BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016814
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1 MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
M + S++QDSVRLLAVE C + +LL +D A ++P + ++DKSWRVRYMVA++
Sbjct: 208 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 267
Query: 61 YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +FC L+ + + + IL
Sbjct: 268 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQIL 327
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS
Sbjct: 328 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 387
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 388 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 447
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
M WL D VY+IR+AA +NLK+L E+FG EWA I P+VL M +P+YL+RMT L I++
Sbjct: 448 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 507
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
L+ V G +IT +LP V+ + D V N++FNVAK LQ + PI+D S ++ ++P L +L
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567
Query: 357 TEDPDVDVRFFATQAI 372
T+D DVDV++FA +A+
Sbjct: 568 TQDQDVDVKYFAQEAL 583
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 5/362 (1%)
Query: 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 68
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 61 DEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS 120
Query: 69 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 128
P VP RL + R +A G + C + + L SD +
Sbjct: 121 PSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTP 179
Query: 129 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 188
VR A AS + A +L D +++P+F +L DE VRL + + Q++ +
Sbjct: 180 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 239
Query: 189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248
L ++P + + AED+ WRVR + + L +G L ++D +R
Sbjct: 240 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 299
Query: 249 DAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304
AA++ +K E + M I P + E++++ + + + I L+P++G +
Sbjct: 300 AAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 359
Query: 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 364
T LLP+ + KD P ++ N+ L + ++ + +++ P +VEL ED V
Sbjct: 360 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRV 419
Query: 365 RF 366
R
Sbjct: 420 RL 421
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%)
Query: 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 96
+LP IV ++D WRVR + + L +G E L + L D+ +R AA
Sbjct: 404 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAAT 463
Query: 97 GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 156
+ K E A I+P V +S D + R I ++ + G+D T + +LP
Sbjct: 464 SNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP 523
Query: 157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 216
L + D +VR N+ L ++ ++ L + P + +L +D+ V+ E +
Sbjct: 524 TVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583
Query: 217 PLLA 220
+L+
Sbjct: 584 TVLS 587
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 94/241 (39%), Gaps = 8/241 (3%)
Query: 141 MAPLLGKDATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 198
MA G D+ L PI + L++E +RLN I KL + +G++ LLP +
Sbjct: 1 MAAADGDDS----LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLT 56
Query: 199 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 258
+ D V LA+ E + + +G + L + +RD A +L+ +
Sbjct: 57 DTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 115
Query: 259 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 318
+ E P H P V + + R + S+ P + S + + L N
Sbjct: 116 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLC 174
Query: 319 KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378
D P ++ A L +++ V+ I P L D VR A +A +I +
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 234
Query: 379 M 379
+
Sbjct: 235 L 235
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1 MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
M + S++QDSVRLLAVE C + +LL +D A ++P + ++DKSWRVRYMVA++
Sbjct: 208 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 267
Query: 61 YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +FC L+ + + + IL
Sbjct: 268 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 327
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS
Sbjct: 328 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 387
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 388 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 447
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
M WL D VY+IR+AA +NLK+L E+FG EWA I P+VL M +P+YL+RMT L I++
Sbjct: 448 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 507
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
L+ V G +IT +LP V+ + D V N++FNVAK LQ + PI+D S ++ ++P L +L
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567
Query: 357 TEDPDVDVRFFATQAI 372
T+D DVDV++FA +A+
Sbjct: 568 TQDQDVDVKYFAQEAL 583
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 5/362 (1%)
Query: 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 68
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 61 DEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS 120
Query: 69 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 128
P VP RL + R +A G + C + + L SD +
Sbjct: 121 PSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTP 179
Query: 129 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 188
VR A AS + A +L D +++P+F +L DE VRL + + Q++ +
Sbjct: 180 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 239
Query: 189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248
L ++P + + AED+ WRVR + + L +G L ++D +R
Sbjct: 240 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 299
Query: 249 DAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304
AA++ +K E + M I P + E++++ + + + I L+P++G +
Sbjct: 300 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 359
Query: 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 364
T LLP+ + KD P ++ N+ L + ++ + +++ P +VEL ED V
Sbjct: 360 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRV 419
Query: 365 RF 366
R
Sbjct: 420 RL 421
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%)
Query: 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 96
+LP IV ++D WRVR + + L +G E L + L D+ +R AA
Sbjct: 404 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAAT 463
Query: 97 GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 156
+ K E A I+P V +S D + R I ++ + G+D T + +LP
Sbjct: 464 SNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP 523
Query: 157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 216
L + D +VR N+ L ++ ++ L + P + +L +D+ V+ E +
Sbjct: 524 TVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583
Query: 217 PLLA 220
+L+
Sbjct: 584 TVLS 587
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 94/241 (39%), Gaps = 8/241 (3%)
Query: 141 MAPLLGKDATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 198
MA G D+ L PI + L++E +RLN I KL + +G++ LLP +
Sbjct: 1 MAAADGDDS----LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLT 56
Query: 199 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 258
+ D V LA+ E + + +G + L + +RD A +L+ +
Sbjct: 57 DTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 115
Query: 259 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 318
+ E P H P V + + R + S+ P + S + + L N
Sbjct: 116 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLC 174
Query: 319 KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378
D P ++ A L +++ V+ I P L D VR A +A +I +
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 234
Query: 379 M 379
+
Sbjct: 235 L 235
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1 MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
M + S++QDSVRLLAVE C + +LL +D A ++P + ++DKSWRVRYMVA++
Sbjct: 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266
Query: 61 YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +FC L+ + + + IL
Sbjct: 267 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 446
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
M WL D VY+IR+AA +NLK+L E+FG EWA I P+VL M +P+YL+RMT L I++
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
L+ V G +IT +LP V+ + D V N++FNVAK LQ + PI+D S ++ ++P L +L
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
Query: 357 TEDPDVDVRFFATQAI 372
T+D DVDV++FA +A+
Sbjct: 567 TQDQDVDVKYFAQEAL 582
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 5/362 (1%)
Query: 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 68
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 60 DEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS 119
Query: 69 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 128
P VP RL + R +A G + C + + L SD +
Sbjct: 120 PSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178
Query: 129 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 188
VR A AS + A +L D +++P+F +L DE VRL + + Q++ +
Sbjct: 179 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248
L ++P + + AED+ WRVR + + L +G L ++D +R
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 298
Query: 249 DAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304
AA++ +K E + M I P + E++++ + + + I L+P++G +
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358
Query: 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 364
T LLP+ + KD P ++ N+ L + ++ + +++ P +VEL ED V
Sbjct: 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRV 418
Query: 365 RF 366
R
Sbjct: 419 RL 420
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%)
Query: 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 96
+LP IV ++D WRVR + + L +G E L + L D+ +R AA
Sbjct: 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAAT 462
Query: 97 GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 156
+ K E A I+P V +S D + R I ++ + G+D T + +LP
Sbjct: 463 SNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP 522
Query: 157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 216
L + D +VR N+ L ++ ++ L + P + +L +D+ V+ E +
Sbjct: 523 TVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Query: 217 PLLA 220
+L+
Sbjct: 583 TVLS 586
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
+ + +G + L + +RD A +L+ ++ E P H P
Sbjct: 71 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
V + + R + S+ P + S + + L N D P ++ A L
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
+++ V+ I P L D VR A +A +I ++
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1 MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
M + S++QDSVRLLAVE C + +LL +D A ++P + ++DKSWRVRYMVA++
Sbjct: 201 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 260
Query: 61 YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +FC L+ + + + IL
Sbjct: 261 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 320
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS
Sbjct: 321 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 380
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 381 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 440
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
M WL D VY+IR+AA +NLK+L E+FG EWA I P+VL M +P+YL+RMT L I++
Sbjct: 441 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 500
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
L+ V G +IT +LP V+ + D V N++FNVAK LQ + PI+D S ++ ++P L +L
Sbjct: 501 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 560
Query: 357 TEDPDVDVRFFATQAI 372
T+D DVDV++FA +A+
Sbjct: 561 TQDQDVDVKYFAQEAL 576
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 5/362 (1%)
Query: 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 68
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 54 DEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS 113
Query: 69 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 128
P VP RL + R +A G + C + + L SD +
Sbjct: 114 PSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTP 172
Query: 129 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 188
VR A AS + A +L D +++P+F +L DE VRL + + Q++ +
Sbjct: 173 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 232
Query: 189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248
L ++P + + AED+ WRVR + + L +G L ++D +R
Sbjct: 233 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 292
Query: 249 DAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304
AA++ +K E + M I P + E++++ + + + I L+P++G +
Sbjct: 293 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 352
Query: 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 364
T LLP+ + KD P ++ N+ L + ++ + +++ P +VEL ED V
Sbjct: 353 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRV 412
Query: 365 RF 366
R
Sbjct: 413 RL 414
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%)
Query: 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 96
+LP IV ++D WRVR + + L +G E L + L D+ +R AA
Sbjct: 397 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAAT 456
Query: 97 GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 156
+ K E A I+P V +S D + R I ++ + G+D T + +LP
Sbjct: 457 SNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP 516
Query: 157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 216
L + D +VR N+ L ++ ++ L + P + +L +D+ V+ E +
Sbjct: 517 TVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576
Query: 217 PLLA 220
+L+
Sbjct: 577 TVLS 580
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 6 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
+ + +G + L + +RD A +L+ ++ E P H P
Sbjct: 65 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
V + + R + S+ P + S + + L N D P ++ A L
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 183
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
+++ V+ I P L D VR A +A +I ++
Sbjct: 184 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 228
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1 MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
M + S++QDSVRLLAVE C + +LL +D A ++P + ++DKSWRVRYMVA++
Sbjct: 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266
Query: 61 YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +FC L+ + + + IL
Sbjct: 267 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQIL 326
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 446
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
M WL D VY+IR+AA +NLK+L E+FG EWA I P+VL M +P+YL+RMT L I++
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
L+ V G +IT +LP V+ + D V N++FNVAK LQ + PI+D S ++ ++P L +L
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
Query: 357 TEDPDVDVRFFATQAI 372
T+D DVDV++FA +A+
Sbjct: 567 TQDQDVDVKYFAQEAL 582
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 5/362 (1%)
Query: 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 68
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 60 DEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS 119
Query: 69 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 128
P VP RL + R +A G + C + + L SD +
Sbjct: 120 PSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178
Query: 129 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 188
VR A AS + A +L D +++P+F +L DE VRL + + Q++ +
Sbjct: 179 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248
L ++P + + AED+ WRVR + + L +G L ++D +R
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 298
Query: 249 DAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304
AA++ +K E + M I P + E++++ + + + I L+P++G +
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358
Query: 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 364
T LLP+ + KD P ++ N+ L + ++ + +++ P +VEL ED V
Sbjct: 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRV 418
Query: 365 RF 366
R
Sbjct: 419 RL 420
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%)
Query: 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 96
+LP IV ++D WRVR + + L +G E L + L D+ +R AA
Sbjct: 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAAT 462
Query: 97 GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 156
+ K E A I+P V +S D + R I ++ + G+D T + +LP
Sbjct: 463 SNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP 522
Query: 157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 216
L + D +VR N+ L ++ ++ L + P + +L +D+ V+ E +
Sbjct: 523 TVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Query: 217 PLLA 220
+L+
Sbjct: 583 TVLS 586
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
+ + +G + L + +RD A +L+ ++ E P H P
Sbjct: 71 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
V + + R + S+ P + S + + L N D P ++ A L
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
+++ V+ I P L D VR A +A +I ++
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 436 bits (1121), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1 MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
M + S++QDSVRLLAVE C + +LL +D A ++P + ++DKSWRVRYMVA++
Sbjct: 199 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 258
Query: 61 YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +FC L+ + + + IL
Sbjct: 259 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 318
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS
Sbjct: 319 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 378
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 379 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 438
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
M WL D VY+IR+AA +NLK+L E+FG EWA I P+VL M +P+YL+RMT L I++
Sbjct: 439 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 498
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
L+ V G +IT +LP V+ + D V N++FNVAK LQ + PI+D S ++ ++P L +L
Sbjct: 499 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 558
Query: 357 TEDPDVDVRFFATQAI 372
T+D DVDV++FA +A+
Sbjct: 559 TQDQDVDVKYFAQEAL 574
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 5/362 (1%)
Query: 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 68
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 52 DEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS 111
Query: 69 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 128
P VP RL + R +A G + C + + L SD +
Sbjct: 112 PSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTP 170
Query: 129 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 188
VR A AS + A +L D +++P+F +L DE VRL + + Q++ +
Sbjct: 171 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 230
Query: 189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248
L ++P + + AED+ WRVR + + L +G L ++D +R
Sbjct: 231 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 290
Query: 249 DAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304
AA++ +K E + M I P + E++++ + + + I L+P++G +
Sbjct: 291 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 350
Query: 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 364
T LLP+ + KD P ++ N+ L + ++ + +++ P +VEL ED V
Sbjct: 351 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRV 410
Query: 365 RF 366
R
Sbjct: 411 RL 412
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%)
Query: 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 96
+LP IV ++D WRVR + + L +G E L + L D+ +R AA
Sbjct: 395 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAAT 454
Query: 97 GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 156
+ K E A I+P V +S D + R I ++ + G+D T + +LP
Sbjct: 455 SNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP 514
Query: 157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 216
L + D +VR N+ L ++ ++ L + P + +L +D+ V+ E +
Sbjct: 515 TVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 574
Query: 217 PLLA 220
+L+
Sbjct: 575 TVLS 578
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 4 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 62
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
+ + +G + L + +RD A +L+ ++ E P H P
Sbjct: 63 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 122
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
V + + R + S+ P + S + + L N D P ++ A L
Sbjct: 123 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 181
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
+++ V+ I P L D VR A +A +I ++
Sbjct: 182 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 226
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 273/370 (73%), Gaps = 4/370 (1%)
Query: 7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
S++QDSVRLLAVE C + +LL +D A + P + ++DKSWRVRY VA++ EL +A
Sbjct: 207 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKA 266
Query: 67 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL 122
VGPE T+ DLVPA+ L +D EAEVR AA+ KV +FC L+ + + ILPC+KEL
Sbjct: 267 VGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFCENLSADCRENVIXSQILPCIKEL 326
Query: 123 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182
SD++QHV+SALASVI G++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS LD VN+
Sbjct: 327 VSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 386
Query: 183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242
VIGI LSQSLLPAIVELAED WRVRLAIIEY PLLA QLGV FFD+KL +LC WL D
Sbjct: 387 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVD 446
Query: 243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
VY+IR+AA +NLK+L E+FG EWA I P+VL +P+YL+R T L I++L+ V G
Sbjct: 447 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCG 506
Query: 303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
+IT LP V+ + D V N++FNVAK LQ + PI+D S ++ ++P L +LT+D DV
Sbjct: 507 QDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 566
Query: 363 DVRFFATQAI 372
DV++FA +A+
Sbjct: 567 DVKYFAQEAL 576
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 148/362 (40%), Gaps = 5/362 (1%)
Query: 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 68
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 54 DEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS 113
Query: 69 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 128
P VP RL + R +A G + C + + L SD +
Sbjct: 114 PSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTP 172
Query: 129 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 188
VR A AS + A +L D +++P F +L DE VRL + + Q++ +
Sbjct: 173 XVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQED 232
Query: 189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248
L + P + + AED+ WRVR + + L +G L +D +R
Sbjct: 233 LEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVR 292
Query: 249 DAAANNLKRLAEEFGPEWAMQHITPQVL----EMINNPHYLYRMTILRAISLLAPVMGSE 304
AA++ +K E + I Q+L E++++ + + + I L+P++G +
Sbjct: 293 AAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKD 352
Query: 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 364
T LLP+ + KD P ++ N+ L + ++ + +++ P +VEL ED V
Sbjct: 353 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRV 412
Query: 365 RF 366
R
Sbjct: 413 RL 414
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%)
Query: 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 96
+LP IV ++D WRVR + L +G E L L D+ +R AA
Sbjct: 397 LLPAIVELAEDAKWRVRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAAT 456
Query: 97 GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 156
+ K E A I+P V S D + R I ++ + G+D T + LP
Sbjct: 457 SNLKKLVEKFGKEWAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLP 516
Query: 157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 216
L D +VR N+ L ++ ++ L + P + +L +D+ V+ E +
Sbjct: 517 TVLRXAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576
Query: 217 PLLA 220
+L+
Sbjct: 577 TVLS 580
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 6 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
+ + +G + L + +RD A +L+ ++ E P H P
Sbjct: 65 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
V + + R + S+ P + S + + L N D P ++ A L
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPXVRRAAASKLG 183
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
+++ V+ I P L D VR A +A +I ++
Sbjct: 184 EFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLL 228
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 241 bits (615), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 159/218 (72%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
+ + + L++E +RLN I KL + +G++ LSQSLLPAIVELAED WRVRLAIIE
Sbjct: 9 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+
Sbjct: 69 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 372
+ PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 189 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 226
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 93/213 (43%)
Query: 8 NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
N+ +RL +++ + + L + +LP IV ++D WRVR + + L +
Sbjct: 18 NEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL 77
Query: 68 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
G E L + L D+ +R AA + K E A I+P V +S D +
Sbjct: 78 GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 137
Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
R I ++ + G+D T + +LP L + D +VR N+ L ++ ++
Sbjct: 138 YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 197
Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 220
L + P + +L +D+ V+ E + +L+
Sbjct: 198 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 230
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAG 97
+ V+++ +++ ++R +L + A+G E L+PA V L D + VR+A
Sbjct: 9 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLA--- 65
Query: 98 KVTKFCRILNPELAIQHILPCVKELSS----DSSQHVRSALASVIMGMAPLLGKDATIEQ 153
+ ++ +L +L ++ + L D +R A S + + GK+
Sbjct: 66 -IIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHAT 124
Query: 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAI 212
++P L++ D R+ + ++ +++V G D+ ++ +LP ++ +A D VR +
Sbjct: 125 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNV 183
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 87 NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
VR AA V + C +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 87 NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
VR AA V + C +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 87 NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
VR AA V + C +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 87 NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
VR AA V + C +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 87 NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
VR AA V + C +L PE AI +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
D V H+LP I ++ WR R + E GPEP ++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILE--GPEPNQLKPLVIQAMPTLIELMKD 419
Query: 87 NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
VR A V + C +L PE AI +
Sbjct: 420 PSVVVRDTTAWTVGRICELL-PEAAINDV 447
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
D V H+LP I ++ WR R + E GPEP ++ P + L +D
Sbjct: 368 DIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILE--GPEPNQLKPLVIQAXPTLIELXKD 425
Query: 87 NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
VR A V + C +L PE AI +
Sbjct: 426 PSVVVRDTTAWTVGRICELL-PEAAINDV 453
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 87 NEAEVRIAAAGKVTKFCRIL 106
VR AA V + C +L
Sbjct: 420 PSVVVRDTAAWTVGRICELL 439
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 84 LRDNEAEVRIAAAGKVTKFCR---ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 140
L D A VR A + C+ I +P++ Q + D S +VR A A I
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAI-- 152
Query: 141 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 200
++ ATI P+ ++LLKD DVR N + +N+ D+ VE
Sbjct: 153 --SVINDKATI----PLLINLLKDPNGDVR-NWAAFAININKYDNSDIRD-----CFVEX 200
Query: 201 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLQDKVY 245
+D++ VR+ I +G+ + DK L LC + ++ VY
Sbjct: 201 LQDKNEEVRIEAI---------IGLSYRKDKRVLSVLCDELKKNTVY 238
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 98 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 98 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 98 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 43 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 90
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 98 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 98 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 98 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 68
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 98 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 68
>pdb|3L9T|A Chain A, The Crystal Structure Of Smu.31 From Streptococcus Mutans
Ua159
Length = 240
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 20/107 (18%)
Query: 45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 104
S+D +WRV+ ++A E C+ + + +P L+ + R AA T+ R
Sbjct: 113 SKDNNWRVQEVLAKAFDEFCKKIEYKKA----LPIIDEWLKSSNLHTRRAA----TEGLR 164
Query: 105 IL--------NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 143
I NP AI+ I +L D S++VR ++ + + ++
Sbjct: 165 IWTNRPYFKENPNEAIRRIA----DLKEDVSEYVRKSVGNALRDISK 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,275,018
Number of Sequences: 62578
Number of extensions: 397025
Number of successful extensions: 1272
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 92
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)