMIYSR 112
Query: 220 DLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
DL E + I P+ I I LG Q+I LEA G GK H K+SPV+ + R P++
Sbjct: 113 DLKSE--DQMITPVSGAIPIVLLGSKQKISLEARLRLGYGKEHIKYSPVSVSIVRYYPKV 170
Query: 279 VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR-CGEEWEKR 337
+L + EK V+ CP VF +E+ + V +C LC ECL+ C
Sbjct: 171 TVL-----GNCEKAVEVCPEGVFAMEN-----NKLVVKNELSCILCEECLKYCA----GS 216
Query: 338 VSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
VSI V++ FI IES G+L PE + EA K L K + ++L
Sbjct: 217 VSIESVENKFILEIESVGSLKPERILIEASKSLLRKLSELKSKL 260
>gi|14702171|ref|NP_116558.1| DNA-directed RNA polymerase II subunit RPB3 [Homo sapiens]
gi|384475805|ref|NP_001245048.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|114662810|ref|XP_001148305.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Pan troglodytes]
gi|296231192|ref|XP_002761051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Callithrix
jacchus]
gi|297698834|ref|XP_002826511.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pongo
abelii]
gi|397506549|ref|XP_003823789.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pan
paniscus]
gi|402908526|ref|XP_003916990.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Papio
anubis]
gi|403306002|ref|XP_003943535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Saimiri
boliviensis boliviensis]
gi|426382315|ref|XP_004057753.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gorilla
gorilla gorilla]
gi|3915850|sp|P19387.2|RPB3_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|2266931|gb|AAC14355.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|3252823|gb|AAC24309.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|12653281|gb|AAH00409.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|13111973|gb|AAH03159.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|20380436|gb|AAH28157.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|49457035|emb|CAG46838.1| POLR2C [Homo sapiens]
gi|60823189|gb|AAX36635.1| polymerase II polypeptide C [synthetic construct]
gi|90079489|dbj|BAE89424.1| unnamed protein product [Macaca fascicularis]
gi|119603332|gb|EAW82926.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603333|gb|EAW82927.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603335|gb|EAW82929.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603336|gb|EAW82930.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|123981016|gb|ABM82337.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|123995821|gb|ABM85512.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|157928942|gb|ABW03756.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|158259685|dbj|BAF85801.1| unnamed protein product [Homo sapiens]
gi|208967078|dbj|BAG73553.1| polymerase (RNA) II (DNA directed) polypeptide C [synthetic
construct]
gi|355710235|gb|EHH31699.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|355756811|gb|EHH60419.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca fascicularis]
gi|383419311|gb|AFH32869.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|384947770|gb|AFI37490.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|410206970|gb|JAA00704.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410264222|gb|JAA20077.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410307460|gb|JAA32330.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410331907|gb|JAA34900.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
Length = 275
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 140/316 (44%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + ++++
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSELDED 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
S +P + F + +ES G+L PET+ A
Sbjct: 215 ESQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|407039476|gb|EKE39676.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 283
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 127/289 (43%), Gaps = 50/289 (17%)
Query: 81 IRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
+ ++ + F + D ++ N RR+++AE PT+AI+ V + N+S + DE +AHRLGLI
Sbjct: 15 VECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDEFIAHRLGLI 74
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT-NELKWLPNGSELPLET 199
PI N ++T L + E +L V T N+L + + P+
Sbjct: 75 PI----------DSTQIHNFEDTDDAILELKEENNSNQLVVVTSNDLVSIGDKRVAPVNY 124
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+ D +P I I +LGP Q I + + KG GK
Sbjct: 125 RNDVDP------------------------------IVITQLGPRQNIHMVCYVKKGTGK 154
Query: 260 THAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
HAKW+P ++ L +I + ++ + E + CP VFD +++G ++ +
Sbjct: 155 FHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVG---EKVFI 211
Query: 316 AQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETL 362
C C EC + +R V++ D F+F +E TG P+ +
Sbjct: 212 RGEENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQI 260
>gi|50753469|ref|XP_414001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gallus
gallus]
Length = 275
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 139/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ IVD + D + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI I +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
+L A+A KG GK HAKW+P A + P+ L V + E P + + +I++
Sbjct: 160 KLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSEIDEE 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ +P + F + +ES G+L PET+ A
Sbjct: 215 DAQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|88604132|ref|YP_504310.1| DNA-directed RNA polymerase subunit D [Methanospirillum hungatei
JF-1]
gi|88189594|gb|ABD42591.1| DNA-directed RNA polymerase, subunit D [Methanospirillum hungatei
JF-1]
Length = 272
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 132/309 (42%), Gaps = 43/309 (13%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++E L ++ F L A ANA RR +++E+ T AIE V I +NTS + DE+L H
Sbjct: 1 MKIEFSSLEENAASFVLSDAPIAFANALRRAMVSEVMTFAIEDVKIYDNTSALFDEILTH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP++ DP F S+ + G PR TV L E
Sbjct: 61 RLGLIPLVTDPDSFVPRSQCSCNGA--------------GCPRCTVT------LTMSVEG 100
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
P S DL+ + + +RP D I I +L Q++ +EA A
Sbjct: 101 P-----------------GVVMSGDLISQ--DAVVRPAEDNIPIVKLEKNQKVVIEAQAY 141
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G HAKWSP Y+ P ++ D + V+ CP + +++ G K
Sbjct: 142 MERGMEHAKWSPTTVCGYKNYP--IITHDERCDGCGLCVEVCPKEILEVKGSAVGVKDGG 199
Query: 315 VAQPRACTLCRE-CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ C LC + CL G E + I F+FT+ES G+L + + L+ +
Sbjct: 200 LESCSLCRLCEQACLNSGIGDEPAIHIGMDDRRFLFTVESAGSLPTVRIIKHGLLFLKKQ 259
Query: 374 CERVITELS 382
+ + LS
Sbjct: 260 SDELHEALS 268
>gi|341882009|gb|EGT37944.1| hypothetical protein CAEBREN_16087 [Caenorhabditis brenneri]
gi|341882040|gb|EGT37975.1| hypothetical protein CAEBREN_14407 [Caenorhabditis brenneri]
Length = 281
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 22/213 (10%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N VEV L+ D ++F L D ++AN+ RR+ +AE+PT+AI+ V I NTSV+ DE
Sbjct: 3 YANQPNVEVTELSNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP I D + +Y E + + ++ +I F L + C + L V T L
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRECECAEFCDECSIPFILQMKC-KDEATLAVTTEHL- 120
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+PL+ + + +P + EF N +I I +L GQE+
Sbjct: 121 -------IPLK----DDTTVRPACGKALRERGSAREEFHNRE-----EILIVKLRKGQEL 164
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
L+A+A KG GK HAKW+P + P+ L
Sbjct: 165 NLKAYAKKGFGKEHAKWNPTTGVAFEYDPDNAL 197
>gi|67471071|ref|XP_651491.1| DNA-directed RNA polymerase II subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56468232|gb|EAL46103.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 283
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 127/289 (43%), Gaps = 50/289 (17%)
Query: 81 IRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
+ ++ + F + D ++ N RR+++AE PT+AI+ V + N+S + DE +AHRLGLI
Sbjct: 15 VECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDEFIAHRLGLI 74
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT-NELKWLPNGSELPLET 199
PI N ++T L + E +L V T N+L + + P+
Sbjct: 75 PI----------DSTQIHNFEDTDDAILELKEENNSNQLVVVTSNDLVSIGDKRVAPVNY 124
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
K D +P I I +LGP Q I + + KG GK
Sbjct: 125 KNDVDP------------------------------IVITQLGPRQNIHMVCYVKKGTGK 154
Query: 260 THAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
HAKW+P ++ L +I + ++ + E + CP +FD +++G ++ +
Sbjct: 155 FHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKLFDYQEVG---EKVFI 211
Query: 316 AQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETL 362
C C EC + +R V++ D F+F +E TG P+ +
Sbjct: 212 RGEENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQI 260
>gi|389583068|dbj|GAB65804.1| DNA-directed RNA polymerase II [Plasmodium cynomolgi strain B]
Length = 334
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 31/305 (10%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE+ +LTKD+M F L + +ANA RRI+++E+PT+AI+ V + NTS DE LAHRL
Sbjct: 15 VEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHRL 74
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIPI D+ N KN F+ C+ + T++ N S++ +
Sbjct: 75 GLIPI-------------DSRNVKN-FEFREKCKCKETCSKCTIQYLIQVKCNNVSKIDI 120
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLP-EFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+ +P +P E NN + I I L Q + ++ A KG
Sbjct: 121 THYDIESVEHEPNVPMP-------VPFEDRNNKMAESNAIPIVTLSKNQTLHMKLIATKG 173
Query: 257 IGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
IGK HAKW P A YR+ ++ L+ + E L + N + +++ + +
Sbjct: 174 IGKMHAKWIP-ANVSYRIDHKVAIKHQLINSLSVEHKLLLANSLNKNCYVLKNADAHDRD 232
Query: 313 ATVA--QPRACTLCRECLRCGEEWEKRVSIRRVKDH--FIFTIESTGALSPETLFTEAVK 368
++ + + + C+ E + ++ + D F F +ES G++ PE + A++
Sbjct: 233 VSLKLNENMSVVMAESCIELLNELGYKDVVKIIYDETKFHFKVESVGSMPPEQVVEMAIE 292
Query: 369 ILEDK 373
ILE+K
Sbjct: 293 ILENK 297
>gi|337497|gb|AAA36586.1| RNA polymerase subunit hRPB 33 [Homo sapiens]
gi|2920709|emb|CAA11842.1| RNA polymerase II subunit [Homo sapiens]
gi|2920711|emb|CAA11843.1| RNA polymerase subunit [Homo sapiens]
Length = 275
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 135/316 (42%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVA-QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
R TV +P +E + + F + +ES G+L PET+ A
Sbjct: 193 ----RTTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|391329125|ref|XP_003739027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Metaseiulus occidentalis]
Length = 277
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 142/315 (45%), Gaps = 58/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N RV + L+ ++++F L D ++AN+ RR++IAE PTMAI+ V + N+SV+ DE
Sbjct: 3 YANQPRVTITDLSNENVKFVLEDTDLSVANSIRRVMIAETPTMAIDWVQLEANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNEL 186
+AHRLGLIP+ + + E+M N + ++ F L V C R V T +L
Sbjct: 63 FIAHRLGLIPLTSE-EIVEHMQYNRDCSCVDFCTDCSVEFILDVKCTDDATR-HVTTADL 120
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
K S+ R S +D E+ DI I +L GQE
Sbjct: 121 K------------------SADIRCVPVTSKRRDDTAEYGQEE-----DILIVKLRKGQE 157
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
++ +A KG GK HAKW+P + P+ K T + I +
Sbjct: 158 VKAICYARKGFGKEHAKWNPTCGVAFEYDPD------------NKFRHT----TYPIPEE 201
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ + +A+ E R E++ + F F +ES+GAL PET+
Sbjct: 202 WPRSEYSEIAE--------EDTRSQAEYDPEGKPSK----FFFNVESSGALKPETIVMSG 249
Query: 367 VKILEDKCERVITEL 381
VK L+ K ++T+L
Sbjct: 250 VKQLKKKLSDLLTQL 264
>gi|395506007|ref|XP_003757327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Sarcophilus harrisii]
Length = 275
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 140/316 (44%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI I +L GQE+
Sbjct: 122 ------------------SNTPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KGIGK HAKW+P A + P+ L V + E P + + +I++
Sbjct: 160 RLRAYAKKGIGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSEIDED 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ +P + F + +ES G+L PET+ A
Sbjct: 215 EAQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+L+
Sbjct: 249 LSGLKKKLSDLQTQLT 264
>gi|12837765|dbj|BAB23943.1| unnamed protein product [Mus musculus]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 134/315 (42%), Gaps = 57/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +P +E + + + F + +ES G+L PET+ A+
Sbjct: 193 ---RHTVYPKPEEWPKSEYSELDEDESQAPYDPKGKPERFYYNVESCGSLRPETIVLSAL 249
Query: 368 KILEDKCERVITELS 382
L+ K + T+LS
Sbjct: 250 SGLKKKLSDLQTQLS 264
>gi|222445013|ref|ZP_03607528.1| hypothetical protein METSMIALI_00629 [Methanobrevibacter smithii
DSM 2375]
gi|222434578|gb|EEE41743.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2375]
Length = 274
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 141/314 (44%), Gaps = 59/314 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+EV T D++ F + + NA RR + +P +AIE V I N S + +EVLAH
Sbjct: 1 MEIEVKSQTDDEIVFIVRDAEVPFINAIRRCAMVNVPKIAIEDVNIMRNDSAMFNEVLAH 60
Query: 136 RLGLIPIIVDPRLFEYMS--ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
RLGL P++ + E + +D E N+++F L + GP++
Sbjct: 61 RLGLTPLVSNMDAIEGLPLPGDDDYEENNSVMFSL----KEEGPKVVY------------ 104
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAH 252
S+DL+ S++ I+P+ D I + +L G+++ +EA
Sbjct: 105 ------------------------SKDLIS--SDSKIKPVYDTIPLVKLKEGEKLNIEAV 138
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A G GK HAKW P Y+ PEI EDV + + CP V + K
Sbjct: 139 AKVGYGKEHAKWMPTTVCVYKQYPEITFNEDVGID--YECADACPRGVLKSD---KRSKE 193
Query: 313 ATVAQPRACTLCRECLRC--------GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
+ C +C+ C+R G++ E +++ ++ FIF IE+ G++ P+ +
Sbjct: 194 IKILDIENCAMCKSCVRASIRNAQSEGKD-ESYINVGYHENDFIFRIETDGSMPPKEVLL 252
Query: 365 EAVKILEDKCERVI 378
+A L +K ++ I
Sbjct: 253 QACDELGEKADKFI 266
>gi|291390190|ref|XP_002711589.1| PREDICTED: DNA directed RNA polymerase II polypeptide C
[Oryctolagus cuniculus]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 140/316 (44%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQNSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + ++++
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSELDED 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
S +P + F + +ES G+L PET+ A
Sbjct: 215 ESQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|124486064|ref|YP_001030680.1| DNA-directed RNA polymerase subunit D [Methanocorpusculum labreanum
Z]
gi|124363605|gb|ABN07413.1| DNA-directed RNA polymerase, subunit D [Methanocorpusculum
labreanum Z]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 140/308 (45%), Gaps = 51/308 (16%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL F + G A ANA RR +I E+PT+AIE + I +NTSV+ DE+LAHRLGLIP
Sbjct: 7 RLDDSVARFTIHGATPAFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIP 66
Query: 142 IIVDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
I D + SE E T++F L V GP++ V + +L
Sbjct: 67 IKTDLSQYVPRSECSCGGEGCPHCTVMFTLSV----EGPKM-VTSGDL------------ 109
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
S ++++P +N P I +L Q++ LEA A G
Sbjct: 110 ----------------ISMDENVVPVHNNIP--------IVKLWENQKVVLEAVAEVNYG 145
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI-EDIGSGKKRATVAQ 317
K HAKW P Y P ++ ++D D K V CP +V ++ +D S + ++
Sbjct: 146 KEHAKWQPTLACGYSEYP-VITIKDTCD-GCGKCVAECPRDVLELTKDTVSIRVVNGESK 203
Query: 318 PRACTLCR----ECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ C+LCR C+ G + + I FIF +ES G+L + + A+ ++ +
Sbjct: 204 EKDCSLCRLCETACMDSGIGEDPAIIISADSTKFIFVVESDGSLPVKEIIERALLHIKSR 263
Query: 374 CERVITEL 381
+I L
Sbjct: 264 SSDLIEAL 271
>gi|427778091|gb|JAA54497.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 268
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 133/324 (41%), Gaps = 82/324 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+AHRLGLIP+ D + + D + + L E+ V T +LK
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADXXXTLDVKCLDEQTR---HVTTADLK---- 115
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS PR S +D E+ DI I +L GQE++ A
Sbjct: 116 --------------SSDPRVVPVTSRHKDDTNEYGETE-----DILIVKLRKGQEVKARA 156
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
+A KG GK HAKW+P + P+ N F +
Sbjct: 157 YAKKGFGKEHAKWNPTCGVAFEYDPD---------------------NAF---------R 186
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH-------------FIFTIESTGALS 358
T +P EEW K +DH F + +ES+GAL
Sbjct: 187 HTTYPRP-------------EEWPKSEYTELDEDHAEAEFQSEGKPNKFYYNVESSGALK 233
Query: 359 PETLFTEAVKILEDKCERVITELS 382
PE + + +L+ K + T+LS
Sbjct: 234 PENIVLSGLSVLKKKLSDLQTQLS 257
>gi|148643488|ref|YP_001274001.1| DNA-directed RNA polymerase subunit D [Methanobrevibacter smithii
ATCC 35061]
gi|261350417|ref|ZP_05975834.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
gi|166229318|sp|A5UN55.1|RPOD_METS3 RecName: Full=DNA-directed RNA polymerase subunit D
gi|148552505|gb|ABQ87633.1| DNA-directed RNA polymerase, subunit D, RpoD [Methanobrevibacter
smithii ATCC 35061]
gi|288861200|gb|EFC93498.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
Length = 274
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 141/314 (44%), Gaps = 59/314 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+EV T D++ F + + NA RR + +P +AIE V I N S + +EVLAH
Sbjct: 1 MEIEVKSQTDDEIVFIVRDAEVPFINAIRRCAMVNVPKIAIEDVNIMRNDSAMFNEVLAH 60
Query: 136 RLGLIPIIVDPRLFEYMS--ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
RLGL P++ + E + +D E N+++F L + GP++
Sbjct: 61 RLGLTPLVSNMDAIEGLPLPGDDDYEENNSVMFSL----KEEGPKVVY------------ 104
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAH 252
S+DL+ S++ I+P+ D I + +L G+++ +EA
Sbjct: 105 ------------------------SKDLIS--SDSKIKPVYDTIPLVKLKEGEKLNIEAV 138
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A G GK HAKW P Y+ PEI EDV + + CP V + K
Sbjct: 139 AKVGYGKEHAKWMPTTVCVYKQYPEITFNEDVGID--YECADACPRGVLKSD---KRSKE 193
Query: 313 ATVAQPRACTLCRECLRC--------GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
+ C +C+ C+R G++ E +++ ++ FIF IE+ G++ P+ +
Sbjct: 194 IKILDIEDCAMCKSCVRASIRNAQSEGKD-ESYINVGYHENDFIFRIETDGSMPPKEVLL 252
Query: 365 EAVKILEDKCERVI 378
+A L +K ++ I
Sbjct: 253 QACDELGEKADKFI 266
>gi|348503818|ref|XP_003439459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oreochromis niloticus]
Length = 275
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 141/316 (44%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D A+AN+ RR+ ++E+PT+AI+ + I N+SV+ DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSLRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ D + + D + E + ++ L V C R + L
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTCEDFCQECSVELTLDVRCNEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V E P + + +IE+
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNALRHTVYPRPEE-----WPKSEYSEIEE- 213
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+E++ + F + +ES G+L PET+ A
Sbjct: 214 -------------------------DEFQAPYDPNGKPERFYYNVESCGSLRPETIVMSA 248
Query: 367 VKILEDKCERVITELS 382
+ +L+ K + T+LS
Sbjct: 249 LAVLKKKLSDLQTQLS 264
>gi|159115523|ref|XP_001707984.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
gi|21842208|gb|AAM77734.1|AF510642_1 RNA polymerase II subunit Rpb3 [Giardia intestinalis]
gi|157436093|gb|EDO80310.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
Length = 326
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 152/323 (47%), Gaps = 43/323 (13%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N ++++ T +E ++ G+D + N RR + A++PT+AI+ V +N++ + +E +A
Sbjct: 2 NPSIKILSKTDLKLELEISGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIA 61
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
HRLGLIP+ L +S T +E+++ + +G ++ + +++ + +
Sbjct: 62 HRLGLIPLRTAGSL-SAISYWYTCDEEHSTEIECRECTFKGTLNISNDSTKIRVVTDK-- 118
Query: 195 LPLETKPDSNPSSKPRTY--TSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ K D S Y +SF +++ P P+L +L PG+ I +
Sbjct: 119 ---DIKFDHGGISTLSNYLESSFGAAE--------TPSIPIL-----KLAPGESINALLY 162
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE-------DEDAEKLVKTCPVNVFDIED 305
A K GK HAKW P A R L I+L ++ E D + +TCP NVF IE+
Sbjct: 163 ARKDRGKIHAKWCPAACVVLRPLARIILCDEFERLPQQHNDVARTYISETCPRNVFTIEN 222
Query: 306 IGSGKKRATVAQPRACTLCREC----LRCGEEWEKRVSI------RRVKDHFIFTIESTG 355
+R V +C C +C + GE+ + +I + + F F+IES G
Sbjct: 223 -----RRVVVKDSNSCIFCNDCFNIPISLGEQGDNANTIWHPALVTQQPNAFYFSIESNG 277
Query: 356 ALSPETLFTEAVKILEDKCERVI 378
++S +F A + + + ++
Sbjct: 278 SISAYDIFLMACDEISARADEIL 300
>gi|70605933|ref|YP_254803.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
DSM 639]
gi|449066125|ref|YP_007433207.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
N8]
gi|449068401|ref|YP_007435482.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
Ron12/I]
gi|73920766|sp|P39471.2|RPOD_SULAC RecName: Full=DNA-directed RNA polymerase subunit D
gi|68566581|gb|AAY79510.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
DSM 639]
gi|449034633|gb|AGE70059.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
N8]
gi|449036909|gb|AGE72334.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
Ron12/I]
Length = 264
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 126/283 (44%), Gaps = 48/283 (16%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN 159
N+ RR I +P MA+++V N S + DE+LAHRL L+P + D L Y + +
Sbjct: 25 VNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEALEHYRPPEECAE 84
Query: 160 EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
K C+ R+ + D +P S +
Sbjct: 85 CKEN--------CDGCYNRVYL--------------------DVEAKDQPLMIYS----R 112
Query: 220 DLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
DL E + I P+ I I LG Q+I LEA G GK H K+SPV+ + R P++
Sbjct: 113 DLKSE--DQMITPVSGAIPIVLLGSKQKISLEARLRLGYGKEHIKYSPVSVSIVRYYPKV 170
Query: 279 VLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRV 338
+L + EK V+ CP VF +E+ + V +C LC ECL+ V
Sbjct: 171 TVL-----GNCEKAVEVCPEGVFAMEN-----NKLVVKNELSCILCEECLK---YCAGSV 217
Query: 339 SIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
SI V++ FI IES G+L PE + EA K L K + ++L
Sbjct: 218 SIESVENKFILEIESVGSLKPERILIEASKSLLRKLSELKSKL 260
>gi|29336059|ref|NP_033116.2| DNA-directed RNA polymerase II subunit RPB3 [Mus musculus]
gi|60223073|ref|NP_001012491.1| DNA-directed RNA polymerase II subunit RPB3 [Rattus norvegicus]
gi|354495470|ref|XP_003509853.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Cricetulus griseus]
gi|12805131|gb|AAH02023.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|59808391|gb|AAH89905.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Rattus
norvegicus]
gi|68534485|gb|AAH99548.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|74145092|dbj|BAE27415.1| unnamed protein product [Mus musculus]
gi|74191349|dbj|BAE30257.1| unnamed protein product [Mus musculus]
gi|74213568|dbj|BAE35592.1| unnamed protein product [Mus musculus]
gi|149032426|gb|EDL87317.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_b
[Rattus norvegicus]
gi|344256627|gb|EGW12731.1| DNA-directed RNA polymerase II subunit RPB3 [Cricetulus griseus]
Length = 275
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 140/316 (44%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + ++++
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSELDED 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
S +P + F + +ES G+L PET+ A
Sbjct: 215 ESQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|198422271|ref|XP_002119444.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 [Ciona intestinalis]
gi|198422273|ref|XP_002119542.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 3 [Ciona intestinalis]
gi|198422275|ref|XP_002119306.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 1 [Ciona intestinalis]
Length = 277
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 142/315 (45%), Gaps = 55/315 (17%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F N V + LT+D+++F + D + AN+ RR+ IAE+PT+AI+ + I N+SV+ DE
Sbjct: 3 FANQPTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
L+HR+GLIP+ +VD + D + ++ F L V C G R V T +L
Sbjct: 63 FLSHRIGLIPLTSDDVVDKIQYSRDCMCDDFCQDCSVEFYLDVKCTGEGTR-QVTTRDLI 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+ N +P+ ++ S+ + SF D+L IA+L GQ +
Sbjct: 122 SM-NPKVVPITSR------SRGDSSKSFGEQDDIL---------------IAKLRKGQSL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+ +A A KG GK HAKW V+ + P+ L + E+ K+ + D ED
Sbjct: 160 KFKAFAKKGFGKEHAKWQCVSAVAFEYDPDNALRHTTYPK-PEEWPKSEYSELADDED-- 216
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+++ + F F +ESTGAL PE + +
Sbjct: 217 -------------------------KYQADFDPHGKPNKFFFNVESTGALRPENIVLNGL 251
Query: 368 KILEDKCERVITELS 382
+L+ K + T+ S
Sbjct: 252 AVLKKKLSDLQTQHS 266
>gi|340976001|gb|EGS23116.1| RNA polymerase II subunit 3-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 344
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 138/308 (44%), Gaps = 55/308 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V++ + ++F+L D + AN+ RR+++AE+PT+AI+ V I NTSV+ DE +AHRL
Sbjct: 19 VKISQADSTRVKFELSNADLSFANSLRRVMLAEIPTIAIDLVEIEVNTSVLADEFIAHRL 78
Query: 138 GLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP+ VD L+ + D E+ ++ LH C G + V + +L +P G
Sbjct: 79 GLIPLNAEGVDQLLYSRDCDCDGYCEQCSVRLSLHAKC-TGDENMHVFSRDL--VPVGER 135
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+ +Q+L N+P L I +L PGQEI+LE A
Sbjct: 136 V----------------------NQNLGTPIINDPDG--LGPLILKLRPGQEIKLECIAK 171
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
KGI K HAKW+P A + P N D+ +
Sbjct: 172 KGIAKEHAKWAPSAAIGFEYDPH---------------------NKLHHLDLWYEQDPKA 210
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
P E + GE ++ V + F F +ES G L P+ + E +K+L+ K
Sbjct: 211 EWPPSEYAEWEEPPQEGEPFDYDA----VPNRFYFNVESAGPLPPDAIVQEGIKVLQQKL 266
Query: 375 ERVITELS 382
+I EL+
Sbjct: 267 AGLIHELT 274
>gi|355712722|gb|AES04444.1| polymerase II polypeptide C, 33kDa [Mustela putorius furo]
Length = 273
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 139/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 2 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 61
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 62 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 120
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 121 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 158
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + ++++
Sbjct: 159 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSELDED 213
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
S +P + F + +ES G+L PET+ A
Sbjct: 214 ESQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 247
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 248 LSGLKKKLSDLQTQLS 263
>gi|452821367|gb|EME28398.1| DNA-directed RNA polymerase II subunit C [Galdieria sulphuraria]
Length = 257
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 111/214 (51%), Gaps = 26/214 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F + + R T ++M+F + D ++ANA RR+ IA++PTMAI+ + + NTS + DE
Sbjct: 3 FAKTPTIHINRQTFNEMDFIITDTDTSVANAIRRVAIAQVPTMAIDLIHMQVNTSSLHDE 62
Query: 132 VLAHRLGLIPII---VDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNE 185
+LAHRLGLIP+ VD FEY + ++ ++ F+L V C +TV + +
Sbjct: 63 LLAHRLGLIPLTSHRVDE--FEYTRDCPYCSDHCLHCSVTFELDVQCTEEA--MTVTSQD 118
Query: 186 L-KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
L + S+L +P FS + P S + I +A+L G
Sbjct: 119 LVNKSAHESQLAASVQP-----------VHFSGEYN--PTLSEE--NGLNGIVLAKLAKG 163
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEI 278
Q I+L A A KG+GK HAKWSPV T Y+ P +
Sbjct: 164 QRIQLTAIAKKGVGKEHAKWSPVCTISYQTDPSV 197
>gi|77735375|ref|NP_001029384.1| DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|73949776|ref|XP_535283.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Canis lupus familiaris]
gi|149699174|ref|XP_001494261.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1 [Equus caballus]
gi|301752940|ref|XP_002912312.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ailuropoda melanoleuca]
gi|348572668|ref|XP_003472114.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Cavia
porcellus]
gi|426242429|ref|XP_004015075.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Ovis aries]
gi|122146160|sp|Q3T0Q3.1|RPB3_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|74268238|gb|AAI02302.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Bos
taurus]
gi|152941118|gb|ABS44996.1| DNA directed RNA polymerase II polypeptide C [Bos taurus]
gi|281346645|gb|EFB22229.1| hypothetical protein PANDA_000038 [Ailuropoda melanoleuca]
gi|296477912|tpg|DAA20027.1| TPA: DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|351697739|gb|EHB00658.1| DNA-directed RNA polymerase II subunit RPB3 [Heterocephalus glaber]
gi|417398216|gb|JAA46141.1| Putative rna polymerase ii subunit polr2c/rpb3 [Desmodus rotundus]
gi|440902632|gb|ELR53402.1| DNA-directed RNA polymerase II subunit RPB3 [Bos grunniens mutus]
Length = 275
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 139/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + ++++
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSELDED 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
S +P + F + +ES G+L PET+ A
Sbjct: 215 ESQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|167517689|ref|XP_001743185.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778284|gb|EDQ91899.1| predicted protein [Monosiga brevicollis MX1]
Length = 276
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 131/307 (42%), Gaps = 51/307 (16%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F ++ R+EV D++ F L D A+AN+FRR++IAE+PTMAI+ V IA NTSV+ DE
Sbjct: 7 FNSSPRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDE 66
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LAHRLGLIP+ + Y + T LCE G V +
Sbjct: 67 FLAHRLGLIPLTSEAADKFYYPRDCT-------------LCEMGCDHCQVMLT--LDVEG 111
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
+E P D S + F + + + +N P I I +L GQ I+L A
Sbjct: 112 HTEEPTHVTTDDLIS---QAAGDFMAVKPISAREESNIRNP---IVICKLAKGQRIQLTA 165
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
A KG GK HAKW P A + P+ L F++ + +
Sbjct: 166 FAKKGFGKEHAKWCPTAGIAFEYDPDNALRH----------------TFFEVPSMWPKSE 209
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
+T+ + E E + + T+ESTGAL + A++ L
Sbjct: 210 FSTLPE--------------GEHEAEYDYKGKPSTYFMTVESTGALPAPLILFSALESLH 255
Query: 372 DKCERVI 378
+K ++
Sbjct: 256 EKLSNLV 262
>gi|67970900|dbj|BAE01792.1| unnamed protein product [Macaca fascicularis]
Length = 251
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 111/218 (50%), Gaps = 29/218 (13%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E + ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
+PN +P+ ++ N + P Y QD DI I +L GQE
Sbjct: 121 -IPNSPRVIPVTSR---NRDNDPNDYV----EQD--------------DILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
+ L A+A KG GK HAKW+P A + P+ L V
Sbjct: 159 LRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|444725635|gb|ELW66196.1| DNA-directed RNA polymerase II subunit RPB3 [Tupaia chinensis]
Length = 707
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 139/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 435 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 494
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 495 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 553
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 554 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 591
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + ++++
Sbjct: 592 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSELDED 646
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
S +P + F + +ES G+L PET+ A
Sbjct: 647 ESQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 680
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 681 LSGLKKKLSDLQTQLS 696
>gi|45360897|ref|NP_989124.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|38511942|gb|AAH61444.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
gi|89266865|emb|CAJ83921.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|111598412|gb|AAH80362.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
Length = 275
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 133/319 (41%), Gaps = 65/319 (20%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D AIAN+ RR+ IAE+PT+AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVK----T 183
+AHR+GLIP+ IVD + D + ++ F L V C R +
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLVS 122
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
N L+ +P S + + P Y QD DI I +L
Sbjct: 123 NNLRVIPVTSR---------SRDNDPNDYV----EQD--------------DILIVKLRK 155
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI 303
GQE+ L A+A KG GK HAKW+P A + P+ L
Sbjct: 156 GQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL----------------------- 192
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
+ +P EE E + F + +ES G+L PET+
Sbjct: 193 -------RHTVYPKPEEWPKSEYSEIDEEEAEAPYDPTGKPERFYYNVESCGSLRPETIV 245
Query: 364 TEAVKILEDKCERVITELS 382
A+ L+ K + T+LS
Sbjct: 246 LSALSGLKKKLSDLQTQLS 264
>gi|116205067|ref|XP_001228344.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
gi|88176545|gb|EAQ84013.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
Length = 338
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 138/309 (44%), Gaps = 58/309 (18%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V+++++ D ++F+L D A AN+ RR+++ E+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 17 VVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAHR 76
Query: 137 LGLIPIIVD---PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ D LF + D E ++ LH C G + V +L +P G
Sbjct: 77 LGLIPLNADGVEGLLFARDCDCDGCCEHCSVRLTLHAKC-TGDENMHVFARDL--VPTGE 133
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ ++ S S+ L I +L PGQEI+LE A
Sbjct: 134 RI-----------NQVLGTPVVSDSEG-------------LGALILKLRPGQEIKLECIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
KGI K HAKW+P A + P KL T D
Sbjct: 170 KKGIAKEHAKWAPSAAIGFEYDPH------------NKLRHT---------DFWYETDAK 208
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
T P E + GE ++ V + F F +ES G L P+T+ +E +K+++ K
Sbjct: 209 TEWPPSEYAAWEEPPQEGEPFDYDA----VPNRFYFNVESAGNLPPDTIVSEGIKVIQQK 264
Query: 374 CERVITELS 382
+I EL+
Sbjct: 265 LAGLIHELA 273
>gi|432862447|ref|XP_004069860.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oryzias latipes]
Length = 275
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 138/328 (42%), Gaps = 83/328 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D A+AN+ RR+ ++E+PT+AI+ + I N+SV+ DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ D + + D + E + ++ L V C R + L
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTCEDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD-------------HFIFTIEST 354
R TV PR EEW K +D F + +ES
Sbjct: 193 ----RHTVY-PRP-----------EEWPKSEYSEIEEDEVQAPYDPNGKPERFYYNVESC 236
Query: 355 GALSPETLFTEAVKILEDKCERVITELS 382
G+L PET+ A+ +L+ K + T+LS
Sbjct: 237 GSLRPETVVMSALAVLKKKLSDLQTQLS 264
>gi|395839490|ref|XP_003792622.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Otolemur
garnettii]
Length = 275
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 139/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E+ ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLV- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ R S S+D P N DI I +L GQE+
Sbjct: 122 ------------------SNHHRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + ++++
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSELDED 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
S +P + F + +ES G+L PET+ A
Sbjct: 215 ESQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|335289326|ref|XP_003355849.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Sus
scrofa]
Length = 275
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 141/316 (44%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLIS 122
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
P +P+ ++ N + P Y QD DI I +L GQE+
Sbjct: 123 NSPRV--IPVTSR---NRDNDPSDYV----EQD--------------DILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + ++++
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSELDED 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
S +P + F + +ES G+L PET+ A
Sbjct: 215 ESQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|47221930|emb|CAF98942.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 137/328 (41%), Gaps = 83/328 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D A+AN+ RR+ ++E+PT+AI+ + I N+SV+ DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ IVD + D + ++ L V C R + L
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILVVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ VL
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNVL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH-------------FIFTIEST 354
R TV PR EEW K +D F + +ES
Sbjct: 193 ----RHTVY-PRP-----------EEWPKSEYSEIEEDEIQAPFDPNGKPEKFFYNVESC 236
Query: 355 GALSPETLFTEAVKILEDKCERVITELS 382
G+L PE + A+ +L+ K + T+LS
Sbjct: 237 GSLRPENIVMSALAVLKKKLSDLQTQLS 264
>gi|387018210|gb|AFJ51223.1| DNA-directed RNA polymerase II subunit RPB3-like [Crotalus
adamanteus]
Length = 275
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 143/316 (45%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L+ D+++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELSDDNVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ +VD + D ++ F L V C R V + +L
Sbjct: 63 FIAHRLGLIPLTSDGVVDKLQYSRDCNCDEFCPDCSVEFSLDVRCNEDQTR-HVTSRDL- 120
Query: 188 WLPNGSE-LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
+ N S+ +P+ ++ N P Y P+ DI I +L GQE
Sbjct: 121 -ISNNSQVIPVTSRRRDN---DPNDYVE--------PD----------DILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
+ L A+A KG GK HAKW+P A + P+ L V + E+ K+ + +I
Sbjct: 159 LRLRAYATKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPK-PEEWPKS------EYSEI 211
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ +A P + F + +ES G+L PET+ A
Sbjct: 212 DEDEAQAAY-DPNG----------------------KPERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|387592898|gb|EIJ87922.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
Length = 297
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 57/292 (19%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ + + ID ++ NA RR +I+++PT+AI V I N +V+ DE+L+HRLGLIPIIVD +
Sbjct: 46 LSYRINHIDPSVLNAMRRTIISDVPTVAIHWVYIRENETVMADEILSHRLGLIPIIVDAK 105
Query: 148 LFEYMSEN------DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
FE + + +KN+I +L V+ LTV++N++K L
Sbjct: 106 DFERVVKTPELDPFTELTDKNSIQMEL-VITNNTDKILTVRSNDIKILSK---------- 154
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
+N I+ ++ I RL PG++IE A+ G G+ H
Sbjct: 155 ------------------------TNAAIKQ--NVIITRLVPGKKIECRLFAIIGTGREH 188
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
+KW P + +YR + ++ + + + + +K + D + +G+ A V + +
Sbjct: 189 SKWMPTSVCYYRTIKKLEMKDPSKAAEIQKYFR-------DGFSVRNGQ--AIVDEDKLL 239
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ +++ + I D F+F IE A SPET+ + ++I++DK
Sbjct: 240 V----NMDIEKKYPNEIKIHTESDSFLFEIEGITA-SPETILKKGIRIIKDK 286
>gi|312083749|ref|XP_003143992.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307760845|gb|EFO20079.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Loa loa]
Length = 275
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 131/308 (42%), Gaps = 61/308 (19%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L + + F L D ++AN+ RRI +AE+PTMAI+ V I +NTSV+ DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNTSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ +VD F + + + +L V C+ G R V T +L+
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLRVRCDDEGIR-AVTTADLE 121
Query: 188 WLPNGSELPLETKPDSNPSS--KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ PD P+ R + S+ D DI I +L GQ
Sbjct: 122 ----------TSNPDVAPACGVHIRNRNAEESASD--------------DILIVKLRKGQ 157
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
+++++ A KG GK HAKW+P + P+ L
Sbjct: 158 DVDIKCIAKKGFGKEHAKWNPTCCVSFEYDPDNAL------------------------- 192
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
+ +A+P +E+E + F FT+ESTGAL E +
Sbjct: 193 -----RHTVLAKPEEWPKSEYSQLEDDEYEASFDPMAKPNKFWFTVESTGALKAENIILS 247
Query: 366 AVKILEDK 373
+ +L+ K
Sbjct: 248 GISVLKKK 255
>gi|148234336|ref|NP_001084998.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
laevis]
gi|47682270|gb|AAH70601.1| MGC81245 protein [Xenopus laevis]
Length = 275
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 140/320 (43%), Gaps = 67/320 (20%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D AIAN+ RR+ IAE+PT+AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVK----T 183
+AHR+GLIP+ IVD + D + ++ F L V C R +
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLDVRCTEDQTRHVTSRDLVS 122
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
N L+ +P S + + P Y QD DI I +L
Sbjct: 123 NNLRVIPVTSR---------SRDNDPNDYV----EQD--------------DILIVKLRK 155
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-D 302
GQE+ L A+A KG GK HAKW+P A + P+ L V + E P + + +
Sbjct: 156 GQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSE 210
Query: 303 IEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETL 362
I++ + +P + F + +ES G+L PET+
Sbjct: 211 IDEEEAQAPYDPTGKP--------------------------ERFYYNVESCGSLKPETI 244
Query: 363 FTEAVKILEDKCERVITELS 382
A+ L+ K + T+LS
Sbjct: 245 VLSALSGLKKKLSDLQTQLS 264
>gi|432119373|gb|ELK38451.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 275
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 138/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ I E+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAVANSLRRVFIGEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVDQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + ++++
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSELDED 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
S +P + F + +ES G+L PET+ A
Sbjct: 215 ESQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|327287828|ref|XP_003228630.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Anolis
carolinensis]
Length = 275
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 139/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L+ ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELSDENVKFIVENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + + + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDVVDKLQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI I +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KG GK HAKW+P A + P+ L V + E P + + +I++
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSEIDED 214
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ +P + F + +ES G+L PET+ A
Sbjct: 215 EAQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 249 LSGLKKKLSDLQTQLS 264
>gi|91772121|ref|YP_564813.1| DNA-directed RNA polymerase subunit D [Methanococcoides burtonii
DSM 6242]
gi|91711136|gb|ABE51063.1| DNA-directed RNA polymerase subunit D [Methanococcoides burtonii
DSM 6242]
Length = 267
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 134/299 (44%), Gaps = 44/299 (14%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++++ L+ +F L AA AN RR ++A++PT+AI+ V I NNTSV+ DE LA
Sbjct: 1 MEIDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLAL 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGG-PRLTVKTNELKWLPNGSE 194
RLGLIP+ + + V + C+ G P TV
Sbjct: 61 RLGLIPL---------------TTSFDDFVPQDKCTCDGAGCPACTVS------------ 93
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
L L + D + + + SS ++ P N PI +D+ + GQ++ LEA A
Sbjct: 94 LTLSVETDESGQTIVHSGDIVSSDPNVQPADKNIPI---IDLRV-----GQKVVLEAIAH 145
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G HAKW Y+++P IV E + + +CP N+ + D G
Sbjct: 146 MGYGNKHAKWQAGVACGYKIMP-IVTFEGC--DGCGICINSCPRNIIQLID---GSAMVA 199
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
C+LCR C + +++ + FIFT+ES G+ + + L AV ++ K
Sbjct: 200 DEDLLKCSLCRLCQDSCD--INAITVSADEKSFIFTMESDGSYTAQQLILNAVNTIKGK 256
>gi|149032425|gb|EDL87316.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_a
[Rattus norvegicus]
Length = 241
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 27/217 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
L A+A KG GK HAKW+P A + P+ L V
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|241853662|ref|XP_002415909.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
gi|215510123|gb|EEC19576.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
Length = 274
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 136/315 (43%), Gaps = 58/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE+ T+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + + ++ F + V C R V T +LK
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTIDVKCLDEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS PR S +D E+ DI I +L GQE+
Sbjct: 122 ------------------SSDPRVVPVTSRHKDDTNEYGETD-----DILIVKLRKGQEV 158
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+ A+A KG GK HAKW+P + P+ N F
Sbjct: 159 KARAYAKKGFGKEHAKWNPTCGVAFEYDPD---------------------NAF------ 191
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ T +P ++ E + + F F +ES+GAL PET+ +
Sbjct: 192 ---RHTTYPRPEEWPKSEYSEIEDDKVEADFIVEGKPNKFYFNVESSGALKPETIVLSGL 248
Query: 368 KILEDKCERVITELS 382
+L+ K + T+LS
Sbjct: 249 NVLKKKLSDLQTQLS 263
>gi|221043080|dbj|BAH13217.1| unnamed protein product [Homo sapiens]
Length = 424
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 133/307 (43%), Gaps = 59/307 (19%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+I D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ L V + E
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE----------------- 202
Query: 308 SGKKRATVAQPRACTLCRECLRCGE-EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
P++ E L E E + + F + +ES G+L PET+ A
Sbjct: 203 ---------WPKS-----EYLELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSA 248
Query: 367 VKILEDK 373
+ L+ K
Sbjct: 249 LSGLKKK 255
>gi|410907303|ref|XP_003967131.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Takifugu rubripes]
Length = 275
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 136/328 (41%), Gaps = 83/328 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D A+AN+ RR+ ++E+PT+AI+ + I N+SV+ DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ IVD + D + ++ L V C R + L
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTCDDFCSECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDILVVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH-------------FIFTIEST 354
R TV PR EEW K +D F + +ES
Sbjct: 193 ----RHTVY-PRP-----------EEWPKSEYSEIEEDEVQAPFDPHGKPEKFFYNVESC 236
Query: 355 GALSPETLFTEAVKILEDKCERVITELS 382
G+L PE + A+ +L+ K + T+LS
Sbjct: 237 GSLRPENIVMSALAVLKKKLSDLQTQLS 264
>gi|221054724|ref|XP_002258501.1| dna-directed rna polymerase II [Plasmodium knowlesi strain H]
gi|193808570|emb|CAQ39273.1| dna-directed rna polymerase II, putative [Plasmodium knowlesi
strain H]
Length = 334
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 147/309 (47%), Gaps = 39/309 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VE+ +LTKD+M F L + +ANA RRI+++E+PT+AI+ V + NTS DE LAHRL
Sbjct: 15 VEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHRL 74
Query: 138 GLIPIIVDPR---LFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GLIPI D R FE+ + K TI + + V C ++ V +++ + +
Sbjct: 75 GLIPI--DSRNVKNFEFREKCKCKETCSKCTIQYLIQVKCNNVS-KIDVTHYDIESVEHE 131
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+P+ P + E NN + I I L Q + ++
Sbjct: 132 PNVPM-----------PVPF-----------EDRNNKMAQSNAIPIVTLSKNQTLHMKLI 169
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIV----LLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
A KGIGK HAKW P A YR+ ++ L+ + E L + + + +++ +
Sbjct: 170 ATKGIGKMHAKWIP-ANVSYRIDHKVSIKHHLINSLSPEHKLLLANSLNKDCYVLKNAEA 228
Query: 309 GKKRAT--VAQPRACTLCRECLRCGEEWEKRVSIRRVKDH--FIFTIESTGALSPETLFT 364
+ + + + + + C+ E + ++ + D F F +ES G++ PE +
Sbjct: 229 HDRDMSLRLNENMSVVMAESCIEVLNELGYKDVVKIIYDETKFHFKVESVGSMPPEQVVE 288
Query: 365 EAVKILEDK 373
A++ILE+K
Sbjct: 289 MAIEILENK 297
>gi|156371210|ref|XP_001628658.1| predicted protein [Nematostella vectensis]
gi|156215640|gb|EDO36595.1| predicted protein [Nematostella vectensis]
Length = 274
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 131/315 (41%), Gaps = 57/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V+++ LT ++++F + ++AN RRI IAE PT+AI+ V I NNTSV+ DE
Sbjct: 3 YANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGL+P+ +VD F D + +I F L V C R + +
Sbjct: 63 FIAHRLGLVPLTSDEVVDRMTFSRDCTCDEFCDDCSIEFTLDVKCTDDSTRHVTTQDLIS 122
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
P +P+ ++ N R Y QD DI I +L GQE+
Sbjct: 123 TNPRC--VPVTSR---NREDDSREYM----EQD--------------DILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A A KG K HAKW+P A + P+ L
Sbjct: 160 KLRAFAKKGFAKEHAKWNPTAGVAFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ T +P ++++ D F +ES G+L PE + +
Sbjct: 193 ---RHTTYPRPEEWPKSEYTELEEDQYQAPFDPNAKADKFYINVESCGSLKPENIVLSGL 249
Query: 368 KILEDKCERVITELS 382
IL+ K + T+ S
Sbjct: 250 AILKKKLSDLQTQHS 264
>gi|156551093|ref|XP_001603079.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Nasonia vitripennis]
Length = 276
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 141/318 (44%), Gaps = 63/318 (19%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ V I N++V+ DE
Sbjct: 3 YANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LAHR+G+IP+I D + + I + C P V
Sbjct: 63 FLAHRIGMIPLISDEVV-------------DRIQYTRDCQCMDFCPECCV---------- 99
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN------NPIRPMLDITIARLGPGQ 245
E L+ K + T SS Q ++P S N +I I +L GQ
Sbjct: 100 --EFTLDVKCSDETTRHVTTADLKSSEQRVVPVTSKHRDDDANEYGETDEILIVKLRKGQ 157
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIE 304
E++L A+A KG GK HAKW+P A + P+ + + + E P + + ++E
Sbjct: 158 ELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNSMRHTLFPKPDE-----WPKSEYSELE 212
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
D G+ A WE + + + F +ES+GAL PE +
Sbjct: 213 D---GQDEAPF-----------------NWEAK------PNKYFFNVESSGALKPENIVM 246
Query: 365 EAVKILEDKCERVITELS 382
+ L++K + T+LS
Sbjct: 247 MGIAALKNKLSNLQTQLS 264
>gi|68070451|ref|XP_677137.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
gi|56497133|emb|CAH93597.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
Length = 331
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 147/310 (47%), Gaps = 38/310 (12%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E+ ++K++MEF L +AA+ANA RRI+++E+PT+AI+ V + NTS DE +AHR
Sbjct: 10 KIEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 69
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+GLIPI + F + + + T+ + + V C ++ V +++ L +
Sbjct: 70 IGLIPIDSRNIKSYEFRERCKCKETCSRCTVQYIIEVKCNNAN-KINVSHYDIEALDHEP 128
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAH 252
+P+ P+ N NN I M + I I L Q I ++
Sbjct: 129 NIPMPI-PNDN---------------------KNNNIEKMENAIPIVTLSKNQTIHMKLT 166
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVN-----VFDIEDIG 307
A KGIGK HAKW P ++ ++ +++ + E + K K N + ++++
Sbjct: 167 ATKGIGKMHAKWIPANVSY--IIDHKIVINNHEVDKMSKEHKLLIANNLNPDFYILKEMD 224
Query: 308 SGKK-RATVAQPRACTLCRECLRCGEEWEKRVSIRRV---KDHFIFTIESTGALSPETLF 363
+ +++ + + C E I ++ + F F IES G++ PE +
Sbjct: 225 DDRNVELRLSENMSVVMAESCRDALNELGYNKDIVKIIYDETKFHFKIESVGSMPPEQIV 284
Query: 364 TEAVKILEDK 373
A++ILE K
Sbjct: 285 EMAIEILESK 294
>gi|268566109|ref|XP_002639637.1| C. briggsae CBR-RPB-3 protein [Caenorhabditis briggsae]
Length = 280
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 137/314 (43%), Gaps = 49/314 (15%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +EV LT D ++F L D ++AN+ RR+ +AE+PT+AI+ V I NTSV+ DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYM-SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
+AHR+GLIP + D + +Y E ++ +I F L C L V T +L+
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTRCECAEFCDECSIPFILQTKCTDEA-TLAVTTADLR- 120
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
P G E + + F + +++L I +L GQE+
Sbjct: 121 -PLGVETTVRPACGEALRERGAVRDEFHAREEIL---------------IVKLRKGQELN 164
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
L+A+A KG GK HAKW+P + P+ L + V+ P + S
Sbjct: 165 LKAYAKKGFGKEHAKWNPTCGVAFEYDPDNALRHTIYPN-----VEEWPKSDHSSLPEDS 219
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
+K A Q + F F+IE TGAL + + T +
Sbjct: 220 AEKEAPFDQ-----------------------NAKPNKFWFSIEGTGALPVQRIVTMGIG 256
Query: 369 ILEDKCERVITELS 382
IL+ K E + LS
Sbjct: 257 ILKRKLEELNMALS 270
>gi|15922388|ref|NP_378057.1| DNA-directed RNA polymerase subunit D [Sulfolobus tokodaii str. 7]
gi|20978711|sp|Q96YW0.1|RPOD_SULTO RecName: Full=DNA-directed RNA polymerase subunit D
gi|15623177|dbj|BAB67166.1| DNA-directed RNA polymerase subunit D [Sulfolobus tokodaii str. 7]
Length = 264
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 129/293 (44%), Gaps = 53/293 (18%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L+K++ LI + N+ RR I +P MA+++V N S + DE+LAHRL +I
Sbjct: 6 LSKENNSLKLIVGNYPLELVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLAMI 65
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPR--LTVKTNELKWLPNGSELPLE 198
P D L Y + + K C+ R L V NE +
Sbjct: 66 PFSSDEALDHYRPPEECAECKEN--------CDGCYARVYLDVGANEGE----------- 106
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGI 257
T S+DL + + I P+ +I I LGP Q++ LEA G
Sbjct: 107 --------------TVMVYSRDL--KTDDPAIVPISGNIPIVLLGPKQKVTLEARLRLGY 150
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
GK H K+SPV+ A R P + + + EK + CP VF +E+ + V
Sbjct: 151 GKEHIKFSPVSIAVVRYYPHVEV-----KGNCEKAFEVCPEGVFGMEN-----GKLFVKN 200
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
ACTLC EC++ E + I V++ +I IES G+L PE + EA K L
Sbjct: 201 EVACTLCEECIK---YCENNIFISAVENKYILEIESVGSLKPERILIEAGKSL 250
>gi|72387431|ref|XP_844140.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma brucei
TREU927]
gi|62360648|gb|AAX81059.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei]
gi|70800672|gb|AAZ10581.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261327301|emb|CBH10277.1| DNA-directed RNA polymerase II subunit 3,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 124/298 (41%), Gaps = 39/298 (13%)
Query: 90 FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLF 149
F L +D + AN RR+L+AE+P + +E V I NTSV+ DE++AHR+GL+P+
Sbjct: 21 FKLNEVDNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLY------ 74
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
S + F LC G T ELK ++ L+ DS
Sbjct: 75 --------SKRAKQMQFFHDCLCGGTGCIECQITGELKVRCPSNQHSLQVFADSLKIDDE 126
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
Y S + + + LG QEI L K I KTHAK+ PV+T
Sbjct: 127 GVYPVSSEER---------------GVWLLTLGRSQEINLRVLIRKSIAKTHAKFMPVST 171
Query: 270 AWYRMLPEIVLLEDV-EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECL 328
R PE++L +DV D E+L + V I LC ECL
Sbjct: 172 VSMRYEPEVILNKDVISSLDPEQLRQWMRSCVHRPHSIAESNGEGHTGHIDVNKLCEECL 231
Query: 329 ----RCGEEWEKRVSIRRVKD-----HFIFTIESTGALSPETLFTEAVKILEDKCERV 377
E V R KD +F FT+E+TG L L +AV +L K +RV
Sbjct: 232 LKEPSVVSFTEPLVFARPKKDARGHYNFTFTVETTGVLPVLQLIRDAVDVLRRKLQRV 289
>gi|126296213|ref|XP_001365715.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Monodelphis domestica]
Length = 275
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 140/318 (44%), Gaps = 63/318 (19%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP--IRPMLDITIARLGPGQ 245
S+ PR S S+D N+P DI I +L GQ
Sbjct: 122 ------------------SNTPRVIPVTSRSRD------NDPSDYVEQDDILIVKLRKGQ 157
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIE 304
E+ L A+A KG GK HAKW+P A + P+ L V + E P + + +I+
Sbjct: 158 ELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSEID 212
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
+ + +P + F + +ES G+L PET+
Sbjct: 213 EDEAQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVL 246
Query: 365 EAVKILEDKCERVITELS 382
A+ L+ K + T+L+
Sbjct: 247 SALSGLKKKLSDLQTQLT 264
>gi|322793846|gb|EFZ17186.1| hypothetical protein SINV_07940 [Solenopsis invicta]
Length = 325
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 148/343 (43%), Gaps = 64/343 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + +Y + + + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDEASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV--------EDEDAEKLVKTCPV 298
++L A+A KG GK HAKW+P A + P+ + + + E E C
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNSMRHTLYPKPDEWPKSEYTELEEDQCEY 218
Query: 299 NVFDIEDIGSGKKRATVAQPRACTLCRECL----------RCGE---------EWEKRVS 339
N+F +R V C L GE +E +
Sbjct: 219 NLF--------YERNIVMMTSEIKFCYGILIWLKQFTSIFSIGENLIFYMHHLSYEAPFN 270
Query: 340 IRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ + F +ES+GAL PE + + L++K + T+LS
Sbjct: 271 WEAKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLS 313
>gi|402590881|gb|EJW84811.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 275
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 129/314 (41%), Gaps = 57/314 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L + + F L D ++AN+ RRI +AE+PTMA++ V I +N+SV+ DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAVDWVQIESNSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ +VD F + + + +L V C+ G R +
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLRVRCDDEGIRAVTTAD--- 119
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
LET SNP P + N DI I +L GQ+I
Sbjct: 120 ---------LET---SNPDVAPACGVHIRN--------RNAEENASDDILIVKLRKGQDI 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+++ A KG GK HAKW+P + P+ L
Sbjct: 160 DIKCIAKKGFGKEHAKWNPTCCVAFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +A+P +E+E + F FT+ESTGAL E + +
Sbjct: 193 ---RHTVLAKPEEWPKSEYSQLEDDEYEAPFDPMAKPNKFWFTVESTGALKAENIILSGI 249
Query: 368 KILEDKCERVITEL 381
+L+ K + +L
Sbjct: 250 SVLKKKLADIQNQL 263
>gi|302348806|ref|YP_003816444.1| DNA-directed RNA polymerase subunit D [Acidilobus saccharovorans
345-15]
gi|302329218|gb|ADL19413.1| DNA-directed RNA polymerase subunit D [Acidilobus saccharovorans
345-15]
Length = 287
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 138/311 (44%), Gaps = 46/311 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V ++ L + + G A NA RR+ ++E+PTMA++ V +N S + DE++AHR
Sbjct: 5 KVSIVELGNSRITVSMEGFPVAYGNALRRLALSEVPTMAVDFVYFYDNESSVYDEIIAHR 64
Query: 137 LGLIPIIVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
LGL+ + D L +Y S + SN E ++ F ++
Sbjct: 65 LGLLVLRSDEALRKYGSPEECSNASENDSHCF--------------------------AQ 98
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT-IARLGPGQEIELEAHA 253
+ LE + + +S + + DL +FS+ IRP+ T I L PGQ I L +A
Sbjct: 99 VYLEYEVPQDAAS-----GVYVKASDL--KFSDPDIRPIYPETPIVYLAPGQRIHLVGYA 151
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
G G H KWSP + A R + + D K+ C + +D+ K
Sbjct: 152 RLGRGYEHGKWSPASVAVLRYSVHV-------EYDPSKVTSECLECISAYQDLVGAIKGG 204
Query: 314 TVAQPRA-CTLCRECLRCGEEWEKRVSIRRVKD--HFIFTIESTGALSPETLFTEAVKIL 370
+ + + LR EE + +I+ V D T+ESTGAL P + EA L
Sbjct: 205 SAGRLELNYKVNTSALRYCEEESCKGAIKVVYDPSKLYLTVESTGALEPARIIWEATNCL 264
Query: 371 EDKCERVITEL 381
K ++++ EL
Sbjct: 265 ARKADKLLKEL 275
>gi|399949868|gb|AFP65525.1| DNA-directed RNA polymerase II [Chroomonas mesostigmatica CCMP1168]
Length = 304
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 149/315 (47%), Gaps = 39/315 (12%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N+ R+ + ++ + + L ID ++ N+ RR++I E+PTMAI+ + + N+S+ DE L
Sbjct: 2 NSSRLTIDSISNFETKISLKEIDISLINSLRRVMINEIPTMAIDLIFVEINSSIFHDEFL 61
Query: 134 AHRLGLIPIIVD-PRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
AHRLGLIP+ + F Y E + K ++ F L V+ + R T+ + P
Sbjct: 62 AHRLGLIPLFSESANQFRYTRECECEKFCSKCSVAFSLDVIA-KDKYRDVFSTDLIVLNP 120
Query: 191 NGSELPLETKP--DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
S P DS + PR + P+L I++L GQ ++
Sbjct: 121 KESFFAKHVSPIHDSGTADFPR-------------------LEPIL---ISKLSQGQRLK 158
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL-LEDV----EDEDAEKLVKTCPVNVFDI 303
L A KGIG HAKWSP++ + I + + D+ E + +LVK P +
Sbjct: 159 LIGVAKKGIGLEHAKWSPISIIRLKRQNTIYININDLNFMTETKIKHELVKNFP-EILKQ 217
Query: 304 ED-----IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALS 358
D + KK+ +++ + L ++ + +K + I K +F IESTGAL
Sbjct: 218 NDSNQNLVYHEKKKFSLSVLTSQKLIDFLIKKKIDPKKVIKINPDKINFEIYIESTGALK 277
Query: 359 PETLFTEAVKILEDK 373
P+ +F A+ IL+ K
Sbjct: 278 PDFIFQNAIDILKKK 292
>gi|321475674|gb|EFX86636.1| hypothetical protein DAPPUDRAFT_313021 [Daphnia pulex]
Length = 274
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 140/315 (44%), Gaps = 58/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +++ LT+++++F + D ++AN+ RR+ IAE PT+AI+ V N++V+ DE
Sbjct: 3 YANQPNLKLTELTEENVKFQISDTDLSVANSLRRVFIAETPTLAIDWVQFEANSTVLFDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+ D + + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRVGLIPLTSDESVEKMQYSRDCTCPDFCVDCSVEFTLDVKCSEDVTR-NVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR + S + P+ ++N +I I +L GQE+
Sbjct: 122 ------------------STDPRVVPATSKRDEEPPDDNDN------EILIVKLRKGQEL 157
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
++ A+A KG GK HAKW+P A + P+ L + + E P + + ++G
Sbjct: 158 KMRAYAKKGFGKEHAKWNPTAGVAFEYDPDNSLRHTLFPKPEE-----WPRSEY--SELG 210
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ P + F +ES G+L PE + +
Sbjct: 211 ESDQHQAPYDPDG----------------------KPNKFFVNVESCGSLRPENIVLMGI 248
Query: 368 KILEDKCERVITELS 382
IL+ K + T+LS
Sbjct: 249 AILKKKLSDLQTQLS 263
>gi|170581298|ref|XP_001895623.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Brugia malayi]
gi|158597360|gb|EDP35528.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative [Brugia
malayi]
Length = 275
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 126/306 (41%), Gaps = 57/306 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L + + F L D ++AN+ RRI +AE+PTMAI+ V I +N+SV+ DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ +VD F + + + +L V C+ G R +
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLRVRCDDEGIRAVTTAD--- 119
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
LET SNP P + N DI I +L GQ+I
Sbjct: 120 ---------LET---SNPDVAPACGVHIRN--------RNAEENASDDILIVKLRKGQDI 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+++ A KG GK HAKW+P + P+ L
Sbjct: 160 DIKCIAKKGFGKEHAKWNPTCCVAFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +A+P +E+E + F FT+ESTGAL E + +
Sbjct: 193 ---RHTMLAKPEEWPKSEYSQLEDDEYEAPFDPMAKPNKFWFTVESTGALKAENIILSGI 249
Query: 368 KILEDK 373
+L+ K
Sbjct: 250 SVLKKK 255
>gi|242011218|ref|XP_002426352.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212510429|gb|EEB13614.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 275
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 136/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE
Sbjct: 3 YANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
++HR+GLIP+ D + D + + ++ F L V C R V T +LK
Sbjct: 63 FISHRVGLIPLTSDEVVDRIQYTRDCTCLDFCPECSVEFTLDVKCTDDHTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDTSEYGEAD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
++L A+A KG GK HAKW+P A + P+ + + + E
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPKPDE---------------- 202
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
K T C WE R + F F +ES GAL PE +
Sbjct: 203 -WPKSEYTELDDTQC-------EAPYNWEAR------PNKFYFNVESVGALRPENIVMMG 248
Query: 367 VKILEDKCERVITELS 382
V +L++K + T+LS
Sbjct: 249 VAVLKNKLSNLQTQLS 264
>gi|253744264|gb|EET00492.1| DNA-directed RNA polymerase RPB3 [Giardia intestinalis ATCC 50581]
Length = 326
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 145/319 (45%), Gaps = 41/319 (12%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++++ T +E ++ G+D + N RR + A++PT+AI+ V +N++ + +E +AHRL
Sbjct: 5 IKILSKTDLKLELEIRGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIAHRL 64
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIP+ L +S T +E+++ + +G ++ T +++ + +
Sbjct: 65 GLIPLRTAGPL-SAISYWYTCDEEHSTEIECRECTFKGTLNVSNDTTKIRVVTDK----- 118
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
+ K D S + S+ L P P+L +L PG+ I +A K
Sbjct: 119 DIKFDHGGIS------TLSNYMGSLLGVIEAPSIPIL-----KLAPGESINALLYARKDR 167
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVE-------DEDAEKLVKTCPVNVFDIEDIGSGK 310
GK HAKW P A R L +I+L ++ E D + TCP VF IE+
Sbjct: 168 GKIHAKWCPAACVVLRPLAKIILCDEFEKLPQQHNDIARSYISDTCPRKVFTIEN----- 222
Query: 311 KRATVAQPRACTLCRECLRC-----GEE------WEKRVSIRRVKDHFIFTIESTGALSP 359
+R V P C C +C G+ W + + + D F F+IES G+LS
Sbjct: 223 RRVVVKDPNNCIFCNDCFNIPISLDGQNTDANTIWHPAL-VTQQPDAFYFSIESNGSLSA 281
Query: 360 ETLFTEAVKILEDKCERVI 378
+F A + + + V+
Sbjct: 282 YDIFLMACDEISSRADEVL 300
>gi|308159629|gb|EFO62154.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia P15]
Length = 326
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 143/328 (43%), Gaps = 53/328 (16%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N ++V+ T +E ++ G+D + N RR + A++PT++I+ V +N + + +E +A
Sbjct: 2 NPSIKVLSKTDLKLELEISGVDISYVNGLRRAIYADVPTLSIDIVKFLDNNTTLTEEFIA 61
Query: 135 HRLGLIPIIVDPRL------FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
HRLGLIP+ L + E+ T E FK + ++ V T++
Sbjct: 62 HRLGLIPLKTAGPLSAISYWYTCDEEHSTEIECRECTFKGTLNISNDSTKIRVVTDKDIH 121
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
+G + T + SS T T P P+L +L PG+ I
Sbjct: 122 FDHGG---ISTLSNYLESSLGVTET---------------PSIPIL-----KLAPGESIN 158
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE-------DEDAEKLVKTCPVNVF 301
+A K GK HAKW P A R L I+L ++ E D + +TCP NVF
Sbjct: 159 ALLYARKDRGKIHAKWCPAACVVLRPLARIILCDEFERLPQQHNDIARTYISETCPRNVF 218
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRC-------GEE----WEKRVSIRRVKDHFIFT 350
IE+ +R V P +C C +C GE W + + + + F F+
Sbjct: 219 TIEN-----RRVVVKDPNSCIFCNDCFNVPISLDEQGESTNTIWHPAL-VTQQPNAFYFS 272
Query: 351 IESTGALSPETLFTEAVKILEDKCERVI 378
IES G++S +F A + + + ++
Sbjct: 273 IESNGSISAYDIFLMACDEISARADEIL 300
>gi|20094910|ref|NP_614757.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
gi|23822100|sp|Q8TVB8.1|RPOD_METKA RecName: Full=DNA-directed RNA polymerase subunit D
gi|19888146|gb|AAM02687.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
Length = 275
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 140/306 (45%), Gaps = 53/306 (17%)
Query: 76 FRVEVIRLTKDDME---FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
RV + K D+E F + A N RR L +PT+ IE+V+I N + + DE+
Sbjct: 4 LRVRLYDYRKADVERATFIIEETSAEFVNTIRRALYTLVPTLRIEEVIIYENDTPMYDEM 63
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LAHRLGLIP+ VD + F+L LC+ GG G
Sbjct: 64 LAHRLGLIPLRVD----------------DIDQFELPDLCDCGG--------------KG 93
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEA 251
E + + + + Y ++DL +F + + P D I +G Q I LE
Sbjct: 94 CE-KCQVRAELEVEGPTKVY-----ARDL--KFDHPDVEPAFPDTLITEVGEDQRIRLEV 145
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
AV G+G HAKW PV+ Y+ LPE+ + ED E +K+ CP + IE+ +
Sbjct: 146 IAVPGLGLEHAKWKPVSAVGYKGLPELEIDEDKLKE--KKITYECPQGIIRIEN----GE 199
Query: 312 RATVAQPR--ACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ + R C + +E R E + V +R D F+F +E+ G++S +T +A+
Sbjct: 200 VVHIDEDRLPECRMYKEYER---ETDGAVRVRLRDDAFVFNVETDGSMSLDTAILKALDA 256
Query: 370 LEDKCE 375
+E K E
Sbjct: 257 IEHKLE 262
>gi|374633843|ref|ZP_09706208.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Metallosphaera yellowstonensis MK1]
gi|373523631|gb|EHP68551.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Metallosphaera yellowstonensis MK1]
Length = 262
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 131/302 (43%), Gaps = 55/302 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
++VI K + + G N+ RR + +P MA+++V + N S + DEVLAHRL
Sbjct: 3 IKVIEEEKGHINLLIHGYPLEFVNSVRRACMLFVPVMAVDEVYVIENNSPLYDEVLAHRL 62
Query: 138 GLIPIIVDPRLFEYM----SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LIP + + Y EN T N CER ++ +
Sbjct: 63 ALIPFESNDAIDYYRRPEECENCTEN------------CERCFTKIYIDV---------- 100
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
S ++ Y+ ++D P PI DI I LG Q++ LEA
Sbjct: 101 ---------SAEETQKMVYSRDIKTED--PHVV--PISR--DIPIVLLGKNQKVSLEAKV 145
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
G GK HAK+ PV+ A R P++ + +++ EK V+ CP VF + D +
Sbjct: 146 RLGYGKEHAKFMPVSKAVSRYRPKVEV-----EKNCEKAVEVCPEGVFKLVD-----GKL 195
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
TV ACTLC ECL+ + + + + V +I +ES G L + EA K + K
Sbjct: 196 TVENELACTLCEECLK----YCQGIKVSAVPGEYILEVESVGTLDARRILIEATKSILSK 251
Query: 374 CE 375
E
Sbjct: 252 VE 253
>gi|387595515|gb|EIJ93139.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 297
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 139/292 (47%), Gaps = 57/292 (19%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ + + ID ++ NA RR +I+++PT+AI V I N +V+ DE+L+HRLGLIPII D
Sbjct: 46 LSYRINHIDPSVLNAMRRTIISDVPTVAIHWVYIRENETVMADEILSHRLGLIPIIADAE 105
Query: 148 LFEYMSEN------DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
FE + + +KN+I +L V+ LTV++N++K L
Sbjct: 106 DFERVVKTPELDPFTELTDKNSIQMEL-VITNNTDKILTVRSNDIKILSK---------- 154
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
+N I+ ++ I RL PG++IE A+ G G+ H
Sbjct: 155 ------------------------TNAAIKQ--NVIITRLVPGKKIECRLFAIIGTGREH 188
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
+KW P + +YR + ++ + + + + +K + D + +G+ A V + +
Sbjct: 189 SKWMPTSVCYYRTIKKLEMKDPSKAAEIQKYFR-------DGFSVRNGQ--AIVDEDKLL 239
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ +++ + I D F+F IE A SPET+ + ++I++DK
Sbjct: 240 V----NMDIEKKYPNEIKIHTESDSFLFEIEGITA-SPETILKKGIRIIKDK 286
>gi|340053034|emb|CCC47320.1| putative DNA-directed RNA polymerase II subunit 3 [Trypanosoma
vivax Y486]
Length = 337
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 132/304 (43%), Gaps = 47/304 (15%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+EF L +D + AN RR+++AE+P + E V I NTSV+ DE+LAHR+GL+P+
Sbjct: 19 LEFQLDEVDNSFANGLRRVMLAEVPVLGAESVTIIKNTSVLPDEMLAHRIGLVPLY---- 74
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + + F LC GG T L + L+ DS
Sbjct: 75 ----------SMKARKMPFPTDCLCGGGGCVECQVTGLLTVRCPADQHSLQVFTDSLKID 124
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
Y S + L + LG QE++L K I KTHAK+ PV
Sbjct: 125 DEEVYPVSSEERGLW---------------LLTLGRSQELDLRIVIRKSIAKTHAKFMPV 169
Query: 268 ATAWYRMLPEIVL----LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK-RATVAQPRACT 322
+T R +IV+ + + E ++L CP + GSG+ A P T
Sbjct: 170 STVAMRYATDIVINTEGMAKLTPEQRKQLACRCPDKAYKRN--GSGEAGHADDTGP--FT 225
Query: 323 LCRECLR----CGEEWEKRVSIR-----RVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
LCR+C+ G + V +R R +F FT+ESTG L + +A+ +L K
Sbjct: 226 LCRDCVASDQFSGMLDDTLVFVRPRRSKRGYYNFTFTVESTGVLPVLQILYDAIDVLRRK 285
Query: 374 CERV 377
ERV
Sbjct: 286 LERV 289
>gi|242398333|ref|YP_002993757.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
gi|242264726|gb|ACS89408.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
Length = 271
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 141/319 (44%), Gaps = 61/319 (19%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
L+ +++++ D + F L G+D A ANA RR +I E+PT AI++V N S
Sbjct: 5 LKTSFLVRKMQIKILEKRDDAIRFILEGMDIAFANALRRTIIGEVPTFAIDEVEFYENDS 64
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
+ DE++AHRL LIP+ FE S E T+ L E GP + V + +L
Sbjct: 65 ALFDEIIAHRLSLIPLTTPFDRFELES---MELEDYTVTLSL----EAEGPAI-VYSGDL 116
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
K +P KP NP +I I +L GQ
Sbjct: 117 K--------------SDDPDVKPV-----------------NP-----NIPIVKLAEGQR 140
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDAEKLVKTCPVNVFDI 303
+ A+A G GK HAKW P A Y+ L E+ + ++V ED K PV
Sbjct: 141 LVFNAYAKMGKGKDHAKWQP-GFAHYKYLTEVHVSKEVPKWEDIKKAAKKKKLPVE---- 195
Query: 304 EDIGSGKKRATVAQPRACTLCRECLR-CGEEWEKRVSIRRVKDHFIFTIESTGALSPETL 362
+ + R+ + RE + GE+ ++ V V + F+FT+ES G L E +
Sbjct: 196 ----ETENELIITTIRSFYIPREFEQYIGEKIKEEV----VPNTFVFTVESNGELPVEEM 247
Query: 363 FTEAVKILEDKCERVITEL 381
+ A+KIL K ++ I EL
Sbjct: 248 ISVALKILMRKSDKFINEL 266
>gi|40645083|dbj|BAD06460.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
gi|40645085|dbj|BAD06461.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
Length = 275
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 134/315 (42%), Gaps = 57/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L D+++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCADFCSECSVEFTLDVKCTDDQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+P P T Q E +I I +L GQE+
Sbjct: 122 --------------SSDPRVVPVTSRHRDEDQADYGETD--------EILIIKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P A + P+ ++
Sbjct: 160 KLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNIM--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
K +P +++E + + F F +ES+GAL PE + +
Sbjct: 193 ---KHTLYPKPDEWPKSEHTELDEDQYEAEFNWEAKPNKFFFNVESSGALKPENIVLMGI 249
Query: 368 KILEDKCERVITELS 382
+L++K + +L+
Sbjct: 250 VVLKNKLLNLQMQLA 264
>gi|327400272|ref|YP_004341111.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
gi|327315780|gb|AEA46396.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
Length = 261
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 138/300 (46%), Gaps = 60/300 (20%)
Query: 86 DDMEFDLIGI--DA--AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
+D EF + I DA A AN+FRR + + +PTMA++ V + NTS + DE+LAHR+GLIP
Sbjct: 7 EDSEFRAVFILRDAPIAFANSFRRAMKSLVPTMAVDYVDVYLNTSYLYDEILAHRIGLIP 66
Query: 142 IIVDPRLFEYMSENDTSNE---KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
+ + F E E + +L+V GP+L + +
Sbjct: 67 LKTNLEKFNMPDECSCGGEGCPNCQVSLRLNV----EGPKLVYSGDFV------------ 110
Query: 199 TKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIG 258
S P T +P + N P+ L GQ++ +EA A G G
Sbjct: 111 -------SDDPET----------VPVYDNIPV--------VELYKGQQLMIEAVARLGTG 145
Query: 259 KTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
K H+K+ PV+ Y+++P I + E V C NV + +D + V
Sbjct: 146 KEHSKYQPVSICAYKVIPRIEI--SGECNGCGDCVNACSRNVLEAKD-----GKIEVKNI 198
Query: 319 RACTLCRECLR-CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+C++C EC+ C EE + + D F+FT+E G+L T+ +A++IL+ K E +
Sbjct: 199 LSCSMCMECVNVCTEEA---IKVEDTND-FLFTVEGVGSLPVRTVMRKALEILKKKAEEM 254
>gi|124027415|ref|YP_001012735.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
gi|123978109|gb|ABM80390.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
Length = 281
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 137/306 (44%), Gaps = 44/306 (14%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L KD + L G + NA RR +++P MA++ V + N +V+ DE++AHRLGLI
Sbjct: 7 LDKDRLTIRLYVEGFGLPLVNAIRRAAYSDVPVMAVDVVEVFENNTVLYDEIIAHRLGLI 66
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P+ L +Y + E G P V L +ET
Sbjct: 67 PLTSKEALQKYKRPEECEK------------AELGDPSCYVVLR----------LEVETG 104
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGK 259
P S DL E S+ +RP+ D + I + P Q + L+A+A G G+
Sbjct: 105 PREE---------RIVYSGDL--ETSDPDVRPVYDNMPIVVMAPDQRLRLQAYARLGYGR 153
Query: 260 THAKWSPVATAWYRMLPEIVL-LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
HAKW PV+ A +R LP + L+++ DE + P I ++ SG V +
Sbjct: 154 EHAKWMPVSVAAHRYLPILEFNLDEMSDECIRCIESGYPELAAKIREMRSGS--IAVVED 211
Query: 319 RACTLCRECL--RCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
+ C+ RCG K V + FI IESTGAL PE + EA + + K E
Sbjct: 212 VNTSGLYWCVQRRCG---GKGVKLVYDDKRFILKIESTGALPPEDIVREAARAIVRKAEN 268
Query: 377 VITELS 382
++++L+
Sbjct: 269 LLSQLA 274
>gi|357630064|gb|EHJ78455.1| DNA-directed RNA polymerase II polypeptide [Danaus plexippus]
Length = 275
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 135/315 (42%), Gaps = 57/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT D+++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE
Sbjct: 3 YANQPSVHITELTDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + + D + ++ F L V C G V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCADFCTECSVEFTLDVKC-TGDQTRHVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+P P T Q E +I I +L GQE+
Sbjct: 122 --------------SSDPRVVPVTSRHRDEDQADYGELD--------EILIIKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P + + P+ ++
Sbjct: 160 KLRAYAKKGFGKEHAKWNPTSGVCFEYDPDNIM--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +P +++E + + F + +ES+GAL PE + +
Sbjct: 193 ---RHTLYPKPDEWPKSEHTELDEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 249
Query: 368 KILEDKCERVITELS 382
+L++K + +L+
Sbjct: 250 VVLKNKLLNLQVQLA 264
>gi|350400985|ref|XP_003486021.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
impatiens]
Length = 276
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 138/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + +Y + + + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD----------------------------- 189
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ + +P +++E + + + F +ES+GAL PE +
Sbjct: 190 -NSMRHTLFPKPDEWPKSEYSELEEDQYEAPFNWEAKPNKYYFNVESSGALKPENIVMMG 248
Query: 367 VKILEDKCERVITELS 382
+ L++K + T+LS
Sbjct: 249 IAALKNKLSNLQTQLS 264
>gi|367035840|ref|XP_003667202.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
gi|347014475|gb|AEO61957.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
Length = 337
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 139/309 (44%), Gaps = 58/309 (18%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V+++++ D ++F+L D + AN+ RR+++AE+PT+AI+ V I N+SV+ DE ++HR
Sbjct: 17 VVKISQADSVRVKFELQNADLSFANSLRRVMLAEIPTIAIDLVEIEENSSVLADEFISHR 76
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ VD L+ + D E ++ LH C G + V +L +P G
Sbjct: 77 LGLIPLNAEGVDNLLYARDCDCDGCCEHCSVRLTLHAKC-TGEENMHVFARDL--VPTGD 133
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ +Q L N+ L I +L PGQEI+LE A
Sbjct: 134 RI----------------------NQVLGTPIVND--AEGLGPLILKLRPGQEIKLECIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
KGI K HAKW+P A + P KL T D
Sbjct: 170 KKGIAKEHAKWAPSAAIGFEYDPH------------NKLRHT---------DYWYESDPK 208
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
P E + GE ++ V + F F +E+ GAL P+ + +E +K+L+ K
Sbjct: 209 AEWPPSEYAAWEEPPQEGEPFDYDA----VPNRFYFNVETAGALPPDVIVSEGIKVLQQK 264
Query: 374 CERVITELS 382
+I EL+
Sbjct: 265 LAGLIHELA 273
>gi|71535027|gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subunit [Medicago
sativa]
Length = 184
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 101/202 (50%), Gaps = 31/202 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV++ L D M+F+L DA++ANA RR++I+E+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 6 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 65
Query: 137 LGLIPIIVDPRLFEYMS------ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
LGLIP+ + + S + D E ++ F L V C +T +T L
Sbjct: 66 LGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKC------ITDQT-----LD 114
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+ + + P P S S I I +L GQE+ L
Sbjct: 115 VSSKDLISSDHTVTPVDVPGGDASVESDG--------------RGIIIVKLRRGQELRLR 160
Query: 251 AHAVKGIGKTHAKWSPVATAWY 272
A A KGIGK HAKWSP AT +
Sbjct: 161 AIARKGIGKDHAKWSPAATVTF 182
>gi|83286741|ref|XP_730293.1| conjugation stage-specific protein [Plasmodium yoelii yoelii 17XNL]
gi|23489977|gb|EAA21858.1| conjugation stage-specific protein, putative [Plasmodium yoelii
yoelii]
Length = 335
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 146/316 (46%), Gaps = 52/316 (16%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E+ ++K++MEF L ++A+ANA RRI+++E+PT+AI+ V + NTS DE +AHR+
Sbjct: 15 IEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 74
Query: 138 GLIPIIVDPRL-----FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
GLIPI D R F + + + T+ + + V C ++ V +++ L +
Sbjct: 75 GLIPI--DSRNIKNYEFRERCKCKETCSRCTVQYIIEVKCNNAN-KIDVSHYDIEALDHE 131
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEA 251
+P+ P+ N NN I M + I I L Q I ++
Sbjct: 132 PNIPMPI-PNDN---------------------KNNNIEKMENAIPILTLSKNQTIHMKL 169
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF---------- 301
A KGIGK HAKW P ++ ++ +++ + E + K K N
Sbjct: 170 TATKGIGKMHAKWIPANVSY--IIDHKIIINNHEVDKMSKEHKLLIANNLNSDCYILKEL 227
Query: 302 ----DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
D+E S +A+ CR+ L + V I + F F IES G++
Sbjct: 228 DDDRDVELRLSENMSVVMAES-----CRDTLNELGYNKDIVKIIYDETKFHFKIESVGSM 282
Query: 358 SPETLFTEAVKILEDK 373
PE + A++ILE+K
Sbjct: 283 PPEQIVEMAIEILENK 298
>gi|66517558|ref|XP_624836.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
mellifera]
gi|380029804|ref|XP_003698555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
florea]
Length = 276
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 142/316 (44%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + +Y + + + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
++L A+A KG GK HAKW+P A + P+ + +F D
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAMRH----------------TLFPKPDE 202
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ + + + +++E + + + F +ES+GAL PE +
Sbjct: 203 WPKSEYSELEE--------------DQYEAPFNWEAKPNKYYFNVESSGALKPENIVMMG 248
Query: 367 VKILEDKCERVITELS 382
+ L++K + T+LS
Sbjct: 249 IAALKNKLSNLQTQLS 264
>gi|332376707|gb|AEE63493.1| unknown [Dendroctonus ponderosae]
Length = 275
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 57/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RRILIAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHITDLTDENVKFYVEDTDLSVANSIRRILIAETPTLAIDWVKLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDP--RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + +Y + ++ ++ ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDEVVQRLQYPRDCICTDFCQECSVEFTLDVKCTDDQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS PR + S +D +N +I I +L GQE+
Sbjct: 122 ------------------SSDPRVIPAPSKHRD----DDSNDYGETDEILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
++ A+A KG GK HAKW+P + P+
Sbjct: 160 KIRAYAKKGFGKEHAKWNPTCGVAFEYDPD------------------------------ 189
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + +P +++E + + F + +E+ G L PE + V
Sbjct: 190 NAMRHTLFPKPDEWPKSEYTELDDDQYEAPFNWELKPNKFYYNVEAAGQLRPENIVIMGV 249
Query: 368 KILEDKCERVITELS 382
+L++K + T LS
Sbjct: 250 GMLKEKLSNLQTLLS 264
>gi|2829844|sp|P97760.1|RPB3_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|1850789|dbj|BAA12205.1| the third largest RNA polymerase II subunit [Mus musculus]
Length = 275
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 132/315 (41%), Gaps = 57/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+ K GK HAKW+P A + P+
Sbjct: 160 RLRAYVKKRSGKEHAKWNPTAGVAFEYDPD------------------------------ 189
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+G + +P +E + + F + +ES G+L PET+ A+
Sbjct: 190 NGLRHTVYPKPEEGPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIGLSAL 249
Query: 368 KILEDKCERVITELS 382
L+ K + T+LS
Sbjct: 250 SGLKKKLSDLQTQLS 264
>gi|383848177|ref|XP_003699728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Megachile rotundata]
Length = 276
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 138/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + +Y + + + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD----------------------------- 189
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ + +P +++E + + + F +ES+GAL PE +
Sbjct: 190 -NSMRHTLFPKPDEWPKSEYSELEEDQYEAPFNWEAKPNKYYFNVESSGALKPENIVMMG 248
Query: 367 VKILEDKCERVITELS 382
+ L++K + T+LS
Sbjct: 249 IAALKNKLSNLQTQLS 264
>gi|145328718|ref|NP_001077894.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|330251304|gb|AEC06398.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 235
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 121/235 (51%), Gaps = 35/235 (14%)
Query: 81 IRLTKDDM-EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR KDD +F+L D ++ANA RR++I+E+PTMAI V I N+SV+ DE +A RL L
Sbjct: 14 IRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSL 73
Query: 140 IPIIVDPRLFEYMSEN------DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
IP+ + + ++ D E ++ F L C L V + +L
Sbjct: 74 IPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKC-VTDQTLDVTSRDLY------ 126
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
++P+ P +TS SS+ D I IA+L GQE++L+A A
Sbjct: 127 --------SADPTVTPVDFTSNSSTSDSSEHKG---------IIIAKLRRGQELKLKALA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLED----VEDEDAEKLVKTCPVNVFDIE 304
KGIGK HAKWSP AT Y P+I++ E+ + DE+ L+++ P VF I+
Sbjct: 170 RKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGID 224
>gi|443691223|gb|ELT93136.1| hypothetical protein CAPTEDRAFT_155833 [Capitella teleta]
Length = 270
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 136/316 (43%), Gaps = 64/316 (20%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + T ++++F L D ++ANA RR+ IAE P +AI+ V I NT+V+ DE
Sbjct: 3 YANKPTVRITESTSENLKFILEDTDLSVANALRRVFIAETPIIAIDWVQINANTTVLCDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
LA R+GLIP+ D + + D + E + ++ F L V C R +V + +L
Sbjct: 63 FLAQRVGLIPLASDDVIDKMQYSRDCTCEEFCQECSVEFTLDVKCSDDQTR-SVTSADL- 120
Query: 188 WLPNGSE-LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
+ N SE +P+ +K DS K I I +L GQ+
Sbjct: 121 -ISNNSEVVPVTSKQDSTQEQK--------------------------GILIVKLRKGQD 153
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
++L+A+A KG K HAKW+P + P+ +L
Sbjct: 154 LKLKAYARKGFAKEHAKWNPTCGVAFEYDPDNIL-------------------------- 187
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ T +P +E++ + F F +E+ G+L PE + T
Sbjct: 188 ----RHTTYPRPEEWPRSEFSELSDDEYQGTYDPNGKPNKFFFNVEAVGSLMPEKIITSG 243
Query: 367 VKILEDKCERVITELS 382
+ +++ K + T+L+
Sbjct: 244 LSVMKKKLSDLQTQLA 259
>gi|156055988|ref|XP_001593918.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980]
gi|154703130|gb|EDO02869.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 335
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 141/331 (42%), Gaps = 83/331 (25%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+D + +V++ ++F+L +D + AN+ RR +++E+PT+AI++V I NTSV+
Sbjct: 8 MDQESSGPQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVL 67
Query: 129 QDEVLAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
DE +AHRLGLIP+ D ++ + D + E ++ LH C G + V +
Sbjct: 68 ADEFIAHRLGLIPLNSKNCDDVIYTRDCDCDGNCELCSVTLTLHARC-TGDEIMKVYARD 126
Query: 186 L--------KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT 237
L KW+ N P+ T PD L
Sbjct: 127 LVVDPQRANKWVGN----PVITDPDG------------------------------LGPV 152
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP 297
IA+L GQE+ ++ A+KGI K HAKW+P A + P L
Sbjct: 153 IAKLRKGQELRMKCIALKGIAKEHAKWAPTAAVGFEYDPHNKLKH--------------- 197
Query: 298 VNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK------RVSIRRVKDHFIFTI 351
++++ D ++ A +WE+ V ++F F +
Sbjct: 198 IDLWYEHDAAKEWPKSKYA----------------DWEEPPQEGAPFDYDAVPNNFYFEV 241
Query: 352 ESTGALSPETLFTEAVKILEDKCERVITELS 382
ES G L P+ + + +K+++ K V+ +L+
Sbjct: 242 ESIGNLEPDAIIQQGIKVMQQKLAAVLQDLT 272
>gi|74202237|dbj|BAE23500.1| unnamed protein product [Mus musculus]
Length = 332
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 27/217 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLGLIP+ D + + D + E + ++ F L V C R + +
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S ++D P N DI I +L GQE+
Sbjct: 122 ------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284
L A+A KG GK HAKW+P A P+ L V
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAXVALEYDPDNALRHTV 196
>gi|307202125|gb|EFN81625.1| DNA-directed RNA polymerase II subunit RPB3 [Harpegnathos saltator]
Length = 276
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 138/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEYTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + +Y + + + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD----------------------------- 189
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ + +P +++E + + + F +ES+GAL PE +
Sbjct: 190 -NSMRHTLFPKPDEWPKSEYSELEEDQYEAPFNWEAKPNKYYFNVESSGALKPENIVMMG 248
Query: 367 VKILEDKCERVITELS 382
+ L++K + T+LS
Sbjct: 249 IAALKNKLSNLQTQLS 264
>gi|389852940|ref|YP_006355174.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
gi|388250246|gb|AFK23099.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
Length = 259
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 59/308 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E++ D ++F L G+ A ANA RR ++AE+PT A+++V N S + DE++AHRL
Sbjct: 4 IEILEKRDDSIKFILKGVHVAFANALRRTILAEVPTFAVDEVEFYENDSALFDEIIAHRL 63
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
+IP+ FE + + T+ L E GP + V + +LK
Sbjct: 64 AMIPLTTPVDRFEL---DALELDDYTVTLSL----EAEGPGI-VYSGDLK---------- 105
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPML-DITIARLGPGQEIELEAHAVK 255
S++P +RP+ DI I +L GQ + A+A
Sbjct: 106 ----------------------------SDDPDVRPVTPDIPIVKLAKGQRLVFNAYAKL 137
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G GK HAKW P +Y+ +I + +++ E EKL K +E+ +K V
Sbjct: 138 GRGKDHAKWQP-GFVYYKYYTKIHISKEI--EGWEKLKKLAKKRGLPVEE---NEKEVIV 191
Query: 316 AQPRACTLCRECLRCGEEWE-KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
+ + +E EE+E K + V D ++FT+E+ G L E + + A+KIL K
Sbjct: 192 TTIKPFYIPKEF----EEYEGKEIWEEIVPDTYVFTVETNGELPVEEIVSIALKILMRKA 247
Query: 375 ERVITELS 382
+R I+EL
Sbjct: 248 DRFISELQ 255
>gi|50307587|ref|XP_453773.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642907|emb|CAH00869.1| KLLA0D16170p [Kluyveromyces lactis]
Length = 307
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 135/308 (43%), Gaps = 55/308 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D A+AN+ RR++I+E+PT+AI+ V I NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + +V+ CE R +V EL G
Sbjct: 67 LGLIPL--------------QSADIDQVVYCRDCYCEDHCDRCSV---ELILHAIG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
E++ +N +K TS DL +PI R + I +L GQEI ++ A
Sbjct: 106 -ESESTTNVYAKDLQITS-----DLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
KGI K HAKWSP A + P KL T D D K
Sbjct: 160 KKGISKEHAKWSPSAAIEFEYDP------------WNKLKHTDYWYEQDARDEWPQSKNC 207
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
P ++ R + F +ES G+++ E + +K L+DK
Sbjct: 208 EFEDP-------------PNEDEDFDYRAKPNTFYINVESVGSITSEQVVVRGIKTLQDK 254
Query: 374 CERVITEL 381
++ L
Sbjct: 255 VADILFSL 262
>gi|409096145|ref|ZP_11216169.1| DNA-directed RNA polymerase subunit D [Thermococcus zilligii AN1]
Length = 260
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 144/307 (46%), Gaps = 57/307 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E++ +D ++F L G+D A ANA RR ++AE+PT A+++V N S + DE++AHR
Sbjct: 4 KFEILEKREDSLKFILRGVDVAFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ Y + S E + L + E G V + +LK
Sbjct: 64 LAMIPLTTP-----YTRFSLDSLELDDYTVTLSLQAEGPG---VVYSGDLK--------- 106
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+P KP NP +I I +L GQ++ L A+A G
Sbjct: 107 -----SDDPEIKP-----------------ANP-----NIPIVKLAEGQKLALNAYARLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
GK HAKW P +Y+ L I + ++V E ++ ++L K + V + E K +
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTRIHVSKEVPEWKELKELAKKRGLPVEETE------KELVI 192
Query: 316 AQPRACTLCRECLRCGEEWE-KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
++ L R+ E +E +++ V + F+FT+ES G L + + A+KIL K
Sbjct: 193 ETTKSFYLPRKF----EAYEGEKIREEVVPNTFVFTVESNGELPVGEIVSTALKILMRKS 248
Query: 375 ERVITEL 381
+R I EL
Sbjct: 249 DRFINEL 255
>gi|324521335|gb|ADY47834.1| DNA-directed RNA polymerase II subunit RPB3 [Ascaris suum]
Length = 275
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 67/311 (21%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N RV + L + ++F L D ++AN+ RRI IAE+PTMAI+ V I NTSV+ DE
Sbjct: 3 YANQPRVTISMLNDEMVKFVLEDTDLSVANSLRRIFIAEVPTMAIDWVQIEANTSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSE---NDTSNEKNTIVFKLHVLCERGGPRLTVKTN 184
+AHR+GLIP+ +VD F+Y + ND E + +L V + G R +V T
Sbjct: 63 FIAHRMGLIPLTSNNVVDK--FQYSRDCQCNDFCPE-CAVEMRLSVRWDDEGTR-SVTTA 118
Query: 185 ELKWLPNGSELPLETKPDSNPSSKPRT--YTSFSSSQDLLPEFSNNPIRPMLDITIARLG 242
+L+ SN + P + +++D E DI I +L
Sbjct: 119 DLE--------------SSNAAVVPACGRHLQGRNAEDGTSE----------DILIVKLR 154
Query: 243 PGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFD 302
GQEI ++ +A KG GK HAKW+P + P+ L
Sbjct: 155 RGQEIRMKCYAKKGFGKEHAKWNPTCGVAFEYDPDNAL---------------------- 192
Query: 303 IEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETL 362
+ +A+P +E+E + F FT+ES+GAL E +
Sbjct: 193 --------RHTVLAKPEEWPKSEYSQLEEDEYEAPYDPMAKPNKFWFTVESSGALKAENI 244
Query: 363 FTEAVKILEDK 373
+ +L+ K
Sbjct: 245 VLSGINVLKKK 255
>gi|146304892|ref|YP_001192208.1| DNA-directed RNA polymerase D [Metallosphaera sedula DSM 5348]
gi|145703142|gb|ABP96284.1| DNA-directed RNA polymerase, subunit D [Metallosphaera sedula DSM
5348]
Length = 262
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 127/284 (44%), Gaps = 59/284 (20%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSEND--- 156
N+ RR + +P MA+++V + N S + DE+LAHRLGLIP L Y +
Sbjct: 25 VNSIRRASMLYVPVMAVDEVYVIENNSPLYDEMLAHRLGLIPFDSKDALDYYRRPEECIE 84
Query: 157 -TSNEKNTIVFKLHVLCERGGPR--LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
T N C+R + + VK + + + ++ E P+ P SK
Sbjct: 85 CTEN------------CDRCFTKAYIDVKAEDSQVMVYSRDIRTED-PNVTPISK----- 126
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
DI I LG Q++ LE G GK HAK++PV+ A R
Sbjct: 127 ---------------------DIPIVLLGKNQKVTLEMKMRLGYGKEHAKFNPVSLAILR 165
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEE 333
P++ + ++D EK V+ CP VF E+ GK + V ACTLC EC++ E
Sbjct: 166 YKPKVEV-----NKDCEKAVEVCPERVFSFEN---GKLK--VVNEMACTLCEECVKACE- 214
Query: 334 WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+++ + +I IES G+L P + EA K + K E +
Sbjct: 215 ---GINVSPEPNQYILEIESVGSLEPRRILIEATKSILSKIEEL 255
>gi|406698967|gb|EKD02188.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
8904]
Length = 378
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 13/212 (6%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N + V L +D+ F L G+D A AN+ RR ++A++PT+AI++V NTS I DE+L
Sbjct: 24 NQPNILVRNLNRDETTFHLSGVDMAYANSLRRTMMADVPTLAIDQVSFYQNTSPIPDEML 83
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
AHRLG++P+I + Y + D T+ K+ + G + V ++ L+
Sbjct: 84 AHRLGMVPLISRDVGKGLRYTRDCDCDEGCYYCMVTLRLKVSAVNREYGSPMAVTSDMLE 143
Query: 188 WLPNGS---ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
+P+ + + P PD + R + + +P +P I +AR+ G
Sbjct: 144 VIPSPNTPQQSPYGPPPDI--GEEERELIAHHDPELGVPVGKGDPT--ASPIQLARISRG 199
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QEIE+ A KGI K HAKWSP++ Y P
Sbjct: 200 QEIEVVCKAYKGIAKHHAKWSPLSAVAYEYDP 231
>gi|320166369|gb|EFW43268.1| polymerase II polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 270
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 101/196 (51%), Gaps = 31/196 (15%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
F + V+++ LT D++ F L + ++AN+ RR+ IAE+PTMAI+ V N+SV+ DE
Sbjct: 3 FASQPVVQILELTPDNVRFVLSKTELSVANSLRRVCIAEVPTMAIDLVQFDENSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRL-FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
+AHRLGL+P+ + F+Y++E D N L + E GP +V +L+
Sbjct: 63 FVAHRLGLLPLASETAGEFDYLAECDCDGGCNRCTVSLTL--EAEGP-CSVVARDLR--- 116
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
S+ S P + S S+ D+ + +LG GQ I+L
Sbjct: 117 -----------SSDESVVPISQRDASGSE-------------QHDVVLVKLGAGQRIKLT 152
Query: 251 AHAVKGIGKTHAKWSP 266
A A KGIGK HAKW+P
Sbjct: 153 AIAKKGIGKEHAKWNP 168
>gi|300681098|sp|P0CG28.1|RPOD_METAC RecName: Full=DNA-directed RNA polymerase subunit D
Length = 266
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 136/312 (43%), Gaps = 57/312 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
V+++ L+ +F L + A AN RR ++A++PT+AIE V + +NTSV+ DE LA
Sbjct: 3 MEVDILELSDRSAKFVLSNVSTAFANGIRRAMVADVPTLAIEYVNLYDNTSVLYDEQLAL 62
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RL LIP+ D + +E D + ++ + GP TV + +L
Sbjct: 63 RLSLIPLATDIETYLPQAECDVCGGEGCPACEVSLTLSAEGPG-TVYSRDLI-------- 113
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS P+ P P ++ I L GQ++ LEA A
Sbjct: 114 ----------SSDPKI----------------QPADP--NVPIVELKKGQKLVLEAIAHM 145
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA-EKLVKTCPVNVFDIEDIGSGKKRAT 314
G G+ KW Y+ +P I +E+ DA CP + +E+ G+
Sbjct: 146 GYGRDSVKWQAGVACGYKNMPVIT----IENCDACGHCAAECPKGIISVEEAGAKIAEED 201
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVK-----DHFIFTIESTGALSPETLFTEAVKI 369
+ + C++CR C E+ I +K + F+FT+ES G+ + + L A +
Sbjct: 202 IMK---CSICRLC-------EQVCDINAIKVDFYENSFVFTMESDGSYTAKDLVLNAANV 251
Query: 370 LEDKCERVITEL 381
++ K E ++ L
Sbjct: 252 IKGKAEEMLAIL 263
>gi|406859740|gb|EKD12803.1| RNA polymerase II subunit 3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 334
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 139/322 (43%), Gaps = 61/322 (18%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+Q+D + V++ + ++F+L +D A AN+ RR+++AE+PTMAI+ V I NTS
Sbjct: 6 MQMDTEASGPSVKITEAGANHVDFELENVDLAFANSLRRVIMAEVPTMAIDTVEIEANTS 65
Query: 127 VIQDEVLAHRLGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT 183
V+ DE LAHRLGL+P++ ++ + E ++ E ++V L C + V
Sbjct: 66 VLADEFLAHRLGLVPLVSKNIEDVNYTRDCECESYCELCSVVLSLQARC-TSEEIMKVYA 124
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIAR 240
+L PN + ++ NP+ L I +
Sbjct: 125 RDLVVDPNRAN-----------------------------QYVGNPVITDEDGLGTVICK 155
Query: 241 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNV 300
L GQE+ + A KGI K HAKW+PV+ + P L +A+ V+
Sbjct: 156 LRQGQELRMRCIAKKGIAKEHAKWAPVSAVAFEYDPNNKLRHTDLWYEADPAVEWPKSKY 215
Query: 301 FDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
D E E + GE ++ V F F +ES G L P+
Sbjct: 216 ADWE---------------------EPQQEGEPFDYDA----VPTKFYFEVESVGNLEPD 250
Query: 361 TLFTEAVKILEDKCERVITELS 382
+ + +K+++ K VI +L+
Sbjct: 251 AIIQQGIKVMQQKLASVIQDLT 272
>gi|307175611|gb|EFN65520.1| DNA-directed RNA polymerase II subunit RPB3 [Camponotus floridanus]
Length = 276
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 135/316 (42%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+ DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSN----EKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+G+IP+I D + D + ++ F L V C R V T + K
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQFTRDCQCMDFCPECSVEFTLDVKCIEDQTR-HVTTADFK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSS-QDLLPEFSNNPIRPMLDITIARLGPGQE 246
SS PR S +D E+ +I I +L GQE
Sbjct: 122 ------------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
++L A+A KG GK HAKW+P A + P+
Sbjct: 159 LKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD----------------------------- 189
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ + +P +++E + + + F +ES+GAL PE +
Sbjct: 190 -NAMRHTLYPKPDEWPKSEYTELEEDQYEAPFNWEAKPNKYYFNVESSGALKPENIVMMG 248
Query: 367 VKILEDKCERVITELS 382
+ L++K + T+LS
Sbjct: 249 IAALKNKLSNLQTQLS 264
>gi|225714130|gb|ACO12911.1| DNA-directed RNA polymerase II subunit RPB3 [Lepeophtheirus
salmonis]
Length = 279
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 139/316 (43%), Gaps = 58/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N + + LT+D ++F L D ++ANA RR++IAE P MAI+ V + +N++V+ DE
Sbjct: 3 YANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHRLG+IP+ D + D + + + F L V C R V + +LK
Sbjct: 63 FIAHRLGMIPLTSDDAVDSMQYSRDCTCTDFCRECAVEFTLDVKCHEETTR-NVTSADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SS P+ S +Q+ E + DI I +L GQE+
Sbjct: 122 ------------------SSDPKVIPVTSRNQE---EDGHEYGNENDDILIVKLRKGQEL 160
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
++ A+A KG K HAKW+P A + P+ L + + E P + + ++E+
Sbjct: 161 KVRAYAKKGFAKEHAKWNPTAGVSFEYDPDNALRHTLYPKPEE-----WPKSEYTELEED 215
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ A+P + F F E+ G+L PE +
Sbjct: 216 QTQAPYDYKAKP--------------------------NKFFFITEAAGSLKPENIVLMG 249
Query: 367 VKILEDKCERVITELS 382
V +L+ K + T+LS
Sbjct: 250 VAVLKKKLSDLQTQLS 265
>gi|218931178|ref|NP_001135345.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|209734758|gb|ACI68248.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223647266|gb|ACN10391.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223673145|gb|ACN12754.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 136/328 (41%), Gaps = 83/328 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D ++AN+ RR+ ++E+ T+AI+ + I N+SVI DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ +VD + D + ++ L V C R + L
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNHPRVIPVTSKSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD-------------HFIFTIEST 354
R TV PR EEW K +D F + +E+
Sbjct: 193 ----RHTVY-PRP-----------EEWPKSEYSEIEEDEVQAPFDPNGKPERFYYNVETC 236
Query: 355 GALSPETLFTEAVKILEDKCERVITELS 382
G+L PET+ A+ +L+ K + T+LS
Sbjct: 237 GSLRPETIVMSALAVLKKKLSDLQTQLS 264
>gi|154310335|ref|XP_001554499.1| RNA polymerase II subunit 3 [Botryotinia fuckeliana B05.10]
gi|347828820|emb|CCD44517.1| similar to DNA-directed RNA polymerase II subunit RPB3 [Botryotinia
fuckeliana]
Length = 336
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 141/331 (42%), Gaps = 83/331 (25%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+D + +V++ ++F+L +D + AN+ RR +++E+PT+AI++V I NTSV+
Sbjct: 8 MDQESSGPQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVL 67
Query: 129 QDEVLAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
DE +AHRLGLIP+ D ++ + + + E ++ LH C G + V +
Sbjct: 68 ADEFIAHRLGLIPLNSKNCDDVIYTRDCDCEGNCELCSVTLTLHARC-TGDEIMKVYARD 126
Query: 186 L--------KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT 237
L KW+ N P+ T PD L
Sbjct: 127 LVVDPQRANKWVGN----PVITDPDG------------------------------LGPV 152
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCP 297
IA+L GQE+ ++ A+KGI K HAKW+P A + P L
Sbjct: 153 IAKLRKGQELRMKCIALKGIAKEHAKWAPTAAVGFEYDPHNKLKH--------------- 197
Query: 298 VNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVS------IRRVKDHFIFTI 351
++++ D ++ A +WE+ V ++F F +
Sbjct: 198 IDLWYEHDAAKEWPKSKYA----------------DWEEPAQEGAPFDYDAVPNNFYFEV 241
Query: 352 ESTGALSPETLFTEAVKILEDKCERVITELS 382
ES G L P+ + + +K+++ K V+ +L+
Sbjct: 242 ESIGNLEPDAIIQQGIKVMQQKLAAVLQDLT 272
>gi|401889280|gb|EJT53216.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
2479]
Length = 378
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 13/212 (6%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N + V L +D+ F L G+D A AN+ RR ++A++PT+AI++V NTS I DE+L
Sbjct: 24 NQPNILVRNLNRDETTFHLSGVDMAYANSLRRTMMADVPTLAIDQVSFYQNTSPIPDEML 83
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELK 187
AHRLG++P+I + Y + D T+ K+ + G + V ++ L+
Sbjct: 84 AHRLGMVPLISRDVGKGLRYTRDCDCDEGCYYCMVTLRLKVSAVNREYGSPMAVTSDMLE 143
Query: 188 WLPNGS---ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
+P+ + + P PD + R + + +P +P I +AR+ G
Sbjct: 144 VIPSPNTPQQSPYGPPPDI--GEEERELIAHHDPELGVPVGKGDPT--ASPIQLARISRG 199
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QEIE+ A KGI K HAKWSP++ Y P
Sbjct: 200 QEIEVICKAYKGIAKHHAKWSPLSAVAYEYDP 231
>gi|225716034|gb|ACO13863.1| DNA-directed RNA polymerase II subunit RPB3 [Esox lucius]
Length = 275
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 136/328 (41%), Gaps = 83/328 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D ++AN+ RR+ ++E+ T+AI+ + I N+SVI DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ +VD + D + ++ L V C R + L
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNHPRVIPVTSKSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD-------------HFIFTIEST 354
R TV PR EEW K +D F + +E+
Sbjct: 193 ----RHTVY-PRP-----------EEWPKSEYSEIEEDEVQAPFDPNGKPERFYYNVETC 236
Query: 355 GALSPETLFTEAVKILEDKCERVITELS 382
G+L PET+ A+ +L+ K + T+LS
Sbjct: 237 GSLRPETIVMSALAVLKKKLSDLQTQLS 264
>gi|340372125|ref|XP_003384595.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Amphimedon queenslandica]
Length = 274
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 132/316 (41%), Gaps = 61/316 (19%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V+V +T ++++F + D ++ANA RRI IAE+PT+AI+ + + N++V+ DE
Sbjct: 3 YAKNPLVKVSEITDENVKFIIERTDLSMANALRRIFIAEVPTLAIDWIHLIANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+AHR+GL+P+ D + + + + C P +
Sbjct: 63 FIAHRIGLVPLTSDGTV-------------DKMQYSRECTCNDFCPMCAI---------- 99
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLP------EFSNNPIRPMLDITIARLGPGQ 245
E L+ K + + T SS+Q ++P E + DI I +L GQ
Sbjct: 100 --EYTLDVKCNDESTRAVTTRDLLSSNQSVIPVTSMVRESDTSDYGLTDDILIVKLRKGQ 157
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
E++L+A+A KG GK HAKWSP A + P+ L
Sbjct: 158 ELKLKAYATKGFGKEHAKWSPAAGISFEYDPDNAL------------------------- 192
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
+ T +P + E + F F +ES+G+L ET+
Sbjct: 193 -----RHTTYPKPEEWPKSEYSEIDESQPEAPFDFKSKPSKFFFNVESSGSLRAETIIMS 247
Query: 366 AVKILEDKCERVITEL 381
+ +L+ K + +L
Sbjct: 248 GLNVLKQKLSDLQIQL 263
>gi|410983639|ref|XP_003998146.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3, partial
[Felis catus]
Length = 260
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 133/302 (44%), Gaps = 59/302 (19%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE +AHRLGLIP+ D
Sbjct: 2 ENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSD 61
Query: 146 PRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
+ + D + E + ++ F L V C R + +
Sbjct: 62 DIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI--------------- 106
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
S+ PR S ++D P N DI I +L GQE+ L A+A KG GK H
Sbjct: 107 ----SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEH 158
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDIGSGKKRATVAQPRA 320
AKW+P A + P+ L V + E P + + ++++ S +P
Sbjct: 159 AKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSELDEDESQAPYDPNGKP-- 211
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
+ F + +ES G+L PET+ A+ L+ K + T+
Sbjct: 212 ------------------------ERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQ 247
Query: 381 LS 382
LS
Sbjct: 248 LS 249
>gi|225707818|gb|ACO09755.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Osmerus mordax]
Length = 275
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 135/315 (42%), Gaps = 57/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ L+ ++++F + D A+AN+ RR+ ++E+ T+AI+ + I N+SV+ DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ IVD + D + ++ L V C R + L
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNNPRVIPVTSRSRDNDP----NDYVEQDDIILVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ L VF +
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNALRH----------------TVFPRPEEW 203
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + + + +E E + F + +ES G+L PET+ A+
Sbjct: 204 PKSEYSEIEE--------------DEVEAPYDPNGKPERFYYNVESCGSLRPETIVMSAL 249
Query: 368 KILEDKCERVITELS 382
+L+ K + T+L
Sbjct: 250 AVLKKKLSDLQTQLG 264
>gi|367055384|ref|XP_003658070.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
gi|347005336|gb|AEO71734.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
Length = 337
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 138/309 (44%), Gaps = 58/309 (18%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++++++ D ++++L +D A AN+ RR+++AE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 16 MVKISQADSVRVKYELSNVDLAFANSLRRVMLAEIPTIAIDLVEIEENSSVLADEFIAHR 75
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ V L + D E ++ LH C G + V +L +P G
Sbjct: 76 LGLIPLNSEGVKDMLTSRECDCDGRCENCSVTLTLHAKC-TGEENMHVFARDL--VPTGE 132
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ ++ S ++ L P I +L PGQEI+LE A
Sbjct: 133 RI-----------NQVIGTPVLSDAEGLGP-------------LILKLRPGQEIKLECIA 168
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
KGI K HAKW+P A + P N D+ +
Sbjct: 169 KKGIAKEHAKWAPSAAIGFEYDPH---------------------NKLHHLDLWYEQDPK 207
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
P E + GE ++ V + F F +ES G+L P+ + E +++++ K
Sbjct: 208 AEWPPSEYAEWEEPPQEGEPFDYDA----VPNRFYFNVESAGSLPPDAIVIEGIQVIQQK 263
Query: 374 CERVITELS 382
+I ELS
Sbjct: 264 LASLIKELS 272
>gi|223477958|ref|YP_002582352.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
gi|214033184|gb|EEB74012.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
Length = 260
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 143/307 (46%), Gaps = 57/307 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E++ D ++F L G+D ANA RR ++AE+PT A+++V N S + DE++AHR
Sbjct: 4 KFEILERRGDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ E S + + T+ L GP + V + +LK G
Sbjct: 64 LAMIPLTTP---VERFSLDSLDLDDYTVTLSLQA----EGPGM-VYSGDLKSDDEG---- 111
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
KP +NP +I I +L GQ++ A+A G
Sbjct: 112 --VKP-ANP-----------------------------NIPIVKLAEGQKLTFNAYARLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED-EDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
GK HAKW P +Y+ L EI + ++V D E+ ++L + + V + ED +
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTEIHVSKEVPDWEELKELAERRGLPVEEKED------EIVI 192
Query: 316 AQPRACTLCRECLRCGEEWE-KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
+A L R+ EE+E ++ + F+FT+E+ G L E + + A+KIL K
Sbjct: 193 KTTKAFYLPRKF----EEYEGDKIREEIIPGAFVFTVETNGELPVEEIVSIALKILMRKS 248
Query: 375 ERVITEL 381
+R I EL
Sbjct: 249 DRFINEL 255
>gi|171689616|ref|XP_001909748.1| hypothetical protein [Podospora anserina S mat+]
gi|170944770|emb|CAP70881.1| unnamed protein product [Podospora anserina S mat+]
Length = 334
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 58/309 (18%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V+++++ D ++F+L D + AN+ RR+++AE+PT+AI+ V I +N+SV+ DE +AHR
Sbjct: 17 VVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAHR 76
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ V+ L+ + + E ++ LH C G ++V +L +P G
Sbjct: 77 LGLIPLNAEGVEHLLYSRDCDCEEYCENCSVKLTLHAKC-TGYENMSVSARDL--VPVGE 133
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ +Q L N+ + I +L P QEI+LE A
Sbjct: 134 RI----------------------NQSLGTPVIND--KDGTGPLILKLRPEQEIKLECIA 169
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
KGI K HAKW+P A + P N D+ K
Sbjct: 170 KKGIAKEHAKWAPSAAIGFEYDPH---------------------NKLRHLDLWYEKDPK 208
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ P E GE ++ V +HF + +E+ G L P+ + TE +K+++ K
Sbjct: 209 SEWPPSEYAKWEEPPVEGEPFD----FDAVPNHFYYNVETAGNLPPDGIVTEGIKVIQQK 264
Query: 374 CERVITELS 382
+I EL+
Sbjct: 265 LAGLIHELT 273
>gi|428184897|gb|EKX53751.1| hypothetical protein GUITHDRAFT_100722 [Guillardia theta CCMP2712]
Length = 319
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 150/334 (44%), Gaps = 66/334 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV L ++ F L D +IANA R+ +I+E+PT+AI+ V I N+SV+ DE +AHRL
Sbjct: 9 IEVNFLDDYNINFVLSNTDVSIANALRKAIISEVPTIAIDLVEIEENSSVLADEFIAHRL 68
Query: 138 GLIPII---------------VDPRLFEYMSENDTSNEKNT-IVFKLHVLCERGGP---R 178
GLIP++ V+ + ++ ++ S++K+ I F+L V P R
Sbjct: 69 GLIPLVSTRAMHADGPVPFRDVEGNITSFLWHHEASDDKDCEIKFELEVRNTEDNPMEVR 128
Query: 179 LTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITI 238
L + L+ L +G + KP Y PE+ + I
Sbjct: 129 L-ILIRLLEVLRHGGGV------------KPVEYD---------PEYP---------VVI 157
Query: 239 ARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDEDAEKLVK 294
A+L Q I+L A A KG+GK H+KWSP + ++ P + + +E + + + V+
Sbjct: 158 AKLKRNQAIKLTAIAKKGVGKMHSKWSPASGVYFTYEPVVTINYERMEGLSAQQRKTWVE 217
Query: 295 TCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC-----GEEWEKRVSIR------RV 343
CP + ++ +G+ EC + G ++ + I+
Sbjct: 218 ACPPGILRFNEM-TGQVEVEDEINNGIAFSGECEKVAKELFGYDFYDLIVIKPKSGSDGY 276
Query: 344 KDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
D F F +E+ GAL P TL A+ L K + +
Sbjct: 277 PDRFNFFVETNGALDPVTLVRAAIWELVRKVQNI 310
>gi|336477128|ref|YP_004616269.1| RNA polymerase insert [Methanosalsum zhilinae DSM 4017]
gi|335930509|gb|AEH61050.1| RNA polymerase insert [Methanosalsum zhilinae DSM 4017]
Length = 264
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 132/300 (44%), Gaps = 51/300 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+++++ L++ F L A AN RR ++A++PT+AI++V + NNTSV+ DE L
Sbjct: 3 MKIDILELSERTASFVLSDASVAFANGIRRAMLADVPTLAIDEVNVYNNTSVLYDEQLGL 62
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RL LIP+ + + +Y+ +++ + E +L + GP++ + + P
Sbjct: 63 RLALIPLTAN--MDDYIPKDECNCEDVCPACELSLTLSVEGPKMVYSGDFVSADP----- 115
Query: 196 PLETKP-DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
E +P DSN I I L GQ++ +EA A
Sbjct: 116 --EVRPADSN-------------------------------IPIIDLKEGQKLFIEALAH 142
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G GK HAKW Y+ P IV + + ++ CP + +G +
Sbjct: 143 AGYGKEHAKWQAGVGCGYKNYP-IVSFTNC--DQCGTCIEECPKEII---KMGPAGAEIS 196
Query: 315 VAQPRACTLCRECLR-CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
CTLC+ C CG VS+ + + FIF +ES G+ + E L A K++ K
Sbjct: 197 SEDLLKCTLCKTCAEACG---INAVSVNQSESSFIFNMESDGSYTSEELIINAGKVIRKK 253
>gi|449546952|gb|EMD37921.1| hypothetical protein CERSUDRAFT_50160 [Ceriporiopsis subvermispora
B]
Length = 283
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 19/205 (9%)
Query: 81 IRLTKDD-MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGL 139
IR K D + F L +D A+AN+FRR+++A+LPT+AI+ V I NT+V+ DE +AHRLG+
Sbjct: 13 IRDQKSDRVNFVLENVDLAVANSFRRVMMADLPTIAIDLVEIETNTTVLPDEFIAHRLGM 72
Query: 140 IPII---VDPRLFEYMSENDTSN-EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
+P+ D + TSN E ++ L+V C + + +N L+ +P G +
Sbjct: 73 VPLASKNCDEAMRYTRDCTCTSNCEYCSVTLSLNVACGEDATTMDITSNHLEVIPGGGQG 132
Query: 196 PLETKPDSNP----SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
D+ S +P+ + P ++P P + + ++ GQE++L+
Sbjct: 133 GYWDAGDAEGGEELSKRPKNFGH--------PVGKDDPNVP--PVLLCKIRKGQELKLKC 182
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLP 276
A KG K HAKWSP + + P
Sbjct: 183 IAKKGTAKEHAKWSPCSAVAFEYDP 207
>gi|114051193|ref|NP_001040388.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
gi|95102714|gb|ABF51298.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
Length = 275
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 135/315 (42%), Gaps = 57/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L+ ++++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE
Sbjct: 3 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
LAHR+GLIP+I D + + D + ++ F L V C R V T +LK
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTR-HVTTADLK 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+P P T Q E +I I +L GQE+
Sbjct: 122 --------------SSDPRVVPVTSRHRDEDQADYGEAD--------EILIIKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L A+A KG GK HAKW+P A + P+ ++
Sbjct: 160 KLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +P +++E + + F + +ES+GAL PE + +
Sbjct: 193 ---RHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGI 249
Query: 368 KILEDKCERVITELS 382
+L++K + +L+
Sbjct: 250 VVLKNKLLNLQVQLA 264
>gi|242247264|ref|NP_001156090.1| DNA-directed RNA polymerase II polypeptide-like [Acyrthosiphon
pisum]
gi|239789163|dbj|BAH71223.1| ACYPI001769 [Acyrthosiphon pisum]
Length = 273
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 137/316 (43%), Gaps = 59/316 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT D ++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+A R+GLIP+ D + +Y + S+ ++ F LHV C R V T +L
Sbjct: 63 FIASRIGLIPLTSDEIVDRLQYSRDCTCSDFCHDCSVEFNLHVKCSEEMTR-HVTTADL- 120
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDL-LPEFSNNPIRPMLDITIARLGPGQE 246
S+ PR S +QD + E+ DI I +L GQE
Sbjct: 121 -----------------VSNNPRVVPVTSRNQDSDINEYGEKD-----DILIIKLRKGQE 158
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
+++ A A KG GK HAKW+P + P+ T +F D
Sbjct: 159 LKIRAFAKKGFGKEHAKWNPTTGVSFEYDPD----------------NTMRHTLFPKPDE 202
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ + + + ++ E + R + F F +ES G+L PE +
Sbjct: 203 WPKSEYSELNE--------------DQHEGLYNWRAKPNKFFFNVESCGSLKPENIVLMG 248
Query: 367 VKILEDKCERVITELS 382
V L++K + T+ +
Sbjct: 249 VAALKNKLSNLQTQFT 264
>gi|212223251|ref|YP_002306487.1| DNA-directed RNA polymerase subunit D [Thermococcus onnurineus NA1]
gi|212008208|gb|ACJ15590.1| DNA-directed RNA polymerase, subunit D [Thermococcus onnurineus
NA1]
Length = 260
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 61/309 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ ++ +D ++F + GID ANA RR ++AE+PT A+++V N S + DE++AHR
Sbjct: 4 KFRILEKREDSIKFIVEGIDIPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ E S + + T+ L E GP + V + +LK G
Sbjct: 64 LAMIPLTTP---VERFSLDALELDDYTVTLSL----EAEGPGM-VYSGDLKSDDEG---- 111
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
KP +NP +I I +L GQ + L A+A G
Sbjct: 112 --VKP-ANP-----------------------------NIPIVKLAEGQNLTLNAYAKLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLV---KTCPVNVFDIEDIGSGKKRA 313
GK HAKW P +Y+ L +I + +DV D + K + + PV D E +
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTKIHVSKDVPDWEELKALAEKRGLPVEETDEELV------- 191
Query: 314 TVAQPRACTLCRECLRCGEEWE-KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ +A L R+ E +E ++ V + F+FT+ES G L E + T A+KIL
Sbjct: 192 -ITTTKAFYLPRKF----EPYEGDKIREEVVPNTFVFTVESNGELPVEEIVTIALKILMR 246
Query: 373 KCERVITEL 381
K +R I+EL
Sbjct: 247 KSDRFISEL 255
>gi|353235564|emb|CCA67575.1| related to RPB3-DNA-directed RNA polymerase II chain
[Piriformospora indica DSM 11827]
Length = 336
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 100/213 (46%), Gaps = 32/213 (15%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N V + L +D F L G++ AN+FRR ++A++PT+AI+ V+ NT+V+ DE +A
Sbjct: 2 NPNVRIRELQRDKCNFVLSGVNLGFANSFRRTMMADIPTVAIDMVVFEVNTTVLPDEFIA 61
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNT----IVFKLHVLCERGGPRLTVKTNELK--- 187
HRLG+IP+I D E +V LHV C+ G + + ++ L+
Sbjct: 62 HRLGMIPLISTNCDEGMRYTRDCDCELGCPLCMVVLTLHVRCDMPGTTMNITSDHLQIQS 121
Query: 188 ----WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
W G EL + P SK R F+ +P I IA L
Sbjct: 122 GGDAW--GGEELTKRGEDFGLPVSKSRG-------------FNGHP------ILIASLRK 160
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
GQE+++ A KGI K HAKWSP + P
Sbjct: 161 GQELKIRCEAKKGIAKDHAKWSPCTALGFEYDP 193
>gi|340719719|ref|XP_003398295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
terrestris]
Length = 273
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 134/305 (43%), Gaps = 59/305 (19%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
LT+++++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE LAHR+G+IP+
Sbjct: 11 LTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGMIPL 70
Query: 143 IVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
I D + +Y + + + ++ F L V C R V T + K
Sbjct: 71 ISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTR-HVTTADFK----------- 118
Query: 199 TKPDSNPSSKPRTYTSFS-SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
SS PR S +D E+ +I I +L GQE++L A+A KG
Sbjct: 119 -------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQELKLRAYAKKGF 166
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
GK HAKW+P A + P+ + + +
Sbjct: 167 GKEHAKWNPTAGVSFEYDPD------------------------------NSMRHTLFPK 196
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
P +++E + + + F +ES+GAL PE + + L++K +
Sbjct: 197 PDEWPKSEYSELEEDQYEAPFNWEAKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNL 256
Query: 378 ITELS 382
T+LS
Sbjct: 257 QTQLS 261
>gi|320586301|gb|EFW98980.1| RNA polymerase 2 subunit 3 [Grosmannia clavigera kw1407]
Length = 362
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 144/321 (44%), Gaps = 82/321 (25%)
Query: 80 VIRLTKDDME---FDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+++++ D+E F+L +D AIAN+ RR++IAE+PT+AI+ V + +NTSV+ DE +AHR
Sbjct: 17 AVKISQADVERVKFELTNVDLAIANSLRRVIIAEVPTIAIDIVEVEDNTSVLADEFIAHR 76
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGL+P+ S + +V+ CE+ ++K L
Sbjct: 77 LGLVPL--------------NSKNADDVVYSRDCDCEQYCELCSIK------------LR 110
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP-------------MLDITIARLGP 243
L+ K S+ K ++DL+ + P RP L + IA+L
Sbjct: 111 LQAKCTSDEVMK-------VYARDLVVD----PARPNQWVGTPVIRDPDGLGVMIAKLRR 159
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVF 301
GQE+ + A KGI K HAKWSP A + P L ++ ++DA+K
Sbjct: 160 GQELNMTCIAKKGIAKEHAKWSPTAAVGFEYDPHNKLHHMDMWYEQDADK---------- 209
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
E S R E + GE ++ + R F + +ES G + P+
Sbjct: 210 --EWPKSDNAR-----------LEEPAQEGEPFDYDATPGR----FYYDVESIGQMEPDA 252
Query: 362 LFTEAVKILEDKCERVITELS 382
+ +K L+ K +I EL+
Sbjct: 253 IVQNGIKTLQQKLAALIHELT 273
>gi|209730678|gb|ACI66208.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 135/328 (41%), Gaps = 83/328 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT ++++F + D ++AN+ RR+ ++E+ T+AI+ + I N+SVI DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ +VD + D + ++ L C R + L
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLDARCTEDQTRHVTSRDLL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI + +L GQE+
Sbjct: 122 ------------------SNHPRVIPVTSKSRDNDP----NDYVEQDDILLVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
L A+A KG GK HAKW+P A + P+ L
Sbjct: 160 RLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNAL--------------------------- 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD-------------HFIFTIEST 354
R TV PR EEW K +D F + +E+
Sbjct: 193 ----RHTV-YPRP-----------EEWPKSEYSEIEEDEVQAPFDPNGKPERFYYNVETC 236
Query: 355 GALSPETLFTEAVKILEDKCERVITELS 382
G+L PET+ A+ +L+ K + T+LS
Sbjct: 237 GSLRPETIVMSALAVLKKKLSDLQTQLS 264
>gi|315229895|ref|YP_004070331.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
gi|315182923|gb|ADT83108.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
Length = 258
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 142/309 (45%), Gaps = 61/309 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+++V+ +D + F L G+DAA ANA RR++I E+PT A+++V N S + DE++AHR
Sbjct: 2 KIKVLEKREDAIRFILEGVDAAFANALRRVIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ FE + ++ T+ L E GP + V + +LK
Sbjct: 62 LAMIPLTTPYDRFEL---DALELDEYTVTLSL----EAEGPGV-VYSGDLK--------- 104
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+P KP T P +I I +L GQ++ L A+A G
Sbjct: 105 -----SDDPDVKPVT-----------P-----------NIPIVKLAEGQKLTLNAYAKLG 137
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
GK HAKW P A+Y+ L EI + ++V E + P ++
Sbjct: 138 RGKDHAKWQP-GFAYYKYLTEIHVSKEVPEWEKIKKLAKKRKLPTE--------ETEEEL 188
Query: 314 TVAQPRACTLCRECLR-CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ A L RE + G ++ + V D F+FT+ES G L E + + A+KIL
Sbjct: 189 VIKTITAFYLPREFEQYIGTLIKEEI----VPDTFVFTVESNGELPVEEIVSIALKILMR 244
Query: 373 KCERVITEL 381
K ++ I EL
Sbjct: 245 KSDKFINEL 253
>gi|427778887|gb|JAA54895.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 250
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 128/324 (39%), Gaps = 100/324 (30%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+AHRLGLIP+ D + + + + C +LK
Sbjct: 63 FIAHRLGLIPLTSDEIV-------------DKMQYSRDCTC--------ADFXDLK---- 97
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS PR S +D E+ DI I +L GQE++ A
Sbjct: 98 --------------SSDPRVVPVTSRHKDDTNEYGETE-----DILIVKLRKGQEVKARA 138
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
+A KG GK HAKW+P + P+ N F +
Sbjct: 139 YAKKGFGKEHAKWNPTCGVAFEYDPD---------------------NAF---------R 168
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH-------------FIFTIESTGALS 358
T +P EEW K +DH F + +ES+GAL
Sbjct: 169 HTTYPRP-------------EEWPKSEYTELDEDHAEAEFQSEGKPNKFYYNVESSGALK 215
Query: 359 PETLFTEAVKILEDKCERVITELS 382
PE + + +L+ K + T+LS
Sbjct: 216 PENIVLSGLSVLKKKLSDLQTQLS 239
>gi|342180433|emb|CCC89910.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 392
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 129/308 (41%), Gaps = 56/308 (18%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ + F L +D + AN RR+L+AE+P +A+ V I NTSV+ DE++AHR+GL+P+
Sbjct: 77 ETLVFQLDEVDNSFANGLRRVLLAEVPVLAVVSVTIVQNTSVLPDEMIAHRIGLVPLY-- 134
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
S + + LC G T E+K L+ DS
Sbjct: 135 ------------SMKAREMQLAGDCLCGGLGCIKCQITGEMKVRCPSDRHSLQVFTDSLK 182
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
+ Y S + + + LG QE++L K I K HAK+
Sbjct: 183 IDDEQVYPVSSEER---------------GVWLLTLGRSQELDLRILIRKSIAKAHAKFM 227
Query: 266 PVATAWYRMLPEIVLLEDV----EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP--- 318
PV+T R PE+VL EDV E E + ++ C + R T Q
Sbjct: 228 PVSTVSMRYAPEVVLNEDVISSLEPEQRRQWLECC-----------KHRARRTDGQTEEF 276
Query: 319 RACTLCRECL----RCGEEWEKRVSIRRVKD-----HFIFTIESTGALSPETLFTEAVKI 369
LC ECL E V +R +D +F FT+ESTG L + +A+ +
Sbjct: 277 NITNLCVECLLKEPSVTAFTEPLVLVRPKRDQRGYYYFTFTVESTGVLPVLQMMYDAIDV 336
Query: 370 LEDKCERV 377
L K ERV
Sbjct: 337 LRKKLERV 344
>gi|73667627|ref|YP_303642.1| DNA-directed RNA polymerase subunit D [Methanosarcina barkeri str.
Fusaro]
gi|72394789|gb|AAZ69062.1| DNA-directed RNA polymerase, subunit D [Methanosarcina barkeri str.
Fusaro]
Length = 266
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 136/313 (43%), Gaps = 57/313 (18%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
V+++ L+ +F L + + AN RR +IA++PT+AIE V + NTSV+ DE LA
Sbjct: 2 TMEVDILELSDRSAKFVLSKVSTSFANGIRRAMIADVPTLAIEYVNLYENTSVLYDEQLA 61
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
RL LIP++ D + +E D + ++ + GP TV + +L
Sbjct: 62 LRLSLIPLVTDVETYVPQAECDVCGGEGCPACEVSLTLSAEGP-CTVYSRDL-------- 112
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS P+ P P +I I L GQ++ LEA A
Sbjct: 113 ----------ISSDPKI----------------QPADP--NIPIVELKKGQKLVLEALAH 144
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA-EKLVKTCPVNVFDIEDIGSGKKRA 313
G G+ KW Y+ +P I +E+ DA CP + E+ G+
Sbjct: 145 MGYGRDSVKWQAGVACGYKNVPVIT----IENCDACGHCAAECPKGIIRFEESGAKVSSE 200
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVK-----DHFIFTIESTGALSPETLFTEAVK 368
V + C+LC+ C E+ I +K + F+FT+ES G+ + + L A
Sbjct: 201 DVLK---CSLCKLC-------EQVCDIHAIKIGFDENAFVFTMESDGSYTAKDLALNASN 250
Query: 369 ILEDKCERVITEL 381
+++ K E +++ L
Sbjct: 251 VIKGKAEELLSIL 263
>gi|330834009|ref|YP_004408737.1| DNA-directed RNA polymerase subunit D [Metallosphaera cuprina Ar-4]
gi|329566148|gb|AEB94253.1| DNA-directed RNA polymerase, subunit D [Metallosphaera cuprina
Ar-4]
Length = 262
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 121/285 (42%), Gaps = 49/285 (17%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRL-FEYM 152
G NA RR + +P MA+++V I N S + DEVLAHRLGLIP L F
Sbjct: 19 GYPLEFVNAVRRASMIYVPVMAVDEVYIVENNSPLYDEVLAHRLGLIPFDSREALDFYRR 78
Query: 153 SENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTY 212
E +N CE+ + ++ S S+ Y
Sbjct: 79 PEECIDCAEN---------CEKCFTKAYIEV-------------------SAEESQVMVY 110
Query: 213 TSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 272
+ ++D N I DI I LG Q+I LE G GK HAK++PV A
Sbjct: 111 SKDIRTED------PNVIPISKDIPIVLLGKKQKISLEMRMRLGYGKEHAKFNPVTMAIV 164
Query: 273 RMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGE 332
R P++ + + + EK + CP VF E+ V ACTLC EC++
Sbjct: 165 RYKPKVKV-----NSNCEKAAEVCPYKVFSYEN-----NELKVENELACTLCEECVK--- 211
Query: 333 EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
+ +++ D ++ +ES G+L P + EA K + +K E +
Sbjct: 212 -FCPGITVEPEPDKYVLELESVGSLDPRRILIEATKSILNKVEEL 255
>gi|290559364|gb|EFD92697.1| RNA polymerase insert [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 247
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 138/304 (45%), Gaps = 63/304 (20%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+VE++ K + + L G A+ANA RR +I + T+AI+ V I NTS + DEVLA
Sbjct: 1 MKVELLE-EKTETKLLLNGCSVAMANAIRRAIINGVYTLAIDDVTIYKNTSSMFDEVLAA 59
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIPI + K + KL + GP+ V ++L
Sbjct: 60 RLGLIPIKTPIEV----------KGKGKFLLKLKEM----GPK-AVHASDL--------- 95
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS +D++P I ML I L G+ +ELEA
Sbjct: 96 -------------------VSSDKDVVP-----AIPEML---IINLKDGESLELEAETTW 128
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G G H K++P A +Y P+I + + + A K+ CPV++ D + K +
Sbjct: 129 GNGAIHTKFTP-AHVYYHFYPKITI-PNSSVKGAAKIASLCPVDILDGQKDSLSVKSGKL 186
Query: 316 AQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
++ C LC+ C E++ +SI KD +F IES G LS + +F EA+ LE++
Sbjct: 187 SE---CILCKAC----EDYAGSDVISISSEKDKIVFGIESWGQLSVKDIFNEAISTLEEE 239
Query: 374 CERV 377
+ +
Sbjct: 240 VKEI 243
>gi|119872211|ref|YP_930218.1| RNA polymerase, insert [Pyrobaculum islandicum DSM 4184]
gi|166229321|sp|A1RSE3.1|RPOD_PYRIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|119673619|gb|ABL87875.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum islandicum DSM
4184]
Length = 262
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 128/296 (43%), Gaps = 71/296 (23%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G ++ N+ RR++I+ELP MAI+ V+I +NTSV+ DE+LAHRLGL+P+ + +
Sbjct: 20 GAYPSLVNSIRRVIISELPVMAIDYVVIVSNTSVMYDEMLAHRLGLVPLTTPLQALPPIE 79
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+ CE G L + SE + N S Y+
Sbjct: 80 D-----------------CETG-------------LVDPSECTVRLMLQINAESDKIVYS 109
Query: 214 S--FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
S D++P + DI I +L GQ I LEA+A G K HAKW A A
Sbjct: 110 GDLVSERPDVVPVYK--------DIPIVKLVKGQSIILEAYAKLGRAKEHAKWQ-AALAS 160
Query: 272 YRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL-----CRE 326
Y P I +L++ E+ + + K + P CT CR+
Sbjct: 161 YYYYPRIKVLDEKCKEECKDICK-------------------ELTNPFECTFNKAWTCRD 201
Query: 327 CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
CG+ R+ + + ++F +ES G ET EA +IL+ K IT L+
Sbjct: 202 I--CGD----RLIVEWDRYKYVFWVESFGNYDVETALREAFRILKKKFSDFITTLT 251
>gi|429216770|ref|YP_007174760.1| DNA-directed RNA polymerase subunit alpha [Caldisphaera lagunensis
DSM 15908]
gi|429133299|gb|AFZ70311.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Caldisphaera lagunensis DSM 15908]
Length = 280
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 135/315 (42%), Gaps = 56/315 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V+++ + + L G A NA RR++++++PTMA++ V +N + + DE++AHRL
Sbjct: 5 VDILDFNNNRITVYLEGFPIAFGNALRRLVLSDVPTMAVDYVYFYDNDTSVYDEIIAHRL 64
Query: 138 GLIPIIVDPRLFEY--------MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
GL+ + D + +Y SE DT+ ++ K L G + VK ++LK
Sbjct: 65 GLLVLKSDDAIHKYGLPENCAGKSETDTNCYTQIVLEK--ELSNDSGSGIYVKASDLK-- 120
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIE 248
FS+ I+P D I L PGQ I
Sbjct: 121 -----------------------------------FSDASIKPAYPDTPIVYLAPGQRIH 145
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
L A+A G GK H KWSP + + + + L D+ E A C V+ + E S
Sbjct: 146 LVAYARLGRGKEHGKWSPASAS----VLQYTTLVDINGEKATDECIEC-VSYYK-EVANS 199
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETLFTEA 366
K R + LR EE + + +R + T+ES G+L P+ + EA
Sbjct: 200 LKARENTTIEYKTNINTSGLRYCEESSCKDIIKVRYDSSRLLLTVESNGSLEPQQIILEA 259
Query: 367 VKILEDKCERVITEL 381
L+ + E ++ ++
Sbjct: 260 SNSLDRRVEELLEKI 274
>gi|367000601|ref|XP_003685036.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
gi|357523333|emb|CCE62602.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
Length = 310
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F + +D A+ANAFRR++IAE+PT+AI+ V + +NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFIVSNVDLAMANAFRRVMIAEIPTLAIDSVEVISNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGL+P+ D EY + + +K ++V L L
Sbjct: 67 LGLVPLQSADIEQLEYSRDCFCEDHCDKCSVVLTLQALG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S DLL +PI + + I +L GQE++
Sbjct: 106 ----ESESTTNVYSKDLVIVS-----DLLGRNIGHPIIQDKEGNGVLICKLRKGQELKFT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CIAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|21228260|ref|NP_634182.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Go1]
gi|23822085|sp|Q8PV16.1|RPOD_METMA RecName: Full=DNA-directed RNA polymerase subunit D
gi|20906717|gb|AAM31854.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Go1]
Length = 266
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 136/312 (43%), Gaps = 57/312 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
V+++ L+ +F L + A AN RR +IA++PT+AIE V + +NTSV+ DE LA
Sbjct: 3 MEVDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLAL 62
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RL LIP++ D + +E + + ++ + GP TV + +L
Sbjct: 63 RLSLIPLVTDIETYMPQAECEVCGGEGCPACEVSLTLSAEGPG-TVYSRDLI-------- 113
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS P+ P P +I I L GQ++ LEA A
Sbjct: 114 ----------SSDPKI----------------QPADP--NIPIVELKKGQKLVLEAIAHM 145
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA-EKLVKTCPVNVFDIEDIGSGKKRAT 314
G G+ KW Y+ +P I +E+ DA CP + +E+ G+ R
Sbjct: 146 GYGRDSVKWQAGVACGYKNVPVIT----IENCDACGHCAAECPKGIIRVEEAGA---RIA 198
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVK-----DHFIFTIESTGALSPETLFTEAVKI 369
C+LCR C E+ I +K + F+FT+ES G+ + + L A +
Sbjct: 199 EDDLIKCSLCRLC-------EQVCDINAIKVDFYENAFVFTMESDGSYTAKDLTINAANV 251
Query: 370 LEDKCERVITEL 381
++ K E ++ L
Sbjct: 252 IKGKAEELLAIL 263
>gi|363752075|ref|XP_003646254.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889889|gb|AET39437.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
Length = 311
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D ++AN+ RRI+IAE+PT+AI+ V I NTSV+ DE ++HR
Sbjct: 7 QVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIETNTSVLADEFISHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + +V+ CE R +V L G
Sbjct: 67 LGLIPL--------------QSKDIDQLVYCRDCYCEDHCDRCSVV---LTLQAVG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
E++ +N +K S DL + +PI + I + +L GQE+ L+ A
Sbjct: 106 -ESESTTNVYAKDLQIVS-----DLGGKNIGHPIIQDKEANGILVCKLRKGQELRLKCVA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKWSP A + P
Sbjct: 160 KKGISKEHAKWSPAAAIEFEYDP 182
>gi|341582027|ref|YP_004762519.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
gi|340809685|gb|AEK72842.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
Length = 260
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 67/312 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ +++ +D ++F + G+D ANA RR ++A++PT A+++V N S + DE++AHR
Sbjct: 4 KFQILEKREDSIKFIVEGVDVPFANALRRTILADVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
+G+IP+ F S + ++ T+ L E GP + V + +LK
Sbjct: 64 VGMIPLTTPHERF---SLDSLELDEYTVTLSL----EAEGPGM-VYSGDLK--------- 106
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
SS + + P NP +I I +L GQ + A+A G
Sbjct: 107 -------------------SSDEGVKP---ANP-----NIPIVKLAEGQRLTFNAYAKLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED-----EDAEKLVKTCPVNVFDIEDIGSGKK 311
GK HAKW P +Y+ L I + ++V D E AE+ + P D E +
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTRIHVSKEVPDWKELKELAER--RGLPAEETDGELV----- 191
Query: 312 RATVAQPRACTLCREC-LRCGEE-WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ +A L R+ GE+ WE+ V + F+FT+E+ G L E + T A+KI
Sbjct: 192 ---ITTIKAFYLPRKFDAYVGEKIWEETVP-----NAFVFTVETNGELPVEEIVTIALKI 243
Query: 370 LEDKCERVITEL 381
L K +R I+EL
Sbjct: 244 LMRKSDRFISEL 255
>gi|430812471|emb|CCJ30120.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 289
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 139/312 (44%), Gaps = 72/312 (23%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V + + K+ ++F L +D A AN+ RR+++AE+PT+AI+ V I NTSV+ DE + HR
Sbjct: 8 QVTIRNIEKNSIDFVLSNVDLAFANSLRRVILAEVPTVAIDLVEIEINTSVLADEFITHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LG+IP+ D++N + +V+ C++ + +V +L
Sbjct: 68 LGMIPL-------------DSANVDDKLVYTRDCDCDQYCTKCSV------------QLT 102
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP-MLDITIARLGPGQEIELEAHAVK 255
L K S+ T S+DL+ E N+ I P I I +L QE+ L+ A K
Sbjct: 103 LYAKCTSDG-------TMDVYSKDLIVEH-NSTIDPDGKGILICKLRKAQELRLKCIAKK 154
Query: 256 GIGKTHAKWSPVATA------WYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
GI K HAKWSPV+ W ++ E+ D + K + D E+
Sbjct: 155 GIAKEHAKWSPVSAIAFEYDPWNKLHHTDYWFEESSDAEWPKSKNS------DWEEAPRD 208
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ A+P F F IE+ G+L+P + ++ +K
Sbjct: 209 EAFDYTAEPS--------------------------KFYFCIETVGSLTPNEVISQGIKY 242
Query: 370 LEDKCERVITEL 381
L+ K ++ +L
Sbjct: 243 LQVKLATIVRDL 254
>gi|57641438|ref|YP_183916.1| DNA-directed RNA polymerase subunit D [Thermococcus kodakarensis
KOD1]
gi|73917880|sp|Q5JJF4.1|RPOD_PYRKO RecName: Full=DNA-directed RNA polymerase subunit D
gi|57159762|dbj|BAD85692.1| DNA-directed RNA polymerase, subunit D [Thermococcus kodakarensis
KOD1]
Length = 259
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 137/299 (45%), Gaps = 59/299 (19%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
D ++F + G+D ANA RR +++E+PT A+++V N S + DE++AHRL +IP+
Sbjct: 12 DSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLAMIPLTTP 71
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
E S + + T+ L E GP + V + +LK
Sbjct: 72 ---HERFSLDALELDDYTVTLSL----EAEGPGM-VYSGDLK------------------ 105
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
SS D+ P NP +I I +L GQ + A+A G GK HAKW
Sbjct: 106 ----------SSDGDVKP---ANP-----NIPIVKLAEGQRLTFNAYARLGRGKDHAKWQ 147
Query: 266 PVATAWYRMLPEIVLLEDVED-EDAEKLV--KTCPVNVFDIEDIGSGKKRATVAQPRACT 322
P +Y+ L +I + +DV D E+ ++L + PV D E + + +A
Sbjct: 148 P-GFVYYKYLTKIHVSKDVPDWEELKELAERRGLPVEESDEEIV--------ITTIKAFY 198
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
L R + E K + V F+FT+E+ G L E + + A+KIL K +R I EL
Sbjct: 199 LPR---KFEEHMGKGIREEIVPGSFVFTVETNGELPVEEIVSIALKILMRKSDRFINEL 254
>gi|328768461|gb|EGF78507.1| hypothetical protein BATDEDRAFT_20338 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 130/299 (43%), Gaps = 72/299 (24%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ F L D ++ANA RR +IAE+PT+AI+ V +N+SV+ DE LAHRLGLIP+
Sbjct: 27 VSFILGNTDLSVANALRRTMIAEVPTVAIDLVEFESNSSVLTDEFLAHRLGLIPL----- 81
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + TI + C + P+ +V EL L + D
Sbjct: 82 ---------NSEQVGTITYTRDCSCTQYCPQCSV------------ELHLNVRCDEE--- 117
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPML------DITIARLGPGQEIELEAHAVKGIGKTH 261
+T +S+DL+ S++ I P++ I IA+L GQEI L A KG K H
Sbjct: 118 ----FTREVTSRDLIS--SHSSIMPIIHGDDDSGIMIAKLRKGQEINLRCIAKKGTAKEH 171
Query: 262 AKWSPVATAWYRMLPEIVLLED---VEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
AKWSP A + P L VED+ + PV+ +G V
Sbjct: 172 AKWSPCAGIAFEYDPHNRLRHTTYWVEDD----IKSEWPVS-------ANGLLEPEVVD- 219
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
++ D F T+E TGA+ P+ + T A++I++ K V
Sbjct: 220 ----------------DEPFDFNAKPDKFYMTVEGTGAIDPKEIVTTALRIMQTKLSLV 262
>gi|45187753|ref|NP_983976.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|44982514|gb|AAS51800.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|374107190|gb|AEY96098.1| FADL120Cp [Ashbya gossypii FDAG1]
Length = 311
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D ++AN+ RRI+IAE+PT+AI+ V I +NTSV+ DE ++HR
Sbjct: 7 QVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGL+P+ S + + +V+ CE R +V L G
Sbjct: 67 LGLVPL--------------QSKDIDQLVYCRDCFCEDHCDRCSVL---LTLHAVG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
E++ +N +K S DL + +PI + + I +L GQE+ L+ A
Sbjct: 106 -ESESTTNVYAKDLQIVS-----DLGGKNIGHPIIQDKEANGVLICKLRKGQELRLKCVA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKWSP A + P
Sbjct: 160 KKGIAKEHAKWSPAAAIEFEYDP 182
>gi|427778021|gb|JAA54462.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 324
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 145/359 (40%), Gaps = 96/359 (26%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSN------------EKNTIVFKLHVLCERGG--P 177
+AHRLGLIP+ D + + D + E N+ V + R G P
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADXXXXIDWVQLEANSTVLHDEFIAHRLGLIP 122
Query: 178 RLTVK-TNELKWLPNGS----------ELPLETK----------PDSNPSSKPRTYTSFS 216
+ + +++++ + + E L+ K SS PR S
Sbjct: 123 LTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVKCLDEQTRHVTTADLKSSDPRVVPVTS 182
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+D E+ DI I +L GQE++ A+A KG GK HAKW+P + P
Sbjct: 183 RHKDDTNEYGETE-----DILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTCGVAFEYDP 237
Query: 277 EIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK 336
+ N F + T +P EEW K
Sbjct: 238 D---------------------NAF---------RHTTYPRP-------------EEWPK 254
Query: 337 RVSIRRVKDH-------------FIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+DH F + +ES+GAL PE + + +L+ K + T+LS
Sbjct: 255 SEYTELDEDHAEAEFQSEGKPNKFYYNVESSGALKPENIVLSGLSVLKKKLSDLQTQLS 313
>gi|390960760|ref|YP_006424594.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
gi|390519068|gb|AFL94800.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
Length = 260
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 140/305 (45%), Gaps = 53/305 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ +++ +D ++F + GID ANA RR ++AE+PT A+++V N S + DE++AHR
Sbjct: 4 KFQILEKREDSIKFIVEGIDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ F S + + T+ L E GP + V + +L+
Sbjct: 64 LAMIPLTTPAERF---SLDALELDDYTVTLSL----EAEGPGM-VYSGDLR--------- 106
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
S+ + KP NP DI I +L GQ + A+A G
Sbjct: 107 -----SSDEAIKP-----------------ANP-----DIPIVKLAEGQRLTFNAYARLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
GK HAKW P +Y+ L I + ++V D E+L + +E+ G + +
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTRIHVSKEV--PDWEELKELAERRGLPVEETG---EELIIT 193
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
+A L R+ G E +K + V F+FT+E+ G L E + A+KIL K +R
Sbjct: 194 TIKAFYLPRKF--EGYEGDK-IREEVVPGAFVFTVETNGELPVEEIVATALKILMRKSDR 250
Query: 377 VITEL 381
I EL
Sbjct: 251 FINEL 255
>gi|365992198|ref|XP_003672927.1| hypothetical protein NDAI_0L02000 [Naumovozyma dairenensis CBS 421]
gi|410730081|ref|XP_003671218.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
gi|401780038|emb|CCD25975.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
Length = 311
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L ID A+AN+FRR++IAE+PT+AI+ V I NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFILSNIDLALANSFRRVMIAEIPTLAIDSVQIETNTTVLADEFIAHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + + CE + +V L G
Sbjct: 67 LGLIPL--------------QSTDIEQLEYSRDCFCEDHCDKCSVV---LTLQAFG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
E++ +N +K S +LL +PI + + I +L GQE++L A
Sbjct: 106 -ESESTTNVYAKDLVIVS-----NLLGRNIGHPIIQDKENNGVLICKLRKGQELKLTCVA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW P A + P
Sbjct: 160 KKGIAKEHAKWGPAAAIEFEYDP 182
>gi|449268851|gb|EMC79688.1| DNA-directed RNA polymerase II subunit RPB3, partial [Columba
livia]
Length = 248
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 124/289 (42%), Gaps = 59/289 (20%)
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI----IVDPRLFEYMSE 154
+AN+ RR+ IAE+P +AI+ V I N+SV+ DE +AHRLGLIP+ IVD +
Sbjct: 3 VANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCT 62
Query: 155 NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTS 214
D + ++ F L V C R + + S+ PR
Sbjct: 63 CDEFCPECSVEFTLDVRCNEDQTRHVTSRDLI-------------------SNNPRVIPV 103
Query: 215 FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
S S+D P N DI I +L GQE+ L A+A KG GK HAKW+P A +
Sbjct: 104 TSRSRDNDP----NDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEY 159
Query: 275 LPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDIGSGKKRATVAQPRACTLCRECLRCGEE 333
P+ L V + E P + + +I++ + +P
Sbjct: 160 DPDNALRHTVYPKPEE-----WPKSEYSEIDEEDAQAPYDPNGKP--------------- 199
Query: 334 WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F + +ES G+L PET+ A+ L+ K + T+LS
Sbjct: 200 -----------ERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLS 237
>gi|255714803|ref|XP_002553683.1| KLTH0E04598p [Lachancea thermotolerans]
gi|238935065|emb|CAR23246.1| KLTH0E04598p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D +AN+ RR++IAE+PT+AI+ V + NTSV+ DE ++HR
Sbjct: 7 QVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S++ N +++ CE R +V L G
Sbjct: 67 LGLIPL--------------QSSDINDLIYCRDCYCEDHCDRCSVV---LTLQAVG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD---ITIARLGPGQEIELEAHA 253
E++ +N +K S +L+ +PI D + I +L GQE++L+ A
Sbjct: 106 -ESESTTNVYAKDLVIVS-----NLMGRNIGHPIIQDKDGNGVLICKLRKGQELKLKCVA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKWSP A + P
Sbjct: 160 KKGISKEHAKWSPAAAIEFEYDP 182
>gi|378754855|gb|EHY64883.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Nematocida sp.
1 ERTm2]
Length = 271
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 59/314 (18%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+D + V + D + F + I+A++ NA RR +I++ P++A+ V I N +V+
Sbjct: 1 MDEYLARIEVRKVADGPDTLSFRVNQIEASVLNALRRTIISDTPSIAVHWVYIRENETVM 60
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSN------EKNTIVFKLHVLCERGGPR-LTV 181
DE+L+HRLGLIPI+ D + + ++ + ++N+I +L+V E + LTV
Sbjct: 61 ADEILSHRLGLIPILADSSTLKNIVRSEVLDPLAELTDENSIKMELNV--ENTTDKVLTV 118
Query: 182 KTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARL 241
++N++K + N T T+ ++ I RL
Sbjct: 119 RSNDIKIVSN-------------------TKTTLKQ-----------------NVIITRL 142
Query: 242 GPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF 301
PG+ IE + AV G G+ HAKW P + +YR + ++ + + + + +K + + F
Sbjct: 143 APGKRIECKMLAVVGTGREHAKWMPTSVCYYRSIKKLEMKDISKAMEIQKYFR----DGF 198
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
IE+ GK + + R + + + + +R D F F IE+ A SP++
Sbjct: 199 AIEN---GK--PVIDEDRLLV----NMDIEKNYPNEIKVRAEPDSFFFEIEAI-ANSPKS 248
Query: 362 LFTEAVKILEDKCE 375
+ + + IL++K +
Sbjct: 249 ILKKGLGILKNKLK 262
>gi|366993697|ref|XP_003676613.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
gi|342302480|emb|CCC70253.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
Length = 318
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D A+AN+FRR++IAE+PT+AI+ V I NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFILSNVDLALANSFRRVMIAEIPTLAIDSVQIETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSLDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N +K S +LL +PI R + I +L GQE+++
Sbjct: 106 ----ESESTTNVYAKDLVIVS-----NLLGRNIGHPIIQDREGNGVLICKLRKGQELKIT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CIAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|390367669|ref|XP_003731306.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Strongylocentrotus purpuratus]
Length = 262
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 125/291 (42%), Gaps = 63/291 (21%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
++AN+ RR ++AE+PT+AI+ V I N+SV+ DE ++HR+GLIP+ D +
Sbjct: 16 SVANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVV--------- 66
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+ + F CE +V EL L+ K + + + SS
Sbjct: 67 ----DKLNFNRDCGCEEFCSDCSV------------ELSLDVKCTDDQTRHVTSRDLLSS 110
Query: 218 SQDLLPEFSNNP----IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
+Q ++P S N + DI I +L GQE+ L A+A KG GK HAKW P A +
Sbjct: 111 NQKVVPVPSRNQESSDYGEVDDILIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAAIAFE 170
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFD--IEDIGSGKKRATVAQPRACTLCRECLRCG 331
P+ ++ V + E P + F ED GK
Sbjct: 171 YDPDNIMRHTVYPKPEE-----WPKSEFTEVDEDTAQGKFDGDA---------------- 209
Query: 332 EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
V + F F +ES GAL+PE + + +L+ K + T+ S
Sbjct: 210 -----------VPNKFFFNVESIGALTPENIVFSGLSVLKKKLSDLQTQHS 249
>gi|321259555|ref|XP_003194498.1| RNA polymerase II subunit 3 [Cryptococcus gattii WM276]
gi|317460969|gb|ADV22711.1| RNA polymerase II subunit 3, putative [Cryptococcus gattii WM276]
Length = 377
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 106/211 (50%), Gaps = 10/211 (4%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N R+ + L + D F L G++ A AN+ RR+++A++PT+AI++VL NTS + DE++
Sbjct: 23 NQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFTQNTSPLADEMI 82
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNEKNTIVFKLHVLCERGGP------RLTVKTNE 185
AHRLGLIP+I + Y + D + L + G R+T E
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVTFSGNDGEQFMRVTSDMLE 142
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ P G P P S + R + + LP NP P I IA++G GQ
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGLPCGKGNPSIP--PILIAKMGKGQ 200
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
EI++ A KGI K HAKWSP++T + P
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|393246178|gb|EJD53687.1| insert subdomain of RNA polymerase alpha subunit [Auricularia
delicata TFB-10046 SS5]
Length = 380
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 15/208 (7%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
N ++E +R +D ++F L +D A AN+ RR+++A+LPT+AI+ V I +NT V+ DE+LA
Sbjct: 6 NVKIEDLR--RDRVKFTLENVDLAFANSLRRVMMADLPTVAIDMVEIESNTGVLVDELLA 63
Query: 135 HRLGLIPIIV----DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
HRLG+IP++ + + +S + +L V C L V +N L+ +P
Sbjct: 64 HRLGMIPLVSTNCDEAMRYTRDCNCLSSCSSCAVQLELKVSCNTDNRTLDVTSNHLEVVP 123
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIEL 249
S + + R +F P ++P + P+L IA+L GQE++L
Sbjct: 124 MDSYDNFDMGGPATGEELSRRVENFGH-----PVGKHDPSVAPVL---IAKLRKGQELKL 175
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPE 277
A KG+ K HAKWSP A + P
Sbjct: 176 RCIAKKGVAKEHAKWSPCAAVSFEYDPH 203
>gi|291242309|ref|XP_002741050.1| PREDICTED: DNA directed RNA polymerase II polypeptide C-like
[Saccoglossus kowalevskii]
Length = 275
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 130/315 (41%), Gaps = 57/315 (18%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + L+ D+++F + D ++ANA RR+ IAE+ T+AI+ + I N+SV+ DE
Sbjct: 3 YANQPSVRLSELSDDNVKFSVEDTDLSVANALRRVFIAEVATIAIDWIQIEANSSVLHDE 62
Query: 132 VLAHRLGLIPI----IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
++HR+GLIP+ +VD + D + ++ F L V C R + +
Sbjct: 63 FISHRVGLIPLTSDEVVDRMQYSRDCTCDEFCPECSVDFMLDVKCTDDQTRHVTSRDLMT 122
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SNP P T D ++ +N DI I +L GQE+
Sbjct: 123 ---------------SNPRVVPVTS---RHRDDEAGDYGDND-----DILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+L+A+ KG K HAKW+P A + P+ N F
Sbjct: 160 KLKAYGRKGFAKEHAKWNPTAGVSFEYDPD---------------------NTF------ 192
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ +P ++++ + F +ES GAL PE + +
Sbjct: 193 ---RHTVYPKPEEWPKSEYSELDDDQYQAPYDAMGKPNKFYLNVESCGALRPENIVLSGL 249
Query: 368 KILEDKCERVITELS 382
+L+ K + T+ S
Sbjct: 250 AVLKKKLSDLQTQHS 264
>gi|410670316|ref|YP_006922687.1| DNA-directed RNA polymerase subunit D [Methanolobus psychrophilus
R15]
gi|409169444|gb|AFV23319.1| DNA-directed RNA polymerase subunit D [Methanolobus psychrophilus
R15]
Length = 265
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 131/305 (42%), Gaps = 52/305 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
V+++ +++ +F L + AA AN RR ++++PT+AI V I NNTSV+ DE L
Sbjct: 3 MEVDILEMSERSAKFVLSDVSAAFANGIRRAALSDVPTLAITYVNIYNNTSVLFDEQLGL 62
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RL LIP+ + F + E + GSE
Sbjct: 63 RLALIPLAANIEEFVPVEE---------------------------------CICGGSEC 89
Query: 196 PLETKPDSNPSSKPRTYTS---FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
P + + PR S SS + + P +N PI L GQ++ LEA
Sbjct: 90 PACRVSLTLSAEGPRMVYSGDFVSSDETVQPAEANIPI--------IELKEGQKVVLEAI 141
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A G G HA+W Y+ +P +V + A VK CP + + G+G
Sbjct: 142 AHMGYGNQHARWQAGVACGYKNMP-VVTFNKCDSCGA--CVKECPQGIITMGPEGAGISE 198
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ + C LC+ C E +++ + + F+FT+ES G+ + + L A K ++D
Sbjct: 199 DDILK---CILCKLCQGICE--IDAITVSQDERAFVFTMESDGSYTIQQLIINAGKSIKD 253
Query: 373 KCERV 377
K R+
Sbjct: 254 KATRM 258
>gi|14520746|ref|NP_126221.1| DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
gi|13124531|sp|Q9V198.1|RPOD_PYRAB RecName: Full=DNA-directed RNA polymerase subunit D
gi|5457962|emb|CAB49452.1| rpoD DNA-directed RNA polymerase, subunit D [Pyrococcus abyssi GE5]
gi|380741285|tpe|CCE69919.1| TPA: DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
Length = 259
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 139/307 (45%), Gaps = 57/307 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+++++ T D + F L G+D A ANA RR ++ E+PT A+++V N S + DE++AHRL
Sbjct: 4 IKILKKTDDSITFILEGVDVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 63
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
+IP+ FE + + T+ L E GP + V + +LK
Sbjct: 64 AMIPLKTPVDRFEL---DALELDDYTVTLSL----EAEGPGI-VYSGDLK---------- 105
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
PD P+ NP DI I +L GQ + A A G
Sbjct: 106 SDDPDVKPA---------------------NP-----DIPIVKLAKGQRLVFNAFAKLGR 139
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVED-EDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
GK HAKW P T +Y+ I + +++E E +KL K + V + E+ V
Sbjct: 140 GKDHAKWQPGFT-YYKYFTRIHISKEIEGWEKLKKLAKKRGLPVKENEN------EVIVE 192
Query: 317 QPRACTLCRECLRCGEEWE-KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
+ + +E EE+E K + V + ++F +E+ G L E + A+KIL K +
Sbjct: 193 TIKPFYIPKEF----EEYEGKGIWEEIVPNTYVFVVETNGELPVEEIVKIALKILMRKAD 248
Query: 376 RVITELS 382
R I EL
Sbjct: 249 RFINELQ 255
>gi|452210696|ref|YP_007490810.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Tuc01]
gi|452100598|gb|AGF97538.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Tuc01]
Length = 258
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 132/304 (43%), Gaps = 57/304 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
V+++ L+ +F L + A AN RR +IA++PT+AIE V + +NTSV+ DE LA
Sbjct: 3 MEVDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLAL 62
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RL LIP++ D + +E + + ++ + GP TV + +L
Sbjct: 63 RLSLIPLVTDIETYMPQAECEVCGGEGCPACEVSLTLSAEGPG-TVYSRDLI-------- 113
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS P+ P P +I I L GQ++ LEA A
Sbjct: 114 ----------SSDPKI----------------QPADP--NIPIVELKKGQKLVLEAIAHM 145
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA-EKLVKTCPVNVFDIEDIGSGKKRAT 314
G G+ KW Y+ +P I +E+ DA CP + +E+ G+ R
Sbjct: 146 GYGRDSVKWQAGVACGYKNVPVIT----IENCDACGHCAAECPKGIIRVEEAGA---RIA 198
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVK-----DHFIFTIESTGALSPETLFTEAVKI 369
C+LCR C E+ I +K + F+FT+ES G+ + + L A +
Sbjct: 199 EDDLIKCSLCRLC-------EQVCDINAIKVDFYENAFVFTMESDGSYTAKDLTINAANV 251
Query: 370 LEDK 373
++ K
Sbjct: 252 IKGK 255
>gi|240104023|ref|YP_002960332.1| DNA-directed RNA polymerase subunit D [Thermococcus gammatolerans
EJ3]
gi|239911577|gb|ACS34468.1| DNA-directed RNA polymerase subunit D (rpoD) [Thermococcus
gammatolerans EJ3]
Length = 260
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 140/309 (45%), Gaps = 61/309 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ E+ +D ++F L G+D ANA RR ++AE+PT A+++V N S + DE++AHR
Sbjct: 4 KFEIFERREDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAHR 63
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ E S + + T+ L GP + V + +LK G
Sbjct: 64 LAMIPLTTP---VERFSLDALELDDYTVTLSLQA----EGPGM-VYSGDLKSDDEG---- 111
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
KP +NP +I I +L GQ++ A+A G
Sbjct: 112 --VKP-ANP-----------------------------NIPIVKLAEGQKLTFNAYAKLG 139
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED-EDAEKLV--KTCPVNVFDIEDIGSGKKRA 313
GK HAKW P +Y+ L EI + ++V D E+ ++L + PV K
Sbjct: 140 RGKDHAKWQP-GFVYYKYLTEIHVSKEVPDWEELKELAERRGLPVE--------EKKDEI 190
Query: 314 TVAQPRACTLCRECLRCGEEWE-KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ +A L R+ E +E ++ + F+FT+E+ G L E + + A+KIL
Sbjct: 191 IIKTIKAFYLPRKF----EAYEGDKIREEIIPGAFVFTVETNGELPVEEIVSIALKILMR 246
Query: 373 KCERVITEL 381
K +R I EL
Sbjct: 247 KSDRFINEL 255
>gi|298674771|ref|YP_003726521.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287759|gb|ADI73725.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 265
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 133/299 (44%), Gaps = 48/299 (16%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+V+++ L++ F L A AN+ RR ++A++PT AI+ + I NNTSV+ DE L
Sbjct: 3 MKVDMLELSERSARFVLSNTTPAFANSIRRAMLADVPTFAIDDLNIYNNTSVLYDEQLGL 62
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RL LIP+ + + +Y ++++ + E+ ++ + GP++ V + +L
Sbjct: 63 RLALIPLATE-NIDDYTTQDECTCEEGCPSCEVSITLSAEGPKM-VYSGDL--------- 111
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + P +N P I L Q + LEA A K
Sbjct: 112 -------------------ISSDPGIQPADTNIP--------IIELKEDQRVVLEALAHK 144
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL-VKTCPVNVFDIEDIGSGKKRAT 314
G+GK +AKW Y+ LP I V + D L V CP + +++ G+
Sbjct: 145 GLGKDNAKWQAGVACGYKNLPLI----RVNNCDKCGLCVSECPKGIIYLDEEGAKVADEN 200
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ C LC E +S++ + F+FT+ES G+ S + L A ++ K
Sbjct: 201 LMDCILCKLCEEACEI-----DAISVKEDESSFLFTVESDGSYSSQQLIINAGNTIKAK 254
>gi|326927174|ref|XP_003209769.1| PREDICTED: ubiquinone biosynthesis protein COQ9, mitochondrial-like
[Meleagris gallopavo]
Length = 549
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 124/288 (43%), Gaps = 59/288 (20%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI----IVDPRLFEYMSEN 155
AN+ RR+ IAE+P +AI+ V I N+SV+ DE +AHRLGLIP+ IVD +
Sbjct: 305 ANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCTC 364
Query: 156 DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSF 215
D + ++ F L V C R + + S+ PR
Sbjct: 365 DEFCPECSVEFTLDVRCNEDQTRHVTSRDLI-------------------SNNPRVIPVT 405
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
S S+D P N DI I +L GQE++L A+A KG GK HAKW+P A +
Sbjct: 406 SRSRDNDP----NDYVEQDDILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYD 461
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDIGSGKKRATVAQPRACTLCRECLRCGEEW 334
P+ L V + E P + + +I++ + +P
Sbjct: 462 PDNALRHTVYPKPEE-----WPKSEYSEIDEEDAQAPYDPNGKP---------------- 500
Query: 335 EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F + +ES G+L PET+ A+ L+ K + T+LS
Sbjct: 501 ----------ERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLS 538
>gi|296090458|emb|CBI40277.3| unnamed protein product [Vitis vinifera]
Length = 206
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Query: 215 FSSSQDLLP-EFSNNPIRPMLD---ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
SS ++P +FS++ D I I +L GQE+ L A A KGIGK HAKWSP AT
Sbjct: 14 ISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 73
Query: 271 WYRMLPEIVLLEDVED----EDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRE 326
+ PEI + ED+ + E+ V++ P VFDI+ + ++ VA A T E
Sbjct: 74 TFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDID---ASSQQVVVADAEAYTYDDE 130
Query: 327 CLRCGEEWEK--RVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
L+ E K V I +D FIFT+ESTGA+ L A+ +L+ K + V
Sbjct: 131 VLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAV 183
>gi|269986616|gb|EEZ92898.1| RNA polymerase insert [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 248
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 132/304 (43%), Gaps = 62/304 (20%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ E++ + + L ++ NA RR +I + T+ IE V I NTS + DE+LA
Sbjct: 1 MKAEIVETKDNTAKILLEDFKVSMVNALRRSIINGVNTLTIEDVKIYKNTSFMYDEILAS 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIPI L K FKL + GP+ V ++L
Sbjct: 61 RLGLIPIKTPIEL----------KGKGKFSFKLKEM----GPK-AVHASDL--------- 96
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
S +D++P S D+ I L G+ I+LEA
Sbjct: 97 -------------------VPSDKDVVPAIS--------DMLIINLKDGEAIDLEAETAW 129
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G G H+K++P A +Y P+I + + + + A K+ CPV++ D E K+ +
Sbjct: 130 GNGADHSKFTP-AHVFYHFYPKITI-PNSKVKGAAKIASLCPVDILDGEKDTLSVKKGKL 187
Query: 316 AQPRACTLCRECLRCGEEWEKR--VSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ C LC+ C E++ +SI D IF IES G LS + + EAV LE++
Sbjct: 188 SD---CILCKAC----EDYAGSDVISISSQNDKMIFEIESWGQLSVKEILNEAVSTLEEE 240
Query: 374 CERV 377
+ +
Sbjct: 241 VKEI 244
>gi|435852104|ref|YP_007313690.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanomethylovorans hollandica DSM 15978]
gi|433662734|gb|AGB50160.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanomethylovorans hollandica DSM 15978]
Length = 264
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 136/301 (45%), Gaps = 53/301 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
V+++ L+ +F L AA AN RR +A++PT+AI +V I NNTSV+ DE L
Sbjct: 3 MEVDILELSDRSAKFVLSNTSAAFANGIRRASLADVPTIAITEVNIYNNTSVLYDEQLGL 62
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+ LIP+ TSN ++ V K C P V L +E
Sbjct: 63 RMALIPL--------------TSNMED-FVPKEECSCGDFCPACQVS------LTLSAEG 101
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAV 254
P SQDL+ S++ ++P +I IA L GQ+I LEA A
Sbjct: 102 P-----------------KIVYSQDLVS--SDDKVQPADPNIPIADLREGQKIVLEAIAH 142
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
G G H++W Y+ +P++ E + V CPV++ I G + A
Sbjct: 143 MGYGNKHSRWQAGVACGYKNMPKV---EFSGCDLCGACVTECPVDI-----IKMGTESAE 194
Query: 315 VAQPRA--CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
++Q CTLCR C G + ++ + FIFT+ES G+ + + L A ++++
Sbjct: 195 ISQEDMLKCTLCRLCE--GVCDIDAIDVKTDEHSFIFTMESDGSYNTKELILNAGNVIKN 252
Query: 373 K 373
K
Sbjct: 253 K 253
>gi|402224256|gb|EJU04319.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 401
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 135/331 (40%), Gaps = 89/331 (26%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + L KD +EF + G+D + AN+FRR+++A++ T+AI+ V I NT+V+ DE L+HR+
Sbjct: 6 IRIRELAKDRVEFVMTGVDLSFANSFRRVIMADVATVAIDMVEIEVNTTVLVDEFLSHRI 65
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKN----------TIVFKLHVLCERGGPRLTVKTNELK 187
G+IP L E +++ IV+ + V C G + V ++ L
Sbjct: 66 GMIP------LTSTNCEEGMRYKRDCPCLGICRYCAIVYDIDVRCTEG--EMNVTSDHLT 117
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN---PIRPMLD-------IT 237
+P P S+++D+L + N P P D I+
Sbjct: 118 MVP--------------PDQWDHEEQDSSAAEDILSKRGKNFGVPAGPATDPDPNRRPIS 163
Query: 238 IARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE----DEDAE-KL 292
+ R+ GQ ++ A KGI K HAKWSP A + P L DE AE L
Sbjct: 164 LVRMRKGQALKARCVARKGIAKEHAKWSPCAAVGFEYDPHNKLRHTAYWYEVDEKAEWPL 223
Query: 293 VKTC-----PVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHF 347
K P +VFD I D F
Sbjct: 224 SKNADEEAPPGDVFDFTSI-------------------------------------PDRF 246
Query: 348 IFTIESTGALSPETLFTEAVKILEDKCERVI 378
F +E+TG+L+P+ + L+ K ++
Sbjct: 247 YFDVETTGSLAPQEACLRGLAELQQKLAGLV 277
>gi|403157658|ref|XP_003307056.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163504|gb|EFP74050.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 365
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
+ +V+V L F L GI+ +AN+ RR +IA+L T+AI V NTSV+ DE++
Sbjct: 17 SQLQVKVTELDDQHAAFILEGIELGLANSLRRTMIADLTTIAIHSVEFEENTSVLPDEMI 76
Query: 134 AHRLGLIPIIVDPRLFEYMS--END----TSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
AHRLGLIP+I + L +Y+ + D + + +I L C G L V +++L
Sbjct: 77 AHRLGLIPLISE-DLDKYLKNWQRDCTCLSYCDDCSIELVLSTKCTLVGDVLAVNSHDLV 135
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
P E KP +T Q + I +L GQE+
Sbjct: 136 ITPR------EDGAHRGDVGKPYQFTMPGGEQP--------------GVLITKLRKGQEV 175
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
L+ A+KGIG+ HAKWSPV+T + P
Sbjct: 176 RLKCRAIKGIGQEHAKWSPVSTIGFEYDP 204
>gi|70945964|ref|XP_742745.1| DNA-directed RNA polymerase II [Plasmodium chabaudi chabaudi]
gi|56521898|emb|CAH80621.1| DNA-directed RNA polymerase II, putative [Plasmodium chabaudi
chabaudi]
Length = 331
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 144/307 (46%), Gaps = 34/307 (11%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+E+ ++K++M F L + A+ANA RRI+++E+PT+A++ V + NTS DE +AHR+
Sbjct: 11 IEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRI 70
Query: 138 GLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIPI + F + + + T+ + + V C ++ V +++ L +
Sbjct: 71 GLIPIDSRNIKSYEFRERCKCKETCSRCTVQYIIEVKCNNAN-KIDVSHYDIEALDHEPN 129
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+P+ D+ ++ + T+ I I L Q + ++ A
Sbjct: 130 IPMPIPNDNKHNNIDKMDTA---------------------IPIVTLSKNQTLHMKLTAT 168
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE--DAEKLVKTCPVN--VFDIEDIGSGK 310
KGIGK HAKW P A Y + +IV+ D+ KL+ +N + ++++ +
Sbjct: 169 KGIGKMHAKWIP-ANVSYIIDHKIVINHPEVDKMPKEHKLIIANNLNPDCYILKEMDDDR 227
Query: 311 K-RATVAQPRACTLCRECLRCGEEWEKRVSIRRV---KDHFIFTIESTGALSPETLFTEA 366
+++ + + C E I +V + F F +ES G++ PE + A
Sbjct: 228 DVELQLSENMSVVMAESCRDTLTELGYNKDIVKVIYDETKFHFKVESVGSMPPEQIVEMA 287
Query: 367 VKILEDK 373
++ILE K
Sbjct: 288 IEILESK 294
>gi|390368205|ref|XP_781436.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1, partial [Strongylocentrotus purpuratus]
Length = 388
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 124/290 (42%), Gaps = 63/290 (21%)
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTS 158
+AN+ RR ++AE+PT+AI+ V I N+SV+ DE ++HR+GLIP+ D +
Sbjct: 143 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVV---------- 192
Query: 159 NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSS 218
+ + F CE +V EL L+ K + + + SS+
Sbjct: 193 ---DKLNFNRDCGCEEFCSDCSV------------ELSLDVKCTDDQTRHVTSRDLLSSN 237
Query: 219 QDLLPEFSNNP----IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
Q ++P S N + DI I +L GQE+ L A+A KG GK HAKW P A +
Sbjct: 238 QKVVPVPSRNQESSDYGEVDDILIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAAIAFEY 297
Query: 275 LPEIVLLEDVEDEDAEKLVKTCPVNVFD--IEDIGSGKKRATVAQPRACTLCRECLRCGE 332
P+ ++ V + E P + F ED GK
Sbjct: 298 DPDNIMRHTVYPKPEE-----WPKSEFTEVDEDTAQGKFDGDA----------------- 335
Query: 333 EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
V + F F +ES GAL+PE + + +L+ K + T+ S
Sbjct: 336 ----------VPNKFFFNVESIGALTPENIVFSGLSVLKKKLSDLQTQHS 375
>gi|219852957|ref|YP_002467389.1| DNA-directed RNA polymerase subunit D [Methanosphaerula palustris
E1-9c]
gi|219547216|gb|ACL17666.1| RNA polymerase insert [Methanosphaerula palustris E1-9c]
Length = 273
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 131/298 (43%), Gaps = 51/298 (17%)
Query: 82 RLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIP 141
RL + L G+ + NA RR + +E+P +AIE + I +NTS + DE+LAHR+GL+P
Sbjct: 7 RLDNTVARYTLTGVSPSFINAIRRAMCSEVPKLAIEDIKIYDNTSALFDEMLAHRIGLVP 66
Query: 142 IIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
+ + L Y+S + + E C+R T+ E P
Sbjct: 67 LKTNSDL--YVSADRCTCEGAG--------CDRCSTMYTLSV----------EGP----- 101
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIARLGPGQEIELEAHAVKGIGK 259
S+DL+P ++P +D I I +L GQ++ +EA A +GK
Sbjct: 102 ------------GMVYSRDLIP---SDPEAVPVDEKIPIVKLEKGQKVVIEARAEMNLGK 146
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
HAKW P Y+ P I + + + V CP +V ++ G +
Sbjct: 147 VHAKWQPTINCGYKNYPVITV--ETHCDACGTCVDQCPRDVLVLK---GGVLTVEEGKLE 201
Query: 320 ACTLC----RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+C+LC + CL G E + I FI +ES G+L T+ +++ L+++
Sbjct: 202 SCSLCKLCEKACLSTGIGDEPGIRISDDATRFIGVVESDGSLPVRTIIRQSLLYLKNE 259
>gi|388854978|emb|CCF51481.1| related to RPB3-DNA-directed RNA polymerase II chain [Ustilago
hordei]
Length = 346
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 135/310 (43%), Gaps = 39/310 (12%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ V +L +D F L +D + AN+ RRI+IA++PT+AI+ V I NNT+V+ DE LAHR
Sbjct: 13 KITVRQLNRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEFLAHR 72
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LG++P++ + D + E ++ L C G L V + +L
Sbjct: 73 LGMVPLLSMDCSKALVDHRDCACEDGCDRCSVELTLRARCTTRG-NLEVTSRDLIRSDTI 131
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ N + P+ + F P + I P I + ++ GQE+++
Sbjct: 132 ENATIYDDDAMNEPAAPK-HPDFGR-----PVGHDGSIPP---IMLVKMSKGQELDIRCI 182
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A KG K HAKWSP + + P L T FD +
Sbjct: 183 ARKGFAKEHAKWSPCSAVGFEYDPH------------NALRHTTYWYEFDAKQEWPEGPN 230
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
A + +P ++ K+V D F F +E++G++ P + + +LE
Sbjct: 231 AELEEPPQ-------EGAPFDYNKKV------DKFYFDVEASGSMHPAEIVETGLGLLEY 277
Query: 373 KCERVITELS 382
+ +++ ELS
Sbjct: 278 RVAQIVQELS 287
>gi|358055923|dbj|GAA98268.1| hypothetical protein E5Q_04951 [Mixia osmundae IAM 14324]
Length = 368
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 143/336 (42%), Gaps = 60/336 (17%)
Query: 54 YSGAYAS-MGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELP 112
YS A+ S + +D + N V+ I+ D ++F G+D ++AN RR+L +E+P
Sbjct: 4 YSTAFTSKLALDPPKTTNGLEQNIAVQEIQ--HDRVKFAWEGVDLSLANGLRRVLQSEIP 61
Query: 113 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSN-----EKNTIVFK 167
T+AI + + +N+SV+ DE LAHRL LIP+ + E D ++ T++ +
Sbjct: 62 TLAIGYISVKHNSSVLPDEFLAHRLALIPLQSTGIAHKLEKERDLCGCDDGCDECTVMLQ 121
Query: 168 LHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSN 227
L V C G +L V + +L LP + D P + E SN
Sbjct: 122 LDVACRSAG-KLDVTSKDLVVLPR------QDGQDRGGFGMP------------MSEHSN 162
Query: 228 NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED---V 284
I IA+LGPGQ I L A A +GI HAK PV+T + P L
Sbjct: 163 G-------ILIAQLGPGQRITLLATAHRGIALDHAKHCPVSTVGFEYDPHNKLHHTDLWS 215
Query: 285 EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344
E +DA+ V K V P A +W + S
Sbjct: 216 EQKDAKDRV----------------SKSTWVKTPNAKYEREPPSEDAVDWSGQPS----- 254
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
F F +E+ +L P L E +++L K VIT+
Sbjct: 255 -RFYFDVETVNSLPPFELVQEGLEVLIRKLA-VITQ 288
>gi|443895704|dbj|GAC73049.1| RNA polymerase II, subunit POLR2C/RPB3 [Pseudozyma antarctica T-34]
Length = 346
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 131/314 (41%), Gaps = 47/314 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ V +L +D F L +D + AN+ RRI+IA++PT+AI+ V I NNT+V+ DE LAHR
Sbjct: 16 KITVRQLNRDRANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEFLAHR 75
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP++ + + +V CE G R +V+ L
Sbjct: 76 LGLIPLL-------------SMDCAKALVDHRDCACEDGCDRCSVELTLRARCTTRGNLE 122
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP--IRP------MLDITIARLGPGQEIE 248
+ ++ D S F P +P RP M I + ++ GQE++
Sbjct: 123 VTSR-DLIRSDSIEGAQMFDDDAMNEPAAPKHPDFGRPVGHDGSMAPIMLVKMSKGQELD 181
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
+ A KG K HAKWSP + + P L T +D +
Sbjct: 182 IRCIARKGFAKEHAKWSPCSAVGFEYDPH------------NALRHTTYWYEYDAKQEWP 229
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
A + +P + + + F F +ES+G++ P + +
Sbjct: 230 EGPNAELEEP-------------PQEGAPFDYNKKANRFYFDVESSGSMHPAEIVETGLG 276
Query: 369 ILEDKCERVITELS 382
+LE + +++ ELS
Sbjct: 277 LLEYRVAQIVQELS 290
>gi|410074507|ref|XP_003954836.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
gi|372461418|emb|CCF55701.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
Length = 312
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + + CE + +V L G
Sbjct: 67 LGLIPL--------------QSTDIEQLEYSRDCFCEDHCDKCSVV---LTLQAVG---- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
E++ +N +K T S +LL +PI + + I +L GQE++L A
Sbjct: 106 -ESESTTNVYAKDLTIVS-----NLLGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCIA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW P A + P
Sbjct: 160 KKGISKEHAKWCPAAAIEFEYDP 182
>gi|375083505|ref|ZP_09730525.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
gi|374741832|gb|EHR78250.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
Length = 258
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 139/306 (45%), Gaps = 55/306 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+++++ + + F L G+D A ANA RR +I E+PT A+++V N S + DE++AHR
Sbjct: 2 QIKILEKRDNAIRFILEGVDIAFANALRRTIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L LIP+ FE + + T+ L E GP + + + +LK
Sbjct: 62 LALIPLTTPSDRFEL---DALELDDYTVTLGL----EAEGPAI-IYSGDLK--------- 104
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+P KP T DI I +L GQ + A+A G
Sbjct: 105 -----SDDPDVKPVT----------------------PDIPIVKLAEGQRLVFNAYAKLG 137
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
GK HAKW P A+Y+ L ++ + ++V + EK+ + IE+ + +
Sbjct: 138 RGKDHAKWQP-GFAYYKYLTKMHVSKEV--PNWEKIKELAARKKLPIEE---NENELIIT 191
Query: 317 QPRACTLCREC-LRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
+ L RE G++ ++ V V + F+FT+ES G L E + A+KIL K +
Sbjct: 192 TLTSFYLPREFDPYLGDKIKEEV----VPNTFVFTVESNGELPVEEIVALALKILMRKSD 247
Query: 376 RVITEL 381
+ I EL
Sbjct: 248 KFINEL 253
>gi|71018933|ref|XP_759697.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
gi|46099249|gb|EAK84482.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
Length = 329
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 140/314 (44%), Gaps = 47/314 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ V +L +D F L +D + AN+ RRI+IA++PT+AI+ V I NNT+V+ DE+LAHR
Sbjct: 13 KITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAHR 72
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LG++P++ + D + E ++ L C G L V + +L
Sbjct: 73 LGMVPLLSMDCAKALVDHRDCACEDGCDRCSVELTLRARCTTRG-NLEVTSRDLI---RS 128
Query: 193 SELPLETKPDSNPSSKPRT--YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+ T D + ++P + F P + I P I + ++ GQE+++
Sbjct: 129 DTIENATIYDDDAMAEPAAPKHPDFGR-----PVGHDGSIAP---IMLVKMSKGQELDIR 180
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
A KG K HAKWSP + + P L T FD
Sbjct: 181 CIARKGFAKEHAKWSPCSAVGFEYDPH------------NALRHTTYWYEFD-------A 221
Query: 311 KRATVAQPRACTLCRECLRCGE--EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
K+ P A C E + G ++ K+ S F F +E++G++ P + +
Sbjct: 222 KQEWPEGPNA--ECEEPPQEGAPFDYNKKAS------KFYFDVEASGSMHPAEIVETGLG 273
Query: 369 ILEDKCERVITELS 382
+LE + +++ ELS
Sbjct: 274 LLEYRVAQIVQELS 287
>gi|395332694|gb|EJF65072.1| RBP11-like subunits of RNA polymerase [Dichomitus squalens LYAD-421
SS1]
Length = 410
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 28/212 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L K+ + F L +D + AN+FRR++IA++PT+AI+ V I NT+V+ DE +AHRL
Sbjct: 10 VRIRDLKKNSVNFVLENVDLSFANSFRRVMIADIPTVAIDMVEIETNTTVLPDEFIAHRL 69
Query: 138 GLIPIIV----DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
G+IP++ + + + + I +L+V C + + +N L+ +
Sbjct: 70 GMIPLVSTMCDEAMRYTRDCTCEVRCQYCAIELQLNVACHEANTTMHITSNMLEVV---- 125
Query: 194 ELPLETKPDSNPSSKPRTYTSFSS---SQDLLPEFSN--NPIRP----MLDITIARLGPG 244
P++KP +Y S+ + ++L N +PI + I I ++ G
Sbjct: 126 -----------PTNKPGSYGSYDTDDGGEELAKRVENFGHPIGKDDPDVPPILICKIRMG 174
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QE+ + A KGI K HAKWSP + + P
Sbjct: 175 QELRVRCIAKKGIAKEHAKWSPCSAVAFEYDP 206
>gi|440635232|gb|ELR05151.1| DNA-directed RNA polymerase II subunit C [Geomyces destructans
20631-21]
Length = 342
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 131/306 (42%), Gaps = 71/306 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F+L +D + AN+ RR+++AE+PTMAI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 26 VDFELSNVDLSFANSLRRVILAEVPTMAIDLVEVEANTSVLADEFLAHRLGLIPL----- 80
Query: 148 LFEYMSENDTSNEKNT--IVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
N KN + + CE+ + +V L L K DS+
Sbjct: 81 -----------NSKNAADVNYSRDCECEQYCEQCSVT------------LFLNAKCDSDE 117
Query: 206 SSKPRT---------YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
K ++ + E N P+ I +L GQE++++ A KG
Sbjct: 118 IMKVYARDLVVDSLKANAWVGNPIFTDEGGNGPV-------ICKLRKGQELKMKCIAKKG 170
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
I K HAKW+P A + P L ++++ ED ++ A
Sbjct: 171 IAKEHAKWAPTAAVGFEYDPHNKLRH---------------MDLWFEEDPAKEWPKSKYA 215
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
E + GE ++ V F F +ES G L P+ + E +K+L+ K
Sbjct: 216 D------WEEPAQEGEPFDYDA----VPGSFYFELESAGNLEPDAVVQEGIKVLQQKLAT 265
Query: 377 VITELS 382
+I LS
Sbjct: 266 IIAGLS 271
>gi|405121028|gb|AFR95798.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var. grubii
H99]
Length = 377
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N R+ + L + D F L G++ A AN+ RR+++A++PT+AI++VL NT+ + DE++
Sbjct: 23 NQPRLLLRNLNESDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMI 82
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNEKNTIVFKLHVLCERGGP------RLTVKTNE 185
AHRLGLIP+I + Y + D + L + G R+T E
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVAFSGNDGEQFMRVTSDMLE 142
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ P G P P S + R + + P NP P I IA++G GQ
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVP--PILIAKMGKGQ 200
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
EI++ A KGI K HAKWSP++T + P
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|409080609|gb|EKM80969.1| hypothetical protein AGABI1DRAFT_112673 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197524|gb|EKV47451.1| hypothetical protein AGABI2DRAFT_192637 [Agaricus bisporus var.
bisporus H97]
Length = 380
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 17/204 (8%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L KD + F L +D A AN+FRR+++A+LPT+AI+ V I NT+V+ DE +AHRL
Sbjct: 11 VRIRELAKDKVNFVLENVDLAFANSFRRVMMADLPTVAIDMVEIEINTTVLPDEFIAHRL 70
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
G IP++ D + +I+ LHV C + V +N L +P
Sbjct: 71 GQIPLLSSNCDEAIRYTRDCTCLAGCPFCSIMLNLHVSCNDDN-TMNVTSNHLDIMPFPE 129
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIELEAH 252
+ +T P S + + P N+P P+L I ++ GQE++ +
Sbjct: 130 DQEQQTDPGEELSKRGEYFGH--------PVGKNDPNASPIL---ICKIRKGQELKAKCT 178
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP + + P
Sbjct: 179 AKKGIAKEHAKWSPCSAVAFEYDP 202
>gi|384498629|gb|EIE89120.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Rhizopus delemar RA 99-880]
Length = 201
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 29/199 (14%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + LTKD + F L D ++ANA RR++IAE+PT+AI+ V I NT+V+ DE +AHRL
Sbjct: 14 ITIRELTKDRINFILSDTDLSVANALRRVMIAEVPTVAIDMVEIETNTTVLADEFIAHRL 73
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
G++PI S E + + C + +V EL L
Sbjct: 74 GMVPI--------------DSREVEKLRYTRDCTCSQYCSECSV------------ELTL 107
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
K + + T S++ P + +L + +L G E++L+ A KG+
Sbjct: 108 HVKCTDDRTKDVTTRDLMSTNPSFTPVLQDKDDSGVL---LVKLRKGHELKLKCIAKKGV 164
Query: 258 GKTHAKWSPVATAWYRMLP 276
K HAKWSPV+ + P
Sbjct: 165 AKEHAKWSPVSGVAFEYDP 183
>gi|134112527|ref|XP_775239.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257891|gb|EAL20592.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 377
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N R+ + L + D F L G++ A AN+ RR+++A++PT+AI++VL NT+ + DE++
Sbjct: 23 NQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMI 82
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNEKNTIVFKLHVLCERGGP------RLTVKTNE 185
AHRLGLIP+I + Y + D + L + G R+T E
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVTFSGNDGEQFMRVTSDMLE 142
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ P G P P S + R + + P NP P I IA++G GQ
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVP--PILIAKMGKGQ 200
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
EI++ A KGI K HAKWSP++T + P
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|398411480|ref|XP_003857078.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
gi|339476963|gb|EGP92054.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
Length = 361
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 136/317 (42%), Gaps = 55/317 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V + K ++F L A AN+ RR ++AE+PT+AI+ V + NTSV+ DE LAHR
Sbjct: 18 KVTIRETNKTTIKFALSNTSLAFANSIRRTMLAEIPTIAIDLVEVEANTSVLADEFLAHR 77
Query: 137 LGLIPI-------IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
LGLIP+ +VD R + + D ++ +++ +L+V L V +L
Sbjct: 78 LGLIPLSTKGVEEMVDWRDCD---QCDEHCDQCSVILRLNVANRSSDQNLKVFARDL--- 131
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQE 246
+S ++ +S D LPE PI R I +L GQE
Sbjct: 132 ----------FVESGANAGYNRSNGMGNSSDELPE-RGRPIVMDRDNQGPLICQLRRGQE 180
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV--EDEDAEKLVKTCPVNVFDIE 304
I+L+ A KGI K HAKW+P A + P L + DA+ N E
Sbjct: 181 IKLKCIARKGIAKEHAKWAPTAAIGFEYDPWNKLRHTTLWYETDAKAEWPRPEKNGGWEE 240
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
+ G+ A+P A F +E TG + P+ +
Sbjct: 241 EPQEGEPFNYAAEPSA--------------------------FYIELEGTGVMPPDQILH 274
Query: 365 EAVKILEDKCERVITEL 381
+++L++K +ITEL
Sbjct: 275 SGIRVLQNKLAGIITEL 291
>gi|319411912|emb|CBQ73955.1| related to RPB3-DNA-directed RNA polymerase II chain [Sporisorium
reilianum SRZ2]
Length = 350
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 132/310 (42%), Gaps = 39/310 (12%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ V +L +D F L +D + AN+ RRI+IA++PT+AI+ V + NNT+V+ DE LAHR
Sbjct: 13 KITVRQLNRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEVRNNTTVLPDEFLAHR 72
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LG+IP++ + D + E ++ L C G L V + +L
Sbjct: 73 LGMIPLLSMDCAKALVDHRDCACEDGCDRCSVELTLRARCTTRG-NLEVTSRDLI---RS 128
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
+ T D + ++P + + + S P I + ++ GQE++L
Sbjct: 129 DTIESATIYDDDAMAEPAAPKHPDFGRPVGHDGSTPP------IMLVKMSKGQELDLRCI 182
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A KG K HAKWSP + + P L T FD +
Sbjct: 183 ARKGFAKEHAKWSPCSAVGFEYDPH------------NALRHTTYWYEFDAKQEWPEGAN 230
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
A +P + + + F F +E++G++ P + + +LE
Sbjct: 231 AEFEEP-------------PQEGAPFDYNKKANKFYFDVEASGSMHPAEIVETGLGLLEY 277
Query: 373 KCERVITELS 382
+ +++ ELS
Sbjct: 278 RVAQIVQELS 287
>gi|58267768|ref|XP_571040.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227274|gb|AAW43733.1| RNA polymerase II subunit 3, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 377
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N R+ + L + D F L G++ A AN+ RR+++A++PT+AI++VL NT+ + DE++
Sbjct: 23 NQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMI 82
Query: 134 AHRLGLIPIIVD--PRLFEYMSENDTSNEKNTIVFKLHVLCERGGP------RLTVKTNE 185
AHRLGLIP+I + Y + D + L + G R+T E
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVTFSGNDGEQFMRVTSDMLE 142
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ P G P P S + R + + P NP P I IA++G GQ
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVP--PILIAKMGKGQ 200
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
EI++ A KGI K HAKWSP++T + P
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|393217477|gb|EJD02966.1| insert subdomain of RNA polymerase alpha subunit [Fomitiporia
mediterranea MF3/22]
Length = 284
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 17/197 (8%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
KD + F L +D + AN+ RR+++A++PT+AI+ V + NTSV+ DE +AHRLG++P+I
Sbjct: 15 KDRVNFVLENVDLSFANSIRRVMMADVPTLAIDIVELEMNTSVLPDEFIAHRLGMVPLIS 74
Query: 145 DPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
D + E + T+ L V C G L V +N L +P L + +
Sbjct: 75 TNCEEAIRYNRDCTCEVHCDFCTVSLMLDVTCGEDG-NLDVTSNHLDVIPVNYTLLNDGE 133
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIELEAHAVKGIGK 259
+ +P + P P + P+L I ++ PGQ+I+ A KGI K
Sbjct: 134 GGEEINKRPEKFGC--------PVGQGEPGVHPVL---ICKMRPGQQIKARCIAKKGIAK 182
Query: 260 THAKWSPVATAWYRMLP 276
HAKWSP + + P
Sbjct: 183 EHAKWSPCSAVAFEYDP 199
>gi|323348153|gb|EGA82407.1| Rpb3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 240
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 32/204 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
LGLIP+ +D EY D E + C++ LT++
Sbjct: 67 LGLIPLQSMDIEQLEY--SRDCFCEDH---------CDKCSVVLTLQAF----------- 104
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAH 252
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 105 -XESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|170291194|ref|YP_001738010.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175274|gb|ACB08327.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 251
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 133/307 (43%), Gaps = 57/307 (18%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+V VI L+ L G+ + AN+ RR +IAE+PT AI++V+ NT+ DE +AH
Sbjct: 1 MKVRVIELSDQRTLLVLEGVSPSFANSIRRAIIAEVPTFAIDEVIFFENTTPFFDEYIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RL +IP+ + + T+V +L + P V + ELK
Sbjct: 61 RLAMIPLRTSLDVLRV-------DPNRTVVLELSKKAK--DPIEVVYSGELK-------- 103
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS P Y + D +P I ++ GQ++ +A A
Sbjct: 104 ----------SSDPLIYP----ANDKIP--------------IIKMRKGQKLRFQAIARI 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G GK H+KWSP A Y +P L + VE + ++ C I S + V
Sbjct: 136 GRGKDHSKWSPAAAVGYSYMPIYELKDPVECDLSQ--CSNC---------IESDGGISRV 184
Query: 316 AQPRACTLCRECL-RCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
P C C E L RC ++ R + I + ESTG+L PE +F+EA+ ++ K
Sbjct: 185 DYPVLCEGCLEALERCRVRNPDKIIRRWDESRIIISYESTGSLRPEEIFSEALNQVKGKL 244
Query: 375 ERVITEL 381
++ ++
Sbjct: 245 GELLNKI 251
>gi|323337216|gb|EGA78470.1| Rpb3p [Saccharomyces cerevisiae Vin13]
Length = 240
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 32/204 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
LGLIP+ +D EY D E + C++ LT++
Sbjct: 67 LGLIPLQSMDIEQLEY--SRDCFCEDH---------CDKCSVVLTLQAFG---------- 105
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAH 252
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 --ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|159041731|ref|YP_001540983.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
gi|157920566|gb|ABW01993.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
Length = 305
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 47/293 (16%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V+V++ + D ++F + G+ ++ N+ RRILI ++P +AI++V++ +NT+V+ DEVLAHRL
Sbjct: 7 VKVLQYSDDYLKFVVEGVKPSLINSLRRILITDVPVLAIDRVIVLDNTTVMYDEVLAHRL 66
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
+IP+ + + E + E P L +L N + +
Sbjct: 67 SMIPLKTNLEKLPKIEECED---------------ELVDPSLCQVRYQLSIKANDQVVSV 111
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSN-NPIRPMLDITIARLGPGQEIELEAHAVKG 256
K DL+P+ + P+ P D I ++ GQ + +EA+A G
Sbjct: 112 YAK-------------------DLIPDDPDFAPVYP--DTLIVKMSKGQVLSIEAYAKLG 150
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
+ HAKW ++Y P++ LL + DE +++C + I +
Sbjct: 151 RARDHAKWQACLASYY-YYPKVQLL-NPRDERCAACLESC-------KGITRKNDEYVIT 201
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
P CT C E + + +D ++F +E+ G +S L EA ++
Sbjct: 202 DPLQCTF-DNWKTCEEACSGSLVVDWDEDKYVFWVENYGNMSMVNLLKEAFRV 253
>gi|353251635|pdb|3J0K|C Chain C, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 268
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 32/204 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
LGLIP+ +D EY D E + C++ LT++
Sbjct: 67 LGLIPLQSMDIEQLEY--SRDCFCEDH---------CDKCSVVLTLQAFG---------- 105
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAH 252
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 --ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|296412916|ref|XP_002836165.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629972|emb|CAZ80356.1| unnamed protein product [Tuber melanosporum]
Length = 340
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 124/303 (40%), Gaps = 75/303 (24%)
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI----IVDPR 147
L D A ANA RRI++AE+PT+AI+ V I NTSVI DE L HRLG++P+ I D
Sbjct: 30 LSNCDLAFANALRRIMLAEIPTIAIDIVEIQTNTSVIPDEFLCHRLGMVPLDSTNIDDKL 89
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL--PLETKPDSNP 205
++ D E+ ++ LH C G +TV +L + G++L P+ P+
Sbjct: 90 IYTRDCFCDQYCERCSVTLSLHARC-TGEDNVTVYARDLV-IAEGAQLGSPVINDPEGQG 147
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
+ I +L GQE+ L+ A KGI K HAKW+
Sbjct: 148 T------------------------------VICKLRKGQELRLKCIAKKGIAKEHAKWA 177
Query: 266 PVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCR 325
P A + P L ++ + ED ++ A
Sbjct: 178 PTAAVGFEYDPWNKLRH---------------IDYWYEEDAKEEWPKSKYA--------- 213
Query: 326 ECLRCGEEWE------KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVIT 379
+WE + + V F IES G+L P+ + + +K L++K VI
Sbjct: 214 -------DWEEPPIEGEPFNYDAVPSRFYLDIESAGSLPPDEILQQGIKYLQEKLAAVIE 266
Query: 380 ELS 382
S
Sbjct: 267 TFS 269
>gi|332157864|ref|YP_004423143.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
gi|331033327|gb|AEC51139.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
Length = 259
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 137/309 (44%), Gaps = 59/309 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++++++ T+D + F L G+ A AN+ RR ++ E+PT A+++V N S + DE++AHR
Sbjct: 3 KIKILKKTEDSITFLLEGVSVAFANSLRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ FE + E + L + E GP + +
Sbjct: 63 LAMIPLKTPVDRFEL-----DALELDDYTVTLSLKAE--GPGIVYSGD------------ 103
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
LE+ +P KP NP +I I +L GQ++ A+A G
Sbjct: 104 LES---DDPDVKPV-----------------NP-----NIPIVKLAKGQKLVFNAYARLG 138
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVED-EDAEKLVKT--CPVNVFDIEDIGSGKKRA 313
GK HAKW P T +Y+ +I + + +E E +KL K PV D E I
Sbjct: 139 RGKDHAKWQPGFT-YYKYYTKIHISKKIEGWEKLKKLAKKRGLPVEENDNEII------V 191
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+P E E WE+ V + ++F +ES G L E + A+KIL K
Sbjct: 192 ETIKPFYIPKEFEEYEGKEIWEEIVP-----NSYVFVVESNGELPVEEIVKIALKILMRK 246
Query: 374 CERVITELS 382
+R I EL
Sbjct: 247 ADRFINELQ 255
>gi|358365833|dbj|GAA82455.1| RNA polymerase II subunit 3 [Aspergillus kawachii IFO 4308]
Length = 338
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 127/305 (41%), Gaps = 68/305 (22%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR+++AE+PTMAI+ V + NTSV+ DE LAHRLGLIP++
Sbjct: 24 VDFKLTSVDLAFANSLRRVMLAEIPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLVSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ EY + + + + ++ LH C G + V +L
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLSLHARC-TGDDIMRVYARDLV---------------- 126
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
S R + L PE N P+ I +L GQE+++ A KGI K HAK
Sbjct: 127 --VSGERANEWVGNPVILDPE-GNGPL-------ICKLRRGQELKMTCIAKKGIAKEHAK 176
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
W P + + P L V+ E K PV+
Sbjct: 177 WMPTSAIGFEYDPHNN-LRHVDYWYEEDAAKEWPVSA----------------------- 212
Query: 324 CRECLRCGEEWEKRVSIRRVKDH------FIFTIESTGALSPETLFTEAVKILEDKCERV 377
WE+ V + D+ F +ES G L P+ + + + +L+ K V
Sbjct: 213 -------NAGWEQPVPPDQPFDYDAQPNSFYIDVESIGTLEPDMIIQQGITVLQRKLASV 265
Query: 378 ITELS 382
I+ LS
Sbjct: 266 ISSLS 270
>gi|14591408|ref|NP_143488.1| DNA-directed RNA polymerase subunit D [Pyrococcus horikoshii OT3]
gi|3258066|dbj|BAA30749.1| 261aa long hypothetical DNA-directed RNA polymerase subunit D
[Pyrococcus horikoshii OT3]
Length = 261
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 135/313 (43%), Gaps = 67/313 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++++++ T+D + F L G+ A ANA RR ++ E+PT A+++V N S + DE++AHR
Sbjct: 5 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 64
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ FE + + T+ L E GP + V + +LK
Sbjct: 65 LAMIPLKTPTDRFEL---DALELDDYTVTLSL----EAEGPGI-VYSGDLK--------- 107
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+P KP T DI I +L GQ + A+A G
Sbjct: 108 -----SDDPDVKPVT----------------------PDIPIVKLAKGQRLVFNAYAKLG 140
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
GK HAKW P T +Y+ + + + + EKL K KKR
Sbjct: 141 RGKDHAKWQPGFT-YYKYFTRVHISKKI--NGWEKLAKLA-------------KKRGLPT 184
Query: 317 QPRACTLCRECLRC------GEEWE-KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ + E ++ EE+E K + V D ++F +E+ G L E + A++I
Sbjct: 185 KENEEEVIVETIKPFYIPKEFEEYEGKEIWEEIVPDTYVFVVETNGELPVEEIVKIALRI 244
Query: 370 LEDKCERVITELS 382
L K +R I EL
Sbjct: 245 LMRKADRFINELQ 257
>gi|13124813|sp|O59303.2|RPOD_PYRHO RecName: Full=DNA-directed RNA polymerase subunit D
Length = 259
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 135/313 (43%), Gaps = 67/313 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++++++ T+D + F L G+ A ANA RR ++ E+PT A+++V N S + DE++AHR
Sbjct: 3 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
L +IP+ FE + + T+ L E GP + V + +LK
Sbjct: 63 LAMIPLKTPTDRFEL---DALELDDYTVTLSL----EAEGPGI-VYSGDLK--------- 105
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+P KP T DI I +L GQ + A+A G
Sbjct: 106 -----SDDPDVKPVT----------------------PDIPIVKLAKGQRLVFNAYAKLG 138
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
GK HAKW P T +Y+ + + + + EKL K KKR
Sbjct: 139 RGKDHAKWQPGFT-YYKYFTRVHISKKI--NGWEKLAKLA-------------KKRGLPT 182
Query: 317 QPRACTLCRECLRC------GEEWE-KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ + E ++ EE+E K + V D ++F +E+ G L E + A++I
Sbjct: 183 KENEEEVIVETIKPFYIPKEFEEYEGKEIWEEIVPDTYVFVVETNGELPVEEIVKIALRI 242
Query: 370 LEDKCERVITELS 382
L K +R I EL
Sbjct: 243 LMRKADRFINELQ 255
>gi|337283749|ref|YP_004623223.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
gi|334899683|gb|AEH23951.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
Length = 259
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 139/312 (44%), Gaps = 67/312 (21%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+VE++ ++ ++F L G+ A ANA RR ++ E+PT A+++V N S + DE++AHR
Sbjct: 3 KVEILEKRENAIKFILEGVSIAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 137 LGLIPII--VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
L +IP+ VD + + +D + + + E GP + V + +LK
Sbjct: 63 LAMIPLTTPVDRFALDSLELDD---------YTVTLSLEAEGPGV-VYSGDLK------- 105
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
+P KP T DI I +L GQ + A+A
Sbjct: 106 -------SDDPDVKPVT----------------------PDIPIVKLAEGQRLVFNAYAK 136
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDED-----AEKLVKTCPVNVFDIEDIGSG 309
G GK HAKW P A+Y+ +I + + + + AEK + PV D E I
Sbjct: 137 LGRGKDHAKWQP-GFAYYKYYTKIHISKSIPGWEKLKSLAEK--RGLPVEETDEEVI--- 190
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
T +P E E WE+ V + ++FT+E+ G L E + A++I
Sbjct: 191 ---VTTLKPFYIPREFEEYESKEIWEEIVP-----EAYVFTVETNGELPVEEVVGIALRI 242
Query: 370 LEDKCERVITEL 381
L K +R I+EL
Sbjct: 243 LMRKSDRFISEL 254
>gi|398364469|ref|NP_012243.3| Rpb3p [Saccharomyces cerevisiae S288c]
gi|730603|sp|P16370.2|RPB3_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=B44.5; AltName:
Full=DNA-directed RNA polymerase II 45 kDa polypeptide
gi|14278326|pdb|1I3Q|C Chain C, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278337|pdb|1I50|C Chain C, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278367|pdb|1I6H|C Chain C, Rna Polymerase Ii Elongation Complex
gi|20150715|pdb|1K83|C Chain C, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749618|pdb|1NIK|C Chain C, Wild Type Rna Polymerase Ii
gi|30749739|pdb|1NT9|C Chain C, Complete 12-Subunit Rna Polymerase Ii
gi|34810555|pdb|1PQV|C Chain C, Rna Polymerase Ii-Tfiis Complex
gi|46015417|pdb|1R5U|C Chain C, Rna Polymerase Ii Tfiib Complex
gi|46015782|pdb|1SFO|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965913|pdb|1R9S|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965925|pdb|1R9T|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966109|pdb|1TWA|C Chain C, Rna Polymerase Ii Complexed With Atp
gi|56966123|pdb|1TWC|C Chain C, Rna Polymerase Ii Complexed With Gtp
gi|56966133|pdb|1TWF|C Chain C, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966143|pdb|1TWG|C Chain C, Rna Polymerase Ii Complexed With Ctp
gi|56966153|pdb|1TWH|C Chain C, Rna Polymerase Ii Complexed With 2'datp
gi|58177166|pdb|1WCM|C Chain C, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679446|pdb|1Y1W|C Chain C, Complete Rna Polymerase Ii Elongation Complex
gi|61679463|pdb|1Y77|C Chain C, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679504|pdb|1Y1V|C Chain C, Refined Rna Polymerase Ii-tfiis Complex
gi|61679517|pdb|1Y1Y|C Chain C, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754245|pdb|2B63|C Chain C, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590856|pdb|2B8K|C Chain C, 12-Subunit Rna Polymerase Ii
gi|122920063|pdb|2E2H|C Chain C, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920078|pdb|2E2I|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920093|pdb|2E2J|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921032|pdb|2NVQ|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921068|pdb|2NVT|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921084|pdb|2NVX|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921099|pdb|2NVY|C Chain C, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921111|pdb|2NVZ|C Chain C, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104676|pdb|2JA5|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104691|pdb|2JA6|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104712|pdb|2JA7|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104724|pdb|2JA7|O Chain O, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104736|pdb|2JA8|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387186|pdb|2YU9|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877775|pdb|2R7Z|C Chain C, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172229|pdb|2R92|C Chain C, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172242|pdb|2R93|C Chain C, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613464|pdb|2VUM|C Chain C, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368736|pdb|3CQZ|C Chain C, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983592|pdb|3FKI|C Chain C, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781918|pdb|3GTG|C Chain C, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781931|pdb|3GTJ|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781944|pdb|3GTK|C Chain C, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781957|pdb|3GTL|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781970|pdb|3GTM|C Chain C, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781984|pdb|3GTO|C Chain C, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781997|pdb|3GTP|C Chain C, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782010|pdb|3GTQ|C Chain C, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104513|pdb|3H3V|D Chain D, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839443|pdb|3HOU|C Chain C, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839458|pdb|3HOU|O Chain O, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839473|pdb|3HOV|C Chain C, Complete Rna Polymerase Ii Elongation Complex Ii
gi|266618767|pdb|3K1F|C Chain C, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914554|pdb|3K7A|C Chain C, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982477|pdb|3M3Y|C Chain C, Rna Polymerase Ii Elongation Complex C
gi|295982490|pdb|3M4O|C Chain C, Rna Polymerase Ii Elongation Complex B
gi|325053965|pdb|3PO2|C Chain C, Arrested Rna Polymerase Ii Elongation Complex
gi|325053980|pdb|3PO3|C Chain C, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634540|pdb|3QT1|C Chain C, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197458|pdb|3RZD|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197470|pdb|3RZO|C Chain C, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197482|pdb|3S14|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197494|pdb|3S15|C Chain C, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197506|pdb|3S16|C Chain C, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197518|pdb|3S17|C Chain C, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197530|pdb|3S1M|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197542|pdb|3S1N|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197554|pdb|3S1Q|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197566|pdb|3S1R|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197578|pdb|3S2D|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781199|pdb|3S2H|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380838|pdb|4A3C|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546292|pdb|4A3B|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546310|pdb|4A3D|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546327|pdb|4A3E|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546344|pdb|4A3F|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546361|pdb|4A3J|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546378|pdb|4A3K|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546394|pdb|4A3L|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546411|pdb|4A3M|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977881|pdb|4A3G|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977896|pdb|4A3I|C Chain C, Rna Polymerase Ii Binary Complex With Dna
gi|380764981|pdb|4A93|C Chain C, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145448|pdb|4BBR|C Chain C, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145461|pdb|4BBS|C Chain C, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|599978|emb|CAA86971.1| RNA polymerase II [Saccharomyces cerevisiae]
gi|151943136|gb|EDN61471.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190406243|gb|EDV09510.1| RNA polymerase II 45 kDa subunit [Saccharomyces cerevisiae RM11-1a]
gi|207344276|gb|EDZ71474.1| YIL021Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272154|gb|EEU07153.1| Rpb3p [Saccharomyces cerevisiae JAY291]
gi|259147237|emb|CAY80490.1| Rpb3p [Saccharomyces cerevisiae EC1118]
gi|285812625|tpg|DAA08524.1| TPA: Rpb3p [Saccharomyces cerevisiae S288c]
gi|323333059|gb|EGA74460.1| Rpb3p [Saccharomyces cerevisiae AWRI796]
gi|323354620|gb|EGA86456.1| Rpb3p [Saccharomyces cerevisiae VL3]
gi|349578928|dbj|GAA24092.1| K7_Rpb3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765154|gb|EHN06668.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298697|gb|EIW09793.1| Rpb3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 318
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|257471948|pdb|3I4M|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471963|pdb|3I4N|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
Length = 324
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 13 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 72
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 73 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 111
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 112 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 162
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 163 CVAKKGIAKEHAKWGPAAAIEFEYDP 188
>gi|171186411|ref|YP_001795330.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
gi|229564213|sp|B1YC30.1|RPOD_THENV RecName: Full=DNA-directed RNA polymerase subunit D
gi|170935623|gb|ACB40884.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
Length = 262
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 126/293 (43%), Gaps = 83/293 (28%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G ++ N+ RR++I+ELP MAI+ V++ NNTSV+ DE+LAHRLGLIP+ + +
Sbjct: 20 GAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLAHRLGLIPLTTPLQSLPPIE 79
Query: 154 ENDTS---NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPR 210
+ ++ + T+ F L V +TV + +L + +PD P K
Sbjct: 80 DCESGLADPSECTVRFTLQV---NADGEVTVYSGDL----------VSERPDVVPVHK-- 124
Query: 211 TYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATA 270
DI I +L GQ I LEA+A G + HAKW A A
Sbjct: 125 ------------------------DIPIVKLVKGQSIVLEAYAKLGRARGHAKWQ-AALA 159
Query: 271 WYRMLPEIVLLEDVEDEDA-EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL-----C 324
Y P + +V DE E+ + C + P CT C
Sbjct: 160 SYYYYPRV----EVRDESCRERCREVC----------------RDLTNPLECTFNKAMTC 199
Query: 325 RECLRCGE----EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
R+ CG+ +WE ++ ++F +ES G +T EA +IL+ K
Sbjct: 200 RDL--CGDKLHVDWE--------RNKYVFWVESFGNYDVDTALREAFRILKRK 242
>gi|390602421|gb|EIN11814.1| hypothetical protein PUNSTDRAFT_61925 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 301
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 32/211 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L KD + F L +D A AN+ RR+++A++PT+AI+ V I NT+V+ DE LAHRL
Sbjct: 11 VRIRDLKKDRVNFVLENVDLAFANSLRRVMMADIPTVAIDLVEIETNTTVLSDEFLAHRL 70
Query: 138 GLIPIIV----DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN-- 191
G++P++ + + +S +IV +LHV C L V ++ L +P
Sbjct: 71 GMVPLVSTNCDEAIRYSRDCSCMSSCSYCSIVLQLHVSCTEDDTTLNVTSDHLDVVPASD 130
Query: 192 ------GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
G EL + +P K + P+L + +L GQ
Sbjct: 131 DDQGDPGEELTKRVENFGSPVGK-----------------GVEGVDPVL---LCKLRKGQ 170
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
E+++ A KGI K HAK+SP A + P
Sbjct: 171 ELKVRCIAKKGISKEHAKFSPCAAVSFEYDP 201
>gi|254839488|pdb|3HOW|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839503|pdb|3HOX|C Chain C, Complete Rna Polymerase Ii Elongation Complex V
gi|254839518|pdb|3HOY|C Chain C, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839533|pdb|3HOZ|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
Length = 347
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 36 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 95
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 96 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 134
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 135 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 185
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 186 CVAKKGIAKEHAKWGPAAAIEFEYDP 211
>gi|121715950|ref|XP_001275584.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
gi|119403741|gb|EAW14158.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
Length = 333
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 127/307 (41%), Gaps = 72/307 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR+++AE+PTMAI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAHRLGLIPLNSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNEL--------KWLPNGSEL 195
+ EY + D + + ++ LH C G + V +L +W+
Sbjct: 84 DQDVEYTRDCDCEDRCARCSVTLTLHARC-TGDEIMPVYARDLVVTGERANEWV----GT 138
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ T P+ S I +L GQE+++ A K
Sbjct: 139 PVLTDPEGKGS------------------------------LICKLRRGQELKMTCIAKK 168
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G+ K HAKW+P A + P L + + P+ + I + + A
Sbjct: 169 GMAKEHAKWAPTAAVGFEYDPHNNL------RHVDYWYEEDPIKEWPISQNAAWEHAAPP 222
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
QP ++F +ES G L P+T+ + + +L+ K
Sbjct: 223 DQP-------------------FDYDATPNNFYIDVESIGNLDPDTIIQQGIVVLQRKLA 263
Query: 376 RVITELS 382
VI+ LS
Sbjct: 264 TVISSLS 270
>gi|172213|gb|AAA34889.1| RNA polymerase II (EC 2.7.7.6) [Saccharomyces cerevisiae]
Length = 318
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPAAGIEFEYDP 182
>gi|67540164|ref|XP_663856.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|40739446|gb|EAA58636.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|259479538|tpe|CBF69852.1| TPA: RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090)
[Aspergillus nidulans FGSC A4]
Length = 333
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 128/306 (41%), Gaps = 70/306 (22%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR+++AE+PTMAI+ V + N+SV+ DE+LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAHRLGLIPLDSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCE-----RGGPRLTVKTNEL--KWLPNGSELP 196
+ EY + + + + ++ LH C R R V T E +W+ N P
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLSLHARCTSDEIMRVYARDLVITGERANEWVGN----P 139
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
+ T PD N P+ I +L GQE+++ A KG
Sbjct: 140 VITDPD-----------------------GNGPL-------ICKLRRGQELKMTCIAKKG 169
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
I K H+KW+P A + P L + + PV + + + + A
Sbjct: 170 IAKEHSKWAPTAAIGFEYDPHNNLRH------VDYWYEEDPVKEWPVSHNAAWEPAAPAD 223
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
QP ++F +ES G L P+ + + + +L+ K
Sbjct: 224 QP-------------------FDYDAQPNNFYIDVESIGNLEPDMIIQQGITVLQRKLAA 264
Query: 377 VITELS 382
I LS
Sbjct: 265 AIKSLS 270
>gi|260799989|ref|XP_002594919.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
gi|229280157|gb|EEN50930.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
Length = 275
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 101/213 (47%), Gaps = 27/213 (12%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N +V + L+ ++++F + D ++ANA RRI IAE+PT+AI+ V + N+SV+ DE
Sbjct: 3 YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERGGPRLTVKTNELK 187
+AHR+GLIP+ D + D + + I L V C R V T +L
Sbjct: 63 FIAHRVGLIPLTSDDIVDRMQYSRDCTCAEFCADCAIELTLDVKCTDDQTR-HVTTRDLI 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
SNP P T ++D + DI I +L GQE+
Sbjct: 122 --------------SSNPRVVPVTS---RRAEDETAGYGEAD-----DILIVKLRKGQEL 159
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
+L A A KG K HAKW+P A + P+ L
Sbjct: 160 KLRAFAKKGFAKEHAKWNPTAGVAFEYDPDNAL 192
>gi|50290755|ref|XP_447810.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527121|emb|CAG60759.1| unnamed protein product [Candida glabrata]
Length = 312
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 30/203 (14%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ T+D+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE LAHR
Sbjct: 7 QVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAHR 66
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + + CE + +V L
Sbjct: 67 LGLIPL--------------QSTDIEQLEYSRDCFCEDHCDKCSVV------------LT 100
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAHA 253
L+ +S ++ S +L+ +PI + + I +L GQE++L A
Sbjct: 101 LQAVGESESTTNVYAKDLLIVS-NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCIA 159
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKW P A + P
Sbjct: 160 KKGIAKEHAKWGPAAAIEFEYDP 182
>gi|85082680|ref|XP_956964.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|7801032|emb|CAB91428.1| probable DNA-directed RNA polymerase II chain RPB3 [Neurospora
crassa]
gi|28918046|gb|EAA27728.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|336468167|gb|EGO56330.1| hypothetical protein NEUTE1DRAFT_83471 [Neurospora tetrasperma FGSC
2508]
gi|350289588|gb|EGZ70813.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 337
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 146/313 (46%), Gaps = 66/313 (21%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V+++++ D ++F+L + + AN+ RR+++AE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 17 VVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAHR 76
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ ++ L+ + D E ++ LH C G + V +L +P G
Sbjct: 77 LGLIPLNAEGIEQLLYSRDCDCDEYCEHCSVTLNLHAKC-TGDDIMQVCARDL--VPVGD 133
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP--IRPMLDITIARLGPGQEIELEA 251
+ +Q L N+P P+ I +L GQEI+L+
Sbjct: 134 RV----------------------NQVLGSPIINDPEGQGPL----ILKLRHGQEIKLQC 167
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
A KGI K H+KW+P A + P L L+ ++D +K + P D E
Sbjct: 168 IAKKGIAKEHSKWAPSAAIGFEYDPHNKLHHLDLWYEQDPKK--EWPPSEYADWE----- 220
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
E + GE ++ +R F + +E+ G + P+ + TE +K+
Sbjct: 221 ----------------EPPQEGEPFDYDAVPQR----FYYNVETAGPIPPDAIVTEGIKV 260
Query: 370 LEDKCERVITELS 382
++ K +I EL+
Sbjct: 261 IQQKLAGLIHELT 273
>gi|261403745|ref|YP_003247969.1| RNA polymerase insert [Methanocaldococcus vulcanius M7]
gi|261370738|gb|ACX73487.1| RNA polymerase insert [Methanocaldococcus vulcanius M7]
Length = 191
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 93/200 (46%), Gaps = 58/200 (29%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V I N+S + DE+LAHRLGLIPI P L DT
Sbjct: 25 SFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLL-------DT 77
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
I F L E+ GP TV +++LK
Sbjct: 78 ----EIITFTL----EKEGP-CTVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S N +I I +LG GQ I++E AV GIGK HAKW P A Y+ L E
Sbjct: 99 --------SENGEVAFKNIPIVKLGKGQRIKIECEAVPGIGKVHAKWQP-CNAVYKQLSE 149
Query: 278 I---VLLEDVEDEDAEKLVK 294
+E DAE+++K
Sbjct: 150 DEVEFFVETFGQIDAEQILK 169
>gi|289191580|ref|YP_003457521.1| RNA polymerase insert [Methanocaldococcus sp. FS406-22]
gi|288938030|gb|ADC68785.1| RNA polymerase insert [Methanocaldococcus sp. FS406-22]
Length = 191
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 85/180 (47%), Gaps = 55/180 (30%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V I N+S + DE+LAHRLGLIPI P +
Sbjct: 25 SFSNAIRRIMISEVPTYAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLI--------- 75
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
E I F L E+ GP TV +++LK
Sbjct: 76 --ESEVITFTL----EKEGP-CTVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S N +I I +LG GQ+I++E AV GIGKTHAKW P A Y+ + E
Sbjct: 99 --------SENGEVAFKNIPIVKLGRGQKIKIECEAVPGIGKTHAKWQP-CNAVYKQVAE 149
>gi|429857950|gb|ELA32787.1| RNA polymerase ii subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 340
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 134/305 (43%), Gaps = 69/305 (22%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ FDL D + AN+ RR++ AE+PT+AI+ V I NTSV+ DE +AHRLGLIP+
Sbjct: 27 VNFDLSNCDLSFANSLRRVIQAEVPTIAIDLVEIEANTSVLADEFIAHRLGLIPL----- 81
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + N++++ CE+ +VK L L + S+ +
Sbjct: 82 ---------HSKDVNSLLYSRDCDCEQYCDNCSVK------------LTLHARCSSDETM 120
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI--RPML------DITIARLGPGQEIELEAHAVKGIGK 259
K +S ++ F N P++ IA+L GQE++L A KGI K
Sbjct: 121 K------VYASDLIVDSFRQNGTVGNPVIMDPEGQGSLIAKLRKGQELKLSCIAKKGIAK 174
Query: 260 THAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQ 317
HAKW P A + P L L+ +EDA+ K A +
Sbjct: 175 EHAKWMPTAAVGFEYDPHNKLHHLDMWYEEDAKAEWPE--------------SKYAKMED 220
Query: 318 PRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
P + GE ++ V + F F +E G+L P+ + E +KI+++K +
Sbjct: 221 PP---------QEGEAFDYDA----VPEKFYFEVEGVGSLEPDQIIQEGIKIIQEKMALL 267
Query: 378 ITELS 382
+ L+
Sbjct: 268 LHMLT 272
>gi|367017650|ref|XP_003683323.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
gi|359750987|emb|CCE94112.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
Length = 311
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ TKD+++F L +D A+AN+ RRI++AE+PT+AI+ V I NT+V+ DE +AHR
Sbjct: 7 QVKIREATKDNVDFILSQVDLAMANSLRRIMMAEIPTLAIDSVEIETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ D EY + + +K ++V L +
Sbjct: 67 LGLIPLQSTDIEQLEYCRDCFCEDHCDKCSVVLTLQAIG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N +K S +L+ +PI + + I +L GQE+ ++
Sbjct: 106 ----ESESTTNVYAKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELSMK 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGISKEHAKWGPAAAIEFEYDP 182
>gi|365760141|gb|EHN01882.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401839643|gb|EJT42771.1| RPB3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 318
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD ++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDGVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|354547085|emb|CCE43818.1| hypothetical protein CPAR2_500440 [Candida parapsilosis]
Length = 317
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 132/305 (43%), Gaps = 69/305 (22%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
D ++F L +D ++ANA RR ++AE+PT+AI+ V I NTSV+ DE LAHRLGLIP++
Sbjct: 17 DRVDFVLGNVDLSVANALRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAHRLGLIPLV-- 74
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
SEN + + C+ P+ +V L L K D++
Sbjct: 75 -------SEN-----IENLKYSRDCTCDNYCPQCSVT------------LELTAKCDTDS 110
Query: 206 SS--------KPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
+ KP + S + P + ++ R + I +L QE+ L A KGI
Sbjct: 111 TMNVYASDLFKPPSPYSLGT-----PVYRDHMERGPI---ICKLRKHQELRLTCIAKKGI 162
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI-EDIGSGKKRATVA 316
K HAKWSP A + P KL T D E+ K
Sbjct: 163 AKEHAKWSPCAAIGFEYDP------------WNKLKHTDYWYEVDANEEWPKSKNCDWEE 210
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
QP E++ + + F F +E+ G+L+P + +A+K L++K
Sbjct: 211 QPDP--------------EEKFDYKAKPNDFYFDVETVGSLAPNDVVIQAIKTLQEKLAS 256
Query: 377 VITEL 381
V+ EL
Sbjct: 257 VVIEL 261
>gi|260950839|ref|XP_002619716.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
gi|238847288|gb|EEQ36752.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
Length = 307
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 30/212 (14%)
Query: 67 LQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+++D + RV + + +D ++F L G+D ++AN+ RR +++E+PT+AI+ V I NTS
Sbjct: 1 MEVDSAESGPRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTS 60
Query: 127 VIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNEL 186
V+ DE+L+HRLGLIP+ S + + C++ P +VK
Sbjct: 61 VLADELLSHRLGLIPL--------------NSEGIENLSYSRDCTCDQYCPNCSVKL--- 103
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR--PMLDITIARLGPG 244
EL + DS + F + L +P P+ I +L
Sbjct: 104 -------ELTAKCDSDSTMNVYSSDLAKFHNGSKLGDPVIRDPAHRGPL----ICKLRKH 152
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QE+ L A KGI K HAKWSP A + P
Sbjct: 153 QELRLTCIAKKGIAKEHAKWSPCAAIGFEYDP 184
>gi|401625294|gb|EJS43310.1| rpb3p [Saccharomyces arboricola H-6]
Length = 318
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N K S +L+ +PI + + I +L GQE++L
Sbjct: 106 ----ESESTTNVYGKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|429966309|gb|ELA48306.1| hypothetical protein VCUG_00142 [Vavraia culicis 'floridensis']
Length = 304
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 12/211 (5%)
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE 160
NA RR+++ E+P +AI KVL V+ +EVLAHRLGL+P+ D L +S ++
Sbjct: 31 NALRRVILEEVPAVAISKVLFHKYVGVLPEEVLAHRLGLVPVFCDALL---LSSSEEMVR 87
Query: 161 KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP--SSKPRTYTSFSSS 218
+ + ++ GG + E+ +G + ++ S + R+ + +
Sbjct: 88 SSCVRMRIRKEGSDGGVWVRSDDIEVVHFDSGRRISSWSRAMSEDRIGDEERSDEERNDA 147
Query: 219 QDLLPEFSNNPIRPML--DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
D N PM+ + I +LGP Q +++E +A KG K HAK+S V +YRM P
Sbjct: 148 ID-----GTNNSSPMIKQGVLITKLGPNQHLDVEMYATKGTAKEHAKYSTVNICYYRMHP 202
Query: 277 EIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+ L +++DA L K V I G
Sbjct: 203 ILTLTRSFKNDDAHLLRKRFKNGVIGIRKNG 233
>gi|145231693|ref|XP_001399321.1| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus niger CBS
513.88]
gi|134056224|emb|CAK37482.1| unnamed protein product [Aspergillus niger]
gi|350634315|gb|EHA22677.1| hypothetical protein ASPNIDRAFT_52135 [Aspergillus niger ATCC 1015]
Length = 338
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 126/299 (42%), Gaps = 56/299 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR++++E+PTMAI+ V + NTSV+ DE LAHRLGLIP+I
Sbjct: 24 VDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLISKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ EY + + + + ++ LH C G + V +L
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLSLHARC-TGDDIMRVYARDLV---------------- 126
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
S R + L PE N P+ I +L GQE+++ A KGI K HAK
Sbjct: 127 --VSGERANEWVGNPVILDPE-GNGPL-------ICKLRRGQELKMTCIAKKGIAKEHAK 176
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
W P + + P L V+ E K PV+ A QP
Sbjct: 177 WMPTSAIGFEYDPHNN-LRHVDYWYEEDPAKEWPVSA-----------NAGWEQPAPP-- 222
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
++ + F +ES G L P+ + + + +L+ K VI+ LS
Sbjct: 223 -----------DQPFDYDAQPNSFYIDVESIGTLEPDMIIQQGITVLQRKLASVISSLS 270
>gi|325096255|gb|EGC49565.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H88]
Length = 475
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 131/301 (43%), Gaps = 60/301 (19%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR L+AE+PT+AI+ V I +NTSV+ DE ++HRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPL----- 79
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V T +L+ G ++
Sbjct: 80 --------NSKNCDADMEYSRDCDCEGGCARCVV-TLQLQARCTGEDI------------ 118
Query: 208 KPRTYT-SFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEIELEAHAVKGIGKTH 261
+ Y D E+ NP+ ++D I +L GQEI++ A KGI K H
Sbjct: 119 -MKVYARDLVIVGDRANEWVGNPV--IMDAEGKGPVICKLRRGQEIKMTCIAKKGIAKEH 175
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AKW+P A + P L+ V+ E +K P++ + + T AQP
Sbjct: 176 AKWAPTAAVGFEYDPHNN-LKHVDYWYEEDPIKEWPIS--------ANAEWETSAQP--- 223
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+ F +ES G L P+ + + + +L+ K +I+ L
Sbjct: 224 -------------DMPFDYDAQPSTFYIDVESIGNLEPDAIVQQGITVLQRKLAEIISAL 270
Query: 382 S 382
+
Sbjct: 271 T 271
>gi|225557550|gb|EEH05836.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces capsulatus
G186AR]
Length = 475
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 130/301 (43%), Gaps = 60/301 (19%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR L+AE+PT+AI+ V I +NTSV+ DE ++HRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPL----- 79
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V T +L+ G ++
Sbjct: 80 --------NSKNCDADMEYSRDCDCEGGCARCVV-TLQLQARCTGEDI------------ 118
Query: 208 KPRTYT-SFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEIELEAHAVKGIGKTH 261
+ Y D E+ NP+ ++D I +L GQEI++ A KGI K H
Sbjct: 119 -MKVYARDLVVVGDRANEWVGNPV--IMDAEGKGPVICKLRRGQEIKMTCIAKKGIAKEH 175
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AKW+P A + P L+ V+ E +K P I + + T AQP
Sbjct: 176 AKWAPTAAVGFEYDPHNN-LKHVDYWYEEDPIKEWP--------ISANAEWETPAQP--- 223
Query: 322 TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+ F +ES G L P+ + + + +L+ K +I+ L
Sbjct: 224 -------------DMPFDYDAQPSTFYIDVESIGNLEPDAIVQQGITVLQRKLAEIISAL 270
Query: 382 S 382
+
Sbjct: 271 T 271
>gi|389638262|ref|XP_003716764.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
70-15]
gi|351642583|gb|EHA50445.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
70-15]
gi|440465143|gb|ELQ34483.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
Y34]
gi|440489706|gb|ELQ69335.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
P131]
Length = 330
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 137/329 (41%), Gaps = 71/329 (21%)
Query: 60 SMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKV 119
S G +N+ +L F + + + F+L +D ++AN+ RR+++AE+PT+AI+
Sbjct: 4 STGYENTDELGAVVKIFHADSVHVN-----FELSNVDLSLANSIRRVMLAEIPTVAIDNC 58
Query: 120 LIANNTSVIQDEVLAHRLGLIPIIV-DPRLFEYMSENDTSN--EKNTIVFKLHVLCERGG 176
I NTSV+ DE +AHRLGL+P+ Y + D E +++ +H CE
Sbjct: 59 EIKENTSVLADEFIAHRLGLVPLSARGASELVYARDCDCEQYCENCSVIITIHAKCESED 118
Query: 177 PRLTVKTNELKWLPNGSEL------PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI 230
P +K + +G + P+ T PD
Sbjct: 119 PNYVMKVYARDMVVDGRRVNQSVGTPVITDPDG--------------------------- 151
Query: 231 RPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE-DVEDEDA 289
L + + +L QE+ + A KGI K HAKW P + P L D+ E
Sbjct: 152 ---LGVILFKLRRNQEVHIRCVAKKGIAKEHAKWCPATAIGFEYDPHNKLRHLDLWYESN 208
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIF 349
K + P++ + +P + GE ++ V + F F
Sbjct: 209 AK--EEWPLS------------ENAIREPPP--------QEGEPFDYDA----VPNRFYF 242
Query: 350 TIESTGALSPETLFTEAVKILEDKCERVI 378
+E+ GAL P+ + E +++L++K ++
Sbjct: 243 DVETCGALDPDVIVQEGLRVLQEKLANLV 271
>gi|323308700|gb|EGA61941.1| Rpb3p [Saccharomyces cerevisiae FostersO]
Length = 318
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +KD+++F L +D A+AN+ RR++I E+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIXEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L
Sbjct: 67 LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N SK S +L+ +PI + + I +L GQE++L
Sbjct: 106 ----ESESTTNVYSKDLVIVS-----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|307594234|ref|YP_003900551.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
gi|307549435|gb|ADN49500.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
Length = 302
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 140/290 (48%), Gaps = 49/290 (16%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ + N+ RR+LI+++P +AI++V+I +NTSV+ DEVLAHRL ++PI D R +
Sbjct: 20 GVTPPVINSLRRVLISDVPVLAIDEVIILDNTSVLYDEVLAHRLSMMPIKTDLRKLPKIE 79
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E + E P L ++++ EL +E K
Sbjct: 80 ECEQ---------------ELVDPSLC----QVRF-----ELNVEAKE-----------P 104
Query: 214 SFSSSQDLLPEFSNNP-IRPML-DITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
S+DL S++P +RP+ DI I +L PGQ+I LEA+A G + HAKW A
Sbjct: 105 MIVYSRDLK---SDDPEVRPVYEDIPIVKLVPGQKIVLEAYAKLGRARNHAKWQ-AGLAS 160
Query: 272 YRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
Y P++ ++ +D+ ++ C +I++ GS + CT + +
Sbjct: 161 YYYYPKVSVVGKADDK-CRVCLEVCN-GALEIKEDGS----IIINDVLKCTFNK--WKTC 212
Query: 332 EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E+ + + ++ ++F +ES G + E + E +IL+ K + + EL
Sbjct: 213 EQLCPALKVDWDENKYVFWVESFGNMPVEDMVREGFRILKGKFQEFVNEL 262
>gi|145592521|ref|YP_001154523.1| RNA polymerase, insert [Pyrobaculum arsenaticum DSM 13514]
gi|166229319|sp|A4WNA4.1|RPOD_PYRAR RecName: Full=DNA-directed RNA polymerase subunit D
gi|145284289|gb|ABP51871.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum arsenaticum DSM
13514]
Length = 259
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 138/313 (44%), Gaps = 73/313 (23%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV ++ ++ ++ + G+ ++ N+ RR++I+ELP MAI+ V++ NNTSV+ DE LA R
Sbjct: 3 RVSIVEKSQLFLKAIVEGVPPSLVNSLRRVIISELPVMAIDTVVVVNNTSVMYDEFLAQR 62
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ E T T G+ L
Sbjct: 63 LGLIPLTTPLHSLPTYEECATGVADPT--------------------------ECGTRLV 96
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
L+ D + + T S D++P + DI I +L GQ I +EA+A G
Sbjct: 97 LQVTADGDVTVYSGDLT--SERPDVVPVYK--------DIPIVKLVKGQSIVIEAYAKLG 146
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK-TCPVNVFDIEDIGSGKKRATV 315
I K HAKW ATA Y P+++ ++DE ++ K CP D+ED
Sbjct: 147 IAKDHAKWQ-AATASYYYYPKVI----IKDEKCREICKEICP----DLED---------- 187
Query: 316 AQPRACTL-----CRECLRCG--EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
P CT C++ + G EWE K+ ++F +ES G + EA +
Sbjct: 188 --PVKCTFNKAWTCKDLCKGGLDVEWE--------KNKYVFWVESFGNYGVDVALKEAFR 237
Query: 369 ILEDKCERVITEL 381
IL+ K E EL
Sbjct: 238 ILKRKFEAFTEEL 250
>gi|388581049|gb|EIM21360.1| DNA-directed RNA polymerase II subunit RPB3 [Wallemia sebi CBS
633.66]
Length = 316
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 135/332 (40%), Gaps = 86/332 (25%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
RV V L + + F L +D A+ANA RRILIA+LPTMAI+ V I N+SV+ DE +AH
Sbjct: 1 MRVRVRSLESERINFVLEDVDLALANALRRILIADLPTMAIDIVNIEENSSVLVDEFIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLG++P+I T+ +K I + +C P+ +V EL
Sbjct: 61 RLGMVPLI------------STACDK-LINYNRDCVCLDHCPKCSV------------EL 95
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-------------------- 235
L K + P T S+ + + +N+ ++D
Sbjct: 96 ELNIK-----CTTPETVLVTSNHLQIKGQVANDTSGNLIDPPIGLPDNFGLPINYHQEGA 150
Query: 236 --ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV----EDEDA 289
IT+ +L GQE+ + A KGI K HAKW P + + P L +DE A
Sbjct: 151 YPITLCKLRQGQELRINCIAKKGINKEHAKWGPTSAVAFEYDPYNKLKHTHYWFEQDERA 210
Query: 290 EKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIF 349
E + +D G A+PR F F
Sbjct: 211 EWPLSANATEEAPPDDSPIGLN----AEPRT--------------------------FYF 240
Query: 350 TIESTGALSPETLFTEAVKILEDKCERVITEL 381
+E+TGAL P+ + A L++K ++ L
Sbjct: 241 DVEATGALEPKDMILLAFAELQNKLAGIVLAL 272
>gi|323454964|gb|EGB10833.1| hypothetical protein AURANDRAFT_22116 [Aureococcus anophagefferens]
Length = 324
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 113/250 (45%), Gaps = 49/250 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V V L ++ M F++ D + AN+ RR+++ E+ +MAI+ V NTSV+ DE++AHR
Sbjct: 15 QVSVRDLEENTMCFEVRDTDCSTANSLRRVMVGEVVSMAIDLVTFEENTSVVNDEIIAHR 74
Query: 137 LGLIPIIVDP--RLFEYMSENDTSNEKN--TIVFKLHVLC----------ERGGPRLTVK 182
LGL+PI R F + + D + + KLHV E+ P LTV
Sbjct: 75 LGLVPINDRDIRRRFRHTRDCDCDSHCDFCAATLKLHVSFDDRAKDLPEHEKNNP-LTVT 133
Query: 183 TNELKWLPNGSELPLETKPDSNP---SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIA 239
T +L + PD P SK TS + I +
Sbjct: 134 TLDL----------VSDDPDVAPVHFVSKREESTSQETG-----------------IALV 166
Query: 240 RLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDA----EKLVKT 295
+L GQE++L A G GK HAKW PV+ +R +PE+ + E A + +++
Sbjct: 167 KLAKGQELKLTCIAKLGCGKEHAKWIPVSKCVFRPVPEVTWDDAAVAELAPTLRDAIIQV 226
Query: 296 CPVNVFDIED 305
CP V D
Sbjct: 227 CPAGVLGYAD 236
>gi|448514979|ref|XP_003867217.1| RNA polymerase II subunit B44 [Candida orthopsilosis Co 90-125]
gi|380351556|emb|CCG21779.1| RNA polymerase II subunit B44 [Candida orthopsilosis]
Length = 317
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 126/305 (41%), Gaps = 67/305 (21%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
+D ++F L +D ++ANA RR ++AE+PT+AI+ V I NTSV+ DE LAHRLGLIP+
Sbjct: 16 EDRVDFVLGNVDLSVANALRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAHRLGLIPL-- 73
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
S T+ + C+ P+ +V L L K D++
Sbjct: 74 ------------NSENIETLKYSRDCTCDNYCPKCSVT------------LELTAKCDTD 109
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIARLGPGQEIELEAHAVKGIGKTHA 262
+ F + N +R D I +L QE+ L A KGI K HA
Sbjct: 110 STMNVYASDLFKLANG--SSLGNPVVRDQADRGSIICKLRKHQELRLTCIAKKGIAKEHA 167
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KWSP A + P KL T D A+ P++
Sbjct: 168 KWSPCAAIGFEYDP------------WNKLKHTDYWYEVD----------ASEEWPKS-- 203
Query: 323 LCRECLRCGEEW------EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
+ C +W E++ + + F F +E+ G L P + ++V L+ K
Sbjct: 204 --KNC-----DWEEQPDPEEKFDYKAKPNDFYFDVETVGNLPPNDVVLQSVNTLQTKLAS 256
Query: 377 VITEL 381
++ EL
Sbjct: 257 IVIEL 261
>gi|154274952|ref|XP_001538327.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414767|gb|EDN10129.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 576
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 134/315 (42%), Gaps = 60/315 (19%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
N ++ + ++F L +D A AN+ RR L+AE+PT+AI+ V I +NTSV+ DE +
Sbjct: 34 NEYKTTNQQAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFI 93
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+HRLGLIP+ ++ N + + CE G R V T +L+ G
Sbjct: 94 SHRLGLIPL-------------NSKNCDADMEYSRDCDCEGGCARCVV-TLQLQARCTGE 139
Query: 194 ELPLETKPDSNPSSKPRTYT-SFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEI 247
++ + Y D E+ NP+ ++D I +L GQEI
Sbjct: 140 DI-------------MKVYARDLVIVGDRANEWVGNPV--IMDAEGKGPVICKLRRGQEI 184
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
++ A KGI K HAKW+P A + P L+ V+ E +K P I
Sbjct: 185 KMTCIAKKGIAKEHAKWAPTAAVGFEYDPHNN-LKHVDYWYEEDPIKEWP--------IS 235
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + T AQP + F +ES G L P+ + + +
Sbjct: 236 ANAEWETPAQP----------------DMPFDYDAQPSTFYIDVESIGNLEPDAIVQQGI 279
Query: 368 KILEDKCERVITELS 382
+L+ K +I+ L+
Sbjct: 280 TVLQRKLAEIISALT 294
>gi|296109380|ref|YP_003616329.1| RNA polymerase insert [methanocaldococcus infernus ME]
gi|295434194|gb|ADG13365.1| RNA polymerase insert [Methanocaldococcus infernus ME]
Length = 195
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 83/180 (46%), Gaps = 55/180 (30%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V I N+S + DE+LAHRLGLIPI P
Sbjct: 25 SFSNAIRRIMISEVPTFAIEDVFIYENSSSMDDEILAHRLGLIPIKGKPAF--------- 75
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
E TI+F L E+ GP V +++LK
Sbjct: 76 --ENETILFTL----EKEGP-CVVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+N +I I +LG Q I++E AV GIGK HAKW P A Y+ L E
Sbjct: 99 --------SDNGEVAFKNIPIVKLGEKQRIKIECEAVPGIGKVHAKWQP-CNAVYKQLSE 149
>gi|452846630|gb|EME48562.1| hypothetical protein DOTSEDRAFT_162154 [Dothistroma septosporum
NZE10]
Length = 364
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 136/302 (45%), Gaps = 48/302 (15%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---V 144
++F+L A AN+ RR+++AE+PT+AI+ V I NNTSV+ DE LAHRLGL+P+ V
Sbjct: 29 IKFNLTNTSLAFANSIRRVMLAEIPTIAIDLVEIENNTSVLADEFLAHRLGLVPLSTKGV 88
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
D + D + ++V +L+V L V +L +E++
Sbjct: 89 DDMVDGRDCTCDDYCDNCSVVLRLNVANRNSDQNLKVFARDLF---------VESQAGYG 139
Query: 205 PSSKPRTYTSFSSSQDLLPEFS---NNPIR--PMLDITIARLGPGQEIELEAHAVKGIGK 259
+ SSS DL P S ++P + P+L +L GQE++L+ A +GI K
Sbjct: 140 GRGNG---ANGSSSDDLPPRGSPILSDPAQQGPLL----CQLRRGQELKLKCVAKRGIAK 192
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
HAKW+P A + P KL T D +A +P
Sbjct: 193 EHAKWAPTAAIGFEYDP------------WNKLRHTTLWYETD--------AKAEWPEPE 232
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVIT 379
E GE + + + F +E+TG + P+ + ++++L+ K +I
Sbjct: 233 KNGQWEEKPAEGEPFNYQAEPSK----FYIDLEATGVMPPDQILHSSIRVLQAKLAGIIR 288
Query: 380 EL 381
+L
Sbjct: 289 DL 290
>gi|256810443|ref|YP_003127812.1| RNA polymerase insert [Methanocaldococcus fervens AG86]
gi|256793643|gb|ACV24312.1| RNA polymerase insert [Methanocaldococcus fervens AG86]
Length = 191
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 84/180 (46%), Gaps = 55/180 (30%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V I N+S + DE++AHRLGLIPI P L
Sbjct: 25 SFSNAIRRIMISEVPTYAIEDVYIFENSSSMDDEIIAHRLGLIPIKGKPLL--------- 75
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
E I F L E+ GP TV +++LK
Sbjct: 76 --ENEIITFTL----EKEGP-CTVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S N +I I +LG GQ+I++E AV GIGK HAKW P A Y+ + E
Sbjct: 99 --------SENGEVAFKNIPIVKLGNGQKIQIECEAVPGIGKVHAKWQP-CNAVYKQISE 149
>gi|15668364|ref|NP_247160.1| DNA-directed RNA polymerase subunit D [Methanocaldococcus
jannaschii DSM 2661]
gi|2500626|sp|Q57648.1|RPOD_METJA RecName: Full=DNA-directed RNA polymerase subunit D
gi|1590937|gb|AAB98172.1| DNA-directed RNA polymerase, subunit D (rpoD) [Methanocaldococcus
jannaschii DSM 2661]
Length = 191
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 81/177 (45%), Gaps = 54/177 (30%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V I N+S + DE+LAHRLGLIPI P L
Sbjct: 25 SFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLL--------- 75
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
E I F L E+ GP TV +++LK
Sbjct: 76 --ENEVITFTL----EKEGP-CTVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRM 274
S N +I I +LG GQ I++E A+ GIGK HAKW P + ++
Sbjct: 99 --------SENGEVAFKNIPIVKLGKGQRIQIECEAIPGIGKVHAKWQPCNAVYKQI 147
>gi|261199520|ref|XP_002626161.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239594369|gb|EEQ76950.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239615533|gb|EEQ92520.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ER-3]
gi|327354685|gb|EGE83542.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ATCC 18188]
Length = 346
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 127/309 (41%), Gaps = 76/309 (24%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR L+AE+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPL----- 79
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V T L+ G ++
Sbjct: 80 --------NSKNCDADMYYSRDCDCEGGCARCVV-TLSLQARCTGEDI------------ 118
Query: 208 KPRTYT-SFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGK 259
+ Y D E+ NP+ P+ I +L GQEI++ A KGI K
Sbjct: 119 -MKVYARDLVVVGDRANEWVGNPVITDAEGKGPL----ICKLRRGQEIKMTCVAKKGIAK 173
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPR 319
HAKW+P A + P L+ V+ E +K PV+
Sbjct: 174 EHAKWAPTAAVGFEYDPHNN-LKHVDYWYEEDPIKEWPVSA------------------- 213
Query: 320 ACTLCRECLRCGEEWEKRVSIRRVKDH------FIFTIESTGALSPETLFTEAVKILEDK 373
EWE D+ F +ES G L P+ + + + +L+ K
Sbjct: 214 -----------NAEWETPTQPDMPFDYDAQPSTFYLDVESIGNLEPDAIVQQGITVLQRK 262
Query: 374 CERVITELS 382
+I+ L+
Sbjct: 263 LAEIISALT 271
>gi|83769667|dbj|BAE59802.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869849|gb|EIT79042.1| RNA polymerase [Aspergillus oryzae 3.042]
Length = 342
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 72/307 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR ++AE+PT+AI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNEL--------KWLPNGSEL 195
+ EY + + + + ++ LH C G + V +L +W+ N
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLTLHARC-TGDDIMRVYARDLVVSGERANEWVGN---- 138
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ T P+ N P+ I +L GQE+++ A K
Sbjct: 139 PVITDPE-----------------------GNGPL-------ICKLRRGQELKMTCIAKK 168
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
GI K HAKW P A + P L + + + P+ + + + + A
Sbjct: 169 GIAKEHAKWMPTAAVGFEYDPHNNL------KHVDYWYEEDPIKEWPVSHNAAWEHAAPP 222
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
QP ++F +ES G L P+ + + + +L+ K
Sbjct: 223 DQP-------------------FDYDAQPNNFYIDVESVGVLEPDMIIQQGITVLQRKLA 263
Query: 376 RVITELS 382
VI+ LS
Sbjct: 264 SVISALS 270
>gi|71001920|ref|XP_755641.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|66853279|gb|EAL93603.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|159129698|gb|EDP54812.1| RNA polymerase II subunit 3 [Aspergillus fumigatus A1163]
Length = 392
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 130/307 (42%), Gaps = 72/307 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR+++AE+PTMAI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 80 VDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNC 139
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNEL--------KWLPNGSEL 195
+ EY + D + + ++ LH C G + V +L +W+ +
Sbjct: 140 DQDVEYTRDCDCEDHCARCSVTLTLHARC-TGDEIMPVYARDLVVSGERANEWVGD---- 194
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ T P+ P+ I +L GQE+++ A K
Sbjct: 195 PVITDPE-----------------------GKGPL-------ICKLRRGQELKMTCVAKK 224
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
GI K HAKW+P A + P L V+ E +K PV+ A
Sbjct: 225 GIAKEHAKWAPTAAVGFEYDPHNN-LRHVDYWYEEDPIKEWPVS-------------ANA 270
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
A A ++ ++F +ES G L P+ + + + +L+ K
Sbjct: 271 AWEHAAPP-----------DQPFDYDAQPNNFYIDVESIGNLEPDMIIQQGIVVLQRKLA 319
Query: 376 RVITELS 382
VI+ LS
Sbjct: 320 TVISSLS 326
>gi|119190113|ref|XP_001245663.1| hypothetical protein CIMG_05104 [Coccidioides immitis RS]
gi|392868567|gb|EAS34367.2| RNA polymerase II subunit 3 [Coccidioides immitis RS]
Length = 345
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 129/308 (41%), Gaps = 74/308 (24%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---- 143
++F L +D A AN+ RR+++ E+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 25 VDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNC 84
Query: 144 -VDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
VD Y E D + I +LH C G + V +L + + + +
Sbjct: 85 DVD---MVYARECDCEGGCSRCVITLQLHAKCTGEG-VMVVYARDLVVVGDRANEWVGNP 140
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
++P+ K PI I +L GQE+++ KGI K
Sbjct: 141 VINDPAGK-------------------GPI-------ICKLRRGQEVKMTCTVKKGIAKE 174
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKWSP A + P L+ V+ E +K P++
Sbjct: 175 HAKWSPTAAVGFEYDPH-NNLKHVDYWYEEDPIKEWPISA-------------------- 213
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDH------FIFTIESTGALSPETLFTEAVKILEDKC 374
EWE V D+ F +ES G+L P+ + + + +L+ K
Sbjct: 214 ----------NAEWENPVPPDMPFDYDATPSTFYLDVESVGSLEPDAIVQQGISVLQRKL 263
Query: 375 ERVITELS 382
+I+ L+
Sbjct: 264 AEIISALT 271
>gi|444324054|ref|XP_004182667.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
gi|387515715|emb|CCH63148.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
Length = 335
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 32/204 (15%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++++ TKD+++F L ID A+AN+ RR++IAE+PT+AI+ V + NT+V+ DE ++HR
Sbjct: 7 QIKIREATKDNVDFILSNIDMALANSLRRVMIAEIPTLAIDSVEVEMNTTVLADEFISHR 66
Query: 137 LGLIPI-IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
LGLIP+ D EY + + C++ LT++
Sbjct: 67 LGLIPLQSADIDQLEYCRDCFCEDH-----------CDKCSVVLTLQA------------ 103
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELEAH 252
E++ +N +K S +LL +PI + + I +L GQE+++
Sbjct: 104 VGESESTTNVYAKDLVIVS-----NLLGRNIGHPIIQDKEGNGVLICKLRKGQELKMTCV 158
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW A Y P
Sbjct: 159 AKKGIAKEHAKWGATAAIEYEYDP 182
>gi|328853564|gb|EGG02702.1| hypothetical protein MELLADRAFT_72730 [Melampsora larici-populina
98AG31]
Length = 359
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 27/209 (12%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
+N +V+V L + F + G+D A+AN+ RR ++A+L T+AI V NTSV+ DE++
Sbjct: 17 SNLQVKVTELDERHAAFVVEGVDLALANSLRRTIMADLTTVAIHSVEFEENTSVLPDEMI 76
Query: 134 AHRLGLIPIIVDPRLFEYMS--ENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELK 187
AHRLGL+P++ + L +Y+ + D + + +I L V G L V + +L
Sbjct: 77 AHRLGLMPLMSE-DLDKYLKNWQRDCTCLSFCDDCSIELVLSVKSTLPGETLEVTSKDLV 135
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
P E D KP +T + Q + I +L GQE+
Sbjct: 136 ITPR------EDGGDRGDVGKPVQFTLPNGEQP--------------GVLITKLRKGQEV 175
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+L+ A+KGI + HAKWS V+T + P
Sbjct: 176 KLKCRAIKGIAQEHAKWSAVSTIGFEYDP 204
>gi|320033013|gb|EFW14963.1| DNA-directed RNA polymerase 2 subunit RPB3 [Coccidioides posadasii
str. Silveira]
Length = 345
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 130/306 (42%), Gaps = 70/306 (22%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---- 143
++F L +D A AN+ RR+++ E+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 25 VDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNC 84
Query: 144 -VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
VD ++ + + + I +LH C G + V +L + + + +
Sbjct: 85 DVD-MVYARECDCEGGCSRCVITLQLHAKCTGEG-VMVVYARDLVVVGDRANEWVGNPVI 142
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
++P+ K PI I +L GQE+++ KGI K HA
Sbjct: 143 NDPAGK-------------------GPI-------ICKLRRGQEVKMTCTVKKGIAKEHA 176
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KWSP A + P L+ V+ E +K P++
Sbjct: 177 KWSPTAAVGFEYDPH-NNLKHVDYWYEEDPIKEWPISA---------------------- 213
Query: 323 LCRECLRCGEEWEKRVSIRRVKDH------FIFTIESTGALSPETLFTEAVKILEDKCER 376
EWE V D+ F +ES G+L P+ + + + +L+ K
Sbjct: 214 --------NAEWENPVPPDMPFDYDATPSTFYLDVESVGSLEPDAIVQQGISVLQRKLAE 265
Query: 377 VITELS 382
+I+ L+
Sbjct: 266 IISALT 271
>gi|379005500|ref|YP_005261172.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
gi|375160953|gb|AFA40565.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
Length = 273
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 139/313 (44%), Gaps = 73/313 (23%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV ++ ++ ++ + G+ ++ N+ RR++I+ELP MAI+ V++ NNTSV+ DE LA R
Sbjct: 17 RVSIVEKSQLFLKAIVEGVPPSLVNSLRRVIISELPVMAIDTVVVVNNTSVMYDEFLAQR 76
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ E T T VL +TV + +L SE P
Sbjct: 77 LGLIPLTTPLHSLPTYEECATGVADPTECGTRLVLQVTADGDVTVYSGDL-----ASERP 131
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
D++P + DI I +L GQ I +EA+A G
Sbjct: 132 -----------------------DVVPVYK--------DIPIVKLVKGQSIVIEAYAKLG 160
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVK-TCPVNVFDIEDIGSGKKRATV 315
I K HAKW ATA Y P+++ ++DE ++ K CP D+ED
Sbjct: 161 IAKDHAKWQ-AATASYYYYPKVI----IKDEKCREICKEICP----DLED---------- 201
Query: 316 AQPRACTL-----CRECLRCG--EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
P CT C++ + G EWE K+ ++F +ES G + EA +
Sbjct: 202 --PIKCTFNKAWTCKDLCKGGLDVEWE--------KNKYVFWVESFGNYDVDVALKEAFR 251
Query: 369 ILEDKCERVITEL 381
IL+ K E EL
Sbjct: 252 ILKRKFEAFTEEL 264
>gi|452987978|gb|EME87733.1| hypothetical protein MYCFIDRAFT_129897 [Pseudocercospora fijiensis
CIRAD86]
Length = 342
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI----- 142
++F L A AN+ RR+++AE+PT+AI+ V I NNTSV+ DE LAHRLGLIP+
Sbjct: 9 IKFRLSNTSLAFANSLRRVMLAEVPTIAIDLVEIENNTSVLADEFLAHRLGLIPLSTKGV 68
Query: 143 --IVDPR---LFEY---------MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
++D R EY ++ + S+++N VF + E P +TN +
Sbjct: 69 DEMIDFRDCTCDEYCDNCSVVLRLNAVNRSSDQNLKVFARDLFVESAAPGGYNRTNGV-- 126
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
NG+ + E P +P ++ + P+ I +L GQE+
Sbjct: 127 --NGNSVD-ELPPRGHPI--------------IMDPAGHGPL-------ICQLRRGQELR 162
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
++ A KGI K HAKW+P A + P KL T D
Sbjct: 163 IKCVAKKGIAKEHAKWAPTAAIAFEYDP------------WNKLRHTTLWYETD------ 204
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
+A +P E + GE + + F +E TG + P+ + ++
Sbjct: 205 --PKAEWPEPAKNGEWEEPPQEGEPFNYDAE----PNQFYIDLEGTGVMPPDQILHSGIR 258
Query: 369 ILEDKCERVITEL 381
+L++K +I EL
Sbjct: 259 VLQNKFASIIKEL 271
>gi|238496743|ref|XP_002379607.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
gi|317146984|ref|XP_001821804.2| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus oryzae
RIB40]
gi|220694487|gb|EED50831.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
Length = 338
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 72/307 (23%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR ++AE+PT+AI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNC 83
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNEL--------KWLPNGSEL 195
+ EY + + + + ++ LH C G + V +L +W+ N
Sbjct: 84 DQDVEYTRDCECEDHCARCSVTLTLHARC-TGDDIMRVYARDLVVSGERANEWVGN---- 138
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ T P+ N P+ I +L GQE+++ A K
Sbjct: 139 PVITDPE-----------------------GNGPL-------ICKLRRGQELKMTCIAKK 168
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
GI K HAKW P A + P L + + + P+ + + + + A
Sbjct: 169 GIAKEHAKWMPTAAVGFEYDPHNNL------KHVDYWYEEDPIKEWPVSHNAAWEHAAPP 222
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
QP ++F +ES G L P+ + + + +L+ K
Sbjct: 223 DQP-------------------FDYDAQPNNFYIDVESVGVLEPDMIIQQGITVLQRKLA 263
Query: 376 RVITELS 382
VI+ LS
Sbjct: 264 SVISALS 270
>gi|119481479|ref|XP_001260768.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
gi|119408922|gb|EAW18871.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
Length = 336
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 127/302 (42%), Gaps = 62/302 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR+++AE+PTMAI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 24 VDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPL----- 78
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE R +V T L G E+
Sbjct: 79 --------NSKNCDQDVEYTRDCECEDHCARCSV-TLTLHARCTGDEI------------ 117
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
P S + E+ +P+ P+ I +L GQE+++ A KGI K
Sbjct: 118 MPVYARDLVVSGERANEWVGDPVITDPEGKGPL----ICKLRRGQELKMTCVAKKGIAKE 173
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+P A + P L V+ E +K PV+ A A A
Sbjct: 174 HAKWAPTAAVGFEYDPHNN-LRHVDYWYEEDPIKEWPVS-------------ANAAWEHA 219
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
++ ++F +ES G L P+ + + + +L+ K VI+
Sbjct: 220 APP-----------DQPFDYDAQPNNFYIDVESIGNLDPDMIIQQGIIVLQRKLATVISS 268
Query: 381 LS 382
LS
Sbjct: 269 LS 270
>gi|303322553|ref|XP_003071268.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110970|gb|EER29123.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 345
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 129/308 (41%), Gaps = 74/308 (24%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---- 143
++F L +D A AN+ RR+++ E+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 25 VDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNC 84
Query: 144 -VDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
VD Y E D + I +LH C G + V +L + + + +
Sbjct: 85 DVD---MVYARECDCEGGCSRCLITLQLHAKCTGEG-VMVVYARDLVVVGDRANEWVGNP 140
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
++P+ K PI I +L GQE+++ KGI K
Sbjct: 141 VINDPAGK-------------------GPI-------ICKLRRGQEVKMTCTVKKGIAKE 174
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKWSP A + P L+ V+ E +K P++
Sbjct: 175 HAKWSPTAAVGFEYDPH-NNLKHVDYWYEEDPIKEWPISA-------------------- 213
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDH------FIFTIESTGALSPETLFTEAVKILEDKC 374
EWE V D+ F +ES G+L P+ + + + +L+ K
Sbjct: 214 ----------NAEWENPVPPDMPFDYDATPSTFYLDVESVGSLEPDAIVQQGISVLQRKL 263
Query: 375 ERVITELS 382
+I+ L+
Sbjct: 264 AEIISALT 271
>gi|170092317|ref|XP_001877380.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647239|gb|EDR11483.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 304
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 17/204 (8%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L KD + F L +D A AN+ RR+++A++PT+AI+ V I NT+V+ DE +AHRL
Sbjct: 11 VRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAHRL 70
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
G++P++ S D + I+ L+V C + V + L +P
Sbjct: 71 GMVPLLSSNCDEAIRSTRDCTCLAGCSFCAIMLVLNVGC-HDDTTMEVTSAHLDVIPYPE 129
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIELEAH 252
E L+T SK Y P N P + P+L I ++ GQE++++
Sbjct: 130 E-NLDTSDSGEELSKRGEYFGH-------PVGKNEPGVAPIL---ICKIRKGQELKVKCV 178
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP + + P
Sbjct: 179 AKKGIAKEHAKWSPCSAVSFEYDP 202
>gi|190348772|gb|EDK41297.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 305
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 28/201 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + + +D ++F L +D ++AN+ RR ++AE+PT+AI+ V I NTSV+ DE L+HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LG+IP+ S + + + C++ P +VK EL
Sbjct: 69 LGMIPL--------------NSEGIDNLSYSRDCTCDQYCPNCSVKL----------ELT 104
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ DS S F + L P ++ R L I +L QE+ L A K
Sbjct: 105 AKCDSDSTMSVYATDLAKFHNGSKLGDPVVRDHHQRGPL---ICKLRKHQELRLTCIAKK 161
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKWSP A + P
Sbjct: 162 GIAKEHAKWSPCAAIGFEYDP 182
>gi|325968486|ref|YP_004244678.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
gi|323707689|gb|ADY01176.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
Length = 317
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 55/301 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V+VI + M+ + GI + NA RR+ I+++P +AI++V+I +NTSV+ DEVLAHRL
Sbjct: 21 VKVIEKSDLYMKAVVDGITPPLINALRRVFISDVPVLAIDEVIILDNTSVLYDEVLAHRL 80
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
+IPI D + + E + E P L ++++ EL +
Sbjct: 81 SMIPIKTDLKKLPKIEECEQ---------------ELVDPSLC----QVRF-----ELNV 116
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKG 256
E K Y S D PE +RP+ D+ I +L PGQ+I LEA+A G
Sbjct: 117 EAK------EPVVVYGRDLKSDD--PE-----VRPVYEDVPIVKLVPGQKIVLEAYAKLG 163
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS----GKKR 312
+ HAKW A+Y P++ +++ D+ + C +I+D GS +
Sbjct: 164 RARNHAKWQAGLAAYY-YYPKVSVVDKANDK-CMTCTEICN-GALEIKDDGSIMIHDVLK 220
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
T + + C + C +W+ ++ ++F +ES G + E + E +IL+
Sbjct: 221 CTFNKWKTCE--QVCSALKVDWD--------ENKYVFWVESFGNMPVEDMVREGFRILKG 270
Query: 373 K 373
K
Sbjct: 271 K 271
>gi|378756240|gb|EHY66265.1| RNA polymerase II subunit 3 [Nematocida sp. 1 ERTm2]
Length = 254
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 134/302 (44%), Gaps = 58/302 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E+ +T+D+++F L +ANA RR+++ E+PT+AI+ V N +VI +E+ R
Sbjct: 3 KIEIEEVTEDNIKFTLEDCTLGMANALRRVIMTEIPTLAIDIVQFDKNYTVIPEEMTTDR 62
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP I + +Y+ D S C+ ++ +
Sbjct: 63 LGLIP-IESSTVEKYLYPKDCS-------------CKSFCKNCSI------------SIV 96
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
L+ K D P T T S S + S N P I RLG Q I+ + AVKG
Sbjct: 97 LDVKNDG-----PTTLTVTSKSLFMEGGVSLNIGDPKHPSIITRLGHKQSIKCKCIAVKG 151
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
+GK HAKWSPVAT + DED L T + +DI S + A
Sbjct: 152 VGKKHAKWSPVATVAFGY-----------DED-NSLRHT---KFWHEKDINSEWPKPWFA 196
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIES-TGALSPETLFTEAVKILEDKCE 375
A + E + E +K F F +E G+L P + ++AVK+L+DK +
Sbjct: 197 GESA-SAQSETYKHSTEPKK----------FHFNVEVIKGSLKPMEVLSQAVKVLKDKLK 245
Query: 376 RV 377
V
Sbjct: 246 HV 247
>gi|118431575|ref|NP_148137.2| DNA-directed RNA polymerase subunit D [Aeropyrum pernix K1]
gi|150421654|sp|Q9YB53.2|RPOD_AERPE RecName: Full=DNA-directed RNA polymerase subunit D
gi|116062900|dbj|BAA80745.2| DNA-directed RNA polymerase subunit D [Aeropyrum pernix K1]
Length = 286
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 46/305 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
VEV+ L + + G NA RR +++++PTMA++ I +NT+ + DE++AHRL
Sbjct: 9 VEVVELDSLRVRLRIRGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDEMVAHRL 68
Query: 138 GLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
GL+ + + + +Y + + +E++ V
Sbjct: 69 GLVVLDSNEAVEKYRRPEECAGKEPSEEDCFV---------------------------- 100
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDIT-IARLGPGQEIELEAH 252
E+ LE + D+ + + ++ DL S+ ++P+ T + + PGQ I ++A
Sbjct: 101 EVSLEAEVDAEGETG-----RYITAGDL--SISDPQVKPVYPETPLIYVAPGQRIHVQAF 153
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A G GK H KWSP + + R P ++ ++ + + P V E + SG K
Sbjct: 154 ARLGRGKEHTKWSPASLSVLRYTPILIYDSSKAGDECLECLSAYPQVV---EALKSGGKG 210
Query: 313 ATVAQP-RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
+ V + R + R C V +R + +ESTGAL PE + A++ LE
Sbjct: 211 SLVLEGLRRTSGLRYCAETA--CRGAVEVRYDSSNLDLEVESTGALRPEKIVELAIRELE 268
Query: 372 DKCER 376
+K +R
Sbjct: 269 EKVKR 273
>gi|256089309|ref|XP_002580754.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
gi|350646602|emb|CCD58722.1| DNA-directed rna polymerase II subunit,putative [Schistosoma
mansoni]
Length = 266
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 130/319 (40%), Gaps = 67/319 (21%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + ++++F L D ++ANA RR+ IAE+PT+AI+ V I +N +++ DE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+A R+GLIP+ D + Y E E+ ++ L V C PR
Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCREFCEQCSVELTLDVCCTTDAPRHVT------ 116
Query: 188 WLPNGSELPLETKPDSNP-SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
G++L + + D P S+ +S+ + +L I ++ GQ
Sbjct: 117 ----GADL-ISSNRDVQPVPSRDADESSYVGQESIL---------------IVKMRKGQR 156
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDAEKLVKTCPVNVFDI 303
++L A A KG GK HAKW+P A + P+ L +E T P N
Sbjct: 157 LKLRAIAKKGFGKEHAKWNPTAGVGFEYDPDNALRHTFLHKPEEWPRSEYSTLPENEHQA 216
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
+GK + F F IE+ G+L P +
Sbjct: 217 PYDPTGK---------------------------------PNRFYFNIETCGSLQPRAII 243
Query: 364 TEAVKILEDKCERVITELS 382
+ +L+ K + ++ L+
Sbjct: 244 FSGLTVLKRKLQNLLDNLT 262
>gi|345565094|gb|EGX48049.1| hypothetical protein AOL_s00081g153 [Arthrobotrys oligospora ATCC
24927]
Length = 345
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 34/192 (17%)
Query: 89 EFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI----IV 144
+F L +D A AN+ RRI++AE+PT+AI+ V + NN+SV+ DE+L+HRLGL+P+ I
Sbjct: 27 DFVLSNVDLAFANSIRRIILAEVPTLAIDLVEVINNSSVLPDELLSHRLGLVPLESSNID 86
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
+ L+ + D E+ ++V L C G +TV +L + G++L
Sbjct: 87 EKMLYTRDCDCDGYCERCSVVLTLVAKC-TGDRNVTVYARDLA-VAAGAQL--------- 135
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
S + E I I +L GQE+ L+ A KGI K HAKW
Sbjct: 136 ------------GSPVITDEAQKGSI-------ICKLRKGQELNLKCIAKKGIAKEHAKW 176
Query: 265 SPVATAWYRMLP 276
P A + P
Sbjct: 177 QPCAAVAFEYDP 188
>gi|403217190|emb|CCK71685.1| hypothetical protein KNAG_0H02700 [Kazachstania naganishii CBS
8797]
Length = 326
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ +D+++F L ++ A+AN+ RR+++AE+PT+AI+ V + NT+V+ DE +AHR
Sbjct: 7 QVKIREANRDNVDFILSNVELAMANSLRRVMVAEIPTLAIDSVQVETNTTVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D EY + + +K ++V L +
Sbjct: 67 LGLIPLQSMDIERLEYCRDCFCEDHCDKCSVVLTLQAVG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N +K T S +L+ +PI + + I +L GQE+++
Sbjct: 106 ----ESESTTNVYAKDLTIVS-----NLMGRNIGHPIIQDKENNGVLICKLRKGQELKMT 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P + + P
Sbjct: 157 CIAKKGIAKEHAKWGPTSAIEFEYDP 182
>gi|296812527|ref|XP_002846601.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
gi|238841857|gb|EEQ31519.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
Length = 359
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 123/300 (41%), Gaps = 58/300 (19%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 35 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 90
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K S
Sbjct: 91 ---------SKNCDTDMLYSRDCDCEGGCQRCVIN------------LSLHAKCTSEEIM 129
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLD-----ITIARLGPGQEIELEAHAVKGIGKTHA 262
K D E+ NP+ + D I +L GQE++ KGI K HA
Sbjct: 130 KVYA-RDLVVVGDRANEWVGNPV--LTDPEGKGPIICKLRRGQEVKFNCIVKKGIAKEHA 186
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KW+P A + P L V+ E +K P+ S AQPR
Sbjct: 187 KWAPTAAVGFEYDPH-NNLRHVDYWFEEDPIKEWPL---------SANAGWETAQPR--- 233
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ + F IES G L P+ + +A+ +++ K +I+ L+
Sbjct: 234 ------------DMPFDYDAQPNTFYIDIESIGNLEPDAVVQQAIIMMQRKLAEIISGLT 281
>gi|452003608|gb|EMD96065.1| hypothetical protein COCHEDRAFT_1088202 [Cochliobolus
heterostrophus C5]
Length = 332
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 137/321 (42%), Gaps = 59/321 (18%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+D+ + ++ V L D+ I + ANA RR+++AE+PT+AI+ V + +NTS
Sbjct: 1 MDYDPDGGQINVRFLQADNQRAHFIVQNFNLETANALRRVMLAEIPTLAIDVVEVFDNTS 60
Query: 127 VIQDEVLAHRLGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT 183
V+ DE + HRLGLIP+ VD L+ + + + ++V L+ C G + V
Sbjct: 61 VLADEFVCHRLGLIPLSSKGVDDLLYSRDCDCEGYCDNCSVVLTLNAKC-TGSEVMKVYA 119
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
+L +E++P ++ +P S + I +L
Sbjct: 120 RDLV---------IESRPPNDELGRPVITDSEGTGS-----------------CIVKLRR 153
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVF 301
GQ I ++ A KGI K HAKW+P A + P L L+ +EDAEK V
Sbjct: 154 GQAINMKCIAKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDAEKEWPKDEARV- 212
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
++ G ++ + V F + +E+ G + P+
Sbjct: 213 ---NLDGGPPNP---------------------DEPFNYNAVPTRFFYDVETVGGIEPDQ 248
Query: 362 LFTEAVKILEDKCERVITELS 382
+ + ++ L+ K V+ ELS
Sbjct: 249 IVAKGIQRLQIKLAEVLKELS 269
>gi|451855909|gb|EMD69200.1| hypothetical protein COCSADRAFT_75709 [Cochliobolus sativus ND90Pr]
Length = 332
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 137/321 (42%), Gaps = 59/321 (18%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTS 126
+D+ + ++ V L D+ I + ANA RR+++AE+PT+AI+ V + +NTS
Sbjct: 1 MDYDPDGGQINVRFLQADNQRAHFIVQNFNLETANALRRVMLAEIPTLAIDVVEVFDNTS 60
Query: 127 VIQDEVLAHRLGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKT 183
V+ DE + HRLGLIP+ VD L+ + + + ++V L+ C G + V
Sbjct: 61 VLADEFVCHRLGLIPLSSKGVDDLLYSRDCDCEGYCDNCSVVLTLNAKC-TGSEVMKVYA 119
Query: 184 NELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGP 243
+L +E++P ++ +P S + I +L
Sbjct: 120 RDLV---------IESRPPNDELGRPVITDSEGTGS-----------------CIVKLRR 153
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVF 301
GQ I ++ A KGI K HAKW+P A + P L L+ +EDAEK V
Sbjct: 154 GQAINMKCIAKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDAEKEWPKDEARV- 212
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
++ G ++ + V F + +E+ G + P+
Sbjct: 213 ---NLDGGPPNP---------------------DEPFNYNAVPTRFFYDVETVGGIEPDQ 248
Query: 362 LFTEAVKILEDKCERVITELS 382
+ + ++ L+ K V+ ELS
Sbjct: 249 IVAKGIQRLQIKLAEVLKELS 269
>gi|441597761|ref|XP_004093284.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB3 [Nomascus leucogenys]
Length = 258
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 129/316 (40%), Gaps = 76/316 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAI-ANAFRRILIAELPTMAIEKVLIANNTSVIQD 130
+ N V + LT ++++F + D A+ N ++ + +AI+ V I N+SV+ D
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLALXVNLMAKLHVCFFHFLAIDWVQIDANSSVLHD 62
Query: 131 EVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERGGPRLTVKTNEL 186
E +AHRLGLIP+I D + + D + E+ ++ F L V C R + +
Sbjct: 63 EFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI 122
Query: 187 KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
S+ PR S ++D P N DI I +L GQE
Sbjct: 123 -------------------SNSPRVIPVTSRNRDNDP----NDYVEQDDILIVKLRKGQE 159
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
+ L A+A KG GK HAKW+P A + PE L DED + P +
Sbjct: 160 LRLRAYAKKGFGKEHAKWNPTAGVAFEYDPEYSEL----DEDESQ----APYD------- 204
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+GK + F + +ES G+L PET+ A
Sbjct: 205 PNGK---------------------------------PERFYYNVESCGSLRPETIVLSA 231
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+LS
Sbjct: 232 LSGLKKKLSDLQTQLS 247
>gi|392593588|gb|EIW82913.1| insert subdomain of RNA polymerase alpha subunit [Coniophora
puteana RWD-64-598 SS2]
Length = 418
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 19/205 (9%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+++ + KD + F L +D A+AN+ RR+++A++PT+AI+ V + NT+V+ DE +AHRL
Sbjct: 11 LKIREVKKDSVNFTLENVDLALANSIRRVVMADIPTVAIDMVEVQANTTVLPDEFIAHRL 70
Query: 138 GLIPIIVDPRLFEYMS-ENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
G++P +V E M D + E+ +I +L + C L V +N L+ +P
Sbjct: 71 GMVP-LVSTNCDEAMRLLRDCTCEEGCQFCSIELRLDISCHD-NRTLEVTSNHLEVVP-- 126
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIELEA 251
P + +S + S S P N+P +P+L I ++ GQE+ ++
Sbjct: 127 --FPFQDTAESLSGDE----LSKRSEDFGHPVGKNDPSAQPVL---ICKMRKGQELRIKC 177
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP + + P
Sbjct: 178 IAKKGIAKEHAKWSPCSAVAFEYDP 202
>gi|254582264|ref|XP_002497117.1| ZYRO0D15796p [Zygosaccharomyces rouxii]
gi|238940009|emb|CAR28184.1| ZYRO0D15796p [Zygosaccharomyces rouxii]
Length = 308
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ T+++++F L ++ A+AN+ RR++IAE+PT+AI+ V + NTSV+ DE +AHR
Sbjct: 7 QVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAHR 66
Query: 137 LGLIPI-IVDPRLFEYMSE--NDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ D EY + + +K ++V L +
Sbjct: 67 LGLIPLQSTDIEQLEYCRDCFCEDHCDKCSVVLTLQAIG--------------------- 105
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLDITIARLGPGQEIELE 250
E++ +N +K S +L+ +PI + + I +L GQE+ L+
Sbjct: 106 ----ESESTTNVYAKDLVIVS-----NLMGRNLGHPIIQDKEGNGVLICKLRKGQELTLK 156
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKW P A + P
Sbjct: 157 CVAKKGIAKEHAKWGPSAAIEFEYDP 182
>gi|378732910|gb|EHY59369.1| DNA-directed RNA polymerase II subunit C [Exophiala dermatitidis
NIH/UT8656]
Length = 335
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 93/208 (44%), Gaps = 39/208 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V V + +D +F L A+AN+ RR ++AE+PT+AI+ V I N+SV+ DE LAHR
Sbjct: 23 KVTVREVEQDRCDFVLQSCSLALANSLRRAILAEIPTIAIDLVDIITNSSVLPDEYLAHR 82
Query: 137 LGLIPIIVD--PRLFEYMSENDTSN---EKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
L LIP+ Y + D + E ++V +LH C R G +
Sbjct: 83 LALIPLASKGVGENLNYTRDCDRCDDHCEYCSVVLRLHARCTRPGTMMVYA--------- 133
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPE---FSNNPIRPMLDITIARLGPGQEIE 248
R T QD + + N P+ IA+L GQEI
Sbjct: 134 ------------------RDLTVADPRQDGIGQPVIRDVNGTGPL----IAKLRQGQEIH 171
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLP 276
LE A KGI K HAKW+P A + P
Sbjct: 172 LECIAKKGIAKEHAKWAPTAAVGFEYDP 199
>gi|358341556|dbj|GAA27309.2| DNA-directed RNA polymerase II subunit RPB3 [Clonorchis sinensis]
Length = 266
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 127/319 (39%), Gaps = 67/319 (21%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + ++ +F + D ++ANA RR+ IAE+PT+AI+ V I N +++ DE
Sbjct: 3 YANQPIVTLTSYNNENCKFIIEETDLSVANAIRRVCIAEVPTLAIDWVQIEENNTMLNDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+A R+GLIP+ D + Y E E+ ++ L V C PR
Sbjct: 63 FIAQRVGLIPLTSDSVVDKMAYFRECPCREFCEQCSVELTLDVCCTTDAPRHVT------ 116
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML----DITIARLGP 243
G++L SS++D+ P S +P I I ++
Sbjct: 117 ----GADL-------------------LSSNRDVQPVPSRDPDDAAYVGQESILIVKMRK 153
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDI 303
GQ ++L A A KG GK HAKW+P A + P+ L
Sbjct: 154 GQRLKLRAIAKKGFGKEHAKWNPTAGVGFEYDPDNAL----------------------- 190
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
+ + +P +E + + F F +ES G+L P+ +
Sbjct: 191 -------RHTFLQKPEEWPRSEYSTLPEDEHQAPYDPHGKPNRFFFNVESCGSLQPKNIV 243
Query: 364 TEAVKILEDKCERVITELS 382
+ +L+ K + ++ L+
Sbjct: 244 FSGLDVLKKKLQNLLDNLT 262
>gi|226490156|emb|CAX69320.1| DNA-directed RNA polymerase II subunit C [Schistosoma japonicum]
Length = 266
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 131/319 (41%), Gaps = 67/319 (21%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + ++++F L D ++ANA RR+ IAE+PT+AI+ V I N +++ DE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEENNTMLNDE 62
Query: 132 VLAHRLGLIPIIVDPRL--FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELK 187
+A R+GLIP+ D + Y E E+ ++ L V C PR
Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCREFCEQCSVELTLDVCCTTDAPRHVT------ 116
Query: 188 WLPNGSELPLETKPDSNP-SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQE 246
G++L + + D P S+ +S+ + +L I ++ GQ
Sbjct: 117 ----GADL-ISSNRDVQPVPSRDADESSYVGQESIL---------------IVKMRKGQR 156
Query: 247 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDAEKLVKTCPVNVFDI 303
++L A A KG GK HAKW+P A + P+ L +E T P N
Sbjct: 157 LKLRAIAKKGFGKEHAKWNPTAGVGFEYDPDNALRHTFLHKPEEWPRSEYSTLPENEHQA 216
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
+GK + F F IE+ G+L P+ +
Sbjct: 217 PYDPTGK---------------------------------PNRFSFNIETCGSLQPKAII 243
Query: 364 TEAVKILEDKCERVITELS 382
++ +L+ K + ++ L+
Sbjct: 244 FSSLTVLKRKLQNLLDNLT 262
>gi|146412808|ref|XP_001482375.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 305
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 28/201 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + + +D ++F L +D ++AN+ RR ++AE+PT+AI+ V I NTSV+ DE L+HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LG+IP+ S + + + C++ P VK EL
Sbjct: 69 LGMIPL--------------NSEGIDNLSYSRDCTCDQYCPNCLVKL----------ELT 104
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ DS S F + L P ++ R L I +L QE+ L A K
Sbjct: 105 AKCDSDSTMSVYATDLAKFHNGSKLGDPVVRDHHQRGPL---ICKLRKHQELRLTCIAKK 161
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKWSP A + P
Sbjct: 162 GIAKEHAKWSPCAAIGFEYDP 182
>gi|18978019|ref|NP_579376.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus DSM
3638]
gi|397652704|ref|YP_006493285.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus COM1]
gi|23822102|sp|Q8U0E4.1|RPOD_PYRFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|18893802|gb|AAL81771.1| DNA-directed RNA polymerase subunit d [Pyrococcus furiosus DSM
3638]
gi|393190295|gb|AFN04993.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus COM1]
Length = 261
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 55/306 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V+++ +D ++F L G+ + ANA RR ++ E+PT A+++V N S + DE++AHRL
Sbjct: 6 VQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 65
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
+IP+ FE + + T+ L E GP + V + +LK
Sbjct: 66 AMIPLTTPVDRFEL---DALELDDYTVTLSL----EAEGPGI-VYSGDLK---------- 107
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
+P KP NP +I I +L GQ + A+A G
Sbjct: 108 ----SDDPDVKPV-----------------NP-----NIPIVKLAEGQRLVFNAYAKLGR 141
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
GK HAKW P +Y+ + + + + E ++ +KL K + V + + T
Sbjct: 142 GKDHAKWQP-GFVYYKYYTIVHISKSIPEWKELKKLAKKRGLPV----EETEEEVLVTTI 196
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
+P E E WE+ V + +IFT+E+ G L E + + A+KIL K +R
Sbjct: 197 KPFYIPKDFEEYEGKEIWEEIVP-----NTYIFTVETNGELPVEEIVSIALKILMRKADR 251
Query: 377 VITELS 382
I+EL
Sbjct: 252 FISELQ 257
>gi|212533887|ref|XP_002147100.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072464|gb|EEA26553.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 370
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 125/304 (41%), Gaps = 65/304 (21%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D +ANA RR +IAE+PT+AI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 42 VDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPL----- 96
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ + N + + CE R +V+ L L + +
Sbjct: 97 --------NSKHCDNDMEYNRDCTCESWCSRCSVR------------LTLHARCNQADDV 136
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+ D E+ NP+ P+ IA+L GQE++L A KGI K
Sbjct: 137 MKVYSRDLVVTGDRANEWVGNPVITDPEGKGPL----IAKLIKGQELKLTCIARKGIAKE 192
Query: 261 HAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
HAKWSP + + P L L+ +ED P + I + G + QP
Sbjct: 193 HAKWSPTSAVGFEYDPHNNLRHLDYWYEED--------PAKEWPISENGKWETPNPPDQP 244
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVI 378
+ F +ES G L P+T+ + + L+ K +I
Sbjct: 245 -------------------FDYDAQPNTFYVDVESIGNLEPDTIVQQGILTLQTKLATII 285
Query: 379 TELS 382
L+
Sbjct: 286 DTLT 289
>gi|212533885|ref|XP_002147099.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072463|gb|EEA26552.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 352
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 125/304 (41%), Gaps = 65/304 (21%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D +ANA RR +IAE+PT+AI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 24 VDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPL----- 78
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ + N + + CE R +V+ L L + +
Sbjct: 79 --------NSKHCDNDMEYNRDCTCESWCSRCSVR------------LTLHARCNQADDV 118
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+ D E+ NP+ P+ IA+L GQE++L A KGI K
Sbjct: 119 MKVYSRDLVVTGDRANEWVGNPVITDPEGKGPL----IAKLIKGQELKLTCIARKGIAKE 174
Query: 261 HAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
HAKWSP + + P L L+ +ED P + I + G + QP
Sbjct: 175 HAKWSPTSAVGFEYDPHNNLRHLDYWYEED--------PAKEWPISENGKWETPNPPDQP 226
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVI 378
+ F +ES G L P+T+ + + L+ K +I
Sbjct: 227 -------------------FDYDAQPNTFYVDVESIGNLEPDTIVQQGILTLQTKLATII 267
Query: 379 TELS 382
L+
Sbjct: 268 DTLT 271
>gi|449298899|gb|EMC94913.1| hypothetical protein BAUCODRAFT_123413 [Baudoinia compniacensis
UAMH 10762]
Length = 389
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 137/321 (42%), Gaps = 53/321 (16%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + + F L A+AN+ RR ++AE+PT+AI+ V I +NTSV+ DE LAHR
Sbjct: 18 RVTIRSANDTTISFVLQHTSLALANSLRRTILAEIPTIAIDLVEIESNTSVLPDEFLAHR 77
Query: 137 LGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
+GLIP+ V+ + D + ++V +L+V L V +L
Sbjct: 78 MGLIPLSTRDVEDMFYTRDCACDEFCDNCSVVLQLNVANRNLDHNLKVFARDLT------ 131
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNN-PIR--PMLDITIARLGP------- 243
T+ D P + PR+ ++ L + P R P+L + + GP
Sbjct: 132 ----VTRVDGTPITDPRSTAHLTNGAAGLHSHAEELPPRGFPIL-MDPEQKGPLLCSLRK 186
Query: 244 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV--EDEDAEKLVKTCPVNVF 301
GQ+++L A KGI K HAKW+P A + P L +EDA+K +
Sbjct: 187 GQDLKLRCIAKKGIAKEHAKWAPTAAIGFEYDPHNKLRHTTLWHEEDAKKEWPESKNREW 246
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
+ E G+ VA+P + F +E TG + P+
Sbjct: 247 E-EPPQEGQNFDFVAEP--------------------------EQFFLNLEGTGVMPPDG 279
Query: 362 LFTEAVKILEDKCERVITELS 382
+ ++ L+ K VI +L+
Sbjct: 280 VVHAGIRTLQQKLATVIQQLA 300
>gi|242214615|ref|XP_002473129.1| predicted protein [Postia placenta Mad-698-R]
gi|220727790|gb|EED81699.1| predicted protein [Postia placenta Mad-698-R]
Length = 265
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 32/205 (15%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L KD + F + +D A+AN+ RR+++A++PT+AI+ V I NT+V+ DE +AHRL
Sbjct: 6 VRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAHRL 65
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS-ELP 196
G+IP++ +SN C+ G R T L W + EL
Sbjct: 66 GMIPLV-------------SSN------------CDEGM-RYTRDCTCLSWCQFCAVELT 99
Query: 197 LETK-PDSNPSSKPRTYTSFSSSQDLLPEFSNNPI---RPMLD-ITIARLGPGQEIELEA 251
L D + S PE +P+ P + + IA++ GQE+ L
Sbjct: 100 LHVACHDGVAMDVTSMHLDVSDELAKRPENFGHPVGKFDPSVSPVLIAKIRKGQELRLRC 159
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLP 276
A KG+ K HAKWSP + + P
Sbjct: 160 IAKKGVAKEHAKWSPCSAVAFEYDP 184
>gi|402217101|gb|EJT97183.1| hypothetical protein DACRYDRAFT_59476 [Dacryopinax sp. DJM-731 SS1]
Length = 257
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 217 SSQDLLPEF-SNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
+Q LP++ + P DI + +L GQE+ +E H VK G+ HAK+SPVATA R+L
Sbjct: 58 GAQAALPDYLAEAPSVAKPDIILVKLRRGQELNIEMHCVKSCGRDHAKYSPVATATSRLL 117
Query: 276 PEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR-----ATVAQPRACTLCRECLRC 330
P + + + + ++ K ++ F IGS + + V R T+ R
Sbjct: 118 PYVRIFKSIPEQLQAKFTQS-----FSPGVIGSRRNKQWEWEVFVKDARKDTMSRNVF-L 171
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E+E V + RV+D F+FT+ES G ++P + EA+ + K V L
Sbjct: 172 YPEFEGAVKLTRVRDRFLFTVESAGQMAPNAILPEAIAVFTRKLRTVSKAL 222
>gi|255729262|ref|XP_002549556.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132625|gb|EER32182.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 327
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 127/307 (41%), Gaps = 68/307 (22%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII- 143
KD ++F L +D ++AN+ RR ++AE+PT++I+ V I NTSV+ DE L+HRLGLIP++
Sbjct: 18 KDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIEKNTSVLADEFLSHRLGLIPLVS 77
Query: 144 --VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
+ + D K ++ +L C ++ LK GS+L
Sbjct: 78 EGIKDLTYSRDCTCDNYCTKCSVTLQLLASCTAETTMNVYASDLLKTTHTGSKLGDPVFR 137
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
D PR + PI I +L QE+ L A KGI K H
Sbjct: 138 D------PR---------------NRGPI-------ICKLRKDQELALTCIAKKGIAKEH 169
Query: 262 AKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRAC 321
AKWSP A + P KL T D E P++
Sbjct: 170 AKWSPCAAVGFEYDP------------WNKLKHTDYWYEVDAES----------EWPKS- 206
Query: 322 TLCRECLRCGEEWEK------RVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCE 375
R C +WE+ + + + F F +E+ G L P + A++ L++K
Sbjct: 207 ---RNC-----DWEEAPDPEAKFDYKAKPNTFYFDVETVGNLPPNEVVVRAIETLQNKLG 258
Query: 376 RVITELS 382
+ EL+
Sbjct: 259 ALTVELN 265
>gi|68478788|ref|XP_716556.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|68478891|ref|XP_716500.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438170|gb|EAK97505.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438227|gb|EAK97561.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|238881321|gb|EEQ44959.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida albicans
WO-1]
Length = 318
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + KD + F L +D A+AN+ RR +IAE+PT+AI+ V I NTSV+ DE L+HRL
Sbjct: 11 VTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSHRL 70
Query: 138 GLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
GLIP++ +D + D K ++ +L C ++ K NGS+
Sbjct: 71 GLIPLVSEGIDNLTYSRDCTCDNYCSKCSVTLQLIANCATESTMNVYASDLQKMSHNGSK 130
Query: 195 L--PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
L P+ P + P+ I +L QE+ L
Sbjct: 131 LGDPVIRDPQ-----------------------ARGPL-------ICKLRKHQELSLTCI 160
Query: 253 AVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K HAKWSP A + P
Sbjct: 161 AKKGIAKEHAKWSPTAAIGFEYDP 184
>gi|241954894|ref|XP_002420168.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223643509|emb|CAX42390.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 313
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 35/197 (17%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII- 143
KD + F L +D A+AN+ RR +IAE+PT+AI+ V I NTSV+ DE L+HRLGLIP++
Sbjct: 18 KDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSHRLGLIPLVS 77
Query: 144 --VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL--PLET 199
+D + D K ++ +L C ++ K NGS+L P+
Sbjct: 78 EGIDNLTYSRDCTCDNYCSKCSVTLQLVANCATESTMNVYASDLQKMSHNGSKLGDPVIR 137
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
P + P+ I +L QE+ L A KGI K
Sbjct: 138 DPQ-----------------------ARGPL-------ICKLRKHQELSLTCIAKKGIAK 167
Query: 260 THAKWSPVATAWYRMLP 276
HAKWSP A + P
Sbjct: 168 EHAKWSPTAAIGFEYDP 184
>gi|402076627|gb|EJT72050.1| DNA-directed RNA polymerase II subunit RPB3 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 340
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 132/330 (40%), Gaps = 81/330 (24%)
Query: 64 DNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIAN 123
DN+ +L + + +R+ F+L +D ++ANA RR+++AE+PT+AI+ I
Sbjct: 8 DNADELGATVKIYHADSVRVN-----FELSNVDLSLANAVRRVMLAEIPTIAIDNCEIKE 62
Query: 124 NTSVIQDEVLAHRLGLIPIIVDPRL---FEYMSENDTSN--EKNTIVFKLHVLCERGGPR 178
NTSV+ DE +AHRLGL+P+ D R Y + D + ++ +++ CE P
Sbjct: 63 NTSVLADEFIAHRLGLVPL--DARGVADLNYSRDCDCEQYCDNCSVTIEINARCEVDDPG 120
Query: 179 LTVKTNELK-WL----PNGS-ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRP 232
K W+ PN P+ T PD N
Sbjct: 121 HVSKFYAKDLWVVGNPPNKYVGKPVITDPDEN---------------------------- 152
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL----LEDVEDED 288
I + +L GQEI + A KGI K HAKW P + P L L +D D
Sbjct: 153 --GIILFKLRYGQEIRIRCIAKKGIAKEHAKWCPATAIGFEYDPHNRLRHLDLWYEKDPD 210
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
E + +R Q GE R V + F
Sbjct: 211 EEW-------------PLSKNAEREPAPQE------------GE----RFDYDAVPNRFY 241
Query: 349 FTIESTGALSPETLFTEAVKILEDKCERVI 378
F +E+ G L P+ + E +K L++K VI
Sbjct: 242 FDVETAGNLPPDAIVQEGIKTLQEKLAGVI 271
>gi|149237498|ref|XP_001524626.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452161|gb|EDK46417.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 336
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 110/249 (44%), Gaps = 54/249 (21%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
KD + F L G+D ++AN+ RR ++AE+PT+AI+ V I NTSV+ DE LAHRLGLIP+
Sbjct: 16 KDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAHRLGLIPL-- 73
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
D+ +N +++ C+ + +V L L K DS+
Sbjct: 74 -----------DSQGIEN-LLYSRDCACDNYCSKCSVT------------LELTAKCDSD 109
Query: 205 PSSKPRTYTSFSSSQDLL--PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
+ + +LL P + R L I +L QEI L A KGI K HA
Sbjct: 110 STMNVCASDLLKLNTELLGKPIIRDPQNRGPL---ICKLRRHQEIRLTCIAKKGIAKEHA 166
Query: 263 KWSPVATA---------------WYRM-------LPEIVLLEDVEDEDAEKLVKTCPVN- 299
KWSP A WY + E LE+ D DA+ P
Sbjct: 167 KWSPCAAVGFEYDPWNKLKHTDYWYEVDAAEEWPKSENCRLEEAPDPDAKFDYNAVPSKF 226
Query: 300 VFDIEDIGS 308
FD+E +G+
Sbjct: 227 YFDVETVGN 235
>gi|344232873|gb|EGV64746.1| insert subdomain of RNA polymerase alpha subunit [Candida tenuis
ATCC 10573]
Length = 305
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 126/314 (40%), Gaps = 83/314 (26%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII- 143
+D + F L +D A+AN+ RR ++AE+PT+AI+ V I NTSV+ DE +AHRLGLIP++
Sbjct: 20 RDHVNFVLKNVDLAVANSVRRTMMAEVPTLAIDLVEIDVNTSVLADEFIAHRLGLIPLVS 79
Query: 144 --VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKP 201
+D + D K ++ +L C+ + + ++L NGS L
Sbjct: 80 DSIDELSYSRDCTCDQYCNKCSVKLELAAKCDTDST-MNIYASDLAKFQNGSTLGDPVIR 138
Query: 202 DSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTH 261
D+ I +L QE+ + A KGI K H
Sbjct: 139 DAQGKGS----------------------------LICKLRKHQELRITCIAKKGIAKEH 170
Query: 262 AKWSPVATAWYRMLP-------EIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
AKWSP + + P + E VEDE
Sbjct: 171 AKWSPCSAVGFEYDPWNKLKHTDYWYEESVEDE--------------------------- 203
Query: 315 VAQPRACTLCRECLRCGEEWEKR------VSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
P++ C EWE+ ++F IE+ G+LSP +F ++++
Sbjct: 204 --WPKS----ENC-----EWEEAPDPEAPFDYNARANNFYVDIETIGSLSPNDVFVKSLE 252
Query: 369 ILEDKCERVITELS 382
L+ K + EL+
Sbjct: 253 TLQLKLAGISVELN 266
>gi|242779067|ref|XP_002479367.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
gi|218722986|gb|EED22404.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
Length = 353
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 123/304 (40%), Gaps = 65/304 (21%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D +ANA RR +IAE+PT+AI+ V + NTSVI DE LAHRLGLIP+
Sbjct: 24 VDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAHRLGLIPL----- 78
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ + N + + CE R +V+ L L + +
Sbjct: 79 --------NSKHCDNDMEYNRDCTCESWCSRCSVR------------LTLHARCNQADDV 118
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+ D E+ NP+ P+ IA+L GQE++L A KGI K
Sbjct: 119 MKVYSRDLVVTGDRANEWVGNPVITDPEGKGPL----IAKLIKGQELKLTCIARKGIAKE 174
Query: 261 HAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
HAKWSP + + P L L+ +ED P + I + G + QP
Sbjct: 175 HAKWSPTSAVGFEYDPHNNLKHLDYWYEED--------PAKEWPISENGKWETPNPPDQP 226
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVI 378
F +ES G L P+ + + + L+ K +I
Sbjct: 227 -------------------FDYDAQPHTFYVDVESIGNLEPDAIVQQGILTLQTKLATII 267
Query: 379 TELS 382
L+
Sbjct: 268 DTLT 271
>gi|315425723|dbj|BAJ47379.1| DNA-directed RNA polymerase subunit D [Candidatus Caldiarchaeum
subterraneum]
gi|343484524|dbj|BAJ50178.1| DNA-directed RNA polymerase subunit D [Candidatus Caldiarchaeum
subterraneum]
Length = 215
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 62/252 (24%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ + D+ + +ANA RR++I E+PTMA+E++L+ N+S + +EVLAHR+ LIP I D
Sbjct: 9 ESITLDVTDLPHPLANALRRMIIREVPTMAVEEILVIENSSPMTNEVLAHRISLIPFITD 68
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
F E + CE+ R ++ +
Sbjct: 69 LDNFNVAEECSCQSRLG---------CEKCVVRFVLR--------------------AEA 99
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
+ +P T S +D+ PE + + P +I I L P Q+IELE + G G+ HAKW
Sbjct: 100 ADQPVTVYS----RDIKPERHDTKVAPFDGNIPIVVLAPRQKIELELYVRLGRGRKHAKW 155
Query: 265 -SPVATAW------------YRMLP--EIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
S +AT + Y LP +VL +A ++VKT IE+IG+G
Sbjct: 156 QSGIATLYQENSRWLLYVESYGFLPPRRMVL-------EAARIVKT------RIEEIGAG 202
Query: 310 KKRATVAQPRAC 321
K +P++
Sbjct: 203 LKELMAREPQSA 214
>gi|380478665|emb|CCF43467.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 339
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 130/299 (43%), Gaps = 75/299 (25%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ FDL D + AN+ RR++ AE+P +AI+ V I NTSV+ DE +AHRLGLIP+
Sbjct: 27 VNFDLSNCDLSFANSLRRVIQAEVPVIAIDLVEIEANTSVLADEFIAHRLGLIPL----- 81
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + N++++ CE+ +VK L L + S+ +
Sbjct: 82 ---------QSKDVNSLLYTRDCDCEQYCDNCSVK------------LTLHARCSSDETM 120
Query: 208 KPRTYTSFSSSQDLLPE------FSNNPIRPMLD-----ITIARLGPGQEIELEAHAVKG 256
K Y S DL+ + NP+ +LD I +L GQE+++ A KG
Sbjct: 121 K--VYAS-----DLIVDSFRQNGTVGNPV--ILDPEGQGSLICKLRKGQELKISCIAKKG 171
Query: 257 IGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
I K HAKW P + + P L L+ +EDA+ K A
Sbjct: 172 IAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFEEDAKAEWPE--------------SKYAK 217
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ P + GE ++ V F F +E G+L P+ + E +KIL++K
Sbjct: 218 MEDPP---------QEGEPFDYDA----VPSKFYFEVEGVGSLEPDQIIQEGIKILQEK 263
>gi|448089925|ref|XP_004196939.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|448094289|ref|XP_004197970.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|359378361|emb|CCE84620.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|359379392|emb|CCE83589.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
Length = 308
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 92/201 (45%), Gaps = 28/201 (13%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V + + KD ++F L D A ANA RR+++AE+PT+AI+ V I NTSV+ DE L+HR
Sbjct: 12 QVTIRQTDKDHVDFILKDADLATANALRRVMLAEVPTLAIDLVDIDVNTSVLADEFLSHR 71
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELP 196
LGLIP+ S + + C++ +VK EL
Sbjct: 72 LGLIPL--------------NSEGIENLSYSRDCTCDQYCANCSVKL----------ELT 107
Query: 197 LETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ DS + F + L P ++ R L I +L QE+ L A K
Sbjct: 108 AKCDTDSTMNVYASDLAKFHNGSKLGDPVIRDSQQRGPL---ICKLRKHQELRLTCIAKK 164
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKWSP A + P
Sbjct: 165 GIAKEHAKWSPCAAIGFEYDP 185
>gi|213405883|ref|XP_002173713.1| DNA-directed RNA polymerase II subunit RPB3 [Schizosaccharomyces
japonicus yFS275]
gi|212001760|gb|EEB07420.1| DNA-directed RNA polymerase II subunit RPB3 [Schizosaccharomyces
japonicus yFS275]
Length = 308
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 131/312 (41%), Gaps = 63/312 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + + K+ +EF L D ++AN+ RR+++ E+PT+AI+ V I+ NTSV+ DE LAHRL
Sbjct: 7 VTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAHRL 66
Query: 138 GLIPIIVD------PRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
G+IP+ + P EY D K ++ L+ C G + V +L
Sbjct: 67 GMIPLNSNNIDEPPPVGLEYTRNCDCDQYCNKCSVELSLNAKCTGDG-TMEVYARDL--- 122
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
DSN S L S+ P+ I +L QE+ L
Sbjct: 123 ----------VVDSN---------STLGQPVLADARSHGPL-------ILKLRKEQEVSL 156
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
A KGI K HAKWSP A + P KL T D ++
Sbjct: 157 RCIAKKGIAKEHAKWSPTAAVSFEYDP------------WNKLKHTDYWFETDADEEWPK 204
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
K A +P R GE ++ R+ F +E G++ P + + +++
Sbjct: 205 SKNADWEEPP---------REGETFDYNAQPRK----FYMEVEGVGSIPPNQIILQGIRV 251
Query: 370 LEDKCERVITEL 381
L++K ++ +L
Sbjct: 252 LQEKLAVLVRDL 263
>gi|310794498|gb|EFQ29959.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 339
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 130/299 (43%), Gaps = 75/299 (25%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
+ FDL D + AN+ RR++ AE+P +AI+ V I NTSV+ DE +AHRLGLIP+
Sbjct: 27 VNFDLSNCDLSFANSLRRVIQAEVPVIAIDLVEIEANTSVLADEFIAHRLGLIPL----- 81
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S + N++++ CE+ +VK L L + S+ +
Sbjct: 82 ---------QSKDVNSLLYTRDCDCEQYCDNCSVK------------LTLHARCSSDDTM 120
Query: 208 KPRTYTSFSSSQDLLPE------FSNNPIRPMLD-----ITIARLGPGQEIELEAHAVKG 256
K Y S DL+ + NP+ +LD I +L GQE+++ A KG
Sbjct: 121 K--VYAS-----DLIVDSFRQNGTVGNPV--ILDPEGQGSLICKLRKGQELKISCIAKKG 171
Query: 257 IGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
I K HAKW P + + P L L+ +EDA+ K A
Sbjct: 172 IAKEHAKWMPTSAVGFEYDPHNKLHHLDMWYEEDAKAEWPD--------------SKYAK 217
Query: 315 VAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ P + G+ ++ V F F +E G+L P+ + E +KIL++K
Sbjct: 218 MEDPP---------QEGDPFDYDA----VPGKFYFEVEGVGSLEPDQIIQEGIKILQEK 263
>gi|453089708|gb|EMF17748.1| insert subdomain of RNA polymerase alpha subunit [Mycosphaerella
populorum SO2202]
Length = 362
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 138/330 (41%), Gaps = 77/330 (23%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++ + T + F L A+AN+ RR+++AE+PT+AI+ I NTSV+ DE LAHR
Sbjct: 17 KITIRETTDKSIRFRLSNTSLALANSVRRVMLAEVPTIAIDLCEIEANTSVLADEFLAHR 76
Query: 137 LGLIPI-------IVDPR---LFEY---------MSENDTSNEKNTIVFKLHVLCERGGP 177
LGLIP+ +VD R EY ++ + ++++N VF + E G P
Sbjct: 77 LGLIPLSTKGVDEMVDFRDCTCDEYCDNCSVVLRLNAANRNSDQNLKVFARDLFVESGAP 136
Query: 178 RLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS---NNPI--RP 232
+ NG + +SS DL P + +P P
Sbjct: 137 GVATYNRS-----NG--------------------VNGTSSDDLPPRGAPIIGDPAGQGP 171
Query: 233 MLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
+ I +L GQE+ ++ A KGI K HAKW+P A + P KL
Sbjct: 172 L----ICQLRRGQELRIKCIAKKGIAKEHAKWAPTAAIGFEYDP------------WNKL 215
Query: 293 VKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIE 352
T D +A +P+ E + GE ++ +F F +E
Sbjct: 216 KHTTLWYETD--------AKAEWPEPQKNGDWEEPPQEGEPFDYAAE----PTNFYFELE 263
Query: 353 STGALSPETLFTEAVKILEDKCERVITELS 382
TG + P+ + +++L+ K +I +L
Sbjct: 264 GTGVMPPDQILHSGIRVLQAKLAGIIRDLG 293
>gi|19075824|ref|NP_588324.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe 972h-]
gi|13124820|sp|P37382.2|RPB3_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide
gi|256599717|pdb|3H0G|C Chain C, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599729|pdb|3H0G|O Chain O, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2465184|dbj|BAA22566.1| polymerase II third largest subunit (subunit 3)
[Schizosaccharomyces pombe]
gi|3790255|emb|CAA21444.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 297
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 135/311 (43%), Gaps = 59/311 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ + ++K+ ++F L A+AN+ RR+++AE+PT+AI+ V I NTSV+ DE LAHR
Sbjct: 6 HITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHR 65
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LG+IP+ D+SN + + + C++ P+ +V
Sbjct: 66 LGMIPL-------------DSSNIDEPPPVGLEYTRNCDCDQYCPKCSV----------- 101
Query: 193 SELPLETKPDSNPSSK--PRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
EL L K + + R S+S P ++ R L I +L QEI L
Sbjct: 102 -ELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPL---ICKLRKEQEISLR 157
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
A KGI K HAKWSP + + P KL T D +
Sbjct: 158 CIAKKGIAKEHAKWSPTSAVAFEYDP------------WNKLQHTDYWFENDADAEWPKS 205
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
K A +P R GE + + RR F +ES G++ P + + ++IL
Sbjct: 206 KNADWEEPP---------REGEPFNFQEEPRR----FYMDVESVGSIPPNEIMVQGLRIL 252
Query: 371 EDKCERVITEL 381
++K ++ +L
Sbjct: 253 QEKLAVLVRDL 263
>gi|254573314|ref|XP_002493766.1| RNA polymerase II third largest subunit B44, part of central core
[Komagataella pastoris GS115]
gi|238033565|emb|CAY71587.1| RNA polymerase II third largest subunit B44, part of central core
[Komagataella pastoris GS115]
gi|328354411|emb|CCA40808.1| DNA-directed RNA polymerase II subunit RPB3 .5 [Komagataella
pastoris CBS 7435]
Length = 304
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 131/309 (42%), Gaps = 56/309 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V +I D++E L ++ ++AN+ RR ++AE+PT+AI+ V I NTSV+ DE ++HR
Sbjct: 6 KVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEFISHR 65
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
LGLIP +V + E D + E ++V +L E V +
Sbjct: 66 LGLIP-LVSEDVEEMKYSRDCTCEDYCDECSVVLELSARHEGEEGTTDVYS--------- 115
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S L + P + +P + I + +L QE+ +
Sbjct: 116 SSLIKVSGPGNLNVGEPVRRDDYDQG-----------------ILLCKLRNHQELNIRCI 158
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
A KGI K HAKWSP + + P KL T D + K
Sbjct: 159 AKKGIAKEHAKWSPCSAIAFEYDPH------------NKLKHTDFWFEVDAKKEWPDSKY 206
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
AT +P + GE ++ + R F T+E+TG+L +F+ +K L++
Sbjct: 207 ATWEEPP---------KPGEVFDYKAKPNR----FYMTVETTGSLKANQVFSRGIKTLQE 253
Query: 373 KCERVITEL 381
K V+ EL
Sbjct: 254 KLANVLFEL 262
>gi|388522223|gb|AFK49173.1| unknown [Lotus japonicus]
Length = 237
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 9/148 (6%)
Query: 236 ITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED----EDAEK 291
I I +L GQE+ L A A KGIGK HAKWSP AT + PEI + +D+ + ++ ++
Sbjct: 70 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHINDDLMETLTLKEKKE 129
Query: 292 LVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEK--RVSIRRVKDHFIF 349
V++CP +VFDI+ + ++ V + + E ++ E K V I +D FIF
Sbjct: 130 WVESCPTHVFDID---ANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIF 186
Query: 350 TIESTGALSPETLFTEAVKILEDKCERV 377
+E+TGA+ L A++IL+ K + V
Sbjct: 187 IVETTGAVKASQLVLNAIEILKQKLDAV 214
>gi|326469671|gb|EGD93680.1| RNA polymerase II subunit 3 [Trichophyton tonsurans CBS 112818]
gi|326478798|gb|EGE02808.1| RNA polymerase II subunit 3 [Trichophyton equinum CBS 127.97]
Length = 351
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 123/302 (40%), Gaps = 62/302 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K +
Sbjct: 81 ---------SKNCDTDMLYSRDCDCEAGCARCVIN------------LSLHAKCTTEDIM 119
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
K D E+ NP+ P+ I +L GQE++ KGI K
Sbjct: 120 KVYA-RDLVVVGDRANEWVGNPVVTDPEGKGPI----ICKLRRGQEVKFNCIVKKGIAKE 174
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+P A + P L V+ E VK P+ S AQP+
Sbjct: 175 HAKWAPTAAVGFEYDPH-NNLRHVDYWFEEDPVKEWPL---------SANAGWETAQPK- 223
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
+ + + F IES G L P+ + + + +++ K +I+
Sbjct: 224 --------------DLPFNYDATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKLAEIISG 269
Query: 381 LS 382
L+
Sbjct: 270 LT 271
>gi|352682847|ref|YP_004893371.1| DNA-directed RNA polymerase subunit D [Thermoproteus tenax Kra 1]
gi|350275646|emb|CCC82293.1| DNA-directed RNA polymerase subunit D [Thermoproteus tenax Kra 1]
Length = 281
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 124/288 (43%), Gaps = 64/288 (22%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G ++ N+ RR +I+E+P A+++V+I NNTS + DE+LAHR+GLIP+ F +
Sbjct: 20 GAKPSLVNSIRRAVISEVPVFAVDQVIIINNTSSMYDEMLAHRIGLIPLTTPLGEFPKIE 79
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E CE G L + +E + Y
Sbjct: 80 E-----------------CESG-------------LVDPAECTVRLTLQVTAEEARTVYA 109
Query: 214 SFSSSQDLLPEFSN-NPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 272
DL+ E P+ P ++ I +L GQ I +EA+A G + HAKW A Y
Sbjct: 110 G-----DLISEHPGVKPVYP--EMPIVKLAKGQSISIEAYARLGRAREHAKWQ-AGLATY 161
Query: 273 RMLPEIVLLEDVEDEDAEKLVK-TCPVNVFDIEDIGSGKK-----RATVAQPRAC-TLCR 325
P++ +++D DE+ K+ K CP + G+ K + T + + C +LC
Sbjct: 162 YYFPKVTIVKD--DENCLKICKNVCP------KAFGNTLKEVDLYQCTFGKLKTCESLCN 213
Query: 326 ECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
L +W+K +I ES G +S + E ++L+ K
Sbjct: 214 GILIV--DWDKY--------KYIMMFESYGNMSINDMLKETFRVLKVK 251
>gi|322369534|ref|ZP_08044099.1| DNA-directed RNA polymerase subunit D [Haladaptatus paucihalophilus
DX253]
gi|320551266|gb|EFW92915.1| DNA-directed RNA polymerase subunit D [Haladaptatus paucihalophilus
DX253]
Length = 248
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 130/309 (42%), Gaps = 70/309 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+F VE I + F + + A AN RR +IA++PT++I+ + + N+SV+ DE
Sbjct: 1 MTEDFDVEFIDRGERKARFLVRNVTPAFANGIRRAMIADVPTLSIDTLRVIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ RLGL+P+ P FE E +T+ L V
Sbjct: 61 QIGLRLGLVPLTTPPGEFE---------EGDTVTLSLDV--------------------- 90
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELE 250
S P T+FS DL+ S+ ++P D I I L GQ +ELE
Sbjct: 91 -----------SGPG------TAFSG--DLIS--SDEMVQPADDNIPIIDLKEGQRLELE 129
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEKLVKTCPVNVFDIEDIGS 308
A AV G GK HAK YR L + ++ D ++ E+ ++++ IED G
Sbjct: 130 ADAVLGSGKDHAKHQGGVAVGYRHLQRVEVVGDRDEFGEEEPRILRGT------IEDDGE 183
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
T + K V + V + F+F +ES G+ + E L T+AV
Sbjct: 184 LVPTETFDHDLSQRFPG----------KEVEVHDVPNAFVFDVESDGSFTVEELVTQAVD 233
Query: 369 ILEDKCERV 377
L ++ + +
Sbjct: 234 SLTERADEL 242
>gi|327303580|ref|XP_003236482.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
gi|326461824|gb|EGD87277.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
Length = 351
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 123/302 (40%), Gaps = 62/302 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K +
Sbjct: 81 ---------SKNCDTDMLYSRDCDCEAGCARCVIN------------LSLHAKCTTEEIM 119
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
K D E+ NP+ P+ I +L GQE++ KGI K
Sbjct: 120 KVYA-RDLVVVGDRANEWVGNPVVTDPEGKGPI----ICKLRRGQEVKFNCIVKKGIAKE 174
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+P A + P L V+ E VK P+ S AQP+
Sbjct: 175 HAKWAPTAAVGFEYDPH-NNLRHVDYWFEEDPVKEWPL---------SANAGWETAQPK- 223
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
+ + + F IES G L P+ + + + +++ K +I+
Sbjct: 224 --------------DLPFNYDATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKLAEIISG 269
Query: 381 LS 382
L+
Sbjct: 270 LT 271
>gi|320583437|gb|EFW97650.1| DNA-directed RNA polymerase II subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 311
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 131/321 (40%), Gaps = 81/321 (25%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V + + +D+++F L +D ++AN+ RR ++AE+PT+AI+ V I NTSV+ DE L+HR
Sbjct: 6 QVTIRKAGRDEVDFILGDVDLSLANSLRRTMLAEVPTLAIDLVEILVNTSVLADEFLSHR 65
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGL+P+ +D + + EK ++ +L C+ + V ++ L + +
Sbjct: 66 LGLVPLESEDIDQLKYTRDCTCEDHCEKCSVTLELRAHCDS-DETMNVYSSHLTIVSPNT 124
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
L L T +P K + + +L Q++ + A
Sbjct: 125 GLNLGTPVVRDPERK--------------------------GVLLCKLKKHQQLHVRCVA 158
Query: 254 VKGIGKTHAKWSPVATAWYRMLP-------EIVLLEDVEDEDAEKLVKTCPVNVFDIEDI 306
KGI K HAKWSP A + P + E VE+E
Sbjct: 159 KKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDYWFEESVEEE------------------- 199
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWE------KRVSIRRVKDHFIFTIESTGALSPE 360
P++ EWE +R + F +E+TG L P
Sbjct: 200 ----------WPKSANC---------EWEEPPVPGERFDYNAKPNRFYVNLETTGPLKPN 240
Query: 361 TLFTEAVKILEDKCERVITEL 381
+F++ L+ K ++ EL
Sbjct: 241 EVFSKGCIELQKKIANIVFEL 261
>gi|302654573|ref|XP_003019090.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
gi|291182788|gb|EFE38445.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
Length = 351
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 123/302 (40%), Gaps = 62/302 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 25 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K +
Sbjct: 81 ---------SKNCDTDMLYSRDCDCEAGCARCVIN------------LSLHAKCTTEEIM 119
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
K D E+ NP+ P+ I +L GQE++ KGI K
Sbjct: 120 KVYA-RDLVVVGDRANEWVGNPVVTDPEGKGPI----ICKLRRGQEVKFNCIVKKGIAKE 174
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+P A + P L V+ E VK P+ S AQP+
Sbjct: 175 HAKWAPTAAVGFEYDPH-NNLRHVDYWFEEDPVKEWPL---------SANAGWETAQPK- 223
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
+ + + F IES G L P+ + + + +++ K +I+
Sbjct: 224 --------------DLPFNYDATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKLAEIISG 269
Query: 381 LS 382
L+
Sbjct: 270 LT 271
>gi|115384192|ref|XP_001208643.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114196335|gb|EAU38035.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 331
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 128/299 (42%), Gaps = 65/299 (21%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD-- 145
++F L +D A AN+ RR ++AE+PT+AI+ V + NTSV+ DE LAHRLGLIP+
Sbjct: 25 VDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNC 84
Query: 146 PRLFEYMSENDTSNE--KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ EY + + + + ++ +LH C G + V +L + + T +
Sbjct: 85 DQDLEYTRDCECEDHCARCSVTLQLHARC-TGDDIMRVYARDLAVAGERANDWVGTPVIT 143
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+P K P+ I +L GQE+++ A KGI K HAK
Sbjct: 144 DPEGK-------------------GPL-------ICKLRRGQELKMTCIAKKGIAKEHAK 177
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
W+P A + P L V+ + + + + A QP
Sbjct: 178 WAPTAAIGFEYDPHNNLRH---------------VDYWPVSQNAAWEHAAPPDQPF---- 218
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+++ + + +F +ES G L P+ + + + +L+ K VI+ LS
Sbjct: 219 ---------DYDAQPA------NFYLDVESIGNLDPDMIIQQGIIVLQRKLASVISSLS 262
>gi|302679472|ref|XP_003029418.1| hypothetical protein SCHCODRAFT_39441 [Schizophyllum commune H4-8]
gi|300103108|gb|EFI94515.1| hypothetical protein SCHCODRAFT_39441, partial [Schizophyllum
commune H4-8]
Length = 257
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 18/203 (8%)
Query: 80 VIR-LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
+IR L KD ++F L +D + AN+FRR+++A++PT+AI+ V NT+V+ DE +AHRLG
Sbjct: 4 IIRALEKDRVDFVLENVDLSFANSFRRVMMADIPTVAIDLVEFETNTTVLPDEFIAHRLG 63
Query: 139 LIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
++P+I D D + + I L V C + V + L
Sbjct: 64 MVPLISDNCEEGMRYTRDCTCLSWCQYCAIELVLDVKCTEDNMSMDVTSKHLD------- 116
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP-IRPMLDITIARLGPGQEIELEAHA 253
++ PS + Q P P P+L IAR+ GQ +++ A
Sbjct: 117 --VQNVQPGQPSGAEGDEMASRPPQFGWPVTYREPDAEPIL---IARIRKGQALKVRCIA 171
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K H+KWSP + + P
Sbjct: 172 KKGIAKEHSKWSPCSAVGFEYDP 194
>gi|389741508|gb|EIM82696.1| insert subdomain of RNA polymerase alpha subunit [Stereum hirsutum
FP-91666 SS1]
Length = 411
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 23/211 (10%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L +D + F L + A AN+ RR+++A+LPT+AI+ V I NT+V+ DE +AHRL
Sbjct: 11 VRIRTLKRDRVNFVLENAELAFANSLRRVMMADLPTIAIDMVEIETNTTVLPDEFIAHRL 70
Query: 138 GLIPIIVDPRLFEYMSEN-----DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
G+IP +V E M N T+ ++ L+V C + + +N L +P+
Sbjct: 71 GMIP-LVSANCDEAMRYNRDCTCATNCSACSVKLHLNVACHDNR-TMDITSNHLDVVPH- 127
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLL--PEFSNNP-IRPMLDITIARLGPGQEIEL 249
D + F D P N+P ++P+L I ++ GQE+++
Sbjct: 128 ---------DYTDYAADEQQEEFHKRIDTFGHPVGKNDPNVQPVL---ICKIRKGQELKV 175
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
A KGI K HAKWSP + + P L
Sbjct: 176 RCIAKKGIAKEHAKWSPCSAVSFEYDPHNKL 206
>gi|258565481|ref|XP_002583485.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907186|gb|EEP81587.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 345
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 124/305 (40%), Gaps = 68/305 (22%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L+ +D A AN+ RR+++ E+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 25 VDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNC 84
Query: 148 LFEYMSENDTSNEKNT----IVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDS 203
+ + D E I +LH C G + V +L + + + + +
Sbjct: 85 DVDMVYARDCDCEGGCSRCIITLQLHAKCTGEG-VMVVYARDLVVIGDRANEWVGNPVIN 143
Query: 204 NPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+P+ K PI I +L QE+++ KGI K HAK
Sbjct: 144 DPAGK-------------------GPI-------ICKLRRDQEVKMTCTVKKGIAKEHAK 177
Query: 264 WSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
W+P A + P L V+ E VK PV+
Sbjct: 178 WAPTAAIGFEYDPH-NNLRHVDYWYEEDPVKEWPVSA----------------------- 213
Query: 324 CRECLRCGEEWEKRVSIRRVKDH------FIFTIESTGALSPETLFTEAVKILEDKCERV 377
EWE D+ F +ES G L P+ + + + +L+ K +
Sbjct: 214 -------NAEWEHPAPPDMPFDYDAAPSTFYLDVESIGNLEPDAIVQQGISVLQRKLAEI 266
Query: 378 ITELS 382
I+ LS
Sbjct: 267 ISALS 271
>gi|118576727|ref|YP_876470.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Cenarchaeum symbiosum A]
gi|118195248|gb|ABK78166.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Cenarchaeum symbiosum A]
Length = 212
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 91/186 (48%), Gaps = 42/186 (22%)
Query: 83 LTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L+KD+ + L G+ ANA RRI + +P A++ V I NTSV+ DE LAHRLGLI
Sbjct: 7 LSKDERKISIRLRGVPLQYANALRRICLNGVPVFAVDTVDIVENTSVLADEGLAHRLGLI 66
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P+ D F+ ++E D + N ++ L
Sbjct: 67 PLRTDSSEFKNLAEIDPDDPINRVMLTL-------------------------------- 94
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAVKGIGK 259
DS +++ RT S +L+ E S+ ++P+ D I I L PGQ I++EA+A G G
Sbjct: 95 -DSGEAAETRTVL----SSELVSEDSS--VKPISDTIPIVELAPGQRIKVEAYARLGRGT 147
Query: 260 THAKWS 265
HAKW+
Sbjct: 148 EHAKWN 153
>gi|302509162|ref|XP_003016541.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
gi|291180111|gb|EFE35896.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 123/302 (40%), Gaps = 62/302 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 35 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 90
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K +
Sbjct: 91 ---------SKNCDTDMLYSRDCDCEAGCARCVIN------------LSLHAKCTTEEIM 129
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
K D E+ NP+ P+ I +L GQE++ KGI K
Sbjct: 130 KVYA-RDLVVVGDRANEWVGNPVVTDPEGKGPI----ICKLRRGQEVKFNCIVKKGIAKE 184
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+P A + P L V+ E VK P+ S AQP+
Sbjct: 185 HAKWAPTAAVGFEYDPH-NNLRHVDYWFEEDPVKEWPL---------SANAGWETAQPK- 233
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
+ + + F IES G L P+ + + + +++ K +I+
Sbjct: 234 --------------DLPFNYDATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKLAEIISG 279
Query: 381 LS 382
L+
Sbjct: 280 LT 281
>gi|1834323|dbj|BAA09316.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 296
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 133/305 (43%), Gaps = 59/305 (19%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
++K+ ++F L A+AN+ RR+++AE+PT+AI+ V I NTSV+ DE LAHRLG+IP+
Sbjct: 12 ISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPL 71
Query: 143 IVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLE 198
D+SN + + + C++ P+ +V EL L
Sbjct: 72 -------------DSSNIDEPPPVGLEYTRNCDCDQYCPKCSV------------ELFLN 106
Query: 199 TKPDSNPSSK--PRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKG 256
K + + R S+S P ++ R L I +L QEI L A KG
Sbjct: 107 AKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPL---ICKLRKEQEISLRCIAKKG 163
Query: 257 IGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVA 316
I K HAKWSP + + P KL T D + K A
Sbjct: 164 IAKEHAKWSPTSAVAFEYDP------------WNKLQHTDYWFENDADAEWPKSKNADWE 211
Query: 317 QPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCER 376
+P R GE + + RR F +ES G++ P + + ++IL++K
Sbjct: 212 EPP---------REGEPFNFQEEPRR----FYMDVESVGSIPPNEIMVQGLRILQEKLAV 258
Query: 377 VITEL 381
++ +L
Sbjct: 259 LVRDL 263
>gi|126273908|ref|XP_001387335.1| 45 kDa subunit of RNA polymerase II [Scheffersomyces stipitis CBS
6054]
gi|126213205|gb|EAZ63312.1| 45 kDa subunit of RNA polymerase II [Scheffersomyces stipitis CBS
6054]
Length = 315
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 28/193 (14%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
+D + F L +D A+AN+ RR+++AE+PT+AI+ V I NTSV+ DE L+HRLGL+P++
Sbjct: 18 RDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSHRLGLVPLV- 76
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
S + + C+ P+ +V+ EL + DS
Sbjct: 77 -------------SEGIENLTYSRDCTCDNYCPKCSVRL----------ELTAKCDTDST 113
Query: 205 PSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
+ F + L P + R L I +L QE+ L A KGI K HAK
Sbjct: 114 MNVYATDLAKFHNGSRLGDPVVRDVQKRGPL---ICKLRKHQELRLTCIAKKGIAKEHAK 170
Query: 264 WSPVATAWYRMLP 276
WSP + + P
Sbjct: 171 WSPCSAVGFEYDP 183
>gi|406606315|emb|CCH42306.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 321
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 28/201 (13%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ + + D+++F L +D ++AN+ RR++I+E+PT+AI+ V I NTSV+ DE +AHRL
Sbjct: 6 INIRKTASDEVDFVLSNVDLSLANSIRRVMISEIPTLAIDSVEIETNTSVLADEFIAHRL 65
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GLIP+ S + + + + C+ + +V EL L
Sbjct: 66 GLIPL--------------QSLDVDKLSYSRDCTCDDYCNKCSV------------ELEL 99
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIARLGPGQEIELEAHAVK 255
+ + D + + + F SQ+ + I + + I +L QE+ + A K
Sbjct: 100 KVRADQDSTLNVYSKDLFIVSQNTHLNIGSAIITDPEENGVLICKLRNEQELFIRCIAKK 159
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
GI K HAKWSP A + P
Sbjct: 160 GIAKEHAKWSPCAAIGFEYDP 180
>gi|387593833|gb|EIJ88857.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
gi|387595137|gb|EIJ92763.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 254
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 39/200 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E+ +T++ ++F L G +ANA RR+++ E+PT+AI+ V N +VI +E+ R
Sbjct: 3 KIEIEEVTEESIKFTLEGCTLGMANALRRVIMTEIPTLAIDIVQFDKNYTVIPEEMTTDR 62
Query: 137 LGLIPIIVDPRLFE-YMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
LGLIPI + L E Y+ D S C+ ++ +
Sbjct: 63 LGLIPI--ESSLVEKYLYPKDCS-------------CKSFCKNCSI------------SI 95
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR---PMLDITIARLGPGQEIELEAH 252
L+ K N P T T S+ L E +PI P I RLG Q I+ +
Sbjct: 96 VLDVK---NDGQTPMTVT----SKSLFVE-GGDPINIGDPRYPSIITRLGHKQSIKCKCI 147
Query: 253 AVKGIGKTHAKWSPVATAWY 272
AVKGIGK H+KWSPV+T +
Sbjct: 148 AVKGIGKKHSKWSPVSTVAF 167
>gi|327311714|ref|YP_004338611.1| RNA polymerase, insert [Thermoproteus uzoniensis 768-20]
gi|326948193|gb|AEA13299.1| RNA polymerase, insert [Thermoproteus uzoniensis 768-20]
Length = 279
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 134/300 (44%), Gaps = 64/300 (21%)
Query: 83 LTKDDMEFDLI--GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
L +D++ L G+ ++ N+ RRI+I+E+P AI++VLI NNTS + DE+LAHRLGLI
Sbjct: 7 LERDNLHLKLYIEGVKPSLINSIRRIIISEVPVFAIDQVLIVNNTSSMYDEMLAHRLGLI 66
Query: 141 PIIVDPRLFEYMSENDTSN---EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
P+ LF + E +T + T+ F L V + TV + +L +
Sbjct: 67 PLTTPLDLFPKIEECETGMVDPAECTVRFTLQVTADDAK---TVYSGDL----------V 113
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
PD P+ P DI I +L GQ I LEA+A G
Sbjct: 114 SDHPDV------------------------KPVYP--DIPIVKLVKGQSISLEAYARLGR 147
Query: 258 GKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKT---CPVNVFDIEDIGSGKKRAT 314
K HAKW A Y P+++ V+ ED + L + CP + F + T
Sbjct: 148 AKEHAKWQ-AGLATYYYFPKLI----VKGEDPQCLAQCKSICP-DAFGNSLNEFNPYKCT 201
Query: 315 VAQPRAC-TLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ + C LC L +W++ +I IES G + + + +EA +I + K
Sbjct: 202 FGKLKTCENLCGGLL--AVDWDRF--------KYIMNIESYGNMDVDKMLSEAFRIFKVK 251
>gi|150402492|ref|YP_001329786.1| RNA polymerase insert [Methanococcus maripaludis C7]
gi|150033522|gb|ABR65635.1| RNA polymerase insert [Methanococcus maripaludis C7]
Length = 180
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 90/200 (45%), Gaps = 56/200 (28%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+E+PT AIE V NTS + DEVLAHRLGLIPI
Sbjct: 10 SFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPI--------------- 54
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P V +E+ L E P Y+S
Sbjct: 55 ----------------KGVP---VSGDEVIVLTISKEGPC------------MVYSSDLK 83
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ P F N P I +L GQ++ELEA A+ G GK HAKW P + ++ +
Sbjct: 84 SESGEPAFENIP--------IVKLAEGQKLELEAEALVGTGKIHAKWQPCNAVYKQISND 135
Query: 278 IV--LLEDVEDEDAEKLVKT 295
V +E + DAE +V++
Sbjct: 136 EVEFKIESFGNMDAEDIVRS 155
>gi|347523607|ref|YP_004781177.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
gi|343460489|gb|AEM38925.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
Length = 293
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 125/294 (42%), Gaps = 37/294 (12%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G A NA RR +P MAI+ V +N +V+ DE+LAHRLGLIP+ S
Sbjct: 15 GAPLAFVNALRRAAYTMVPVMAIDYVEFIDNNTVLYDEILAHRLGLIPL---------DS 65
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+ K F+ + G P K+ G L + ++ Y+
Sbjct: 66 REAIKSYKKPEEFQESCIDSSGVP---------KFDEPGCFATLTLEVETGVDEVRMVYS 116
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D + P+ P +I I + PGQ + + A+A G GK HAKW PV+ A +R
Sbjct: 117 GDLQSSDP----TVKPVYP--NIPIVLMAPGQRLHVRAYARLGYGKEHAKWFPVSVAAHR 170
Query: 274 MLPEIVLLEDVEDEDAEKLVKT----CPVNVFDIEDIGSGKKRATVAQPRACTLCRECL- 328
LP VL D + E A ++ P + ++ + + + R+ TL C+
Sbjct: 171 YLP--VLEFDPKHEKANDCIECIEEFAPEVAEKLRNMKEKGRIEILEEVRSSTLLW-CVK 227
Query: 329 -RCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
RCG+ + + I TIES G L + A ++ K +I+EL
Sbjct: 228 KRCGDA----AKLEFDSNKLILTIESVGQLPARDILVLASDAIKRKALEMISEL 277
>gi|336261545|ref|XP_003345560.1| hypothetical protein SMAC_06213 [Sordaria macrospora k-hell]
gi|380094769|emb|CCC07270.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 311
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 37/205 (18%)
Query: 80 VIRLTKDD---MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
V+++++ D ++F+L + AN+ RR+++AE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 17 VVKISQADSTRVKFELSNTELCFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAHR 76
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D L+ + D E ++ LH C G + V +L +P G
Sbjct: 77 LGLIPLNAEGIDQLLYSRDCDCDEYCEHCSVTLNLHAKC-TGDDIMQVCARDL--VPVGD 133
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP--IRPMLDITIARLGPGQEIELEA 251
+ +Q L N+P P+ I +L GQEI+L+
Sbjct: 134 RV----------------------NQVLGSPIINDPEGQGPL----ILKLRHGQEIKLQC 167
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLP 276
A KGI K H+KW+P A + P
Sbjct: 168 IAKKGIAKEHSKWAPSAAIGFEYDP 192
>gi|50418977|ref|XP_458009.1| DEHA2C07546p [Debaryomyces hansenii CBS767]
gi|49653675|emb|CAG86069.1| DEHA2C07546p [Debaryomyces hansenii CBS767]
Length = 311
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 38/224 (16%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV + K+ ++F L +D A+AN+ RR ++AE+PT+AI+ V I NTSV+ DE ++HR
Sbjct: 12 RVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISHR 71
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ +D + D ++ +L C+ ++V +++L NGS
Sbjct: 72 LGLIPLNSEGIDNLSYSRDCTCDQYCANCSVKLELTAKCDT-DSTMSVYSSDLAKFHNGS 130
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+L +P ++ N+ P+ I +L QE+ + A
Sbjct: 131 KL-------GDPVAR-----------------DNHRKGPL----ICKLRKHQELRITCIA 162
Query: 254 VKGIGKTHAKWSPVAT------AWYRMLPEIVLLEDVEDEDAEK 291
KGI K HAKWSP W ++ ED DE+ K
Sbjct: 163 KKGIAKEHAKWSPCGAIGFEYDPWNKLKHTDYWYEDDADEEWPK 206
>gi|440494332|gb|ELQ76725.1| DNA-directed RNA polymerase [Trachipleistophora hominis]
Length = 310
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE 160
NA RR ++ E+P +AI K++ ++ +EVLAHRLGL+PI D L + ++
Sbjct: 31 NALRRTILEEIPAVAISKIIFHKYVGIVPEEVLAHRLGLVPIFCDALL---LVDSAVPTR 87
Query: 161 KNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220
+ + ++ GG + E+ +G + +++ D
Sbjct: 88 NSCVRMRIRKRGADGGVWVRSDDIEVVHFDSGRRMC--------------SWSRAVEEDD 133
Query: 221 LLPEFSNNPIRPMLD-------------ITIARLGPGQEIELEAHAVKGIGKTHAKWSPV 267
L E + I LD + I +LGP Q ++ E +A +G K HAK+S V
Sbjct: 134 GLEEVDGDGIANALDHTYNANLPMIKPGVLITKLGPNQCLDAEMYATRGTAKEHAKYSSV 193
Query: 268 ATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
+YRM P + L ++EDA L K V I G
Sbjct: 194 NICYYRMHPILTLNRSFKNEDAHLLKKRFKDGVIGIRRKG 233
>gi|333910738|ref|YP_004484471.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
gi|333751327|gb|AEF96406.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
Length = 195
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 94/201 (46%), Gaps = 56/201 (27%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V + NTS + DE+LAHRLGLIPI P +SE++
Sbjct: 25 SFSNAIRRIMISEVPTYAIENVYVHENTSSMHDEILAHRLGLIPIKGKP-----ISEDE- 78
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
I F L + GP TV +++LK
Sbjct: 79 -----VITFTLV----KEGP-CTVYSSDLK------------------------------ 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S++ F N P I +L GQ IEL A GIGK HAKW P + ++ +
Sbjct: 99 SENGEVAFKNIP--------IIKLKEGQRIELVCEATVGIGKVHAKWQPCNATYKQIDDD 150
Query: 278 IV--LLEDVEDEDAEKLVKTC 296
V L+E + D E ++KT
Sbjct: 151 EVEFLVESFGNMDPEDILKTA 171
>gi|134045316|ref|YP_001096802.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
C5]
gi|132662941|gb|ABO34587.1| DNA-directed RNA polymerase, subunit D [Methanococcus maripaludis
C5]
Length = 180
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 90/200 (45%), Gaps = 56/200 (28%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+E+PT AIE V NTS + DEVLAHRLGL+PI
Sbjct: 10 SFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLVPI--------------- 54
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P V +E+ L E P Y+S
Sbjct: 55 ----------------KGVP---VSGDEVIVLTISKEGPC------------MVYSSDIK 83
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ P F N P I +L GQ++ELEA A+ G GK HAKW P + ++ +
Sbjct: 84 SESGEPAFENIP--------IVKLAEGQKLELEAEALVGTGKIHAKWQPCNAVYKQISND 135
Query: 278 IV--LLEDVEDEDAEKLVKT 295
V +E + DAE ++++
Sbjct: 136 EVEFKIESFGNMDAEDIIRS 155
>gi|346323448|gb|EGX93046.1| RNA polymerase II subunit 3 [Cordyceps militaris CM01]
Length = 364
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 133/309 (43%), Gaps = 59/309 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV+ TK +EF L A AN+ RR++ AE+PT+AIE V I NTSV+ DE +AHR
Sbjct: 29 RVKAADSTK--VEFVLAKTSLAFANSLRRVIQAEVPTVAIELVEIEVNTSVLADEFIAHR 86
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
LGLIP+ VD + + D E+ +I LH C + V +L + +G
Sbjct: 87 LGLIPLDSKDVDELNYSRDCDCDHYCEQCSITLTLHAKCTT-DENMKVYARDL--IVDG- 142
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
R TS + N+P + +A+L QE+ L+ A
Sbjct: 143 ----------------RHATSIGTP------VINDP--DGVGCLLAKLRRDQELRLKCVA 178
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
KGI K HAKW P + + P L D+ E+ K P + + +G +
Sbjct: 179 KKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFENNTDPDKEWPKSKY------AGWEP 232
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+P + V ++F F +E++G++ P+ + +++L+
Sbjct: 233 ENKGEP-------------------FNYDAVPENFFFDVETSGSMEPDQIVQSGIRVLQQ 273
Query: 373 KCERVITEL 381
K ++ L
Sbjct: 274 KIGGLLKSL 282
>gi|315050740|ref|XP_003174744.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
gi|311340059|gb|EFQ99261.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
Length = 369
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 121/302 (40%), Gaps = 62/302 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+FRR ++AE+PT+AI+ V I NTSV+ DE ++HRLGLIP+
Sbjct: 43 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLC---- 98
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
+ N +++ CE G R + L L K S
Sbjct: 99 ---------SKNCDTDMLYSRDCDCEAGCARCVIN------------LSLHAKCTSEDIM 137
Query: 208 KPRTYTSFSSSQDLLPEFSNNPI-------RPMLDITIARLGPGQEIELEAHAVKGIGKT 260
K D E+ NP+ P+ I +L GQE++ KGI K
Sbjct: 138 KVYA-RDLVVVGDRANEWVGNPVVTDPEGKGPI----ICKLRRGQEVKFNCIVKKGIAKE 192
Query: 261 HAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
HAKW+P A + P L V+ E +K P+ S A P+
Sbjct: 193 HAKWAPTAAVGFEYDPH-NNLRHVDYWFEEDPIKEWPL---------SANAGWETAHPK- 241
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
+ + F IES G L P+ + + + +++ K +I+
Sbjct: 242 --------------DLPFDYDAAPNTFYIDIESIGNLEPDAVVQQGIIMMQRKLAEIISG 287
Query: 381 LS 382
L+
Sbjct: 288 LT 289
>gi|19074310|ref|NP_585816.1| DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|19068952|emb|CAD25420.1| DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|449329459|gb|AGE95731.1| DNA-directed RNA polymerase II third chain [Encephalitozoon
cuniculi]
Length = 240
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 41/188 (21%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
LT + + F L ANA RRILI+E+PT+AI+ V I N +V+ DEVLAHRLGLIP
Sbjct: 9 LTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGLIP- 67
Query: 143 IVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
I R +Y E S + ++VF++ V+ R TV T ++
Sbjct: 68 IYSKRELKYKEECSCSGFCSECSVVFEIDVVHTDDTLR-TVSTRDI-------------- 112
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+D++ + P+ I +L Q ++ KG+GKT
Sbjct: 113 --------------VCDEEDVI--IKSGPV-------ITKLARDQGLKARCIGRKGVGKT 149
Query: 261 HAKWSPVA 268
HAKWSPV+
Sbjct: 150 HAKWSPVS 157
>gi|374635695|ref|ZP_09707289.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373561548|gb|EHP87781.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 194
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 91/200 (45%), Gaps = 56/200 (28%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ +NA RRI+I+E+PT AIE V + NTS + DE+LAHRLGLIPI P
Sbjct: 25 SFSNAIRRIMISEVPTYAIENVYVHENTSSMHDEILAHRLGLIPIKGKP----------- 73
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+E I F L + GP TV +++LK NG +
Sbjct: 74 VSEDEVITFTLI----KEGP-CTVYSSDLKS-ENGEVV---------------------- 105
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
F N P I +L GQ IEL A GIGK HAKW P + ++ +
Sbjct: 106 -------FKNIP--------IIKLREGQRIELVCEATVGIGKIHAKWQPCNATYKQISDD 150
Query: 278 IV--LLEDVEDEDAEKLVKT 295
V L+E + D E ++KT
Sbjct: 151 EVEFLVESFGNMDPEDILKT 170
>gi|159905734|ref|YP_001549396.1| RNA polymerase insert [Methanococcus maripaludis C6]
gi|159887227|gb|ABX02164.1| RNA polymerase insert [Methanococcus maripaludis C6]
Length = 180
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 89/200 (44%), Gaps = 56/200 (28%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+E+PT AIE V NTS + DEVLAHRLGLIPI
Sbjct: 10 SFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPI--------------- 54
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P V +E+ L E P Y+S
Sbjct: 55 ----------------KGVP---VSGDEVIVLTISKEGPC------------MVYSSDIK 83
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ P F N P I +L GQ++ELE A+ G GK HAKW P + ++ +
Sbjct: 84 SESGEPAFENIP--------IVKLAEGQKLELETEALVGTGKIHAKWQPCNAVYKQISND 135
Query: 278 IV--LLEDVEDEDAEKLVKT 295
V +E + DAE +V++
Sbjct: 136 EVEFKIESFGNMDAEDIVRS 155
>gi|403414765|emb|CCM01465.1| predicted protein [Fibroporia radiculosa]
Length = 387
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + L KD + F L +D A AN+FRR+++A++PT+A++ V + NT+V+ DE +AHRL
Sbjct: 9 VRIRELKKDQVNFVLENVDLAFANSFRRVMMADIPTVAVDMVEVQTNTTVLPDEFIAHRL 68
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
G+IP++ S N + T +L V+ E G +T+ +G
Sbjct: 69 GMIPLV---------SHNCDQGMRYT---RLSVMVEEG---VTMDVTSAHLDVSGPHRGQ 113
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
E N ++ + S P ++P P + I ++ GQE+++ A KGI
Sbjct: 114 EQH--WNEEAEGNEEMAKRGSNFGHPVGKDDPNVP--PVLICKIRKGQELKVRCIAKKGI 169
Query: 258 GKTHAKWSPVATAWYRMLP 276
K HAKWSP + + P
Sbjct: 170 AKEHAKWSPCSAVAFEYDP 188
>gi|1834322|dbj|BAA09315.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 296
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 134/311 (43%), Gaps = 59/311 (18%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+ + +++D ++F L A+AN+ RR+++AE+PT+AI+ V I NTSV+ DE LAHR
Sbjct: 6 HITIRNISRDSVDFVLTNSSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHR 65
Query: 137 LGLIPIIVDPRLFEYMSENDTSNEKN----TIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
L +IP+ D+SN + + + C++ P+ +V
Sbjct: 66 LDMIPL-------------DSSNIDEPPPVGLEYTRNCDCDQYCPKCSV----------- 101
Query: 193 SELPLETKPDSNPSSK--PRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
EL L K + + R S+S P ++ R L I +L QEI L
Sbjct: 102 -ELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPL---ICKLRKEQEISLR 157
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
A KGI K HAKWSP + + P KL T D +
Sbjct: 158 CIAKKGIAKEHAKWSPTSAVAFEYDP------------WNKLQHTDYWFENDADAEWPKS 205
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
K A +P R GE + + RR F +ES G++ P + + ++IL
Sbjct: 206 KNADWEEPP---------REGEPFNFQEEPRR----FYMDVESVGSIPPNEIMVQGLRIL 252
Query: 371 EDKCERVITEL 381
++K ++ +L
Sbjct: 253 QEKLAVLVRDL 263
>gi|448733727|ref|ZP_21715969.1| DNA-directed RNA polymerase subunit D [Halococcus salifodinae DSM
8989]
gi|445802247|gb|EMA52554.1| DNA-directed RNA polymerase subunit D [Halococcus salifodinae DSM
8989]
Length = 248
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 123/302 (40%), Gaps = 70/302 (23%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ V I D F + GI A AN RR ++A++PT++I+ V + N+SV+ DE + H
Sbjct: 5 YDVAFIDRDDRDARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVVENSSVMFDEQIGH 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLG+IP+ P FE S E T+ +
Sbjct: 65 RLGMIPLNAPPNEFE-------SGEGVTLGIDV--------------------------- 90
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
+ PD+ + S DL+ S++ + P D + I L Q +E EA AV
Sbjct: 91 ---SGPDT------------AYSGDLVS--SDSVVEPAEDNVPIIDLKEDQRLEAEAEAV 133
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
GKTHAK YR L ++ ++ D E+ P N+ R
Sbjct: 134 LDTGKTHAKHQGGVAVGYRHLQKVEVV-----GDREEFADEEP-NIL----------RGV 177
Query: 315 VAQPRACTLCRECLR--CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ + L E K VS+ V + F+F +E+ G+L+ E L T AV LE
Sbjct: 178 IEEDDELVLTEEFDNDLTNRYPGKEVSVEDVPNAFVFHVETDGSLTVEELVTAAVDSLET 237
Query: 373 KC 374
+
Sbjct: 238 RA 239
>gi|225684781|gb|EEH23065.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb03]
Length = 283
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 122/300 (40%), Gaps = 58/300 (19%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR ++AE+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 26 VDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAHRLGLIPL----- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V L L +
Sbjct: 81 --------NSKNCDADMDYSRDCDCEGGCARCVVM------------LSLNVRCTGEDVM 120
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEIELEAHAVKGIGKTHA 262
K D E+ +P+ + D I +L GQE+++ A KGI K H+
Sbjct: 121 KVYA-RDLIIVGDRANEWVGSPV--ITDAEGKGPVICKLSRGQELKMTCIAKKGIAKEHS 177
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KW+P A + P L+ V+ E K P I + T AQP
Sbjct: 178 KWAPTAAVGFEYDPH-NNLKHVDYWYEEDPAKEWP--------ISPNAEWETAAQP---- 224
Query: 323 LCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ F +ES G L P+ + + + +L+ K +I+ L+
Sbjct: 225 ------------DMPFDYDVQPSTFYIDVESIGNLEPDAIVQQGIMVLQRKLAEIISALT 272
>gi|70917445|ref|XP_732857.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56504115|emb|CAH83736.1| hypothetical protein PC300662.00.0 [Plasmodium chabaudi chabaudi]
Length = 126
Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 71/120 (59%)
Query: 32 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFD 91
I+++ V+ + P + + G+Y +N ++ F N +++I+ ++ + +
Sbjct: 4 IKYKDQFVKMGQEGPRNATTTNFYGSYFLTENENFFDINKFEENLEMKIIKNEENLLILE 63
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
+ ++ +IANA RRI+I+E+PT+AIEKV I NT VI DE+L HRLGLIP + L +
Sbjct: 64 IKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPFKFNADLINF 123
>gi|425774142|gb|EKV12459.1| RNA polymerase II subunit 3 [Penicillium digitatum PHI26]
gi|425778395|gb|EKV16523.1| RNA polymerase II subunit 3 [Penicillium digitatum Pd1]
Length = 335
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 127/313 (40%), Gaps = 87/313 (27%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---IV 144
++F L +D A AN+ RR ++AE+PT+A++ + I +NTSV+ DE LAHRLG+IP+
Sbjct: 24 VDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAHRLGMIPLNSYNC 83
Query: 145 DPRLFEYMSENDTSNE--KNTIVFKLHVLCERG------------GPRLTVKTNELKWLP 190
D L +Y + D + + ++ LH C G G R+ K +
Sbjct: 84 DQDL-DYTRDCDCEDHCVRCSVTLSLHARCGSGIMSVYARDLIVVGERINDKIGD----- 137
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
P+ T P+ + P+ I +L GQEI++
Sbjct: 138 -----PVTTDPE-----------------------NKGPL-------ICKLRKGQEIKMT 162
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
A KG K HAKW+P A + P L ++ ++DA K + I + +
Sbjct: 163 CLAKKGTAKEHAKWAPTAAVGFEYDPNNNLRHVDYWYEQDAAK--------EWPISENAA 214
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
+ A QP C F F +ES G L P+ + + +
Sbjct: 215 WEPAANPDQPFDYDAEPNC-------------------FYFDVESIGNLEPDMIIQQGIV 255
Query: 369 ILEDKCERVITEL 381
L+ K ++ L
Sbjct: 256 SLQRKLATTVSVL 268
>gi|126460700|ref|YP_001056978.1| DNA-directed RNA polymerase subunit D [Pyrobaculum calidifontis JCM
11548]
gi|166229320|sp|A3MXZ5.1|RPOD_PYRCJ RecName: Full=DNA-directed RNA polymerase subunit D
gi|126250421|gb|ABO09512.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum calidifontis
JCM 11548]
Length = 258
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 128/300 (42%), Gaps = 79/300 (26%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ ++ N+ RR++I+ELP +AI+ V++ NNTSV+ DE+LAHRLGLIP+ + +
Sbjct: 20 GVPPSLINSLRRVIISELPVLAIDSVVVVNNTSVMYDEMLAHRLGLIPLTTPLKDLPPIE 79
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
+ CE G L + SE + N + Y
Sbjct: 80 D-----------------CESG-------------LVDPSECTVRLTLQVNATGDVVVYA 109
Query: 214 S--FSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
+ D+ P + DI I +L GQ + +EA+A G + HAKW A A
Sbjct: 110 GDLVADRPDVAPVYK--------DIPIVKLVEGQSVVVEAYAKLGRARDHAKWQ-AALAS 160
Query: 272 YRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL-----CRE 326
Y P++V V+ E+ ++ K N + P CT C+E
Sbjct: 161 YYYYPKVV----VKREECREMCKEVCRN---------------LENPLECTFNKATTCKE 201
Query: 327 CLRCGE----EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
CG EWE KD ++F IES G ET EA +IL+ K E + LS
Sbjct: 202 --MCGGGIVVEWE--------KDKYVFWIESFGNYDAETALREAFRILKKKFEDFLDALS 251
>gi|18312091|ref|NP_558758.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
gi|20978701|sp|Q8ZYQ3.1|RPOD_PYRAE RecName: Full=DNA-directed RNA polymerase subunit D
gi|18159521|gb|AAL62940.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
Length = 260
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 128/285 (44%), Gaps = 67/285 (23%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PRLF 149
G+ ++ N+ RR++I+ELP MAI+ V++ NNTSV+ DE+LAHRLGLIP+ P
Sbjct: 20 GVPPSLVNSLRRVIISELPVMAIDNVVVVNNTSVMYDEMLAHRLGLIPLTTPLQSLPPYE 79
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
+ +S +E +T RLT++ +E S +P
Sbjct: 80 DCVSGLADPSECST--------------RLTLQVT--------AEGDTTIYSGDLASDRP 117
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
D++P + DI I +L GQ I LEA+A G+ K HAKW AT
Sbjct: 118 ----------DVVPVYK--------DIPIVKLVKGQSIVLEAYAKLGVAKDHAKWQ-AAT 158
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVK-TCPVNVFDIEDIGSGKKRATVAQPRACTLCRECL 328
A Y P++V V+ E+ ++ K C + P C+ +
Sbjct: 159 ASYYYYPKVV----VKSENCREMCKEIC----------------RQLENPIECSF-NKAW 197
Query: 329 RCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
C + ++ + + K+ ++F +ES G T EA +IL+ K
Sbjct: 198 TCKDLCKEGLEVTWDKNKYVFWVESFGNYDVNTALREAFRILKRK 242
>gi|449692874|ref|XP_004213207.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Hydra magnipapillata]
Length = 131
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
RV+++ T D+++F L D ++AN+ RRI IAE+PT+AI+ V I NNTSV+ DE +AHR
Sbjct: 8 RVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDEFIAHR 67
Query: 137 LGLIPIIVDPRLFEYMSENDTS----NEKNTIVFKLHVLC 172
+GLIP+ D ++ + D + ++ ++ F L V C
Sbjct: 68 IGLIPLTSDEKVDKMCYSRDCTCSEFCDECSVKFTLDVKC 107
>gi|407464315|ref|YP_006775197.1| RNA polymerase insert [Candidatus Nitrosopumilus sp. AR2]
gi|407047503|gb|AFS82255.1| RNA polymerase insert [Candidatus Nitrosopumilus sp. AR2]
Length = 212
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L GI ANA RR+ + +P AI+ V I N+SV+ DE LAHRL
Sbjct: 4 LEVISKDNQKIAVKLSGIPLQYANALRRVCLNGVPVFAIDTVDIIENSSVLPDEGLAHRL 63
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ + +E ++ ++ + G + TV +NEL
Sbjct: 64 GLIPLTTDLSRFNEPSKCECQSETGCSNCRVMLVLDSGDSDVTRTVLSNEL--------- 114
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
SS+D + I+P D I I +L PGQ I++E +A
Sbjct: 115 ---------------------SSED-------DSIKPTSDKIPIVQLAPGQRIKIECYAR 146
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKL 292
G G HAKW+ I L D E ED + L
Sbjct: 147 LGRGTEHAKWNSAT---------ISTLTDTEKEDVKVL 175
>gi|303389576|ref|XP_003073020.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302164|gb|ADM11660.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
intestinalis ATCC 50506]
Length = 240
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 41/189 (21%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
LT + + F L ANA RRILI+E+PT+AI+ V I N +V+ DEVLAHRLGLIP
Sbjct: 9 LTPERIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGLIP- 67
Query: 143 IVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
+ R +Y E S + ++VF++ V+ R+ V T ++
Sbjct: 68 VYSKRELKYKDECSCSGFCSECSVVFEIDVVHTEDALRV-VSTRDI-------------- 112
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+D++ + PI I +L Q ++ KGIG+T
Sbjct: 113 --------------ICDEEDVV--VKSGPI-------ITKLARDQGLKARCIGRKGIGRT 149
Query: 261 HAKWSPVAT 269
HAKWSPV+
Sbjct: 150 HAKWSPVSA 158
>gi|226286652|gb|EEH42165.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb18]
Length = 352
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 124/306 (40%), Gaps = 70/306 (22%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR ++AE+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 26 VDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAHRLGLIPL----- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V L L +
Sbjct: 81 --------NSKNCDADMDYSRDCDCEGGCARCVVM------------LSLNVRCTGEDVM 120
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEIELEAHAVKGIGKTHA 262
K D E+ +P+ + D I +L GQE+++ A KGI K H+
Sbjct: 121 KVYA-RDLIIVGDRANEWVGSPV--ITDAEGKGPVICKLSRGQELKMTCIAKKGIAKEHS 177
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KW+P A + P L+ V+ E K P++ P A
Sbjct: 178 KWAPTAAVGFEYDPH-NNLKHVDYWYEEDPAKEWPIS------------------PNA-- 216
Query: 323 LCRECLRCGEEWEKRVSIRRVKDH------FIFTIESTGALSPETLFTEAVKILEDKCER 376
EWE D+ F +ES G L P+ + + + +L+ K
Sbjct: 217 ----------EWETAAQPDMPFDYDVQPSTFYIDVESIGNLEPDAIVQQGIMVLQRKLAE 266
Query: 377 VITELS 382
+I+ L+
Sbjct: 267 IISALT 272
>gi|295662885|ref|XP_002791996.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279648|gb|EEH35214.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 352
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 124/306 (40%), Gaps = 70/306 (22%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F L +D A AN+ RR ++AE+PT+AI+ V I +NTSV+ DE +AHRLGLIP+
Sbjct: 26 VDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAHRLGLIPL----- 80
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
++ N + + CE G R V L L +
Sbjct: 81 --------NSKNCDADMDYSRDCDCEGGCARCIVM------------LSLNVRCTGEDVM 120
Query: 208 KPRTYTSFSSSQDLLPEFSNNPIRPMLDI-----TIARLGPGQEIELEAHAVKGIGKTHA 262
K D E+ +P+ + D I +L GQE+++ A KGI K H+
Sbjct: 121 KVYA-RDLIIVGDRANEWVGSPV--ITDAEGKGPVICKLSRGQELKMTCIAKKGIAKEHS 177
Query: 263 KWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACT 322
KW+P A + P L+ V+ E K P++ P A
Sbjct: 178 KWAPTAAVGFEYDPH-NNLKHVDYWYEEDPAKEWPIS------------------PNA-- 216
Query: 323 LCRECLRCGEEWEKRVSIRRVKDH------FIFTIESTGALSPETLFTEAVKILEDKCER 376
EWE D+ F +ES G L P+ + + + +L+ K
Sbjct: 217 ----------EWETAAQPDMPFDYDVQPSTFYIDVESIGNLEPDAIVQQGITVLQRKLAE 266
Query: 377 VITELS 382
+I+ L+
Sbjct: 267 IISALT 272
>gi|342882719|gb|EGU83319.1| hypothetical protein FOXB_06170 [Fusarium oxysporum Fo5176]
Length = 340
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 125/320 (39%), Gaps = 78/320 (24%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ ++F+L + A ANA RRI+ AE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 19 QVKISAADHTHVDFELSKTNLAFANAVRRIIQAEVPTIAIDLVEIETNSSVLADEFIAHR 78
Query: 137 LGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERG------GPRLTVKTNELK 187
LGLIP+ VD + + + E+ ++ LH C L V +
Sbjct: 79 LGLIPLDSKGVDELNYSRDCDCEQYCEQCSVTLTLHAKCTSDEIMKVYARDLVVDGRHM- 137
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
NG P+ T P+ IA+L GQE+
Sbjct: 138 ---NGVGSPVITDPEG------------------------------YGCLIAKLRKGQEL 164
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIG 307
++ A KGI K HAKW P + + P L I+
Sbjct: 165 KISCIAKKGIAKEHAKWMPTSAVGFEYDPHNKL--------------------HHIDWWF 204
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWE------KRVSIRRVKDHFIFTIESTGALSPET 361
V P++ EWE + V + F F +E++G++ P+
Sbjct: 205 ENDTDPAVEWPKSKYA---------EWEEPPQEGEPFDYDAVPNRFYFEVETSGSMEPDQ 255
Query: 362 LFTEAVKILEDKCERVITEL 381
+ +++L+ K ++ L
Sbjct: 256 IVQNGIRVLQQKIGGLLKGL 275
>gi|255932027|ref|XP_002557570.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582189|emb|CAP80362.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 335
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 58/206 (28%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---IV 144
++F L +D A AN+ RR ++AE+PT+A++ + I +NTSV+ DE LAHRLG+IP+
Sbjct: 24 VDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAHRLGMIPLNSYNC 83
Query: 145 DPRLFEYMSENDTSNE--KNTIVFKLHVLCERG------------GPRLTVKTNELKWLP 190
D L +Y + D + + ++ LH C G G R+ K +
Sbjct: 84 DQDL-DYTRDCDCEDHCVRCSVTLSLHARCGSGIMSVYARDLIVVGERINDKIGD----- 137
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
P+ T P+ + P+ I +L GQE+++
Sbjct: 138 -----PVTTDPE-----------------------NKGPL-------ICKLRKGQEVKMT 162
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLP 276
A KG K HAKW+P A + P
Sbjct: 163 CLAKKGTAKEHAKWAPTAAVGFEYDP 188
>gi|289580107|ref|YP_003478573.1| RNA polymerase insert [Natrialba magadii ATCC 43099]
gi|448281346|ref|ZP_21472652.1| DNA-directed RNA polymerase subunit D [Natrialba magadii ATCC
43099]
gi|289529660|gb|ADD04011.1| RNA polymerase insert [Natrialba magadii ATCC 43099]
gi|445578768|gb|ELY33168.1| DNA-directed RNA polymerase subunit D [Natrialba magadii ATCC
43099]
Length = 249
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 128/310 (41%), Gaps = 85/310 (27%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + D F + GI A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREERDARFLVQGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P + E++ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLTT-PPVGEFV-------EDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS DL+ P N PI + D GQ +E EA AV
Sbjct: 103 --------------------VSSDDLVQPADENVPIIDLKD--------GQRLEAEADAV 134
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLV---------KTCPVNVFDIE 304
GK HAK YR L + +ED+ E ED ++ + + P + FD
Sbjct: 135 LDRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDPDRRIVRGVIEEDGELVPTSEFD-H 193
Query: 305 DIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFT 364
D+ + K V++ V + F+F +E+ G+ S E L T
Sbjct: 194 DLSNRYPG-----------------------KEVTLEDVPNSFVFHVETDGSFSVEELVT 230
Query: 365 EAVKILEDKC 374
A +E +
Sbjct: 231 RAADTIESRA 240
>gi|13541396|ref|NP_111084.1| DNA-directed RNA polymerase subunit D [Thermoplasma volcanium GSS1]
gi|20978715|sp|Q97B93.1|RPOD_THEVO RecName: Full=DNA-directed RNA polymerase subunit D
gi|14324779|dbj|BAB59706.1| DNA-directed RNA polymerase D [Thermoplasma volcanium GSS1]
Length = 271
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 61/317 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNT 125
V++ +L+ M F++ GI + ANA RR LI ++P +AIE V + +++
Sbjct: 3 VKIFKLSDKYMSFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDAEGNVYDSS 62
Query: 126 SVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
+ DE++AHRLGLIP+ D +S N F+ C G L T
Sbjct: 63 LPLFDEMVAHRLGLIPLKTD------LSLN----------FRDQCSCGGKGCSLCTVTYS 106
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ + S + + + S+P DL+ P+ P DI I +LG Q
Sbjct: 107 INKIGPASVMSGDIQAISHP--------------DLV------PVDP--DIPIVKLGAKQ 144
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
I + A A+ G K HAKW + Y+ E + + + ED K+ + CP +V
Sbjct: 145 AILITAEAILGTAKEHAKWQVTSGVAYKYHREFEVNKKLF-EDWAKIKERCPKSV----- 198
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
+ + C V I+ FIF E+ G+L+ E +
Sbjct: 199 LSEDENTIVFTDDYGCNDLSILFE-----SDGVQIKEDDSRFIFHFETDGSLTAEETLSY 253
Query: 366 AVKILEDKCERVITELS 382
A+ L D+ ++ LS
Sbjct: 254 ALNRLMDRWGILVESLS 270
>gi|407461953|ref|YP_006773270.1| RNA polymerase insert [Candidatus Nitrosopumilus koreensis AR1]
gi|407045575|gb|AFS80328.1| RNA polymerase insert [Candidatus Nitrosopumilus koreensis AR1]
Length = 221
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 47/213 (22%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L G+ ANA RR+ + +P AI+ V I NTSV+ DE LAHRL
Sbjct: 13 LEVISKDNQKIALKLKGVPLQYANALRRVCLNGVPVFAIDTVDIIENTSVLPDEGLAHRL 72
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ + +E K+ ++ + G + TV +NE+
Sbjct: 73 GLIPLKTDLSRFNEPSKCECQSEAGCSNCKVMLVLDSGDSDVTRTVLSNEI--------- 123
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
SS+D + I P+ D I I L PGQ+I++E +A
Sbjct: 124 ---------------------SSED-------DSITPISDKIPIVELAPGQKIKIECYAR 155
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDE 287
G G HAKW+ +A ML E D EDE
Sbjct: 156 LGRGTEHAKWN---SANISMLTET----DKEDE 181
>gi|396081532|gb|AFN83148.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
romaleae SJ-2008]
Length = 240
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 45/191 (23%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
LT + ++F L ANA RRILI+E+PT+AI+ V I N +V+ DEVLAHRLGL+P
Sbjct: 9 LTPERIKFTLSNATVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGLVP- 67
Query: 143 IVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
I R +Y E S + ++VF++ ++ R+
Sbjct: 68 IYSKRELKYKEECSCSGFCSECSVVFEIDIVHTEDALRVV-------------------- 107
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIR--PMLDITIARLGPGQEIELEAHAVKGIG 258
S++D++ + + I+ PM I +L Q ++ KGIG
Sbjct: 108 ----------------SARDIVCDEGDVVIKSGPM----ITKLARDQGLKARCIGRKGIG 147
Query: 259 KTHAKWSPVAT 269
K HAKWSPV+
Sbjct: 148 KIHAKWSPVSA 158
>gi|401826632|ref|XP_003887409.1| DNA-directed RNA polymerase II subunit RPB3 [Encephalitozoon hellem
ATCC 50504]
gi|395459927|gb|AFM98428.1| DNA-directed RNA polymerase II subunit RPB3 [Encephalitozoon hellem
ATCC 50504]
Length = 240
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 41/188 (21%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
LT ++F L ANA RRILI+E+PT+AI+ V I N +V+ DEVLAHRLGL+P
Sbjct: 9 LTAGHIKFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGLVP- 67
Query: 143 IVDPRLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
I R +Y E S + ++VF++ V+ R V T ++
Sbjct: 68 IYSKRSLKYKEECGCSGFCSECSVVFEIDVVHTEDTLR-AVSTRDI-------------- 112
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKT 260
+D++ + PI I +L Q ++ KGIGKT
Sbjct: 113 --------------ICDEEDVV--IKSGPI-------ITKLARDQGLKARCIGRKGIGKT 149
Query: 261 HAKWSPVA 268
H+KWSPV+
Sbjct: 150 HSKWSPVS 157
>gi|344305493|gb|EGW35725.1| hypothetical protein SPAPADRAFT_58923 [Spathaspora passalidarum
NRRL Y-27907]
Length = 302
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 86/193 (44%), Gaps = 28/193 (14%)
Query: 85 KDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIV 144
+D + F L + A AN+ RR ++AE+PT+AI+ V I NTSV+ DE +AHRLGLIP++
Sbjct: 19 RDHVNFILKNVSLASANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFIAHRLGLIPLV- 77
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
S + + C+ + +V+ EL + DS
Sbjct: 78 -------------SEGIENLTYSRDCTCDNYCSKCSVRL----------ELTAKCDSDST 114
Query: 205 PSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAK 263
S F + L P + R L I +L QE+ + A KGI K HAK
Sbjct: 115 MSVYASDLAKFHNGSRLGDPVIRDAQGRGSL---ICKLRKHQELRIVCIAKKGIAKEHAK 171
Query: 264 WSPVATAWYRMLP 276
WSP A + P
Sbjct: 172 WSPCAAVGFEYDP 184
>gi|55376999|ref|YP_134849.1| DNA-directed RNA polymerase subunit D [Haloarcula marismortui ATCC
43049]
gi|344211110|ref|YP_004795430.1| DNA-directed RNA polymerase subunit D [Haloarcula hispanica ATCC
33960]
gi|448640850|ref|ZP_21677637.1| DNA-directed RNA polymerase subunit D [Haloarcula sinaiiensis ATCC
33800]
gi|448651240|ref|ZP_21680309.1| DNA-directed RNA polymerase subunit D [Haloarcula californiae ATCC
33799]
gi|448667520|ref|ZP_21686020.1| DNA-directed RNA polymerase subunit D [Haloarcula amylolytica JCM
13557]
gi|448678705|ref|ZP_21689712.1| DNA-directed RNA polymerase subunit D [Haloarcula argentinensis DSM
12282]
gi|1350858|sp|Q00813.1|RPOD_HALMA RecName: Full=DNA-directed RNA polymerase subunit D
gi|148773|gb|AAA73212.1| ribosomal protein HmaRp-alpha subunit [Haloarcula marismortui]
gi|55229724|gb|AAV45143.1| DNA-directed RNA polymerase subunit D [Haloarcula marismortui ATCC
43049]
gi|343782465|gb|AEM56442.1| DNA-directed RNA polymerase subunit D [Haloarcula hispanica ATCC
33960]
gi|445761375|gb|EMA12623.1| DNA-directed RNA polymerase subunit D [Haloarcula sinaiiensis ATCC
33800]
gi|445770088|gb|EMA21156.1| DNA-directed RNA polymerase subunit D [Haloarcula amylolytica JCM
13557]
gi|445770767|gb|EMA21825.1| DNA-directed RNA polymerase subunit D [Haloarcula californiae ATCC
33799]
gi|445772692|gb|EMA23737.1| DNA-directed RNA polymerase subunit D [Haloarcula argentinensis DSM
12282]
Length = 259
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 128/315 (40%), Gaps = 77/315 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
++ VE + + + + GI A AN RR ++A++PT +I+ V + NTSV+ +E
Sbjct: 1 MTQDYEVEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ RLGL+P+ D FE
Sbjct: 61 QIGLRLGLVPLTTDLDDFEI---------------------------------------- 80
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
G E+ L D PS+ Y+S S D + E +++ I P++D L GQ +E+EA
Sbjct: 81 GDEVTLSLSVDG-PST---AYSSDLVSSDPMVEAADDNI-PIID-----LKEGQRLEVEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDAEKLVKTCPVNVFDIEDIGS 308
AV G+ HAK YR L ++ ++ D+ ED+D L
Sbjct: 131 DAVLDTGREHAKHQGGVAVGYRHLQQVEVVGDLGEFEDDDPNIL---------------R 175
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWE---------KRVSIRRVKDHFIFTIESTGALSP 359
G A+ A L +E++ K V + V + F+F +E+ G+ +
Sbjct: 176 GVIEEQAAEHAAGDATNGELVATDEFDNDLRNRYPGKDVEVSDVPNAFVFHVETDGSFTT 235
Query: 360 ETLFTEAVKILEDKC 374
E L AV+ L D+
Sbjct: 236 EELVLRAVETLRDRA 250
>gi|400600522|gb|EJP68196.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 350
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 135/333 (40%), Gaps = 72/333 (21%)
Query: 58 YASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIE 117
Y M VD + H V V+ +EF+L + + AN+ RR++ AE+PT+AI+
Sbjct: 6 YDPMMVDAEAEQPH------VTVLAADTTKVEFELSRTNLSFANSLRRVIQAEVPTVAID 59
Query: 118 KVLIANNTSVIQDEVLAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCER 174
V I NTSV+ DE +AHRLGLIP+ VD + + + E+ +I LH C
Sbjct: 60 LVEIEINTSVLADEFIAHRLGLIPLDSKDVDELNYSRDCDCEQYCEQCSITLTLHAKC-T 118
Query: 175 GGPRLTVKTNELKWLPNGSE-----LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNP 229
+ V +L + +G P+ T PD
Sbjct: 119 SDENMKVYARDL--IVDGRHATSIGTPIITDPDG-------------------------- 150
Query: 230 IRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE-DVEDED 288
+ +A+L QE+ L+ A KGI K HAKW P + + P L D+ E+
Sbjct: 151 ----VGCLLAKLRRDQELRLKCVAKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFEN 206
Query: 289 AEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFI 348
T P + + + G+ + +P + + F
Sbjct: 207 -----DTNPKDEWPVSKYGAWESEEQKNEP-------------------FNYDAKPERFY 242
Query: 349 FTIESTGALSPETLFTEAVKILEDKCERVITEL 381
F +E++G + P+ + +++L+ K ++ L
Sbjct: 243 FDVETSGGMEPDQIVQSGIRVLQQKIGGLLKGL 275
>gi|169608898|ref|XP_001797868.1| hypothetical protein SNOG_07533 [Phaeosphaeria nodorum SN15]
gi|111063879|gb|EAT84999.1| hypothetical protein SNOG_07533 [Phaeosphaeria nodorum SN15]
Length = 335
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 122/286 (42%), Gaps = 54/286 (18%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---VDPRLFEYMSEND 156
AN+ RR+++AE+PT+AI+ V + +NTSV+ DE + HRLGLIP+ VD L+ + +
Sbjct: 34 ANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHRLGLIPLSSRGVDDLLYARDCDCE 93
Query: 157 TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFS 216
+ +V L+ C G + V +L +E+ ++ +P S
Sbjct: 94 GYCDNCAVVLSLNAKC-TGSEIMKVFARDLV---------IESNRPNDEVGRPVITDSEG 143
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ I +L GQ I + A KGI K HAKW+P A+A
Sbjct: 144 TGS-----------------CIVKLRRGQAINMRCIAKKGIAKEHAKWAPSASA------ 180
Query: 277 EIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEW-E 335
I D P N D ++ A P+ R L G E +
Sbjct: 181 -IGFEYD-------------PANKLHHLDYWF-EENAAAEWPKDEE--RINLDGGPELPD 223
Query: 336 KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
+ V + F + +E+ G L P+ + T+ ++ L+ K VI EL
Sbjct: 224 TEFDHKAVPERFFYDVETVGGLDPDQIVTKGIETLQQKLASVIKEL 269
>gi|340624633|ref|YP_004743086.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
X1]
gi|339904901|gb|AEK20343.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
X1]
Length = 195
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 56/201 (27%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+E+PT AIE V NTS + DEVLAHRLGLIPI
Sbjct: 25 SFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPI--------------- 69
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P +G E+ + T P + Y+S
Sbjct: 70 ----------------KGVP------------VSGDEVIVLTISKEGPCT---VYSSDLK 98
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ P F N P I +L Q++ELE A+ G GK HAKW P ++ ++ +
Sbjct: 99 SESGEPAFENIP--------IVKLAEDQKLELETEALVGTGKIHAKWQPCNASYKQISND 150
Query: 278 IV--LLEDVEDEDAEKLVKTC 296
V +E + DAE ++++
Sbjct: 151 EVEFKIESFGNMDAEDIIRSS 171
>gi|45358885|ref|NP_988442.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
S2]
gi|45047751|emb|CAF30878.1| DNA-directed RNA polymerase, subunit D [Methanococcus maripaludis
S2]
Length = 180
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 56/200 (28%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+E+PT AIE V NTS + DEVLAHRLGLIPI
Sbjct: 10 SFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPI--------------- 54
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P +G E+ + T P + Y+S
Sbjct: 55 ----------------KGVPV------------SGDEVIVLTISKEGPCT---VYSSDLK 83
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ P F N P I +L Q++ELE A+ G GK HAKW P ++ ++ +
Sbjct: 84 SESGEPAFENIP--------IVKLAEDQKLELETEALVGTGKIHAKWQPCNASYKQISND 135
Query: 278 IV--LLEDVEDEDAEKLVKT 295
V +E + DAE ++++
Sbjct: 136 EVEFKIESFGNMDAEDIIRS 155
>gi|330947784|ref|XP_003306966.1| hypothetical protein PTT_20284 [Pyrenophora teres f. teres 0-1]
gi|311315237|gb|EFQ84939.1| hypothetical protein PTT_20284 [Pyrenophora teres f. teres 0-1]
Length = 334
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 130/315 (41%), Gaps = 59/315 (18%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
++ V + + F + + AN+ RR++++E+PT+AI+ V + +NTSV+ DE +
Sbjct: 8 DSINVRFLEASSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFV 67
Query: 134 AHRLGLIPII---VDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLP 190
HRLGLIP+ VD ++ + + + +V L+ C G + V +L
Sbjct: 68 CHRLGLIPLSSKGVDDLVYSRDCDCEGYCDNCAVVLSLNAKC-TGSEIMKVYARDLV--- 123
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+E++ ++ KP S + I +L GQ I +
Sbjct: 124 ------IESRTPNDEVGKPVITDSEGTGS-----------------CIVKLRRGQAINMR 160
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
A KGI K HAKW+P A + P L L+ +ED EK
Sbjct: 161 CIAKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDPEK----------------- 203
Query: 309 GKKRATVAQPRACTLCRECLRCG-EEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
P+ R L G E ++R V F + +E+ G + P+ + T+ +
Sbjct: 204 -------EWPK--DEARINLDGGPENPDERFDFDAVPTRFFYDVETVGGIDPDQIVTKGI 254
Query: 368 KILEDKCERVITELS 382
L+ K ++ L+
Sbjct: 255 HRLQLKLAEIVQGLN 269
>gi|336252152|ref|YP_004595259.1| DNA-directed RNA polymerase subunit D [Halopiger xanaduensis SH-6]
gi|335336141|gb|AEH35380.1| DNA-directed RNA polymerase subunit D [Halopiger xanaduensis SH-6]
Length = 249
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 127/305 (41%), Gaps = 67/305 (21%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + G+ A AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSEEYDVEFVERDDREARFLVRGVTPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P D E T+ + V GP T + +L+
Sbjct: 61 QLALRLGLVPLTTPP--------EDEFGEDATVTLSIDV----EGP-ATAYSGDLE---- 103
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS + + P N PI + D Q +E EA
Sbjct: 104 ------------------------SSDELVQPADENVPIIELKD--------DQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAE-KLVKTCPVNVFDIEDIGSG 309
AV GK HAK YR L +V+ +D+ E E++E ++V+ +ED G
Sbjct: 132 DAVLDRGKDHAKHQGAVAVGYRHLQRVVVEDDLPEFEESEAQIVRGV------VEDDGEL 185
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ + +K+VS+ V + F+F +E+ G+ + E L T A +
Sbjct: 186 VPTSEFDHDLSNRYP----------DKQVSVEDVPNAFVFHVETDGSFTVEELVTRAAET 235
Query: 370 LEDKC 374
+E +
Sbjct: 236 IESRA 240
>gi|448630480|ref|ZP_21673135.1| DNA-directed RNA polymerase subunit D [Haloarcula vallismortis ATCC
29715]
gi|445756403|gb|EMA07778.1| DNA-directed RNA polymerase subunit D [Haloarcula vallismortis ATCC
29715]
Length = 259
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 77/315 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
++ VE + + + + GI A AN RR ++A++PT +I+ V + NTSV+ +E
Sbjct: 1 MTQDYEVEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ RLGL+P+ D FE
Sbjct: 61 QIGLRLGLVPLTTDLDDFEI---------------------------------------- 80
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
G E+ L D P++ Y+S S D + E +++ I P++D L GQ +E+EA
Sbjct: 81 GDEVTLSLSVDG-PAT---AYSSDLVSSDPMVEAADDNI-PIID-----LKEGQRLEVEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDAEKLVKTCPVNVFDIEDIGS 308
AV G+ HAK YR L ++ ++ D+ ED+D L
Sbjct: 131 DAVLDTGREHAKHQGGVAVGYRHLQQVEVVGDLGEFEDDDPNIL---------------R 175
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWE---------KRVSIRRVKDHFIFTIESTGALSP 359
G A+ A L +E++ K V + V + F+F +E+ G+ +
Sbjct: 176 GVIEEQAAEHAAGDATNGELVATDEFDNDLRNRYPGKEVEVSDVPNAFVFHVETDGSFTT 235
Query: 360 ETLFTEAVKILEDKC 374
E L AV+ L D+
Sbjct: 236 EELVLRAVETLRDRA 250
>gi|432329429|ref|YP_007247573.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Aciduliprofundum sp. MAR08-339]
gi|432136138|gb|AGB05407.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Aciduliprofundum sp. MAR08-339]
Length = 273
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 127/301 (42%), Gaps = 66/301 (21%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNTSVIQDEVLAH 135
+ F++ GI A+ANA RR LI ++P +AI KV+ + ++++ + DE++AH
Sbjct: 13 IRFEIRGITPAMANALRRTLINDIPKLAIHKVIFHHGQIRDMEGKVYDSSTPLFDEIIAH 72
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ D + ++ E D ++ + + + GP TV + +L +P G +
Sbjct: 73 RLGLIPLPTDLNM-KFRDECDHPPDEGCPLCTVTYTLNKHGPA-TVYSGDL--IPVGDD- 127
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ P+ I I +L Q I LEA A+
Sbjct: 128 ------------------------------KFRPVDPL--IPIVKLKEHQAILLEAEAIM 155
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAE---KLVKTCPVNVFDIEDIGSGKKR 312
G K HAKW + Y+ EI V +D+E K+ +CP NV I ++
Sbjct: 156 GTAKEHAKWQVTSGVTYKYHREI----RVSKKDSELWQKVKDSCPKNV-----IKEDEEY 206
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
C E L E I HFIF E+ G+L+ A+K L+
Sbjct: 207 IVFTDDIPCKAMAELLSFEEP-----EIIEDDSHFIFEFETDGSLTAIDTLEYAIKRLKK 261
Query: 373 K 373
+
Sbjct: 262 R 262
>gi|50555259|ref|XP_505038.1| YALI0F05566p [Yarrowia lipolytica]
gi|49650908|emb|CAG77845.1| YALI0F05566p [Yarrowia lipolytica CLIB122]
Length = 314
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 30/181 (16%)
Query: 99 IANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI-IVDPRLFEYMSE--N 155
+AN+ RR+++AE+PT+AI+ V I+ NTSV+ DE ++HRLGLIP+ D EY +
Sbjct: 22 LANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVNDLEYSRDCVC 81
Query: 156 DTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSF 215
D +K ++V L C G + + + +L + T P+ KP YT
Sbjct: 82 DEYCDKCSVVLMLDATC-TGDDTMDIYSRDLM---------VHTTPERPELGKP-IYT-- 128
Query: 216 SSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 275
+P + I I +L Q + ++ A KGI K HAKWSP A +
Sbjct: 129 ------------DPAKK--GILICKLRKNQSLRIKCIAKKGIAKEHAKWSPCAAIGFEYD 174
Query: 276 P 276
P
Sbjct: 175 P 175
>gi|189199142|ref|XP_001935908.1| DNA-directed RNA polymerase subunit D [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983007|gb|EDU48495.1| DNA-directed RNA polymerase subunit D [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 334
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 122/289 (42%), Gaps = 59/289 (20%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---VDPRLFEYMSEND 156
AN+ RR++++E+PT+AI+ V + +NTSV+ DE + HRLGL+P+ VD ++ + +
Sbjct: 34 ANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRLGLVPLSSKGVDDLIYSRDCDCE 93
Query: 157 TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFS 216
+ +V L+ C G + V +L +E++ ++ KP S
Sbjct: 94 GYCDNCAVVLSLNAKC-TGSEIMKVYARDLV---------IESRTPNDEVGKPVITDSEG 143
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ I +L GQ I + A KGI K HAKW+P A + P
Sbjct: 144 TGS-----------------CIVKLRRGQAINMRCIAKKGIAKEHAKWAPSAAIGFEYDP 186
Query: 277 EIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG-EE 333
L L+ +ED EK P+ R L G E
Sbjct: 187 ANKLHHLDYWHEEDPEK------------------------EWPK--DEARINLDGGPEN 220
Query: 334 WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
++R V F + +E+ G + P+ + T+ + L+ K ++ L+
Sbjct: 221 PDERFDFDAVPTRFFYDVETVGGIDPDQIVTKGIHRLQLKLAEIVQGLN 269
>gi|254167082|ref|ZP_04873935.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|197623938|gb|EDY36500.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
Length = 273
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 60/298 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNTSVIQDEVLAH 135
++F++ GI ++ANA RR LI ++P +AI KV+ + ++++ + DE++AH
Sbjct: 13 IKFEIKGITPSVANALRRTLINDIPKLAIHKVIFHHGQIRDMEGNVYDSSTPLFDEIIAH 72
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGLIP+ D + ++ E D ++ + + + GP TV + +L +P G E
Sbjct: 73 RLGLIPLPTDLNM-KFRDECDHPPDEGCPLCTVTYTLNKHGPA-TVYSGDL--IPVGDE- 127
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P+ P+ I I +L Q I LEA A+
Sbjct: 128 ------------------------------KFKPVDPL--IPIVKLKEHQAILLEAEAIM 155
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATV 315
G K HAKW + Y+ EI + + E EK+ K+CP NV +D K
Sbjct: 156 GTAKEHAKWQVTSGVSYKYHREIK-VNKKDSELWEKVKKSCPKNVIKEDD-----KFIIF 209
Query: 316 AQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
C E L + I FIF E+ G+L A+K L+ +
Sbjct: 210 TDDMPCKEIAEILSF-----ENPEITEDDSWFIFEFETDGSLKAIDTLEYAIKRLKTR 262
>gi|150401521|ref|YP_001325287.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
gi|150014224|gb|ABR56675.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
Length = 197
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 54/192 (28%)
Query: 86 DDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD 145
+ ++F + G + ++A RRI+++ +PT AIE V N+S + DE+LAHRL LIPI
Sbjct: 14 ETLKFTIGGAPISFSSALRRIMVSSVPTYAIENVYFYENSSSMYDEILAHRLALIPITGK 73
Query: 146 PRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNP 205
P + S+E V + ++ E GP TV + +L+
Sbjct: 74 PVI---------SDE----VVRFSIMKE--GP-CTVYSADLE------------------ 99
Query: 206 SSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWS 265
S D + F N P I +L GQ++ELE A+ G+GK HAKW
Sbjct: 100 -----------SESDSMVAFDNIP--------IVKLKEGQKLELECEALVGVGKNHAKWQ 140
Query: 266 PVATAWYRMLPE 277
P A Y+++ +
Sbjct: 141 P-CNASYKLIKD 151
>gi|254167792|ref|ZP_04874642.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|289597072|ref|YP_003483768.1| RNA polymerase insert [Aciduliprofundum boonei T469]
gi|197623320|gb|EDY35885.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|289534859|gb|ADD09206.1| RNA polymerase insert [Aciduliprofundum boonei T469]
Length = 273
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 50/238 (21%)
Query: 80 VIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNTSV 127
++ L ++F++ GI ++ANA RR LI ++P +AI KV+ + ++++
Sbjct: 5 ILELQDRYIKFEIKGITPSVANALRRTLINDIPKLAIHKVIFHHGQIRDMEGNVYDSSTP 64
Query: 128 IQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELK 187
+ DE++AHRLGLIP+ D + ++ E D ++ + + + GP TV + +L
Sbjct: 65 LFDEIIAHRLGLIPLPTDLNM-KFRDECDHPPDEGCPLCTVTYTLNKHGPA-TVYSGDL- 121
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
+P G E P+ P+ I I +L Q I
Sbjct: 122 -IPVGDE-------------------------------KFKPVDPL--IPIVKLKEHQAI 147
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
LEA A+ G K HAKW + Y+ EI + + E EK+ K+CP NV +D
Sbjct: 148 LLEAEAIMGTAKEHAKWQVTSGVSYKYHREIK-VNKKDSELWEKVKKSCPKNVIKEDD 204
>gi|448689118|ref|ZP_21694855.1| DNA-directed RNA polymerase subunit D [Haloarcula japonica DSM
6131]
gi|445778988|gb|EMA29930.1| DNA-directed RNA polymerase subunit D [Haloarcula japonica DSM
6131]
Length = 259
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 77/315 (24%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
++ VE + + + + GI A AN RR ++A++PT +I+ V + NTSV+ +E
Sbjct: 1 MTQDYEVEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ RLGL+P+ D FE
Sbjct: 61 QIGLRLGLVPLTTDLDDFEI---------------------------------------- 80
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
G E+ L D P++ Y+S S D + E +++ I P++D L GQ +E+EA
Sbjct: 81 GDEVTLSLSVDG-PAT---AYSSDLVSSDPMVEAADDNI-PIID-----LKEGQRLEVEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDAEKLVKTCPVNVFDIEDIGS 308
AV G+ HAK YR L ++ ++ D+ ED+D L
Sbjct: 131 DAVLDTGREHAKHQGGVAVGYRHLQQVEVVGDLGEFEDDDPNIL---------------R 175
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWE---------KRVSIRRVKDHFIFTIESTGALSP 359
G A+ A L +E++ K V + V + F+F +E+ G+ +
Sbjct: 176 GVIEEQAAEHAAGDATNGELVATDEFDNDLRNRYPGKDVEVSDVPNAFVFHVETDGSFTT 235
Query: 360 ETLFTEAVKILEDKC 374
E L AV+ L D+
Sbjct: 236 EELVLRAVETLRDRA 250
>gi|150399384|ref|YP_001323151.1| RNA polymerase insert [Methanococcus vannielii SB]
gi|150012087|gb|ABR54539.1| RNA polymerase insert [Methanococcus vannielii SB]
Length = 195
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 56/200 (28%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RR++I+E+PT AIE V NTS + DEVLAHRLGLIP+ P
Sbjct: 25 SFSSALRRLMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPVKGVP----------- 73
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+ +VF L + GP TV +++LK E+ E P
Sbjct: 74 VSGDEVVVFTLS----KEGP-CTVYSSDLK--SEAGEIAFENIP---------------- 110
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
I +L GQ++E EA A+ G GK HAKW P + ++ +
Sbjct: 111 --------------------IVKLAEGQKLEFEAEALVGTGKFHAKWQPCNVVYKQISND 150
Query: 278 IV--LLEDVEDEDAEKLVKT 295
V +E + DAE ++++
Sbjct: 151 EVEFTIESFGNMDAEDIIRS 170
>gi|16082064|ref|NP_394490.1| DNA-directed RNA polymerase subunit D [Thermoplasma acidophilum DSM
1728]
gi|13124516|sp|Q9HJD9.1|RPOD_THEAC RecName: Full=DNA-directed RNA polymerase subunit D
gi|10640345|emb|CAC12159.1| DNA-dependent RNA polymerase, subunit D related protein
[Thermoplasma acidophilum]
Length = 271
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 127/317 (40%), Gaps = 61/317 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNT 125
V++ +L+ + F++ GI + ANA RR LI ++P +AIE V + +++
Sbjct: 3 VKIFKLSDKYIRFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDSEGNVYDSS 62
Query: 126 SVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
+ DE++AHRLGLIP+ D T+ F+ C G L T
Sbjct: 63 LPLFDEMVAHRLGLIPLKTDL----------------TMNFRDQCSCGGKGCSLCTVTYS 106
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ L + + + S+P DL+P P I +LGP Q
Sbjct: 107 INKLGPSTVFSSDLQAVSHP--------------DLIPVDGEIP--------IVKLGPKQ 144
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
I + A A+ G K HAKW + Y+ E + + + ED +KL CP +V D
Sbjct: 145 AILITAEAILGTAKEHAKWQVTSGVSYKYHREFHVSKK-DFEDWQKLKGACPKSVMSETD 203
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
C V++ FIF E+ G+L+ +
Sbjct: 204 -----TEIVFTDDFGCNDLNVLFE-----SDGVNMIEDDSRFIFQFETDGSLTAKETLLY 253
Query: 366 AVKILEDKCERVITELS 382
A+ L+D+ + ++ LS
Sbjct: 254 ALNRLKDRWDILVESLS 270
>gi|386876610|ref|ZP_10118709.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386805572|gb|EIJ65092.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 221
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 40/196 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L G+ ANA RR+ + +P AI+ V I N+SV+ DE LAHRL
Sbjct: 13 LEVISKDNHKISIKLKGVPLQYANALRRVCLNGVPVFAIDTVDIVENSSVLPDEGLAHRL 72
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ + +E K+ ++ + G + T+ +NEL
Sbjct: 73 GLIPLKTDLARFNEPSKCECQSETGCSNCKVMLVLDSGDSDVTRTILSNEL--------- 123
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
SS+D + ++P+ D I I +L PGQ I++E +A
Sbjct: 124 ---------------------SSED-------DTVKPVSDKIPIVQLAPGQRIKVECYAR 155
Query: 255 KGIGKTHAKWSPVATA 270
G G HAKW+ A
Sbjct: 156 LGRGTEHAKWNATNIA 171
>gi|48478294|ref|YP_024000.1| DNA-directed RNA polymerase subunit D [Picrophilus torridus DSM
9790]
gi|55976419|sp|Q6KZP5.1|RPOD_PICTO RecName: Full=DNA-directed RNA polymerase subunit D
gi|48430942|gb|AAT43807.1| DNA-directed RNA polymerase subunit D [Picrophilus torridus DSM
9790]
Length = 271
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 129/317 (40%), Gaps = 60/317 (18%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNT 125
+++I L + ++F + GI AIAN+ RR LI ++P +AIE V+ + +++
Sbjct: 2 LDIIELKDNYIKFSISGITPAIANSIRRTLINDIPKLAIENVVFHHGEIRDSEGNVYDSS 61
Query: 126 SVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNE 185
+ DEV+A RLGLIP+ D ++ F+ C G L
Sbjct: 62 LPLFDEVVALRLGLIPLKTDLKM----------------NFRDQCSCNGEGCDLCTVKYS 105
Query: 186 LKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQ 245
+ L + P +NP K P+ PM I I +L GQ
Sbjct: 106 INKLGPADVFSSDLIPINNPDLK--------------------PVDPM--IPIVKLKKGQ 143
Query: 246 EIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIED 305
+ + A+ G GK HAKW + Y+ E + ++ E E+ CP +V
Sbjct: 144 AMLVTCEAIMGRGKDHAKWQVTSGVSYKYHREFKINKN-ELENWSFYKDKCPKSV----- 197
Query: 306 IGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTE 365
I + T C ++ + + V+I FIF E+ G+L+
Sbjct: 198 ISENENEITFTDDVECRYLQQLF----DEKSGVTITEDDTKFIFQFETDGSLTAIETLDY 253
Query: 366 AVKILEDKCERVITELS 382
A+K L+++ ++ LS
Sbjct: 254 ALKRLKERFNNLMESLS 270
>gi|161527936|ref|YP_001581762.1| RNA polymerase insert [Nitrosopumilus maritimus SCM1]
gi|160339237|gb|ABX12324.1| RNA polymerase insert [Nitrosopumilus maritimus SCM1]
Length = 221
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 92/203 (45%), Gaps = 43/203 (21%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L G+ ANA RR+ + +P A++ V I N+SV+ DE LAHRL
Sbjct: 13 LEVISKDNQKIALKLKGVPLQYANALRRVCLNGVPVFAVDTVDIIENSSVLPDEGLAHRL 72
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ + +E K+ ++ + G + TV +NEL
Sbjct: 73 GLIPLKTDLSRFNEPSKCECQSETGCSNCKVMLVLDSGDSDVTRTVLSNEL--------- 123
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
SS+D + I P+ D I I L PGQ I++E +A
Sbjct: 124 ---------------------SSED-------DSITPISDKIPIVELAPGQRIKVECYAR 155
Query: 255 KGIGKTHAKWSPVATAWYRMLPE 277
G G HAKW+ +A ML E
Sbjct: 156 LGRGTEHAKWN---SANVSMLTE 175
>gi|448352729|ref|ZP_21541510.1| DNA-directed RNA polymerase subunit D [Natrialba hulunbeirensis JCM
10989]
gi|448358769|ref|ZP_21547445.1| DNA-directed RNA polymerase subunit D [Natrialba chahannaoensis JCM
10990]
gi|445642008|gb|ELY95079.1| DNA-directed RNA polymerase subunit D [Natrialba hulunbeirensis JCM
10989]
gi|445644783|gb|ELY97792.1| DNA-directed RNA polymerase subunit D [Natrialba chahannaoensis JCM
10990]
Length = 249
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 127/302 (42%), Gaps = 69/302 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + D F + GI A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDRDARFLVQGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P + E++ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLTT-PPVGEFV-------EDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS DL+ P N PI + D GQ +E EA AV
Sbjct: 103 --------------------VSSDDLVQPADENVPIIDLKD--------GQRLEAEADAV 134
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGKKR 312
GK HAK YR L + +ED+ +E ++V+ IE+ G
Sbjct: 135 LDRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEEPDRRIVRGV------IEEDGELVPT 188
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ + G+E V++ V + F+F +E+ G+ S E L T A +E
Sbjct: 189 SEFDHDLSNRY------PGQE----VTLEDVPNSFVFHVETDGSFSVEELVTRAADTIES 238
Query: 373 KC 374
+
Sbjct: 239 RA 240
>gi|336371374|gb|EGN99713.1| hypothetical protein SERLA73DRAFT_88301 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384130|gb|EGO25278.1| DNA-directed RNA polymerase II, subunit 3 [Serpula lacrymans var.
lacrymans S7.9]
Length = 400
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 34/212 (16%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V + + KD + F L +D A AN+ RR ++A++PT+AI+ V I NT+V+ DE +AHRL
Sbjct: 11 VRIREVKKDRVNFVLENVDLAFANSVRRAVMADIPTIAIDIVEIEANTTVLPDEFIAHRL 70
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGP------RLTVKTNELKWLPN 191
G++P++ ++N + I + C G RL V +E +
Sbjct: 71 GMVPLV-------------SANCEEGIRYTRDCTCLSGCQYCSIELRLDVACHENR---- 113
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-------ITIARLGPG 244
+E + TY + + L + N P+ + I ++ G
Sbjct: 114 ----TMEVTSNHLDVVDSHTYADEGEAGEELTKRGENFGHPVGKDDVSLPPVLICKMRKG 169
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
QE++L A KGI K HAKWSP + + P
Sbjct: 170 QELKLRCIAKKGIAKEHAKWSPCSAVSFEYDP 201
>gi|396463947|ref|XP_003836584.1| hypothetical protein LEMA_P041200.1 [Leptosphaeria maculans JN3]
gi|312213137|emb|CBX93219.1| hypothetical protein LEMA_P041200.1 [Leptosphaeria maculans JN3]
Length = 336
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 119/288 (41%), Gaps = 57/288 (19%)
Query: 100 ANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII---VDPRLFEYMSEND 156
AN+ RR++++E+PT+AI+ V + +NTSV+ DE + HRLGLIP+ VD L+ + +
Sbjct: 34 ANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRLGLIPLCSKGVDDLLYSRDCDCE 93
Query: 157 TSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFS 216
++V L+ C NE+ + +L +E+ ++ +P +
Sbjct: 94 GYCSNCSVVLTLNAKC---------TGNEIMKV-YARDLVVESMTPNDEVGRPVITDADG 143
Query: 217 SSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLP 276
+ I +L GQ I + A KGI K HAKW+P A + P
Sbjct: 144 TGS-----------------CIVKLRRGQAIHMRCIAKKGIAKEHAKWAPSAAIGFEYDP 186
Query: 277 EIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEW 334
L L+ +ED +K D + I A +P
Sbjct: 187 ANKLHHLDYWHEEDPDKEWPK------DEDRINLDGGPANPDEP---------------- 224
Query: 335 EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
F + +E+ G L P+ + + + +L+ K +I EL+
Sbjct: 225 ---FDYNAAPTRFFYDVETVGGLDPDQIVGKGITVLQHKLAGIIAELT 269
>gi|448368976|ref|ZP_21555743.1| DNA-directed RNA polymerase subunit D [Natrialba aegyptia DSM
13077]
gi|445651519|gb|ELZ04427.1| DNA-directed RNA polymerase subunit D [Natrialba aegyptia DSM
13077]
Length = 249
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 125/301 (41%), Gaps = 67/301 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + D F + GI A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLSTPPE-GEF-------GEDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + + P N PI + D Q +E EA AV
Sbjct: 103 -------------------ISSDELVQPADENVPIIDLKD--------DQRLEAEADAVL 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAE-KLVKTCPVNVFDIEDIGSGKKRA 313
GK HAK YR L + +ED+ E ED+E ++V+ IED G +
Sbjct: 136 DRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDSESRIVRGV------IEDDGELVPTS 189
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ K V++ V + F+F +E+ G+ + E L T A + +E +
Sbjct: 190 EFDHDLSNRYPG----------KDVTVEDVPNAFVFHVETDGSFTVEDLVTRAAETIESR 239
Query: 374 C 374
Sbjct: 240 A 240
>gi|346972452|gb|EGY15904.1| DNA-directed RNA polymerase II subunit RPB3 [Verticillium dahliae
VdLs.17]
Length = 342
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 134/319 (42%), Gaps = 59/319 (18%)
Query: 69 LDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
LD+ V++ D + F+L + AN+ RR++ AE+P +AI+ V I NTSV+
Sbjct: 8 LDNEVGGPSVKISNTEADRVVFNLSNCHLSFANSLRRVIQAEVPIVAIDLVEIEANTSVL 67
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
DE +AHRLGLIP+ S E ++ + CE+ +VK
Sbjct: 68 ADEFIAHRLGLIPL--------------HSKEAASLHYSRDCDCEQYCDNCSVK------ 107
Query: 189 LPNGSELPLETKPDSNPSSKPRT----YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
L L + S+ K SF + + +P L IA+L G
Sbjct: 108 ------LTLHARCTSDDIMKVYASDLVVDSFRQNNTVGNPVITDP--DGLGSLIAKLRRG 159
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIE 304
QE+++ A KGI K HAKW P + + P L ++++
Sbjct: 160 QELKVTCIAKKGIAKEHAKWMPTSAVGFEYDPHNKLHH---------------IDLWYET 204
Query: 305 DIGSGKKRATVAQPRACTLCRE-CLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLF 363
D A P++ +E + GE ++ R F F +E+ G+L P+ +
Sbjct: 205 D-------AATEWPKSRNADQEDPPQEGEPFDFDAKPGR----FYFDVETVGSLDPDQII 253
Query: 364 TEAVKILEDKCERVITELS 382
E +KI+++K ++ L+
Sbjct: 254 QEGIKIMQEKLALMLHTLT 272
>gi|358397037|gb|EHK46412.1| hypothetical protein TRIATDRAFT_153717, partial [Trichoderma
atroviride IMI 206040]
Length = 377
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 127/298 (42%), Gaps = 56/298 (18%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI---IV 144
++F+L + ANA RRI+ AE+PT+AI+ V I N+SV+ DE +AHRLGLIP+ V
Sbjct: 30 VDFELSRTNLPFANALRRIIQAEVPTIAIDLVEIEVNSSVLADEFIAHRLGLIPLDSKGV 89
Query: 145 DPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
+ + + + E ++ LH C +K + +G
Sbjct: 90 NELNYSRDCDCEQYCEHCSVSLTLHAKCTS---DEIMKVYARDLVVDG------------ 134
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
R S ++ PE L IA+L GQE+++ A KGI K HAKW
Sbjct: 135 -----RHAGSVGNAVITDPE--------GLGCLIAKLRKGQELKITCIAKKGIAKEHAKW 181
Query: 265 SPVATAWYRMLPEIVLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
P + + P L D+ E+ K P ++ AQ
Sbjct: 182 MPTSAVGFEYDPHNKLHHLDMWFENNTDPEKEWP--------------KSKYAQ------ 221
Query: 324 CRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
E L+ GE + S V + F F +E++G + P+ + +++L+ K ++ L
Sbjct: 222 WEEPLQEGEPF----SYDAVPNRFYFEVEASGTMEPDLIIQGGIRVLQQKIGGLLKGL 275
>gi|374327628|ref|YP_005085828.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
gi|356642897|gb|AET33576.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
Length = 260
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 129/300 (43%), Gaps = 79/300 (26%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVD----PRLF 149
G+ + N+ RR++I+ELP MAI+ V++ NNTSV+ DE+LAHRLGLIP+ P +
Sbjct: 20 GVPPTLINSLRRVIISELPVMAIDSVVVVNNTSVMYDEMLAHRLGLIPLTTPLSALPPIE 79
Query: 150 EYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKP 209
+ +S +E + +L + G LTV + +L + +PD P K
Sbjct: 80 DCVSGLADPSECSA---RLTLQVTADGD-LTVYSGDL----------VSERPDVAPVYK- 124
Query: 210 RTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT 269
DI I +L GQ I LEA+A G+ + HAKW A
Sbjct: 125 -------------------------DIPIVKLVKGQSIVLEAYAKLGVARDHAKWQ-AAL 158
Query: 270 AWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL-----C 324
A Y P + E +E E+ + C A + P CT C
Sbjct: 159 ASYYYYPRV---EVRNEECRERCREIC----------------AKLEDPIECTFNKAWTC 199
Query: 325 RECLRCGEE--WEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+ + G E WE ++ ++F IES G ET EA +IL+ K ELS
Sbjct: 200 KNLCKDGLEVTWE--------RNKYVFWIESYGNYDVETALREAFRILKKKFAFFAEELS 251
>gi|193875760|gb|ACF24516.1| DNA-directed RNA polymerase I [Gymnochlora stellata]
Length = 230
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 31/241 (12%)
Query: 150 EYMSENDTSNEKNTIVFKL---HVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPS 206
++++N +E+ TIV L ++ C++ + V ++LKW GS +P + SN
Sbjct: 8 NFITKNIIIDEEYTIVMLLKEINLSCKKYYNK-NVFAHKLKWNRFGSRIPFQ----SNTF 62
Query: 207 SKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSP 266
K + SS DL + S+ D+ + +L P Q++ +E HA K IG H+K+SP
Sbjct: 63 FKKK-----QSSIDLCFKPSHQ------DVILTKLKPLQKLFIECHAKKSIGLVHSKYSP 111
Query: 267 VATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP------RA 320
V+ AW+ + ++ K+ N F + K R P +
Sbjct: 112 VSVAWFSLFTISFFIKSTIYFKNYLCSKSKEYN-FSLNQY-KFKHRNVYRYPNLNNPYQN 169
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
+ LR EK +I R HFIFTIES GAL PE + EA+ I+ K + +
Sbjct: 170 TSYTNFLLRLN---EKTFNINRY-GHFIFTIESIGALKPEFILIEAINIIHRKIFKFCSN 225
Query: 381 L 381
Sbjct: 226 F 226
>gi|332017912|gb|EGI58566.1| DNA-directed RNA polymerase II subunit RPB3 [Acromyrmex echinatior]
Length = 256
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 71/312 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + + ++AN+ RR+ IAE PTMAI+ + + N++V+
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVV--- 59
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
I D + ++ E ++ F L V C R V T + K
Sbjct: 60 ------DRIQYTRDCQCMDFCPEC-------SVEFTLDVKCTEEQTR-HVTTADFK---- 101
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSS-QDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
SS PR S +D E+ +I I +L GQE++L
Sbjct: 102 --------------SSDPRVLPVTSRHREDDASEYGETD-----EILIVKLRKGQELKLR 142
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
A+A KG GK HAKW+P A + P+ T +F D
Sbjct: 143 AYAKKGFGKEHAKWNPTAGVSFEYDPD----------------NTMRHTLFPKADEWPKS 186
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
+ + + + +++E + + + F +ES+GAL PE + + L
Sbjct: 187 EYSELEE--------------DQYEASFNWEAKPNKYYFNVESSGALKPENIVMMGIAAL 232
Query: 371 EDKCERVITELS 382
++K + T+LS
Sbjct: 233 KNKLSNLQTQLS 244
>gi|448361735|ref|ZP_21550348.1| DNA-directed RNA polymerase subunit D [Natrialba asiatica DSM
12278]
gi|445649415|gb|ELZ02352.1| DNA-directed RNA polymerase subunit D [Natrialba asiatica DSM
12278]
Length = 249
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 124/301 (41%), Gaps = 67/301 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + D F + GI A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLTTPPE-GEF-------GEDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + + P N PI + D Q +E EA AV
Sbjct: 103 -------------------ISSDELVQPADENVPIIDLKD--------DQRLEAEADAVL 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAE-KLVKTCPVNVFDIEDIGSGKKRA 313
GK HAK YR L + +ED+ E ED E ++V+ IED G +
Sbjct: 136 DRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDPESRIVRGV------IEDDGELVPTS 189
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ K V++ V + F+F +E+ G+ + E L T A + +E +
Sbjct: 190 EFDHDLSNRYPG----------KDVTVEDVPNAFVFHVETDGSFTVEDLVTRAAETIESR 239
Query: 374 C 374
Sbjct: 240 A 240
>gi|448414206|ref|ZP_21577345.1| DNA-directed RNA polymerase subunit D [Halosarcina pallida JCM
14848]
gi|445682499|gb|ELZ34916.1| DNA-directed RNA polymerase subunit D [Halosarcina pallida JCM
14848]
Length = 260
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 82/318 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+F VE I F + G+ A+AN RR +IA++PT +++ V N+SV+ DE
Sbjct: 1 MAEDFEVEFIERDDRKARFLVRGMTPAVANGIRRAMIADVPTFSVDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
++ RLGL+P+ D FE E + + L V GP
Sbjct: 61 MIGLRLGLVPLTTDLGDFE---------EGDVVTLALDVE----GP-------------- 93
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELE 250
T++S E S+ ++P ++ I L GQ +ELE
Sbjct: 94 --------------------ATAYSGD----IETSDGLVQPADQNVPIIELKEGQRLELE 129
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
A AV G GK HAK YR L + ++ D + D ++ P N+
Sbjct: 130 ADAVLGRGKEHAKHQGGVAVGYRHLHRVEVVGDANEFDEQE-----P-NIL--------- 174
Query: 311 KRATVAQPRACTLCRECLRCGE---------EWEKRVSIRRVKDH-----FIFTIESTGA 356
R + + A E + G+ + KR + V+ H F+F +E+ G+
Sbjct: 175 -RGVIEEQAAEHAADEGAQNGDLVPTEAFDNDLAKRYPGKEVEVHDVPGAFVFHVETDGS 233
Query: 357 LSPETLFTEAVKILEDKC 374
+ E L AV+ + D+
Sbjct: 234 FTVEELVRRAVESISDRA 251
>gi|448728476|ref|ZP_21710804.1| DNA-directed RNA polymerase subunit D [Halococcus saccharolyticus
DSM 5350]
gi|445796958|gb|EMA47443.1| DNA-directed RNA polymerase subunit D [Halococcus saccharolyticus
DSM 5350]
Length = 248
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 123/302 (40%), Gaps = 70/302 (23%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ V I D F + GI A AN RR ++A++PT++++ V + N+SV+ DE + H
Sbjct: 5 YDVAFIDRDDRDARFLVRGITPAFANGIRRAMVADVPTLSVDTVRVVENSSVMFDEQIGH 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLG++P+ P FE +++ L V
Sbjct: 65 RLGMVPLSAPPNEFE---------PDDSVTLGLDV------------------------- 90
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
+ PD+ + S DL+ S++ + P D + I L Q +E+EA AV
Sbjct: 91 ---SGPDT------------AYSGDLVS--SDSVVEPAEDNVPIIELKEDQRLEVEAEAV 133
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRAT 314
GK+HAK YR L ++ ++ D E+ P N+ R
Sbjct: 134 LDTGKSHAKHQGGVAVGYRHLQKVEVV-----GDREEFADEEP-NIL----------RGV 177
Query: 315 VAQPRACTLCRECLR--CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ + E K V++ V + F+F +E+ G+L+ E L T AV LE
Sbjct: 178 IEEDGELIPTEEFDNDLTNRYPGKEVTVEDVPNAFVFHVETDGSLTVEELVTAAVDSLET 237
Query: 373 KC 374
+
Sbjct: 238 RA 239
>gi|448348754|ref|ZP_21537602.1| DNA-directed RNA polymerase subunit D [Natrialba taiwanensis DSM
12281]
gi|445642415|gb|ELY95483.1| DNA-directed RNA polymerase subunit D [Natrialba taiwanensis DSM
12281]
Length = 249
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 124/301 (41%), Gaps = 67/301 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + D F + GI A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLSTPPE-GEF-------GEDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + + P N PI + D Q +E EA AV
Sbjct: 103 -------------------ISSDELVQPADENVPIIDLKD--------DQRLEAEADAVL 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAE-KLVKTCPVNVFDIEDIGSGKKRA 313
GK HAK YR L + +ED+ E ED E ++V+ IED G +
Sbjct: 136 DRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDPESRIVRGV------IEDDGELVPTS 189
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ K V++ V + F+F +E+ G+ + E L T A + +E +
Sbjct: 190 EFDHDLSNRYPG----------KDVTVEDVPNAFVFHVETDGSFTVEDLVTRAAETIESR 239
Query: 374 C 374
Sbjct: 240 A 240
>gi|291334097|gb|ADD93769.1| putative RNA polymerase Rpb3/Rpb11 dimerisation domain protein
[uncultured marine bacterium MedDCM-OCT-S05-C222]
Length = 310
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 133/311 (42%), Gaps = 45/311 (14%)
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVL------------IANNTSVIQDEVLAHRLGL 139
L DAA NA RR LIA++P +AI+KV I + +V+ DEV+AHRL +
Sbjct: 19 LSNTDAAQVNAVRRALIADVPKLAIDKVNFTQGVNQDNKGEILESVNVLPDEVIAHRLAM 78
Query: 140 IPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLET 199
IPI P M +D N K+ L E +T + E P E
Sbjct: 79 IPIPTHPDE-GMMHPDDCPNCKD--------LAEESKGCMTCQV----LYHIRKEGPSE- 124
Query: 200 KPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGK 259
DS + + ++ D + + + R I + L GQ +EL A A G G+
Sbjct: 125 --DSEETVRTVYAGDLTNISDQMFDIRDEHKR----IPLTVLSKGQFLELYAFATLGRGR 178
Query: 260 THAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS---GKKRATVA 316
H+KWSPVA +R + + K++ + D I + GK +
Sbjct: 179 QHSKWSPVAAVGFRQH----CIAKLNKPKKAKVLFDLGLTTSDGNPIDAKLFGKDKTMTD 234
Query: 317 QPRACTLCRECLRCGE------EWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
L + + G E++ +++ V+ +IFT E+ G+LSPE F A+ L
Sbjct: 235 VNHLLDLEKALHQVGPGTNRDVEFDDAITLEPVEGSYIFTYETDGSLSPEQAFNGAMMEL 294
Query: 371 EDKCERVITEL 381
+ + + + +++
Sbjct: 295 QGRFDNLASDI 305
>gi|313232341|emb|CBY09450.1| unnamed protein product [Oikopleura dioica]
Length = 164
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 36/183 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
R+E I+ ++ +F + D ++ANA RR+ +AE+P +AI+ + I NT+V+ DE LAHR
Sbjct: 10 RIEEIK--DENCKFSIENTDLSVANALRRVWLAEVPVLAIDWIRIEENTTVLIDEFLAHR 67
Query: 137 LGLIPI----IVDPRLFEYMSENDTSNEKN--TIVFKLHVLCERGGPRLTVKTNELKWLP 190
L LIP+ +VD +Y+ + N N T+ F L V C+ R TV T +L
Sbjct: 68 LALIPLHCEEVVDK--MQYIRDCSCDNFCNDCTVEFTLDVTCDTDATR-TVTTADL---- 120
Query: 191 NGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELE 250
NPS +P + S D SN I I +L GQ ++L
Sbjct: 121 ----------ISGNPSVQP----ALGKSDDDYNRDSNQ-------ILIVKLRKGQTLKLT 159
Query: 251 AHA 253
AHA
Sbjct: 160 AHA 162
>gi|448611952|ref|ZP_21662382.1| DNA-directed RNA polymerase subunit D [Haloferax mucosum ATCC
BAA-1512]
gi|445742713|gb|ELZ94207.1| DNA-directed RNA polymerase subunit D [Haloferax mucosum ATCC
BAA-1512]
Length = 260
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 124/307 (40%), Gaps = 62/307 (20%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F VE I F + G+ A+AN RR ++A++PT +I+ V NTSV+ DE+
Sbjct: 2 ANDFEVEFIEREDRRARFVVHGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE DT + V E GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDDFE---PGDT----------VTVALEVDGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMIVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
AV G GK HAK YR L + ++ D + D ++ P + + + + +
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQE-----PNILRGVIEEAAAEHA 186
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH-----FIFTIESTGALSPETLFTEAV 367
+ + G + KR + V+ H F+F++E+ G+ S + L AV
Sbjct: 187 DDEDAEDGDLVVTDAF--GNDLTKRYPGKEVEVHDVPGAFVFSVETDGSFSVDELMKRAV 244
Query: 368 KILEDKC 374
L D+
Sbjct: 245 ASLGDRA 251
>gi|297618745|ref|YP_003706850.1| RNA polymerase insert [Methanococcus voltae A3]
gi|297377722|gb|ADI35877.1| RNA polymerase insert [Methanococcus voltae A3]
Length = 188
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 56/200 (28%)
Query: 98 AIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDT 157
+ ++A RRI+I+ELPT AIE V NTS + DEVLAHRLG++PI
Sbjct: 21 SFSSALRRIMISELPTYAIENVFFYENTSSMYDEVLAHRLGMVPI--------------- 65
Query: 158 SNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSS 217
+G P V ++EL E P Y+S +
Sbjct: 66 ----------------KGKP---VSSDELITFVVSKEGPC------------TVYSSDLN 94
Query: 218 SQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 277
S+ F N P + +L GQ++E E A+ G GK H+KW P + +
Sbjct: 95 SEVGESAFDNVP--------LVKLAEGQKLEAECEALVGTGKIHSKWQPCNVVYKELGDN 146
Query: 278 IV--LLEDVEDEDAEKLVKT 295
+V +E ++ +AE L+++
Sbjct: 147 LVEFKIESHKNMEAEDLIRS 166
>gi|443917515|gb|ELU38215.1| DNA-directed RNA polymerase II polypeptide [Rhizoctonia solani AG-1
IA]
Length = 381
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 25/201 (12%)
Query: 83 LTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPI 142
+ K + F L G++ A AN+ RR+ +A+LPT+AI+ V I +NT+V+ DE LAHRLG++P+
Sbjct: 16 IKKQSVNFVLEGVELAFANSLRRVCMADLPTIAIDLVEIESNTTVLPDEFLAHRLGMVPL 75
Query: 143 IVDPRLFEYMSENDTSNEKNTIVFK-------LHVLCERGGPRLTVKTNELKWLPNGSEL 195
+ + +E T + + L++ + + +N L +P+G
Sbjct: 76 V-----------STNCDEDCTCISRCKYCSVELYLNVSSTNQPVDITSNNLDVVPSGGGE 124
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
+ +F + P ++P P + + R+ GQE+ L A K
Sbjct: 125 FGGEDEGEEGDELQKRPPNFGT-----PIGKDDPNVP--PVLLCRIRKGQELRLRCIAKK 177
Query: 256 GIGKTHAKWSPVATAWYRMLP 276
G K HAKWSP + P
Sbjct: 178 GTAKEHAKWSPCTGVGFEYDP 198
>gi|448409409|ref|ZP_21574707.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
gi|445673012|gb|ELZ25579.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
Length = 255
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 123/310 (39%), Gaps = 74/310 (23%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
++ VE + + F + GI A AN RR ++A++PT +I+++ + N+SV+ DE +
Sbjct: 3 DYEVEFVERGDREARFLVRGITPAFANGIRRAMVADVPTFSIDELRVVENSSVMFDEQIG 62
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
RLGL+P+ FE E + L V
Sbjct: 63 LRLGLVPLTTPEGEFEIGDE---------VTLALDV------------------------ 89
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHA 253
PS + T T + S D++ S+ +RP D I I L GQ +E EA A
Sbjct: 90 --------EGPSREETTETVTAYSGDIVS--SDEMVRPANDNIPIIDLKAGQRLEAEADA 139
Query: 254 VKGIGKTHAKWSPVATAWYRMLPEIVLLED---VEDEDAEKLVKTCPVNVFDIEDIGSGK 310
V G+ HAK YR L + ++ D DE+ L
Sbjct: 140 VLDRGRDHAKHQGGVAVGYRHLQRVEVVGDKGEFADEEPHIL------------------ 181
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKR-----VSIRRVKDHFIFTIESTGALSPETLFTE 365
R V + E G + +R + + V + F+F +E+ G+L+ + L T
Sbjct: 182 -RGVVEEDGELVHTDE---FGNDLTQRYPGKEIEVEDVPNAFVFHVETDGSLTVDELVTR 237
Query: 366 AVKILEDKCE 375
AV L D+ +
Sbjct: 238 AVGSLRDRAD 247
>gi|358378283|gb|EHK15965.1| hypothetical protein TRIVIDRAFT_195864 [Trichoderma virens Gv29-8]
Length = 338
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 131/303 (43%), Gaps = 66/303 (21%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F+L + ANA RRI+ AE+PT+AI+ V I N+SV+ DE +AHRLGLIP+
Sbjct: 30 VDFELSRTNLPFANALRRIIQAEVPTIAIDLVEIEVNSSVLADEFIAHRLGLIPL----- 84
Query: 148 LFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSS 207
S N + + CE+ + +V L L K S+
Sbjct: 85 ---------DSKGVNELNYSRDCDCEQYCEQCSVS------------LTLHAKCTSDEIM 123
Query: 208 KPRTYTSFSSSQDLLPE--FSNNPIRPM------LDITIARLGPGQEIELEAHAVKGIGK 259
K ++DL+ + +N+ P+ L IA+L QE+++ A KGI K
Sbjct: 124 K-------VYARDLVADGRHANSVGTPIITDPEGLGCLIAKLRKDQELKITCIAKKGIAK 176
Query: 260 THAKWSPVATAWYRMLPEIVLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQP 318
HAKW P + + P L D+ E+ K P ++ AQ
Sbjct: 177 EHAKWMPTSAVGFEYDPHNKLHHLDMWFENNTDPEKEWP--------------KSKYAQ- 221
Query: 319 RACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVI 378
E L+ GE ++ V + F F +E++G + P+ + +++L+ K ++
Sbjct: 222 -----WEEPLQEGEPFDYDA----VPNRFYFEVEASGTMEPDLIIQGGIRVLQQKIGGLL 272
Query: 379 TEL 381
L
Sbjct: 273 KGL 275
>gi|448298705|ref|ZP_21488732.1| DNA-directed RNA polymerase subunit D [Natronorubrum tibetense
GA33]
gi|445591007|gb|ELY45218.1| DNA-directed RNA polymerase subunit D [Natronorubrum tibetense
GA33]
Length = 249
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 124/301 (41%), Gaps = 67/301 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + D F + + A AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDRDARFLVRDVTPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E++ E +T+ + V GP T + +L
Sbjct: 65 RLGLVPLTTPPE-GEFV-------EDDTVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS DL+ +N + I L GQ +E EA AV
Sbjct: 103 --------------------VSSDDLVQPADDN-------VPIIELKDGQRLEAEADAVL 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
GK HAK YR L + +++D+ +E ++V+ IED G +
Sbjct: 136 ERGKNHAKHQGGVAVGYRHLQRVSVVDDLPEFEEQESQIVRGV------IEDDGELVPTS 189
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
+ K+V + V + F+F +E+ G+ + E L T AV +E +
Sbjct: 190 EFDHDLSNRYPG----------KQVEVEDVPNAFVFRVETDGSFTVEELVTRAVDSIEAR 239
Query: 374 C 374
Sbjct: 240 A 240
>gi|409722495|ref|ZP_11269943.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
gi|448724486|ref|ZP_21706993.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
gi|445785803|gb|EMA36589.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
Length = 249
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 123/305 (40%), Gaps = 70/305 (22%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
++ VE I + + + F + GI A AN RR ++A++PT++I+ V + N+SV+ DE
Sbjct: 3 TTDYEVEFIDVDEREARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVIENSSVMFDEQ 62
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ HRLG++P+ P FE ++ L V
Sbjct: 63 IGHRLGMVPLSAPPDEFEV---------GESVTLALDV---------------------- 91
Query: 193 SELPLETKPDSNPSSKPRT-YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
S P T Y+ S D + E + + P++D L Q +E+EA
Sbjct: 92 --------------SGPETAYSGDLQSADSMVEPAEQNV-PIID-----LKEDQRLEVEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFD--IEDIGSG 309
AV GKTHAK YR L + + DA++ P N+ IED G
Sbjct: 132 EAVLDSGKTHAKHQGGVAVGYRHLQHVEVA-----GDADEFADEEP-NILRGVIEDDG-- 183
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ L K + + V + F+F +E+ G++S E L AV
Sbjct: 184 --ELVPTEEFGSDLTNRY------PGKELDVTDVPNAFVFHVETDGSMSVEELVLAAVDS 235
Query: 370 LEDKC 374
L D+
Sbjct: 236 LGDRA 240
>gi|408391899|gb|EKJ71265.1| hypothetical protein FPSE_08504 [Fusarium pseudograminearum CS3096]
Length = 340
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 129/301 (42%), Gaps = 62/301 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F+L + + ANA RR++ AE+PT+AI+ V I N+SV+ DE +AHRLGLIP+ D +
Sbjct: 30 VDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAHRLGLIPL--DSK 87
Query: 148 L---FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
Y + D E+ ++ LH C +K + +G
Sbjct: 88 GVAELNYSRDCDCEQYCEQCSVTLTLHAKCTS---DEIMKVYARDLVVDG---------- 134
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
R S S + PE IA+L QE+++ A KGI K HA
Sbjct: 135 -------RHGNSVGSPMIMDPEGYG--------CLIAKLRKHQELKISCIAKKGIAKEHA 179
Query: 263 KWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
KW P + + P L ++ + D + V+ ++ AQ
Sbjct: 180 KWMPTSAVGFEYDPHNKLNHIDWWFENDTDPAVEW---------------PKSKYAQ--- 221
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
+ + GE ++ V + F F +ES+G++ P+ + E +++L+ K ++
Sbjct: 222 ---WEDAPQEGEPFDYDA----VPNRFYFEVESSGSMEPDQIVREGIRVLQQKIGGLLKG 274
Query: 381 L 381
L
Sbjct: 275 L 275
>gi|46109130|ref|XP_381623.1| hypothetical protein FG01447.1 [Gibberella zeae PH-1]
Length = 337
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 129/301 (42%), Gaps = 62/301 (20%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPR 147
++F+L + + ANA RR++ AE+PT+AI+ V I N+SV+ DE +AHRLGLIP+ D +
Sbjct: 27 VDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAHRLGLIPL--DSK 84
Query: 148 L---FEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
Y + D E+ ++ LH C + V +L + +G
Sbjct: 85 GVAELNYSRDCDCEQYCEQCSVTLTLHAKC-TSDEIMKVYARDL--VVDG---------- 131
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
R S S + PE IA+L QE+++ A KGI K HA
Sbjct: 132 -------RHGNSVGSPMIMDPEGYG--------CLIAKLRKHQELKISCIAKKGIAKEHA 176
Query: 263 KWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA 320
KW P + + P L ++ + D + V+ ED P+
Sbjct: 177 KWMPTSAVGFEYDPHNKLNHIDWWFENDTDPAVEWPKSKYAQWEDA-----------PQE 225
Query: 321 CTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITE 380
GE ++ V + F F +ES+G++ P+ + E +++L+ K ++
Sbjct: 226 ----------GEPFDYDA----VPNRFYFEVESSGSMEPDQIVREGIRVLQQKIGGLLKG 271
Query: 381 L 381
L
Sbjct: 272 L 272
>gi|313126017|ref|YP_004036287.1| DNA-directed RNA polymerase subunit d [Halogeometricum borinquense
DSM 11551]
gi|448285857|ref|ZP_21477096.1| DNA-directed RNA polymerase subunit D [Halogeometricum borinquense
DSM 11551]
gi|312292382|gb|ADQ66842.1| DNA-directed RNA polymerase, subunit D [Halogeometricum borinquense
DSM 11551]
gi|445575887|gb|ELY30350.1| DNA-directed RNA polymerase subunit D [Halogeometricum borinquense
DSM 11551]
Length = 260
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 125/318 (39%), Gaps = 82/318 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+F VE I F + G+ A+AN RR +IA++PT +I+ V N+SV+ DE
Sbjct: 1 MAEDFEVEFIERDDRKARFLVRGMTPAVANGIRRAMIADVPTFSIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
++ RLGL+P+ FE + +T+ L V GP
Sbjct: 61 MIGLRLGLVPLTTPLDDFE---------QGDTVTLALDVE----GP-------------- 93
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELE 250
T++S E S+ ++P D + I L GQ +ELE
Sbjct: 94 --------------------ATAYSGD----IETSDELVKPAEDNVPIIELKQGQRLELE 129
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGK 310
A AV G GK+HAK YR L + ++ DA + + P N+
Sbjct: 130 ADAVLGDGKSHAKHQGGVAVGYRHLHRVEVV-----GDANEFEEQEP-NIL--------- 174
Query: 311 KRATVAQPRACTLCRECLRCGE-----EWE---------KRVSIRRVKDHFIFTIESTGA 356
R + + A E GE E++ K V + V F+F +E+ G+
Sbjct: 175 -RGVIEEQAAEHAADESAEDGELVPTSEFDNDLTKRYPGKEVEVHDVPGAFVFHVETDGS 233
Query: 357 LSPETLFTEAVKILEDKC 374
+ L AV+ + D+
Sbjct: 234 FTVPELVRRAVESISDRA 251
>gi|329766306|ref|ZP_08257853.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137208|gb|EGG41497.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 212
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L G+ ANA RRI + +P AI+ V I N+SV+ DE LAHRL
Sbjct: 4 LEVINKDNQKISIKLKGVPLQYANALRRICLNGIPVFAIDTVDIIENSSVLPDEGLAHRL 63
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ D +E K+ ++ + G + T+ +NEL
Sbjct: 64 GLIPLQTDLSRFNEPSKCDCKSETGCSNCKVMLVLDSGDSDVTRTILSNEL--------- 114
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
+S+D ++P D I I +L GQ I++E +A
Sbjct: 115 ---------------------TSED-------ESVKPTSDKIPIVQLAAGQRIKVECYAR 146
Query: 255 KGIGKTHAKWS 265
G G HAKW+
Sbjct: 147 LGRGTEHAKWN 157
>gi|322710646|gb|EFZ02220.1| RNA polymerase II subunit 3 [Metarhizium anisopliae ARSEF 23]
Length = 362
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 128/316 (40%), Gaps = 68/316 (21%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+R E I ++F L + + AN+ RRI+ AE+PT+AI+ V + NTSV+ DE +AH
Sbjct: 26 WRPEFIAADSTRVDFALSRTNLSFANSIRRIIQAEVPTIAIDLVEVEVNTSVLADEFIAH 85
Query: 136 RLGLIPIIVDP-RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
RLGLIP+ Y + D E+ ++ LH C ++E+ +
Sbjct: 86 RLGLIPLNAKGVNELNYSRDCDCEQYCEQCSVTLTLHARC---------TSDEIMKV--- 133
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
++ +SQ P N+P + IA+L QE++L
Sbjct: 134 -------------YARDLIVDGRHASQVGTPVI-NDP--EGMGCLIAKLRKDQELKLTCI 177
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
A KGI K HAKW P + + P L D+ E+ K P + +
Sbjct: 178 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDLWYENNTDPQKEWPKSKY---------- 227
Query: 312 RATVAQPRACTLCRECLRCGEEWE------KRVSIRRVKDHFIFTIESTGALSPETLFTE 365
EWE + + V D F F +E++G++ P+ +
Sbjct: 228 --------------------AEWEDPPQDGEPFNYDAVPDRFYFEVETSGSMEPDQIVQG 267
Query: 366 AVKILEDKCERVITEL 381
++ L+ K ++ L
Sbjct: 268 GIRALQQKIGALLKGL 283
>gi|393796020|ref|ZP_10379384.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia BG20]
Length = 212
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EVI + L G+ ANA RRI + +P AI+ V I N+SV+ DE LAHRL
Sbjct: 4 LEVINKDNQKISIKLKGVPLQYANALRRICLNGIPVFAIDTVDIIENSSVLPDEGLAHRL 63
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRL--TVKTNELKWLPNGSEL 195
GLIP+ D F S+ D +E K+ ++ + G + T+ +NEL
Sbjct: 64 GLIPLQTDLSRFNEPSKCDCKSETGCSNCKVMLVLDSGDSDVTRTILSNEL--------- 114
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
+S+D ++P D I I +L GQ I++E +A
Sbjct: 115 ---------------------TSED-------ESVKPTSDKIPIVQLAAGQRIKVECYAR 146
Query: 255 KGIGKTHAKWS 265
G G HAKW+
Sbjct: 147 LGRGTEHAKWN 157
>gi|452207493|ref|YP_007487615.1| DNA-directed RNA polymerase subunit D [Natronomonas moolapensis
8.8.11]
gi|452083593|emb|CCQ36905.1| DNA-directed RNA polymerase subunit D [Natronomonas moolapensis
8.8.11]
Length = 247
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 127/308 (41%), Gaps = 69/308 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ V I + F + GI A AN RR ++A++PT++++ V + N+SV+ DE
Sbjct: 1 MSGQYDVTFIERDERSARFLVRGISPAFANGIRRAMVADVPTLSVDTVRVIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+A RLGLIP ++ D + T+ + V GP T + +L
Sbjct: 61 QIALRLGLIP----------LTTPDDYEPEETVTLAIDV----EGP-ATAYSGDL----- 100
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS + P N P I L GQ +ELEA
Sbjct: 101 -----------------------VSSDGQVQPAEENVP--------IIDLKEGQRLELEA 129
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEKLVKTCPVNVFDIEDIGSG 309
A G GK HAK YR L + L +D ++ ED ++++ IED G
Sbjct: 130 DAELGYGKDHAKHQGGVAVGYRHLQRVALGDDRDEFAEDDPEIIRGV------IEDDGEL 183
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ A+ + ++ VS+ V + F+F +E+ G+++ + L +AV+
Sbjct: 184 VETASFDNDLSDRYP----------DREVSVEDVPNAFVFDVETDGSMTVDELVLKAVES 233
Query: 370 LEDKCERV 377
L + + +
Sbjct: 234 LRTRADEL 241
>gi|336121979|ref|YP_004576754.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
gi|334856500|gb|AEH06976.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
Length = 197
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 60/223 (26%)
Query: 74 NNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVL 133
NN + E R+ + ++F+L + ++A RRI+I+E PT AIE V NTS + DE++
Sbjct: 3 NNIQKEKTRIG-ERLKFNLKA-PLSFSSALRRIMISETPTYAIENVYFYENTSSMYDELI 60
Query: 134 AHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
AHRLGLIPI P SN++ I+F L + GP V + +L+
Sbjct: 61 AHRLGLIPIKGKP----------VSNDE-VIIFALI----KEGP-CVVYSGDLE------ 98
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
S + +++ F + PI +L GQ++ELE A
Sbjct: 99 ----------------------SETGEVV--FKHIPI--------VKLKEGQKLELECEA 126
Query: 254 VKGIGKTHAKWSPVATAWYRML--PEI-VLLEDVEDEDAEKLV 293
+ G GKTHAKW P A Y++L E+ L+E + D+E L+
Sbjct: 127 LVGTGKTHAKWQP-CNAVYKLLNNDEVEFLVESYGNMDSEDLL 168
>gi|422293779|gb|EKU21079.1| DNA-directed RNA polymerase II subunit RPB3, partial
[Nannochloropsis gaditana CCMP526]
Length = 121
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
++E++ L D ++F L DA++ANA RR++IAE+PT+AI+ V N+SV+ DE LAHR
Sbjct: 8 KLEILELKDDFIKFILSDTDASVANALRRVMIAEVPTLAIDLVSFEVNSSVLNDEYLAHR 67
Query: 137 LGLIPI-IVDPR 147
LGLIP+ V+PR
Sbjct: 68 LGLIPLRSVNPR 79
>gi|330040504|ref|XP_003239937.1| DNA-directed RNA polymerase II [Cryptomonas paramecium]
gi|327206863|gb|AEA39039.1| DNA-directed RNA polymerase II [Cryptomonas paramecium]
Length = 301
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 39/289 (13%)
Query: 101 NAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNE 160
N+ RR ++ ++PT++++ V I N+S++ DE +AHRL L+P+ D+ N
Sbjct: 24 NSLRRTIMGDMPTLSVDLVYIEKNSSLLHDEFIAHRLSLLPL-------------DSQNI 70
Query: 161 KNTIVFKLHVLCE-RGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQ 219
KN + CE +L + EL + N + + + SS+ S
Sbjct: 71 KN---LNYSMDCECNSYCQLCSRVFELNIIANENLKHVFSTHLLEVSSQKY-------SL 120
Query: 220 DLLPEFSNNPIRPM---LDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVAT----AWY 272
+ P N ++ + +I I +L GQ I+L A KG GK HAKW+PV+ A Y
Sbjct: 121 ERKPNLLNQHLKKINFDSEIIITKLTKGQSIKLICVAKKGTGKMHAKWNPVSNIRFKAEY 180
Query: 273 RMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGS--------GKKRATVAQPRACTLC 324
M + L + ++ ++ + N+F +++ K R + + A +L
Sbjct: 181 SMKINLKNLNILLKKNLKQKISKDFDNLFVYDNLNDRIKFSNIYFKNRFFLLEQMAGSLI 240
Query: 325 RECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
LR + + + F ++ESTG L+ + + EA+ +++ K
Sbjct: 241 NFFLRETLNPLDFLMLDKNTKTFYISLESTGTLNCKFILKEAISLIKQK 289
>gi|345328382|ref|XP_001511558.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ornithorhynchus anatinus]
Length = 234
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 113/277 (40%), Gaps = 61/277 (22%)
Query: 111 LPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVF 166
LPT I+ V I N+SV+ DE +AHRLGLIP+ D + + D + E+ ++ F
Sbjct: 3 LPT--IDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEF 60
Query: 167 KLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFS 226
L V C R + + S+ PR S S+D P
Sbjct: 61 TLDVRCNEDQTRHVTSRDLI-------------------SNSPRVIPVTSRSRDNDP--- 98
Query: 227 NNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED 286
N DI I +L GQE+ L A+A KG GK H KW+P A + P+ L V
Sbjct: 99 -NDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHTKWNPTAGVAFEYDPDNALRHTVYP 157
Query: 287 EDAEKLVKTCPVNVF-DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKD 345
+ E P + + +I++ + +P +
Sbjct: 158 KPEE-----WPKSEYSEIDEDEAQAPYDPNGKP--------------------------E 186
Query: 346 HFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
F + +ES G+L PET+ A+ L+ K + T+LS
Sbjct: 187 RFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLS 223
>gi|448727623|ref|ZP_21709972.1| DNA-directed RNA polymerase subunit D [Halococcus morrhuae DSM
1307]
gi|445789609|gb|EMA40288.1| DNA-directed RNA polymerase subunit D [Halococcus morrhuae DSM
1307]
Length = 248
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 129/323 (39%), Gaps = 92/323 (28%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + GI A AN RR ++A++PT++I+ V + N+SV+ DE
Sbjct: 1 MSTEYDVEFVDHDERAARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ HRLG++P+ P FE M E ++ L V
Sbjct: 61 QIGHRLGMVPLATPPDEFE-MGE--------SVTLGLDV--------------------- 90
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
+ PD+ S ++ S + P N PI + D Q +E+EA
Sbjct: 91 -------SGPDTAYSGDLQSMDSM-----VEPAEQNVPIIELKD--------DQRLEVEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE---DEDAEKLVKTCPVNVFDIEDIGS 308
AV GK+HAK YR L + ++ D E DE+ L IED G
Sbjct: 131 DAVLDTGKSHAKHQGAVAVGYRHLQTVDVVGDREEFADEEPNILRGV-------IEDDGE 183
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWE---------KRVSIRRVKDHFIFTIESTGALSP 359
L EE++ K + ++ V + F+F +E+ G++S
Sbjct: 184 -------------------LIPTEEFDNDLTERYPGKELDVQDVPNAFVFDVETDGSMSV 224
Query: 360 ETLFTEAVKILEDKCERVITELS 382
E L AV L+ + TELS
Sbjct: 225 EELVLAAVDSLDARA----TELS 243
>gi|448739234|ref|ZP_21721249.1| DNA-directed RNA polymerase subunit D [Halococcus thailandensis JCM
13552]
gi|445799829|gb|EMA50198.1| DNA-directed RNA polymerase subunit D [Halococcus thailandensis JCM
13552]
Length = 248
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 129/323 (39%), Gaps = 92/323 (28%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + GI A AN RR +IA++PT++I+ V + N+SV+ DE
Sbjct: 1 MSTEYDVEFVDRDERAARFLVRGITPAFANGIRRAMIADVPTLSIDTVRVVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ HRLG++P+ P FE M E ++ L V
Sbjct: 61 QIGHRLGMVPLAAPPDEFE-MGE--------SVTLGLDV--------------------- 90
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
+ PD+ S ++ S + P N PI + D Q +E+EA
Sbjct: 91 -------SGPDTAYSGDLQSMDSM-----VEPAEQNVPIIELKD--------DQRLEIEA 130
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE---DEDAEKLVKTCPVNVFDIEDIGS 308
AV GK+HAK YR L + ++ D E DE+ L IED G
Sbjct: 131 DAVLDTGKSHAKHQGGVAVGYRHLQTVDVVGDREEFADEEPNILRGV-------IEDDGE 183
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWE---------KRVSIRRVKDHFIFTIESTGALSP 359
L EE++ K + ++ V + F+F +E+ G++S
Sbjct: 184 -------------------LIPTEEFDNDLTERYPGKELDVQDVPNAFVFDVETDGSMSV 224
Query: 360 ETLFTEAVKILEDKCERVITELS 382
E L AV L+ + TELS
Sbjct: 225 EELVLAAVDSLDARA----TELS 243
>gi|448712003|ref|ZP_21701546.1| DNA-directed RNA polymerase subunit D [Halobiforma nitratireducens
JCM 10879]
gi|445791088|gb|EMA41737.1| DNA-directed RNA polymerase subunit D [Halobiforma nitratireducens
JCM 10879]
Length = 249
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 118/285 (41%), Gaps = 71/285 (24%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
GI AN RR +IA++PTMAI+ V N+SV+ DE LA RLGL+P+ P
Sbjct: 23 GISPGFANGIRRAMIADVPTMAIDTVRFIENSSVMFDEQLALRLGLVPLTTPPE------ 76
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
D E +T+ + V GP T + +L
Sbjct: 77 --DEFVEDDTVTLSIDV----EGP-ATAYSGDL--------------------------- 102
Query: 214 SFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 272
S +DL+ P N PI + D Q +E EA AV GK HAK Y
Sbjct: 103 --VSEEDLVQPADENVPIIELKD--------DQRLEAEADAVLDYGKDHAKHQGGVAVGY 152
Query: 273 RMLPEIVLLEDV---EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLR 329
R L + +++D+ EDE++ ++++ IED G + +
Sbjct: 153 RHLQRVEVVDDLPEFEDEES-QIIRGV------IEDDGELVPTSEFDHDLSNRYPG---- 201
Query: 330 CGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
K+V + V + F+F +E+ G+LS E L T A +E +
Sbjct: 202 ------KQVEVEDVPNAFVFHVETDGSLSVEELVTRAADSIEARA 240
>gi|389848214|ref|YP_006350453.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|448618422|ref|ZP_21666659.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|388245520|gb|AFK20466.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|445746793|gb|ELZ98251.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
Length = 260
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 126/309 (40%), Gaps = 66/309 (21%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F VE I F + G+ A+AN RR ++A++PT +I+ V NTSV+ DE+
Sbjct: 2 ANDFEVEFIEREDRRARFVVNGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE DT + V E GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDEFE---PGDT----------VTVALEVDGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ + ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADEMVVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGK 310
AV G GK HAK YR L + ++ D +E +++ IE+ +
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFEEQEPNILRGV------IEEAAAEH 185
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDH-----FIFTIESTGALSPETLFTE 365
A+ + E G + KR + V+ H F+F++E+ G+ + + L
Sbjct: 186 ADDEDAEDGDLVVTDE---FGNDLTKRYPGKEVEVHDVPGAFVFSVETDGSFTVDELVKR 242
Query: 366 AVKILEDKC 374
+V L D+
Sbjct: 243 SVASLGDRA 251
>gi|257388632|ref|YP_003178405.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
gi|257170939|gb|ACV48698.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
Length = 259
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 126/308 (40%), Gaps = 61/308 (19%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
++ VE + + + F + GI A AN RR +IA++PT +++ V + N+SV+ DE
Sbjct: 1 MTQDYEVEFVERSDREARFLVRGISPAFANGIRRAMIADVPTFSVDTVRVIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
+ RLGL+P+ D FE
Sbjct: 61 QIGLRLGLVPLTTDLDDFEV---------------------------------------- 80
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELE 250
G E+ L S S P T + S DL+ S++ + P D I I L GQ +E+E
Sbjct: 81 GDEVTL-----SIDVSGPET----AYSGDLVS--SDSLVGPADDNIPIIDLKDGQRLEVE 129
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED---VEDEDAEKLVKTCPVNVFDIEDIG 307
A AV G+ HAK YR L + ++ D ED++ L + D
Sbjct: 130 ADAVLDRGREHAKHQGGVAVGYRHLQRVEVVGDKGEFEDDETHILRGVIEEQAAEHVDGD 189
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + + L + G+E E + V++ F+F +E+ G+LS E L AV
Sbjct: 190 ADDGDLVLTEEFDSDLTKRY--PGKELE----VHDVENAFVFHVETDGSLSVEELTLRAV 243
Query: 368 KILEDKCE 375
+ + +
Sbjct: 244 DSIRSRAD 251
>gi|448583259|ref|ZP_21646615.1| DNA-directed RNA polymerase subunit D [Haloferax gibbonsii ATCC
33959]
gi|445729488|gb|ELZ81083.1| DNA-directed RNA polymerase subunit D [Haloferax gibbonsii ATCC
33959]
Length = 259
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 118/304 (38%), Gaps = 57/304 (18%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F+VE I F G+ A+AN RR ++A++PT +IE V NTSV+ DE+
Sbjct: 2 VNDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIETVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE +T+ L V GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDDFE---------PGDTVTVALEV----DGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMVVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGK 310
AV G GK HAK YR L + ++ D DE +++ G +
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAE 191
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
VA E K V + V F+F++E+ G+ + L T AV L
Sbjct: 192 DGDLVATETFGNDLTERYPG-----KEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASL 246
Query: 371 EDKC 374
D+
Sbjct: 247 GDRA 250
>gi|25012925|gb|AAN71549.1| RH25219p [Drosophila melanogaster]
Length = 117
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVD 145
LAHR+GLIP+I D
Sbjct: 63 FLAHRIGLIPLISD 76
>gi|399576713|ref|ZP_10770468.1| DNA-directed RNA polymerase, subunit d [Halogranum salarium B-1]
gi|399238157|gb|EJN59086.1| DNA-directed RNA polymerase, subunit d [Halogranum salarium B-1]
Length = 249
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 117/299 (39%), Gaps = 65/299 (21%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
++F VE I F + G+ AIAN RR +IA++PT++I+ V N+SV+ DE+
Sbjct: 2 AHDFDVEFIERGDRKARFLVRGLTPAIANGIRRAMIADVPTLSIDSVRFVENSSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+A RLGL+P+ T L G
Sbjct: 62 IALRLGLVPL----------------------------------------TTSLDDFEEG 81
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
E+ L D + + SS + + P N P I L GQ +E EA
Sbjct: 82 DEVTLAL--DVEGPATAYSGDMVSSVEYVQPADENIP--------IIELKEGQHLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLVKTCPVNVFDIEDIGSGKK 311
AV GK+HAK YR L ++ ++ D E +D E + + D E I + +
Sbjct: 132 AVLDSGKSHAKHQGGVAVGYRHLQKVEVVGDTPEFDDGEPNILRGVIETEDGELIHTEEF 191
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
+ Q K V + V F+F +E+ G+ + E L AV+ L
Sbjct: 192 GNDLTQQFPG--------------KEVEVSDVPGAFVFHVETDGSFTVEELVLRAVESL 236
>gi|194860382|ref|XP_001969570.1| GG23887 [Drosophila erecta]
gi|190661437|gb|EDV58629.1| GG23887 [Drosophila erecta]
Length = 117
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNT 163
LAHR+GLIP+I D + D NT
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDLQRGANT 94
>gi|448474335|ref|ZP_21602194.1| DNA-directed RNA polymerase subunit D [Halorubrum aidingense JCM
13560]
gi|445817642|gb|EMA67511.1| DNA-directed RNA polymerase subunit D [Halorubrum aidingense JCM
13560]
Length = 250
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 120/294 (40%), Gaps = 73/294 (24%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A AN RR +IA++PT +I+ V N+SV+ DE++ RLGLIP+
Sbjct: 24 GLTPAFANGIRRAMIADVPTFSIDTVNFVENSSVMFDEMIGLRLGLIPL----------- 72
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
T L G E+ L + P++ Y+
Sbjct: 73 -----------------------------TTPLDDFEIGDEVTLALDVE-GPAT---AYS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L E +++ ++ I L GQ +E EA AV GK HAK + YR
Sbjct: 100 GDIESADPLVEVADD------NVPIIELKEGQRLEFEATAVLDSGKEHAKHQGGVSVGYR 153
Query: 274 MLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECL--R 329
L + + D+ DED +++ R + P + +
Sbjct: 154 HLQRVTVEGDLGEFDEDEPRIL------------------RGVIETPEGEIVLTDEFDND 195
Query: 330 CGEEW-EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
E++ K VS+ V F+F IE+ G+ S E L A+ +E++ + + T+++
Sbjct: 196 LSEKFPGKEVSVEDVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQTKVA 249
>gi|221040824|dbj|BAH12113.1| unnamed protein product [Homo sapiens]
Length = 155
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPR 178
+AHRLGLIP+I D + + D + E + ++ F L V C R
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTFEEFCPECSVEFTLDVRCNEDQTR 113
>gi|448565309|ref|ZP_21636176.1| DNA-directed RNA polymerase subunit D [Haloferax prahovense DSM
18310]
gi|445715053|gb|ELZ66809.1| DNA-directed RNA polymerase subunit D [Haloferax prahovense DSM
18310]
Length = 259
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 118/304 (38%), Gaps = 57/304 (18%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F+VE I F G+ A+AN RR ++A++PT +I+ V NTSV+ DE+
Sbjct: 2 VNDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE +T+ L V GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLGDFE---------PGDTVTVALEV----DGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMVVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGK 310
AV G GK HAK YR L + ++ D DE +++ G +
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAE 191
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
VA E K V + V F+F++E+ G+ + L T AV L
Sbjct: 192 DGDLVATETFGNDLTERYPG-----KEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASL 246
Query: 371 EDKC 374
D+
Sbjct: 247 GDRA 250
>gi|433418975|ref|ZP_20405134.1| DNA-directed RNA polymerase subunit D [Haloferax sp. BAB2207]
gi|448546358|ref|ZP_21626522.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-646]
gi|448548345|ref|ZP_21627612.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-645]
gi|448557539|ref|ZP_21632728.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-644]
gi|448568220|ref|ZP_21637797.1| DNA-directed RNA polymerase subunit D [Haloferax lucentense DSM
14919]
gi|448600839|ref|ZP_21656218.1| DNA-directed RNA polymerase subunit D [Haloferax alexandrinus JCM
10717]
gi|448602318|ref|ZP_21656374.1| DNA-directed RNA polymerase subunit D [Haloferax sulfurifontis ATCC
BAA-897]
gi|448622863|ref|ZP_21669512.1| DNA-directed RNA polymerase subunit D [Haloferax denitrificans ATCC
35960]
gi|432199583|gb|ELK55744.1| DNA-directed RNA polymerase subunit D [Haloferax sp. BAB2207]
gi|445702811|gb|ELZ54751.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-646]
gi|445714096|gb|ELZ65863.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-644]
gi|445714440|gb|ELZ66202.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-645]
gi|445727170|gb|ELZ78784.1| DNA-directed RNA polymerase subunit D [Haloferax lucentense DSM
14919]
gi|445734852|gb|ELZ86408.1| DNA-directed RNA polymerase subunit D [Haloferax alexandrinus JCM
10717]
gi|445747833|gb|ELZ99287.1| DNA-directed RNA polymerase subunit D [Haloferax sulfurifontis ATCC
BAA-897]
gi|445753371|gb|EMA04788.1| DNA-directed RNA polymerase subunit D [Haloferax denitrificans ATCC
35960]
Length = 259
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 118/304 (38%), Gaps = 57/304 (18%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F+VE I F G+ A+AN RR ++A++PT +I+ V NTSV+ DE+
Sbjct: 2 VNDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE +T+ L V GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDDFE---------PGDTVTVALEV----DGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMVVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGK 310
AV G GK HAK YR L + ++ D DE +++ G +
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAE 191
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
VA E K V + V F+F++E+ G+ + L T AV L
Sbjct: 192 DGDLVATETFGNDLTERYPG-----KEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASL 246
Query: 371 EDKC 374
D+
Sbjct: 247 GDRA 250
>gi|322701809|gb|EFY93557.1| RNA polymerase II subunit 3 [Metarhizium acridum CQMa 102]
Length = 362
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 68/304 (22%)
Query: 88 MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDP- 146
++F L + + AN+ RRI+ AE+PT+AI+ V + NTSV+ DE +AHRLGLIP+
Sbjct: 38 VDFALSRTNLSFANSIRRIIQAEVPTIAIDLVEVEVNTSVLADEFIAHRLGLIPLNAKGV 97
Query: 147 RLFEYMSENDTSN--EKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSN 204
Y + D E+ ++ LH C ++E+ + +L ++ +
Sbjct: 98 NELNYSRDCDCEQYCEQCSVTLTLHARC---------TSDEIMKV-YARDLIVDGR---- 143
Query: 205 PSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKW 264
+SQ P N+P + IA+L QE++L A KGI K HAKW
Sbjct: 144 -----------HASQVGTPVI-NDP--EGMGCLIAKLRKDQELKLTCIAKKGIAKEHAKW 189
Query: 265 SPVATAWYRMLPEIVLLE-DVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTL 323
P + + P L D+ E+ K P + +
Sbjct: 190 MPTSAVGFEYDPHNKLHHLDLWYENNTDPQKEWPKSKY---------------------- 227
Query: 324 CRECLRCGEEWE------KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERV 377
EWE + + V D F F +E++G++ P+ + ++ L+ K +
Sbjct: 228 --------AEWEDPPQDGEPFNYDAVPDRFYFEVETSGSMEPDQIVQGGIRALQQKIGAL 279
Query: 378 ITEL 381
+ L
Sbjct: 280 LKGL 283
>gi|299751420|ref|XP_001830255.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
gi|298409367|gb|EAU91402.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
Length = 360
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
V V + KD + F L +D A R+++A++PT+AI+ V NTSV+ DE +AHRL
Sbjct: 10 VRVREVKKDKVNFVLENVDLA------RVVMADIPTVAIDLVEFEANTSVLPDEYIAHRL 63
Query: 138 GLIPIIVD--PRLFEYMSENDTSNEKN--TIVFKLHVLCERGGPRLTVKTNELKWLPNGS 193
G IP+I Y + ++ + + +L V C + V +N L+ +P
Sbjct: 64 GQIPLISTNCDEAIRYTRDCTCLSQCSYCAVQLRLDVAC-NDDTTMEVTSNHLEVVPLDD 122
Query: 194 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHA 253
+ E + + + + + P N P P + I ++ GQE+ ++ A
Sbjct: 123 YMQEEIQHGEEKAKRTQWFGH--------PVGKNEPGTP--PVLICKIRKGQELRVKCIA 172
Query: 254 VKGIGKTHAKWSPVATAWYRMLP 276
KGI K HAKWSP + + P
Sbjct: 173 KKGIAKEHAKWSPCSAVSFEYDP 195
>gi|300707120|ref|XP_002995782.1| hypothetical protein NCER_101243 [Nosema ceranae BRL01]
gi|239604995|gb|EEQ82111.1| hypothetical protein NCER_101243 [Nosema ceranae BRL01]
Length = 233
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 40/190 (21%)
Query: 84 TKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 143
T + ++F L + ANA RRILI+E+PT+ I+ V I N + + DE+++HRLGL+P+
Sbjct: 9 TDNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHRLGLVPLY 68
Query: 144 VDPRL-FEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD 202
L F D +K ++ L+V N +++P+
Sbjct: 69 TKKDLVFRDDCACDDICDKCSVSLTLNV-------------------SNNTDMPMVV--- 106
Query: 203 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHA 262
T S D++ ++P+ I +LG Q +++ A KG+GK H+
Sbjct: 107 --------TCKDLKSQDDVV--IRSSPV-------ICKLGTRQNLKVICKAFKGVGKIHS 149
Query: 263 KWSPVATAWY 272
KWSPV+ +
Sbjct: 150 KWSPVSVVGF 159
>gi|340517857|gb|EGR48100.1| predicted protein [Trichoderma reesei QM6a]
Length = 375
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 134/324 (41%), Gaps = 62/324 (19%)
Query: 65 NSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANN 124
+S+ +D +V++ ++F+L + ANA RR++ AE+PT+AI+ V + N
Sbjct: 7 DSMAIDGEPEQPQVKISAADSTRVDFELSRTNLPFANALRRVIQAEVPTIAIDLVEMEVN 66
Query: 125 TSVIQDEVLAHRLGLIPI---IVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTV 181
+SV+ DE +AHRLGLIP+ V+ + + + E+ ++ LH C + V
Sbjct: 67 SSVLADEFIAHRLGLIPLDSKGVNELNYSRDCDCEQYCEQCSVSLTLHAKCTS-DEIMKV 125
Query: 182 KTNEL---KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITI 238
+L N P+ T PD L I
Sbjct: 126 YARDLVVDGRHANSVGSPIITDPDG------------------------------LGCLI 155
Query: 239 ARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLE-DVEDEDAEKLVKTCP 297
A+L QE+++ A KGI K HAKW P + + P L D+ E+ K P
Sbjct: 156 AKLRKDQELKITCIAKKGIAKEHAKWMPTSAVGFEYDPHNKLHHMDMWFENNTDPEKEWP 215
Query: 298 VNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGAL 357
+ K A +P + GE ++ V + F F +E++G +
Sbjct: 216 KS-----------KYAEWEEPP---------QEGEPFDYDA----VPNRFYFEVEASGTM 251
Query: 358 SPETLFTEAVKILEDKCERVITEL 381
P+ + +++L+ K ++ L
Sbjct: 252 EPDLIIQGGIRVLQQKIGALLKGL 275
>gi|194761112|ref|XP_001962776.1| GF19666 [Drosophila ananassae]
gi|190616473|gb|EDV31997.1| GF19666 [Drosophila ananassae]
Length = 125
Score = 70.9 bits (172), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V++ LT D+++F L + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 132 VLAHRLGLIPIIVD 145
LAHR+GLIP+I D
Sbjct: 63 FLAHRIGLIPLISD 76
>gi|433590977|ref|YP_007280473.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Natrinema
pellirubrum DSM 15624]
gi|448334510|ref|ZP_21523685.1| DNA-directed RNA polymerase subunit D [Natrinema pellirubrum DSM
15624]
gi|448385452|ref|ZP_21563958.1| DNA-directed RNA polymerase subunit D [Haloterrigena thermotolerans
DSM 11522]
gi|433305757|gb|AGB31569.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Natrinema
pellirubrum DSM 15624]
gi|445619842|gb|ELY73359.1| DNA-directed RNA polymerase subunit D [Natrinema pellirubrum DSM
15624]
gi|445656947|gb|ELZ09779.1| DNA-directed RNA polymerase subunit D [Haloterrigena thermotolerans
DSM 11522]
Length = 249
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 120/302 (39%), Gaps = 69/302 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + F + G+ AN RR +IA++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDREARFLVRGVTPGFANGIRRAMIADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+GL+P+ P + E+ E +T+ + V
Sbjct: 65 RMGLVPLTT-PPVGEFA-------EDDTVTLSIDV------------------------- 91
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
PD+ S S DL+ P N PI + D GQ +E EA AV
Sbjct: 92 ---EGPDTAYSG------DLVSEDDLVQPADENVPIIDLKD--------GQRLEAEADAV 134
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAE-KLVKTCPVNVFDIEDIGSGKKR 312
GK HAK YR L + + D+ E ED E ++++ IED G
Sbjct: 135 IDRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEERRIIRGV------IEDDGELVPT 188
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ + K V + V + F+F +E+ G+ S E L T A LE
Sbjct: 189 SEFDHDLSNRYPG----------KEVRVEDVPEAFVFHVETDGSFSIEELVTRAADTLEA 238
Query: 373 KC 374
+
Sbjct: 239 RA 240
>gi|292656898|ref|YP_003536795.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|448290898|ref|ZP_21482043.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|291371468|gb|ADE03695.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|445577951|gb|ELY32371.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
Length = 259
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 118/304 (38%), Gaps = 57/304 (18%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
N+F+VE I F G+ A+AN RR ++A++PT +I+ V NTSV+ DE+
Sbjct: 2 VNDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ FE +T+ L V GP T + +++
Sbjct: 62 IGLRLGLVPLTTPLDDFE---------PGDTVTVALEV----DGP-ATAYSGDIE----- 102
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAH 252
S+ ++P N P I L GQ +E EA
Sbjct: 103 -----------------------SADDMVVPADENIP--------IIELKEGQRLEFEAD 131
Query: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGK 310
AV G GK HAK YR L + ++ D DE +++ G +
Sbjct: 132 AVLGHGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAE 191
Query: 311 KRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
VA E K V + V F+F++E+ G+ + L T AV L
Sbjct: 192 DGDLVATETFGNDLTERYPG-----KEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASL 246
Query: 371 EDKC 374
D+
Sbjct: 247 GDRA 250
>gi|429192481|ref|YP_007178159.1| DNA-directed RNA polymerase subunit alpha [Natronobacterium
gregoryi SP2]
gi|448325893|ref|ZP_21515271.1| DNA-directed RNA polymerase subunit D [Natronobacterium gregoryi
SP2]
gi|429136699|gb|AFZ73710.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronobacterium gregoryi SP2]
gi|445613985|gb|ELY67670.1| DNA-directed RNA polymerase subunit D [Natronobacterium gregoryi
SP2]
Length = 249
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 120/306 (39%), Gaps = 69/306 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + + A AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MTEEYDVEFVERDDRNARFLVRNVTPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 61 QLALRLGLVPLTTPPE-GEF-------GEDDTVTLSIDV----EGP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELE 250
SS DL+ P N PI + D GQ +E E
Sbjct: 103 ------------------------VSSDDLVQPADENVPIIELKD--------GQRLEAE 130
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGS 308
A A GK HAK YR L + ++ DV +E+ ++V+ IED G
Sbjct: 131 AEATLDRGKEHAKHQGGVAVGYRHLQHVEVVGDVPEFEEEGSRIVRGV------IEDDGE 184
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
T + K V I V + F+F +E+ G+ E L T A
Sbjct: 185 ----------LVSTTEFDHDLSNRYPGKEVEIEDVPNAFVFHVETDGSFPIEELVTRAAD 234
Query: 369 ILEDKC 374
+E +
Sbjct: 235 TIEARA 240
>gi|149032428|gb|EDL87319.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_d
[Rattus norvegicus]
Length = 165
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNE----KNTIVFKLHVLCERGGPR 178
+AHRLGLIP+ D + + D + E + ++ F L V C R
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR 113
>gi|448322475|ref|ZP_21511945.1| DNA-directed RNA polymerase subunit D [Natronococcus amylolyticus
DSM 10524]
gi|445601233|gb|ELY55222.1| DNA-directed RNA polymerase subunit D [Natronococcus amylolyticus
DSM 10524]
Length = 249
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 122/313 (38%), Gaps = 83/313 (26%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + GI A AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSEEYDVEFVERGNREGRFLVRGITPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E++ E +T+ + V
Sbjct: 61 QLALRLGLVPLTTPPE-GEFV-------EDDTVTLSIDV--------------------- 91
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
P++ Y+ S D L E ++ ++ I L GQ +E EA
Sbjct: 92 -----------EGPAT---AYSGDLVSSDSLVEAADE------NVPIIELKEGQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEKLVKT--------CPVNVF 301
A GK HAK YR L + +++D+ + E ++V+ P + F
Sbjct: 132 EARLERGKNHAKHQGGVAVGYRHLQRVEVVDDLPEFQEPESQIVRGVVEENGELVPTSEF 191
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
D + P K V + V + F+F +E+ G+ S E
Sbjct: 192 D--------HDLSTRHPG----------------KEVHLEDVPNAFVFHVETDGSFSVEE 227
Query: 362 LFTEAVKILEDKC 374
L T AV +E +
Sbjct: 228 LVTRAVDSIEARA 240
>gi|448391689|ref|ZP_21566784.1| DNA-directed RNA polymerase subunit D [Haloterrigena salina JCM
13891]
gi|445665101|gb|ELZ17779.1| DNA-directed RNA polymerase subunit D [Haloterrigena salina JCM
13891]
Length = 249
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 122/302 (40%), Gaps = 69/302 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + + F + G+ AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVERGEREARFLVRGVTPGFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E T+ + V
Sbjct: 65 RLGLVPLTTPPE--------GEFGEDETVTLSIDV------------------------- 91
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
P++ Y+ S D L + ++ + P++D L Q +E EA AV
Sbjct: 92 -------EGPAT---AYSGDLVSNDELVQPADQNV-PIID-----LKDDQRLEAEADAVV 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
GK HAK YR L ++ ++ D+ EDE++ ++V+ IED G
Sbjct: 136 DYGKDHAKHQGGVAVGYRHLQQVEVVGDLPEFEDEES-RIVRGV------IEDNGELVPT 188
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
+ + K V + V + F+F +E+ G+ S E L T A +E
Sbjct: 189 SEFDHDLSNRYPG----------KEVEVEDVPNAFVFHVETDGSFSVEELVTRAADSIES 238
Query: 373 KC 374
+
Sbjct: 239 RA 240
>gi|222480231|ref|YP_002566468.1| RNA polymerase insert [Halorubrum lacusprofundi ATCC 49239]
gi|222453133|gb|ACM57398.1| RNA polymerase insert [Halorubrum lacusprofundi ATCC 49239]
Length = 250
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 117/294 (39%), Gaps = 73/294 (24%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A AN RR +IA++PT +I+ V N+SV+ DE++ RLGLIP+ FE
Sbjct: 24 GLTPAFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLKTPLDDFEVGD 83
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E + L V P++ Y+
Sbjct: 84 E---------VTLALDV--------------------------------EGPAT---AYS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L E +++ +I I L GQ +E EA AV GK HAK + YR
Sbjct: 100 GDIESADPLVEVADD------NIPIIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYR 153
Query: 274 MLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA-CTLCRECLRC 330
L + + D+ D+D +++ R + P L E
Sbjct: 154 HLQRVSVEGDLGEFDDDEPRIL------------------RGVIETPDGEIELTDEFDND 195
Query: 331 GEEW--EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
E K VS+ V F+F IE+ G+ S E L A+ +E++ + + T+++
Sbjct: 196 LSERFPGKEVSVEDVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQTKVA 249
>gi|395506009|ref|XP_003757328.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 2
[Sarcophilus harrisii]
Length = 252
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 123/316 (38%), Gaps = 82/316 (25%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT ++++F + D A+AN+ RR+ IAE+P
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPI------------------ 44
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEK----NTIVFKLHVLCERGGPRLTVKTNELK 187
+GLIP+ D + + D + E+ ++ F L V C R + +
Sbjct: 45 -----IGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI- 98
Query: 188 WLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEI 247
S+ PR S S+D P N DI I +L GQE+
Sbjct: 99 ------------------SNTPRVIPVTSRSRDNDP----NDYVEQDDILIVKLRKGQEL 136
Query: 248 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVF-DIEDI 306
L A+A KGIGK HAKW+P A + P+ L V + E P + + +I++
Sbjct: 137 RLRAYAKKGIGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEE-----WPKSEYSEIDED 191
Query: 307 GSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
+ +P + F + +ES G+L PET+ A
Sbjct: 192 EAQAPYDPNGKP--------------------------ERFYYNVESCGSLRPETIVLSA 225
Query: 367 VKILEDKCERVITELS 382
+ L+ K + T+L+
Sbjct: 226 LSGLKKKLSDLQTQLT 241
>gi|448314284|ref|ZP_21503984.1| DNA-directed RNA polymerase subunit D [Natronolimnobius
innermongolicus JCM 12255]
gi|445595544|gb|ELY49650.1| DNA-directed RNA polymerase subunit D [Natronolimnobius
innermongolicus JCM 12255]
Length = 249
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 121/301 (40%), Gaps = 67/301 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + F + G+ AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVERGDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P E T+ + V GP T + +L
Sbjct: 65 RLGLVPLTTPP--------EGEFGEDETVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + + P N PI + D GQ +E EA AV
Sbjct: 103 -------------------VSSDELVQPADENVPIIELKD--------GQRLEAEADAVV 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAE-KLVKTCPVNVFDIEDIGSGKKRA 313
GK HAK YR L + +++D+ E E++E ++V+ IED G
Sbjct: 136 DRGKDHAKHQGGVAVGYRHLQRVEVVDDLPEFEESEPQIVRGV------IEDDGD----- 184
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDK 373
T + K+V + V + F+F +E+ G+ S E L A +E +
Sbjct: 185 -----LVPTSEFDHDLTNRYPGKQVELEDVPNAFVFHVETDGSFSVEELVARAADSIESR 239
Query: 374 C 374
Sbjct: 240 A 240
>gi|448378226|ref|ZP_21560700.1| DNA-directed RNA polymerase subunit D [Halovivax asiaticus JCM
14624]
gi|445654208|gb|ELZ07062.1| DNA-directed RNA polymerase subunit D [Halovivax asiaticus JCM
14624]
Length = 250
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 126/306 (41%), Gaps = 68/306 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+++ VE + T+ + + GI A AN RR ++A++PT+AI+ V N+SV+ DE
Sbjct: 1 MASDYDVEFVERTEREARILVRGITPAFANGIRRAMVADVPTLAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
L RLGL+P+ P E+ ++ V L + E GP T + +L
Sbjct: 61 QLGLRLGLVPLTT-PTPEEFGDDD---------VVTLSIDVE--GP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS DL+ N + I +L Q +E EA
Sbjct: 103 -----------------------VSSEPDLVKPADEN-------VPIIQLKDDQRLEAEA 132
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSG 309
AV GK HAK YR L + + D+ +E+ ++V+ IED G
Sbjct: 133 EAVYDHGKNHAKHQGGVAVGYRHLQRVTVDGDLPEFEEEESQIVRGV------IEDDGEL 186
Query: 310 KKRATVAQPRACTLCRECLRCGEEW-EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
+ E + K V++ V + F+F +E+ G+ + E L T AV
Sbjct: 187 IPTSEFGH-----------DLTERYPGKDVTVEDVPNAFVFHVETDGSFAVEELVTRAVD 235
Query: 369 ILEDKC 374
++D+
Sbjct: 236 SIDDRA 241
>gi|433638723|ref|YP_007284483.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Halovivax
ruber XH-70]
gi|433290527|gb|AGB16350.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Halovivax
ruber XH-70]
Length = 250
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 127/307 (41%), Gaps = 70/307 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+++ VE + T+ + + GI A AN RR ++A++PT+AI+ V N+SV+ DE
Sbjct: 1 MASDYDVEFVERTEREARILVRGITPAFANGIRRAMVADVPTLAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
L RLGL+P+ P E+ ++ V L + E GP T + +L
Sbjct: 61 QLGLRLGLVPLTT-PTPEEFGDDD---------VVTLSIDVE--GP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS DL+ N + I +L Q +E EA
Sbjct: 103 -----------------------VSSEPDLVKPADEN-------VPIIQLKDDQRLEAEA 132
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVL---LEDVEDEDAEKLVKTCPVNVFDIEDIGS 308
AV GK HAK YR L + + L + EDE+ ++V+ IED G
Sbjct: 133 DAVYDHGKKHAKHQGGVAVGYRHLQRVTVDGDLPEFEDEET-QIVRGV------IEDDGE 185
Query: 309 GKKRATVAQPRACTLCRECLRCGEEW-EKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ E + K V++ V + F+F +E+ G+ + E L T AV
Sbjct: 186 LIPTSEFGH-----------DLTERYPGKDVTVEDVPNAFVFHVETDGSFAVEELVTRAV 234
Query: 368 KILEDKC 374
++D+
Sbjct: 235 GSIDDRA 241
>gi|448465603|ref|ZP_21598869.1| DNA-directed RNA polymerase subunit D [Halorubrum kocurii JCM
14978]
gi|445814935|gb|EMA64883.1| DNA-directed RNA polymerase subunit D [Halorubrum kocurii JCM
14978]
Length = 250
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 119/300 (39%), Gaps = 85/300 (28%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A AN RR +IA++PT +I+ V N+SV+ DE++ RLGLIP+ FE
Sbjct: 24 GLTPAFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLKTPLDDFEVGD 83
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E + L V P++ Y+
Sbjct: 84 E---------VTLALDV--------------------------------EGPAT---AYS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L E +++ ++ I L GQ +E EA AV GK HAK + YR
Sbjct: 100 GDIESSDPLVEVADD------NVPIIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYR 153
Query: 274 MLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
L + + D+ D+D +++ R + P +
Sbjct: 154 HLQRVSVEGDLGEFDDDEPRIL------------------RGVIETPDG------EIELT 189
Query: 332 EEWE---------KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+E++ K VSI V F+F IE+ G+ S E L A+ +E++ + + T+++
Sbjct: 190 DEFDNDLSKRFPGKEVSIEDVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQTKVA 249
>gi|302908578|ref|XP_003049900.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730836|gb|EEU44187.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 335
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 130/312 (41%), Gaps = 62/312 (19%)
Query: 77 RVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 136
+V++ ++F+L + A ANA RR++ AE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 16 QVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIAHR 75
Query: 137 LGLIPIIVDPRLFEYMSENDTSN-----EKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LGLIP+ D + ++ + + E+ ++ LH C +K + +
Sbjct: 76 LGLIPL--DSKGVGELNNSRDCDCEQYCEQCSVTLNLHAKCTS---DEIMKVYARDLVVD 130
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
G R S S PE IA+L QE+++
Sbjct: 131 G-----------------RHANSVGSPVITDPE--------GYGCLIAKLRKDQELKITC 165
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVL--LEDVEDEDAEKLVKTCPVNVFDIEDIGSG 309
A KGI K HAKW P + + P L L+ + D + V+ ED
Sbjct: 166 IAKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFENDTDPEVEWPKSKYAQWED---- 221
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
P+ GE ++ V + F F +E++G++ P+ + +++
Sbjct: 222 -------PPQE----------GEPFDYDA----VPNRFYFEVETSGSMEPDQIVQSGIRV 260
Query: 370 LEDKCERVITEL 381
L+ K ++ L
Sbjct: 261 LQQKIGGLLKGL 272
>gi|345004807|ref|YP_004807660.1| DNA-directed RNA polymerase [halophilic archaeon DL31]
gi|344320433|gb|AEN05287.1| DNA-directed RNA polymerase [halophilic archaeon DL31]
Length = 253
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 128/310 (41%), Gaps = 67/310 (21%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLI---GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVI 128
+ F VE IR DD L+ G+ A AN RR ++A++PT++I+ V + N+SV+
Sbjct: 1 MSDEFDVEFIR---DDDRNTLVLVRGLTPAFANGLRRAMVADVPTLSIDTVRMVQNSSVM 57
Query: 129 QDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKW 188
DE++ RLGL+P+ P FE +T+ L V GP T + +++
Sbjct: 58 FDEMIGLRLGLVPLTT-PDDFEI---------GDTVTLALDVE----GP-ATAYSGDIE- 101
Query: 189 LPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIE 248
SS D+ P N PI +++ G Q IE
Sbjct: 102 ---------------------------SSDPDVQPADENIPI---IELKENPSGENQRIE 131
Query: 249 LEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLVKTCPVNVFDIEDIG 307
LEA AV G H K S YR L ++ ++ D E +D E + + D E +
Sbjct: 132 LEAEAVLERGSDHVKQSGGVAVGYRHLQQVSVVGDTGEFDDEEPNILRGVIETEDGELLH 191
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + + Q K + + V F+F +E+ G++S + L +
Sbjct: 192 TDEFGNDLTQKYPG--------------KELDVEDVPGAFVFHVETDGSMSAQELVLRGI 237
Query: 368 KILEDKCERV 377
+E + + +
Sbjct: 238 DSIESRADEL 247
>gi|448578450|ref|ZP_21643885.1| DNA-directed RNA polymerase subunit D [Haloferax larsenii JCM
13917]
gi|448592478|ref|ZP_21651585.1| DNA-directed RNA polymerase subunit D [Haloferax elongans ATCC
BAA-1513]
gi|445726991|gb|ELZ78607.1| DNA-directed RNA polymerase subunit D [Haloferax larsenii JCM
13917]
gi|445731483|gb|ELZ83067.1| DNA-directed RNA polymerase subunit D [Haloferax elongans ATCC
BAA-1513]
Length = 260
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 122/311 (39%), Gaps = 70/311 (22%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
++F VE I F G+ A+AN RR +IA++PT +IE V NTSV+ DE+
Sbjct: 2 ADDFEVEFIEREDRRARFVARGLTPALANGIRRAMIADVPTFSIETVRFVENTSVMFDEM 61
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
+ RLGL+P+ T L G
Sbjct: 62 IGLRLGLVPL----------------------------------------TTPLDEFEPG 81
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQD--LLPEFSNNPIRPMLDITIARLGPGQEIELE 250
+ + + D ++ Y+ S D ++P N P I L GQ +E E
Sbjct: 82 DSVTVALEVDGPATA----YSGDIESADDMVVPADENVP--------IIELKEGQRLEFE 129
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGS 308
A AV G GK HA+ + YR L + ++ D DE +++ IE+ +
Sbjct: 130 ADAVLGYGKDHARNQGGVSVGYRHLQRVEVVGDAGEFDEQEPNILRGV------IEEAAA 183
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKR-----VSIRRVKDHFIFTIESTGALSPETLF 363
A+ + E G + KR V + V F+F++E+ G+ + + L
Sbjct: 184 EHAADEDAEDGDLVVTDE---FGNDLTKRYPGKDVEVHDVPGAFVFSVETDGSFTVDELV 240
Query: 364 TEAVKILEDKC 374
T AV + D+
Sbjct: 241 TRAVASIGDRA 251
>gi|402467489|gb|EJW02781.1| hypothetical protein EDEG_02821 [Edhazardia aedis USNM 41457]
Length = 244
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 36/204 (17%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
++ VI T + + L A AN+ RR+LI+E+P++A + +LI NT+V+ D+ +AH
Sbjct: 1 MQLTVIEQTDNVLSLRLEKTTIAFANSLRRVLISEIPSIAFDLILIKENTTVLPDDYIAH 60
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+GLIPI T++ K+ ++ C+ ++ + ++
Sbjct: 61 RIGLIPIF------------HTNDPKHNLISHTECHCQGYCESCSITCDLVQ-------- 100
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML--DITIARLGPGQEIELEAHA 253
+N +S+ TS S LLP+ N R M +I I +L Q++ L A A
Sbjct: 101 -------ANTTSECLLVTSSS----LLPK---NFERKMFNENIPIVKLQRRQKLCLTAVA 146
Query: 254 VKGIGKTHAKWSPVATAWYRMLPE 277
KGI K ++KW V + P+
Sbjct: 147 RKGIAKDNSKWQVVNNVGFEYDPD 170
>gi|118490838|ref|XP_001238728.1| rna polymerase ii b3 subunit [Eimeria tenella strain Houghton]
gi|109238511|emb|CAK51475.1| rna polymerase ii b3 subunit [Eimeria tenella]
Length = 147
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+ V L+ + F L DA+IANA RR++I+E+PT+AI+ V + NTSV+ DE + HRL
Sbjct: 44 IRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHRL 103
Query: 138 GLIPI 142
GL+PI
Sbjct: 104 GLLPI 108
>gi|448346280|ref|ZP_21535166.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
gi|445632869|gb|ELY86075.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
Length = 249
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 122/303 (40%), Gaps = 71/303 (23%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + F + G+ AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P + E+ E T+ + V GP T + +L
Sbjct: 65 RLGLVPLTT-PPVGEF-------GEDETVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS DL+ P N PI + D GQ +E EA AV
Sbjct: 103 --------------------VSSDDLVEPADENVPIIELKD--------GQRLEAEADAV 134
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVL---LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
GK HAK YR L + + L + EDE++ ++++ IED G
Sbjct: 135 IDRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEES-RIIRGV------IEDDGE--- 184
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILE 371
T + K V I V + F+F +E+ G+ E L T A +
Sbjct: 185 -------LVSTSEFDHDLSNRYPGKEVRIEDVPNAFVFHVETDGSFPIEELVTRAADTIA 237
Query: 372 DKC 374
++
Sbjct: 238 ERA 240
>gi|385804352|ref|YP_005840752.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi C23]
gi|339729844|emb|CCC41127.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi C23]
Length = 262
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 127/330 (38%), Gaps = 88/330 (26%)
Query: 72 FCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
++F +E I DD F + G+ A+AN RR ++A++PT +IE V N+SV+
Sbjct: 1 MTDDFDIEFIERDTDDRSARFLVRGVTPAVANGIRRAMVADIPTFSIEDVRFVENSSVMF 60
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
DE++ RLGL+P+ F+ +T+ L + GP+
Sbjct: 61 DEMIGLRLGLVPLTTPVDDFDI---------GDTVTLSLDIT----GPQT---------- 97
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
Y+ S D L E ++ +I I L +EL
Sbjct: 98 ---------------------AYSGDIVSSDRLVEPADE------NIPIIELKENHRLEL 130
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE---DEDAEKLVKTCPVNVFDIEDI 306
EA AV GK+HAK YR L I ++ D + DED L
Sbjct: 131 EADAVLDTGKSHAKQQGGVAVGYRHLQRIEVIGDADEFADEDPHIL-------------- 176
Query: 307 GSGKKRATVAQPRACTLCRECLRCGE-----EWE---------KRVSIRRVKDHFIFTIE 352
R + + A E G+ E++ K +++ V + +F +E
Sbjct: 177 -----RGVIEEGAAAHAVDETATNGDLIPTTEFDNDLTNRYPGKELTVSDVPNAVVFHVE 231
Query: 353 STGALSPETLFTEAVKILEDKCERVITELS 382
+ G+ S L A + L D+ + T+++
Sbjct: 232 TDGSFSVPELVERAARSLGDRAAELETKVA 261
>gi|383621940|ref|ZP_09948346.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
gi|448702865|ref|ZP_21700222.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
gi|445776958|gb|EMA27934.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
Length = 249
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 126/307 (41%), Gaps = 71/307 (23%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + + F + GI AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSEEYDVEFVEHGEREARFLVRGISPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E+ E +T+ + V GP
Sbjct: 61 QLALRLGLVPLTTPPE-GEF-------GEDDTVTLSIDV----EGP-------------- 94
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPM-LDITIARLGPGQEIELE 250
T++S DL+ E ++ ++P ++ I L Q +E E
Sbjct: 95 --------------------ATAYSG--DLVSE--DDLVQPADENVPIIELKEDQRLEAE 130
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV---EDEDAEKLVKTCPVNVFDIEDIG 307
A AV GK HAK YR L + ++ D+ EDE++ ++V+ IED G
Sbjct: 131 ADAVLDHGKDHAKHQGGVAIGYRHLQRVEVVGDLPEFEDEES-RIVRGV------IEDDG 183
Query: 308 SGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAV 367
+ + K V + V + F+F +E+ G+L E L T A
Sbjct: 184 ELVPTSEFDHDLSNRYPG----------KEVEVEDVPNAFVFHVETDGSLDVEELVTRAA 233
Query: 368 KILEDKC 374
+E +
Sbjct: 234 DSIEARA 240
>gi|149032427|gb|EDL87318.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_c
[Rattus norvegicus]
Length = 92
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ N V + LT+++++F + D A+AN+ RR+ IAE+P +AI+ V I N+SV+ DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 132 VLAHRLGLIPIIVD 145
+AHRLGLIP+ D
Sbjct: 63 FIAHRLGLIPLTSD 76
>gi|110668834|ref|YP_658645.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi DSM
16790]
gi|109626581|emb|CAJ53045.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi DSM
16790]
Length = 262
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 127/330 (38%), Gaps = 88/330 (26%)
Query: 72 FCNNFRVEVIRLTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQ 129
++F +E I DD F + G+ A+AN RR ++A++PT +IE V N+SV+
Sbjct: 1 MTDDFDIEFIERDTDDRSARFLVRGVTPAVANGIRRAMVADIPTFSIEDVRFVENSSVMF 60
Query: 130 DEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWL 189
DE++ RLGL+P+ F+ +T+ L + GP+
Sbjct: 61 DEMIGLRLGLVPLTTPVDDFDI---------GDTVTLSLDIT----GPQT---------- 97
Query: 190 PNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIEL 249
Y+ S D L E ++ +I I L +EL
Sbjct: 98 ---------------------AYSGDIVSSDRLVEPADE------NIPIIELKENHRLEL 130
Query: 250 EAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE---DEDAEKLVKTCPVNVFDIEDI 306
EA AV GK+HAK YR L I ++ D + DED L
Sbjct: 131 EADAVLDTGKSHAKQQGGVAVGYRHLQRIEVIGDADEFADEDPHIL-------------- 176
Query: 307 GSGKKRATVAQPRACTLCRECLRCGE-----EWE---------KRVSIRRVKDHFIFTIE 352
R + + A E G+ E++ K +++ V + +F +E
Sbjct: 177 -----RGVIEEGAATHAVDETATNGDLIPTTEFDNDLTNRYPGKELTVSDVPNAVVFHVE 231
Query: 353 STGALSPETLFTEAVKILEDKCERVITELS 382
+ G+ S L A + L D+ + T+++
Sbjct: 232 TDGSFSVPELVERAARSLGDRAAELETKVA 261
>gi|284165822|ref|YP_003404101.1| RNA polymerase insert [Haloterrigena turkmenica DSM 5511]
gi|284015477|gb|ADB61428.1| RNA polymerase insert [Haloterrigena turkmenica DSM 5511]
Length = 249
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 113/284 (39%), Gaps = 69/284 (24%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ AN RR ++A++PTMAI+ V N+SV+ DE LA RLGL+P+ P E+
Sbjct: 23 GVTPGFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPE-GEF-- 79
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E T+ + V GP T + +L
Sbjct: 80 -----GEDETVTLSIDV----EGP-ATAYSGDL--------------------------- 102
Query: 214 SFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 272
SS DL+ P N PI + D Q +E EA AV GK HAK Y
Sbjct: 103 --VSSDDLVQPADENVPIIDLKD--------DQRLEAEADAVLDYGKDHAKHQGGVAVGY 152
Query: 273 RMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRC 330
R L + ++ D+ +E+ ++V+ IED G + +
Sbjct: 153 RHLQRVEVVGDLPEFEEEESRIVRGV------IEDDGELVPTSEFDHDLSNRYPG----- 201
Query: 331 GEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKC 374
K V I V + F+F +E+ G+ S E L T A +E +
Sbjct: 202 -----KEVEIEDVPNAFVFHVETDGSFSVEELVTRAADSIESRA 240
>gi|448337141|ref|ZP_21526223.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
gi|445626487|gb|ELY79830.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
Length = 249
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 121/306 (39%), Gaps = 69/306 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + G+ AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSTEYDVEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P + E+ E T+ + V GP T + +L
Sbjct: 61 QLALRLGLVPLTT-PPVGEF-------GEDETVTLSIDV----EGP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELE 250
SS DL+ P N PI + D GQ +E E
Sbjct: 103 ------------------------VSSDDLVQPADENVPIIELKD--------GQRLEAE 130
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAE-KLVKTCPVNVFDIEDIGS 308
A AV GK HAK YR L + + D+ E ED E ++++ IED G
Sbjct: 131 ADAVIDRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEERRIIRGV------IEDDGE 184
Query: 309 GKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVK 368
T + K V I V + F+F +E+ G+ E L T A
Sbjct: 185 ----------LVSTSEFDHDLSNRYPGKEVRIEDVPNAFVFHVETDGSFPIEELVTRAAD 234
Query: 369 ILEDKC 374
+ ++
Sbjct: 235 TIAERA 240
>gi|268324993|emb|CBH38581.1| putative DNA-directed RNA polymerase, subunit D [uncultured
archaeon]
Length = 213
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 42/205 (20%)
Query: 92 LIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEY 151
L G+ ANA RR++IAE+P +AI+++ I NTS++ DE LA RL L+P+ D + ++
Sbjct: 17 LSGVKVRFANALRRVMIAEVPKLAIDELNIRENTSLLYDEQLALRLALVPLKTDLKDYK- 75
Query: 152 MSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRT 211
E++ I L V + EL + + P +S+
Sbjct: 76 --------EEDQITLTLKATSPEKAGHTMVYSKEL----------ISSYPKVEAASENIP 117
Query: 212 YTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAW 271
S++ + T+AR Q+I+L+A A G G+ HAKW PV
Sbjct: 118 IVKLISTEREIGAIK----------TVAR----QKIDLDAIARWGRGEEHAKWQPVTICG 163
Query: 272 YRMLPEIVLLEDVEDEDAEKLVKTC 296
Y+ ++ DED L+ T
Sbjct: 164 YK---------NISDEDVNNLLFTV 179
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 345 DHFIFTIESTGALSPETLFTEAVKILEDKCERVITEL 381
++ +FT+ES GAL + + EA +I+++KCER++ L
Sbjct: 173 NNLLFTVESDGALPVDEIILEAARIMQEKCERMVEAL 209
>gi|397772870|ref|YP_006540416.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|448340555|ref|ZP_21529526.1| DNA-directed RNA polymerase subunit D [Natrinema gari JCM 14663]
gi|397681963|gb|AFO56340.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|445629988|gb|ELY83258.1| DNA-directed RNA polymerase subunit D [Natrinema gari JCM 14663]
Length = 249
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 121/302 (40%), Gaps = 69/302 (22%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + F + G+ AN RR ++A++PTMAI+ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
RLGL+P+ P + E+ E T+ + V GP T + +L
Sbjct: 65 RLGLVPLTT-PPVGEF-------GEDETVTLSIDV----EGP-ATAYSGDL--------- 102
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVK 255
SS + + P N PI + D GQ +E EA AV
Sbjct: 103 -------------------VSSDELVKPADENVPIIELKD--------GQRLEAEADAVI 135
Query: 256 GIGKTHAKWSPVATAWYRMLPEIVL---LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
GK HAK YR L + + L + EDE++ ++++ IED G
Sbjct: 136 DRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEES-RIIRGV------IEDDGE---- 184
Query: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
T + K V I V + F+F +E+ G+ E L T A + +
Sbjct: 185 ------LVSTSEFDHDLSNRYPGKEVRIEDVPNAFVFHVETDGSFPIEELVTRAADTIAE 238
Query: 373 KC 374
+
Sbjct: 239 RA 240
>gi|448303016|ref|ZP_21492966.1| DNA-directed RNA polymerase subunit D [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594023|gb|ELY48190.1| DNA-directed RNA polymerase subunit D [Natronorubrum sulfidifaciens
JCM 14089]
Length = 249
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 125/305 (40%), Gaps = 67/305 (21%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
++ VE + F + G+ A AN RR ++A++PT+AI+ V N+SV+ DE
Sbjct: 1 MTEDYDVEFVEHEDRYARFLVRGVTPAFANGLRRAMLADVPTLAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 61 QLALRLGLVPLTTPPEA-EFA-------EGDTVTLSIDV----EGP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLL-PEFSNNPIRPMLDITIARLGPGQEIELE 250
SS DL+ P N PI + D Q +E E
Sbjct: 103 ------------------------VSSDDLVQPADENVPIIDLKD--------DQRLEAE 130
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLVKTCPVNVFDIEDIGSG 309
A AV GK HAK +A YR L + +++D+ E E+ E + + D E I +
Sbjct: 131 ADAVFNRGKNHAKHQGAVSAGYRHLQRVEVVDDLPEFEEQESRIIRGVIEA-DGELIQTS 189
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ ++ K+V I V + F+F IE+ G+ + L T A
Sbjct: 190 EFDHDLSNRYPG--------------KQVEIEDVPNAFVFNIETDGSFPVDELVTRAADS 235
Query: 370 LEDKC 374
+E +
Sbjct: 236 IEARA 240
>gi|435847148|ref|YP_007309398.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronococcus occultus SP4]
gi|433673416|gb|AGB37608.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronococcus occultus SP4]
Length = 249
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 121/313 (38%), Gaps = 83/313 (26%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + GI AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSEEYDVEFVERGDREARFLVRGISPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E++ E +T+ + V
Sbjct: 61 QLALRLGLVPLTTPPE-GEFV-------EDDTVTLSIDV--------------------- 91
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
P++ Y+ S D L E ++ ++ I L GQ +E EA
Sbjct: 92 -----------EGPAT---AYSGDLVSSDSLVEPADE------NVPIIELKEGQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEKLVKT--------CPVNVF 301
A GK HAK YR L + +++D+ + E ++V+ P + F
Sbjct: 132 DARLERGKDHAKHQGGVAVGYRHLQRVEVVDDLPEFQEPESRIVRGVVEENGELVPTSEF 191
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
D + + P K V + V + F+F +E+ G+ S E
Sbjct: 192 DHD--------LSTRHPG----------------KEVRLEDVPNAFVFHVETDGSFSVEE 227
Query: 362 LFTEAVKILEDKC 374
L T A LE +
Sbjct: 228 LVTRATDSLEARA 240
>gi|407925105|gb|EKG18126.1| DNA-directed RNA polymerase RBP11-like protein [Macrophomina
phaseolina MS6]
Length = 287
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 113/284 (39%), Gaps = 78/284 (27%)
Query: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFE---YMSENDTSN--EKNTIVFKL 168
MAI+ V + NTSV+ DE + HRLGLIP+ + R E Y + D E +++ L
Sbjct: 1 MAIDLVEVEKNTSVLADEFICHRLGLIPL--NSRGCEDVAYTRDCDCEQYCENCSVLLTL 58
Query: 169 HVLCERGGPRLTVKTNEL--------KWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQD 220
+ C G +TV +L +W+ + P+ P+ + +
Sbjct: 59 NARC-TGDEVMTVYARDLLVSAARANEWVGS----PVIKDPNGHGA-------------- 99
Query: 221 LLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVL 280
I +L GQE+++ A KGI K HAKW+P A + P L
Sbjct: 100 ----------------IICKLRKGQELKMRCIAKKGIAKEHAKWAPTAAIGFEYDPHNKL 143
Query: 281 --LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRV 338
LE ++D +K F+ + G+ AQP
Sbjct: 144 RHLEYWFEDDPQKEWPISDNANFEGDPPQEGEPFNYDAQPT------------------- 184
Query: 339 SIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
F F +ES G L P+T+ + VK+L+ K VI EL+
Sbjct: 185 -------QFYFNLESVGGLEPDTIMLQGVKVLQQKLAEVIGELT 221
>gi|448440158|ref|ZP_21588406.1| DNA-directed RNA polymerase subunit D [Halorubrum saccharovorum DSM
1137]
gi|445690675|gb|ELZ42885.1| DNA-directed RNA polymerase subunit D [Halorubrum saccharovorum DSM
1137]
Length = 250
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 115/294 (39%), Gaps = 73/294 (24%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A AN RR +IA++PT +I+ V N+SV+ DE++ RLGL+P+
Sbjct: 24 GLTPAFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLVPL----------- 72
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
T L G E+ L + ++ Y+
Sbjct: 73 -----------------------------TTPLDDFEIGDEVTLALDVEGPATA----YS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
D L E +++ +I I L GQ +E EA AV GK HAK + YR
Sbjct: 100 GDIECADPLVEVADD------NIPIIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYR 153
Query: 274 MLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA-CTLCRECLRC 330
L + + D+ D+D +++ R + P L E
Sbjct: 154 HLQRVTVEGDLGEFDDDEPRIL------------------RGVIETPDGDIELTDEFDND 195
Query: 331 GEEW--EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
E K VS+ V F+F IE+ G+ E L A+ +E++ + + T+++
Sbjct: 196 LSERFPGKEVSVEDVPGAFVFHIETDGSFDVEELLLRAIDSIEERADELQTKVA 249
>gi|448306201|ref|ZP_21496110.1| DNA-directed RNA polymerase subunit D [Natronorubrum bangense JCM
10635]
gi|445598615|gb|ELY52670.1| DNA-directed RNA polymerase subunit D [Natronorubrum bangense JCM
10635]
Length = 249
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 120/293 (40%), Gaps = 65/293 (22%)
Query: 75 NFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLA 134
++ VE + F + G+ A AN RR ++A++PT+AI+ V N+SV+ DE LA
Sbjct: 4 DYDVEFVEHEDRYARFLVRGVTPAFANGLRRAMLADVPTLAIDTVRFIENSSVMFDEQLA 63
Query: 135 HRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSE 194
RLGL+P+ P E+ E +T+ + V GP T + +L
Sbjct: 64 LRLGLVPLTTPPEA-EFA-------EDDTVTLSIDV----EGP-ATAYSGDL-------- 102
Query: 195 LPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAV 254
SS DL+ N I I L Q +E EA AV
Sbjct: 103 ---------------------VSSDDLVQPADEN-------IPIIDLKDNQRLEAEADAV 134
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVLLEDV-EDEDAEKLVKTCPVNVFDIEDIGSGKKRA 313
GK HAK +A YR L + +++D+ E E+ E + + D E I + +
Sbjct: 135 FNRGKNHAKHQGAVSAGYRHLQRVTVVDDLPEFEEQESRIIRGVIEA-DGELIQTSEFDN 193
Query: 314 TVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEA 366
++ K+V + V + F+F IE+ G+ + L T A
Sbjct: 194 DLSNRYPG--------------KQVEVEDVPNAFVFNIETDGSFPVDELVTRA 232
>gi|448491314|ref|ZP_21608255.1| DNA-directed RNA polymerase subunit D [Halorubrum californiensis
DSM 19288]
gi|445693085|gb|ELZ45247.1| DNA-directed RNA polymerase subunit D [Halorubrum californiensis
DSM 19288]
Length = 250
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 116/292 (39%), Gaps = 69/292 (23%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A AN RR +IA++PT +I+ V N+SV+ DE++ RLGL+P+ FE
Sbjct: 24 GLTPAFANGIRRAMIADVPTFSIDTVQFVENSSVMFDEMIGLRLGLVPLTTPLDDFELGD 83
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
E + L V P++ Y+
Sbjct: 84 E---------VTLALDV--------------------------------EGPAT---AYS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L E +++ ++ I L GQ +E EA+AV GK HAK + YR
Sbjct: 100 GDIESSDPLVEVADD------NVPIIELKEGQRLEFEANAVLDTGKEHAKHQGGVSVGYR 153
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA-CTLCRECLRCGE 332
L + + D + D ++ N+ R + P L E
Sbjct: 154 HLQRVSVEGDRGEFDDDE------PNIL----------RGVIEAPEGDIELTDEFDNDLS 197
Query: 333 EW--EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
E K V++ V F+F IE+ G+ E L A+ +E++ + + T+++
Sbjct: 198 ERFPGKEVAVEEVPGAFVFHIETDGSFDVEELLLRAIDSIEERADELQTKVA 249
>gi|448460443|ref|ZP_21597268.1| DNA-directed RNA polymerase subunit D [Halorubrum lipolyticum DSM
21995]
gi|445807184|gb|EMA57270.1| DNA-directed RNA polymerase subunit D [Halorubrum lipolyticum DSM
21995]
Length = 250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 85/300 (28%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A AN RR +IA++PT +I+ V N+SV+ DE++ RLGL+P+
Sbjct: 24 GLTPAFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLVPL----------- 72
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
T L G E+ L + P++ Y+
Sbjct: 73 -----------------------------TTPLDDFEVGDEVTLALDVE-GPAT---AYS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L +++ ++ I L GQ +E EA AV GK HAK + YR
Sbjct: 100 GDIESADPLVGVADD------NVPIIELKEGQRLEFEATAVLDSGKEHAKHQGGVSVGYR 153
Query: 274 MLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCG 331
L + + D+ D+D +++ R + P +
Sbjct: 154 HLQRVSVEGDLGEFDDDEPRIL------------------RGVIETPDG------SIELT 189
Query: 332 EEWE---------KRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
+E++ K VS+ V F+F IE+ G+ S E L A+ +E++ + + T+++
Sbjct: 190 DEFDNDLSERFPGKEVSVEDVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQTKVA 249
>gi|255513546|gb|EET89812.1| RNA polymerase insert [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 191
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 51/189 (26%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV+R EF L G A ANA RRI I + AI+KV + NTS + DE +AHR+
Sbjct: 3 IEVLRDDDKVFEFVLKGATANYANALRRIAINGIKAFAIDKVTVYENTSSMFDEYIAHRI 62
Query: 138 GLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPL 197
GL+P+I P S++K+ I+F L E GP T+ + L+
Sbjct: 63 GLVPLIT-PH---------GSSDKDEILFTL----EAAGPG-TIYSKSLE---------- 97
Query: 198 ETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGI 257
SS + ++ NP +I I +LG Q+I +E AV G
Sbjct: 98 ------------------SSDKSVV---VANP-----NIPIIKLGRDQKIRIEGKAVMGS 131
Query: 258 GKTHAKWSP 266
HAK+ P
Sbjct: 132 ALKHAKFQP 140
>gi|448330852|ref|ZP_21520128.1| DNA-directed RNA polymerase subunit D [Natrinema versiforme JCM
10478]
gi|445610688|gb|ELY64457.1| DNA-directed RNA polymerase subunit D [Natrinema versiforme JCM
10478]
Length = 249
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 122/299 (40%), Gaps = 71/299 (23%)
Query: 76 FRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAH 135
+ VE + + F + G+ AN RR ++A++PTMA++ V N+SV+ DE LA
Sbjct: 5 YDVEFVEREDREARFLIRGVTPGFANGIRRAMVADVPTMAVDTVRFVENSSVMFDEQLAL 64
Query: 136 RLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSEL 195
R+GL+P+ P + E+ E T+ + V GP
Sbjct: 65 RMGLVPLTT-PPVGEF-------GEDETVTLSIDVE----GP------------------ 94
Query: 196 PLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD-ITIARLGPGQEIELEAHAV 254
T++S DL+ E ++ ++P D + I L GQ +E EA AV
Sbjct: 95 ----------------ATAYSG--DLVSE--DDLVQPADDNVPIIELKDGQRLEAEADAV 134
Query: 255 KGIGKTHAKWSPVATAWYRMLPEIVL---LEDVEDEDAEKLVKTCPVNVFDIEDIGSGKK 311
GK HAK YR L + + L + EDE++ ++++ IED G
Sbjct: 135 VNRGKNHAKHQGGVAVGYRHLQRVEVDGDLPEFEDEES-RIIRGV------IEDDGE--- 184
Query: 312 RATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKIL 370
T + K V + V + F+F +E+ G+ E L T A +
Sbjct: 185 -------LVATSEFDHDLSNRYPGKEVRVEDVPNAFVFHVETDGSFPIEELATRAADTI 236
>gi|448317558|ref|ZP_21507108.1| DNA-directed RNA polymerase subunit D [Natronococcus jeotgali DSM
18795]
gi|445602949|gb|ELY56919.1| DNA-directed RNA polymerase subunit D [Natronococcus jeotgali DSM
18795]
Length = 249
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 121/313 (38%), Gaps = 83/313 (26%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + GI AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MSEEYDVEFVERGDREARFLVRGITPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P E++ E +T+ + V
Sbjct: 61 QLALRLGLVPLTTPPE-GEFV-------EDDTVTLSIDV--------------------- 91
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
P++ Y+ S D L E ++ ++ I L GQ +E EA
Sbjct: 92 -----------EGPAT---AYSGDLVSSDSLVEPADE------NVPIIELKDGQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVED--EDAEKLVKT--------CPVNVF 301
A GK HAK YR L + +++D+ + E ++V+ P + F
Sbjct: 132 DARLERGKDHAKHQGGVAVGYRHLQRVEVVDDLPEFQEPESQIVRGVVEENGELVPTSEF 191
Query: 302 DIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPET 361
D + P K + + V + F+F +E+ G+ S E
Sbjct: 192 D--------HDLSTRHPG----------------KEIRLEDVPNAFVFHVETDGSFSVEE 227
Query: 362 LFTEAVKILEDKC 374
L T AV +E +
Sbjct: 228 LVTRAVDSIEARA 240
>gi|156936978|ref|YP_001434774.1| DNA-directed RNA polymerase subunit D [Ignicoccus hospitalis
KIN4/I]
gi|156565962|gb|ABU81367.1| DNA-directed RNA polymerase, subunit D [Ignicoccus hospitalis
KIN4/I]
Length = 283
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 130/312 (41%), Gaps = 60/312 (19%)
Query: 78 VEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRL 137
+EV+ T + G A+ NA RR + P MA++ + + N S + +EVLAHRL
Sbjct: 3 IEVLEETPTSIRLLAKGYPLAVLNAIRRAALELAPKMAVDFIAVDRNDSTLFNEVLAHRL 62
Query: 138 GLIPIIVDPRLFEY------MSENDTSNEKNTIV-------FKLHVLCERGGPRLTVKTN 184
+IP+ + L Y M E + V +L++ G ++ V +
Sbjct: 63 AMIPLRSEEALERYAPPEACMECTPEEAEADKCVVDGKPCYVRLYLDASAEGKQIIVYSK 122
Query: 185 ELKWLPNGSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPG 244
+LK S +D+ P + N P+ P++
Sbjct: 123 DLK----------------------------SEDEDVRPVYENIPVVPLIG--------D 146
Query: 245 QEIELEAHAVKGIGKTHAKWSPVATAWYR-MLPEIVLLEDVEDEDAEKLVKTCPVNVFDI 303
Q++++ A+A G G+ HAKW P + + +L I + E + D + +K F +
Sbjct: 147 QKVKVIAYARLGRGREHAKWMPATVSIVKPLLKGISVKEGLCDAECQKECAEKCKEAFVM 206
Query: 304 EDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRV--KDHFIFTIESTGALSPET 361
+D + T+ + ++ C+ E + IR V +D ++F +ES G+LS
Sbjct: 207 KD-----GKLTLKEGTTLSMVMYCIEYVCEGK---GIRPVFEEDTYLFELESDGSLSARR 258
Query: 362 LFTEAVKILEDK 373
EA K + +K
Sbjct: 259 TLVEAAKAVVEK 270
>gi|448534354|ref|ZP_21621682.1| DNA-directed RNA polymerase subunit D [Halorubrum hochstenium ATCC
700873]
gi|445704836|gb|ELZ56743.1| DNA-directed RNA polymerase subunit D [Halorubrum hochstenium ATCC
700873]
Length = 250
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 115/292 (39%), Gaps = 69/292 (23%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A+AN RR +IA++PT +I+ V N+SV+ DE++ RLGLIP+
Sbjct: 24 GLTPALANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPL----------- 72
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
T L G E+ L + ++ Y+
Sbjct: 73 -----------------------------TTPLDDFEVGDEVTLALDVEGPATA----YS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L E ++ ++ I L GQ +E EA AV GK HAK + YR
Sbjct: 100 GDIESSDPLVEVADE------NVPIIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYR 153
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA-CTLCRECLRCGE 332
L + + D + D ++ N+ R + P L E
Sbjct: 154 HLQRVTVEGDRGEFDDDE------PNIL----------RGVIETPDGEIELTDEFDNDLS 197
Query: 333 EW--EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
E K V++ V F+F IE+ G+ E L A+ +E++ + + T+++
Sbjct: 198 ERFPGKEVAVEDVPGAFVFHIETDGSFDVEELLLRAIDSIEERADELQTKVA 249
>gi|448400361|ref|ZP_21571353.1| DNA-directed RNA polymerase subunit D [Haloterrigena limicola JCM
13563]
gi|445667384|gb|ELZ20027.1| DNA-directed RNA polymerase subunit D [Haloterrigena limicola JCM
13563]
Length = 249
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 121/301 (40%), Gaps = 67/301 (22%)
Query: 72 FCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDE 131
+ VE + + F + G+ A AN RR ++A++PTMAI+ V N+SV+ DE
Sbjct: 1 MTEEYDVEFVEREDREARFLVRGVTPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDE 60
Query: 132 VLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPN 191
LA RLGL+P+ P + E+ E +T+ + V GP T + +L
Sbjct: 61 QLALRLGLVPLTT-PPVGEF-------TEDDTVTLSIDV----EGP-ATAYSGDL----- 102
Query: 192 GSELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEA 251
SS + + P N PI + D Q +E EA
Sbjct: 103 -----------------------VSSDELVQPADENIPIIELKD--------DQRLEAEA 131
Query: 252 HAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVE--DEDAEKLVKTCPVNVFDIEDIGSG 309
AV GK HAK YR L + + D+ +E ++++ IED G
Sbjct: 132 DAVLDRGKDHAKHQGGVAVGYRHLQRVEVDGDLPEFEEQESRIIRGV------IEDDGEL 185
Query: 310 KKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKI 369
+ + +K+V + V + F+F +E+ G+ + E L T A +
Sbjct: 186 VPTSEFDHDLSNRYP----------DKQVRVEDVPNAFVFHVETDGSFTVEELVTRAAET 235
Query: 370 L 370
+
Sbjct: 236 I 236
>gi|167044506|gb|ABZ09181.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG6J21]
Length = 200
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 78/186 (41%), Gaps = 50/186 (26%)
Query: 83 LTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
LT DD + LIGI ANA RRI + +P AI+ V I N+SVI DE LA LG+I
Sbjct: 7 LTSDDKKISIKLIGISLHYANALRRICLNGVPIFAIDTVDIIENSSVIPDEGLALTLGMI 66
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P+ + F D SN + +V
Sbjct: 67 PLKTELNGF------DESNSRVILVL---------------------------------- 86
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGK 259
DS + + TS E + ++P+ I I L PGQ I+LEA+A G G
Sbjct: 87 -DSEAAETTKIVTSAE------LESKDQVVKPISKQIPIVHLAPGQRIKLEAYARLGRGT 139
Query: 260 THAKWS 265
HAKW+
Sbjct: 140 EHAKWN 145
>gi|167044152|gb|ABZ08834.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG5E24]
Length = 200
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 78/186 (41%), Gaps = 50/186 (26%)
Query: 83 LTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
LT DD + LIGI ANA RRI + +P AI+ V I N+SVI DE LA LG+I
Sbjct: 7 LTSDDKKISIKLIGISLHYANALRRICLNGVPIFAIDTVDIIENSSVIPDEGLALTLGMI 66
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P+ + F D SN + +V
Sbjct: 67 PLKTELNGF------DESNSRVILVL---------------------------------- 86
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGK 259
DS + + TS E + ++P+ I I L PGQ I+LEA+A G G
Sbjct: 87 -DSEAAETTKIVTSAE------LESKDQVVKPISKQIPIVHLAPGQRIKLEAYARLGRGT 139
Query: 260 THAKWS 265
HAKW+
Sbjct: 140 EHAKWN 145
>gi|448499366|ref|ZP_21611293.1| DNA-directed RNA polymerase subunit D [Halorubrum coriense DSM
10284]
gi|445697321|gb|ELZ49386.1| DNA-directed RNA polymerase subunit D [Halorubrum coriense DSM
10284]
Length = 250
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 116/292 (39%), Gaps = 69/292 (23%)
Query: 94 GIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMS 153
G+ A AN RR +IA++PT +I+ V N+SV+ DE++ RLGL+P+
Sbjct: 24 GLTPAFANGIRRAMIADVPTFSIDTVQFVENSSVMFDEMIGLRLGLVPL----------- 72
Query: 154 ENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPSSKPRTYT 213
T L G E+ L + P++ Y+
Sbjct: 73 -----------------------------TTPLDDFEIGDEVTLALDVE-GPAT---AYS 99
Query: 214 SFSSSQDLLPEFSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYR 273
S D L E ++ ++ I L GQ +E EA AV GK HAK + YR
Sbjct: 100 GDIESSDPLVEVADE------NVPIIELKEGQRLEFEATAVLDTGKEHAKHQGGVSVGYR 153
Query: 274 MLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRA-CTLCRECLRCGE 332
L + + D + D ++ N+ R + P L E
Sbjct: 154 HLQRVSVEGDRGEFDDDE------PNIL----------RGVIETPDGDVELTDEFDNDLS 197
Query: 333 EW--EKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382
E K V++ V F+F IE+ G+ S E L A+ +E++ + + T+++
Sbjct: 198 ERFPGKEVAVEDVPGAFVFHIETDGSFSVEELLLRAIGSIEERADELQTKVA 249
>gi|15790216|ref|NP_280040.1| DNA-directed RNA polymerase II [Halobacterium sp. NRC-1]
gi|169235945|ref|YP_001689145.1| DNA-directed RNA polymerase subunit D [Halobacterium salinarum R1]
gi|13124517|sp|Q9HQJ4.1|RPOD_HALSA RecName: Full=DNA-directed RNA polymerase subunit D
gi|229564264|sp|B0R4Y2.1|RPOD_HALS3 RecName: Full=DNA-directed RNA polymerase subunit D
gi|10580674|gb|AAG19520.1| DNA-directed RNA polymerase II [Halobacterium sp. NRC-1]
gi|167727011|emb|CAP13797.1| DNA-directed RNA polymerase subunit D [Halobacterium salinarum R1]
Length = 248
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 119/317 (37%), Gaps = 89/317 (28%)
Query: 73 CNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEV 132
+F VE + + F + I A AN RR ++ ++PT++I+ V N+SV+ DE
Sbjct: 3 SQDFDVEFVDRDDREARFVVRNITPAFANGIRRAILVDVPTLSIDTVRFVENSSVMFDEQ 62
Query: 133 LAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNG 192
L RLGL+P+ E+ + E T+ + GP
Sbjct: 63 LGLRLGLVPLTT--------PEDYAAGEAVTLALDVE------GPG-------------- 94
Query: 193 SELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPMLD--ITIARLGPGQEIELE 250
T++S DL+ SN+P D I I L Q +ELE
Sbjct: 95 --------------------TAYSG--DLV---SNDPEVEAADENIPIIELKDDQRLELE 129
Query: 251 AHAVKGIGKTHAKWSPVATAWYRMLPEIVLLED---VEDEDAEKLV-------KTCPVNV 300
A AV G G+ HAK YR L + ++ D D+D + L + P +
Sbjct: 130 ADAVMGHGRDHAKHQGGVAVGYRHLQRVHVVGDSPEYADDDPQMLRGVIEEDDELVPTDD 189
Query: 301 FDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPE 360
FD T P K V I V F+F +ES G++ E
Sbjct: 190 FD--------NDLTTRYPG----------------KEVEIEDVDGAFVFHVESDGSMPVE 225
Query: 361 TLFTEAVKILEDKCERV 377
L AV L D+ + +
Sbjct: 226 ELVLRAVDTLVDRADEL 242
>gi|167044977|gb|ABZ09642.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG8G2]
Length = 214
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 78/186 (41%), Gaps = 50/186 (26%)
Query: 83 LTKDD--MEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLI 140
LT DD + L GI ANA RRI + +P AI+ V + N+SVI DE +AH LG+I
Sbjct: 22 LTSDDKKISIKLKGISLHYANALRRICLNGVPIFAIDTVDVIENSSVIPDEGIAHTLGMI 81
Query: 141 PIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLTVKTNELKWLPNGSELPLETK 200
P+ + F D SN + +V
Sbjct: 82 PLKTELNGF------DESNSRVILVL---------------------------------- 101
Query: 201 PDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAHAVKGIGK 259
DS + + TS E + ++P+ I I L PGQ I+LEA+A G G
Sbjct: 102 -DSEAAENTKIVTSAE------LESKDQVVKPISKQIPIVHLAPGQRIKLEAYARLGRGT 154
Query: 260 THAKWS 265
HAKW+
Sbjct: 155 EHAKWN 160
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,131,414,179
Number of Sequences: 23463169
Number of extensions: 260430503
Number of successful extensions: 621823
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 618541
Number of HSP's gapped (non-prelim): 1714
length of query: 382
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 238
effective length of database: 8,980,499,031
effective search space: 2137358769378
effective search space used: 2137358769378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)