Query 016813
Match_columns 382
No_of_seqs 290 out of 1384
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 1.9E-29 6.5E-34 211.5 12.5 101 1-103 15-115 (117)
2 2ouo_A HUNK1 protein, bromodom 100.0 9.6E-30 3.3E-34 217.1 9.9 102 1-102 24-128 (130)
3 3jvl_A Bromodomain-containing 100.0 1.3E-29 4.3E-34 213.5 8.6 102 1-102 11-115 (120)
4 2d9e_A Peregrin; four-helix bu 100.0 1.4E-28 4.7E-33 207.4 13.4 104 2-107 10-113 (121)
5 2oss_A HUNK1 protein, bromodom 100.0 7.5E-29 2.6E-33 210.7 11.3 99 3-101 25-123 (127)
6 3d7c_A General control of amin 100.0 1E-28 3.5E-33 205.5 11.7 98 2-101 10-107 (112)
7 1e6i_A Transcriptional activat 100.0 7.2E-29 2.5E-33 209.1 10.9 99 2-102 16-114 (121)
8 3p1f_A CREB-binding protein; s 100.0 1.4E-28 4.8E-33 206.8 12.6 104 2-105 14-118 (119)
9 3q2e_A Bromodomain and WD repe 100.0 2.7E-28 9.2E-33 206.3 12.9 103 2-106 13-116 (123)
10 3nxb_A CAT eye syndrome critic 100.0 1.8E-28 6.1E-33 205.3 10.9 97 2-100 19-115 (116)
11 4alg_A Bromodomain-containing 100.0 2.5E-28 8.5E-33 214.1 11.4 100 3-102 36-135 (154)
12 3mb3_A PH-interacting protein; 100.0 4.9E-28 1.7E-32 207.9 12.8 103 2-106 24-127 (135)
13 2i7k_A Bromodomain-containing 100.0 4E-28 1.4E-32 203.3 11.8 99 2-102 11-109 (117)
14 3fkm_X Signaling protein; brom 100.0 3.6E-28 1.2E-32 215.6 12.1 101 2-102 24-124 (166)
15 2dat_A Possible global transcr 99.9 3.7E-28 1.3E-32 205.4 10.5 98 2-101 16-119 (123)
16 3rcw_A Bromodomain-containing 99.9 1.8E-27 6.2E-32 204.3 14.0 104 2-107 16-119 (135)
17 2yyn_A Transcription intermedi 99.9 8.3E-28 2.8E-32 206.4 11.7 98 2-102 23-122 (135)
18 3iu5_A Protein polybromo-1; PB 99.9 9.5E-28 3.2E-32 200.9 11.2 101 1-103 7-113 (116)
19 2grc_A Probable global transcr 99.9 1.2E-27 4.1E-32 203.9 11.6 101 2-104 14-121 (129)
20 3hme_A Bromodomain-containing 99.9 1.9E-27 6.3E-32 201.1 12.6 99 2-102 16-114 (123)
21 3mqm_A Probable histone-lysine 99.9 2.5E-27 8.4E-32 201.1 13.0 105 2-108 12-122 (126)
22 3mb4_A Protein polybromo-1; PB 99.9 1.9E-27 6.6E-32 201.2 10.7 98 2-101 18-121 (124)
23 3ljw_A Protein polybromo-1; al 99.9 4E-27 1.4E-31 198.2 12.0 101 2-104 11-117 (120)
24 3k2j_A Protein polybromo-1; PB 99.9 7.8E-27 2.7E-31 199.0 12.2 101 2-104 20-126 (130)
25 3uv4_A Second bromodomain of h 99.9 2.3E-26 7.7E-31 202.3 11.8 104 3-108 29-137 (158)
26 2ri7_A Nucleosome-remodeling f 99.9 3.6E-26 1.2E-30 204.3 9.5 98 2-101 75-172 (174)
27 3tlp_A Protein polybromo-1; PB 99.9 1.4E-25 4.7E-30 196.0 11.5 100 2-103 27-133 (150)
28 3dai_A ATPase family AAA domai 99.9 3.1E-25 1.1E-29 189.2 12.0 96 2-99 13-112 (130)
29 3o36_A Transcription intermedi 99.9 2.8E-25 9.5E-30 200.3 11.5 97 2-101 84-182 (184)
30 2ro1_A Transcription intermedi 99.9 4E-25 1.4E-29 200.0 8.6 95 2-103 79-178 (189)
31 3uv5_A Transcription initiatio 99.9 2.6E-24 8.9E-29 204.6 13.3 105 2-108 17-121 (265)
32 2dkw_A Hypothetical protein KI 99.9 4.4E-24 1.5E-28 182.1 11.5 91 2-99 15-109 (131)
33 3u5n_A E3 ubiquitin-protein li 99.9 4.8E-24 1.6E-28 195.7 11.3 98 2-102 84-201 (207)
34 3uv5_A Transcription initiatio 99.9 8.9E-24 3.1E-28 200.9 12.3 95 11-107 149-243 (265)
35 3aad_A Transcription initiatio 99.9 1E-23 3.5E-28 203.0 8.8 103 2-106 50-152 (292)
36 3aad_A Transcription initiatio 99.9 5.5E-23 1.9E-27 197.9 12.5 96 10-107 181-276 (292)
37 2r0y_A Chromatin structure-rem 99.9 1.7E-22 5.7E-27 196.0 9.4 86 14-101 178-263 (311)
38 2r10_A Chromatin structure-rem 99.9 2.6E-22 9E-27 198.5 9.9 86 14-101 228-313 (361)
39 2r10_A Chromatin structure-rem 99.8 1.9E-20 6.6E-25 185.1 8.2 95 3-101 82-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 3.9E-20 1.3E-24 179.3 8.0 95 3-101 32-129 (311)
41 2jns_A Bromodomain-containing 99.7 1.3E-18 4.4E-23 138.6 4.4 72 197-268 12-84 (90)
42 3iu6_A Protein polybromo-1; PB 99.7 9E-17 3.1E-21 138.0 13.4 96 3-104 11-112 (147)
43 3lqh_A Histone-lysine N-methyl 99.6 1.4E-15 4.8E-20 136.2 7.4 91 3-106 79-169 (183)
44 2lm0_A AF4/FMR2 family member 96.6 0.011 3.7E-07 48.4 8.7 62 202-264 58-120 (125)
45 2olv_A Penicillin-binding prot 21.9 27 0.00091 36.6 1.1 47 218-264 445-503 (669)
46 3kxe_C Antitoxin protein PARD- 21.3 89 0.003 23.7 3.7 29 44-72 15-43 (88)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.96 E-value=1.9e-29 Score=211.50 Aligned_cols=101 Identities=32% Similarity=0.536 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 1 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 1 mk~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
++.|..||..|++++.+|+|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+++
T Consensus 15 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (117)
T 3g0l_A 15 LALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDD 92 (117)
T ss_dssp HHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4789999999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 016813 81 HEVHIIAEQFLARFEELFRPINE 103 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~~~~ 103 (382)
+.++.+|..|++.|++.|+.+..
T Consensus 93 s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 93 SDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998753
No 2
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.96 E-value=9.6e-30 Score=217.10 Aligned_cols=102 Identities=45% Similarity=0.758 Sum_probs=97.5
Q ss_pred ChHHHHHHHHHHhCCC---CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 016813 1 MKNCGQILTKLMKHKL---GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 77 (382)
Q Consensus 1 mk~c~~il~~L~~~~~---a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN 77 (382)
|++|..||..|+.++. +|+|..|||+..+++|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 24 l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 103 (130)
T 2ouo_A 24 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 103 (130)
T ss_dssp HHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999885 8999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 016813 78 PKDHEVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 78 ~~~s~v~~~A~~L~~~fe~~~~~~~ 102 (382)
++++.++.+|..|++.|+.+|+.++
T Consensus 104 ~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 104 PPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999997653
No 3
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.96 E-value=1.3e-29 Score=213.48 Aligned_cols=102 Identities=45% Similarity=0.760 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHHhCCC---CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 016813 1 MKNCGQILTKLMKHKL---GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 77 (382)
Q Consensus 1 mk~c~~il~~L~~~~~---a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN 77 (382)
+++|..||..|+.++. +|+|..|||+..+++|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 11 l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 90 (120)
T 3jvl_A 11 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYN 90 (120)
T ss_dssp HHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4789999999999988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 016813 78 PKDHEVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 78 ~~~s~v~~~A~~L~~~fe~~~~~~~ 102 (382)
++++.++.+|..|++.|++.|..+.
T Consensus 91 ~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 91 PPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 9999999999999999999997654
No 4
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=207.42 Aligned_cols=104 Identities=28% Similarity=0.378 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
..|..||..|++++.+|+|.+||++.. +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++++
T Consensus 10 ~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 87 (121)
T 2d9e_A 10 ILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDT 87 (121)
T ss_dssp HHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 479999999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016813 82 EVHIIAEQFLARFEELFRPINEKLMQ 107 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~~~~~~~ 107 (382)
.+|.+|..|++.|+.+|..+...++.
T Consensus 88 ~~~~~A~~L~~~~~~~l~~~~~~~~~ 113 (121)
T 2d9e_A 88 IFYRAAVRLREQGGAVLRQARRQAEK 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887753
No 5
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.96 E-value=7.5e-29 Score=210.74 Aligned_cols=99 Identities=33% Similarity=0.587 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCH
Q 016813 3 NCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHE 82 (382)
Q Consensus 3 ~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~ 82 (382)
.|..||..|++++.+|+|.+|||+..+++|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++++.
T Consensus 25 ~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 104 (127)
T 2oss_A 25 LLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDD 104 (127)
T ss_dssp HHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46679999999999999999999987789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016813 83 VHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 83 v~~~A~~L~~~fe~~~~~~ 101 (382)
++.+|..|++.|++.|+.+
T Consensus 105 i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 105 IVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 9999999999999998754
No 6
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.96 E-value=1e-28 Score=205.50 Aligned_cols=98 Identities=27% Similarity=0.416 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|..||..|++|+.+++|..||++.. +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++++
T Consensus 10 ~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 87 (112)
T 3d7c_A 10 TTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDS 87 (112)
T ss_dssp HHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 579999999999999999999999976 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~ 101 (382)
.++.+|..|++.|++.|+.+
T Consensus 88 ~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 88 EYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999754
No 7
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.96 E-value=7.2e-29 Score=209.14 Aligned_cols=99 Identities=35% Similarity=0.533 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|..||..|++|+.+|+|..||+... +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++++
T Consensus 16 ~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 93 (121)
T 1e6i_A 16 AAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENT 93 (121)
T ss_dssp HHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 689999999999999999999999876 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~~ 102 (382)
.++.+|..|++.|+++|+.++
T Consensus 94 ~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 94 SYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999998764
No 8
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.96 E-value=1.4e-28 Score=206.81 Aligned_cols=104 Identities=36% Similarity=0.563 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHh-CCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 016813 2 KNCGQILTKLMK-HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 80 (382)
Q Consensus 2 k~c~~il~~L~~-~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~ 80 (382)
+.|..+|..|++ ++.+|+|..||++..+++|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+++
T Consensus 14 ~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 93 (119)
T 3p1f_A 14 QALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKT 93 (119)
T ss_dssp HHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 579999999988 6799999999999977799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Q 016813 81 HEVHIIAEQFLARFEELFRPINEKL 105 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~~~~~~ 105 (382)
+.++.+|..|++.|++.|..+...+
T Consensus 94 s~i~~~A~~L~~~f~~~~~~~~~~l 118 (119)
T 3p1f_A 94 SRVYKFCSKLAEVFEQEIDPVMQSL 118 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999887654
No 9
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=2.7e-28 Score=206.26 Aligned_cols=103 Identities=36% Similarity=0.649 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC-C
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK-D 80 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~-~ 80 (382)
++|..||..|++++.+|+|..||++.. +|+||++|++||||+||++||.+|.|.++.+|..||+|||.||++||++ +
T Consensus 13 ~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~ 90 (123)
T 3q2e_A 13 KQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKR 90 (123)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 679999999999999999999999986 9999999999999999999999999999999999999999999999996 9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016813 81 HEVHIIAEQFLARFEELFRPINEKLM 106 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~~~~~~~ 106 (382)
+.+|.+|..|++.|+++|+.+...+.
T Consensus 91 s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 91 SKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
No 10
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.95 E-value=1.8e-28 Score=205.26 Aligned_cols=97 Identities=28% Similarity=0.466 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|..||..|++++.+|+|..||++.. +|+|+++|++||||+||++||++|.|.++.+|..||+|||.||++||++++
T Consensus 19 ~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s 96 (116)
T 3nxb_A 19 TAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESS 96 (116)
T ss_dssp HHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 689999999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEELFRP 100 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~ 100 (382)
.++.+|..|++.|++.|..
T Consensus 97 ~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 97 EYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999864
No 11
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=2.5e-28 Score=214.11 Aligned_cols=100 Identities=30% Similarity=0.536 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCH
Q 016813 3 NCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHE 82 (382)
Q Consensus 3 ~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~ 82 (382)
.|..||..|++++.+|+|..|||+..+++|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++++.
T Consensus 36 ~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~ 115 (154)
T 4alg_A 36 LHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDD 115 (154)
T ss_dssp HHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46778899999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016813 83 VHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 83 v~~~A~~L~~~fe~~~~~~~ 102 (382)
++.+|..|++.|++.|+.+.
T Consensus 116 i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 116 IVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999997653
No 12
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=4.9e-28 Score=207.86 Aligned_cols=103 Identities=32% Similarity=0.571 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC-C
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK-D 80 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~-~ 80 (382)
++|..||..|++++.+|+|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++ +
T Consensus 24 ~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~ 101 (135)
T 3mb3_A 24 KQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKR 101 (135)
T ss_dssp HHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 689999999999999999999999966 9999999999999999999999999999999999999999999999997 9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016813 81 HEVHIIAEQFLARFEELFRPINEKLM 106 (382)
Q Consensus 81 s~v~~~A~~L~~~fe~~~~~~~~~~~ 106 (382)
+.+|.+|..|++.|+..|..+...+.
T Consensus 102 s~i~~~A~~L~~~f~~~~~~~~~~~~ 127 (135)
T 3mb3_A 102 SRIYSMSLRLSAFFEEHISSVLSDYK 127 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877664
No 13
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.95 E-value=4e-28 Score=203.30 Aligned_cols=99 Identities=26% Similarity=0.358 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|..||..|++++.+++|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++++
T Consensus 11 ~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s 88 (117)
T 2i7k_A 11 EALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPET 88 (117)
T ss_dssp HHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 579999999999999999999999865 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~~ 102 (382)
.++.+|..|++.|+++|..+.
T Consensus 89 ~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 89 IYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997653
No 14
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.95 E-value=3.6e-28 Score=215.57 Aligned_cols=101 Identities=34% Similarity=0.527 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|..||..|++++.+|+|..|||+..+++|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++++
T Consensus 24 ~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s 103 (166)
T 3fkm_X 24 LLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNS 103 (166)
T ss_dssp HHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 58999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~~ 102 (382)
.|+.+|..|++.|++.|..+.
T Consensus 104 ~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 104 VVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999998754
No 15
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=3.7e-28 Score=205.40 Aligned_cols=98 Identities=22% Similarity=0.365 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHhCC------CCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
++|..||..|++++ .+|+|.+||+... +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++
T Consensus 16 ~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 93 (123)
T 2dat_A 16 KQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQT 93 (123)
T ss_dssp HHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999987 5899999999875 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~~~~~ 101 (382)
||++++.+|.+|..|++.|+.+++.+
T Consensus 94 yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 94 FNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998754
No 16
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=204.33 Aligned_cols=104 Identities=26% Similarity=0.404 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
..|..||..|++++.+|+|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++++
T Consensus 16 ~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s 93 (135)
T 3rcw_A 16 VLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDT 93 (135)
T ss_dssp HHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 479999999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016813 82 EVHIIAEQFLARFEELFRPINEKLMQ 107 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~~~~~~~ 107 (382)
.+|.+|..|++.|+..|+.+...+..
T Consensus 94 ~~~~~A~~L~~~~~~~~~~~~~~~~~ 119 (135)
T 3rcw_A 94 VFYRAAVRLRDQGGVVLRQARREVDS 119 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877653
No 17
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=8.3e-28 Score=206.37 Aligned_cols=98 Identities=39% Similarity=0.722 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhHhhhCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK--NLYDSPASFAADVRLTFNNAMTYNPK 79 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~--~~Y~s~~eF~~Dv~Lif~Na~~yN~~ 79 (382)
++|..||..|++|+.+|+|..||+. .+|+||++|++||||+||++||++ +.|.++.+|.+||+|||.||++||++
T Consensus 23 ~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 99 (135)
T 2yyn_A 23 RKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 99 (135)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 6899999999999999999999997 389999999999999999999998 59999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 016813 80 DHEVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 80 ~s~v~~~A~~L~~~fe~~~~~~~ 102 (382)
++.++.+|..|++.|+++|+.+.
T Consensus 100 ~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 100 DSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 18
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.95 E-value=9.5e-28 Score=200.85 Aligned_cols=101 Identities=24% Similarity=0.368 Sum_probs=95.7
Q ss_pred ChHHHHHHHHHHhCC------CCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHh
Q 016813 1 MKNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAM 74 (382)
Q Consensus 1 mk~c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~ 74 (382)
+++|..||..|++++ .+|+|.+||+... +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||+
T Consensus 7 ~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 84 (116)
T 3iu5_A 7 IAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAK 84 (116)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 468999999999985 4999999999776 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016813 75 TYNPKDHEVHIIAEQFLARFEELFRPINE 103 (382)
Q Consensus 75 ~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 103 (382)
+||++++.++.+|..|++.|++.++.+..
T Consensus 85 ~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 85 SYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987754
No 19
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.95 E-value=1.2e-27 Score=203.85 Aligned_cols=101 Identities=24% Similarity=0.380 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHhCC-------CCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHh
Q 016813 2 KNCGQILTKLMKHK-------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAM 74 (382)
Q Consensus 2 k~c~~il~~L~~~~-------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~ 74 (382)
++|..||..|++++ .+|+|..||+... +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||+
T Consensus 14 ~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 91 (129)
T 2grc_A 14 KKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQ 91 (129)
T ss_dssp HHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999986 4899999999765 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016813 75 TYNPKDHEVHIIAEQFLARFEELFRPINEK 104 (382)
Q Consensus 75 ~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~ 104 (382)
+||++++.+|.+|..|++.|+..|+.+...
T Consensus 92 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 92 TFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999887653
No 20
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=201.07 Aligned_cols=99 Identities=32% Similarity=0.401 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|..||..|++++.+++|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++++
T Consensus 16 ~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s 93 (123)
T 3hme_A 16 QLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDT 93 (123)
T ss_dssp HHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 479999999999999999999999886 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~~ 102 (382)
.++.+|..|.+.|++.|....
T Consensus 94 ~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 94 VYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp HHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997654
No 21
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=201.15 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
+.|..|+..|++++. +|+|.+||+... +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 12 ~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 89 (126)
T 3mqm_A 12 QIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEK 89 (126)
T ss_dssp HHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 579999999998764 999999999986 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016813 76 YNPKDHEVHIIAEQFLARFEELFRPINEKLMQE 108 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~~~ 108 (382)
||++++.+|.+|..|++.|++.|..+..+++..
T Consensus 90 yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~i 122 (126)
T 3mqm_A 90 YYGRKSPVGRDVCRLRKAYYNARHEASAQIDEI 122 (126)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888643
No 22
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=1.9e-27 Score=201.25 Aligned_cols=98 Identities=28% Similarity=0.372 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHh------CCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMK------HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
+.|..||..|++ ++.+++|..||+... +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 18 ~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (124)
T 3mb4_A 18 QKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACT 95 (124)
T ss_dssp HHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999 455799999999876 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~~~~~ 101 (382)
||++++.++.+|..|++.|++.|+.+
T Consensus 96 yN~~~s~i~~~A~~L~~~f~~~~~~l 121 (124)
T 3mb4_A 96 YNEPESLIYKDALVLHKVLLETRRDL 121 (124)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 23
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=4e-27 Score=198.21 Aligned_cols=101 Identities=28% Similarity=0.354 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
+.|..||..|++++. +++|.+||+... +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 11 ~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 88 (120)
T 3ljw_A 11 EILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKT 88 (120)
T ss_dssp HHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 469999999999887 999999999876 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEELFRPINEK 104 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~~~~~~~~ 104 (382)
||++++.++.+|..|++.|++.|+.+..+
T Consensus 89 yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 89 YNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999988654
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.94 E-value=7.8e-27 Score=199.00 Aligned_cols=101 Identities=19% Similarity=0.284 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 016813 2 KNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 75 (382)
Q Consensus 2 k~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~ 75 (382)
++|..++..|.+... +|+|.+||+... +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++
T Consensus 20 ~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (130)
T 3k2j_A 20 FQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKR 97 (130)
T ss_dssp HHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 578999999998765 999999999876 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016813 76 YNPKDHEVHIIAEQFLARFEELFRPINEK 104 (382)
Q Consensus 76 yN~~~s~v~~~A~~L~~~fe~~~~~~~~~ 104 (382)
||++++.++.+|..|++.|+++|+.+...
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 98 YNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988654
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.93 E-value=2.3e-26 Score=202.33 Aligned_cols=104 Identities=31% Similarity=0.475 Sum_probs=95.0
Q ss_pred HHHHHHHHH-----HhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 016813 3 NCGQILTKL-----MKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 77 (382)
Q Consensus 3 ~c~~il~~L-----~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN 77 (382)
.|..||..+ +.++.+|+|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 29 ~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 29 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 466666654 45788999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016813 78 PKDHEVHIIAEQFLARFEELFRPINEKLMQE 108 (382)
Q Consensus 78 ~~~s~v~~~A~~L~~~fe~~~~~~~~~~~~~ 108 (382)
++++.++.+|..|.+.|+..|..+...+...
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~l 137 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYDEHLTQL 137 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988777543
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.93 E-value=3.6e-26 Score=204.26 Aligned_cols=98 Identities=32% Similarity=0.559 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|..||..|++++.+|+|..||++.. +|+|+++|++||||+||++||++|.|.++.+|.+||+|||.||++||++++
T Consensus 75 ~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 152 (174)
T 2ri7_A 75 EGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 152 (174)
T ss_dssp HHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 479999999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016813 82 EVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~ 101 (382)
.++.+|..|++.|+++|+.+
T Consensus 153 ~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 153 PFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998754
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=195.97 Aligned_cols=100 Identities=21% Similarity=0.340 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHhCCC-------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHh
Q 016813 2 KNCGQILTKLMKHKL-------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAM 74 (382)
Q Consensus 2 k~c~~il~~L~~~~~-------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~ 74 (382)
.+|..||..|++... +++|..||+... +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||+
T Consensus 27 ~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 104 (150)
T 3tlp_A 27 QRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNAR 104 (150)
T ss_dssp HHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 468899999988765 899999999876 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016813 75 TYNPKDHEVHIIAEQFLARFEELFRPINE 103 (382)
Q Consensus 75 ~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 103 (382)
+||++++.+|.+|..|++.|+++|+.+..
T Consensus 105 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 133 (150)
T 3tlp_A 105 HYNEEGSQVYNDAHILEKLLKEKRKELGP 133 (150)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999987753
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.92 E-value=3.1e-25 Score=189.16 Aligned_cols=96 Identities=27% Similarity=0.366 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
..|..+|..|+.++.+|+|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++++
T Consensus 13 ~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s 90 (130)
T 3dai_A 13 IFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRD 90 (130)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 468899999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HH----HHHHHHHHHHHHHHHH
Q 016813 82 EV----HIIAEQFLARFEELFR 99 (382)
Q Consensus 82 ~v----~~~A~~L~~~fe~~~~ 99 (382)
++ +.+|..|++.|..+++
T Consensus 91 ~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 91 PGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 77 6777888887777775
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.92 E-value=2.8e-25 Score=200.32 Aligned_cols=97 Identities=39% Similarity=0.733 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhHhhhCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK--NLYDSPASFAADVRLTFNNAMTYNPK 79 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~--~~Y~s~~eF~~Dv~Lif~Na~~yN~~ 79 (382)
++|..||..|+.++.+++|..||+.. +|+||++|++||||+||++||++ |.|.++.+|.+||+|||.||++||++
T Consensus 84 ~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 160 (184)
T 3o36_A 84 RKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 160 (184)
T ss_dssp HHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 57999999999999999999999854 89999999999999999999998 79999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 016813 80 DHEVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 80 ~s~v~~~A~~L~~~fe~~~~~~ 101 (382)
++.++.+|..|++.|+++|+.+
T Consensus 161 ~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 161 DSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876
No 30
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.91 E-value=4e-25 Score=199.99 Aligned_cols=95 Identities=19% Similarity=0.293 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccC--CCCCHHHHHHHHhcC---CCCCHHHHHHHHHHHHHhHhhh
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIK--NPMDLGTVKSKLSKN---LYDSPASFAADVRLTFNNAMTY 76 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk--~PMDL~tIk~kL~~~---~Y~s~~eF~~Dv~Lif~Na~~y 76 (382)
++|..||..|+.|+.+|+|++||+ |+||++|+ +||||+||++||++| .|.++.+|++||+|||.||++|
T Consensus 79 ~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~y 152 (189)
T 2ro1_A 79 RKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKL 152 (189)
T ss_dssp HHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 57999998 899999999999999 9999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016813 77 NPKDHEVHIIAEQFLARFEELFRPINE 103 (382)
Q Consensus 77 N~~~s~v~~~A~~L~~~fe~~~~~~~~ 103 (382)
| +++.++.+|..|++.|+++|+.++.
T Consensus 153 N-~~s~~~~~a~~L~~~Fe~~~~~~~~ 178 (189)
T 2ro1_A 153 T-EDKADVQSIIGLQRFFETRMNEAFG 178 (189)
T ss_dssp C-CSSCSSHHHHHHHHHHHHHHHHHTT
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 9 5888999999999999999987754
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.91 E-value=2.6e-24 Score=204.56 Aligned_cols=105 Identities=30% Similarity=0.503 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
+.|..||..|++++.+|+|..||++.. +|+||++|++||||+||++||.+|.|.++.+|..||+|||.||++||++++
T Consensus 17 ~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s 94 (265)
T 3uv5_A 17 SILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 94 (265)
T ss_dssp HHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCC
Confidence 479999999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016813 82 EVHIIAEQFLARFEELFRPINEKLMQE 108 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~~~~~~~~ 108 (382)
.++.+|..|.+.|+..|+.+..++...
T Consensus 95 ~i~~~A~~l~~~~~~~~~~~~~~~~~~ 121 (265)
T 3uv5_A 95 SLTQISQSMLDLCDEKLKEKEDKLARL 121 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999887766543
No 32
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=4.4e-24 Score=182.11 Aligned_cols=91 Identities=30% Similarity=0.470 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
..|..||..|++++.+|+|..| +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++++
T Consensus 15 ~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 87 (131)
T 2dkw_A 15 LFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKD 87 (131)
T ss_dssp HHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSS
T ss_pred HHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3699999999999999999998 799999999999999999999999999999999999999999999999999
Q ss_pred H----HHHHHHHHHHHHHHHHH
Q 016813 82 E----VHIIAEQFLARFEELFR 99 (382)
Q Consensus 82 ~----v~~~A~~L~~~fe~~~~ 99 (382)
+ ++..|..|++.|...++
T Consensus 88 ~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 88 PGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5 56888999888887764
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.90 E-value=4.8e-24 Score=195.67 Aligned_cols=98 Identities=41% Similarity=0.674 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHhHhhhCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK---NLYDSPASFAADVRLTFNNAMTYNP 78 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~---~~Y~s~~eF~~Dv~Lif~Na~~yN~ 78 (382)
++|..||..|++++.+++|..||+. ++|+||++|++||||+||++||++ |.|.++.+|.+||+|||.||++||+
T Consensus 84 ~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 160 (207)
T 3u5n_A 84 RKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNE 160 (207)
T ss_dssp HHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 5799999999999999999999987 389999999999999999999997 7999999999999999999999999
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHHHHHH
Q 016813 79 -----------------KDHEVHIIAEQFLARFEELFRPIN 102 (382)
Q Consensus 79 -----------------~~s~v~~~A~~L~~~fe~~~~~~~ 102 (382)
+++.++.+|..|+..|+.+|+.++
T Consensus 161 ~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~ 201 (207)
T 3u5n_A 161 MMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIY 201 (207)
T ss_dssp HHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998775
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=8.9e-24 Score=200.86 Aligned_cols=95 Identities=32% Similarity=0.510 Sum_probs=90.8
Q ss_pred HHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHH
Q 016813 11 LMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQF 90 (382)
Q Consensus 11 L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~L 90 (382)
|+.++.+|+|..||+... +|+||++|++||||+||++||.+|.|.++.+|..||+|||.||++||++++.+|.+|..|
T Consensus 149 l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l 226 (265)
T 3uv5_A 149 MMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 226 (265)
T ss_dssp TTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 677889999999999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 016813 91 LARFEELFRPINEKLMQ 107 (382)
Q Consensus 91 ~~~fe~~~~~~~~~~~~ 107 (382)
.+.|+..|..+...+..
T Consensus 227 ~~~~~~~~~~~~~~~~~ 243 (265)
T 3uv5_A 227 VNVCYQTLTEYDEHLTQ 243 (265)
T ss_dssp HHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988877754
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.89 E-value=1e-23 Score=203.04 Aligned_cols=103 Identities=30% Similarity=0.517 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 016813 2 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 81 (382)
Q Consensus 2 k~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s 81 (382)
..|..||..|+.++.+|+|..||++.. +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++++
T Consensus 50 ~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 127 (292)
T 3aad_A 50 SILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 127 (292)
T ss_dssp HHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCch
Confidence 469999999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016813 82 EVHIIAEQFLARFEELFRPINEKLM 106 (382)
Q Consensus 82 ~v~~~A~~L~~~fe~~~~~~~~~~~ 106 (382)
.++.+|..|.+.|++.|+.+..++.
T Consensus 128 ~i~~~A~~L~~~~~~~~~~~~~~~~ 152 (292)
T 3aad_A 128 SLTQISQSMLDLCDEKLKEKEDKLA 152 (292)
T ss_dssp HHHHHHTHHHHTTTTTGGGSHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcchhhhh
Confidence 9999999999999999987765543
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.89 E-value=5.5e-23 Score=197.94 Aligned_cols=96 Identities=32% Similarity=0.516 Sum_probs=91.1
Q ss_pred HHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHH
Q 016813 10 KLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQ 89 (382)
Q Consensus 10 ~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~ 89 (382)
.|+.++.+|+|..|||... +|+||++|++||||+||++||.+|.|.++.+|..||+|||.||++||++++.+|.+|..
T Consensus 181 ~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~ 258 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQE 258 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4778899999999999876 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 016813 90 FLARFEELFRPINEKLMQ 107 (382)
Q Consensus 90 L~~~fe~~~~~~~~~~~~ 107 (382)
|++.|+..+..+..++..
T Consensus 259 L~~~~~~~~~~~~~~l~~ 276 (292)
T 3aad_A 259 IVNVCYQTLTEYDEHLTQ 276 (292)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988877754
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.87 E-value=1.7e-22 Score=195.95 Aligned_cols=86 Identities=30% Similarity=0.391 Sum_probs=83.1
Q ss_pred CCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHH
Q 016813 14 HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLAR 93 (382)
Q Consensus 14 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~ 93 (382)
|+.+|+|.+||+... +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++++.+|.+|..|++.
T Consensus 178 ~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 255 (311)
T 2r0y_A 178 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 255 (311)
T ss_dssp SCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 567999999999986 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 016813 94 FEELFRPI 101 (382)
Q Consensus 94 fe~~~~~~ 101 (382)
|+.+|+..
T Consensus 256 f~~~~~~~ 263 (311)
T 2r0y_A 256 FNYLIQKE 263 (311)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999874
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=2.6e-22 Score=198.51 Aligned_cols=86 Identities=30% Similarity=0.391 Sum_probs=83.1
Q ss_pred CCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHH
Q 016813 14 HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLAR 93 (382)
Q Consensus 14 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~ 93 (382)
|+.+|+|.+|||... +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++++.||.+|..|++.
T Consensus 228 ~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 567999999999986 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 016813 94 FEELFRPI 101 (382)
Q Consensus 94 fe~~~~~~ 101 (382)
|+.+|+..
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999874
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.81 E-value=1.9e-20 Score=185.12 Aligned_cols=95 Identities=23% Similarity=0.207 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhCC--CCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhHhhhCCC
Q 016813 3 NCGQILTKLMKHK--LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYD-SPASFAADVRLTFNNAMTYNPK 79 (382)
Q Consensus 3 ~c~~il~~L~~~~--~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~-s~~eF~~Dv~Lif~Na~~yN~~ 79 (382)
.|..+|..|.+.. .+++|..||+... +||||++|++||||+||++|| +.|. ++.+|.+||+|||.||++||++
T Consensus 82 ~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~ 157 (361)
T 2r10_A 82 FISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEY 157 (361)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCS
T ss_pred HHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 5888888887644 4799999999876 999999999999999999998 5555 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 016813 80 DHEVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 80 ~s~v~~~A~~L~~~fe~~~~~~ 101 (382)
++.||.+|..|+++|+..|...
T Consensus 158 ~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 158 DSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988754
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.80 E-value=3.9e-20 Score=179.30 Aligned_cols=95 Identities=23% Similarity=0.207 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhCC--CCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhHhhhCCC
Q 016813 3 NCGQILTKLMKHK--LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYD-SPASFAADVRLTFNNAMTYNPK 79 (382)
Q Consensus 3 ~c~~il~~L~~~~--~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~-s~~eF~~Dv~Lif~Na~~yN~~ 79 (382)
+|..+|..+.... .+++|.+||+... +|+||++|++||||+||++|| +.|. ++.+|.+||+|||.||++||++
T Consensus 32 ~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~ 107 (311)
T 2r0y_A 32 FISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEY 107 (311)
T ss_dssp HHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCC
Confidence 4556666666533 4899999999876 999999999999999999999 5555 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 016813 80 DHEVHIIAEQFLARFEELFRPI 101 (382)
Q Consensus 80 ~s~v~~~A~~L~~~fe~~~~~~ 101 (382)
++.||.+|..|++.|+..|...
T Consensus 108 ~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 108 DSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998765
No 41
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=1.3e-18 Score=138.65 Aligned_cols=72 Identities=40% Similarity=0.709 Sum_probs=67.0
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhhcCCCCC-CCCeEEEeCcCCCHHHHHHHHHHHHHHHH
Q 016813 197 DPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQ-DEDEIELDIEALDTETLWELDRFVTNYKK 268 (382)
Q Consensus 197 ~~~~r~mT~eEK~~L~~~I~~L~~e~l~~VI~II~~~~p~~~~-~~deiEiDid~L~~~TL~eL~~~V~~~~k 268 (382)
++.+++||++||++|+.+|+.||+++|.+||+||++++|.+.+ +++||||||+.|++.|||+|++||.+|++
T Consensus 12 e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~ 84 (90)
T 2jns_A 12 EDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLR 84 (90)
T ss_dssp TSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999864 67999999999999999999999999874
No 42
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.71 E-value=9e-17 Score=138.02 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhCCC------CccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 016813 3 NCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 76 (382)
Q Consensus 3 ~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~y 76 (382)
.+..|+..++.++. +.+|.+.++.. |+||. ++||+|.+|++||.+|.|.++.+|..||.|||.||++|
T Consensus 11 ~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~y 84 (147)
T 3iu6_A 11 LIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRM 84 (147)
T ss_dssp HHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 46778888998875 78898865554 78998 99999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016813 77 NPKDHEVHIIAEQFLARFEELFRPINEK 104 (382)
Q Consensus 77 N~~~s~v~~~A~~L~~~fe~~~~~~~~~ 104 (382)
|.+||.||..|..|+++|.+.+..+...
T Consensus 85 N~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 85 NRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999887654
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.59 E-value=1.4e-15 Score=136.18 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCCCccccCCCCccccCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCH
Q 016813 3 NCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHE 82 (382)
Q Consensus 3 ~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~eF~~Dv~Lif~Na~~yN~~~s~ 82 (382)
.+..||..|..++.+|+|+.. .++.||||.||++||+.|.|.++.+|..||+|||.||..||.+++.
T Consensus 79 ~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e 145 (183)
T 3lqh_A 79 SLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPE 145 (183)
T ss_dssp HHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChh
Confidence 367899999999999999773 2599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 016813 83 VHIIAEQFLARFEELFRPINEKLM 106 (382)
Q Consensus 83 v~~~A~~L~~~fe~~~~~~~~~~~ 106 (382)
+.+++..|+.+|+++++.++.++.
T Consensus 146 ~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 146 IKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred hhhhhhHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999988764
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=96.56 E-value=0.011 Score=48.38 Aligned_cols=62 Identities=18% Similarity=0.423 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHhcCCC-hhhHHHHHHHHHhhcCCCCCCCCeEEEeCcCCCHHHHHHHHHHHH
Q 016813 202 EMSMEEKHKLGIGLQSLP-QEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFVT 264 (382)
Q Consensus 202 ~mT~eEK~~L~~~I~~L~-~e~l~~VI~II~~~~p~~~~~~deiEiDid~L~~~TL~eL~~~V~ 264 (382)
.--.+|-+.|...|-.|. .+.|.+||++|.+- ++....+..+.+|+..|+..|+++|+.|+.
T Consensus 58 ~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~t-G~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 58 KAYLDELVELHRRLMTLRERHILQQIVNLIEET-GHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp CSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHTS-CCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc-CceeeecccccceeeccCHHHHHHHHHHHH
Confidence 345689999999999996 55699999999874 555567789999999999999999999973
No 45
>2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme transferase; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A*
Probab=21.95 E-value=27 Score=36.62 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHhh----cCCCCC-----CCCeEEEe---CcCCCHHHHHHHHHHHH
Q 016813 218 LPQEKMEQVIHILKKR----NGNLRQ-----DEDEIELD---IEALDTETLWELDRFVT 264 (382)
Q Consensus 218 L~~e~l~~VI~II~~~----~p~~~~-----~~deiEiD---id~L~~~TL~eL~~~V~ 264 (382)
+++-+|..+...|... .|.+.. ++..++.. -..++++|.+.|.+.+.
T Consensus 445 vTplqmA~ayaa~ANgG~~~~P~~v~~i~d~~G~~~~~~~~~~~vis~~~a~~v~~~L~ 503 (669)
T 2olv_A 445 FSPTQLASAFAAIANGGTYNNAHSIQKVVTRDGETIEYDHTSHKAMSDYTAYMLAEMLK 503 (669)
T ss_dssp ECHHHHHHHHHHHHTTSEEECCBCEEEEECTTSCEEECCCCEEECSCHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHcCCEEeccEEEEEEEcCCCCEeecCccccccCCHHHHHHHHHHHH
Confidence 4678888888888653 344421 22222111 13589999999888774
No 46
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=21.32 E-value=89 Score=23.70 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 016813 44 LGTVKSKLSKNLYDSPASFAADVRLTFNN 72 (382)
Q Consensus 44 L~tIk~kL~~~~Y~s~~eF~~Dv~Lif~N 72 (382)
..-|...+..|.|.|..++++|.-..+..
T Consensus 15 ~~~i~~~V~sG~Y~s~SEviR~~lR~l~~ 43 (88)
T 3kxe_C 15 QAFIDSQVADGRYGSASEVIRAGLRLLEE 43 (88)
T ss_dssp HHHHHHHHTTTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999996655544
Done!