Query 016813
Match_columns 382
No_of_seqs 290 out of 1384
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 5.1E-41 1.1E-45 354.6 14.2 266 1-275 224-534 (640)
2 cd05497 Bromo_Brdt_I_like Brom 100.0 3.2E-29 6.9E-34 207.8 10.6 99 2-100 7-106 (107)
3 cd05496 Bromo_WDR9_II Bromodom 100.0 8.5E-29 1.8E-33 208.6 12.3 103 2-106 8-111 (119)
4 cd05495 Bromo_cbp_like Bromodo 100.0 9.5E-29 2.1E-33 205.3 12.2 101 2-102 6-107 (108)
5 cd05505 Bromo_WSTF_like Bromod 100.0 9.7E-29 2.1E-33 201.3 10.5 95 1-97 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 100.0 2E-28 4.4E-33 200.4 10.9 98 1-98 2-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 100.0 2.3E-28 5.1E-33 199.4 10.5 96 1-98 2-97 (97)
8 cd05498 Bromo_Brdt_II_like Bro 100.0 5.9E-28 1.3E-32 198.8 11.1 98 1-98 2-102 (102)
9 cd05501 Bromo_SP100C_like Brom 100.0 9.3E-28 2E-32 196.1 11.8 97 1-102 4-100 (102)
10 cd05499 Bromo_BDF1_2_II Bromod 99.9 8.6E-28 1.9E-32 197.8 10.8 98 1-98 2-102 (102)
11 cd05504 Bromo_Acf1_like Bromod 99.9 1.6E-27 3.4E-32 200.2 10.9 99 1-101 14-112 (115)
12 cd05500 Bromo_BDF1_2_I Bromodo 99.9 3.6E-27 7.8E-32 194.4 11.2 96 2-97 7-102 (103)
13 cd05507 Bromo_brd8_like Bromod 99.9 5.5E-27 1.2E-31 193.6 11.2 96 2-99 6-101 (104)
14 cd05502 Bromo_tif1_like Bromod 99.9 9.4E-27 2E-31 193.9 11.7 99 1-102 6-107 (109)
15 cd05509 Bromo_gcn5_like Bromod 99.9 1.7E-26 3.7E-31 189.7 11.0 97 2-100 4-100 (101)
16 cd05510 Bromo_SPT7_like Bromod 99.9 1.8E-26 3.9E-31 192.6 10.7 98 2-101 10-109 (112)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 3.3E-26 7.2E-31 186.9 10.9 91 3-96 7-97 (99)
18 cd05513 Bromo_brd7_like Bromod 99.9 3.9E-26 8.5E-31 186.2 10.3 92 2-95 4-95 (98)
19 cd05511 Bromo_TFIID Bromodomai 99.9 1.6E-25 3.5E-30 187.2 12.3 103 3-107 4-106 (112)
20 cd05512 Bromo_brd1_like Bromod 99.9 1.4E-25 3.1E-30 183.1 10.3 90 3-94 5-94 (98)
21 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.5E-25 3.3E-30 185.8 10.4 97 2-100 4-106 (107)
22 cd05528 Bromo_AAA Bromodomain; 99.9 2.9E-25 6.3E-30 185.4 11.1 97 3-101 7-107 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 1.1E-24 2.5E-29 179.5 10.4 95 2-98 3-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 1.6E-24 3.4E-29 179.2 10.4 97 1-99 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 1.7E-24 3.7E-29 181.2 10.1 100 1-102 4-109 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 5.8E-24 1.2E-28 181.8 11.7 97 2-99 27-126 (128)
27 cd05520 Bromo_polybromo_III Br 99.9 6.9E-24 1.5E-28 174.7 10.1 92 4-97 5-102 (103)
28 cd05517 Bromo_polybromo_II Bro 99.9 7.4E-24 1.6E-28 174.5 9.9 93 2-96 3-101 (103)
29 cd05518 Bromo_polybromo_IV Bro 99.9 1.1E-23 2.4E-28 173.4 9.9 94 2-97 3-102 (103)
30 smart00297 BROMO bromo domain. 99.9 2E-23 4.3E-28 172.6 10.8 97 2-100 10-106 (107)
31 cd05525 Bromo_ASH1 Bromodomain 99.9 3.6E-23 7.8E-28 171.2 10.8 94 2-97 5-104 (106)
32 PF00439 Bromodomain: Bromodom 99.9 8.3E-23 1.8E-27 161.6 9.6 84 4-89 1-84 (84)
33 cd04369 Bromodomain Bromodomai 99.9 1.9E-22 4.2E-27 162.6 9.9 95 2-98 3-99 (99)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.9 3.3E-22 7.1E-27 165.1 9.8 93 3-97 5-103 (104)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 7.8E-22 1.7E-26 163.1 10.2 94 2-99 4-103 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.9 2.2E-21 4.7E-26 160.7 11.9 97 5-101 6-106 (109)
37 KOG1245 Chromatin remodeling c 99.7 2.7E-18 5.8E-23 192.8 7.8 95 4-101 1306-1400(1404)
38 cd05526 Bromo_polybromo_VI Bro 99.7 2.1E-17 4.6E-22 136.7 10.5 95 3-101 7-107 (110)
39 COG5076 Transcription factor i 99.7 2.8E-17 6E-22 164.6 9.0 88 16-105 165-252 (371)
40 cd05494 Bromodomain_1 Bromodom 99.5 8.9E-15 1.9E-19 122.6 2.9 79 1-79 5-90 (114)
41 KOG1472 Histone acetyltransfer 99.5 3.7E-14 8E-19 148.8 5.8 98 4-103 611-708 (720)
42 cd05491 Bromo_TBP7_like Bromod 99.2 2.3E-11 4.9E-16 101.2 4.7 41 39-79 62-102 (119)
43 KOG0955 PHD finger protein BR1 99.1 4.6E-11 1E-15 130.6 6.9 103 2-106 568-670 (1051)
44 KOG0008 Transcription initiati 99.0 4.6E-10 1E-14 122.7 6.3 95 5-101 1388-1482(1563)
45 KOG1474 Transcription initiati 98.8 1E-09 2.2E-14 117.1 0.1 93 9-101 2-94 (640)
46 KOG0008 Transcription initiati 98.8 1.9E-08 4.1E-13 110.4 8.6 104 4-109 1266-1369(1563)
47 KOG1827 Chromatin remodeling c 98.7 1.9E-08 4.2E-13 104.7 7.7 95 3-99 56-156 (629)
48 KOG0386 Chromatin remodeling c 98.7 2.2E-08 4.7E-13 107.7 6.8 100 2-103 1027-1132(1157)
49 KOG1472 Histone acetyltransfer 98.7 1.5E-08 3.2E-13 107.2 4.8 67 14-82 301-367 (720)
50 KOG1828 IRF-2-binding protein 98.3 1.7E-07 3.8E-12 91.7 0.1 94 4-99 24-117 (418)
51 KOG1828 IRF-2-binding protein 98.0 4.4E-06 9.6E-11 82.0 3.2 80 10-92 219-298 (418)
52 COG5076 Transcription factor i 97.0 0.00018 3.9E-09 72.3 0.2 88 12-101 276-363 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 96.8 0.0018 3.9E-08 55.3 4.9 67 40-106 58-124 (131)
54 KOG0644 Uncharacterized conser 94.7 0.028 6E-07 60.6 3.9 64 34-97 1046-1109(1113)
55 KOG0732 AAA+-type ATPase conta 89.9 0.27 5.8E-06 55.2 3.5 65 16-80 532-601 (1080)
56 PHA03308 transcriptional regul 87.3 0.48 1E-05 50.7 3.1 8 210-217 937-944 (1463)
57 KOG2130 Phosphatidylserine-spe 86.8 0.46 9.9E-06 46.4 2.5 12 57-68 62-73 (407)
58 PF05110 AF-4: AF-4 proto-onco 86.5 0.87 1.9E-05 52.2 4.9 20 47-66 47-68 (1191)
59 PHA03308 transcriptional regul 85.2 0.68 1.5E-05 49.6 2.9 9 219-227 1017-1025(1463)
60 KOG2140 Uncharacterized conser 79.2 1.3 2.8E-05 46.2 2.3 14 219-232 481-494 (739)
61 KOG2140 Uncharacterized conser 76.6 2 4.3E-05 44.9 2.7 14 251-264 538-551 (739)
62 PF05110 AF-4: AF-4 proto-onco 74.7 3 6.5E-05 48.0 3.8 11 357-367 446-456 (1191)
63 KOG0644 Uncharacterized conser 70.6 1.1 2.4E-05 48.9 -0.8 78 19-98 85-194 (1113)
64 KOG2130 Phosphatidylserine-spe 69.7 3.2 7E-05 40.7 2.3 11 312-322 326-336 (407)
65 PF14372 DUF4413: Domain of un 67.6 26 0.00056 28.4 7.0 52 53-104 3-54 (101)
66 PF07218 RAP1: Rhoptry-associa 57.7 14 0.00031 38.9 4.4 26 245-270 39-64 (782)
67 PF11116 DUF2624: Protein of u 56.0 14 0.0003 29.4 3.2 67 201-267 13-83 (85)
68 KOG1827 Chromatin remodeling c 52.6 1.8 4E-05 46.2 -2.9 75 18-94 214-288 (629)
69 TIGR02606 antidote_CC2985 puta 52.3 22 0.00048 26.9 3.7 27 45-71 12-38 (69)
70 KOG1869 Splicing coactivator S 51.3 21 0.00045 36.0 4.3 23 319-341 369-391 (425)
71 KOG4795 Protein associated wit 35.2 33 0.00072 32.4 2.7 10 367-376 254-263 (264)
72 cd05494 Bromodomain_1 Bromodom 34.3 33 0.00073 28.5 2.4 70 195-268 38-107 (114)
73 PF07218 RAP1: Rhoptry-associa 32.6 89 0.0019 33.3 5.5 15 87-101 5-19 (782)
74 PF03693 RHH_2: Uncharacterise 32.5 60 0.0013 25.3 3.4 26 45-70 15-40 (80)
75 PF04472 DUF552: Protein of un 32.3 1.2E+02 0.0026 22.8 5.1 38 221-266 10-47 (73)
76 PRK08898 coproporphyrinogen II 29.4 1E+02 0.0022 31.3 5.4 45 218-262 87-131 (394)
77 PF11458 Mistic: Membrane-inte 28.4 2.1E+02 0.0046 22.2 5.6 56 203-268 3-58 (84)
78 PF10491 Nrf1_DNA-bind: NLS-bi 26.9 58 0.0012 30.2 2.8 20 60-79 185-204 (214)
79 PF10047 DUF2281: Protein of u 26.1 68 0.0015 23.9 2.7 20 248-267 9-28 (66)
80 PRK09057 coproporphyrinogen II 25.2 1.3E+02 0.0028 30.2 5.4 45 218-262 69-113 (380)
81 PHA03325 nuclear-egress-membra 25.1 1.1E+02 0.0023 30.9 4.4 11 17-27 67-77 (418)
82 PF12411 Choline_sulf_C: Choli 23.6 1.5E+02 0.0032 21.5 3.8 41 3-50 9-51 (54)
83 KOG2985 Uncharacterized conser 23.0 54 0.0012 31.3 1.9 16 200-215 90-105 (306)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=5.1e-41 Score=354.60 Aligned_cols=266 Identities=38% Similarity=0.534 Sum_probs=179.6
Q ss_pred ChHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 1 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 1 mk~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
|++|..||.+||+|+++|+|+.|||++.||+||||+||+|||||+|||+||.+|.|.++.+|++||||||.|||+||++|
T Consensus 224 lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g 303 (640)
T KOG1474|consen 224 LKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEG 303 (640)
T ss_pred HHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCC----C------CC--------c----CccCcchhhHHHhhh-c
Q 016813 81 HEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDD----E------FP--------A----HSWNFHEVKEKEVVK-Q 137 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~~~~~~~~~~~~~~~~~~----e------~~--------~----~~~~~~~~~~r~~kk-~ 137 (382)
++||.||..|+++|+.+|..+...+............ + .. . ..+............ .
T Consensus 304 ~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 383 (640)
T KOG1474|consen 304 SDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPSSELMSEEERKKLL 383 (640)
T ss_pred CHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCcccccccHHhhhhhH
Confidence 9999999999999999999877665432210000000 0 00 0 000000000000000 0
Q ss_pred CC--CCCCCchhhhhh--cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 016813 138 QP--LPKPEPMQRVLA--TGSNHNPKPNPPPAAAAPQMPVRTPSPVRVTPA--VKPLKQPKPKAKDPNKREMSMEEKHKL 211 (382)
Q Consensus 138 ~~--~~~~~~q~~~~~--~~~~s~~~~~~~~~~~~~q~~~~~~s~~~~~~~--~k~~k~~k~~~~~~~~r~mT~eEK~~L 211 (382)
.. ......+..+.. ......+ +... ........+.... .-..+..+..+...+++.||..|+..|
T Consensus 384 ~~l~~~~~~~~~~l~~~~~~~~~~~-----~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l 454 (640)
T KOG1474|consen 384 AELKLLLKDVPPQLIALLQRPVSKP-----PRKI----EEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKL 454 (640)
T ss_pred hhhhcchhhhhHHHHhhhhccccCc-----cccc----cccccccccccchhhhhhhhhccccccccccccccccccccc
Confidence 00 000000000000 0000000 0000 0000000000000 000122222334456899999999999
Q ss_pred HHHhcC-CChhhHHHHHHHH--HhhcCCCCCCCCeEEEeCcCCC-------------HHHHHHHHHHHHHHHHHHHHHHH
Q 016813 212 GIGLQS-LPQEKMEQVIHIL--KKRNGNLRQDEDEIELDIEALD-------------TETLWELDRFVTNYKKMVSKIKR 275 (382)
Q Consensus 212 ~~~I~~-L~~e~l~~VI~II--~~~~p~~~~~~deiEiDid~L~-------------~~TL~eL~~~V~~~~k~~~~~kr 275 (382)
...+.. +++..+..+++|+ ..+.+.+..+++++++|++.++ .+|+|++.+|+..+...+.+...
T Consensus 455 ~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~ 534 (640)
T KOG1474|consen 455 KELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPSSNPLEIETIRETLKLSTERELELSKASS 534 (640)
T ss_pred hhhccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCCcccchhhhhhccccchhhHHHHHHHHhh
Confidence 999999 5999999999999 5577788888899999999999 99999999999999877665544
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=3.2e-29 Score=207.80 Aligned_cols=99 Identities=35% Similarity=0.568 Sum_probs=94.4
Q ss_pred hHH-HHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 2 KNC-GQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 2 k~c-~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
+.| ..||..|++++.+|+|..|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+++
T Consensus 7 ~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 86 (107)
T cd05497 7 QYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPG 86 (107)
T ss_pred HHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 455 5779999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 016813 81 HEVHIIAEQFLARFEELFRP 100 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~ 100 (382)
+.++.+|..|++.|++.+.+
T Consensus 87 s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 87 DDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999998864
No 3
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=8.5e-29 Score=208.55 Aligned_cols=103 Identities=37% Similarity=0.604 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC-C
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK-D 80 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~-~ 80 (382)
++|..||..|++++.+|+|..|||+.. +|+|+++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++ +
T Consensus 8 ~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~ 85 (119)
T cd05496 8 KQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKR 85 (119)
T ss_pred HHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 689999999999999999999999976 9999999999999999999999999999999999999999999999985 9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016813 81 HEVHIIAEQFLARFEELFRPINEKLM 106 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~~~~~~~ 106 (382)
+.||.+|..|++.|+++|..+...+.
T Consensus 86 s~i~~~a~~L~~~F~~~~~~l~~~~~ 111 (119)
T cd05496 86 SRIYSMTLRLSALFEEHIKKIISDWK 111 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987764
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=9.5e-29 Score=205.34 Aligned_cols=101 Identities=36% Similarity=0.564 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHhC-CCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 2 KNCGQILTKLMKH-KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 2 k~c~~il~~L~~~-~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
++|..+|.+|+++ +.+|+|..||++..+++|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+++
T Consensus 6 ~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 85 (108)
T cd05495 6 QALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKT 85 (108)
T ss_pred HHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 6899999999999 999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 016813 81 HEVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~~~ 102 (382)
+.++.+|.+|++.|++.++.+.
T Consensus 86 s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 86 SRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=9.7e-29 Score=201.29 Aligned_cols=95 Identities=32% Similarity=0.504 Sum_probs=92.0
Q ss_pred ChHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 1 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 1 mk~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
+++|.+||..|++++.+|+|..||+... +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4789999999999999999999999876 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 016813 81 HEVHIIAEQFLARFEEL 97 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~ 97 (382)
+.|+.+|..|++.|..+
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2e-28 Score=200.42 Aligned_cols=98 Identities=62% Similarity=1.055 Sum_probs=95.9
Q ss_pred ChHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 1 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 1 mk~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
|++|.+||..|++++.+++|..||++...++|+|+++|++||||+||++||++|.|.++.+|..||+|||.||++||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 68999999999999999999999999877899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 016813 81 HEVHIIAEQFLARFEELF 98 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~ 98 (382)
+.++.+|..|++.|+++|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.3e-28 Score=199.35 Aligned_cols=96 Identities=34% Similarity=0.569 Sum_probs=93.7
Q ss_pred ChHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 1 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 1 mk~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
|.+|..||..|++++.+++|..||++.. +|+|+++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5799999999999999999999999986 89999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 016813 81 HEVHIIAEQFLARFEELF 98 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~ 98 (382)
+.++.+|..|++.|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=5.9e-28 Score=198.79 Aligned_cols=98 Identities=46% Similarity=0.786 Sum_probs=95.3
Q ss_pred ChHHHHHHHHHHhC---CCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 016813 1 MKNCGQILTKLMKH---KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 77 (382)
Q Consensus 1 mk~c~~il~~L~~~---~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN 77 (382)
+++|.+||..|+++ +.+++|..||++...++|+|+++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57999999999999 789999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 016813 78 PKDHEVHIIAEQFLARFEELF 98 (382)
Q Consensus 78 ~~~s~v~~~A~~L~~~fe~~~ 98 (382)
++++.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 9
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=9.3e-28 Score=196.14 Aligned_cols=97 Identities=27% Similarity=0.436 Sum_probs=91.3
Q ss_pred ChHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 1 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 1 mk~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
|++|+.||..|++++.+++|..+ +. ++|||+++|++||||+||++||.+|+|.++.+|.+||+|||.||++||+++
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~ 79 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD 79 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999763 33 499999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 016813 81 HEVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~~~ 102 (382)
.++.+|..|++.|+++|+.++
T Consensus 80 -~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 80 -DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 10
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=8.6e-28 Score=197.82 Aligned_cols=98 Identities=39% Similarity=0.738 Sum_probs=94.0
Q ss_pred ChHHHHHHHHHHhC---CCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 016813 1 MKNCGQILTKLMKH---KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 77 (382)
Q Consensus 1 mk~c~~il~~L~~~---~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN 77 (382)
+++|.+||..|+++ +.+|+|..|||+..+++|+|+++|++||||+||++||++|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 58999999999995 459999999999977799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 016813 78 PKDHEVHIIAEQFLARFEELF 98 (382)
Q Consensus 78 ~~~s~v~~~A~~L~~~fe~~~ 98 (382)
++++.++.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999886
No 11
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.6e-27 Score=200.18 Aligned_cols=99 Identities=36% Similarity=0.627 Sum_probs=95.4
Q ss_pred ChHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 1 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 1 mk~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
+..|.+||..|+.++.+|+|..||+... +|+||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+++
T Consensus 14 ~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~ 91 (115)
T cd05504 14 LSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEH 91 (115)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 3689999999999999999999999875 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 016813 81 HEVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~~ 101 (382)
+.++.+|..|++.|++.++.+
T Consensus 92 s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 92 TSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999765
No 12
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3.6e-27 Score=194.44 Aligned_cols=96 Identities=36% Similarity=0.536 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
++|.+||..|++++.+++|..|||+..+++|+|+++|++||||+||++||.+|.|.++.+|..||+|||.||+.||++++
T Consensus 7 ~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 86 (103)
T cd05500 7 KFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEH 86 (103)
T ss_pred HHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 78999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEEL 97 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~ 97 (382)
.++.+|..|++.|++.
T Consensus 87 ~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 87 PVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999975
No 13
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=5.5e-27 Score=193.60 Aligned_cols=96 Identities=29% Similarity=0.448 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|..|+..|+.|+.+++|..||+... +|+|+++|++||||+||++||++|.|.++.+|.+||+|||.||+.||++++
T Consensus 6 ~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 83 (104)
T cd05507 6 KAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDH 83 (104)
T ss_pred HHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 579999999999999999999999865 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEELFR 99 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~ 99 (382)
.++.+|..|++.|...+.
T Consensus 84 ~v~~~A~~l~~~~~~~~~ 101 (104)
T cd05507 84 DVYLMAVEMQREVMSQIQ 101 (104)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999887764
No 14
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=9.4e-27 Score=193.88 Aligned_cols=99 Identities=38% Similarity=0.678 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHhHhhhC
Q 016813 1 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK---NLYDSPASFAADVRLTFNNAMTYN 77 (382)
Q Consensus 1 mk~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~---~~Y~s~~eF~~Dv~Lif~Na~~yN 77 (382)
.++|.+||..|++|+.+++|..||++ . +|+|+++|++||||+||++||++ |.|.++.+|.+||+|||.||+.||
T Consensus 6 ~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (109)
T cd05502 6 QRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 37899999999999999999999998 3 89999999999999999999999 699999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 016813 78 PKDHEVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 78 ~~~s~v~~~A~~L~~~fe~~~~~~~ 102 (382)
++++.++.+|..|++.|+++++.++
T Consensus 83 ~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 83 EEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998764
No 15
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.7e-26 Score=189.74 Aligned_cols=97 Identities=35% Similarity=0.544 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
++|..||..|++|+.+++|..||++.. +|+|+++|++||||+||++||.+|.|.++.+|..||+|||.||+.||++++
T Consensus 4 ~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 81 (101)
T cd05509 4 TQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDT 81 (101)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 589999999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEELFRP 100 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~ 100 (382)
.++.+|..|++.|++++++
T Consensus 82 ~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 82 EYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 16
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.8e-26 Score=192.59 Aligned_cols=98 Identities=33% Similarity=0.483 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhC-CCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 2 KNCGQILTKLMKH-KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 2 k~c~~il~~L~~~-~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
++|..||..|+++ +.+++|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||+++
T Consensus 10 ~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~ 87 (112)
T cd05510 10 ESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDP 87 (112)
T ss_pred HHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5799999999999 89999999999986 99999999999999999999999999999999999999999999999986
Q ss_pred C-HHHHHHHHHHHHHHHHHHHH
Q 016813 81 H-EVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 81 s-~v~~~A~~L~~~fe~~~~~~ 101 (382)
+ .++.+|..|++.|+.++..+
T Consensus 88 s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 88 SHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CHHHHHHHHHHHHHHHHHHHHC
Confidence 5 67899999999999988765
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.3e-26 Score=186.94 Aligned_cols=91 Identities=29% Similarity=0.430 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCH
Q 016813 3 NCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHE 82 (382)
Q Consensus 3 ~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~ 82 (382)
.+..++..|+ |+.+|+|..||++.. +|||+++|++||||+||++||++|.|.++++|.+||+|||.||+.||+++|.
T Consensus 7 ~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~ 83 (99)
T cd05508 7 LLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHK 83 (99)
T ss_pred HHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3556677777 999999999999976 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 016813 83 VHIIAEQFLARFEE 96 (382)
Q Consensus 83 v~~~A~~L~~~fe~ 96 (382)
++.+|..|.+.|+.
T Consensus 84 i~~~A~~l~~~~~~ 97 (99)
T cd05508 84 LTQAAKAIVKICEQ 97 (99)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 18
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.9e-26 Score=186.16 Aligned_cols=92 Identities=33% Similarity=0.410 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|.+||..|++++.+++|..||+... +|+|+++|++||||+||++||+++.|.++.+|.+||+|||.||++||++++
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 81 (98)
T cd05513 4 KALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDT 81 (98)
T ss_pred HHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 578999999999999999999999876 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFE 95 (382)
Q Consensus 82 ~v~~~A~~L~~~fe 95 (382)
.+|++|.+|...-.
T Consensus 82 ~~~~~A~~L~~~~~ 95 (98)
T cd05513 82 IYYKAAKKLLHSGM 95 (98)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999976543
No 19
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.6e-25 Score=187.19 Aligned_cols=103 Identities=36% Similarity=0.535 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCH
Q 016813 3 NCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHE 82 (382)
Q Consensus 3 ~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~ 82 (382)
...+|+.+|++++.+++|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||++++.
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 36789999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 016813 83 VHIIAEQFLARFEELFRPINEKLMQ 107 (382)
Q Consensus 83 v~~~A~~L~~~fe~~~~~~~~~~~~ 107 (382)
++.+|..|.+.|+..+..+...+..
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~~~ 106 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKLTQ 106 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999887753
No 20
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.4e-25 Score=183.08 Aligned_cols=90 Identities=33% Similarity=0.493 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCH
Q 016813 3 NCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHE 82 (382)
Q Consensus 3 ~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~ 82 (382)
.|..+|.+|+.++.+|+|..||+... +|+|+++|++||||+||++||.+|.|.++.+|..||+|||.||+.||++++.
T Consensus 5 ~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05512 5 LLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTI 82 (98)
T ss_pred HHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 58899999999999999999999886 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 016813 83 VHIIAEQFLARF 94 (382)
Q Consensus 83 v~~~A~~L~~~f 94 (382)
+|++|.+|++.-
T Consensus 83 ~~~~A~~l~~~~ 94 (98)
T cd05512 83 FYRAAVRLRDQG 94 (98)
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
No 21
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.5e-25 Score=185.84 Aligned_cols=97 Identities=23% Similarity=0.339 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
+.|..||..|++++. +++|.+||+... +|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 4 KKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999987 899999998876 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEELFRP 100 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~~~~ 100 (382)
||++|+.+|.+|..|++.|++.++.
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998864
No 22
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.92 E-value=2.9e-25 Score=185.41 Aligned_cols=97 Identities=31% Similarity=0.479 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC--
Q 016813 3 NCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD-- 80 (382)
Q Consensus 3 ~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~-- 80 (382)
.|..|+.+|+.++.+|+|.+||+... +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+++
T Consensus 7 ~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 84 (112)
T cd05528 7 FLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDP 84 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 57899999999999999999999987 99999999999999999999999999999999999999999999999994
Q ss_pred --CHHHHHHHHHHHHHHHHHHHH
Q 016813 81 --HEVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 81 --s~v~~~A~~L~~~fe~~~~~~ 101 (382)
+.++.+|..|++.|..++...
T Consensus 85 ~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 85 ADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred cccHHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999988754
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.1e-24 Score=179.52 Aligned_cols=95 Identities=27% Similarity=0.383 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHhCC------CCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
+.|.+|+..|+.++ .+++|..|++... +|+||++|++||||+||++||++|.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 3 AAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANART 80 (103)
T ss_pred HHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999555 4899999988876 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEELF 98 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~~ 98 (382)
||++++.++.+|..|++.|+.+|
T Consensus 81 yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 81 YNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999875
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1.6e-24 Score=179.24 Aligned_cols=97 Identities=27% Similarity=0.376 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHh
Q 016813 1 MKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAM 74 (382)
Q Consensus 1 mk~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~ 74 (382)
+++|..|+..|+.++. +++|..||+... +|+||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 3689999999998654 799999998876 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 016813 75 TYNPKDHEVHIIAEQFLARFEELFR 99 (382)
Q Consensus 75 ~yN~~~s~v~~~A~~L~~~fe~~~~ 99 (382)
+||++++.++.+|..|++.|.+.++
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988754
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1.7e-24 Score=181.22 Aligned_cols=100 Identities=24% Similarity=0.336 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHh
Q 016813 1 MKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAM 74 (382)
Q Consensus 1 mk~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~ 74 (382)
+++|.+|+..|++++. +.+|..+++... +|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 81 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAK 81 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHH
Confidence 3689999999997654 578999877655 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 016813 75 TYNPKDHEVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 75 ~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 102 (382)
+||++++.+|.+|..|++.|++.++.+.
T Consensus 82 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 82 AYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999987664
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.8e-24 Score=181.83 Aligned_cols=97 Identities=29% Similarity=0.454 Sum_probs=91.9
Q ss_pred hHHHHHHHHHH---hCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCC
Q 016813 2 KNCGQILTKLM---KHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNP 78 (382)
Q Consensus 2 k~c~~il~~L~---~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~ 78 (382)
.+|..+|.+|+ .++.+++|..||+... .+|+|+++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 27 ~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~ 105 (128)
T cd05529 27 ERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNE 105 (128)
T ss_pred HHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46888999999 8999999999999983 4999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 016813 79 KDHEVHIIAEQFLARFEELFR 99 (382)
Q Consensus 79 ~~s~v~~~A~~L~~~fe~~~~ 99 (382)
+++.++.+|..|++.|..++.
T Consensus 106 ~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 106 PNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 27
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=6.9e-24 Score=174.68 Aligned_cols=92 Identities=26% Similarity=0.378 Sum_probs=85.1
Q ss_pred HHHHHHHHHhCC------CCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 016813 4 CGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 77 (382)
Q Consensus 4 c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN 77 (382)
+..|+..|+.++ .+++|.+||+... +|+||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 566777777765 4899999998876 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 016813 78 PKDHEVHIIAEQFLARFEEL 97 (382)
Q Consensus 78 ~~~s~v~~~A~~L~~~fe~~ 97 (382)
++++.++.+|..|++.|++.
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 28
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=7.4e-24 Score=174.52 Aligned_cols=93 Identities=27% Similarity=0.383 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
+.|.+|+..|+.+.. +++|..+++... +|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 3 QILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred HHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 579999999998765 699999988877 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEE 96 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~ 96 (382)
||++++.++.+|..|++.|+.
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 29
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=1.1e-23 Score=173.42 Aligned_cols=94 Identities=24% Similarity=0.378 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHhCC------CCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
|+|..|+..|...+ .+.+|..+|+... +||||++|++||||+||+.||.+|.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57888888888764 4889999998877 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEEL 97 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~ 97 (382)
||++++.++.+|..|++.|++.
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998763
No 30
>smart00297 BROMO bromo domain.
Probab=99.90 E-value=2e-23 Score=172.61 Aligned_cols=97 Identities=45% Similarity=0.628 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|..|+..+.+++.+++|..||+... +|+|+++|++||||++|++||++|.|.++.+|.+||++||.||+.||++++
T Consensus 10 ~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s 87 (107)
T smart00297 10 SLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDS 87 (107)
T ss_pred HHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 468889999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEELFRP 100 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~ 100 (382)
.++.+|..|.+.|+..|+.
T Consensus 88 ~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 88 EVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999864
No 31
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.6e-23 Score=171.17 Aligned_cols=94 Identities=20% Similarity=0.323 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
+.|..|+..|...+. +++|.++++... +|+||++|++||||+||++||.+|.|.++.+|..||.|||.||+.
T Consensus 5 ~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 5 QVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 468888888888665 699999988776 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEEL 97 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~ 97 (382)
||++++.++.+|..|++.|+..
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999863
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.88 E-value=8.3e-23 Score=161.59 Aligned_cols=84 Identities=50% Similarity=0.805 Sum_probs=79.6
Q ss_pred HHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHH
Q 016813 4 CGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEV 83 (382)
Q Consensus 4 c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v 83 (382)
|.+||..|++++.+++|..||+... +|+|+++|++||||++|+.||++|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 9999999999999999999997776 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 016813 84 HIIAEQ 89 (382)
Q Consensus 84 ~~~A~~ 89 (382)
+.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.88 E-value=1.9e-22 Score=162.65 Aligned_cols=95 Identities=43% Similarity=0.597 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHhC--CCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC
Q 016813 2 KNCGQILTKLMKH--KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK 79 (382)
Q Consensus 2 k~c~~il~~L~~~--~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~ 79 (382)
..|..++..|+.+ +.+++|..||+... +|+|+++|++||||++|+.||.+|.|.++.+|.+||++||.||+.||+.
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~ 80 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGP 80 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5799999999999 99999999999966 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 016813 80 DHEVHIIAEQFLARFEELF 98 (382)
Q Consensus 80 ~s~v~~~A~~L~~~fe~~~ 98 (382)
++.++.+|..|...|++.|
T Consensus 81 ~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 81 GSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998764
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.3e-22 Score=165.08 Aligned_cols=93 Identities=30% Similarity=0.372 Sum_probs=84.1
Q ss_pred HHHHHHHHHHh------CCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 016813 3 NCGQILTKLMK------HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 76 (382)
Q Consensus 3 ~c~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~y 76 (382)
+...|+..|++ ++.+++|..+++... +|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+.|
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556666665 345899999998876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 016813 77 NPKDHEVHIIAEQFLARFEEL 97 (382)
Q Consensus 77 N~~~s~v~~~A~~L~~~fe~~ 97 (382)
|++++.++.+|..|++.|+.+
T Consensus 83 n~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=7.8e-22 Score=163.12 Aligned_cols=94 Identities=29% Similarity=0.337 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
++|..|+..|+..+. +.+|..+++... +|+||++|++||||+||++||.+ |.++.+|..||+|||.||+.
T Consensus 4 ~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 4 KKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 579999999998775 468988777665 99999999999999999999998 99999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEELFR 99 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~~~ 99 (382)
||++++.++.+|..|++.|..++.
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998763
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=2.2e-21 Score=160.73 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=84.6
Q ss_pred HHHHHHHHh-CCCCccccCCCCc---cccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 5 GQILTKLMK-HKLGYIFNSPVDV---VGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 5 ~~il~~L~~-~~~a~~F~~PVd~---~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
..++..+.. -+..++|..||.+ ...++|+|+++|++||||+||++||++|.|+++.+|.+||+|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 345566666 5668999999974 334599999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 016813 81 HEVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~~ 101 (382)
+.++.+|..|.+....-+.++
T Consensus 86 s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 86 SEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988777666554
No 37
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.73 E-value=2.7e-18 Score=192.79 Aligned_cols=95 Identities=42% Similarity=0.713 Sum_probs=92.4
Q ss_pred HHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHH
Q 016813 4 CGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEV 83 (382)
Q Consensus 4 c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v 83 (382)
|..||..|+.|+.+|||++||++.. +|+||+||++||||.||+.||..|.|.++.+|..||+|||.||.+||.+ +.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 8999999999999999999999998 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016813 84 HIIAEQFLARFEELFRPI 101 (382)
Q Consensus 84 ~~~A~~L~~~fe~~~~~~ 101 (382)
++.+..|..+|+++|+..
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988654
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.73 E-value=2.1e-17 Score=136.66 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 016813 3 NCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 76 (382)
Q Consensus 3 ~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~y 76 (382)
....|+..+++|.. +.+|.+.+. . .++|+.+|++||||++|++||.+|.|.++++|..||.+||.||++|
T Consensus 7 ~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~--~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 7 LLATLFVSVMNHQDEEGRCYSDSLAELPE--L--AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHHHHHhccCCCCCCchHHHHHCCC--c--ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 46778889998874 788887655 2 4778899999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 016813 77 NPKDHEVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 77 N~~~s~v~~~A~~L~~~fe~~~~~~ 101 (382)
|.+|+.+|.+|..|+.+|......+
T Consensus 83 N~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 83 SRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877654
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.70 E-value=2.8e-17 Score=164.63 Aligned_cols=88 Identities=36% Similarity=0.533 Sum_probs=82.2
Q ss_pred CCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHH
Q 016813 16 LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFE 95 (382)
Q Consensus 16 ~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe 95 (382)
..++|..+|+... +|+||.+|+.||||+||++||.++.|.++++|..|+.|||.||.+||++++.|+.+|..|++.|.
T Consensus 165 ~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~ 242 (371)
T COG5076 165 LSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFL 242 (371)
T ss_pred cccccccCCcccc--CCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHH
Confidence 4788888887776 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 016813 96 ELFRPINEKL 105 (382)
Q Consensus 96 ~~~~~~~~~~ 105 (382)
.++..+....
T Consensus 243 ~~i~~~~~~~ 252 (371)
T COG5076 243 KLIEEIPEEM 252 (371)
T ss_pred HHHHhccccc
Confidence 9998776543
No 40
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.49 E-value=8.9e-15 Score=122.58 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcC-------CCCCHHHHHHHHHHHHHhH
Q 016813 1 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKN-------LYDSPASFAADVRLTFNNA 73 (382)
Q Consensus 1 mk~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~-------~Y~s~~eF~~Dv~Lif~Na 73 (382)
+..|..+|..++.++.+|+|..||++...++|+|+++||+||||+||+++|.++ .|..-..+.+++..+|.||
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccccc
Confidence 356778888888888999999999998888999999999999999999999997 4555556777778888888
Q ss_pred hhhCCC
Q 016813 74 MTYNPK 79 (382)
Q Consensus 74 ~~yN~~ 79 (382)
..+|.-
T Consensus 85 ~~~~~~ 90 (114)
T cd05494 85 SPSNIY 90 (114)
T ss_pred Cccccc
Confidence 777653
No 41
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.47 E-value=3.7e-14 Score=148.82 Aligned_cols=98 Identities=33% Similarity=0.452 Sum_probs=92.7
Q ss_pred HHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHH
Q 016813 4 CGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEV 83 (382)
Q Consensus 4 c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v 83 (382)
.+.+|..|..|..+|||.+||+... +||||.+|++||||.||+.+|.+++|..+..|.+|+.+||.||+.||+.++..
T Consensus 611 ~~~il~~l~~h~~awPf~~Pv~~~e--~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y 688 (720)
T KOG1472|consen 611 IQNILDQLQNHGDAWPFLKPVNKKE--VPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQY 688 (720)
T ss_pred HHhHHhhhhcCCccCCccCcccccc--CCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchh
Confidence 5678999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016813 84 HIIAEQFLARFEELFRPINE 103 (382)
Q Consensus 84 ~~~A~~L~~~fe~~~~~~~~ 103 (382)
++.|..|...|.........
T Consensus 689 ~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 689 YKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred eecccchhhhhcchhhhhhh
Confidence 99999999999888765543
No 42
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.17 E-value=2.3e-11 Score=101.23 Aligned_cols=41 Identities=27% Similarity=0.462 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC
Q 016813 39 KNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK 79 (382)
Q Consensus 39 k~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~ 79 (382)
-.||||+||++||.+|.|.++.+|++||+|||.||++||.+
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~ 102 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDR 102 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCH
Confidence 47999999999999999999999999999999999999976
No 43
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.15 E-value=4.6e-11 Score=130.57 Aligned_cols=103 Identities=35% Similarity=0.421 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|+.+|..|...+...+|..|||..+ +|||.++|++||||.||+.++++|.|.++++|..|+.||..||+.||..+.
T Consensus 568 kLl~~~l~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dt 645 (1051)
T KOG0955|consen 568 KLLQKSLDKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDT 645 (1051)
T ss_pred HHHHHHHHHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCe
Confidence 456788899999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016813 82 EVHIIAEQFLARFEELFRPINEKLM 106 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~~~~~~ 106 (382)
.+|+.|..+++.....+.......+
T Consensus 646 v~~r~av~~~e~~~~~~~~arke~e 670 (1051)
T KOG0955|consen 646 VYYRAAVRLRELIKKDFRNARKEPE 670 (1051)
T ss_pred ehHhhhHHHHhhhhhHHHhcccchh
Confidence 9999999999998888876655443
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.99 E-value=4.6e-10 Score=122.71 Aligned_cols=95 Identities=27% Similarity=0.411 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHH
Q 016813 5 GQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVH 84 (382)
Q Consensus 5 ~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~ 84 (382)
..|+.+++.-+.+|+|++||+... +|+||.+|++||||.||.+++..+.|.+..+|.+||++|+.||..||+..+...
T Consensus 1388 d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~ 1465 (1563)
T KOG0008|consen 1388 DNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYT 1465 (1563)
T ss_pred hhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccccc
Confidence 457788888889999999999998 999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016813 85 IIAEQFLARFEELFRPI 101 (382)
Q Consensus 85 ~~A~~L~~~fe~~~~~~ 101 (382)
..|+++-.+....+.+.
T Consensus 1466 ~k~~k~~ev~~~~~~e~ 1482 (1563)
T KOG0008|consen 1466 KKARKIGEVGLANLLEY 1482 (1563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887766655554433
No 45
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.79 E-value=1e-09 Score=117.10 Aligned_cols=93 Identities=33% Similarity=0.606 Sum_probs=86.0
Q ss_pred HHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHH
Q 016813 9 TKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAE 88 (382)
Q Consensus 9 ~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~ 88 (382)
+.+.+|.++|+|..||+.+.+++|.||.+|++|||++||+.+++++.|....+..+|+.-+|.||+.||..+.+|..++.
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 016813 89 QFLARFEELFRPI 101 (382)
Q Consensus 89 ~L~~~fe~~~~~~ 101 (382)
.+...|......+
T Consensus 82 ~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 82 SLEKLFPKKLRSM 94 (640)
T ss_pred cchhhcccccccc
Confidence 9999886555433
No 46
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.76 E-value=1.9e-08 Score=110.45 Aligned_cols=104 Identities=27% Similarity=0.418 Sum_probs=94.4
Q ss_pred HHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHH
Q 016813 4 CGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEV 83 (382)
Q Consensus 4 c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v 83 (382)
+..|+.++..-++..+|..||+... +++||.||+.||||.|+|+.+..+.|.+-++|..|+.||++|..+||++.+.+
T Consensus 1266 l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~ 1343 (1563)
T KOG0008|consen 1266 LETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASL 1343 (1563)
T ss_pred hHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHH
Confidence 4567888889999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016813 84 HIIAEQFLARFEELFRPINEKLMQED 109 (382)
Q Consensus 84 ~~~A~~L~~~fe~~~~~~~~~~~~~~ 109 (382)
...+..+...+-..|.+-..++...+
T Consensus 1344 t~~~q~mls~~~~~~~ekedk~~~lE 1369 (1563)
T KOG0008|consen 1344 TRQQQSMLSLCFEKLKEKEDKLWRLE 1369 (1563)
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 99999998888888877666654433
No 47
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.74 E-value=1.9e-08 Score=104.70 Aligned_cols=95 Identities=25% Similarity=0.292 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 016813 3 NCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 76 (382)
Q Consensus 3 ~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~y 76 (382)
+...||..+..+.. ...|.+..+... .|+||.+|..||.|..|++|+..+.|.+.+.|..|++||+.||..|
T Consensus 56 ~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~ 133 (629)
T KOG1827|consen 56 KFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLY 133 (629)
T ss_pred HHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 45667777776654 567777777776 8999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 016813 77 NPKDHEVHIIAEQFLARFEELFR 99 (382)
Q Consensus 77 N~~~s~v~~~A~~L~~~fe~~~~ 99 (382)
|.+++.+++++..|...|...-.
T Consensus 134 n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 134 NRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred cCcchhhhhhhhhhhcchhhhhc
Confidence 99999999999999999988654
No 48
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.70 E-value=2.2e-08 Score=107.68 Aligned_cols=100 Identities=28% Similarity=0.375 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
+.|..|+....++.. +..|........ +|+||.+|++||++..|++++.++.|.+..+...||.++|.||+.
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 458888888886554 678887766666 899999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEELFRPINE 103 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 103 (382)
||..||.||..|..|+.+|...+..+..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999988776653
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.68 E-value=1.5e-08 Score=107.17 Aligned_cols=67 Identities=33% Similarity=0.474 Sum_probs=63.7
Q ss_pred CCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCH
Q 016813 14 HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHE 82 (382)
Q Consensus 14 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~ 82 (382)
+.++|+|.++|+... .|+||.+|+.||||+|+.+|+..+.|.+.++|+.|+.+||.||.+||..-+.
T Consensus 301 ~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~ 367 (720)
T KOG1472|consen 301 TEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESH 367 (720)
T ss_pred cccccccccCCChhh--CcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccch
Confidence 678999999999998 9999999999999999999999999999999999999999999999996544
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.27 E-value=1.7e-07 Score=91.68 Aligned_cols=94 Identities=23% Similarity=0.222 Sum_probs=84.3
Q ss_pred HHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHH
Q 016813 4 CGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEV 83 (382)
Q Consensus 4 c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v 83 (382)
.+.++.+|.+...-..|.-||-..- .|+|.++|+.|||+.|++.|++-++|.+..+|..|.+++..||..||...+.+
T Consensus 24 ~ehhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~ 101 (418)
T KOG1828|consen 24 AEHHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVP 101 (418)
T ss_pred HHHHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccc
Confidence 3567777777777888999998887 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 016813 84 HIIAEQFLARFEELFR 99 (382)
Q Consensus 84 ~~~A~~L~~~fe~~~~ 99 (382)
+..|.+|..+-...+.
T Consensus 102 ~~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 102 IVAAKRLCPVRLGMTQ 117 (418)
T ss_pred cccccccchhhcchhh
Confidence 9999998776655554
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.97 E-value=4.4e-06 Score=81.98 Aligned_cols=80 Identities=25% Similarity=0.148 Sum_probs=71.6
Q ss_pred HHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHH
Q 016813 10 KLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQ 89 (382)
Q Consensus 10 ~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~ 89 (382)
+|........|..++-... .|.|.-+|++|+|++|++.|..++.|.+ .+|..|+.||+-||++||.+...+|.+|..
T Consensus 219 kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank 295 (418)
T KOG1828|consen 219 KLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANK 295 (418)
T ss_pred HhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHh
Confidence 3444445788888887776 8999999999999999999999999999 999999999999999999999999999998
Q ss_pred HHH
Q 016813 90 FLA 92 (382)
Q Consensus 90 L~~ 92 (382)
+..
T Consensus 296 ~lh 298 (418)
T KOG1828|consen 296 QLH 298 (418)
T ss_pred hhh
Confidence 765
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.00 E-value=0.00018 Score=72.34 Aligned_cols=88 Identities=31% Similarity=0.415 Sum_probs=80.0
Q ss_pred HhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHH
Q 016813 12 MKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFL 91 (382)
Q Consensus 12 ~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~ 91 (382)
..+-.+|+|..++.... .|+|++.|..+|++.|.+.+|..+.|....+|..|.+++|.||..||+.....+..+..+.
T Consensus 276 ~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (371)
T COG5076 276 QAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLE 353 (371)
T ss_pred ccccccccccccCCccc--ccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchh
Confidence 45567899999999888 9999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHH
Q 016813 92 ARFEELFRPI 101 (382)
Q Consensus 92 ~~fe~~~~~~ 101 (382)
..|....+..
T Consensus 354 ~~~~~~~~~~ 363 (371)
T COG5076 354 DFVIKKTRLI 363 (371)
T ss_pred hhHhhhhhhh
Confidence 8877665533
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.83 E-value=0.0018 Score=55.31 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016813 40 NPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLM 106 (382)
Q Consensus 40 ~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~ 106 (382)
.|.||.-|++||++|.|+++.+|.+||-.|+.-++.-.+....+-+.-..+.-+|-+.+..++.+++
T Consensus 58 ~p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 58 PPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred CcccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 3899999999999999999999999999999999877665555555555566677777766666654
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=94.75 E-value=0.028 Score=60.64 Aligned_cols=64 Identities=23% Similarity=0.382 Sum_probs=54.4
Q ss_pred cccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHHH
Q 016813 34 YYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEEL 97 (382)
Q Consensus 34 Y~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~ 97 (382)
|..-..-|..|..|+.+|++++|++.+.|.+||..|..||.+|.+.+-.|...+..|...|..-
T Consensus 1046 ~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1046 VDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred cCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 4444677999999999999999999999999999999999999998887777777776666543
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=0.27 Score=55.21 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=57.3
Q ss_pred CCccccCCCCccc---cCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHhHhhhCCCC
Q 016813 16 LGYIFNSPVDVVG---MALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAA--DVRLTFNNAMTYNPKD 80 (382)
Q Consensus 16 ~a~~F~~PVd~~~---~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~--Dv~Lif~Na~~yN~~~ 80 (382)
....|..|+.... +++++|..+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3678888887532 225689999999999999999999999999999999 9999999999999975
No 56
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=87.27 E-value=0.48 Score=50.67 Aligned_cols=8 Identities=25% Similarity=0.264 Sum_probs=3.2
Q ss_pred HHHHHhcC
Q 016813 210 KLGIGLQS 217 (382)
Q Consensus 210 ~L~~~I~~ 217 (382)
.|++-|+.
T Consensus 937 rla~~l~~ 944 (1463)
T PHA03308 937 RLANYLRG 944 (1463)
T ss_pred HHHHHHhc
Confidence 34444443
No 57
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=86.81 E-value=0.46 Score=46.37 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHH
Q 016813 57 DSPASFAADVRL 68 (382)
Q Consensus 57 ~s~~eF~~Dv~L 68 (382)
-++++|..++..
T Consensus 62 isveeF~~~fer 73 (407)
T KOG2130|consen 62 ISVEEFIERFER 73 (407)
T ss_pred CCHHHHHHHhcc
Confidence 467777777654
No 58
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=86.55 E-value=0.87 Score=52.23 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=11.1
Q ss_pred HHHHHhc--CCCCCHHHHHHHH
Q 016813 47 VKSKLSK--NLYDSPASFAADV 66 (382)
Q Consensus 47 Ik~kL~~--~~Y~s~~eF~~Dv 66 (382)
+-.||.+ |.|..+.+|+.|-
T Consensus 47 LssriQ~mLGnYeemk~~~~~~ 68 (1191)
T PF05110_consen 47 LSSRIQNMLGNYEEMKELLTDK 68 (1191)
T ss_pred HHHHHHHHhcCHHHHhcccccc
Confidence 4445554 5566666665554
No 59
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=85.17 E-value=0.68 Score=49.61 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=3.7
Q ss_pred ChhhHHHHH
Q 016813 219 PQEKMEQVI 227 (382)
Q Consensus 219 ~~e~l~~VI 227 (382)
|++.+++..
T Consensus 1017 pg~f~eray 1025 (1463)
T PHA03308 1017 PGEFLERAY 1025 (1463)
T ss_pred CchHHHHHH
Confidence 344444433
No 60
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=79.16 E-value=1.3 Score=46.21 Aligned_cols=14 Identities=7% Similarity=0.418 Sum_probs=6.0
Q ss_pred ChhhHHHHHHHHHh
Q 016813 219 PQEKMEQVIHILKK 232 (382)
Q Consensus 219 ~~e~l~~VI~II~~ 232 (382)
|+.+-..++.||-+
T Consensus 481 p~~q~~elc~mii~ 494 (739)
T KOG2140|consen 481 PESQEKELCNMIID 494 (739)
T ss_pred CchhhHHHHHHHHH
Confidence 33333344555444
No 61
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=76.59 E-value=2 Score=44.90 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHHH
Q 016813 251 LDTETLWELDRFVT 264 (382)
Q Consensus 251 L~~~TL~eL~~~V~ 264 (382)
+....|+.|-+|..
T Consensus 538 ~EtnkLRnlakffa 551 (739)
T KOG2140|consen 538 YETNKLRNLAKFFA 551 (739)
T ss_pred HhHHHHHHHHHHHH
Confidence 33334444444433
No 62
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=74.68 E-value=3 Score=48.02 Aligned_cols=11 Identities=82% Similarity=0.839 Sum_probs=4.8
Q ss_pred CCCCCCCCCCC
Q 016813 357 SDSSSSSDSDS 367 (382)
Q Consensus 357 ~~~~s~s~s~s 367 (382)
|.|+|+|||+|
T Consensus 446 SESsS~SDSES 456 (1191)
T PF05110_consen 446 SESSSSSDSES 456 (1191)
T ss_pred CCccCcccccc
Confidence 34444444443
No 63
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=70.58 E-value=1.1 Score=48.93 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=58.6
Q ss_pred cccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCC--------------C----------CHH------HHHHHHHH
Q 016813 19 IFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLY--------------D----------SPA------SFAADVRL 68 (382)
Q Consensus 19 ~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y--------------~----------s~~------eF~~Dv~L 68 (382)
.|--++|... .|.|..+...|.+|+|++..|.+..| . ++. +..+-+++
T Consensus 85 qlv~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~ 162 (1113)
T KOG0644|consen 85 QLVPMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPS 162 (1113)
T ss_pred HhccCcCCCC--CcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcc
Confidence 3445666665 78899999999999999999999887 2 233 36677888
Q ss_pred HHHhHhhhCCCCCHHH--HHHHHHHHHHHHHH
Q 016813 69 TFNNAMTYNPKDHEVH--IIAEQFLARFEELF 98 (382)
Q Consensus 69 if~Na~~yN~~~s~v~--~~A~~L~~~fe~~~ 98 (382)
|-.||+.++.|++.|. ++..+|.-.|...|
T Consensus 163 i~~at~~~akPgtmvqkmk~ikrLlgH~naVy 194 (1113)
T KOG0644|consen 163 IGCATFSIAKPGTMVQKMKNIKRLLGHRNAVY 194 (1113)
T ss_pred cccceeeecCcHHHHHHHHHHHHHHhhhhhee
Confidence 9999999999999654 34555555555443
No 64
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=69.71 E-value=3.2 Score=40.66 Aligned_cols=11 Identities=27% Similarity=0.235 Sum_probs=4.9
Q ss_pred CCCCcccccCC
Q 016813 312 EAGDEDVDIGD 322 (382)
Q Consensus 312 e~~~e~vdi~~ 322 (382)
++..|..||.+
T Consensus 326 ~~~pel~~l~~ 336 (407)
T KOG2130|consen 326 LQRPELADLAD 336 (407)
T ss_pred hcChhHHHHhh
Confidence 34444445543
No 65
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=67.58 E-value=26 Score=28.39 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=44.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016813 53 KNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEK 104 (382)
Q Consensus 53 ~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~ 104 (382)
...|.|..-|...|..|-.....++..+..+..||..+...|++.|.....-
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~~ 54 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNLL 54 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3468899999999998888888888778899999999999999999865443
No 66
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=57.70 E-value=14 Score=38.91 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=12.8
Q ss_pred EEeCcCCCHHHHHHHHHHHHHHHHHH
Q 016813 245 ELDIEALDTETLWELDRFVTNYKKMV 270 (382)
Q Consensus 245 EiDid~L~~~TL~eL~~~V~~~~k~~ 270 (382)
|+++|++.-=+-..=..|+..|-+++
T Consensus 39 efn~dd~n~wm~ldd~nflntwtknv 64 (782)
T PF07218_consen 39 EFNVDDINSWMKLDDANFLNTWTKNV 64 (782)
T ss_pred ccCcccchhcccccHHHHHHHHhhcc
Confidence 44445444333333345666666543
No 67
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=55.96 E-value=14 Score=29.35 Aligned_cols=67 Identities=15% Similarity=0.330 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHhcC-CChhhHHHHHHHHHhhcCCCCCCCC--eEEEeCcCC-CHHHHHHHHHHHHHHH
Q 016813 201 REMSMEEKHKLGIGLQS-LPQEKMEQVIHILKKRNGNLRQDED--EIELDIEAL-DTETLWELDRFVTNYK 267 (382)
Q Consensus 201 r~mT~eEK~~L~~~I~~-L~~e~l~~VI~II~~~~p~~~~~~d--eiEiDid~L-~~~TL~eL~~~V~~~~ 267 (382)
.-||.+|-.+++..-+- |+.++.+.|+.+++....+...+.+ .+=..|..+ +++|..++..++..|.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf~ 83 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQFT 83 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 45899999999999874 7899999999999998777665432 333334444 6677777777666553
No 68
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=52.61 E-value=1.8 Score=46.15 Aligned_cols=75 Identities=8% Similarity=-0.132 Sum_probs=65.4
Q ss_pred ccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHH
Q 016813 18 YIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARF 94 (382)
Q Consensus 18 ~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~f 94 (382)
..|..-++.+. +|.|+.+++-||-+..+.+++..++|.....|..|+-..|.|+-.|+....-++..+..|.+.+
T Consensus 214 er~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 214 ERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred cccccCccccc--ccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 34455555555 8999999999999999999999999999999999999999999999999988888888876643
No 69
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=52.30 E-value=22 Score=26.86 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 016813 45 GTVKSKLSKNLYDSPASFAADVRLTFN 71 (382)
Q Consensus 45 ~tIk~kL~~~~Y~s~~eF~~Dv~Lif~ 71 (382)
..|+..+..|.|.+..+++++..++|.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998876554
No 70
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=51.33 E-value=21 Score=35.99 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=15.7
Q ss_pred ccCCCCCCCCCCCceeccCCCCC
Q 016813 319 DIGDEIPMSSFPPVEIEKDNAHN 341 (382)
Q Consensus 319 di~~~~p~~~~~pv~iekd~~~~ 341 (382)
|-+|.+-..+.-|+.+++++.-.
T Consensus 369 ~~~d~~~~~~~~p~r~e~~~~k~ 391 (425)
T KOG1869|consen 369 DSEDYIAKTNLAPIRVEKSAEKV 391 (425)
T ss_pred ccCCccccccccccccccccchh
Confidence 44555555677789999887654
No 71
>KOG4795 consensus Protein associated with transcriptional elongation factor ELL [Transcription]
Probab=35.18 E-value=33 Score=32.37 Aligned_cols=10 Identities=80% Similarity=0.760 Sum_probs=5.8
Q ss_pred CCCCCCCCCC
Q 016813 367 SGSSSGSDSD 376 (382)
Q Consensus 367 s~~~~~~~~~ 376 (382)
+.|.+|||+|
T Consensus 254 slSEsGSDsd 263 (264)
T KOG4795|consen 254 SLSESGSDSD 263 (264)
T ss_pred ccccCCCcCC
Confidence 4555666655
No 72
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=34.25 E-value=33 Score=28.55 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=50.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhhcCCCCCCCCeEEEeCcCCCHHHHHHHHHHHHHHHH
Q 016813 195 AKDPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFVTNYKK 268 (382)
Q Consensus 195 ~~~~~~r~mT~eEK~~L~~~I~~L~~e~l~~VI~II~~~~p~~~~~~deiEiDid~L~~~TL~eL~~~V~~~~k 268 (382)
-.+..++||.+....+.-..... ++..+.++.++...+-....+..+++.+.....++|.+-.|+..+.+
T Consensus 38 Y~~iIK~PMDL~ti~~kl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (114)
T cd05494 38 YRDVIKRPMSFGTKVNNIVETGA----RDLEDLQIVQEDPADKQIDDEGRRSPSNIYAVEALEQLIVFQCKQVK 107 (114)
T ss_pred hhhhcCCCCChHHHHHHHHcccc----ccccccccccccccccccccccccCcccccchhhcccchHHHHhhhh
Confidence 34567899999987766655433 34455666666555545566788899999999999999999987764
No 73
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=32.62 E-value=89 Score=33.26 Aligned_cols=15 Identities=27% Similarity=0.529 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 016813 87 AEQFLARFEELFRPI 101 (382)
Q Consensus 87 A~~L~~~fe~~~~~~ 101 (382)
+.-|.-+|-.+|+.+
T Consensus 5 ~~sllvlf~alyqnv 19 (782)
T PF07218_consen 5 ASSLLVLFYALYQNV 19 (782)
T ss_pred HHHHHHHHHHHHHhh
Confidence 444555565555544
No 74
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=32.49 E-value=60 Score=25.30 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016813 45 GTVKSKLSKNLYDSPASFAADVRLTF 70 (382)
Q Consensus 45 ~tIk~kL~~~~Y~s~~eF~~Dv~Lif 70 (382)
.-|+.++.+|.|.+..++++|--.++
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRll 40 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLL 40 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45899999999999999998854444
No 75
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=32.29 E-value=1.2e+02 Score=22.85 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCeEEEeCcCCCHHHHHHHHHHHHHH
Q 016813 221 EKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFVTNY 266 (382)
Q Consensus 221 e~l~~VI~II~~~~p~~~~~~deiEiDid~L~~~TL~eL~~~V~~~ 266 (382)
++...|++.|+.. .-+-+||+.|+.+..+++-+|+...
T Consensus 10 ~D~~~i~~~l~~g--------~~Vivnl~~l~~~~~~Ri~Dfl~G~ 47 (73)
T PF04472_consen 10 EDAREIVDALREG--------KIVIVNLENLDDEEAQRILDFLSGA 47 (73)
T ss_dssp GGHHHHHHHHHTT----------EEEE-TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--------CEEEEECCCCCHHHHHHHHHHHhch
Confidence 5667788888664 5789999999999988888888654
No 76
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=29.37 E-value=1e+02 Score=31.26 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=27.5
Q ss_pred CChhhHHHHHHHHHhhcCCCCCCCCeEEEeCcCCCHHHHHHHHHH
Q 016813 218 LPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRF 262 (382)
Q Consensus 218 L~~e~l~~VI~II~~~~p~~~~~~deiEiDid~L~~~TL~eL~~~ 262 (382)
|++++|.++++.|+++.+......=.+|.+.+.++.+-|..|++.
T Consensus 87 L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~ 131 (394)
T PRK08898 87 LSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRAS 131 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHc
Confidence 567788888888887765432222345555566666555555543
No 77
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=28.45 E-value=2.1e+02 Score=22.18 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHhhcCCCCCCCCeEEEeCcCCCHHHHHHHHHHHHHHHH
Q 016813 203 MSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFVTNYKK 268 (382)
Q Consensus 203 mT~eEK~~L~~~I~~L~~e~l~~VI~II~~~~p~~~~~~deiEiDid~L~~~TL~eL~~~V~~~~k 268 (382)
.|.+||.+|+.+|..+. |-|+.+|++-.+. .. |+- +=.|.++|-.-|++-...|-+
T Consensus 3 Vt~~EkeQLS~AID~mn-EGLD~fI~lYNeS---e~---Dep---Liql~detael~~~A~~~yG~ 58 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRMN-EGLDTFIQLYNES---EK---DEP---LIQLEDETAELIRQAREKYGQ 58 (84)
T ss_pred CchHHHHHHHHHHHHHH-hhHHHHHHHHccc---cc---ccc---hhhcchhHHHHHHHHHHHHhH
Confidence 68899999999998875 4556655555332 11 222 225677787777776666654
No 78
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=26.92 E-value=58 Score=30.17 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhHhhhCCC
Q 016813 60 ASFAADVRLTFNNAMTYNPK 79 (382)
Q Consensus 60 ~eF~~Dv~Lif~Na~~yN~~ 79 (382)
..|..-+|-|..|||+||+.
T Consensus 185 vsWt~aLR~IV~nCYk~Hgr 204 (214)
T PF10491_consen 185 VSWTQALRTIVKNCYKYHGR 204 (214)
T ss_pred ccHHHHHHHHHHHHHHHhcH
Confidence 38999999999999999985
No 79
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=26.15 E-value=68 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=15.0
Q ss_pred CcCCCHHHHHHHHHHHHHHH
Q 016813 248 IEALDTETLWELDRFVTNYK 267 (382)
Q Consensus 248 id~L~~~TL~eL~~~V~~~~ 267 (382)
|..|+++-+.++.+||+-++
T Consensus 9 i~~LP~~~~~Evldfi~fL~ 28 (66)
T PF10047_consen 9 IQQLPEELQQEVLDFIEFLL 28 (66)
T ss_pred HHHCCHHHHHHHHHHHHHHH
Confidence 45678888888888887665
No 80
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=25.20 E-value=1.3e+02 Score=30.22 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=26.7
Q ss_pred CChhhHHHHHHHHHhhcCCCCCCCCeEEEeCcCCCHHHHHHHHHH
Q 016813 218 LPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRF 262 (382)
Q Consensus 218 L~~e~l~~VI~II~~~~p~~~~~~deiEiDid~L~~~TL~eL~~~ 262 (382)
|++++|.++++.|++..+......=.||.+.+.++.+.|..|+++
T Consensus 69 l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~ 113 (380)
T PRK09057 69 MQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAA 113 (380)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHc
Confidence 456777777777777644322111246666666666666666544
No 81
>PHA03325 nuclear-egress-membrane-like protein; Provisional
Probab=25.10 E-value=1.1e+02 Score=30.92 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=5.2
Q ss_pred CccccCCCCcc
Q 016813 17 GYIFNSPVDVV 27 (382)
Q Consensus 17 a~~F~~PVd~~ 27 (382)
..+|..++|..
T Consensus 67 ~FiFCt~~D~~ 77 (418)
T PHA03325 67 SFIFCTSRDYR 77 (418)
T ss_pred eEEEEecchHH
Confidence 34455555543
No 82
>PF12411 Choline_sulf_C: Choline sulfatase enzyme C terminal
Probab=23.57 E-value=1.5e+02 Score=21.52 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=27.2
Q ss_pred HHHHHHH-HHHhCCC-CccccCCCCccccCCCccccccCCCCCHHHHHHH
Q 016813 3 NCGQILT-KLMKHKL-GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSK 50 (382)
Q Consensus 3 ~c~~il~-~L~~~~~-a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~k 50 (382)
++..++- .|.+... +|-|.-++|... .+|.+-|||+.++.+
T Consensus 9 rrRr~V~~AL~~G~~~~WDyqP~~das~-------~YvRnh~~Ld~lE~~ 51 (54)
T PF12411_consen 9 RRRRFVYSALKQGRFTSWDYQPPQDASQ-------RYVRNHMDLDDLERR 51 (54)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCcCcHH-------HHHHcCCCHHHHHHH
Confidence 3445553 4444443 677776666654 679999999999765
No 83
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.01 E-value=54 Score=31.26 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=9.9
Q ss_pred CCCCCHHHHHHHHHHh
Q 016813 200 KREMSMEEKHKLGIGL 215 (382)
Q Consensus 200 ~r~mT~eEK~~L~~~I 215 (382)
.-.+++.+++-|...=
T Consensus 90 ~ghl~fqcRn~~~vke 105 (306)
T KOG2985|consen 90 VGHLTFQCRNFLSVKE 105 (306)
T ss_pred cchhhHHHhhhhhccc
Confidence 3457777777665543
Done!