Query 016814
Match_columns 382
No_of_seqs 207 out of 1385
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:03:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 2.1E-34 4.6E-39 264.8 29.6 378 2-379 281-666 (759)
2 KOG0211 Protein phosphatase 2A 100.0 4.4E-30 9.5E-35 236.5 24.9 379 2-380 242-628 (759)
3 KOG2171 Karyopherin (importin) 100.0 9.5E-25 2.1E-29 203.3 35.0 379 2-381 85-508 (1075)
4 KOG2171 Karyopherin (importin) 99.9 1.1E-23 2.5E-28 196.2 34.1 371 5-376 45-460 (1075)
5 KOG2023 Nuclear transport rece 99.9 2.8E-23 6E-28 182.4 22.8 374 5-381 98-550 (885)
6 KOG2023 Nuclear transport rece 99.9 9.1E-23 2E-27 179.1 24.5 347 33-381 87-509 (885)
7 PRK13800 putative oxidoreducta 99.9 1.4E-21 2.9E-26 190.9 27.1 275 37-374 622-896 (897)
8 PRK09687 putative lyase; Provi 99.9 1.2E-21 2.6E-26 164.6 23.0 254 76-374 24-279 (280)
9 PRK13800 putative oxidoreducta 99.9 3E-21 6.5E-26 188.5 25.5 270 3-335 627-896 (897)
10 PRK09687 putative lyase; Provi 99.9 5.1E-21 1.1E-25 160.8 21.9 255 36-335 23-279 (280)
11 KOG1241 Karyopherin (importin) 99.9 3.5E-19 7.6E-24 159.2 29.4 373 5-379 98-532 (859)
12 KOG1242 Protein containing ada 99.9 1.7E-18 3.8E-23 152.6 30.8 371 6-381 65-448 (569)
13 KOG0213 Splicing factor 3b, su 99.9 5.4E-18 1.2E-22 151.2 32.2 364 6-375 725-1140(1172)
14 KOG0213 Splicing factor 3b, su 99.8 4.4E-18 9.5E-23 151.8 29.0 358 7-376 486-1064(1172)
15 COG5181 HSH155 U2 snRNP splice 99.8 6.9E-18 1.5E-22 147.7 27.2 357 7-376 291-869 (975)
16 PF01602 Adaptin_N: Adaptin N 99.8 9.3E-18 2E-22 157.3 29.7 362 4-375 86-522 (526)
17 KOG0212 Uncharacterized conser 99.8 4.7E-18 1E-22 147.2 24.0 374 3-377 6-406 (675)
18 KOG1240 Protein kinase contain 99.8 1.2E-18 2.5E-23 162.7 21.0 294 10-319 436-745 (1431)
19 KOG1242 Protein containing ada 99.8 2.8E-17 6.1E-22 145.1 27.9 348 3-355 140-499 (569)
20 PLN03200 cellulose synthase-in 99.8 4.6E-17 9.9E-22 163.8 32.2 337 37-378 405-765 (2102)
21 KOG1241 Karyopherin (importin) 99.8 2.4E-16 5.3E-21 141.3 32.2 373 7-381 269-715 (859)
22 PLN03200 cellulose synthase-in 99.8 1.3E-16 2.9E-21 160.6 32.3 369 4-377 411-811 (2102)
23 KOG1240 Protein kinase contain 99.8 4.1E-18 8.9E-23 159.2 18.1 305 37-354 423-741 (1431)
24 KOG0212 Uncharacterized conser 99.8 1.7E-16 3.8E-21 137.7 24.8 364 11-376 57-443 (675)
25 KOG1824 TATA-binding protein-i 99.8 3.3E-15 7.2E-20 136.9 33.0 381 1-381 51-603 (1233)
26 KOG1824 TATA-binding protein-i 99.8 2.8E-15 6E-20 137.4 32.0 373 7-381 184-684 (1233)
27 PF01602 Adaptin_N: Adaptin N 99.8 6.5E-16 1.4E-20 144.9 28.9 352 10-381 19-373 (526)
28 KOG0166 Karyopherin (importin) 99.8 9E-16 1.9E-20 134.9 27.2 364 9-374 78-483 (514)
29 COG5215 KAP95 Karyopherin (imp 99.7 3.5E-14 7.6E-19 123.9 31.4 374 4-379 101-531 (858)
30 COG5181 HSH155 U2 snRNP splice 99.7 2.2E-15 4.8E-20 132.3 23.4 342 6-349 530-923 (975)
31 KOG0166 Karyopherin (importin) 99.7 4.6E-15 1E-19 130.5 24.9 339 38-378 68-437 (514)
32 PTZ00429 beta-adaptin; Provisi 99.7 1.3E-13 2.8E-18 129.7 35.9 356 3-376 111-506 (746)
33 PTZ00429 beta-adaptin; Provisi 99.7 6.1E-14 1.3E-18 131.9 32.6 355 4-378 39-398 (746)
34 KOG0915 Uncharacterized conser 99.6 2.7E-13 5.9E-18 130.3 25.5 369 10-380 970-1430(1702)
35 COG5215 KAP95 Karyopherin (imp 99.6 7.6E-12 1.7E-16 109.6 31.7 375 5-381 271-715 (858)
36 KOG0915 Uncharacterized conser 99.6 1.2E-12 2.7E-17 125.9 29.1 338 20-362 944-1330(1702)
37 KOG4224 Armadillo repeat prote 99.6 6.4E-14 1.4E-18 116.0 17.6 337 3-340 91-448 (550)
38 PF10508 Proteasom_PSMB: Prote 99.6 9.4E-12 2E-16 114.3 31.8 366 10-376 51-461 (503)
39 PF10508 Proteasom_PSMB: Prote 99.5 3E-11 6.5E-16 111.1 30.2 338 38-377 40-420 (503)
40 KOG1060 Vesicle coat complex A 99.5 7.9E-11 1.7E-15 106.9 30.8 168 3-182 41-209 (968)
41 COG1413 FOG: HEAT repeat [Ener 99.5 3.5E-11 7.6E-16 106.0 23.8 253 36-342 43-308 (335)
42 COG1413 FOG: HEAT repeat [Ener 99.5 4.9E-11 1.1E-15 105.1 24.6 248 75-376 43-303 (335)
43 COG5064 SRP1 Karyopherin (impo 99.5 1.9E-11 4E-16 100.7 19.6 340 35-375 113-494 (526)
44 PF12348 CLASP_N: CLASP N term 99.5 1E-11 2.2E-16 103.0 18.8 188 191-381 6-210 (228)
45 KOG4224 Armadillo repeat prote 99.4 1.3E-11 2.8E-16 102.5 17.9 342 35-377 84-446 (550)
46 KOG1243 Protein kinase [Genera 99.4 3.7E-12 8E-17 114.6 15.5 253 124-379 264-517 (690)
47 COG5064 SRP1 Karyopherin (impo 99.4 5.5E-12 1.2E-16 103.8 14.4 339 39-377 74-443 (526)
48 TIGR02270 conserved hypothetic 99.4 8.8E-11 1.9E-15 103.7 22.2 241 76-377 55-296 (410)
49 KOG1060 Vesicle coat complex A 99.4 4.3E-10 9.4E-15 102.2 26.4 285 2-301 113-460 (968)
50 TIGR02270 conserved hypothetic 99.4 2.3E-10 5E-15 101.1 21.0 208 38-298 88-295 (410)
51 KOG2259 Uncharacterized conser 99.3 1.7E-09 3.7E-14 96.6 25.5 250 76-336 199-473 (823)
52 KOG2259 Uncharacterized conser 99.3 2.9E-10 6.3E-15 101.4 19.8 312 11-341 172-514 (823)
53 KOG1243 Protein kinase [Genera 99.3 4E-11 8.8E-16 108.1 14.3 253 9-263 266-518 (690)
54 KOG1820 Microtubule-associated 99.3 4.1E-10 8.9E-15 106.3 20.4 187 191-381 252-447 (815)
55 PF12348 CLASP_N: CLASP N term 99.3 2.8E-10 6E-15 94.5 17.3 188 75-265 7-211 (228)
56 COG5240 SEC21 Vesicle coat com 99.3 1.1E-09 2.5E-14 96.4 21.1 291 74-376 263-554 (898)
57 KOG1061 Vesicle coat complex A 99.3 2.1E-09 4.6E-14 98.1 21.9 349 6-369 95-520 (734)
58 KOG1062 Vesicle coat complex A 99.2 1.6E-08 3.4E-13 92.7 26.8 347 10-370 120-574 (866)
59 PF12460 MMS19_C: RNAPII trans 99.2 4.3E-07 9.4E-12 82.1 35.0 340 12-356 17-414 (415)
60 COG5096 Vesicle coat complex, 99.2 1.2E-07 2.6E-12 88.5 29.8 265 6-282 28-296 (757)
61 COG5240 SEC21 Vesicle coat com 99.2 8.1E-09 1.8E-13 91.1 20.3 293 32-337 260-554 (898)
62 KOG1061 Vesicle coat complex A 99.1 1.8E-08 4E-13 92.2 22.2 327 34-377 47-379 (734)
63 KOG1943 Beta-tubulin folding c 99.1 1.3E-06 2.9E-11 82.9 33.8 374 4-380 348-840 (1133)
64 KOG1059 Vesicle coat complex A 99.1 1.8E-06 4E-11 78.6 31.8 358 4-375 151-575 (877)
65 KOG1991 Nuclear transport rece 99.1 2.6E-06 5.6E-11 80.4 33.4 129 249-378 390-533 (1010)
66 KOG1020 Sister chromatid cohes 99.1 2.8E-06 6.1E-11 83.4 33.9 361 2-364 821-1280(1692)
67 KOG1943 Beta-tubulin folding c 99.1 4.2E-07 9.2E-12 86.2 27.4 338 34-374 339-744 (1133)
68 KOG1248 Uncharacterized conser 99.0 5.6E-06 1.2E-10 79.7 34.4 335 10-346 530-906 (1176)
69 PF05804 KAP: Kinesin-associat 99.0 2.7E-06 5.9E-11 80.2 30.6 358 10-378 263-650 (708)
70 KOG1058 Vesicle coat complex C 99.0 1.4E-06 3.1E-11 79.6 26.7 352 6-379 108-465 (948)
71 KOG1248 Uncharacterized conser 99.0 1.1E-05 2.4E-10 77.7 33.2 344 36-381 518-902 (1176)
72 KOG1059 Vesicle coat complex A 98.9 1.5E-06 3.2E-11 79.2 25.4 221 32-260 140-365 (877)
73 COG5096 Vesicle coat complex, 98.9 8.8E-06 1.9E-10 76.4 31.0 265 6-280 101-404 (757)
74 PF12755 Vac14_Fab1_bd: Vacuol 98.9 9E-09 1.9E-13 71.3 8.3 88 13-101 2-93 (97)
75 PF12755 Vac14_Fab1_bd: Vacuol 98.9 9.2E-09 2E-13 71.3 8.2 84 52-135 2-89 (97)
76 PF12460 MMS19_C: RNAPII trans 98.9 1.9E-05 4.2E-10 71.4 31.7 333 39-377 2-394 (415)
77 KOG1062 Vesicle coat complex A 98.9 1.7E-06 3.6E-11 79.8 23.7 95 44-144 115-209 (866)
78 KOG1820 Microtubule-associated 98.9 3.2E-07 6.9E-12 87.2 19.6 201 28-232 245-454 (815)
79 KOG2137 Protein kinase [Signal 98.9 2.9E-07 6.3E-12 84.1 18.4 232 126-360 285-520 (700)
80 KOG1020 Sister chromatid cohes 98.9 3.3E-05 7.3E-10 76.3 33.0 339 34-376 814-1253(1692)
81 PF12717 Cnd1: non-SMC mitotic 98.8 7.6E-07 1.6E-11 70.4 17.5 112 10-124 1-112 (178)
82 KOG2137 Protein kinase [Signal 98.8 6E-07 1.3E-11 82.1 18.8 232 88-322 286-521 (700)
83 PF13646 HEAT_2: HEAT repeats; 98.8 2.2E-08 4.8E-13 69.4 7.0 85 39-139 2-88 (88)
84 KOG2032 Uncharacterized conser 98.8 1.9E-05 4.2E-10 69.2 26.0 256 114-376 258-530 (533)
85 PF13646 HEAT_2: HEAT repeats; 98.8 5.1E-08 1.1E-12 67.5 8.1 86 77-178 1-88 (88)
86 PF05918 API5: Apoptosis inhib 98.8 7.1E-06 1.5E-10 74.6 23.3 287 9-302 34-348 (556)
87 PF12717 Cnd1: non-SMC mitotic 98.7 1.8E-06 3.8E-11 68.3 17.2 112 166-281 1-112 (178)
88 KOG1058 Vesicle coat complex C 98.7 2.8E-05 6.1E-10 71.5 26.3 355 6-373 29-421 (948)
89 KOG0567 HEAT repeat-containing 98.7 5.9E-06 1.3E-10 66.5 19.5 91 270-376 187-279 (289)
90 PF04826 Arm_2: Armadillo-like 98.7 1.9E-06 4.2E-11 71.4 17.4 185 41-225 17-209 (254)
91 KOG1077 Vesicle coat complex A 98.7 5.6E-05 1.2E-09 69.1 26.7 294 10-312 124-448 (938)
92 PF05804 KAP: Kinesin-associat 98.7 2.5E-05 5.4E-10 73.9 25.4 344 2-355 295-676 (708)
93 KOG0567 HEAT repeat-containing 98.7 2.5E-06 5.4E-11 68.6 15.8 220 77-336 38-278 (289)
94 KOG2032 Uncharacterized conser 98.7 1.6E-05 3.5E-10 69.6 21.9 247 6-260 267-531 (533)
95 KOG2956 CLIP-associating prote 98.7 2.3E-06 5.1E-11 74.2 16.3 191 2-200 292-491 (516)
96 PF04826 Arm_2: Armadillo-like 98.7 5.3E-06 1.2E-10 68.8 18.0 205 164-368 24-253 (254)
97 cd00020 ARM Armadillo/beta-cat 98.6 1.7E-07 3.7E-12 69.2 8.4 108 35-142 6-119 (120)
98 KOG1078 Vesicle coat complex C 98.6 4E-05 8.7E-10 70.9 24.7 287 74-376 244-531 (865)
99 KOG4413 26S proteasome regulat 98.6 0.00015 3.2E-09 60.5 25.1 319 17-338 63-439 (524)
100 KOG1991 Nuclear transport rece 98.6 0.00065 1.4E-08 64.9 33.8 353 15-372 390-795 (1010)
101 cd00020 ARM Armadillo/beta-cat 98.6 5.8E-07 1.3E-11 66.3 9.9 107 231-337 7-119 (120)
102 KOG4413 26S proteasome regulat 98.6 0.00024 5.3E-09 59.3 25.2 320 54-377 61-439 (524)
103 KOG1078 Vesicle coat complex C 98.5 4.6E-05 1E-09 70.5 21.9 288 34-337 243-531 (865)
104 PF05918 API5: Apoptosis inhib 98.5 0.0001 2.3E-09 67.3 23.8 270 77-357 25-315 (556)
105 KOG2025 Chromosome condensatio 98.5 9.4E-05 2E-09 67.8 23.2 205 150-374 82-291 (892)
106 KOG2025 Chromosome condensatio 98.5 4.7E-05 1E-09 69.7 21.1 172 71-257 81-256 (892)
107 KOG1077 Vesicle coat complex A 98.5 0.00023 5E-09 65.3 25.4 310 33-353 108-450 (938)
108 KOG4535 HEAT and armadillo rep 98.5 9.7E-06 2.1E-10 70.7 15.1 290 11-302 269-606 (728)
109 KOG2062 26S proteasome regulat 98.5 5.4E-05 1.2E-09 69.6 20.4 158 114-284 519-679 (929)
110 PF05004 IFRD: Interferon-rela 98.5 9.4E-05 2E-09 63.7 21.1 179 202-380 53-260 (309)
111 KOG0168 Putative ubiquitin fus 98.4 0.001 2.2E-08 62.6 27.9 183 2-184 173-366 (1051)
112 PF05004 IFRD: Interferon-rela 98.4 0.00034 7.4E-09 60.3 23.7 202 160-361 50-286 (309)
113 KOG4653 Uncharacterized conser 98.4 7.4E-05 1.6E-09 69.9 20.3 181 119-304 732-923 (982)
114 KOG2062 26S proteasome regulat 98.4 4.3E-05 9.3E-10 70.2 18.5 261 76-363 414-680 (929)
115 KOG2956 CLIP-associating prote 98.4 3.2E-05 6.9E-10 67.4 16.8 193 35-232 286-488 (516)
116 KOG4653 Uncharacterized conser 98.4 0.00013 2.8E-09 68.4 21.6 220 156-380 730-967 (982)
117 KOG1949 Uncharacterized conser 98.4 6.7E-05 1.5E-09 68.6 19.1 146 114-259 174-330 (1005)
118 KOG4535 HEAT and armadillo rep 98.4 0.0006 1.3E-08 60.0 23.5 364 9-380 8-465 (728)
119 KOG2274 Predicted importin 9 [ 98.4 0.0027 5.8E-08 60.3 30.9 177 201-378 500-690 (1005)
120 COG5098 Chromosome condensatio 98.4 0.0022 4.8E-08 59.1 27.7 141 231-377 892-1037(1128)
121 KOG1949 Uncharacterized conser 98.3 0.00038 8.1E-09 64.0 22.5 146 76-221 175-331 (1005)
122 PF13001 Ecm29: Proteasome sta 98.3 0.00045 9.7E-09 64.0 23.9 146 230-375 318-486 (501)
123 PF14500 MMS19_N: Dos2-interac 98.3 0.00044 9.5E-09 58.0 21.1 226 3-232 5-248 (262)
124 KOG1293 Proteins containing ar 98.3 0.0027 5.9E-08 58.1 28.6 134 243-376 389-532 (678)
125 PF13513 HEAT_EZ: HEAT-like re 98.3 1.3E-06 2.9E-11 54.1 4.5 52 284-335 1-54 (55)
126 PF14500 MMS19_N: Dos2-interac 98.3 0.00099 2.2E-08 55.8 22.4 227 119-351 4-250 (262)
127 KOG0413 Uncharacterized conser 98.2 0.0034 7.4E-08 60.0 27.1 99 5-103 585-684 (1529)
128 KOG1992 Nuclear export recepto 98.2 0.0021 4.6E-08 60.3 24.2 253 10-264 375-672 (960)
129 PF13513 HEAT_EZ: HEAT-like re 98.2 3E-06 6.5E-11 52.5 4.4 52 89-140 1-54 (55)
130 KOG1992 Nuclear export recepto 98.2 0.0061 1.3E-07 57.4 27.1 364 10-377 52-527 (960)
131 PF02985 HEAT: HEAT repeat; I 98.2 3.4E-06 7.3E-11 45.0 3.7 28 77-104 2-29 (31)
132 COG5218 YCG1 Chromosome conden 98.1 0.00019 4.1E-09 64.5 16.0 104 74-179 90-196 (885)
133 KOG1525 Sister chromatid cohes 98.1 0.0015 3.3E-08 65.6 23.8 327 4-339 57-406 (1266)
134 PLN03076 ARF guanine nucleotid 98.1 0.0069 1.5E-07 63.6 28.8 304 14-317 1109-1510(1780)
135 KOG1967 DNA repair/transcripti 98.1 0.00018 3.9E-09 67.9 15.8 148 148-295 862-1020(1030)
136 COG5218 YCG1 Chromosome conden 98.1 0.0023 4.9E-08 57.9 21.8 171 150-335 88-263 (885)
137 PF12719 Cnd3: Nuclear condens 98.1 0.0023 5E-08 55.3 21.5 165 37-203 28-208 (298)
138 KOG1293 Proteins containing ar 98.1 0.0084 1.8E-07 55.1 25.1 135 205-339 390-534 (678)
139 PF12719 Cnd3: Nuclear condens 98.1 0.0014 3E-08 56.6 19.8 166 75-242 26-208 (298)
140 KOG1967 DNA repair/transcripti 98.0 8.7E-05 1.9E-09 70.0 12.7 149 229-377 865-1024(1030)
141 KOG0946 ER-Golgi vesicle-tethe 98.0 0.012 2.7E-07 55.2 27.9 288 11-298 37-398 (970)
142 KOG1525 Sister chromatid cohes 98.0 0.013 2.8E-07 59.3 27.9 335 33-377 42-405 (1266)
143 PF02985 HEAT: HEAT repeat; I 98.0 8.5E-06 1.8E-10 43.4 3.6 30 37-66 1-30 (31)
144 COG5116 RPN2 26S proteasome re 98.0 4.4E-05 9.6E-10 68.2 9.8 152 2-166 521-675 (926)
145 KOG0168 Putative ubiquitin fus 98.0 0.0036 7.9E-08 59.0 22.0 187 37-224 169-367 (1051)
146 KOG0392 SNF2 family DNA-depend 97.9 0.00049 1.1E-08 67.2 16.0 181 158-339 133-326 (1549)
147 PF01347 Vitellogenin_N: Lipop 97.9 0.0028 6.1E-08 61.1 21.3 164 191-372 430-617 (618)
148 PF08506 Cse1: Cse1; InterPro 97.9 0.0029 6.2E-08 56.0 19.3 126 244-372 224-370 (370)
149 KOG0413 Uncharacterized conser 97.9 0.0043 9.3E-08 59.4 20.9 210 153-375 472-683 (1529)
150 PLN03076 ARF guanine nucleotid 97.9 0.033 7.2E-07 58.7 28.8 290 52-342 1108-1493(1780)
151 KOG2933 Uncharacterized conser 97.8 0.0021 4.6E-08 53.5 15.9 136 200-340 96-236 (334)
152 COG5116 RPN2 26S proteasome re 97.8 0.0012 2.6E-08 59.4 15.1 247 89-362 425-676 (926)
153 KOG0414 Chromosome condensatio 97.8 0.0024 5.2E-08 62.3 17.1 167 146-321 912-1083(1251)
154 PF13001 Ecm29: Proteasome sta 97.7 0.022 4.7E-07 53.1 23.0 146 192-338 319-488 (501)
155 PF08506 Cse1: Cse1; InterPro 97.7 0.016 3.4E-07 51.4 20.6 126 205-333 224-370 (370)
156 smart00638 LPD_N Lipoprotein N 97.7 0.01 2.2E-07 56.6 21.0 161 153-332 393-572 (574)
157 KOG1517 Guanine nucleotide bin 97.7 0.0018 3.9E-08 62.4 15.3 205 14-220 487-731 (1387)
158 KOG2933 Uncharacterized conser 97.7 0.0012 2.6E-08 54.9 12.5 171 76-251 89-268 (334)
159 KOG1822 Uncharacterized conser 97.7 0.095 2.1E-06 54.4 28.7 216 4-219 883-1125(2067)
160 KOG2011 Sister chromatid cohes 97.7 0.025 5.5E-07 55.6 22.5 231 90-335 170-432 (1048)
161 PF01347 Vitellogenin_N: Lipop 97.6 0.01 2.2E-07 57.3 19.8 250 51-333 340-617 (618)
162 KOG2274 Predicted importin 9 [ 97.6 0.074 1.6E-06 51.1 30.5 241 76-319 450-718 (1005)
163 smart00638 LPD_N Lipoprotein N 97.6 0.018 4E-07 54.9 20.6 217 128-372 340-573 (574)
164 KOG2022 Nuclear transport rece 97.5 0.09 2E-06 50.4 31.8 363 12-380 439-870 (982)
165 KOG0414 Chromosome condensatio 97.5 0.0038 8.2E-08 61.0 14.0 147 223-375 911-1062(1251)
166 KOG1822 Uncharacterized conser 97.4 0.22 4.8E-06 51.9 25.7 234 106-339 868-1128(2067)
167 COG5656 SXM1 Importin, protein 97.4 0.12 2.6E-06 48.7 28.0 303 13-318 432-775 (970)
168 PF11865 DUF3385: Domain of un 97.4 0.0016 3.4E-08 50.2 8.8 137 191-338 9-157 (160)
169 PF10363 DUF2435: Protein of u 97.3 0.0059 1.3E-07 41.9 9.9 81 198-283 9-90 (92)
170 KOG1517 Guanine nucleotide bin 97.3 0.04 8.6E-07 53.7 18.2 225 35-262 471-734 (1387)
171 KOG2021 Nuclear mRNA export fa 97.3 0.17 3.7E-06 47.8 29.0 293 48-343 205-569 (980)
172 cd00256 VATPase_H VATPase_H, r 97.3 0.13 2.9E-06 46.2 25.6 290 77-377 103-425 (429)
173 KOG2160 Armadillo/beta-catenin 97.2 0.052 1.1E-06 46.6 16.8 174 204-377 95-282 (342)
174 PF12074 DUF3554: Domain of un 97.2 0.06 1.3E-06 47.6 18.1 106 13-123 3-112 (339)
175 PF10363 DUF2435: Protein of u 97.2 0.0045 9.7E-08 42.5 8.4 65 79-143 7-72 (92)
176 PF10274 ParcG: Parkin co-regu 97.1 0.022 4.8E-07 44.3 12.5 114 230-343 37-169 (183)
177 PF01603 B56: Protein phosphat 97.1 0.21 4.5E-06 45.3 22.3 256 85-343 100-374 (409)
178 cd00256 VATPase_H VATPase_H, r 97.1 0.2 4.4E-06 45.1 23.7 175 8-182 65-258 (429)
179 PF13251 DUF4042: Domain of un 97.1 0.027 5.8E-07 44.2 12.8 26 236-261 45-70 (182)
180 cd08050 TAF6 TATA Binding Prot 97.1 0.018 3.9E-07 50.6 13.2 139 153-298 178-339 (343)
181 PF13251 DUF4042: Domain of un 97.1 0.021 4.6E-07 44.8 12.1 28 13-40 2-32 (182)
182 COG5098 Chromosome condensatio 97.0 0.28 6.1E-06 46.0 27.1 106 77-182 301-415 (1128)
183 KOG0946 ER-Golgi vesicle-tethe 97.0 0.32 6.9E-06 46.3 25.1 281 76-376 23-345 (970)
184 KOG2213 Apoptosis inhibitor 5/ 97.0 0.21 4.6E-06 43.4 20.8 35 245-280 255-289 (460)
185 PF08161 NUC173: NUC173 domain 97.0 0.04 8.7E-07 44.1 13.1 165 207-375 15-197 (198)
186 KOG4524 Uncharacterized conser 97.0 0.42 9.2E-06 46.6 22.2 93 269-361 802-902 (1014)
187 PF11864 DUF3384: Domain of un 96.9 0.33 7.2E-06 44.9 30.4 266 11-283 4-314 (464)
188 PF12074 DUF3554: Domain of un 96.9 0.06 1.3E-06 47.6 15.5 221 53-281 4-255 (339)
189 PF10274 ParcG: Parkin co-regu 96.9 0.031 6.6E-07 43.6 11.4 112 269-380 37-167 (183)
190 PF12054 DUF3535: Domain of un 96.9 0.31 6.8E-06 44.5 19.5 79 47-125 98-179 (441)
191 PF10521 DUF2454: Protein of u 96.9 0.018 3.9E-07 49.2 11.1 135 31-165 114-277 (282)
192 COG5656 SXM1 Importin, protein 96.8 0.45 9.7E-06 45.1 30.4 339 16-356 389-774 (970)
193 PF08713 DNA_alkylation: DNA a 96.8 0.069 1.5E-06 43.7 13.7 133 36-183 51-185 (213)
194 PF14664 RICTOR_N: Rapamycin-i 96.7 0.36 7.8E-06 43.0 18.5 213 5-220 34-268 (371)
195 PF12530 DUF3730: Protein of u 96.7 0.28 6.2E-06 40.7 20.2 194 122-323 9-217 (234)
196 KOG2011 Sister chromatid cohes 96.7 0.71 1.5E-05 46.0 21.3 243 51-296 170-432 (1048)
197 PF11865 DUF3385: Domain of un 96.7 0.027 5.9E-07 43.5 9.8 146 229-379 8-159 (160)
198 KOG0392 SNF2 family DNA-depend 96.6 0.037 8E-07 54.9 12.3 167 209-381 750-929 (1549)
199 PF03224 V-ATPase_H_N: V-ATPas 96.5 0.48 1E-05 41.4 19.7 210 146-365 69-302 (312)
200 KOG1993 Nuclear transport rece 96.5 0.84 1.8E-05 43.7 22.5 170 110-282 484-667 (978)
201 cd08050 TAF6 TATA Binding Prot 96.5 0.064 1.4E-06 47.2 12.1 137 194-337 180-339 (343)
202 KOG2081 Nuclear transport regu 96.4 0.26 5.6E-06 45.0 15.4 126 12-143 367-495 (559)
203 KOG1048 Neural adherens juncti 96.4 0.95 2.1E-05 43.2 23.1 335 37-374 234-681 (717)
204 PF03378 CAS_CSE1: CAS/CSE pro 96.4 0.74 1.6E-05 42.0 23.3 274 47-323 41-353 (435)
205 PF01603 B56: Protein phosphat 96.4 0.75 1.6E-05 41.8 21.1 251 45-299 99-370 (409)
206 KOG2160 Armadillo/beta-catenin 96.4 0.58 1.3E-05 40.4 22.9 177 87-263 95-285 (342)
207 KOG1851 Uncharacterized conser 96.3 1.6 3.5E-05 45.1 22.3 149 230-380 1525-1681(1710)
208 PF08389 Xpo1: Exportin 1-like 96.3 0.16 3.4E-06 38.6 12.3 51 168-220 3-53 (148)
209 PF12530 DUF3730: Protein of u 96.3 0.51 1.1E-05 39.2 19.5 138 40-183 5-152 (234)
210 PF12231 Rif1_N: Rap1-interact 96.3 0.79 1.7E-05 41.1 27.1 139 127-266 59-210 (372)
211 PF04118 Dopey_N: Dopey, N-ter 96.3 0.64 1.4E-05 40.0 19.0 175 195-374 57-251 (307)
212 PF10521 DUF2454: Protein of u 96.3 0.16 3.4E-06 43.5 13.1 131 191-321 118-277 (282)
213 PF07571 DUF1546: Protein of u 96.2 0.03 6.5E-07 38.6 6.6 68 242-313 17-88 (92)
214 KOG2229 Protein required for a 96.1 1 2.3E-05 40.7 23.5 96 32-129 16-115 (616)
215 PF08167 RIX1: rRNA processing 96.0 0.41 8.8E-06 37.3 13.2 110 230-341 24-146 (165)
216 KOG2973 Uncharacterized conser 95.9 0.91 2E-05 38.4 19.0 58 320-377 255-315 (353)
217 KOG2549 Transcription initiati 95.9 0.51 1.1E-05 43.1 14.6 139 154-299 208-370 (576)
218 PF08569 Mo25: Mo25-like; Int 95.9 1.1 2.4E-05 39.2 20.6 188 73-262 74-285 (335)
219 PF07571 DUF1546: Protein of u 95.8 0.046 1E-06 37.6 6.5 71 46-120 16-90 (92)
220 KOG4500 Rho/Rac GTPase guanine 95.7 1.4 3E-05 39.2 28.4 108 230-337 314-430 (604)
221 cd03568 VHS_STAM VHS domain fa 95.7 0.32 6.8E-06 36.8 11.0 98 45-148 13-115 (144)
222 KOG2213 Apoptosis inhibitor 5/ 95.7 1.3 2.8E-05 38.8 21.4 68 51-124 39-106 (460)
223 KOG2549 Transcription initiati 95.7 0.71 1.5E-05 42.2 14.6 139 115-260 208-370 (576)
224 KOG2973 Uncharacterized conser 95.6 1.2 2.6E-05 37.7 18.2 100 41-143 8-111 (353)
225 KOG0889 Histone acetyltransfer 95.5 5.7 0.00012 45.0 26.9 282 75-357 984-1328(3550)
226 PF03224 V-ATPase_H_N: V-ATPas 95.5 0.68 1.5E-05 40.4 14.2 143 234-376 108-268 (312)
227 PF05536 Neurochondrin: Neuroc 95.5 2.3 4.9E-05 40.2 23.4 176 127-305 70-267 (543)
228 PF12765 Cohesin_HEAT: HEAT re 95.5 0.015 3.3E-07 33.2 2.6 25 74-98 17-41 (42)
229 PF03378 CAS_CSE1: CAS/CSE pro 95.4 2 4.4E-05 39.2 21.8 212 127-343 43-277 (435)
230 KOG0889 Histone acetyltransfer 95.4 3.1 6.7E-05 46.9 20.5 152 230-381 983-1159(3550)
231 PF08389 Xpo1: Exportin 1-like 95.4 0.33 7.2E-06 36.8 10.6 55 11-67 2-56 (148)
232 PF12054 DUF3535: Domain of un 95.4 2 4.4E-05 39.4 17.0 79 88-166 100-181 (441)
233 cd03568 VHS_STAM VHS domain fa 95.4 0.29 6.3E-06 37.0 9.8 97 240-342 13-114 (144)
234 KOG1993 Nuclear transport rece 95.3 2.9 6.2E-05 40.3 28.2 285 9-297 499-810 (978)
235 PF12830 Nipped-B_C: Sister ch 95.2 1.3 2.7E-05 35.4 14.9 70 35-106 7-76 (187)
236 KOG2081 Nuclear transport regu 95.1 2.7 5.8E-05 38.7 31.7 293 75-376 153-494 (559)
237 KOG2149 Uncharacterized conser 95.1 0.58 1.3E-05 41.1 11.9 107 198-304 64-175 (393)
238 KOG2149 Uncharacterized conser 95.1 0.8 1.7E-05 40.3 12.6 112 76-187 59-175 (393)
239 cd03567 VHS_GGA VHS domain fam 95.0 0.74 1.6E-05 34.5 10.8 96 240-341 14-119 (139)
240 KOG1851 Uncharacterized conser 94.9 2.2 4.7E-05 44.3 16.7 150 191-342 1525-1682(1710)
241 KOG4500 Rho/Rac GTPase guanine 94.8 2.8 6.1E-05 37.4 21.8 331 44-374 50-428 (604)
242 PF08713 DNA_alkylation: DNA a 94.8 1.8 4E-05 35.2 15.2 133 153-300 51-185 (213)
243 COG5095 TAF6 Transcription ini 94.8 1.3 2.9E-05 37.3 12.6 132 238-376 205-358 (450)
244 cd03569 VHS_Hrs_Vps27p VHS dom 94.8 1.1 2.3E-05 33.9 11.4 97 46-148 18-119 (142)
245 cd03569 VHS_Hrs_Vps27p VHS dom 94.7 1.1 2.5E-05 33.7 11.4 72 270-341 41-117 (142)
246 PF14664 RICTOR_N: Rapamycin-i 94.7 3 6.5E-05 37.3 25.8 297 76-379 26-366 (371)
247 PF00514 Arm: Armadillo/beta-c 94.5 0.077 1.7E-06 30.1 3.8 29 75-103 12-40 (41)
248 COG5234 CIN1 Beta-tubulin fold 94.5 2.5 5.5E-05 40.1 15.0 319 7-339 206-579 (993)
249 PF08167 RIX1: rRNA processing 94.5 1.7 3.8E-05 33.8 14.7 111 191-303 24-147 (165)
250 PF08161 NUC173: NUC173 domain 94.5 2 4.4E-05 34.4 14.5 28 308-336 170-197 (198)
251 cd03561 VHS VHS domain family; 94.5 0.73 1.6E-05 34.4 9.9 73 309-381 37-116 (133)
252 KOG2005 26S proteasome regulat 94.5 4.4 9.6E-05 38.3 18.2 284 38-342 417-708 (878)
253 PF14225 MOR2-PAG1_C: Cell mor 94.5 2.6 5.6E-05 35.5 16.3 140 232-380 112-257 (262)
254 KOG2022 Nuclear transport rece 94.5 5.3 0.00012 39.1 31.0 327 11-342 480-871 (982)
255 KOG0891 DNA-dependent protein 94.4 10 0.00022 42.2 25.2 177 3-182 487-719 (2341)
256 PF11698 V-ATPase_H_C: V-ATPas 94.3 0.56 1.2E-05 33.8 8.4 68 231-298 43-114 (119)
257 cd03567 VHS_GGA VHS domain fam 94.2 1.7 3.8E-05 32.5 11.7 97 45-147 14-120 (139)
258 smart00288 VHS Domain present 94.1 1.3 2.8E-05 33.0 10.4 97 45-147 13-115 (133)
259 KOG2021 Nuclear mRNA export fa 94.0 6.1 0.00013 38.0 34.5 286 88-380 206-567 (980)
260 PF12830 Nipped-B_C: Sister ch 94.0 2.6 5.6E-05 33.6 14.0 68 74-145 7-76 (187)
261 PF11701 UNC45-central: Myosin 93.9 0.88 1.9E-05 35.0 9.5 131 242-373 16-155 (157)
262 cd03572 ENTH_epsin_related ENT 93.9 0.59 1.3E-05 34.0 7.9 69 39-109 4-72 (122)
263 PF05536 Neurochondrin: Neuroc 93.8 6.2 0.00013 37.4 27.9 175 89-266 71-267 (543)
264 COG5234 CIN1 Beta-tubulin fold 93.7 3.5 7.6E-05 39.1 14.2 321 46-377 206-578 (993)
265 COG5095 TAF6 Transcription ini 93.7 3.8 8.2E-05 34.7 13.5 53 246-298 302-358 (450)
266 PF00790 VHS: VHS domain; Int 93.7 0.73 1.6E-05 34.7 8.6 74 269-342 41-122 (140)
267 KOG0891 DNA-dependent protein 93.6 4.9 0.00011 44.5 17.0 247 83-337 489-762 (2341)
268 KOG4524 Uncharacterized conser 93.6 8.4 0.00018 38.2 18.6 93 230-322 802-902 (1014)
269 KOG0803 Predicted E3 ubiquitin 93.6 11 0.00024 39.4 20.5 237 42-280 47-330 (1312)
270 KOG1789 Endocytosis protein RM 93.5 9.3 0.0002 38.6 20.1 148 16-164 1744-1909(2235)
271 PF00514 Arm: Armadillo/beta-c 93.5 0.15 3.2E-06 28.9 3.6 30 347-376 11-40 (41)
272 KOG2759 Vacuolar H+-ATPase V1 93.5 5.3 0.00012 35.5 25.1 69 309-377 366-438 (442)
273 PF11698 V-ATPase_H_C: V-ATPas 93.4 0.27 5.9E-06 35.4 5.5 67 115-181 44-114 (119)
274 PF12765 Cohesin_HEAT: HEAT re 93.4 0.13 2.8E-06 29.4 3.1 40 21-60 3-42 (42)
275 PF14868 DUF4487: Domain of un 93.3 7.3 0.00016 36.8 22.3 82 221-303 470-556 (559)
276 PF08767 CRM1_C: CRM1 C termin 93.3 5.2 0.00011 35.0 20.0 136 207-342 42-198 (319)
277 smart00288 VHS Domain present 93.3 1.1 2.4E-05 33.3 8.9 73 269-341 36-114 (133)
278 PF00790 VHS: VHS domain; Int 93.3 1.6 3.5E-05 32.9 9.9 74 74-147 41-122 (140)
279 PF08767 CRM1_C: CRM1 C termin 93.2 5.3 0.00012 34.9 22.4 135 90-225 42-198 (319)
280 cd03561 VHS VHS domain family; 93.2 1.9 4.2E-05 32.1 10.1 96 46-147 14-116 (133)
281 PF08623 TIP120: TATA-binding 93.1 0.34 7.4E-06 37.4 6.0 58 86-144 38-95 (169)
282 PF11701 UNC45-central: Myosin 93.0 1.5 3.2E-05 33.8 9.5 116 86-202 16-138 (157)
283 PF08569 Mo25: Mo25-like; Int 92.9 6.3 0.00014 34.7 19.8 181 191-377 75-283 (335)
284 KOG2005 26S proteasome regulat 92.8 8.4 0.00018 36.6 15.1 275 7-301 425-706 (878)
285 PF08064 UME: UME (NUC010) dom 92.7 2.6 5.7E-05 30.0 10.6 62 204-267 27-90 (107)
286 cd06561 AlkD_like A new struct 92.5 4.6 0.0001 32.4 13.3 64 117-183 108-171 (197)
287 PF08623 TIP120: TATA-binding 92.0 0.54 1.2E-05 36.4 5.8 63 46-109 37-99 (169)
288 COG5101 CRM1 Importin beta-rel 91.9 11 0.00025 35.5 23.0 158 70-227 476-654 (1053)
289 cd07064 AlkD_like_1 A new stru 91.8 6.1 0.00013 32.1 17.3 133 36-183 46-180 (208)
290 cd03565 VHS_Tom1 VHS domain fa 91.6 2.9 6.2E-05 31.5 9.3 97 240-342 14-119 (141)
291 KOG2153 Protein involved in th 91.6 12 0.00027 35.3 24.6 108 76-183 211-354 (704)
292 PF04118 Dopey_N: Dopey, N-ter 91.6 8.5 0.00018 33.3 22.5 179 76-260 55-254 (307)
293 PF12397 U3snoRNP10: U3 small 91.4 3.7 7.9E-05 30.0 9.6 35 112-146 4-39 (121)
294 PF08064 UME: UME (NUC010) dom 91.3 3.3 7.1E-05 29.5 8.9 59 88-148 28-88 (107)
295 KOG0803 Predicted E3 ubiquitin 91.3 22 0.00047 37.4 21.1 245 79-340 45-306 (1312)
296 COG5101 CRM1 Importin beta-rel 90.9 15 0.00032 34.9 23.6 72 76-147 571-652 (1053)
297 cd03565 VHS_Tom1 VHS domain fa 90.7 5.8 0.00013 29.9 10.6 98 45-148 14-120 (141)
298 KOG2122 Beta-catenin-binding p 90.3 27 0.00059 36.9 16.6 293 7-301 248-603 (2195)
299 PF14225 MOR2-PAG1_C: Cell mor 90.0 11 0.00024 31.9 17.8 138 152-298 110-253 (262)
300 KOG2122 Beta-catenin-binding p 89.5 31 0.00068 36.5 21.5 70 308-377 529-601 (2195)
301 COG2733 Predicted membrane pro 89.3 15 0.00032 32.5 22.5 88 169-260 127-214 (415)
302 COG5369 Uncharacterized conser 89.1 15 0.00033 34.0 12.9 146 193-338 432-594 (743)
303 smart00185 ARM Armadillo/beta- 88.6 0.85 1.8E-05 25.4 3.5 28 76-103 13-40 (41)
304 KOG4646 Uncharacterized conser 88.5 8.4 0.00018 28.6 9.9 134 241-376 27-169 (173)
305 KOG1877 Putative transmembrane 88.4 20 0.00044 35.2 13.9 90 92-181 73-173 (819)
306 smart00802 UME Domain in UVSB 88.3 5.7 0.00012 28.2 8.0 72 76-149 12-89 (107)
307 cd03572 ENTH_epsin_related ENT 87.9 8.6 0.00019 28.0 10.7 67 195-263 4-70 (122)
308 PF14868 DUF4487: Domain of un 87.7 26 0.00056 33.3 24.1 87 292-379 463-554 (559)
309 cd00197 VHS_ENTH_ANTH VHS, ENT 87.6 8.6 0.00019 27.7 11.2 37 230-266 36-72 (115)
310 smart00567 EZ_HEAT E-Z type HE 87.6 0.76 1.6E-05 23.8 2.5 29 50-86 1-29 (30)
311 KOG2199 Signal transducing ada 87.6 4.8 0.0001 35.4 8.5 69 231-299 45-118 (462)
312 PF09324 DUF1981: Domain of un 87.5 4.4 9.4E-05 27.5 6.8 68 267-334 14-84 (86)
313 cd00197 VHS_ENTH_ANTH VHS, ENT 87.5 8.8 0.00019 27.6 10.7 38 191-228 36-73 (115)
314 PF12397 U3snoRNP10: U3 small 87.4 9.2 0.0002 27.8 11.1 34 191-224 5-39 (121)
315 PF11864 DUF3384: Domain of un 87.2 26 0.00055 32.7 31.3 284 49-342 3-335 (464)
316 KOG2229 Protein required for a 87.1 24 0.00053 32.5 23.1 101 75-179 20-126 (616)
317 COG5369 Uncharacterized conser 86.6 2.9 6.3E-05 38.4 7.0 109 230-338 430-545 (743)
318 PF12612 TFCD_C: Tubulin foldi 86.5 12 0.00026 30.0 10.0 29 231-259 7-35 (193)
319 COG5537 IRR1 Cohesin [Cell div 86.4 30 0.00065 32.7 16.9 104 235-338 279-386 (740)
320 PF06685 DUF1186: Protein of u 85.9 19 0.00042 30.1 14.0 116 75-203 73-196 (249)
321 KOG2199 Signal transducing ada 85.8 9.1 0.0002 33.7 9.3 99 44-149 20-124 (462)
322 KOG1932 TATA binding protein a 85.8 33 0.00072 34.9 14.0 58 40-105 647-706 (1180)
323 KOG1848 Uncharacterized conser 85.1 54 0.0012 34.5 20.6 33 306-338 1100-1132(1610)
324 PF09324 DUF1981: Domain of un 85.1 9.4 0.0002 25.9 7.5 69 306-374 14-85 (86)
325 COG5537 IRR1 Cohesin [Cell div 84.7 36 0.00079 32.2 19.4 142 77-221 277-422 (740)
326 KOG3036 Protein involved in ce 84.5 22 0.00047 29.5 10.4 108 231-338 124-247 (293)
327 smart00185 ARM Armadillo/beta- 84.2 1.4 3.1E-05 24.5 2.8 29 348-376 12-40 (41)
328 COG5110 RPN1 26S proteasome re 83.8 38 0.00083 31.7 21.6 77 260-340 631-707 (881)
329 KOG2153 Protein involved in th 83.3 43 0.00094 31.9 23.3 52 54-105 303-354 (704)
330 cd07064 AlkD_like_1 A new stru 82.6 24 0.00053 28.6 14.7 125 5-144 54-180 (208)
331 smart00802 UME Domain in UVSB 82.2 15 0.00033 26.1 10.1 58 207-266 30-89 (107)
332 KOG1087 Cytosolic sorting prot 82.2 13 0.00028 34.3 9.2 99 238-342 12-116 (470)
333 KOG2759 Vacuolar H+-ATPase V1 81.8 39 0.00085 30.4 22.2 69 270-338 366-438 (442)
334 cd06561 AlkD_like A new struct 81.6 25 0.00055 28.1 13.9 64 78-144 108-171 (197)
335 PF14668 RICTOR_V: Rapamycin-i 81.1 10 0.00022 24.7 6.1 54 287-340 4-60 (73)
336 KOG1087 Cytosolic sorting prot 80.4 24 0.00051 32.6 10.2 99 43-147 12-116 (470)
337 KOG3678 SARM protein (with ste 80.0 48 0.001 30.3 17.0 133 11-143 196-336 (832)
338 PF14222 MOR2-PAG1_N: Cell mor 79.8 58 0.0013 31.1 21.0 182 76-261 130-347 (552)
339 KOG1222 Kinesin associated pro 79.7 50 0.0011 30.4 28.3 353 15-378 281-664 (791)
340 KOG3678 SARM protein (with ste 79.3 51 0.0011 30.2 11.6 146 232-377 181-336 (832)
341 KOG3961 Uncharacterized conser 78.4 8.7 0.00019 30.8 6.0 88 230-317 113-207 (262)
342 PF14631 FancD2: Fanconi anaem 77.4 1.1E+02 0.0024 33.1 15.3 140 34-176 433-577 (1426)
343 PF03130 HEAT_PBS: PBS lyase H 77.2 3.3 7.1E-05 20.8 2.4 13 169-181 1-13 (27)
344 PF14668 RICTOR_V: Rapamycin-i 76.3 11 0.00023 24.7 5.1 55 248-302 4-61 (73)
345 KOG3036 Protein involved in ce 75.7 45 0.00098 27.7 9.6 68 271-338 125-197 (293)
346 PF07539 DRIM: Down-regulated 75.0 28 0.0006 26.3 7.8 81 230-318 16-97 (141)
347 KOG1848 Uncharacterized conser 74.7 1.2E+02 0.0026 32.1 23.5 214 162-376 851-1131(1610)
348 PF12231 Rif1_N: Rap1-interact 74.6 65 0.0014 29.0 30.1 261 88-376 59-351 (372)
349 PF07539 DRIM: Down-regulated 74.6 25 0.00054 26.5 7.4 55 75-136 17-71 (141)
350 KOG3961 Uncharacterized conser 74.4 4.7 0.0001 32.3 3.6 86 75-162 114-201 (262)
351 KOG1837 Uncharacterized conser 73.8 1.3E+02 0.0029 32.2 30.9 75 307-381 1539-1615(1621)
352 COG4912 Predicted DNA alkylati 71.1 55 0.0012 26.6 9.1 70 74-146 117-186 (222)
353 KOG2038 CAATT-binding transcri 69.7 1.2E+02 0.0026 29.9 22.7 69 151-221 302-370 (988)
354 PF14631 FancD2: Fanconi anaem 69.2 1.8E+02 0.0038 31.7 23.2 149 230-380 434-586 (1426)
355 PF12612 TFCD_C: Tubulin foldi 69.2 54 0.0012 26.2 8.9 104 153-260 7-116 (193)
356 PF12726 SEN1_N: SEN1 N termin 68.9 1.3E+02 0.0028 30.1 28.5 137 11-148 96-248 (727)
357 cd07920 Pumilio Pumilio-family 68.9 79 0.0017 27.6 23.7 19 42-60 26-44 (322)
358 KOG1566 Conserved protein Mo25 68.2 80 0.0017 27.4 14.4 187 74-264 78-290 (342)
359 PF06371 Drf_GBD: Diaphanous G 67.0 40 0.00086 26.6 7.7 56 282-337 128-186 (187)
360 KOG1837 Uncharacterized conser 65.1 2.1E+02 0.0045 31.0 19.4 65 240-304 1550-1616(1621)
361 PF06685 DUF1186: Protein of u 64.7 85 0.0018 26.4 14.7 80 77-164 113-196 (249)
362 PF11935 DUF3453: Domain of un 64.6 83 0.0018 26.2 18.7 49 152-202 113-163 (239)
363 cd07920 Pumilio Pumilio-family 62.3 1.1E+02 0.0023 26.8 22.6 15 113-127 114-128 (322)
364 PF12333 Ipi1_N: Rix1 complex 62.2 34 0.00074 24.0 5.7 54 268-321 9-65 (102)
365 PF06371 Drf_GBD: Diaphanous G 61.8 51 0.0011 26.0 7.5 52 207-258 131-185 (187)
366 PF11841 DUF3361: Domain of un 61.1 75 0.0016 24.5 9.7 97 246-342 32-135 (160)
367 PF09759 Atx10homo_assoc: Spin 60.6 44 0.00095 23.5 5.8 57 53-109 3-64 (102)
368 KOG2038 CAATT-binding transcri 59.8 1.9E+02 0.004 28.7 23.2 69 113-183 303-371 (988)
369 cd03562 CID CID (CTD-Interacti 58.4 65 0.0014 23.0 7.4 68 269-336 36-106 (114)
370 PF11935 DUF3453: Domain of un 58.1 1.1E+02 0.0024 25.5 17.8 85 193-279 44-162 (239)
371 KOG4646 Uncharacterized conser 56.7 82 0.0018 23.6 8.9 103 35-142 16-127 (173)
372 PF12333 Ipi1_N: Rix1 complex 54.7 42 0.0009 23.6 5.1 55 305-359 7-64 (102)
373 PF04078 Rcd1: Cell differenti 52.9 1.4E+02 0.0031 25.2 18.2 143 231-374 95-259 (262)
374 COG5330 Uncharacterized protei 52.7 72 0.0016 28.3 7.1 64 273-336 10-74 (364)
375 KOG1048 Neural adherens juncti 51.8 2.5E+02 0.0054 27.7 21.3 96 281-376 530-640 (717)
376 PF14663 RasGEF_N_2: Rapamycin 50.8 48 0.001 23.9 5.0 29 76-104 9-37 (115)
377 COG4912 Predicted DNA alkylati 49.6 86 0.0019 25.6 6.6 87 87-183 98-184 (222)
378 PF09759 Atx10homo_assoc: Spin 49.0 68 0.0015 22.6 5.3 54 13-66 2-60 (102)
379 KOG2374 Uncharacterized conser 46.2 2.5E+02 0.0054 26.1 10.2 109 153-265 7-130 (661)
380 COG5110 RPN1 26S proteasome re 46.0 2.7E+02 0.0059 26.5 19.5 72 184-259 633-704 (881)
381 PF14228 MOR2-PAG1_mid: Cell m 45.3 4E+02 0.0087 28.2 15.1 67 115-181 504-571 (1120)
382 KOG1823 DRIM (Down-regulated i 45.1 4.2E+02 0.0092 28.5 23.6 289 17-320 871-1180(1364)
383 PF13925 Katanin_con80: con80 44.9 1.4E+02 0.0029 23.2 7.0 36 191-226 68-103 (164)
384 PF14663 RasGEF_N_2: Rapamycin 44.8 57 0.0012 23.5 4.6 34 228-261 5-38 (115)
385 PF11919 DUF3437: Domain of un 43.3 1E+02 0.0022 21.1 5.4 55 285-340 4-60 (90)
386 PF08620 RPAP1_C: RPAP1-like, 43.2 39 0.00083 22.1 3.1 35 307-341 37-71 (73)
387 PF12783 Sec7_N: Guanine nucle 42.3 1.6E+02 0.0035 22.8 9.6 70 269-338 72-146 (168)
388 PF12783 Sec7_N: Guanine nucle 41.6 1.6E+02 0.0036 22.7 12.3 70 230-299 72-146 (168)
389 COG5330 Uncharacterized protei 41.2 2.1E+02 0.0045 25.6 8.1 28 191-218 46-73 (364)
390 PF05997 Nop52: Nucleolar prot 40.2 2.1E+02 0.0045 23.5 17.4 69 80-148 5-77 (217)
391 PF12726 SEN1_N: SEN1 N termin 39.8 4E+02 0.0088 26.7 24.7 105 5-109 128-248 (727)
392 KOG1932 TATA binding protein a 39.8 4.7E+02 0.01 27.4 14.5 70 85-162 653-724 (1180)
393 KOG0267 Microtubule severing p 39.5 1.3E+02 0.0028 29.3 7.0 58 206-264 690-747 (825)
394 KOG4199 Uncharacterized conser 38.7 2.8E+02 0.0061 24.6 26.2 145 233-377 285-444 (461)
395 KOG1926 Predicted regulator of 38.4 4.9E+02 0.011 27.2 20.9 78 2-82 79-156 (1129)
396 PF14222 MOR2-PAG1_N: Cell mor 37.1 3.9E+02 0.0084 25.7 26.0 242 91-339 59-347 (552)
397 KOG0929 Guanine nucleotide exc 37.1 6E+02 0.013 27.9 18.2 110 193-302 1172-1301(1514)
398 COG2733 Predicted membrane pro 36.7 3.2E+02 0.007 24.7 24.6 27 276-302 307-333 (415)
399 PF09450 DUF2019: Domain of un 36.5 34 0.00073 24.2 2.2 22 2-23 52-73 (106)
400 KOG1789 Endocytosis protein RM 35.7 5.5E+02 0.012 27.1 12.0 127 249-376 1743-1882(2235)
401 PF04078 Rcd1: Cell differenti 35.5 2.8E+02 0.006 23.5 15.4 68 74-141 94-166 (262)
402 PF11791 Aconitase_B_N: Aconit 35.5 2E+02 0.0044 22.0 7.3 30 312-341 97-126 (154)
403 PF11841 DUF3361: Domain of un 34.2 2.2E+02 0.0048 22.0 11.3 60 127-186 73-135 (160)
404 PHA02855 anti-apoptotic membra 33.0 61 0.0013 24.8 3.2 28 3-30 83-110 (180)
405 PHA02855 anti-apoptotic membra 32.8 1.8E+02 0.0039 22.4 5.6 26 239-264 85-110 (180)
406 PF08324 PUL: PUL domain; Int 32.0 2.6E+02 0.0056 23.6 7.5 96 8-103 121-230 (268)
407 KOG1988 Uncharacterized conser 31.5 5.7E+02 0.012 26.0 19.0 114 34-147 22-135 (970)
408 KOG0890 Protein kinase of the 31.3 8.8E+02 0.019 28.1 16.4 199 52-260 896-1113(2382)
409 PF05997 Nop52: Nucleolar prot 31.2 3E+02 0.0064 22.6 18.5 30 343-372 184-213 (217)
410 COG5231 VMA13 Vacuolar H+-ATPa 31.1 3.7E+02 0.008 23.7 17.2 255 115-377 150-428 (432)
411 KOG1926 Predicted regulator of 30.9 6.5E+02 0.014 26.4 22.5 66 37-103 75-140 (1129)
412 KOG1988 Uncharacterized conser 30.4 6E+02 0.013 25.9 19.4 112 76-187 25-136 (970)
413 KOG3687 Tuberin - Rap/ran-GTPa 30.3 2.2E+02 0.0047 29.3 7.1 77 188-265 425-507 (1697)
414 PF01465 GRIP: GRIP domain; I 30.1 1.2E+02 0.0026 17.6 3.9 32 152-183 6-37 (46)
415 KOG0267 Microtubule severing p 29.8 2.2E+02 0.0047 27.9 6.8 72 270-342 676-747 (825)
416 PF04869 Uso1_p115_head: Uso1 29.6 3.9E+02 0.0085 23.5 12.3 17 88-104 51-67 (312)
417 PF11919 DUF3437: Domain of un 29.5 1.4E+02 0.003 20.5 4.3 15 53-67 6-20 (90)
418 PF08158 NUC130_3NT: NUC130/3N 29.3 77 0.0017 19.1 2.7 15 322-336 32-46 (52)
419 KOG2753 Uncharacterized conser 28.3 4.2E+02 0.0091 23.4 15.0 14 286-299 122-135 (378)
420 PF09268 Clathrin-link: Clathr 27.8 70 0.0015 15.7 1.9 18 271-288 4-21 (24)
421 PF10304 DUF2411: Domain of un 27.1 1.2E+02 0.0025 16.6 3.3 19 357-375 15-33 (36)
422 KOG1566 Conserved protein Mo25 26.9 4.3E+02 0.0094 23.1 18.1 183 191-377 78-286 (342)
423 PF01417 ENTH: ENTH domain; I 26.9 2.5E+02 0.0055 20.4 8.6 67 40-109 7-76 (125)
424 KOG2753 Uncharacterized conser 26.8 4.5E+02 0.0097 23.3 15.1 91 208-298 122-215 (378)
425 PF14676 FANCI_S2: FANCI solen 26.8 3E+02 0.0065 21.3 9.1 81 290-372 75-156 (158)
426 KOG0905 Phosphoinositide 3-kin 25.4 8.6E+02 0.019 26.1 13.8 33 165-202 902-934 (1639)
427 PF13925 Katanin_con80: con80 25.1 3.3E+02 0.0071 21.1 9.0 35 75-109 69-103 (164)
428 COG1698 Uncharacterized protei 24.7 2.3E+02 0.0051 19.3 8.5 54 152-205 16-72 (93)
429 PF14961 BROMI: Broad-minded p 24.6 1.3E+02 0.0029 31.4 4.8 67 2-68 167-234 (1296)
430 PF01417 ENTH: ENTH domain; I 24.4 2.8E+02 0.0062 20.1 9.8 65 197-264 8-75 (125)
431 KOG3534 p53 inducible protein 23.9 3E+02 0.0064 27.0 6.6 73 110-182 923-997 (1253)
432 KOG2842 Interferon-related pro 23.7 5.5E+02 0.012 23.2 17.1 266 45-318 69-380 (427)
433 KOG3687 Tuberin - Rap/ran-GTPa 23.0 8.9E+02 0.019 25.3 19.2 59 320-378 441-503 (1697)
434 KOG0890 Protein kinase of the 22.8 1.3E+03 0.027 27.1 26.1 200 168-377 895-1113(2382)
435 KOG3723 PH domain protein Melt 22.4 7E+02 0.015 24.0 13.7 69 270-340 199-268 (851)
436 cd03562 CID CID (CTD-Interacti 22.4 2.9E+02 0.0063 19.6 8.9 71 306-376 34-107 (114)
437 KOG1104 Nuclear cap-binding co 22.1 8E+02 0.017 24.5 10.1 29 114-142 107-135 (759)
438 smart00582 RPR domain present 21.3 3.2E+02 0.0069 19.6 7.8 15 362-376 92-106 (121)
439 PF04286 DUF445: Protein of un 21.1 5.8E+02 0.013 22.6 24.5 16 50-65 36-51 (367)
440 KOG2374 Uncharacterized conser 20.8 7.1E+02 0.015 23.4 11.0 109 192-304 7-130 (661)
441 PF14726 RTTN_N: Rotatin, an a 20.7 3.1E+02 0.0067 19.2 8.2 55 246-300 2-60 (98)
442 PF04510 DUF577: Family of unk 20.1 4.4E+02 0.0096 20.7 11.8 35 288-322 60-97 (174)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-34 Score=264.78 Aligned_cols=378 Identities=51% Similarity=0.746 Sum_probs=327.9
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChh-hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 80 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l 80 (382)
+.+|..|+...||..|...+..+...+..+ .....+.+.+.+..+|++|++|....+....+...++++.......+.+
T Consensus 281 ~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 360 (759)
T KOG0211|consen 281 LIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPV 360 (759)
T ss_pred HhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhH
Confidence 456666777777777777777777766655 5566677777777777777777777777777777777766666667777
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhC----HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHH
Q 016814 81 VRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 156 (382)
Q Consensus 81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~----~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 156 (382)
...++|+.+++|.+...-...++.... .+...+.++|.+..++.|.+..||.+.+.....+...+|.+...+.+.|
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp 440 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLP 440 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccCh
Confidence 777777777777777777777766665 3345567889999999999999999999999999999998888899999
Q ss_pred HHHHhhcCCChHHHHHHHH---hhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814 157 IFLSLLKDEFPDVRLNIIS---KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 233 (382)
Q Consensus 157 ~l~~~l~d~~~~vr~~~~~---~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 233 (382)
.+...++|+++.||.+... .+..+....|.+...+..+|.+..+..|.+|++|.++.+.++.++...|.+++.+.+.
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~ 520 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLA 520 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Confidence 9999999999999999994 4445556677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHH
Q 016814 234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 313 (382)
Q Consensus 234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~ 313 (382)
+.+..++.|....+|++|+..+..++..+|.++....++|.++.+..+++|.+|.+.+.++..+++.+|.+.+.+.++|.
T Consensus 521 ~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~ 600 (759)
T KOG0211|consen 521 ELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPV 600 (759)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHh
Q 016814 314 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379 (382)
Q Consensus 314 l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 379 (382)
+..+.+|++++||..+++.|..+...+........+.|.+..+..|++.+||..|..|++.+....
T Consensus 601 ~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 601 FLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred HHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888999999999999999999999999999887543
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.97 E-value=4.4e-30 Score=236.48 Aligned_cols=379 Identities=19% Similarity=0.290 Sum_probs=345.9
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc-ccccchHHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAY 80 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l 80 (382)
.++|++|.+|.||..+++-++.+++.++.+...+.++|.+.++..|....||.++...+..+...+... ...+.+.+.+
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l 321 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESL 321 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHH
Confidence 468999999999999999999999999998889999999999999999999999999999999999887 6667899999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC----hHhHHHhhHH
Q 016814 81 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLP 156 (382)
Q Consensus 81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~ 156 (382)
++..+|.+|.+|....+....+.+.++++.......+.+..+++|..+.+|.+.+.-...++.... .....+.++|
T Consensus 322 ~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp 401 (759)
T KOG0211|consen 322 VQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP 401 (759)
T ss_pred HHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhH
Confidence 999999999999999999999999988865555678899999999999999999999999988777 3334577889
Q ss_pred HHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH---hhhchhhhHHHHH
Q 016814 157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA---SQLGVGFFDDKLG 233 (382)
Q Consensus 157 ~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~---~~~~~~~~~~~l~ 233 (382)
.+..++.|.+..||...+..+..+....|.+.....++|.+...++|..+.||..+...+..+- ...|.....+.++
T Consensus 402 ~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slL 481 (759)
T KOG0211|consen 402 EVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLL 481 (759)
T ss_pred HHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhh
Confidence 9999999999999999999998888888888777889999999999999999999996664443 3446777778999
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHH
Q 016814 234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 313 (382)
Q Consensus 234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~ 313 (382)
|.+..+-.|..|++|.+..+.+..++...|.+.+.+.+-+.+..++.|..+.+|.+++..+..++..+|.++....++|.
T Consensus 482 p~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k 561 (759)
T KOG0211|consen 482 PAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPK 561 (759)
T ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHH
Confidence 99999999999999999999999999999988888888999999999999999999999999999999988899999999
Q ss_pred HHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 314 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 314 l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
++....++++.+|.+.+.++..++..+|.+.+...++|.+..+..|++++||.++++.+..+.+.+.
T Consensus 562 ~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~ 628 (759)
T KOG0211|consen 562 LLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD 628 (759)
T ss_pred HHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999988765
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.5e-25 Score=203.29 Aligned_cols=379 Identities=21% Similarity=0.234 Sum_probs=297.9
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPA 79 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~ 79 (382)
|.....+..+.||+..++.+..+++...++ .|+++++++.+..+++++..|+.+...|..+...+|.... ...+.+.
T Consensus 85 L~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~l 163 (1075)
T KOG2171|consen 85 LEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRL 163 (1075)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHH
Confidence 455678889999999999999999998777 8999999999999999999999999999999999998543 3468999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhC--HH--HHHHhhhHhh----hhhcCCCchHHHHHHHHHHHhhccccChH--h
Q 016814 80 YVRLLRDNEAEVRIAAAGKVTKFCRILN--PE--LAIQHILPCV----KELSSDSSQHVRSALASVIMGMAPLLGKD--A 149 (382)
Q Consensus 80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~--~~--~~~~~il~~l----~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 149 (382)
|.+.+.|++..||.+++++++.++.... +. .....++|.+ .+.+++.+...-..+.+++..++...++- .
T Consensus 164 f~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~ 243 (1075)
T KOG2171|consen 164 FSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRP 243 (1075)
T ss_pred HHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999998899999999999999885 22 1223455544 44566667766777888888877655531 1
Q ss_pred HHHhhHHHHHHhhcCC--ChHHHHHHHHhhHHhhhhhch-----hhHhhhHHHHHHHHh----cCCCc------------
Q 016814 150 TIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGI-----DLLSQSLLPAIVELA----EDRHW------------ 206 (382)
Q Consensus 150 ~~~~l~~~l~~~l~d~--~~~vr~~~~~~l~~~~~~~~~-----~~~~~~llp~l~~~~----~d~~~------------ 206 (382)
....++.+..+..++. ++.+|..++..+..+.++.+. ..+.+.++|.+..+. .|+.|
T Consensus 244 ~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~ 323 (1075)
T KOG2171|consen 244 HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEE 323 (1075)
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccccc
Confidence 2356666666776664 589999999999888776221 113356666666654 22222
Q ss_pred hHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcch
Q 016814 207 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHY 284 (382)
Q Consensus 207 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~ 284 (382)
.-...+.+++..++.++|++...+.+++.+..++.+++|.-|.+++.+++.+++.++. ....+.++|.+++.++|+++
T Consensus 324 ~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphp 403 (1075)
T KOG2171|consen 324 TPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHP 403 (1075)
T ss_pred CcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 2456788899999999999999999999999999999999999999999999987654 22456788999999999999
Q ss_pred HHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCC-CccHHHHHHHHHHHHhhhhhHHHHHHhHHH----HHHHh
Q 016814 285 LYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQSMVEKTIRP----CLVEL 356 (382)
Q Consensus 285 ~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~----~l~~l 356 (382)
+||.+|+.+++++++.+.+. .+.+.+.|.++..+.|+ ++.|...|+.++-.+.+....+.+..++-+ .+..+
T Consensus 404 rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L 483 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLL 483 (1075)
T ss_pred HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 45567777888877766 457888889898888877766554443333 33345
Q ss_pred cCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 357 TEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 357 ~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
...+.+.||..+..|++.++...+.
T Consensus 484 ~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 484 LQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhh
Confidence 6778889999999999999988764
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-23 Score=196.18 Aligned_cols=371 Identities=16% Similarity=0.223 Sum_probs=290.0
Q ss_pred hccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 80 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l 80 (382)
+-+.++|++|..|+-.+.++....-+ .+..+.+...+... .++..+.||+..++.++.+++...++ .+.++++.+
T Consensus 45 ~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L 123 (1075)
T KOG2171|consen 45 LATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFL 123 (1075)
T ss_pred HhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence 45567899999999888877764211 33445555544444 46888999999999999999998888 789999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC--hHh------H
Q 016814 81 VRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDA------T 150 (382)
Q Consensus 81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~------~ 150 (382)
++..+++++..|+.|+..|.++...++.. .+...+.+.+.+.+.|++..||..++++++.++..++ +.. .
T Consensus 124 ~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~l 203 (1075)
T KOG2171|consen 124 FQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDL 203 (1075)
T ss_pred HHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999888765 4566889999999999998899999999999998885 221 1
Q ss_pred HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHHHHHhcCC--CchHHHHHHHHhHHHHhhhch-
Q 016814 151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGV- 225 (382)
Q Consensus 151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~- 225 (382)
.+.++..+.+.+.+.+...-..++.++..+....++ ......++....+..+++ +..+|..+++.+..+++....
T Consensus 204 lP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~ 283 (1075)
T KOG2171|consen 204 LPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAM 283 (1075)
T ss_pred hHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHH
Confidence 234444555566777777788888888888766543 111245555556666554 567999999999888775321
Q ss_pred ----hhhHHHHHHHHHHHhcc----chh------------HHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchH
Q 016814 226 ----GFFDDKLGALCMQWLQD----KVY------------SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 285 (382)
Q Consensus 226 ----~~~~~~l~~~l~~~l~d----~~~------------~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 285 (382)
..+.+.+++.+..++.| ++| .....|.+++..++..+|++.....+++.+..++.+++|.
T Consensus 284 ~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~ 363 (1075)
T KOG2171|consen 284 CKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWK 363 (1075)
T ss_pred hhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHH
Confidence 11445677777666532 111 2566789999999999999888888999999999999999
Q ss_pred HHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhcCCC
Q 016814 286 YRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDP 360 (382)
Q Consensus 286 ~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~ 360 (382)
.|.+++.+++.+++.++.. ...++++|.++++++|++|.||.+|+.++|++...+.+. .+.+.+.|.|.....|+
T Consensus 364 ~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~ 443 (1075)
T KOG2171|consen 364 ERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST 443 (1075)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc
Confidence 9999999999999998854 467899999999999999999999999999999999875 45678888888887775
Q ss_pred -CccHHhHHHHHHHHHH
Q 016814 361 -DVDVRFFATQAIQSID 376 (382)
Q Consensus 361 -~~~vr~~a~~al~~~~ 376 (382)
+++|..+|+.|+-.+.
T Consensus 444 ~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 444 QNVRVQAHAAAALVNFS 460 (1075)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 4588888888887654
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.8e-23 Score=182.36 Aligned_cols=374 Identities=14% Similarity=0.171 Sum_probs=282.4
Q ss_pred hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc-------cccchH
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------TRMDLV 77 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~ll 77 (382)
-+.|.++.+|....-.+..++..-+ -..|++++|.+.+++..++....+.+..+|.++++...... -..-++
T Consensus 98 ~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mi 176 (885)
T KOG2023|consen 98 GLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMI 176 (885)
T ss_pred hccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhH
Confidence 4678889999887777777766443 35589999999999999999999999999999998654311 123489
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHh
Q 016814 78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQ 153 (382)
Q Consensus 78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ 153 (382)
|.++++.+++++.+|..|+.++..++...+.. ...+.++..+..+.+|.++.||...|.++..+.+.-.+.. ....
T Consensus 177 pkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~ 256 (885)
T KOG2023|consen 177 PKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDN 256 (885)
T ss_pred HHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHH
Confidence 99999999999999999999999987655544 4456788999999999999999999999999886655432 2356
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-h---hHhhhHHHHHHHH----------hc-----------------
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-D---LLSQSLLPAIVEL----------AE----------------- 202 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-~---~~~~~llp~l~~~----------~~----------------- 202 (382)
++.++.....|.+++|...+++....+++.--. + .+...++|.+.+- ++
T Consensus 257 IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP 336 (885)
T KOG2023|consen 257 IVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP 336 (885)
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccc
Confidence 777788888999999999999988887654211 1 1224555655432 11
Q ss_pred -------------------C----------CCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHH
Q 016814 203 -------------------D----------RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN 253 (382)
Q Consensus 203 -------------------d----------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 253 (382)
+ .+|..|+..+..+..++..+|.+.. +.++|.+...|..++|.||++++-
T Consensus 337 Rfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~L~~~~W~vrEagvL 415 (885)
T KOG2023|consen 337 RFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEHLSSEEWKVREAGVL 415 (885)
T ss_pred hhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHHcCcchhhhhhhhHH
Confidence 0 1389999999999999887777654 578888888888899999999999
Q ss_pred HHHHHHHHhCh--HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh---hhhhhhhHHHHHhhccCCCccHHHH
Q 016814 254 NLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFN 328 (382)
Q Consensus 254 ~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~ 328 (382)
++|.+++.+-. -.....++|.+++.+.|+.+-||...++.+++.++..-. +.+...++..+++.+-|.+..|+.+
T Consensus 416 AlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEA 495 (885)
T KOG2023|consen 416 ALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEA 495 (885)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHH
Confidence 99999986532 224456899999999999999999999999998876543 2466677777888888999999999
Q ss_pred HHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCC-CCccHHhHHHHHHHHHHHHhcc
Q 016814 329 VAKVLQSLIPIVDQS--MVEKTIRPCLVELTED-PDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 329 a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~~~~~~~~~ 381 (382)
|+.+++.+-+.-+.+ .+...++..+.....- +..++ .-...|++.+++..|+
T Consensus 496 AcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL-lILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 496 ACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL-LILYDAIGTLADSVGH 550 (885)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce-ehHHHHHHHHHHHHHH
Confidence 999999888777654 2334455544443322 22232 2456777888777764
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.1e-23 Score=179.15 Aligned_cols=347 Identities=20% Similarity=0.217 Sum_probs=267.1
Q ss_pred hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---
Q 016814 33 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--- 109 (382)
Q Consensus 33 ~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--- 109 (382)
..+++-.-+...+.|.++.+|...--.+..++..-+-. .+.+++|.+.+++.+++....+.|+.+|.++++.....
T Consensus 87 ~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~-~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds 165 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQ-HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS 165 (885)
T ss_pred HHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccc-cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh
Confidence 34445555556677888888877666666655433333 35789999999999999999999999999998754322
Q ss_pred ----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 110 ----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 110 ----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
...+.++|.+.++.+++++.+|..++.++..+.-.-.... ..+.++..+..+.+|++++||+.++.++.-+.+.
T Consensus 166 ~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 166 DVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred hcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 2346789999999999999999999999998875443222 3478888888999999999999999999888766
Q ss_pred hchhhH--hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-chhh---hHHHHHHHHHHH----------hc------
Q 016814 184 IGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGF---FDDKLGALCMQW----------LQ------ 241 (382)
Q Consensus 184 ~~~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~---~~~~l~~~l~~~----------l~------ 241 (382)
....-. ...++..+.+..+|.+..|-..+++....+++.- .++. +.++++|++... ++
T Consensus 246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~ 325 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE 325 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence 432111 1345566666678999999999999888887643 2222 235677776532 22
Q ss_pred ------------------------------c----------chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC
Q 016814 242 ------------------------------D----------KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 281 (382)
Q Consensus 242 ------------------------------d----------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~ 281 (382)
| .+|..|++++.++.-++..+|.+ ....++|.+.+.+.+
T Consensus 326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~L~~ 404 (885)
T KOG2023|consen 326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEHLSS 404 (885)
T ss_pred cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHHcCc
Confidence 1 13899999999999999988766 456799999999999
Q ss_pred cchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHh
Q 016814 282 PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVEL 356 (382)
Q Consensus 282 ~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l 356 (382)
..|.+|++++.+++.+++.+-.- ++...++|+++.++.|+.+-||..++.+|+..+..+-.+ .+...++..+.+.
T Consensus 405 ~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ 484 (885)
T KOG2023|consen 405 EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRR 484 (885)
T ss_pred chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHH
Confidence 99999999999999999987643 567889999999999999999999999999998876543 3444455555556
Q ss_pred cCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 357 TEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 357 ~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
+-|.+.+|+.+|+.|++.+-+-.|+
T Consensus 485 llD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 485 LLDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred HhcccHHHHHHHHHHHHHHHHhccc
Confidence 7799999999999999988766554
No 7
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.90 E-value=1.4e-21 Score=190.90 Aligned_cols=275 Identities=22% Similarity=0.272 Sum_probs=219.7
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 016814 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 116 (382)
Q Consensus 37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il 116 (382)
-++.+.+.++|+++.||..+++.|+.+.. ...+|.+.+.++|+++.||.+|+.+|..+.+.....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~------- 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA------- 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-------
Confidence 34566778899999999999999998652 446889999999999999999999999886544332
Q ss_pred HhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHH
Q 016814 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 196 (382)
Q Consensus 117 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~ 196 (382)
+.+...++|+++.||..++.+|+.+.. +. .+.+...+.|+++.||..++.+|+.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 456677888999999999999998752 11 1345678899999999999999988632 123
Q ss_pred HHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHH
Q 016814 197 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 276 (382)
Q Consensus 197 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 276 (382)
+..++.|+++.||..++..|+.+...- ..-.+.+..+++|+++.||..|+.+|+.+.. + ..+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~---~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC----P---PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c---chhHHHHH
Confidence 566789999999999999998875421 1235677888999999999999999988742 1 22445678
Q ss_pred hhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHh
Q 016814 277 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356 (382)
Q Consensus 277 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l 356 (382)
..+.|++|.+|..|+.+++.+.. +..++.|...++|+++.||..++.+|+.+. + .....+.|...
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence 88999999999999999987652 345588899999999999999999999961 1 23567788889
Q ss_pred cCCCCccHHhHHHHHHHH
Q 016814 357 TEDPDVDVRFFATQAIQS 374 (382)
Q Consensus 357 ~~d~~~~vr~~a~~al~~ 374 (382)
++|.+.+||..|.+||..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 999999999999999864
No 8
>PRK09687 putative lyase; Provisional
Probab=99.90 E-value=1.2e-21 Score=164.58 Aligned_cols=254 Identities=20% Similarity=0.191 Sum_probs=198.8
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhH
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 155 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 155 (382)
-.+.+.+.+.|++..||..++.+|+.+.. ..+++.+..+++|+++.+|..++.+|+.+...-. .....+
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~ 92 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVF 92 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHH
Confidence 36677777889999999999999887643 3456778888889999999999999998863111 123566
Q ss_pred HHHHHh-hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHH
Q 016814 156 PIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 234 (382)
Q Consensus 156 ~~l~~~-l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 234 (382)
|.+..+ .+|+++.||..++.+++.+..... ......++.+...+.|++|+||..++..|+.+. .+..++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHH
Confidence 777766 788899999999999988753211 112456666777788999999999999997653 245778
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHH
Q 016814 235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 314 (382)
Q Consensus 235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l 314 (382)
.+..+++|+++.||..|+.+||.+. .+. ....+.+...+.|+++.+|..|+.+++.+.. ...+|.+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~~----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L 228 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNK--YDN----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL 228 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCC--CCC----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence 8889999999999999999999882 222 3477888888999999999999999988542 3688899
Q ss_pred HhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcC-CCCccHHhHHHHHHHH
Q 016814 315 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQS 374 (382)
Q Consensus 315 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~ 374 (382)
++.+.++. +|..++.+|+.+.. ...+|.|..+++ ++|..|+..|.+++..
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 99998855 78899999998864 468899999886 8899999999988864
No 9
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.89 E-value=3e-21 Score=188.52 Aligned_cols=270 Identities=20% Similarity=0.191 Sum_probs=215.3
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 82 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 82 (382)
...++|+++.||+.|++.|+.+.. +..++.+.+.+.|+++.||..++..|+.+.+..+. .+.+..
T Consensus 627 ~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~ 691 (897)
T PRK13800 627 APYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRD 691 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHH
Confidence 456789999999999999988642 44677788889999999999999999988653322 345667
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 162 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 162 (382)
.+.|+++.||.++++.|+.+.. +. .+.+...++|+++.||..++.+|+.+.. .+.+..++
T Consensus 692 ~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l~~~l 751 (897)
T PRK13800 692 HLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VESVAGAA 751 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHHHHHh
Confidence 7888999999999999988642 11 1345678899999999999999998632 13456789
Q ss_pred cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhcc
Q 016814 163 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242 (382)
Q Consensus 163 ~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 242 (382)
+|+++.||..++.+|+.+...- ...+|.+..+++|+++.||..++..|+.+.. + +.+.+.+...+.|
T Consensus 752 ~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~---~----~~~~~~l~~aL~d 818 (897)
T PRK13800 752 TDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC---P----PDDVAAATAALRA 818 (897)
T ss_pred cCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC---c----chhHHHHHHHhcC
Confidence 9999999999999999885421 1236778889999999999999999988743 1 2234557788999
Q ss_pred chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCC
Q 016814 243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRV 322 (382)
Q Consensus 243 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~ 322 (382)
++|.||..|+.+|+.+. . ...++.+...++|+++.||..|+.+|+.+. + .....+.+...++|++
T Consensus 819 ~d~~VR~~Aa~aL~~l~----~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~al~D~d 883 (897)
T PRK13800 819 SAWQVRQGAARALAGAA----A----DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTALTDSD 883 (897)
T ss_pred CChHHHHHHHHHHHhcc----c----cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHHHhCCC
Confidence 99999999999998754 2 336688889999999999999999998861 1 2345677788999999
Q ss_pred ccHHHHHHHHHHH
Q 016814 323 PNIKFNVAKVLQS 335 (382)
Q Consensus 323 ~~vR~~a~~~l~~ 335 (382)
+.||..|.++|..
T Consensus 884 ~~Vr~~A~~aL~~ 896 (897)
T PRK13800 884 ADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999863
No 10
>PRK09687 putative lyase; Provisional
Probab=99.89 E-value=5.1e-21 Score=160.83 Aligned_cols=255 Identities=15% Similarity=0.078 Sum_probs=204.1
Q ss_pred hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 016814 36 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 115 (382)
Q Consensus 36 ~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i 115 (382)
.-.+.+.+.+.|++..||..++..|+.+.. ..+++.+.++++|+++.+|..++.+|+.+...-.. ....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a 91 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNV 91 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHH
Confidence 344556677799999999999999987652 45788889999999999999999999998542111 1246
Q ss_pred hHhhhhh-cCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHH
Q 016814 116 LPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 194 (382)
Q Consensus 116 l~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ll 194 (382)
+|.+..+ .+|+++.||..++.+|+.++..-. .....+++.+...+.|+++.||..++.+|+.+.. +..+
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai 161 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAI 161 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHH
Confidence 6888776 799999999999999999864221 1124566777788899999999999999987642 5677
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHH
Q 016814 195 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274 (382)
Q Consensus 195 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 274 (382)
+.|..+++|++|.||..++..|+.+. .+ .+...+.+...+.|+++.||..|+..|+.+. . ...+|.
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~----~~av~~ 227 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK----D----KRVLSV 227 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC----C----hhHHHH
Confidence 88999999999999999999999882 11 2357788889999999999999999998853 2 358899
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhcc-CCCccHHHHHHHHHHH
Q 016814 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQS 335 (382)
Q Consensus 275 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~ 335 (382)
+++.+.+++ +|..++.+++.++. +..+|.+.++++ +++..|+..+.+++.+
T Consensus 228 Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 228 LIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 999999877 56678888888764 368889999886 7788899999998864
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.5e-19 Score=159.20 Aligned_cols=373 Identities=19% Similarity=0.239 Sum_probs=290.4
Q ss_pred hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHH-HHHHHHHHHHHHHHHhCCcccc---cchHHHH
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWR-VRYMVANQLYELCEAVGPEPTR---MDLVPAY 80 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~-vR~~a~~~l~~l~~~~~~~~~~---~~ll~~l 80 (382)
-++...|..+..|+++++.+|..--|...|+.+++.+..-..+..+. +|+..++.+|.+|+.+.++... +.++..+
T Consensus 98 tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaI 177 (859)
T KOG1241|consen 98 TLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAI 177 (859)
T ss_pred HcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHH
Confidence 35567788899999999999998777788999999888887766554 9999999999999999886432 3577777
Q ss_pred HHhcCC--CcHHHHHHHHHHHHHHHHh----hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---HhHH
Q 016814 81 VRLLRD--NEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATI 151 (382)
Q Consensus 81 ~~~l~d--~~~~VR~~a~~~l~~l~~~----~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~ 151 (382)
+..... ++..||-+|..+|..-.+. +..+.-.+.++..+.+.-+.++..+|.++..++..+....-. ....
T Consensus 178 v~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~ 257 (859)
T KOG1241|consen 178 VQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYME 257 (859)
T ss_pred HhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776543 5688999999999775543 445555678899999999999999999999999998854321 1122
Q ss_pred HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh-------hch------h--------hHhhhHHHHHHHHhc-------C
Q 016814 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-------IGI------D--------LLSQSLLPAIVELAE-------D 203 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~-------~~~------~--------~~~~~llp~l~~~~~-------d 203 (382)
+.++++....+++.+++|...+++....+++. ++. . .-.+.++|.+.+++. +
T Consensus 258 ~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~ 337 (859)
T KOG1241|consen 258 QALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDD 337 (859)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccc
Confidence 45777777778888999999999888866542 110 0 112478899888873 4
Q ss_pred CCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhc
Q 016814 204 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN 280 (382)
Q Consensus 204 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~ 280 (382)
++|..-.++-.+|..+++..|.+... .++|.+.+-++.++|+-|++|+.++|.+...-.+. .+..+.+|.+.....
T Consensus 338 DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~ 416 (859)
T KOG1241|consen 338 DDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS 416 (859)
T ss_pred ccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc
Confidence 57999999999999999988877654 89999999999999999999999999998744332 245678899999999
Q ss_pred CcchHHHHHHHHHHHHhccccC----hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH-----------HHH
Q 016814 281 NPHYLYRMTILRAISLLAPVMG----SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-----------SMV 345 (382)
Q Consensus 281 ~~~~~~r~~a~~~l~~l~~~~~----~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~-----------~~~ 345 (382)
|+.-.+|.++.++++++++.+. .......+++.++..++| .|.+-.++++++..++++... ..+
T Consensus 417 D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~ 495 (859)
T KOG1241|consen 417 DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPF 495 (859)
T ss_pred CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchh
Confidence 9999999999999999987765 335667788888999998 588999999999999865421 123
Q ss_pred HHhHHHHHHHhcC--C-CCccHHhHHHHHHHHHHHHh
Q 016814 346 EKTIRPCLVELTE--D-PDVDVRFFATQAIQSIDHVM 379 (382)
Q Consensus 346 ~~~i~~~l~~l~~--d-~~~~vr~~a~~al~~~~~~~ 379 (382)
...++..|.+..+ | .+.+.|..|.+||..+....
T Consensus 496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNS 532 (859)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcC
Confidence 3455555555443 3 56789999999999887653
No 12
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.7e-18 Score=152.62 Aligned_cols=371 Identities=18% Similarity=0.193 Sum_probs=279.3
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChhh-hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL 84 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l 84 (382)
-++.+..+|....-.-+.++.++...+ ....++..+.+-+.-++..+|.+...++..+........ ..++++.+.+++
T Consensus 65 ~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll 143 (569)
T KOG1242|consen 65 NSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELL 143 (569)
T ss_pred ccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHh
Confidence 334466777777777777777765432 223355556666677888999999999888776554433 245788888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHH-HHHhhhHhhhhhcCCCchHHHH-HHHHHHHhhccccChH--hHHHhhHHHHHH
Q 016814 85 RDNEAEVRIAAAGKVTKFCRILNPEL-AIQHILPCVKELSSDSSQHVRS-ALASVIMGMAPLLGKD--ATIEQLLPIFLS 160 (382)
Q Consensus 85 ~d~~~~VR~~a~~~l~~l~~~~~~~~-~~~~il~~l~~~~~d~~~~vr~-~a~~~l~~l~~~~~~~--~~~~~l~~~l~~ 160 (382)
+.....-|..+...+..+....+.+. ....++..+.+..+|.+...+. .+.-+.......+|+. ...-.++|.+..
T Consensus 144 ~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~ 223 (569)
T KOG1242|consen 144 TSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILT 223 (569)
T ss_pred ccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHH
Confidence 87777778888888888777655442 2346778888888998876554 4555555555666632 223455666666
Q ss_pred hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch--hhhHHHHHHHHHH
Q 016814 161 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ 238 (382)
Q Consensus 161 ~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ 238 (382)
-+.|..+.||.++..+...+...++...+ +.++|.+..-+.+..|+.+..+++.++.++...+. +...+.++|.+..
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred HhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHH
Confidence 77889999999999999999888877666 66777666666666999999999999988876654 3456889999999
Q ss_pred HhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHh--ccccChhhhhhhhHHHHHh
Q 016814 239 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL--APVMGSEITCSRLLPVVIN 316 (382)
Q Consensus 239 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l--~~~~~~~~~~~~~l~~l~~ 316 (382)
.+.|..++||+++..++..+........ ...++|.+.+.+.|++..+.++ +..++.- +....+ +....++|.+.+
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~~-psLalmvpiL~R 379 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPEC-LDSLGATTFVAEVDA-PSLALMVPILKR 379 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHHH-HHhhcceeeeeeecc-hhHHHHHHHHHH
Confidence 9999999999999999999999887655 3558999999999998544333 3333321 222222 467789999999
Q ss_pred hccCCCccHHHHHHHHHHHHhhhh-hHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 317 ASKDRVPNIKFNVAKVLQSLIPIV-DQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 317 ~l~d~~~~vR~~a~~~l~~i~~~~-~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
.+.+++...+..++..++.++.-. ++. .+...++|.+.+...|+.++||..+++|++.+.+-+|.
T Consensus 380 ~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 380 GLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred HHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999877 332 46789999999999999999999999999988887764
No 13
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.86 E-value=5.4e-18 Score=151.21 Aligned_cols=364 Identities=16% Similarity=0.177 Sum_probs=287.1
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChhh----hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHH
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPA 79 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~ 79 (382)
+.|+.++.|+..++.+..+...++..+ .+..++.-+.-.+++++...- -+..+++.++..++. ..+...+...
T Consensus 725 lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~st 803 (1172)
T KOG0213|consen 725 LKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICST 803 (1172)
T ss_pred hccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHH
Confidence 468889999999999999998887633 233344444444443333332 567889999999987 5666788999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHh---hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---HHHh
Q 016814 80 YVRLLRDNEAEVRIAAAGKVTKFCRI---LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQ 153 (382)
Q Consensus 80 l~~~l~d~~~~VR~~a~~~l~~l~~~---~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~ 153 (382)
++..++++++.||+.|++.++.++.. ++.+....++=-.+.+.+....++|--+.+.++..+.+..|-.. -...
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence 99999999999999999999988764 45555555666677888999999999999999999988876322 2478
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhh----chhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 229 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~----~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 229 (382)
++|.+...+++....|..+++..++.++..- +...| -.+--.+.++++..+..+|+++...++.+++.+|+....
T Consensus 884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW-MRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVL 962 (1172)
T KOG0213|consen 884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW-MRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVL 962 (1172)
T ss_pred hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHH
Confidence 9999999999999999999999999998653 33333 345556777788888999999999999999999985432
Q ss_pred -------------------------------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHH
Q 016814 230 -------------------------------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVL 276 (382)
Q Consensus 230 -------------------------------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~ 276 (382)
-.++|.+++--.-++..|+...++++..+.+..|. ..+.-.+.|.+.
T Consensus 963 atLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~Plle 1042 (1172)
T KOG0213|consen 963 ATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLE 1042 (1172)
T ss_pred HHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHH
Confidence 13567777666778889999999999999988876 345667899999
Q ss_pred hhhcCcchHHHHHHHHHHHHhccc---cChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHH
Q 016814 277 EMINNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL 353 (382)
Q Consensus 277 ~~l~~~~~~~r~~a~~~l~~l~~~---~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l 353 (382)
..+.|.+...|+.|..++..++-+ +|.+....+++..++...-+++|.+-.+..+++..+...+|+..+.++++..|
T Consensus 1043 DAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGL 1122 (1172)
T KOG0213|consen 1043 DALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGL 1122 (1172)
T ss_pred HhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhc
Confidence 999999999999999999998644 45566778899999998899999999999999999999999877666665544
Q ss_pred HHhcCCCCccHHhHHHHHHHHH
Q 016814 354 VELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 354 ~~l~~d~~~~vr~~a~~al~~~ 375 (382)
-.|...||..-.+.+..+
T Consensus 1123 ----FHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1123 ----FHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred ----cCcHHHHHHHHHHHHHhH
Confidence 357788888777666554
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.85 E-value=4.4e-18 Score=151.77 Aligned_cols=358 Identities=20% Similarity=0.270 Sum_probs=262.1
Q ss_pred cCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHh
Q 016814 7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRL 83 (382)
Q Consensus 7 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~ 83 (382)
.+.++.||...+++++.+++.++- +.++|++...+.+. +|+-|...+++..+++..+|.... ...++..+...
T Consensus 486 dn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 486 DNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG 561 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 456788898888888888888764 67999999999876 999999999999999999987653 23478888889
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCHH---HH-------------------------------------------------
Q 016814 84 LRDNEAEVRIAAAGKVTKFCRILNPE---LA------------------------------------------------- 111 (382)
Q Consensus 84 l~d~~~~VR~~a~~~l~~l~~~~~~~---~~------------------------------------------------- 111 (382)
+.|.+..||..++.++..+++..++- .+
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil 641 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLIL 641 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHH
Confidence 99999999999999999988865431 00
Q ss_pred -----------HHhhhHhhhhhc---------------------------------------------------------
Q 016814 112 -----------IQHILPCVKELS--------------------------------------------------------- 123 (382)
Q Consensus 112 -----------~~~il~~l~~~~--------------------------------------------------------- 123 (382)
+..++..+.+++
T Consensus 642 ~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~ 721 (1172)
T KOG0213|consen 642 IREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRV 721 (1172)
T ss_pred HHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHH
Confidence 000111111111
Q ss_pred ----CCCchHHHHHHHHHHHhhccccChH--------------------------------------------hHHHhhH
Q 016814 124 ----SDSSQHVRSALASVIMGMAPLLGKD--------------------------------------------ATIEQLL 155 (382)
Q Consensus 124 ----~d~~~~vr~~a~~~l~~l~~~~~~~--------------------------------------------~~~~~l~ 155 (382)
+|+++.-|...+.++..+...+|.. ...+.+.
T Consensus 722 v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~ 801 (1172)
T KOG0213|consen 722 VLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQIC 801 (1172)
T ss_pred hhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHH
Confidence 4455555555555544443333210 0112333
Q ss_pred HHHHHhhcCCChHHHHHHHHhhHHhhhh---hchhhH------------------------------------------h
Q 016814 156 PIFLSLLKDEFPDVRLNIISKLDQVNQV---IGIDLL------------------------------------------S 190 (382)
Q Consensus 156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~---~~~~~~------------------------------------------~ 190 (382)
.-+...++++++.||..++..++.++.. .+.+.. .
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 3333456899999999988877665432 111100 1
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHH---HHHHhccchhHHHHHHHHHHHHHHHHhChHHH
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 267 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 267 (382)
..++|.+...+++.+.+|..+++..++.++..-+...-....+.+ +..+|+..+.++|.+|...+|.+++..|+.
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq-- 959 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ-- 959 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH--
Confidence 356777777788888899999999999988643221112233333 455677888999999999999999999985
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HH
Q 016814 268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MV 345 (382)
Q Consensus 268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~ 345 (382)
+++..+++.|+....+.|....-+++..++.||+- .++|.+..--.-++.+|+...++++..+.+.+|.. ++
T Consensus 960 --dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY 1033 (1172)
T KOG0213|consen 960 --DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY 1033 (1172)
T ss_pred --HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH
Confidence 47778888888888888888888888889999874 57888888888889999999999999999998864 46
Q ss_pred HHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 346 EKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 346 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
.-.+.|.|.-.+.|.|...|..|..++..++
T Consensus 1034 iyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1034 IYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999888764
No 15
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.84 E-value=6.9e-18 Score=147.73 Aligned_cols=357 Identities=20% Similarity=0.297 Sum_probs=261.5
Q ss_pred cCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhCCcccc--cchHHHHHHh
Q 016814 7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRL 83 (382)
Q Consensus 7 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~~~--~~ll~~l~~~ 83 (382)
.++++.||....++.+.+++.++- +.++|++..++.+. +|+-|...+++..+++..+|..... ..++..+..+
T Consensus 291 ~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~ 366 (975)
T COG5181 291 TSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKL 366 (975)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHH
Confidence 467889999999999999998874 67899999998755 9999999999999999999986542 3578888899
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCHH---HHHH-------------------------hhhHhh----------------
Q 016814 84 LRDNEAEVRIAAAGKVTKFCRILNPE---LAIQ-------------------------HILPCV---------------- 119 (382)
Q Consensus 84 l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~-------------------------~il~~l---------------- 119 (382)
+.|.+..||..++.++..+++..++- .+.. .++|.+
T Consensus 367 l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv 446 (975)
T COG5181 367 LKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIV 446 (975)
T ss_pred hhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHH
Confidence 99999999999999999988876532 1000 000100
Q ss_pred --------------------------------------------------------------------------------
Q 016814 120 -------------------------------------------------------------------------------- 119 (382)
Q Consensus 120 -------------------------------------------------------------------------------- 119 (382)
T Consensus 447 ~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~ki 526 (975)
T COG5181 447 FREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKI 526 (975)
T ss_pred HHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHH
Confidence
Q ss_pred hhhcCCCchHHHHHHHHHHHhhccccCh--------------------------------------------HhHHHhhH
Q 016814 120 KELSSDSSQHVRSALASVIMGMAPLLGK--------------------------------------------DATIEQLL 155 (382)
Q Consensus 120 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~--------------------------------------------~~~~~~l~ 155 (382)
.+..+|+...-|...+.+...+...+|. +.....++
T Consensus 527 l~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~iv 606 (975)
T COG5181 527 LEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIV 606 (975)
T ss_pred HhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHH
Confidence 0111333333343333333332222210 00123444
Q ss_pred HHHHHhhcCCChHHHHHHHHhhHHhhhhh---chhh------------------------------------------Hh
Q 016814 156 PIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDL------------------------------------------LS 190 (382)
Q Consensus 156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~---~~~~------------------------------------------~~ 190 (382)
.-+.++++++.+.||..++...+.+...+ |... -.
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi 686 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPI 686 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCch
Confidence 44556678889999998887666554332 1110 01
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc----hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 266 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 266 (382)
..++|.+...+.+++.+|....+..++.++..-+ ...+.. +.--+...|+..+.++|.+|...+|.+.+..|++
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR-IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq- 764 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR-ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ- 764 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH-HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH-
Confidence 3567777777788888898999999988876433 232322 2223456678889999999999999999999995
Q ss_pred HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--H
Q 016814 267 AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--M 344 (382)
Q Consensus 267 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~ 344 (382)
+++..+++.++....+.|....-+++..++.+|+- .++|.+..--..++.+|+...++++..+.+..|+. +
T Consensus 765 ---dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~d 837 (975)
T COG5181 765 ---DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLD 837 (975)
T ss_pred ---HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 37778888888888889999999999999999974 57888888888899999999999999999999875 4
Q ss_pred HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 345 VEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 345 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
+.-.+.|.|.-.+.|.|+..|..|...+..++
T Consensus 838 Yvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 838 YVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 56789999999999999999999988887654
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.83 E-value=9.3e-18 Score=157.33 Aligned_cols=362 Identities=18% Similarity=0.250 Sum_probs=255.3
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 83 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~ 83 (382)
+=++++++.+|..|+++++.+.. .+..+.+.|.+.+++.|+++.||+.|+.++..+....++..... +++.+.++
T Consensus 86 kdl~~~n~~~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~l 160 (526)
T PF01602_consen 86 KDLNSPNPYIRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQL 160 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHH
T ss_pred HhhcCCCHHHHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhh
Confidence 34678999999999999999873 45567789999999999999999999999999998755543223 79999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHH
Q 016814 84 LRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS 160 (382)
Q Consensus 84 l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 160 (382)
+.|+++.|+.+|+.++..+ ...++ ...+.+.+.+...+.+.+++.+..+++.+..++..-........+++.+..
T Consensus 161 L~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~ 238 (526)
T PF01602_consen 161 LSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLN 238 (526)
T ss_dssp TTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHH
T ss_pred ccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHH
Confidence 9999999999999999988 23333 234556666666678899999999999888887543322111456666666
Q ss_pred hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh--------------
Q 016814 161 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-------------- 226 (382)
Q Consensus 161 ~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-------------- 226 (382)
++.+.++.|.-.++..+..+... ......+++.+..++.++++.+|..+++.+..++....+.
T Consensus 239 ~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~ 315 (526)
T PF01602_consen 239 LLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYD 315 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCS
T ss_pred HhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCC
Confidence 66666677777666666654332 1233566666777777777777777777666664332110
Q ss_pred -------------------hhHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHhCh--HHHH----------------
Q 016814 227 -------------------FFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGP--EWAM---------------- 268 (382)
Q Consensus 227 -------------------~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~--~~~~---------------- 268 (382)
.-...+++.+.+.+.+. +..+|..++..++.++..+.+ +++.
T Consensus 316 ~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~ 395 (526)
T PF01602_consen 316 DDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSN 395 (526)
T ss_dssp SSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHC
T ss_pred CChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccc
Confidence 00134566666666444 667888888888888876543 1111
Q ss_pred -----------------hhhHHHHHhhhcC-cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHH
Q 016814 269 -----------------QHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVA 330 (382)
Q Consensus 269 -----------------~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~ 330 (382)
...+..+.+.+.+ ++...+..+++.+|..++..........++..+...+.+.++.+|...+
T Consensus 396 ~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~il 475 (526)
T PF01602_consen 396 EIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQIL 475 (526)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred hHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHH
Confidence 2234445555554 3467889999999998887765114567777778888888888999999
Q ss_pred HHHHHHhhhhhHHHHHHhHHHHHHHhcC--CCCccHHhHHHHHHHHH
Q 016814 331 KVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSI 375 (382)
Q Consensus 331 ~~l~~i~~~~~~~~~~~~i~~~l~~l~~--d~~~~vr~~a~~al~~~ 375 (382)
.++.++....+.....+.+.+.+.++.. +.+.+||..|..-+.-+
T Consensus 476 t~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 476 TALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 9999999877654445688888888887 88999999998877654
No 17
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=4.7e-18 Score=147.25 Aligned_cols=374 Identities=17% Similarity=0.161 Sum_probs=288.5
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhh----hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc--cccch
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDL 76 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l 76 (382)
.+-++|+--+-|++|+.-+..+.+.+.... +...+-.+..++....+..-|+.+.-++...+-.+|.+. +...+
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 345678888899999999999998764422 222233355566677777888899999999988888754 44568
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc-C---hHhH
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-G---KDAT 150 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~---~~~~ 150 (382)
+|.++.+++|++..||..|++.+.++++....+ .+.+.+...+.++..|++..||.++- .+..+.+.+ . ....
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDIVTESASTFS 164 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHhccccccccC
Confidence 999999999999999999999999999987665 44577888999999999999987663 344333222 1 1234
Q ss_pred HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhh--HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--hh
Q 016814 151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VG 226 (382)
Q Consensus 151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~ 226 (382)
.+.++|.+.+.+.+.++..|...+.++..+-..-+.+. +.+.+++.+.++++|++..||.-.-..++.+...+. |.
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 58899999999999999999999999988765544432 236788999999999999999888887777766553 22
Q ss_pred h-hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhccccC
Q 016814 227 F-FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMG 302 (382)
Q Consensus 227 ~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~ 302 (382)
. -.+.+.+.+..-+..+++.++..|+..+..|++..|... +...++..++..+.++.. ..+..+...-+.+...++
T Consensus 245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 2 235688888888999999999999999999999887754 345566667777777665 467766655555544443
Q ss_pred hh-----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHH--HHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814 303 SE-----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV--EKTIRPCLVELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 303 ~~-----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~--~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 375 (382)
.+ .-...++..+.+.+.+...+.|.++++++..+....+++.+ .+.+.+.|.+.++|++.+|-..+...++.+
T Consensus 325 ~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i 404 (675)
T KOG0212|consen 325 SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASI 404 (675)
T ss_pred hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence 32 23357888899999999999999999999999999888753 478999999999999999988888877776
Q ss_pred HH
Q 016814 376 DH 377 (382)
Q Consensus 376 ~~ 377 (382)
+.
T Consensus 405 ~~ 406 (675)
T KOG0212|consen 405 CS 406 (675)
T ss_pred hc
Confidence 64
No 18
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=1.2e-18 Score=162.74 Aligned_cols=294 Identities=21% Similarity=0.233 Sum_probs=231.1
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC------cccccchHHHHHHh
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------EPTRMDLVPAYVRL 83 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~ 83 (382)
..+-|..|++.+..++.+...+...+.++|++..+..|+...||..|+..|.++.....+ ..+..+++|.+..+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 456788999999999999998888999999999999999999999999999888876654 23446799999999
Q ss_pred cCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhh-----hcCCCchHHHHHHHHHHHhhcccc---ChHhHHHhh
Q 016814 84 LRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE-----LSSDSSQHVRSALASVIMGMAPLL---GKDATIEQL 154 (382)
Q Consensus 84 l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~-----~~~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l 154 (382)
+.| ....||.+-+.+|+.+++....- +..-.+ ..+|++.+ ...+.. +.+.....+
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rF------le~~q~~~~~g~~n~~nse----------t~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRF------LELTQELRQAGMLNDPNSE----------TAPEQNYNTELQALHHTV 579 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHH------HHHHHHHHhcccccCcccc----------cccccccchHHHHHHHHH
Confidence 999 55779999999999998754222 111111 23444443 011111 111223444
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHH
Q 016814 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 234 (382)
Q Consensus 155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 234 (382)
-..+..++.|+.+.||.+.++++..++.+.|.+.-.+.+++++..+++|++|+.|.+..+.+..++-.+|..-..+.++|
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllP 659 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLP 659 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHH
Confidence 56667889999999999999999999999999887788999999999999999999999999999988999888899999
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHhCh-HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHH
Q 016814 235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 313 (382)
Q Consensus 235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~ 313 (382)
.+.+.+.|.++.|-..|+.++..+++.--- +....+++.....++-+|+.-+|.+++..+..+++.++.-...-++.|.
T Consensus 660 Ll~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~ 739 (1431)
T KOG1240|consen 660 LLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPL 739 (1431)
T ss_pred HHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehh
Confidence 999999999999999999999999874211 2234456667777888999889999999999999888866555566666
Q ss_pred HHhhcc
Q 016814 314 VINASK 319 (382)
Q Consensus 314 l~~~l~ 319 (382)
+-.++.
T Consensus 740 irpfl~ 745 (1431)
T KOG1240|consen 740 IRPFLE 745 (1431)
T ss_pred hHHhhh
Confidence 555554
No 19
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.8e-17 Score=145.08 Aligned_cols=348 Identities=18% Similarity=0.159 Sum_probs=267.3
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhh-hhhhhhhhhhhccCCCHHH-HHHHHHHHHHHHHHhCC--cccccchHH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDC-VAHILPVIVNFSQDKSWRV-RYMVANQLYELCEAVGP--EPTRMDLVP 78 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~ll~~l~~~~~d~~~~v-R~~a~~~l~~l~~~~~~--~~~~~~ll~ 78 (382)
.++++...-.-|..++..+..+....+.+.. ...++.-+.+...|+.... |+.+..+.......+|. +.+.-.++|
T Consensus 140 ~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp 219 (569)
T KOG1242|consen 140 LELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILP 219 (569)
T ss_pred HHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHH
Confidence 3445555667788888888877777665433 3346667777788876655 44677777777888885 344445788
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHH
Q 016814 79 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLP 156 (382)
Q Consensus 79 ~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~ 156 (382)
.++..+.|..+.||.++..+...+...++...++ .++|.+..-+.+..|.-+.+++..++.++.+.+.+. ..+.++|
T Consensus 220 ~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP 298 (569)
T KOG1242|consen 220 SILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIP 298 (569)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhH
Confidence 8888899999999999999999999988877554 456666665555599999999999999998887654 4589999
Q ss_pred HHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhH-HHHhhhchhhhHHHHHHH
Q 016814 157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP-LLASQLGVGFFDDKLGAL 235 (382)
Q Consensus 157 ~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~ 235 (382)
.+.+.+.|..++||+++..++.+++..+....+ +.++|.+.+.+.|++-.+..+.-.... .++..+.+ .-...++|+
T Consensus 299 ~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpi 376 (569)
T KOG1242|consen 299 VLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPI 376 (569)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc-hhHHHHHHH
Confidence 999999999999999999999999998887776 899999999999998555433322221 11122222 224578999
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHhCh----HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhH
Q 016814 236 CMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 311 (382)
Q Consensus 236 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l 311 (382)
+.+.+.+.+...+..++..++.+++.... ..|...++|.+...+.|+.+.+|..++.+++.+.+..|...+ ....
T Consensus 377 L~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~ 455 (569)
T KOG1242|consen 377 LKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLI 455 (569)
T ss_pred HHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccc
Confidence 99999999999999999999999998733 236677888888888899999999999999999999998755 8888
Q ss_pred HHHHhhccCCCc-cHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH
Q 016814 312 PVVINASKDRVP-NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE 355 (382)
Q Consensus 312 ~~l~~~l~d~~~-~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~ 355 (382)
|.+...+.+... .=|..+++.+..+...++.+... .++|.+..
T Consensus 456 p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~-~~~~~~~a 499 (569)
T KOG1242|consen 456 PELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVE-DILPEILA 499 (569)
T ss_pred cHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHH-HHHHHHHH
Confidence 988888766544 46888999999998888766543 34444443
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.82 E-value=4.6e-17 Score=163.84 Aligned_cols=337 Identities=13% Similarity=0.116 Sum_probs=263.8
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---H
Q 016814 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---L 110 (382)
Q Consensus 37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~ 110 (382)
..+.+..++...+..++..++..|..++..-.+ .......+|.+++++.+++..+|..++..++.++...... .
T Consensus 405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI 484 (2102)
T PLN03200 405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI 484 (2102)
T ss_pred chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344555666667789999999999998853111 1122347999999999999999999999999987633221 3
Q ss_pred HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-H-hH-HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814 111 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-AT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187 (382)
Q Consensus 111 ~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~-~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~ 187 (382)
.....+|.+.+++.+++..+|..++++++.++..-.. . .. ....+|.+.+++++.++.++..++.++..+.....
T Consensus 485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-- 562 (2102)
T PLN03200 485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-- 562 (2102)
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc--
Confidence 3457899999999999999999999999999863211 1 12 24678899999999999999999999999876533
Q ss_pred hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 016814 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 261 (382)
Q Consensus 188 ~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 261 (382)
+..++.+..++..++..++..+++.++.+......+... ..-+|.+..++.+++..+++.|+..+..++..
T Consensus 563 ---~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 563 ---AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639 (2102)
T ss_pred ---hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 234466778888888888899999998886644433211 24689999999999999999999999999863
Q ss_pred hCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHH
Q 016814 262 FGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQ 334 (382)
Q Consensus 262 ~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~ 334 (382)
-.. .......+|.++.++.+.+..++..+++++..+......+. .....+|.+++++++++..++..++.+|.
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALa 719 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALA 719 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 322 12445688999999999999999999999999986443331 23458999999999999999999999999
Q ss_pred HHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 335 SLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 335 ~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
.+...-... ......++.|.+++.+.++++|.+|+.|+..+...
T Consensus 720 nLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 720 NLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 999866433 34467789999999999999999999999888754
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.4e-16 Score=141.28 Aligned_cols=373 Identities=16% Similarity=0.196 Sum_probs=279.2
Q ss_pred cCCchHHHHHHHHHHHHHHhccCh---------h------------hhhhhhhhhhhhhc-------cCCCHHHHHHHHH
Q 016814 7 SNDQDSVRLLAVEGCAALGKLLEP---------Q------------DCVAHILPVIVNFS-------QDKSWRVRYMVAN 58 (382)
Q Consensus 7 ~d~~~~vR~~a~~~l~~l~~~~~~---------~------------~~~~~ll~~l~~~~-------~d~~~~vR~~a~~ 58 (382)
..+++.|...+++....++..--. + .-.+.++|.+.+++ .|.+|..-+++-.
T Consensus 269 ks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~ 348 (859)
T KOG1241|consen 269 KSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGV 348 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHH
Confidence 367789999999999877753211 1 11236788877765 2457999999999
Q ss_pred HHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHH
Q 016814 59 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALA 135 (382)
Q Consensus 59 ~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~ 135 (382)
+|.-+++..+++.. ..++|++.+-+++++|+-|.++.-++|.+...-.+. .+.+..+|.+..++.|++-.||.+++
T Consensus 349 CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaA 427 (859)
T KOG1241|consen 349 CLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAA 427 (859)
T ss_pred HHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHH
Confidence 99999998888775 589999999999999999999999999987755443 45567889999999999999999999
Q ss_pred HHHHhhccccC----hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-----------hhHhhhHHHHHHHH
Q 016814 136 SVIMGMAPLLG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----------DLLSQSLLPAIVEL 200 (382)
Q Consensus 136 ~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-----------~~~~~~llp~l~~~ 200 (382)
++++.++..+. ++...+.+++.+.+.++| .|.|-.++++++..+++.... +.+.+.++..|.+.
T Consensus 428 wtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 428 WTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 99999998775 334456677778888888 889999999999888754321 11223333333333
Q ss_pred hc--C-CCchHHHHHHHHhHHHHhhhchhhhH------HHHHHHHHHHhc-------c--chhHHHHHHHHHHHHHHHHh
Q 016814 201 AE--D-RHWRVRLAIIEYIPLLASQLGVGFFD------DKLGALCMQWLQ-------D--KVYSIRDAAANNLKRLAEEF 262 (382)
Q Consensus 201 ~~--d-~~~~vr~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~-------d--~~~~vr~~a~~~l~~~~~~~ 262 (382)
.. | .....|.++.+.|..+.+......+. ..++.-+.+.++ | .-.++....+..|+.+...+
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~ 586 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKV 586 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 22 2 34679999999999999866554332 111221222221 1 22356666778888888888
Q ss_pred ChH--HHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhc-cCCCccHHHHHHHHHHHH
Q 016814 263 GPE--WAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSL 336 (382)
Q Consensus 263 ~~~--~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i 336 (382)
+.+ ...++++..++..++. ++..+.+.|..+++.++..+|.. .|.+.+.|++...+ +-..+.|-.+++..++.+
T Consensus 587 ~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl 666 (859)
T KOG1241|consen 587 GSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDL 666 (859)
T ss_pred cccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 773 3567788888888887 44678889999999999999976 47889999999988 555677999999999999
Q ss_pred hhhhhHHH--HHHhHHHHHHHhcCCC--CccHHhHHHHHHHHHHHHhcc
Q 016814 337 IPIVDQSM--VEKTIRPCLVELTEDP--DVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 337 ~~~~~~~~--~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~~~~~~~~ 381 (382)
+..++.+. +...++..|.+.++.+ +.+|+-....+++.|+-..|.
T Consensus 667 ~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~ 715 (859)
T KOG1241|consen 667 ARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA 715 (859)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH
Confidence 99888763 5677888888877664 567888899999999888775
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.80 E-value=1.3e-16 Score=160.60 Aligned_cols=369 Identities=13% Similarity=0.124 Sum_probs=281.9
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchH
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLV 77 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll 77 (382)
.|++..+..++..++..+..++..-.. .......+|.+.+++.+.+..+|+.++..++.++..-.. .......+
T Consensus 411 ~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI 490 (2102)
T PLN03200 411 GLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGI 490 (2102)
T ss_pred hhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 455556789999999999999875322 112333678889999988999999999999999852221 11224689
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-H-HH-HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814 78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-E-LA-IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 154 (382)
Q Consensus 78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-~-~~-~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 154 (382)
|.+.+++.+++..+|+.|++++++++..-.. . .+ ....+|.+.+++++.++.++..++.+|..+...-.. ..
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~~ 565 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----AT 565 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----hH
Confidence 9999999999999999999999999863211 1 22 236889999999999999999999999999764332 23
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH------hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---h
Q 016814 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---V 225 (382)
Q Consensus 155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~------~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~ 225 (382)
++.+..++..+++.++..++..++.+......+.. ....+|.+.+++++++..++..++..+..++..-. .
T Consensus 566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 35567778777889999999988888665444322 13478999999999999999999999999875322 1
Q ss_pred hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814 226 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 301 (382)
Q Consensus 226 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 301 (382)
.......+|.+..++.+.+.++++.++.+|+.+......+. .....+|.+.+++++++..+++.++.++..+...-
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~ 725 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP 725 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc
Confidence 23345678889999999999999999999999996333221 23458899999999999999999999999998654
Q ss_pred Chh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH-H-----HHhHHHHHHHhcCCCCccHHhH--HHHH
Q 016814 302 GSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM-V-----EKTIRPCLVELTEDPDVDVRFF--ATQA 371 (382)
Q Consensus 302 ~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~-~-----~~~i~~~l~~l~~d~~~~vr~~--a~~a 371 (382)
... ......+|.+..++++.++.+|..|+.+|..+......++ + ....+..|..+++..|.+.-.. |..+
T Consensus 726 e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~ 805 (2102)
T PLN03200 726 EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEA 805 (2102)
T ss_pred hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHH
Confidence 322 3446779999999999999999999999999998776543 2 2455666667776666665444 7777
Q ss_pred HHHHHH
Q 016814 372 IQSIDH 377 (382)
Q Consensus 372 l~~~~~ 377 (382)
+..++.
T Consensus 806 l~~l~~ 811 (2102)
T PLN03200 806 LALLAR 811 (2102)
T ss_pred HHHHHh
Confidence 777765
No 23
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=4.1e-18 Score=159.18 Aligned_cols=305 Identities=19% Similarity=0.213 Sum_probs=221.6
Q ss_pred hhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH------H
Q 016814 37 ILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------E 109 (382)
Q Consensus 37 ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~------~ 109 (382)
+++++..++.. +....|..|++.|..++.....+.....++|.++.++.|+...||..|+.+|..+.....+ .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 44444444432 3445677788888888887777776677888888888888888888888887777654421 2
Q ss_pred HHHHhhhHhhhhhcCC-CchHHHHHHHHHHHhhccccChHhHHHhhHHHHHH-----hhcCCChHHHHHHHHhhHHhhhh
Q 016814 110 LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS-----LLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 110 ~~~~~il~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-----~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
.+.+.++|.+..++.| ....||.+.+.+|+.++.... .++..-.. +.++++.+- ...-...
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~------rFle~~q~~~~~g~~n~~nset-------~~~~~~~ 569 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY------RFLELTQELRQAGMLNDPNSET-------APEQNYN 569 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH------HHHHHHHHHHhcccccCccccc-------ccccccc
Confidence 4566778888888888 566788888888888775322 11111111 234433320 0000000
Q ss_pred hchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814 184 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 263 (382)
Q Consensus 184 ~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 263 (382)
-+...+.+.+-..+..++.|+.+-||+++++.+..++..+|.+.-.+.+++++..+|+|.+|..|.+-.+.+.-++-..|
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 01112224445556778899999999999999999999999998889999999999999999999999999988888888
Q ss_pred hHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC-hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814 264 PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 264 ~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
.....+.++|.+.+.+.|+...|-..|+.++..|++.-- .+....+++..+..++..+|.-+|..++..+..+...++.
T Consensus 650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 877778899999999999999999999999999986422 3346677888888899999999999999999999988876
Q ss_pred HHHHHhHHHHHH
Q 016814 343 SMVEKTIRPCLV 354 (382)
Q Consensus 343 ~~~~~~i~~~l~ 354 (382)
.+..-.+.|.+.
T Consensus 730 advyc~l~P~ir 741 (1431)
T KOG1240|consen 730 ADVYCKLMPLIR 741 (1431)
T ss_pred hhheEEeehhhH
Confidence 543333333333
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.7e-16 Score=137.65 Aligned_cols=364 Identities=16% Similarity=0.198 Sum_probs=266.9
Q ss_pred hHHHHHHHHHHHHHHhccChhh--hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCC
Q 016814 11 DSVRLLAVEGCAALGKLLEPQD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRD 86 (382)
Q Consensus 11 ~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~l~d 86 (382)
..-|+.++..+.+.+-.++.+. ....++|-+..++.|++.++|..||+.+.++++....+.. .+.+...+.++..|
T Consensus 57 ~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaD 136 (675)
T KOG0212|consen 57 ANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSAD 136 (675)
T ss_pred cccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcC
Confidence 3344444444444444444432 4566778888899999999999999999999998776543 45688888889999
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHH
Q 016814 87 NEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLS 160 (382)
Q Consensus 87 ~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~ 160 (382)
++..||.+ ++.+..+.+.+..+ ...+.++|.+.+-+.+.++.+|...++++..+-..-+-+. ..+.+++.+.+
T Consensus 137 sd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~ 215 (675)
T KOG0212|consen 137 SDQNVRGG-AELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFN 215 (675)
T ss_pred CccccccH-HHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHH
Confidence 99999876 46777776654332 3356899999999999999999999999999876655544 34889999999
Q ss_pred hhcCCChHHHHHHHHhhHHhhhhhchhhH---hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH--HHHHHH
Q 016814 161 LLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGAL 235 (382)
Q Consensus 161 ~l~d~~~~vr~~~~~~l~~~~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~ 235 (382)
+++|++++||..+-..++.+...+..+.- ...+++.+..-+.++++.++..++.++..+.+..|..... ..++..
T Consensus 216 ~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~ 295 (675)
T KOG0212|consen 216 MLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTA 295 (675)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhh
Confidence 99999999999888888887665532211 1456777777778899999999999999999877766533 456666
Q ss_pred HHHHhccchh-HHHHHHHHHHHHHHHHhChHHH-----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--hhh
Q 016814 236 CMQWLQDKVY-SIRDAAANNLKRLAEEFGPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITC 307 (382)
Q Consensus 236 l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~ 307 (382)
+..++.|.+. .++..+...-+.+.+.++.+.. ...++..+...+.+.....|.+++.++..+-...+.+ .+.
T Consensus 296 iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~ 375 (675)
T KOG0212|consen 296 ILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN 375 (675)
T ss_pred cccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc
Confidence 6677777666 5777777666666665544321 2357888889999999999999999999998888876 466
Q ss_pred hhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 308 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
..+++.+++-+.|++..|-..++..+..++..-....+ .+++..|.++......-++..+.-.+.++.
T Consensus 376 ~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 376 DSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred cHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 78999999999999999999999999999875443222 333444444433333333334444444433
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.78 E-value=3.3e-15 Score=136.92 Aligned_cols=381 Identities=17% Similarity=0.214 Sum_probs=259.9
Q ss_pred CcchhccCCchHHHHHHHHHHHHHHhccChhhh---------------------------------------------hh
Q 016814 1 MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDC---------------------------------------------VA 35 (382)
Q Consensus 1 ~~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~---------------------------------------------~~ 35 (382)
|+-+++.|.+++|...|+++++-++...+.+.. -+
T Consensus 51 ~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~ 130 (1233)
T KOG1824|consen 51 MLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCK 130 (1233)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHH
Confidence 466889999999999999999987766543211 12
Q ss_pred hhhhhhhhhc--cCCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH
Q 016814 36 HILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 111 (382)
Q Consensus 36 ~ll~~l~~~~--~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 111 (382)
.+.|.+.+.+ +.+...++..++..++.+...+|.- ++...++..+...+..+-..||+.++-+++.++..++.+.+
T Consensus 131 ~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly 210 (1233)
T KOG1824|consen 131 RITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY 210 (1233)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 2333333333 2344458888888888888888762 23445777777777888889999999999999999998877
Q ss_pred HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhh---cCCChHHHHHHHHhhHHhhhhhch
Q 016814 112 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGI 186 (382)
Q Consensus 112 ~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l---~d~~~~vr~~~~~~l~~~~~~~~~ 186 (382)
...+-..+..+-+......-+..+++++.++...|... ..+.+.|.+.+++ +..+.+.|+.++++++.+....+.
T Consensus 211 ~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 211 VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 65555555556666666666778899999988777543 3478889999988 677899999999999999877654
Q ss_pred hhH--hhhHHHHHHHHh----------------------------------cCCCchHHHHHHHHhHHHHhhhch--hhh
Q 016814 187 DLL--SQSLLPAIVELA----------------------------------EDRHWRVRLAIIEYIPLLASQLGV--GFF 228 (382)
Q Consensus 187 ~~~--~~~llp~l~~~~----------------------------------~d~~~~vr~~~~~~l~~l~~~~~~--~~~ 228 (382)
+-. .+.++..+.+.+ .|-+|.||+++++++..+.....+ ..+
T Consensus 291 ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~ 370 (1233)
T KOG1824|consen 291 EILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDF 370 (1233)
T ss_pred hhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 321 123333333322 123699999999999877643321 123
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--------------------------------------------
Q 016814 229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-------------------------------------------- 264 (382)
Q Consensus 229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-------------------------------------------- 264 (382)
.+.+-|.+...+++.+..|+...+++.-.+....+.
T Consensus 371 ~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~k 450 (1233)
T KOG1824|consen 371 YQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVK 450 (1233)
T ss_pred HHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhcccc
Confidence 345556666666666666665555555444433210
Q ss_pred --------------------HHHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccChhhh---hhhhHHHHHhhcc
Q 016814 265 --------------------EWAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEIT---CSRLLPVVINASK 319 (382)
Q Consensus 265 --------------------~~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~l~ 319 (382)
......++|.+...+.|.+ ...+..++.++.......+++.| ...+.|.+.....
T Consensus 451 t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~ 530 (1233)
T KOG1824|consen 451 TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVG 530 (1233)
T ss_pred chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhc
Confidence 0011235555666666654 56777777777777767777644 4566788888889
Q ss_pred CCCccHHHHHHHHHHHHhhhhhH---------HHHHHhHHHHHHH-h-cCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 320 DRVPNIKFNVAKVLQSLIPIVDQ---------SMVEKTIRPCLVE-L-TEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 320 d~~~~vR~~a~~~l~~i~~~~~~---------~~~~~~i~~~l~~-l-~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
|+-+.+-..|+.....+...+.+ ..+...+.....+ + .+|.|.+||..|+.+++.+...+|+
T Consensus 531 d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD 603 (1233)
T KOG1824|consen 531 DPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD 603 (1233)
T ss_pred CchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh
Confidence 99998888888888887765532 2233333333333 3 5789999999999999999988875
No 26
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.77 E-value=2.8e-15 Score=137.41 Aligned_cols=373 Identities=15% Similarity=0.165 Sum_probs=257.8
Q ss_pred cCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhc
Q 016814 7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLL 84 (382)
Q Consensus 7 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~l 84 (382)
+..-..||+.|+-+++.++...+.+.+...+-.++..+.+..+...-...+++|+.++...|.+.. ...+.|.+.+++
T Consensus 184 ~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~ 263 (1233)
T KOG1824|consen 184 QSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYC 263 (1233)
T ss_pred cChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHh
Confidence 445678999999999999999888766666666677777777777777889999999998887543 346899999988
Q ss_pred ---CCCcHHHHHHHHHHHHHHHHhhCHHH--HHHhhhHhhhhhc----------------------------------CC
Q 016814 85 ---RDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELS----------------------------------SD 125 (382)
Q Consensus 85 ---~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~~----------------------------------~d 125 (382)
+..+.+.|+.++++++.|...++.+. +...++..+.+.+ +|
T Consensus 264 ~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD 343 (1233)
T KOG1824|consen 264 NKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDED 343 (1233)
T ss_pred cccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccc
Confidence 66678999999999999999998872 2222333332222 24
Q ss_pred CchHHHHHHHHHHHhhccccCh--HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--------h--------
Q 016814 126 SSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------D-------- 187 (382)
Q Consensus 126 ~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--------~-------- 187 (382)
-+|.||+++++++..+...-.. ..+.+.+-|.+...+++..++|+...+.++-.+....+. |
T Consensus 344 ~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~ 423 (1233)
T KOG1824|consen 344 MSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTP 423 (1233)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCc
Confidence 4699999999999987642211 113355667777777777888887777776665443221 0
Q ss_pred ---h-H---hhhHHHHHHHHhcCCCchHHH-------------------------------------------HHHHHhH
Q 016814 188 ---L-L---SQSLLPAIVELAEDRHWRVRL-------------------------------------------AIIEYIP 217 (382)
Q Consensus 188 ---~-~---~~~llp~l~~~~~d~~~~vr~-------------------------------------------~~~~~l~ 217 (382)
. + ...++..+..-+++++.+.|. .++..+.
T Consensus 424 s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~ 503 (1233)
T KOG1824|consen 424 SDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLY 503 (1233)
T ss_pred cchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHH
Confidence 0 0 011222222223333333333 3333444
Q ss_pred HHHhhhchhhhH---HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---------HHHHhhhHHHHHhhhc--Ccc
Q 016814 218 LLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------EWAMQHITPQVLEMIN--NPH 283 (382)
Q Consensus 218 ~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------~~~~~~l~~~l~~~l~--~~~ 283 (382)
......+++.|. +.+.|.+.....|+-+.+-..|+.....+++...+ ..+...++...++.++ |.+
T Consensus 504 ~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~D 583 (1233)
T KOG1824|consen 504 SALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSD 583 (1233)
T ss_pred HHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhccccc
Confidence 333444444444 45677777788899999999999998888886532 3345566666667665 566
Q ss_pred hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh---hhHHHHHHhHHHHHHHhcC
Q 016814 284 YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI---VDQSMVEKTIRPCLVELTE 358 (382)
Q Consensus 284 ~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~---~~~~~~~~~i~~~l~~l~~ 358 (382)
..||+.|+.+++++.-.+|.. ......+|.+...++. ...|..|++++..|+.. +.-......++|.+...+.
T Consensus 584 qeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flr 661 (1233)
T KOG1824|consen 584 QEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLR 661 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHH
Confidence 899999999999998888832 3455667777777754 67999999999999753 2223345778888888777
Q ss_pred CCCccHHhHHHHHHHHHHHHhcc
Q 016814 359 DPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 359 d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
......|.....++..+...+|.
T Consensus 662 K~~r~lr~~~l~a~~~L~~~~~~ 684 (1233)
T KOG1824|consen 662 KNQRALRLATLTALDKLVKNYSD 684 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 77778899999999888887764
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.77 E-value=6.5e-16 Score=144.91 Aligned_cols=352 Identities=17% Similarity=0.136 Sum_probs=246.1
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 89 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~ 89 (382)
++..|..++.-+..+.. .|.+ .+...+-+.+++..++...|+.+.-.+..+...-++ ...-+.+.+.+-+.++++
T Consensus 19 ~~~~~~~~l~kli~~~~-~G~~--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--~~~l~~n~l~kdl~~~n~ 93 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMM-LGYD--ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--LLILIINSLQKDLNSPNP 93 (526)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHHHCSSSH
T ss_pred CHHHHHHHHHHHHHHHH-cCCC--CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHhhcCCCH
Confidence 66666666655554433 2221 246667777788889999999888887776642111 122367777788889999
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHH
Q 016814 90 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV 169 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 169 (382)
.+|..|+.+++.+. .+ ...+.+.|.+.+++.|+++.||..|+.++..+....+ +.....+++.+.+++.|+++.|
T Consensus 94 ~~~~lAL~~l~~i~---~~-~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-~~~~~~~~~~l~~lL~d~~~~V 168 (526)
T PF01602_consen 94 YIRGLALRTLSNIR---TP-EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP-DLVEDELIPKLKQLLSDKDPSV 168 (526)
T ss_dssp HHHHHHHHHHHHH----SH-HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-CCHHGGHHHHHHHHTTHSSHHH
T ss_pred HHHHHHHhhhhhhc---cc-chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhhccCCcchh
Confidence 99999999999875 23 3446788999999999999999999999999886533 2222227899999999999999
Q ss_pred HHHHHHhhHHhhhhhchh--hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHH
Q 016814 170 RLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247 (382)
Q Consensus 170 r~~~~~~l~~~~~~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 247 (382)
+.+++..+..+ +.-+.. .+...+.+.+.+++.+.++..+..+++.+..++..-........+++.+...+.+.++.|
T Consensus 169 ~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V 247 (526)
T PF01602_consen 169 VSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSV 247 (526)
T ss_dssp HHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHH
Confidence 99999988888 211111 233556666666668888888888888888765422222111467888888888889999
Q ss_pred HHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHH
Q 016814 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF 327 (382)
Q Consensus 248 r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~ 327 (382)
...++.++..+.. .......+++.+..++.++++.+|..++..+..++...... .. .....+..+..+++..+|.
T Consensus 248 ~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~-v~-~~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 248 VYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA-VF-NQSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp HHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH-HG-THHHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh-hh-hhhhhhheecCCCChhHHH
Confidence 8888888775543 22255678888999999888999999999999988766332 22 3333344445577888999
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCC-CccHHhHHHHHHHHHHHHhcc
Q 016814 328 NVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDP-DVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 328 ~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~~~~~~~~ 381 (382)
.+++.+..+...- ....+++.|.+.+.+. +.++|..+.++++.++....+
T Consensus 323 ~~l~lL~~l~~~~----n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 323 KALDLLYKLANES----NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHHHHHHHH--HH----HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred HHHHHHhhccccc----chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 9999988887533 3355777777776444 777999999999988876543
No 28
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=9e-16 Score=134.91 Aligned_cols=364 Identities=14% Similarity=0.144 Sum_probs=267.2
Q ss_pred CchHHHHHHHHHHHHHHhccC--h--hhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHH
Q 016814 9 DQDSVRLLAVEGCAALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAY 80 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~~--~--~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l 80 (382)
++++.+..+...+..+..... + +.....++|.+.+++. +.++.++..++-+|.+++....+ -......+|.|
T Consensus 78 ~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~f 157 (514)
T KOG0166|consen 78 DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIF 157 (514)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHH
Confidence 345557777777777666433 2 3345568888888775 77899999999999999974433 22234589999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCCch-HHHHHHHHHHHhhccccChH---hHHHh
Q 016814 81 VRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGKD---ATIEQ 153 (382)
Q Consensus 81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~~---~~~~~ 153 (382)
+.++.+++..||+.|.++|++++...+ .......+++.+..++..... ...+.+.+++..++..-.+. .....
T Consensus 158 i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~ 237 (514)
T KOG0166|consen 158 IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP 237 (514)
T ss_pred HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 999999999999999999999976432 334445677777777766655 67788899999999765321 24578
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hh
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF 227 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~ 227 (382)
++|.+..++.+.+++|...+++++..+....... .+...+.|.+..++...+..++..+++.++.++..-+. ..
T Consensus 238 iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~v 317 (514)
T KOG0166|consen 238 ILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVV 317 (514)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHH
Confidence 9999999999999999999999999887643321 11235789999999999999999999999997653321 22
Q ss_pred hHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChH-----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814 228 FDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE-----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 301 (382)
Q Consensus 228 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 301 (382)
.....+|.+..++. .+...+|+.|+..++.+.. |.. .+...++|.++..+......+|..|+++++.++...
T Consensus 318 i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 318 INSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred HhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 33567899999888 6677799999999999986 442 244579999999999999999999999999987665
Q ss_pred Chhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH------HHH-----HHhHHHHHHHhcCCCCccHHh
Q 016814 302 GSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SMV-----EKTIRPCLVELTEDPDVDVRF 366 (382)
Q Consensus 302 ~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~------~~~-----~~~i~~~l~~l~~d~~~~vr~ 366 (382)
.++. +..-+++.+..+|.-....+-..++.++..+...-.. ..+ ...-+..+..+....+.++..
T Consensus 396 ~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~ 475 (514)
T KOG0166|consen 396 TPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYK 475 (514)
T ss_pred CHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHH
Confidence 5542 3345788888888666666667777777777653221 111 124455555666666667777
Q ss_pred HHHHHHHH
Q 016814 367 FATQAIQS 374 (382)
Q Consensus 367 ~a~~al~~ 374 (382)
.|.+.+..
T Consensus 476 ~A~~II~~ 483 (514)
T KOG0166|consen 476 KAYKIIDT 483 (514)
T ss_pred HHHHHHHH
Confidence 66666554
No 29
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.74 E-value=3.5e-14 Score=123.87 Aligned_cols=374 Identities=13% Similarity=0.110 Sum_probs=272.3
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCC-HHHHHHHHHHHHHHHHHhCCccccc---chHHH
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGPEPTRM---DLVPA 79 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~~~~~~---~ll~~ 79 (382)
+-+..+.|..-..|++.++.+++.--+...|+.++..+.....|+. ..++..++..++.+++...++...+ .++-.
T Consensus 101 ~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~a 180 (858)
T COG5215 101 RALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFA 180 (858)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHH
Confidence 3456778888899999999999987777788998888777776655 4678899999999998887744322 23333
Q ss_pred HH-Hhc-CCCcHHHHHHHHHHHHHHHHh----hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC---hHhH
Q 016814 80 YV-RLL-RDNEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDAT 150 (382)
Q Consensus 80 l~-~~l-~d~~~~VR~~a~~~l~~l~~~----~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~ 150 (382)
+. ... +.++..||.+++.+|..-+.. +..+...+.++....+..+.++.++..++..++..+....- +...
T Consensus 181 iv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym 260 (858)
T COG5215 181 IVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM 260 (858)
T ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333 346788999999999873322 33344567888999999999999999999999998874322 1112
Q ss_pred HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh-ch----h--------------hHhhhHHHHHHHHhc-------CC
Q 016814 151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI----D--------------LLSQSLLPAIVELAE-------DR 204 (382)
Q Consensus 151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~-~~----~--------------~~~~~llp~l~~~~~-------d~ 204 (382)
.+.+..+....+++++++|...+++....+++.- .. . .-...++|.+++++. ++
T Consensus 261 E~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D 340 (858)
T COG5215 261 ENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD 340 (858)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 2445555666788999999999998887765431 00 0 012458899888873 46
Q ss_pred CchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcC
Q 016814 205 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINN 281 (382)
Q Consensus 205 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~ 281 (382)
+|.+..++..++..+++..|.....+ ++..+.+.+..++|.-|++++.++|.+...-.. ..+..+.+|.+.....|
T Consensus 341 dWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D 419 (858)
T COG5215 341 DWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD 419 (858)
T ss_pred ccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc
Confidence 79999999999999999888877665 888888999999999999999999999863222 23556788888888889
Q ss_pred cchHHHHHHHHHHHHhccccChh----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---------HHHHh
Q 016814 282 PHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MVEKT 348 (382)
Q Consensus 282 ~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~ 348 (382)
+.-.++.+++++++.++...... ....-.....+..+.| +|.+..++.+....+..++.+. .+...
T Consensus 420 ~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~a 498 (858)
T COG5215 420 SCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLA 498 (858)
T ss_pred ceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHH
Confidence 98889999999999998765432 1122223334455666 5778888888888888877643 12234
Q ss_pred HHHHHHHh--cCCCCccHHhHHHHHHHHHHHHh
Q 016814 349 IRPCLVEL--TEDPDVDVRFFATQAIQSIDHVM 379 (382)
Q Consensus 349 i~~~l~~l--~~d~~~~vr~~a~~al~~~~~~~ 379 (382)
++..|.+- ..+.+.+.|..+..+++.+...-
T Consensus 499 i~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~ 531 (858)
T COG5215 499 ILNALVKGTELALNESNLRVSLFSALGTLILIC 531 (858)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence 44445442 34778889999999999887643
No 30
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.73 E-value=2.2e-15 Score=132.30 Aligned_cols=342 Identities=14% Similarity=0.161 Sum_probs=211.4
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChh----hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHh--CCcccccchHHH
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPA 79 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~--~~~~~~~~ll~~ 79 (382)
.+|+....|+.++.....+...++.. ..+..++.-+....++++..+. ....+++.+.-.+ ....+...++..
T Consensus 530 ~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivSt 608 (975)
T COG5181 530 YSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVST 608 (975)
T ss_pred ccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCcchHHHHHH
Confidence 56777788888888887777766642 2333344444444443332221 1222333332222 223444568888
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHh---hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH---hHHHh
Q 016814 80 YVRLLRDNEAEVRIAAAGKVTKFCRI---LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQ 153 (382)
Q Consensus 80 l~~~l~d~~~~VR~~a~~~l~~l~~~---~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ 153 (382)
++..++++.+.||..|++..+.++.. |+......++=-.+.+-+....++|--..++++..+....+-. .-...
T Consensus 609 iL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ 688 (975)
T COG5181 609 ILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISG 688 (975)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhh
Confidence 89999999999999999998888764 5555555556566778888889999999999999887766532 23468
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhh----chhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 229 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~----~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 229 (382)
++|-+...+++....|..+.+..++.++..- |...| -.+--.+...+++.+..+|+++.+.++-++..+|+....
T Consensus 689 ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW-MRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL 767 (975)
T COG5181 689 ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW-MRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVL 767 (975)
T ss_pred ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHH
Confidence 8899999999999999999999999987653 33334 345555667778888899999999999999999986322
Q ss_pred H-------------------------------HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHH
Q 016814 230 D-------------------------------KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVL 276 (382)
Q Consensus 230 ~-------------------------------~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~ 276 (382)
. .++|.++.-...++..|+...++++..+.+..|.. .+.-.+.|.+-
T Consensus 768 ~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlle 847 (975)
T COG5181 768 DILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLE 847 (975)
T ss_pred HHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 1 12333333333344445555555555554444432 23334555555
Q ss_pred hhhcCcchHHHHHHHHHHHHhccccCh---hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhH
Q 016814 277 EMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTI 349 (382)
Q Consensus 277 ~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i 349 (382)
..+.|.+...|++|...+..++-++.. +...-+++..++...-+++|.+-.+..+.+..+...+|...+-.++
T Consensus 848 DAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv 923 (975)
T COG5181 848 DALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYV 923 (975)
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 555555555555555555555544321 2334445555555555555555555555555555555544433333
No 31
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.6e-15 Score=130.49 Aligned_cols=339 Identities=17% Similarity=0.155 Sum_probs=253.9
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHH---
Q 016814 38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE--- 109 (382)
Q Consensus 38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~--- 109 (382)
.+...+.+...+...+..+...+..+...-... .....++|.+++++. +.++.++..|+++|.+++..-...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 455555556666666777777777766544331 223468999999996 667999999999999998744322
Q ss_pred HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhhcCCCh-HHHHHHHHhhHHhhhhhc
Q 016814 110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG 185 (382)
Q Consensus 110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~~~~~~~ 185 (382)
.+....+|.|..++.+++..|++.++++++.++..-.. + ......++.+..++..... ...+.+.+++..++..-.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 44567899999999999999999999999999854331 1 2234555666666665554 677788899999887652
Q ss_pred h-h--hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814 186 I-D--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 259 (382)
Q Consensus 186 ~-~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 259 (382)
+ . .....++|.+..++.+.+..|...++..++++...-.+. .....++|.+..+|..++..++..|+.++|.++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 2 1 223789999999999999999999999999998643321 233467899999999999999999999999987
Q ss_pred HHhChHH-----HHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHH
Q 016814 260 EEFGPEW-----AMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVA 330 (382)
Q Consensus 260 ~~~~~~~-----~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~ 330 (382)
. |.+. .....+|.+..++. ++...+|..|+++++.++-.-... .+...++|.++..+......+|..|+
T Consensus 308 t--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 308 T--GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred e--ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 5 4332 34567888988888 556779999999999987532221 34568899999999999999999999
Q ss_pred HHHHHHhhhhhHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 331 KVLQSLIPIVDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 331 ~~l~~i~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
.+++.+...-.++. ....+++.+..++.=+|.++-..+..++..+-.+
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 99999876555442 2356788888888767777777777777766543
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=99.72 E-value=1.3e-13 Score=129.71 Aligned_cols=356 Identities=14% Similarity=0.101 Sum_probs=216.7
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 82 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 82 (382)
++=++|++|.+|-.|++.++.+-. ....+.+.+.+.+++.|+++.||+.|+-++.++-...++......+++.+.+
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~ 186 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE 186 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH
Confidence 344778999999999998877543 4556778888899999999999999999999987655543333457888999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 161 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 161 (382)
++.|+++.|...|+.+|..+....+.. ......+..+...+.+.+++-+...++.+......-. .....++..+...
T Consensus 187 LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~--~e~~~il~~l~~~ 264 (746)
T PTZ00429 187 LLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK--ESAETLLTRVLPR 264 (746)
T ss_pred HhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHH
Confidence 999999999999999999987654322 1223344555566667778888888887765443211 1235677888888
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchhhHh---hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHH--------
Q 016814 162 LKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD-------- 230 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~~---~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~-------- 230 (382)
++..++.|.-++++.+..+.....++... ..+.+.+..+ .+.++.+|..+++.+..+.... +..+.+
T Consensus 265 Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~ 342 (746)
T PTZ00429 265 MSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVR 342 (746)
T ss_pred hcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcc
Confidence 88889999999999988876554333221 2233444455 4566788999998887776543 222222
Q ss_pred -------------------------HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchH
Q 016814 231 -------------------------KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 285 (382)
Q Consensus 231 -------------------------~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 285 (382)
.++.-+.....|.+.+++..++.+++.++..+. ...+.++..+.+++.++...
T Consensus 343 ~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~--~~a~~cV~~Ll~ll~~~~~~ 420 (746)
T PTZ00429 343 YSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD--SVAPDCANLLLQIVDRRPEL 420 (746)
T ss_pred cCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCchh
Confidence 122223333344455555555555555554432 12344555555555443322
Q ss_pred HHHHHHHHHHHhccccChhhhhhhhHHHHHhhc---cCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCc
Q 016814 286 YRMTILRAISLLAPVMGSEITCSRLLPVVINAS---KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362 (382)
Q Consensus 286 ~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l---~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~ 362 (382)
+. .++..+..+.+.+... .+++.+...+ .=..+..|.+.++.+|+.+..+.. ...++..+..-..+.+.
T Consensus 421 v~-e~i~vik~IlrkyP~~----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~ 492 (746)
T PTZ00429 421 LP-QVVTAAKDIVRKYPEL----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQ 492 (746)
T ss_pred HH-HHHHHHHHHHHHCccH----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCH
Confidence 22 2344444444443332 1233333221 112345666666666666554432 23344333333344566
Q ss_pred cHHhHHHHHHHHHH
Q 016814 363 DVRFFATQAIQSID 376 (382)
Q Consensus 363 ~vr~~a~~al~~~~ 376 (382)
.||.....+...+.
T Consensus 493 ~VqlqlLta~vKlf 506 (746)
T PTZ00429 493 RVQLAILSAAVKMF 506 (746)
T ss_pred HHHHHHHHHHHHHH
Confidence 67766655555443
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.72 E-value=6.1e-14 Score=131.90 Aligned_cols=355 Identities=14% Similarity=0.085 Sum_probs=212.7
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 83 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~ 83 (382)
+.++..+...|+.|++-+...... |. + ...+.+-+.+++..++..+|+.+.-.+..+++.-++.. --.++.+.+-
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~-G~-D-vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--lLaINtl~KD 113 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTM-GR-D-VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--LLAVNTFLQD 113 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHC-CC-C-chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--HHHHHHHHHH
Confidence 344555666677777655544331 22 2 34566667778888899999999999888765322211 2358888889
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhc
Q 016814 84 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK 163 (382)
Q Consensus 84 l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 163 (382)
++|+++.+|..|+++++.+. ...+.+.+++.+.+.+.|+++.||..|+.++..+....+.-.....+++.+.+++.
T Consensus 114 l~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~ 189 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN 189 (746)
T ss_pred cCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhc
Confidence 99999999999999888752 24455678899999999999999999999999987654422223467788899999
Q ss_pred CCChHHHHHHHHhhHHhhhhhchhhH--hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc
Q 016814 164 DEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 241 (382)
Q Consensus 164 d~~~~vr~~~~~~l~~~~~~~~~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 241 (382)
|.++.|..+++.++..+...-+ +.+ ....+..+...+.+-+..-+..+++.+..... ..+.....++..+...++
T Consensus 190 D~dp~Vv~nAl~aL~eI~~~~~-~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P--~~~~e~~~il~~l~~~Lq 266 (746)
T PTZ00429 190 DNNPVVASNAAAIVCEVNDYGS-EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP--SDKESAETLLTRVLPRMS 266 (746)
T ss_pred CCCccHHHHHHHHHHHHHHhCc-hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHhc
Confidence 9999999999999998865432 212 12222223333333333333444444422110 001112345555666666
Q ss_pred cchhHHHHHHHHHHHHHHHHhChHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc
Q 016814 242 DKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 318 (382)
Q Consensus 242 d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l 318 (382)
..+..|.-+|++++-.+.....++.. ...+.+.++.+ .++...+|..++..+..+..... ..+.. -+..+....
T Consensus 267 ~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~-~~~~Ff~~~ 343 (746)
T PTZ00429 267 HQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRT-NLDSFYVRY 343 (746)
T ss_pred CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHH-HHHhhhccc
Confidence 66777777777766666543322211 11122223333 33445666666666665554332 22222 233444445
Q ss_pred cCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 319 KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 319 ~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
+|+.. +|...++.|..++..- ....++..|.+...|.+.+++..+.++++.++..
T Consensus 344 ~Dp~y-IK~~KLeIL~~Lane~----Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 344 SDPPF-VKLEKLRLLLKLVTPS----VAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred CCcHH-HHHHHHHHHHHHcCcc----cHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 55543 6666666666654322 2244555555666666666666666666666543
No 34
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=2.7e-13 Score=130.29 Aligned_cols=369 Identities=12% Similarity=0.122 Sum_probs=239.4
Q ss_pred chHHHHHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcC
Q 016814 10 QDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR 85 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~ 85 (382)
...-|+.|+-.++.+++..+. +.....++|.+..+--|++..|+.++....+.+...-.. +.+.++++.-++..+.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 445688899999999987654 334566889899998999999999999999988753222 4455678888888889
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCHHHHHH---hhhHhhhhhcCCCchHHHHHHHHH---HHhhccccC-------hHhHHH
Q 016814 86 DNEAEVRIAAAGKVTKFCRILNPELAIQ---HILPCVKELSSDSSQHVRSALASV---IMGMAPLLG-------KDATIE 152 (382)
Q Consensus 86 d~~~~VR~~a~~~l~~l~~~~~~~~~~~---~il~~l~~~~~d~~~~vr~~a~~~---l~~l~~~~~-------~~~~~~ 152 (382)
+..|+||++++-++..+...-+.+.+.+ +++..+....+|-...||.++-++ ++.++-.+. .....+
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence 9999999999999999998877665543 445555566788888899887554 444432222 233567
Q ss_pred hhHHHHHH-hhcCCChHHHHHHHHhhHHhhhhhchhh--HhhhHHHHHHHHhcCCCch-------------------HHH
Q 016814 153 QLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWR-------------------VRL 210 (382)
Q Consensus 153 ~l~~~l~~-~l~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~llp~l~~~~~d~~~~-------------------vr~ 210 (382)
.++|++.. .+....++||+.++..+..+.+..|..- ....++|.+......-.+. .|.
T Consensus 1130 ~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~ 1209 (1702)
T KOG0915|consen 1130 IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRA 1209 (1702)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence 78888874 3446789999999999999988877531 2245666665553322111 222
Q ss_pred HHHH------HhHHHHhhhchhhhHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcC
Q 016814 211 AIIE------YIPLLASQLGVGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINN 281 (382)
Q Consensus 211 ~~~~------~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~ 281 (382)
.+++ .+..+...++... ..++.|.+.++++.. .-..|-+++..+..++..+|.| .+...++..++..++|
T Consensus 1210 s~aksspmmeTi~~ci~~iD~~v-Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d 1288 (1702)
T KOG0915|consen 1210 SAAKSSPMMETINKCINYIDISV-LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD 1288 (1702)
T ss_pred hhhcCCcHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc
Confidence 2222 2233333333333 346777777766543 4556777777777777777764 3666777777777778
Q ss_pred cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh--------------------
Q 016814 282 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD-------------------- 341 (382)
Q Consensus 282 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~-------------------- 341 (382)
.+..+|.+.+.+++.++..-.++.+...+-..+...+.+..+. +..++.++..|+.+..
T Consensus 1289 RNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~-~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1289 RNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESL-KSISCATISNIANYSQEMLKNYASAILPLIFLAMHE 1367 (1702)
T ss_pred ccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCc-cchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhH
Confidence 7777888888888887776666544333333333344333321 1222222222222110
Q ss_pred ----------------------H-H-HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 342 ----------------------Q-S-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 342 ----------------------~-~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
. + .....+.+......++..|.+|..+++++..++.-+.
T Consensus 1368 e~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1368 EEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccccc
Confidence 0 0 1224455556666788889999999999998876543
No 35
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.62 E-value=7.6e-12 Score=109.57 Aligned_cols=375 Identities=15% Similarity=0.110 Sum_probs=262.2
Q ss_pred hccCCchHHHHHHHHHHHHHHhccCh-------------------hhhhhhhhhhhhhhc-------cCCCHHHHHHHHH
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEP-------------------QDCVAHILPVIVNFS-------QDKSWRVRYMVAN 58 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~ll~~l~~~~-------~d~~~~vR~~a~~ 58 (382)
..+..+++|...|++....+...--. ......++|-+.+++ .+.+|.+-.++..
T Consensus 271 ~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~s 350 (858)
T COG5215 271 FMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASS 350 (858)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHH
Confidence 45678889999999999777753211 011234666666655 2458999999999
Q ss_pred HHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHH
Q 016814 59 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALA 135 (382)
Q Consensus 59 ~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~ 135 (382)
+|.-.++..|+....+ ++.++.+-+.+++|.-|+++..++|.+...-... .+.+..+|.+.....|+.-.|++.++
T Consensus 351 CLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA 429 (858)
T COG5215 351 CLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA 429 (858)
T ss_pred HHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence 9999898887766543 8888889999999999999999999986543332 45677889999999999999999999
Q ss_pred HHHHhhccccChHhHH-HhhHHHHHH---hhcCCChHHHHHHHHhhHHhhhhhchhh-----H----hhhHHHHHHHH--
Q 016814 136 SVIMGMAPLLGKDATI-EQLLPIFLS---LLKDEFPDVRLNIISKLDQVNQVIGIDL-----L----SQSLLPAIVEL-- 200 (382)
Q Consensus 136 ~~l~~l~~~~~~~~~~-~~l~~~l~~---~l~d~~~~vr~~~~~~l~~~~~~~~~~~-----~----~~~llp~l~~~-- 200 (382)
++++.++.++...... .++.+.... .+.| +|.+-.++.+.+..+...+.+-. + ...++..+...
T Consensus 430 wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~ 508 (858)
T COG5215 430 WCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTE 508 (858)
T ss_pred HHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 9999998766532211 223333332 3455 66777777777666665544321 1 12233333222
Q ss_pred hcCCCchHHHHHHHHhHHHHhhhchhhh------H-------HHHHHHHHHHhc--c--chhHHHHHHHHHHHHHHHHhC
Q 016814 201 AEDRHWRVRLAIIEYIPLLASQLGVGFF------D-------DKLGALCMQWLQ--D--KVYSIRDAAANNLKRLAEEFG 263 (382)
Q Consensus 201 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~------~-------~~l~~~l~~~l~--d--~~~~vr~~a~~~l~~~~~~~~ 263 (382)
..+.....|.++...++.+....+.... . ++-+....+.+. | ...++...-+..+..++...+
T Consensus 509 ~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~ 588 (858)
T COG5215 509 LALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR 588 (858)
T ss_pred hhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1355567889999999988765443211 1 111222222222 2 135677778888888888887
Q ss_pred h--HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 264 P--EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 264 ~--~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
. +...++++..++..+...+ ..+-.-...+++.++..++.. .+.++++|++.+.++.....|-.+++..++.++.
T Consensus 589 ~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlan 668 (858)
T COG5215 589 RDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLAN 668 (858)
T ss_pred CCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 7 5566778888888887664 445556778888888777754 5788999999999988888899999999999999
Q ss_pred hhhHHH--HHHhHHHHHHHhcCC--CCccHHhHHHHHHHHHHHHhcc
Q 016814 339 IVDQSM--VEKTIRPCLVELTED--PDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 339 ~~~~~~--~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~~~~~~ 381 (382)
.++.+. +...++..|.++++. .+.+++-.....++.++..+|.
T Consensus 669 tl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga 715 (858)
T COG5215 669 TLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA 715 (858)
T ss_pred HhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence 998763 557777778787655 4667888889999999888774
No 36
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.2e-12 Score=125.91 Aligned_cols=338 Identities=17% Similarity=0.171 Sum_probs=243.1
Q ss_pred HHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHH
Q 016814 20 GCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAA 96 (382)
Q Consensus 20 ~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~d~~~~VR~~a~ 96 (382)
-+..+|..++. +.++--++++.+ +..|.-|+.|+-.++.+++..+. +.+...++|.+.++=.||+..|+.+..
T Consensus 944 ELc~LASdl~q----PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~ 1019 (1702)
T KOG0915|consen 944 ELCNLASDLGQ----PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMT 1019 (1702)
T ss_pred HHHHHHhhcCC----hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHH
Confidence 34455554443 456666777775 56899999999999999988776 455667999999999999999999998
Q ss_pred HHHHHHHHh--hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh---hcCCChHHHH
Q 016814 97 GKVTKFCRI--LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL---LKDEFPDVRL 171 (382)
Q Consensus 97 ~~l~~l~~~--~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~ 171 (382)
.....+... ...+.+.++|+.-+..-+.+..|.||+++|-++..+.+.-+.+...+.+..+...+ +.|-.+.||+
T Consensus 1020 sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~ 1099 (1702)
T KOG0915|consen 1020 SIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVRE 1099 (1702)
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887543 12335567788888888899999999999999999998766555555554444443 4565688888
Q ss_pred HHHHhhHHhhhhh---c-------hhhHhhhHHHHHHHH-hcCCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHH
Q 016814 172 NIISKLDQVNQVI---G-------IDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQ 238 (382)
Q Consensus 172 ~~~~~l~~~~~~~---~-------~~~~~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ 238 (382)
++-.+...+.+.. + ...+...++|.+..- .-++-..||+..+..+..++++.|... +.+.++|.+.+
T Consensus 1100 aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1100 AADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLN 1179 (1702)
T ss_pred HHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHH
Confidence 7655544443321 1 123336677777541 235667899999999999999888643 34677888777
Q ss_pred HhccchhHH-------------------HHHHH------HHHHHHHHHhChHHHHhhhHHHHHhhhcCcc-hHHHHHHHH
Q 016814 239 WLQDKVYSI-------------------RDAAA------NNLKRLAEEFGPEWAMQHITPQVLEMINNPH-YLYRMTILR 292 (382)
Q Consensus 239 ~l~d~~~~v-------------------r~~a~------~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~~a~~ 292 (382)
....-++.| |..++ +.++..+.+.. ....++++|.+.+..+.+- -..|-.++.
T Consensus 1180 ~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD-~~vLeelip~l~el~R~sVgl~Tkvg~A~ 1258 (1702)
T KOG0915|consen 1180 AYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID-ISVLEELIPRLTELVRGSVGLGTKVGCAS 1258 (1702)
T ss_pred HccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhccCCCCcchhHHH
Confidence 665443332 22221 12222222221 2345779999999887653 678889999
Q ss_pred HHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCc
Q 016814 293 AISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362 (382)
Q Consensus 293 ~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~ 362 (382)
++..++..+|.+ ++..+++-.++.+++|.++.+|...+.+.+.++..-.++.....+-..+..++.+.+.
T Consensus 1259 fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es 1330 (1702)
T KOG0915|consen 1259 FISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES 1330 (1702)
T ss_pred HHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC
Confidence 999999988876 7889999999999999999999999999999998888877766666666666655444
No 37
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.4e-14 Score=115.96 Aligned_cols=337 Identities=17% Similarity=0.153 Sum_probs=239.8
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhhhhh---hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc--ccccchH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLV 77 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~---ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll 77 (382)
+.++++.++.+...|.+.+|.++...+....... +-+++.+...|.. .+|..++.++.+++..-... .....-+
T Consensus 91 l~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 91 LALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhhhhhhhccccchhhhhhccch
Confidence 3467788889999999999988887665443333 3346777766664 78999999999999752211 1123345
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC-hH---hHH
Q 016814 78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-KD---ATI 151 (382)
Q Consensus 78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~---~~~ 151 (382)
..+.++.+.++..||..+..+|.++...-. ...+...-+|.+.++++..++.||.-++.+++.++-.-. .. ...
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqae 249 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAE 249 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcc
Confidence 566668888889999999999988754322 223334678999999999999999999999998874221 11 123
Q ss_pred HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc--hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh-
Q 016814 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF- 228 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~--~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~- 228 (382)
+.++|.+.+++.|+++.|+..+..+++.+...-. .+.....-+|.+.++++++.-..-.+-..++..++-+-+.+..
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce
Confidence 6799999999999999999999999988765322 1222234589999999888766556666666655543332221
Q ss_pred -HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc--ccc
Q 016814 229 -DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA--PVM 301 (382)
Q Consensus 229 -~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~--~~~ 301 (382)
...++..+..+|.- .+.+++-.|...+..++..... ..+....+|.+.+++.|....+|.....++..++ +..
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 23355556666654 4566999999999998864322 2345568999999999988766666555565554 444
Q ss_pred ChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814 302 GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 302 ~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 340 (382)
.......-++|.++..+.+.+.+||..++.+|..+.+..
T Consensus 410 k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 410 KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 444455678999999999999999999999999998754
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.59 E-value=9.4e-12 Score=114.33 Aligned_cols=366 Identities=17% Similarity=0.183 Sum_probs=247.7
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCC
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRD 86 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d 86 (382)
+...=..+.++|..+.....+....+...+.+...+.++++.||..+++.++.++..-.. -.....+++.+..++.|
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~ 130 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD 130 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC
Confidence 333335777888888888877777888999999999999999999999999887743322 11235689999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---HHHhhHHHHHHh
Q 016814 87 NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSL 161 (382)
Q Consensus 87 ~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~ 161 (382)
++..|.+.|+++|..+++.-..- .+.+..++.+..++..++..+|..+...+..++..-.... ....+++.+.+.
T Consensus 131 ~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~e 210 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKE 210 (503)
T ss_pred CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHH
Confidence 99999999999999998743221 1223347888888888788899889888888876543221 224588888888
Q ss_pred hcCCChHHHHHHHHhhHHhhhhh-chhhH-hhhHHHHHHHHhcCCC--c---hHH-HHHHHHhHHHHhhhchhhh---HH
Q 016814 162 LKDEFPDVRLNIISKLDQVNQVI-GIDLL-SQSLLPAIVELAEDRH--W---RVR-LAIIEYIPLLASQLGVGFF---DD 230 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~~~-~~~~~-~~~llp~l~~~~~d~~--~---~vr-~~~~~~l~~l~~~~~~~~~---~~ 230 (382)
+++++.-++.+++..+..++..- |.+.+ ...+++.+..++.+.. + .+. ...+..++.++.. ++..+ .+
T Consensus 211 L~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p 289 (503)
T PF10508_consen 211 LDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYP 289 (503)
T ss_pred hcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHH
Confidence 99989999999999999998731 11211 1346666766654322 2 111 2333555555543 33222 25
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH-H-------HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-A-------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~-------~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~ 302 (382)
.++..+...+.+.+...+..|+.++|.++....... . ...++..+.....+....+|..++.++..+.....
T Consensus 290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 290 AFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 677777788889999999999999999986543322 1 23355555566667777899999999999853322
Q ss_pred h---h--------hhh---hhhHH-HHHhhccCCCccHHHHHHHHHHHHhhhh-hHHHHH--HhHHHHHHHhcCCCCccH
Q 016814 303 S---E--------ITC---SRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIV-DQSMVE--KTIRPCLVELTEDPDVDV 364 (382)
Q Consensus 303 ~---~--------~~~---~~~l~-~l~~~l~d~~~~vR~~a~~~l~~i~~~~-~~~~~~--~~i~~~l~~l~~d~~~~v 364 (382)
. + +|. ..-.. .+...++.|-+++|.++...+..++.+- |...+. ..++..+..-..+++++.
T Consensus 370 ~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ 449 (503)
T PF10508_consen 370 DRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEG 449 (503)
T ss_pred CCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHH
Confidence 2 1 110 11112 6778888888999999999999998653 222211 234444433344556666
Q ss_pred HhHHHHHHHHHH
Q 016814 365 RFFATQAIQSID 376 (382)
Q Consensus 365 r~~a~~al~~~~ 376 (382)
+.+=...+..+.
T Consensus 450 ke~K~~ii~~l~ 461 (503)
T PF10508_consen 450 KEAKYDIIKALA 461 (503)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 39
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.54 E-value=3e-11 Score=111.05 Aligned_cols=338 Identities=17% Similarity=0.197 Sum_probs=236.4
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHh
Q 016814 38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQH 114 (382)
Q Consensus 38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ 114 (382)
.+.+..++++.+...-..+++.|..+............+.+.+...+.++++.||..+++.++.++..-... ...+.
T Consensus 40 ~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 40 EPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 344677777777666788888999888877666556778999999999999999999999998876543221 22357
Q ss_pred hhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-H-hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH---
Q 016814 115 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--- 189 (382)
Q Consensus 115 il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~--- 189 (382)
+++.+..++.|++..|...+++++..++..-.. + .+.+.+.+.+.+++..+++.+|..+...+..++.. +++.+
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 889999999999999999999999999865331 1 12244478888888887889999988888887643 22221
Q ss_pred -hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-chhhhH-HHHHHHHHHHhccchhHHHHH------HHHHHHHHHH
Q 016814 190 -SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFD-DKLGALCMQWLQDKVYSIRDA------AANNLKRLAE 260 (382)
Q Consensus 190 -~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~-~~l~~~l~~~l~d~~~~vr~~------a~~~l~~~~~ 260 (382)
...+++.+...+++++.-++.++++.+..++..- |-+++. ..+++.+...+.+....-|.. .++..+.++.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 1347888888889999999999999999998732 222222 235666666665432221222 2345555554
Q ss_pred HhChHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh--------hhhhhHHHHHhhccCCCccHHHHH
Q 016814 261 EFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--------TCSRLLPVVINASKDRVPNIKFNV 329 (382)
Q Consensus 261 ~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--------~~~~~l~~l~~~l~d~~~~vR~~a 329 (382)
. ++..+ ...++..+.+.+.+.+...+.+|+.+++.++....... ....++..+.........++|..+
T Consensus 279 ~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~ 357 (503)
T PF10508_consen 279 V-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRA 357 (503)
T ss_pred c-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3 33222 23455566677778889999999999999986543321 224456666666777777899999
Q ss_pred HHHHHHHhhhhhH---H--------HHH---HhHHH-HHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 330 AKVLQSLIPIVDQ---S--------MVE---KTIRP-CLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 330 ~~~l~~i~~~~~~---~--------~~~---~~i~~-~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
+.+++.+...... + +|. ..-.. .+..+++.|-+++|.++.+.+..++.
T Consensus 358 l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 358 LHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 9999999643322 1 111 11111 56677888999999999999988764
No 40
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=7.9e-11 Score=106.90 Aligned_cols=168 Identities=21% Similarity=0.244 Sum_probs=129.9
Q ss_pred chhccCCchHHHHHHHHHHHH-HHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAA-LGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 81 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~-l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 81 (382)
.+|++...+..+..|+.-|.. +++... .+.+.|.+.+....++.+||+.+--.|-+.++.-++.... -+..+.
T Consensus 41 ~~lLdSnkd~~KleAmKRIia~iA~G~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQ 114 (968)
T KOG1060|consen 41 KQLLDSNKDSLKLEAMKRIIALIAKGKD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQ 114 (968)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHHH
Confidence 456666666666666665554 444332 5778888889899999999999999999988865554433 288899
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814 82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 161 (382)
Q Consensus 82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 161 (382)
+.+.|+++.+|..|+..+..+= -..+...++-.+.++..|+++.||..|+.++..+-. ++++. .+++...+..+
T Consensus 115 k~L~DpN~LiRasALRvlSsIR----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~-k~qL~e~I~~L 188 (968)
T KOG1060|consen 115 KALKDPNQLIRASALRVLSSIR----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQ-KDQLEEVIKKL 188 (968)
T ss_pred hhhcCCcHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhh-HHHHHHHHHHH
Confidence 9999999999999999988751 222334566677889999999999999999998875 34433 34899999999
Q ss_pred hcCCChHHHHHHHHhhHHhhh
Q 016814 162 LKDEFPDVRLNIISKLDQVNQ 182 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~ 182 (382)
+.|.++-|-..++.++..++.
T Consensus 189 LaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 189 LADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred hcCCCCcchhHHHHHHHHhch
Confidence 999999999999888887764
No 41
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.47 E-value=3.5e-11 Score=106.01 Aligned_cols=253 Identities=22% Similarity=0.251 Sum_probs=161.7
Q ss_pred hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 016814 36 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 115 (382)
Q Consensus 36 ~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i 115 (382)
...+.+.+.+.|+++.+|..+...++.+.. ...+|.+.+.+.|.++.||..+..+|+.+.. ...
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 345556667777788888888877665542 4567778888888888888888887766532 133
Q ss_pred hHhhhhhcC-CCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC------------hHHHHHHHHhhHHhhh
Q 016814 116 LPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ 182 (382)
Q Consensus 116 l~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~~~~~l~~~~~ 182 (382)
+|.+.++++ |.++.||..++.+++.+...-. ++.+.+.++|+. ..+|..++..++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDERA--------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 455555555 7888888888888888776322 222222333322 2577777777776643
Q ss_pred hhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814 183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 262 (382)
Q Consensus 183 ~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 262 (382)
+...+.+...+.+....||..++..++.+.... ..+.+.+...+.|+++.+|..++..++....
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 455666777777777788888888887776432 2456667777888888888888887766542
Q ss_pred ChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814 263 GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 263 ~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
....+.+...+.+.++.++..+....... ....-.+.+...+.|....+|..+..+++.+......
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 308 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGAL--------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAV 308 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhccc--------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccchH
Confidence 22445556666677776666666555411 1122233445566677777777777777777765543
No 42
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.47 E-value=4.9e-11 Score=105.08 Aligned_cols=248 Identities=23% Similarity=0.273 Sum_probs=167.7
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 154 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 154 (382)
...+.+.+.+.|+++.+|..+...++.+.. ...+|.+.+++.|.++.||..++.+++.+.. +.-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 356777778888888888888888666543 3567888888888888999999887777752 234
Q ss_pred HHHHHHhhc-CCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCC------------chHHHHHHHHhHHHHh
Q 016814 155 LPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH------------WRVRLAIIEYIPLLAS 221 (382)
Q Consensus 155 ~~~l~~~l~-d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~------------~~vr~~~~~~l~~l~~ 221 (382)
.|.+.+++. |++..||..++.+++.+... ..++.+...++++. |.+|..+...++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 455555555 78889999999998888753 22333334444433 4677788777776643
Q ss_pred hhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814 222 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 301 (382)
Q Consensus 222 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 301 (382)
+...+.+...+.|++..||..|+.+++.+.... ..+.+.+...+.++++.+|..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 345666777888888889999988888877542 2356677778888889999888888877652
Q ss_pred ChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 302 GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 302 ~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
....+.+...+.+....++..+...++.+.. ....+.+.....|..+.+|..+..+++.+.
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGALDL--------AEAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhcccCc--------hhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 2344556677777777777777666652211 122233444455556666666665555543
No 43
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.46 E-value=1.9e-11 Score=100.72 Aligned_cols=340 Identities=13% Similarity=0.110 Sum_probs=227.2
Q ss_pred hhhhhhhhhhc-cCCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh---hC
Q 016814 35 AHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI---LN 107 (382)
Q Consensus 35 ~~ll~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~---~~ 107 (382)
..+.|.+.+++ +.+..-..-.|+=+|.+++....... .....+|.|++++.+++..||+.+.++|++++.. +.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 34677777777 34444566778888898886554422 1235799999999999999999999999998643 22
Q ss_pred HHHHHHhhhHhhhhhcCCCch--HHHHHHHHHHHhhccccCh---HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 016814 108 PELAIQHILPCVKELSSDSSQ--HVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182 (382)
Q Consensus 108 ~~~~~~~il~~l~~~~~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~ 182 (382)
........+..+..++.+... .+-+.+.+.|..++..-.+ .....+.+|.+.+++...+++|-..+++++.-+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 222233455666666655544 4556777888888864432 23457899999999999999999999999988765
Q ss_pred hhchhhH----hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch--h-hhHHHHHHHHHHHhccchhHHHHHHHHHH
Q 016814 183 VIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--G-FFDDKLGALCMQWLQDKVYSIRDAAANNL 255 (382)
Q Consensus 183 ~~~~~~~----~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 255 (382)
.-. +.. ...+.+.+.+++.+++..+..-+++..+.+...-+. . ...-..++.+..+|.++...+|+.|+..+
T Consensus 273 g~~-E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 273 GPN-EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred CcH-HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 322 111 123456788999999998888888888887643221 1 11234567777889999999999999999
Q ss_pred HHHHHHhChH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC-hhhhh-----hhhHHHHHhhccCCCccHH
Q 016814 256 KRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITC-----SRLLPVVINASKDRVPNIK 326 (382)
Q Consensus 256 ~~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~-----~~~l~~l~~~l~d~~~~vR 326 (382)
+.+...-..+ .....++|.++.++....+.+|..|+++++......- ..... +-++..+..+|.-..-.+-
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkii 431 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKII 431 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccch
Confidence 9886421111 1345689999999999999999999999999764432 21222 2334445555543323355
Q ss_pred HHHHHHHHHHhhhhhH---------HH----HH-HhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814 327 FNVAKVLQSLIPIVDQ---------SM----VE-KTIRPCLVELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 327 ~~a~~~l~~i~~~~~~---------~~----~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 375 (382)
..++.++..+...-.. .. .. ...+..+..+.+..+..+-..|+..+..+
T Consensus 432 ev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~f 494 (526)
T COG5064 432 EVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKF 494 (526)
T ss_pred hhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 5556666666542111 01 11 34556666677777777777666655543
No 44
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.46 E-value=1e-11 Score=103.02 Aligned_cols=188 Identities=18% Similarity=0.244 Sum_probs=132.9
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch----hhhHH---HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 263 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 263 (382)
+.+.+.+..--.+.+|..|..++..+..++..-.+ ..+.+ .+.+.+...+.|....|-..|+..+..++..+|
T Consensus 6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 6 EEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34445554445788999999999999988765511 12222 333566677888888999999999999999988
Q ss_pred hH--HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhh-HHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814 264 PE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 264 ~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~-l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 340 (382)
.. .+.+.++|.+++.+.+++..+|+.|..++..+.+.++ +...+ ++.+....+++++.+|..++..+..+....
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 74 3677899999999999999999999999999998877 22344 778888999999999999999999998888
Q ss_pred h--HH-----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 341 D--QS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 341 ~--~~-----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
+ .. .....+.+.+.++++|++++||..|.+++..+....|.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 7 11 22367899999999999999999999999999888764
No 45
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.3e-11 Score=102.48 Aligned_cols=342 Identities=16% Similarity=0.156 Sum_probs=245.0
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc---chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--
Q 016814 35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-- 109 (382)
Q Consensus 35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~---~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-- 109 (382)
.+....++-+++..+..+..++...+|+++-..+.....- .+-+.+.+++.| ..+||..+..++.+++..-...
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhh
Confidence 3344445567788889999999999999987776643322 234455666554 6778888888888887652222
Q ss_pred HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH--hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc-h
Q 016814 110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-I 186 (382)
Q Consensus 110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~-~ 186 (382)
.....-+..+..+.+.++..||..+..++-.+...-... .....-+|++.++++..+..||.-+..+++.++-.-. .
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 122234555666889999999999999998887644322 2235667999999999999999999999887642211 1
Q ss_pred hh---HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh--chhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 016814 187 DL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 261 (382)
Q Consensus 187 ~~---~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 261 (382)
.. ..+.++|.+..+..|.+.+++..+...+..++..- ..+.....-+|.+.++++++.-..-.+...++..+.-.
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 11 11468999999999999999999999999887532 23334445688999999998888777777888776654
Q ss_pred hChHH--HHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814 262 FGPEW--AMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQS 335 (382)
Q Consensus 262 ~~~~~--~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 335 (382)
-+.+. ....++..+..++.-. +..++..|...+..++-....+ .+..-.+|.+..++-|..-.+|...-.++..
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 44432 1223455566666543 4678899999999987543322 2345678889999999988888887777777
Q ss_pred Hhhh--hhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 336 LIPI--VDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 336 i~~~--~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
++-. .........+.|.|..++.|.+.+||-+|+.|+..+.+
T Consensus 403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 6543 22334557899999999999999999999999988764
No 46
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.44 E-value=3.7e-12 Score=114.64 Aligned_cols=253 Identities=19% Similarity=0.230 Sum_probs=206.7
Q ss_pred CCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcC
Q 016814 124 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 203 (382)
Q Consensus 124 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d 203 (382)
.-.+..-|....+.|......++.+.....++|.+...+.-.+ --..++.-+-.+...+....+...++|.+.++++.
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~ 341 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS 341 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence 3345555666666666666666666666777777776654322 11112222333444455555778899999999999
Q ss_pred CCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcc
Q 016814 204 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH 283 (382)
Q Consensus 204 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 283 (382)
++-.+|..+++.+..+...+.++.+.++++|.+...+.|.++.+|+.+++++..++..++.......++..+...-.|.+
T Consensus 342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~ 421 (690)
T KOG1243|consen 342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH 421 (690)
T ss_pred cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999988777788888888888889
Q ss_pred hHHHHHHHHHHHHhccccChhhhhhhhH-HHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCc
Q 016814 284 YLYRMTILRAISLLAPVMGSEITCSRLL-PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362 (382)
Q Consensus 284 ~~~r~~a~~~l~~l~~~~~~~~~~~~~l-~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~ 362 (382)
..+|....-|++.+++.+.+.. ...++ -.+...++|+-..-|.++...+....+.+.......+|+|.+..+.-|++.
T Consensus 422 ~~irtntticlgki~~~l~~~~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~ 500 (690)
T KOG1243|consen 422 GGIRTNTTICLGKIAPHLAASV-RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK 500 (690)
T ss_pred Ccccccceeeecccccccchhh-hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence 9999999999999998887764 44444 456678999999999999999999999999989999999999999999999
Q ss_pred cHHhHHHHHHHHHHHHh
Q 016814 363 DVRFFATQAIQSIDHVM 379 (382)
Q Consensus 363 ~vr~~a~~al~~~~~~~ 379 (382)
.||..|.+++..+-..+
T Consensus 501 ~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 501 TVRDTAEKAIRQFLEKL 517 (690)
T ss_pred chhhHHHHHHHHHHhhh
Confidence 99999999998876554
No 47
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.43 E-value=5.5e-12 Score=103.75 Aligned_cols=339 Identities=15% Similarity=0.098 Sum_probs=225.9
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCHH---H
Q 016814 39 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPE---L 110 (382)
Q Consensus 39 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~---~ 110 (382)
|-+.+.+...|-+....++-.+..+...-.... ....++|.|++++.+. ..-..-.|+++|.+++..-+.. .
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 544444444555555555555555443222221 1235899999999543 4446778999999987754432 2
Q ss_pred HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC--hHhH-HHhhHHHHHHhhcCCC--hHHHHHHHHhhHHhhhhhc
Q 016814 111 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDAT-IEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIG 185 (382)
Q Consensus 111 ~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~-~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~~~~~~~ 185 (382)
+-...+|.+..++.+++..||+.++++|+.++.-.. ++.. ....+..+..++.+.. -..-+++-+.+..++..-.
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 223578999999999999999999999999985332 1111 1223333334433322 3555567777777776543
Q ss_pred hh-h--HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814 186 ID-L--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 259 (382)
Q Consensus 186 ~~-~--~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 259 (382)
+. . .....+|.+.+++-..++.+-..++..++.++..-.+. .+.-.+.+.+..+|.+++..|..-|+.++|.++
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 31 2 23567999999999999999999999999987532211 112234566888999999999999999999988
Q ss_pred HHhChH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHH
Q 016814 260 EEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVL 333 (382)
Q Consensus 260 ~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l 333 (382)
..-..+ ...-..++.+..++.++...+|..+++.++.+.-.-... .....++|.++..+......+|..|+.++
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 533221 122346777888899999999999999999875332221 34467899999999998899999999999
Q ss_pred HHHhhhhh--HHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 334 QSLIPIVD--QSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 334 ~~i~~~~~--~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
......-. ++. ..+.++..|..++.-.+..+-..+..++..+..
T Consensus 394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 88765422 221 234555666666665666666666677666543
No 48
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.41 E-value=8.8e-11 Score=103.74 Aligned_cols=241 Identities=15% Similarity=0.032 Sum_probs=174.1
Q ss_pred hHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814 76 LVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 154 (382)
Q Consensus 76 ll~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 154 (382)
.++.+...+ .|+++.++..++.++..... ...+..+...+.|.++.||..++++|+.+.. +..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHH
Confidence 477777777 57778888877766653311 1236778888899999999999999987752 466
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHH
Q 016814 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 234 (382)
Q Consensus 155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 234 (382)
.+.+..+++++++.||..++.+++... .+ -.+.+..+++|+++.||..++..++.+.. ....|
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~----~~-----~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~ 181 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHR----HD-----PGPALEAALTHEDALVRAAALRALGELPR--------RLSES 181 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc----cC-----hHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence 678888889999999998887766632 11 23456666789999999999999998753 23455
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHH
Q 016814 235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 314 (382)
Q Consensus 235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l 314 (382)
.+...+.|.++.||..|+..++.+. .+ ...+.+.....++....+..+...+... +. ...++.+
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG----~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L 245 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAG----SR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL 245 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcC----CH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence 5667799999999999999986653 22 2344555555666655555555555433 22 2677788
Q ss_pred HhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 315 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 315 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
...++|+. +|..++.+++.+.. ...++.|...+.|+. ++..|.+++..|..
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 88888854 99999999998864 456777777777654 89999999988764
No 49
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=4.3e-10 Score=102.23 Aligned_cols=285 Identities=16% Similarity=0.128 Sum_probs=182.2
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 81 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 81 (382)
+|+-++|+++.+|..|++++..+--. .+.+.++-.+.++..|.++.||+.|+.++.++-. ++++.. .+++..+.
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k-~qL~e~I~ 186 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQK-DQLEEVIK 186 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhH-HHHHHHHH
Confidence 57789999999999999999876432 2345666778889999999999999999998764 444443 47999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc-C--------------
Q 016814 82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-G-------------- 146 (382)
Q Consensus 82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~-------------- 146 (382)
.++.|.++-|--+|+.++..++..- -..++.-...+..++.|-+.+=+..++..|...+.+- .
T Consensus 187 ~LLaD~splVvgsAv~AF~evCPer--ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~ 264 (968)
T KOG1060|consen 187 KLLADRSPLVVGSAVMAFEEVCPER--LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGR 264 (968)
T ss_pred HHhcCCCCcchhHHHHHHHHhchhH--HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcc
Confidence 9999999999999888888765421 0122233344555556655555555555555443210 0
Q ss_pred -------------h---HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHH
Q 016814 147 -------------K---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 210 (382)
Q Consensus 147 -------------~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~ 210 (382)
+ +.-...++.-...++...++.|-.++++.+..++... .. ..+...+..++.. +..++.
T Consensus 265 ~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~---~~-~~i~kaLvrLLrs-~~~vqy 339 (968)
T KOG1060|consen 265 SCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN---QV-TKIAKALVRLLRS-NREVQY 339 (968)
T ss_pred cccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH---HH-HHHHHHHHHHHhc-CCcchh
Confidence 0 0011334455555666777778777777776665432 22 3444455554433 345666
Q ss_pred HHHHHhHHHHhhhch-------h-------------------------hhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 016814 211 AIIEYIPLLASQLGV-------G-------------------------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 258 (382)
Q Consensus 211 ~~~~~l~~l~~~~~~-------~-------------------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 258 (382)
..+..+..++..... . .-...+++-+..+.++.+.++-..+++++|..
T Consensus 340 vvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrC 419 (968)
T KOG1060|consen 340 VVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRC 419 (968)
T ss_pred hhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 666666665432211 0 00134666677777877778888888999998
Q ss_pred HHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814 259 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 301 (382)
Q Consensus 259 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 301 (382)
+...+. +.+..+..+..++++.+..+-..++..+..+.+.-
T Consensus 420 A~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 420 ASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred HHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 887653 23456666666666666666666666666665443
No 50
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.36 E-value=2.3e-10 Score=101.14 Aligned_cols=208 Identities=15% Similarity=0.096 Sum_probs=119.2
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhH
Q 016814 38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 117 (382)
Q Consensus 38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~ 117 (382)
+..+.+.+.|.++.||..+++.|+.+. .....+.+..++.++++.||.+++.+++.... .-.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~ 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGP 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHH
Confidence 455556666666667777777766433 13455666666677777777666655554211 1124
Q ss_pred hhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHH
Q 016814 118 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 197 (382)
Q Consensus 118 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l 197 (382)
.+..+++|+++.||..++.+++.+.. ....|.+...+.|.++.||..++.++..+.. ....+.+
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l 214 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVC 214 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHH
Confidence 55556667777777777777776653 2334445566677777777777766655432 1122333
Q ss_pred HHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHh
Q 016814 198 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 277 (382)
Q Consensus 198 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~ 277 (382)
..+..++.+.++..+...+... |. +..++.+..+++|+. +|..++.+++.+.. ...++.+++
T Consensus 215 ~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~ 276 (410)
T TIGR02270 215 RRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLRELLQAAA--TRREALRAVGLVGD--------VEAAPWCLE 276 (410)
T ss_pred HHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHH
Confidence 3333444444444444433332 21 245556666677654 77777777776542 336667777
Q ss_pred hhcCcchHHHHHHHHHHHHhc
Q 016814 278 MINNPHYLYRMTILRAISLLA 298 (382)
Q Consensus 278 ~l~~~~~~~r~~a~~~l~~l~ 298 (382)
.+.|+. +|..|.+++..+.
T Consensus 277 ~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 277 AMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HhcCcH--HHHHHHHHHHHhh
Confidence 776554 6677777777654
No 51
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.7e-09 Score=96.65 Aligned_cols=250 Identities=15% Similarity=0.155 Sum_probs=149.4
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC--h------
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--K------ 147 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~------ 147 (382)
+..-+..+.+|.++.||..|++++..+.+.+.-. ..+.....+++.|.+..||.+|++.+..+++..+ .
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccccccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 4444666667777777777777777766622221 2344555666777777777777777666665552 1
Q ss_pred HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH-------
Q 016814 148 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA------- 220 (382)
Q Consensus 148 ~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~------- 220 (382)
....+..+.-++..++|-+..||..+++.+|.+-.. +.+.+.+.+-.-+.. .+.-|+......+.+..-.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-See~i~QTLdKKlms--~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV-SEEIIQQTLDKKLMS--RLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh-HHHHHHHHHHHHHhh--hhhhhhhcccchHHHHhcCCcccCcc
Confidence 112355566666677777777777777777766432 221111111111111 1111211111111111100
Q ss_pred --hhhchhh--------hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHH
Q 016814 221 --SQLGVGF--------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI 290 (382)
Q Consensus 221 --~~~~~~~--------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a 290 (382)
...+.+. ....-...+...+.|+-.+||.+|+.++..++..- ..|...-+..+..+++|....+|.-|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccHHHHHHHHH
Confidence 0000111 01112355677788888999999999999988532 23455677888899999989999999
Q ss_pred HHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814 291 LRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 336 (382)
Q Consensus 291 ~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i 336 (382)
+.++..++..+. ..+..++.++..+.|.++++|.+.-+.|+..
T Consensus 431 i~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 431 IFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998887633 4567788888999999999998877777654
No 52
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=2.9e-10 Score=101.42 Aligned_cols=312 Identities=18% Similarity=0.140 Sum_probs=207.0
Q ss_pred hHHHHHHHHHHHHHHhccCh-hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814 11 DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 89 (382)
Q Consensus 11 ~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~ 89 (382)
..+|..+......++..-++ ......+..-+..+..|.+.+||..|++++-.+.+.+.- .+.......+.+.|.+.
T Consensus 172 ~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL---~~~~Y~~A~~~lsD~~e 248 (823)
T KOG2259|consen 172 TGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL---SKACYSRAVKHLSDDYE 248 (823)
T ss_pred ccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc---cHHHHHHHHHHhcchHH
Confidence 34455555555555443222 122334455467788999999999999999988873321 23467777889999999
Q ss_pred HHHHHHHHHHHHHHHhhC--H------HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHH-H
Q 016814 90 EVRIAAAGKVTKFCRILN--P------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL-S 160 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~--~------~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~-~ 160 (382)
.||.+|++.+.-++..++ . .......+..+...+.|-++.||-.+++++|.+-+... +. +..-+. +
T Consensus 249 ~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~----i~QTLdKK 323 (823)
T KOG2259|consen 249 DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EI----IQQTLDKK 323 (823)
T ss_pred HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HH----HHHHHHHH
Confidence 999999999988887762 1 13445677888889999999999999999999865322 11 111111 1
Q ss_pred hhcCCChHHHHHHHHhhH-Hhhhh--------hch----hh---HhhhHHH-----HHHHHhcCCCchHHHHHHHHhHHH
Q 016814 161 LLKDEFPDVRLNIISKLD-QVNQV--------IGI----DL---LSQSLLP-----AIVELAEDRHWRVRLAIIEYIPLL 219 (382)
Q Consensus 161 ~l~d~~~~vr~~~~~~l~-~~~~~--------~~~----~~---~~~~llp-----~l~~~~~d~~~~vr~~~~~~l~~l 219 (382)
++++ .-|...+.-=+ .+... ++. +. -...++| .+..-+.|+..+||.++...+..+
T Consensus 324 lms~---lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~L 400 (823)
T KOG2259|consen 324 LMSR---LRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSL 400 (823)
T ss_pred Hhhh---hhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHH
Confidence 2221 11111111111 11100 111 11 1123444 345556888999999999999999
Q ss_pred HhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc
Q 016814 220 ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 299 (382)
Q Consensus 220 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 299 (382)
+..-+ .|...-+..+..+++|+...||..|+.++..++.... ..+..++.+.+.+.|.+..+|++.-..++. ++
T Consensus 401 a~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~-~~ 474 (823)
T KOG2259|consen 401 ATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN-AR 474 (823)
T ss_pred HcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC
Confidence 86432 2345678889999999999999999999999998743 356788999999999999999998888866 33
Q ss_pred ccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814 300 VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 300 ~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 341 (382)
.-..+ .....+..++..++- -|.=|.....+++.|+++.+
T Consensus 475 ~~d~~-~i~m~v~~lL~~L~k-yPqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 475 VSDLE-CIDMCVAHLLKNLGK-YPQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred CCcHH-HHHHHHHHHHHHhhh-CCCCcHHHHHHHHHHhccCh
Confidence 33333 455556666666543 35556777778888876654
No 53
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.32 E-value=4e-11 Score=108.08 Aligned_cols=253 Identities=15% Similarity=0.197 Sum_probs=198.2
Q ss_pred CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc
Q 016814 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE 88 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~ 88 (382)
++...|..-.+.+....+.++.+.....++|.+...+.-.+ .-...+..+-.+...+..+.+...++|.+.+++..++
T Consensus 266 ks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPD 343 (690)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcc
Confidence 45666777777777777778777777788888777664333 1223334444555666666677789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChH
Q 016814 89 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD 168 (382)
Q Consensus 89 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 168 (382)
..+|..-++.+..++..++++...+.++|.+...+.|.++.+|...++++..++..++.......++..+..+-.|++..
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~ 423 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGG 423 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCc
Confidence 99999999999999999999888888999999999999999999999999999988887766678888888888888899
Q ss_pred HHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHH
Q 016814 169 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248 (382)
Q Consensus 169 vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 248 (382)
.|.+..-+++++...+.+......+.-.+...++|+...-|.+....+....+.+.......+++|.+..+..|++..||
T Consensus 424 irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr 503 (690)
T KOG1243|consen 424 IRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVR 503 (690)
T ss_pred ccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchh
Confidence 99998888888887765544423334445556788888888888888887777777777777888988888899999999
Q ss_pred HHHHHHHHHHHHHhC
Q 016814 249 DAAANNLKRLAEEFG 263 (382)
Q Consensus 249 ~~a~~~l~~~~~~~~ 263 (382)
..|.+++..+.....
T Consensus 504 ~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 504 DTAEKAIRQFLEKLE 518 (690)
T ss_pred hHHHHHHHHHHhhhh
Confidence 999888888876553
No 54
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.30 E-value=4.1e-10 Score=106.27 Aligned_cols=187 Identities=20% Similarity=0.270 Sum_probs=157.9
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH-
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW- 266 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~- 266 (382)
..+-|.+..-+.+++|..|..+++.+....+.-+ ...+...+...+-..+.|.+..|-..++..+..++..++..+
T Consensus 252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 252 SKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 4566777777889999999999999988877655 122334455556667889999999999999999999988743
Q ss_pred -HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH---
Q 016814 267 -AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--- 342 (382)
Q Consensus 267 -~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~--- 342 (382)
+...++|.++..+++....+|+++..++-.++..++. ..+.+.+..++++.++.+|..+...+......+++
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 6678999999999999999999999999998875443 46778888999999999999999999999888873
Q ss_pred -HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 343 -SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 343 -~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
......+.|.+.+..+|.+.+||.+|..+++.+..++|.
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 345688999999999999999999999999999999985
No 55
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.30 E-value=2.8e-10 Score=94.47 Aligned_cols=188 Identities=21% Similarity=0.253 Sum_probs=129.9
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HH---HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~---~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 147 (382)
.+.+.|...-.+.+|..|..++..|..++....+. .+ ...+++.+...+.|....|-..++.++..++..++.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34444544446778888888888888887765111 11 223445666777888888999999999999988876
Q ss_pred Hh--HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc-hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814 148 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 224 (382)
Q Consensus 148 ~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~-~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 224 (382)
.. ..+.++|.+.+.+.|+...+|..+..++..++...+ .. ..+.+.+....+++++.+|..++..+..+....+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 53 347888999999999999999999999999998876 22 2237888888899999999999999999988877
Q ss_pred --hhh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH
Q 016814 225 --VGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 265 (382)
Q Consensus 225 --~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 265 (382)
... ..+.+.+.+...+.|++++||+.|-.++..+.+.+|..
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 121 23578999999999999999999999999999888763
No 56
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.29 E-value=1.1e-09 Score=96.36 Aligned_cols=291 Identities=12% Similarity=0.079 Sum_probs=197.2
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814 74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 153 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 153 (382)
.++.|++-..++|.-..|...+++++..++...-..+..+..+..+..+++.+....|=+|.+.+..++...+.. ...
T Consensus 263 ~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v~v 340 (898)
T COG5240 263 LQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--VSV 340 (898)
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--eee
Confidence 457788888888877888888888888877654333345667788889999999999999999999988654422 112
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 233 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 233 (382)
.-+-+..+++|++..+-.-+ +..+.+.-..+.+ +.++..+..+..|-+..-+.-++..+..++-.++.+. ..++
T Consensus 341 cN~evEsLIsd~Nr~IstyA---ITtLLKTGt~e~i-drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l 414 (898)
T COG5240 341 CNKEVESLISDENRTISTYA---ITTLLKTGTEETI-DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYL 414 (898)
T ss_pred cChhHHHHhhcccccchHHH---HHHHHHcCchhhH-HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHH
Confidence 23556677777775554444 4444444333333 6666666666666555555666666666666555442 2455
Q ss_pred HHHHHHhc-cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHH
Q 016814 234 ALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP 312 (382)
Q Consensus 234 ~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~ 312 (382)
..+...|. ....+.+..++.++....+..+. ..+..+..+.+++.|..+. +-++..++.+++..+...--...+-
T Consensus 415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~--skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvr 490 (898)
T COG5240 415 DFLGSSLLQEGGLEFKKYMVDAISDAMENDPD--SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVR 490 (898)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHH
Confidence 56655444 45678899999999999987643 2466777888888887653 3466667777654432211122223
Q ss_pred HHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 313 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 313 ~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
.+.+.+-=+|..||.+|+.+|..++-........+.+...|..+++|.|.+||..|.-++..+-
T Consensus 491 hIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 491 HIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 3333333356889999999999998777665566788888999999999999999998887654
No 57
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.1e-09 Score=98.13 Aligned_cols=349 Identities=14% Similarity=0.125 Sum_probs=205.8
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 85 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~ 85 (382)
+.|++|.+|..|++..+.+- -+.+...+..-+.++.+|.++.+|..++-+...+-..-++-.....+++.+..++.
T Consensus 95 ~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~ 170 (734)
T KOG1061|consen 95 CEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS 170 (734)
T ss_pred CCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc
Confidence 67899999999998876653 34566777777888999999999999999988766433333334568999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh-HHHhhHHHHHHh
Q 016814 86 DNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA-TIEQLLPIFLSL 161 (382)
Q Consensus 86 d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~ 161 (382)
|+++.|-..|+.++..+.+.-... .....++..+.+.++..+.+-+.....++.... +++. -...+...+...
T Consensus 171 D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~---p~d~~ea~~i~~r~~p~ 247 (734)
T KOG1061|consen 171 DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV---PKDSREAEDICERLTPR 247 (734)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC---CCCchhHHHHHHHhhhh
Confidence 999999999999999987755321 222234444444555555554555544444333 3222 224566666666
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh------------
Q 016814 162 LKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF------------ 227 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~------------ 227 (382)
+...++.|-..+.+.+......... +.+...+-|.+..++..+. .+...+++.+..+....+.-.
T Consensus 248 Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kyn 326 (734)
T KOG1061|consen 248 LQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYN 326 (734)
T ss_pred hccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecC
Confidence 6666777766666666665554443 1222444444444444433 555555555555443332100
Q ss_pred --------------------hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-------
Q 016814 228 --------------------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------- 280 (382)
Q Consensus 228 --------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~------- 280 (382)
..++++.-+.....+-+.+.-..+++++|.++...... +..++.++++++
T Consensus 327 DPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvv 403 (734)
T KOG1061|consen 327 DPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVV 403 (734)
T ss_pred CchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhccccee
Confidence 01223333334444555556666677777776544332 223333333322
Q ss_pred ------------------------------C-cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHH
Q 016814 281 ------------------------------N-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNV 329 (382)
Q Consensus 281 ------------------------------~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a 329 (382)
+ .++..|.+.++.++..++.+... .+++..++....|+...|+..-
T Consensus 404 qE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~~~Vql~L 480 (734)
T KOG1061|consen 404 QEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDETAEVQLEL 480 (734)
T ss_pred eehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccchHHHHHHH
Confidence 1 23556777777777777666643 4677777777888777777776
Q ss_pred HHHHHHHhhhhhHHHHHHhHHHHHHHhcCC-CCccHHhHHH
Q 016814 330 AKVLQSLIPIVDQSMVEKTIRPCLVELTED-PDVDVRFFAT 369 (382)
Q Consensus 330 ~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~ 369 (382)
+.+.-.+.-..+. .....+...|.....| .++++|-.+.
T Consensus 481 Lta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~~~~dlrDr~l 520 (734)
T KOG1061|consen 481 LTAAIKLFLKKPT-ETQELLQGVLPLATADTDNPDLRDRGL 520 (734)
T ss_pred HHHHHHHHhcCCc-cHHHHHHHHHhhhhccccChhhhhhHH
Confidence 6666555443332 2223333333334444 4557887654
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.6e-08 Score=92.65 Aligned_cols=347 Identities=16% Similarity=0.177 Sum_probs=212.5
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 89 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~ 89 (382)
+..|--.|+-+++.+ .++ +....+.|-+.++++..++.+|+-|+.+...+....++- .+.+++.+.+++.|.+.
T Consensus 120 nq~vVglAL~alg~i---~s~-EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~e~f~~~~~~lL~ek~h 193 (866)
T KOG1062|consen 120 NQYVVGLALCALGNI---CSP-EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--VEHFVIAFRKLLCEKHH 193 (866)
T ss_pred CeeehHHHHHHhhcc---CCH-HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--HHHhhHHHHHHHhhcCC
Confidence 333334444444444 333 456779999999999999999999999999988766553 24578888889999998
Q ss_pred HHHHHHHHHHHHHHHhhCHH-----HHHHhhhHhhhhhc-----------CCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814 90 EVRIAAAGKVTKFCRILNPE-----LAIQHILPCVKELS-----------SDSSQHVRSALASVIMGMAPLLGKDATIEQ 153 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~~~-----~~~~~il~~l~~~~-----------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 153 (382)
.|-.+++..+..+++.-+.. .....++..+..+. .=++|..+...++.|..+.+.-.+ ..+.
T Consensus 194 GVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d--aSd~ 271 (866)
T KOG1062|consen 194 GVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD--ASDL 271 (866)
T ss_pred ceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc--HHHH
Confidence 89888888888888753322 12223333333332 124667777777777777653221 1112
Q ss_pred hHHHHHHhh-----------------------cCCChHHHHHHHHhhHHhhhhh-------ch----------hhHhhhH
Q 016814 154 LLPIFLSLL-----------------------KDEFPDVRLNIISKLDQVNQVI-------GI----------DLLSQSL 193 (382)
Q Consensus 154 l~~~l~~~l-----------------------~d~~~~vr~~~~~~l~~~~~~~-------~~----------~~~~~~l 193 (382)
+-.++.+.. -+++..+|..++..+++|...- +- ....+..
T Consensus 272 M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH 351 (866)
T KOG1062|consen 272 MNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH 351 (866)
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH
Confidence 222222221 1356778999999998876431 11 1223566
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH--HHH---
Q 016814 194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAM--- 268 (382)
Q Consensus 194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~--- 268 (382)
-..+.++++|++..+|+.+++..-.+...-.... ++.-++.+|...+.+.|...+.-+..+++.+.++ |+.
T Consensus 352 r~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtm 427 (866)
T KOG1062|consen 352 RSTILECLKDPDVSIKRRALELSYALVNESNVRV----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTM 427 (866)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 7788999999999999999998877765444333 3333444455557777888777777787777653 222
Q ss_pred ------------hhhHHHHHhhhcCc-------------------------chHHHHHHHHHHHHhccccCh--------
Q 016814 269 ------------QHITPQVLEMINNP-------------------------HYLYRMTILRAISLLAPVMGS-------- 303 (382)
Q Consensus 269 ------------~~l~~~l~~~l~~~-------------------------~~~~r~~a~~~l~~l~~~~~~-------- 303 (382)
.++...++.++.+. +...-+.+.|+++..+..+-.
T Consensus 428 l~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~ 507 (866)
T KOG1062|consen 428 LKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPI 507 (866)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCC
Confidence 22333333333221 223455677888777632111
Q ss_pred hhhhhhhHHHHHhhccCC--CccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHH
Q 016814 304 EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQ 370 (382)
Q Consensus 304 ~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~ 370 (382)
......++..+.+.+..- ...++.-++.++.++...+... ...+...+......-+.++++.|.+
T Consensus 508 ~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 508 KVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred cCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHH
Confidence 112234555554444322 2668888999999888776542 3555555666666666667666654
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.22 E-value=4.3e-07 Score=82.06 Aligned_cols=340 Identities=18% Similarity=0.163 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc----c-CCCHHHHHHHHHHHHHHHHHhCCcc-------ccc-chHH
Q 016814 12 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS----Q-DKSWRVRYMVANQLYELCEAVGPEP-------TRM-DLVP 78 (382)
Q Consensus 12 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~----~-d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~-~ll~ 78 (382)
.-.....+++..++. ...+.+.+.+.+.+.+ + ..+...-..++..+..+.+....+. +.+ .++|
T Consensus 17 ~~~~~~L~~l~~ls~---~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~ 93 (415)
T PF12460_consen 17 SNYERILEALAALST---SPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVP 93 (415)
T ss_pred hHHHHHHHHHHHHHC---ChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHH
Confidence 445566666666665 3344455555444433 2 3366777888888888877665433 112 2777
Q ss_pred HHHHhcCC-----C--cHHHHHHHHHHHHHHHHhhCHHHH---HHhhhHhhhh-----hcC-CCc--hHHHHHHHHHHHh
Q 016814 79 AYVRLLRD-----N--EAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKE-----LSS-DSS--QHVRSALASVIMG 140 (382)
Q Consensus 79 ~l~~~l~d-----~--~~~VR~~a~~~l~~l~~~~~~~~~---~~~il~~l~~-----~~~-d~~--~~vr~~a~~~l~~ 140 (382)
.+.+.... . ++.+-..+...+..+.+.++.+.. .+.+...+.. -+. +.. +.........+..
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (415)
T PF12460_consen 94 RLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSA 173 (415)
T ss_pred HHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHH
Confidence 77765522 2 256777777777777888877643 2333333330 000 111 1112222222223
Q ss_pred hccccChHhH---HHhhHHHHHHh-hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHh-cCCCchHHHHHHHH
Q 016814 141 MAPLLGKDAT---IEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEY 215 (382)
Q Consensus 141 l~~~~~~~~~---~~~l~~~l~~~-l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~-~d~~~~vr~~~~~~ 215 (382)
+...+.++.. .+.++.-+.++ .+.+++..|..+++.++.+...+..+...+.++..+.... .......|...++.
T Consensus 174 il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (415)
T PF12460_consen 174 ILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEI 253 (415)
T ss_pred HHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHH
Confidence 3323333322 22344444444 4445699999999999999877655543355555555544 44455566666666
Q ss_pred hHHHHhhh--chhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC---------------hHHHHhhhHHHHHhh
Q 016814 216 IPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---------------PEWAMQHITPQVLEM 278 (382)
Q Consensus 216 l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---------------~~~~~~~l~~~l~~~ 278 (382)
+.-+.+.+ ........+...+..++.| +++...++++++-+....+ ++.+...++|.+.+.
T Consensus 254 ~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~ 331 (415)
T PF12460_consen 254 LIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEG 331 (415)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHH
Confidence 65554433 1122234577777788887 7788889999888876421 234567799999999
Q ss_pred hcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHH
Q 016814 279 INNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCL 353 (382)
Q Consensus 279 l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l 353 (382)
+++.+...|...+.+++.+.++.+.+ ...+.++|.+++.+.-+++.+|.++++++..+...-..- ...+.++|.|
T Consensus 332 ~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 332 FKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL 411 (415)
T ss_pred HhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 98888779999999999999998876 356789999999999999999999999999988755221 1234566655
Q ss_pred HHh
Q 016814 354 VEL 356 (382)
Q Consensus 354 ~~l 356 (382)
.++
T Consensus 412 L~l 414 (415)
T PF12460_consen 412 LKL 414 (415)
T ss_pred Hhc
Confidence 543
No 60
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.18 E-value=1.2e-07 Score=88.46 Aligned_cols=265 Identities=16% Similarity=0.160 Sum_probs=167.8
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 85 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~ 85 (382)
+.+.++..|..|++.+.+... .|. + .+.+.|-+.+.....|.++++..--.+..+++.-+.+.. -.++.+.+-++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~-~G~-d-mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l--LavNti~kDl~ 102 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMS-LGE-D-MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL--LAVNTIQKDLQ 102 (757)
T ss_pred ccccChHHHHHHHHHHHHHHh-cCC-C-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHhhcc
Confidence 345667778888877655433 222 2 455666666666688889999999998888876553322 35888889999
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh-hHHHHHHhhcC
Q 016814 86 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ-LLPIFLSLLKD 164 (382)
Q Consensus 86 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d 164 (382)
|+++.+|..|++.++.+ +...+...+++.++++++|+++.||..|+-++..+-+ ++++...+. ....+..++.|
T Consensus 103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~g~~~~l~~l~~D 177 (757)
T COG5096 103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHELGLIDILKELVAD 177 (757)
T ss_pred CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhcccHHHHHHHHhhC
Confidence 99999999999998864 4455667889999999999999999999999998865 344444444 77888889999
Q ss_pred CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCch--HHHHHHHHhHHHHhhhchhhhH-HHHHHHHHHHhc
Q 016814 165 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR--VRLAIIEYIPLLASQLGVGFFD-DKLGALCMQWLQ 241 (382)
Q Consensus 165 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~--vr~~~~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~ 241 (382)
++|.|..+|..++..+..... ..+...+.-.+.++ .=..|. ....-...+..+.......... ..+...+...+.
T Consensus 178 ~dP~Vi~nAl~sl~~i~~e~a-~~~~~~~~~~i~~l-~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~ 255 (757)
T COG5096 178 SDPIVIANALASLAEIDPELA-HGYSLEVILRIPQL-DLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQ 255 (757)
T ss_pred CCchHHHHHHHHHHHhchhhh-hhHHHHHHHHhhhc-cchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhh
Confidence 999999999999988865411 11112221111111 001122 1222222333333222211111 122222333345
Q ss_pred cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc
Q 016814 242 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP 282 (382)
Q Consensus 242 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~ 282 (382)
..+..+-..+++.+-.+........+.....|.+..++..+
T Consensus 256 ~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~ 296 (757)
T COG5096 256 HNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP 296 (757)
T ss_pred hCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC
Confidence 56777777777777777766655444444555555555444
No 61
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.17 E-value=8.1e-09 Score=91.11 Aligned_cols=293 Identities=13% Similarity=0.146 Sum_probs=192.0
Q ss_pred hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHh-CCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH
Q 016814 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV-GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 110 (382)
Q Consensus 32 ~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~-~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 110 (382)
+...++.|++..+++|+-.-|...+++.+-.++..- +++. ....+..+..++..+....|-+|++.|..++...+...
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~-~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF-VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 456778999999999999999999999988887654 3333 35567777888899989999999999999987665541
Q ss_pred HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHh
Q 016814 111 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 190 (382)
Q Consensus 111 ~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~ 190 (382)
...=+-+..++.|.+..+-.-|+..+-.- |.+...+.++..+..++.|-+..-+.-++.++..++-..+.+.
T Consensus 339 --~vcN~evEsLIsd~Nr~IstyAITtLLKT----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~-- 410 (898)
T COG5240 339 --SVCNKEVESLISDENRTISTYAITTLLKT----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK-- 410 (898)
T ss_pred --eecChhHHHHhhcccccchHHHHHHHHHc----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--
Confidence 22335677788888877666665555443 3355667888888888888777777777777776665554432
Q ss_pred hhHHHHHHHHh-cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHh
Q 016814 191 QSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 269 (382)
Q Consensus 191 ~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 269 (382)
..++..+...+ +.....-+..++..+..+.+..+.. .+..+..+-..+.|... -+.++..++-+.+.-+...-..
T Consensus 411 ~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~ 486 (898)
T COG5240 411 LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPG 486 (898)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcc
Confidence 33444444433 3445566777777777666644321 12233333334444322 1223333333333221111122
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHh
Q 016814 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 337 (382)
Q Consensus 270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 337 (382)
..+.++.+.+.=.+..+|.+|+.++.+++-+.......+.+...+-++++|...+||..|.-++..+-
T Consensus 487 ~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 34445555555567789999999999988665544455667777888999999999999999888775
No 62
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.8e-08 Score=92.16 Aligned_cols=327 Identities=16% Similarity=0.150 Sum_probs=195.0
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Q 016814 34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 113 (382)
Q Consensus 34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~ 113 (382)
...+.|-+.++..-.|-..++.+-..+.+.+..-+... -..++.+..-+.|++|.+|.-|+..++.+ +.+.+.+
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a--~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~e 120 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA--ILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITE 120 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH--HhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHH
Confidence 45567777777777778888888888888776443322 23578888888999999999998887744 3344556
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hhHh
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLS 190 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~~~~ 190 (382)
.+...+.++++|.++.||..++-+...+-..-+.......+++.+..++.|+++.|-.++..++..+.+.-.. -.+.
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence 7888899999999999999999988888754443334468889999999999999999999999988765431 1111
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh-hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHH
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWA 267 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~ 267 (382)
..++..+.+.++.-+..-+... +..++....... -...++..+...+...+..|--.+.+.+-.+.+.+.. +.+
T Consensus 201 ~~~~~~lL~al~ec~EW~qi~I---L~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~ 277 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQIFI---LDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELL 277 (734)
T ss_pred HHHHHHHHHHHHHhhhhhHHHH---HHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHH
Confidence 2222223332222221112333 333333332222 1234666666667777777777777777766665544 233
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHH
Q 016814 268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEK 347 (382)
Q Consensus 268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~ 347 (382)
...+-|.+..++..+. .+...++.-+..+...... .+..++ -.|+--.+|+.+ |+..-++.+..++.. ....
T Consensus 278 ~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~~-~~Ff~kynDPiY-vK~eKleil~~la~~----~nl~ 349 (734)
T KOG1061|consen 278 FKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVEI-KVFFCKYNDPIY-VKLEKLEILIELAND----ANLA 349 (734)
T ss_pred HHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhHh-HeeeeecCCchh-hHHHHHHHHHHHhhH----hHHH
Confidence 3445555555554444 5555566555555443332 111111 111112233322 444444544444321 2233
Q ss_pred hHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 348 TIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 348 ~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
+++..+.....+-|.+.-..+.+|++.++-
T Consensus 350 qvl~El~eYatevD~~fvrkaIraig~~ai 379 (734)
T KOG1061|consen 350 QVLAELKEYATEVDVDFVRKAVRAIGRLAI 379 (734)
T ss_pred HHHHHHHHhhhhhCHHHHHHHHHHhhhhhh
Confidence 455666666666666655566666665543
No 63
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.3e-06 Score=82.93 Aligned_cols=374 Identities=18% Similarity=0.150 Sum_probs=218.5
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC-cccccchHHHHH
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYV 81 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~ 81 (382)
..++|.+..||-.|++.++.+...++.+ ..++++.-+.++.. -+++..=..+|-.|+.++..--- ......++|.+.
T Consensus 348 s~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~ 426 (1133)
T KOG1943|consen 348 SALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLIL 426 (1133)
T ss_pred HhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3467899999999999999999999853 33333333333332 11234445899999888853211 111235788887
Q ss_pred HhcC--------CCcHHHHHHHHHHHHHHHHhhCHHHH---HHhhhH-hhhhhcCCCchHHHHHHHHHHHhhccccCh--
Q 016814 82 RLLR--------DNEAEVRIAAAGKVTKFCRILNPELA---IQHILP-CVKELSSDSSQHVRSALASVIMGMAPLLGK-- 147 (382)
Q Consensus 82 ~~l~--------d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~il~-~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-- 147 (382)
..+. .....||.+|+..+=.+++...+... .+.+.+ .+...+-|.+..+|.+|.-++-+.....|.
T Consensus 427 kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p 506 (1133)
T KOG1943|consen 427 KALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFP 506 (1133)
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCC
Confidence 6553 23467999999999999988776633 333434 334467799999999998887765433221
Q ss_pred ---H-------------------------hHHHhhHHHHHHhh----cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHH
Q 016814 148 ---D-------------------------ATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 195 (382)
Q Consensus 148 ---~-------------------------~~~~~l~~~l~~~l----~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp 195 (382)
+ .+....-|++..++ ..-++.+|..++.++..+....+ +......+|
T Consensus 507 ~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p-k~~a~~~L~ 585 (1133)
T KOG1943|consen 507 HGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP-KYLADYVLP 585 (1133)
T ss_pred CchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH-Hhhcccchh
Confidence 0 01122334444443 34578899999999999655432 222233333
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHHH-------------------------------------------------hhh---
Q 016814 196 AIVELAEDRHWRVRLAIIEYIPLLA-------------------------------------------------SQL--- 223 (382)
Q Consensus 196 ~l~~~~~d~~~~vr~~~~~~l~~l~-------------------------------------------------~~~--- 223 (382)
.+.......+...|....-..+.+. +.+
T Consensus 586 ~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s 665 (1133)
T KOG1943|consen 586 PLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLS 665 (1133)
T ss_pred hhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhc
Confidence 3333322222222222221111111 100
Q ss_pred ch----hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh-HH-HHhhhHHHHHhhhcCc-chHHHHHHHHHHHH
Q 016814 224 GV----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EW-AMQHITPQVLEMINNP-HYLYRMTILRAISL 296 (382)
Q Consensus 224 ~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~-~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~ 296 (382)
.. +.+......++.+.+.+++ .+|.+|..+++.++..+-. +. ....++...+..+.+. +..+|.....+++.
T Consensus 666 ~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~ 744 (1133)
T KOG1943|consen 666 KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGV 744 (1133)
T ss_pred cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHcc
Confidence 01 1111223333444445556 7899999999999876532 21 2223556666666666 57888888888777
Q ss_pred hccccChhhhhhhhHHHHHhhcc-CCCccHHHHHHHHHHHHhhhhhH-------HHHHHhHHHHHHHhcCCCCcc----H
Q 016814 297 LAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ-------SMVEKTIRPCLVELTEDPDVD----V 364 (382)
Q Consensus 297 l~~~~~~~~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~i~~~~~~-------~~~~~~i~~~l~~l~~d~~~~----v 364 (382)
+....-.-...+++...++...- |..+.-|...+.++..+....+. +.+...++.++.....|..-+ |
T Consensus 745 lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswV 824 (1133)
T KOG1943|consen 745 LPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWV 824 (1133)
T ss_pred CcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHH
Confidence 65322111234445444444433 33677899999999999888772 233345555555555554333 7
Q ss_pred HhHHHHHHHHHHHHhc
Q 016814 365 RFFATQAIQSIDHVMM 380 (382)
Q Consensus 365 r~~a~~al~~~~~~~~ 380 (382)
|..|.+++..+...+.
T Consensus 825 ReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 825 REAAMKALSSLLDTLS 840 (1133)
T ss_pred HHHHHHHHHhhhhhhc
Confidence 9999999988876554
No 64
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.8e-06 Score=78.58 Aligned_cols=358 Identities=13% Similarity=0.108 Sum_probs=199.5
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 83 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~ 83 (382)
.|++..-|.+|+.|+-.+-.+--..+. . ...-.|.+.+-+.|+|+.|..+|+..+=.+++.-+.... .+-|.|.++
T Consensus 151 tLL~sskpYvRKkAIl~lykvFLkYPe-A-lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--~LAP~ffkl 226 (877)
T KOG1059|consen 151 TLLNSSKPYVRKKAILLLYKVFLKYPE-A-LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--QLAPLFYKL 226 (877)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhhH-h-HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--cccHHHHHH
Confidence 467888899999988777766554432 2 344667788888999999999999998888876655442 467888887
Q ss_pred cCC--CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc-----c-ChHhHHHhhH
Q 016814 84 LRD--NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-----L-GKDATIEQLL 155 (382)
Q Consensus 84 l~d--~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~-----~-~~~~~~~~l~ 155 (382)
+.+ ++|.. ...++.++.+...-+. .-.+++|.+.+++...... +..-+++..+... . +.....+..+
T Consensus 227 lttSsNNWmL-IKiiKLF~aLtplEPR--LgKKLieplt~li~sT~Am--SLlYECvNTVVa~s~s~g~~d~~asiqLCv 301 (877)
T KOG1059|consen 227 LVTSSNNWVL-IKLLKLFAALTPLEPR--LGKKLIEPITELMESTVAM--SLLYECVNTVVAVSMSSGMSDHSASIQLCV 301 (877)
T ss_pred HhccCCCeeh-HHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHHH--HHHHHHHHHheeehhccCCCCcHHHHHHHH
Confidence 754 34542 2345555555432221 1235677777776554321 1222233322221 1 1222345666
Q ss_pred HHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch----------
Q 016814 156 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------- 225 (382)
Q Consensus 156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---------- 225 (382)
.-+..++.|.+++++--.+-+++.+.+..+. ..+.....+..++.|.+..+|..++..+..+...-.-
T Consensus 302 qKLr~fiedsDqNLKYlgLlam~KI~ktHp~--~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~ 379 (877)
T KOG1059|consen 302 QKLRIFIEDSDQNLKYLGLLAMSKILKTHPK--AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKH 379 (877)
T ss_pred HHHhhhhhcCCccHHHHHHHHHHHHhhhCHH--HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7778888899999999998888888876542 2255667788888888888888888776655432111
Q ss_pred ------hhhHHHHHHHHHHHhccchhHHHHHH---HHHHHHHHHHhCh-----------------HHHHhhhHHHHHhhh
Q 016814 226 ------GFFDDKLGALCMQWLQDKVYSIRDAA---ANNLKRLAEEFGP-----------------EWAMQHITPQVLEMI 279 (382)
Q Consensus 226 ------~~~~~~l~~~l~~~l~d~~~~vr~~a---~~~l~~~~~~~~~-----------------~~~~~~l~~~l~~~l 279 (382)
..+.+.++..+...+.-.+...-..- +..+..++...|. +..+...+..+..++
T Consensus 380 ~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll 459 (877)
T KOG1059|consen 380 VEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALL 459 (877)
T ss_pred HHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHH
Confidence 12223333333332221111110000 1112222211111 011122222233333
Q ss_pred cCc-----------chHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCC-ccHHHHHHHHHHHHhhhhh----H-
Q 016814 280 NNP-----------HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVD----Q- 342 (382)
Q Consensus 280 ~~~-----------~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~-~~vR~~a~~~l~~i~~~~~----~- 342 (382)
.|+ -+.+-.+|++++|.+++..... ..++..+++--.+-- ..+...-++++..+...+- +
T Consensus 460 ~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~ 536 (877)
T KOG1059|consen 460 DDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---NDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEET 536 (877)
T ss_pred hchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---HHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 322 2567778889998888665432 223333333222211 2355555555555443321 1
Q ss_pred ------HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814 343 ------SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 343 ------~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 375 (382)
......++..|.++....+-+|+..|..++.-+
T Consensus 537 ~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li 575 (877)
T KOG1059|consen 537 KDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELI 575 (877)
T ss_pred cchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHH
Confidence 123467777788888888999999876666544
No 65
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.6e-06 Score=80.39 Aligned_cols=129 Identities=18% Similarity=0.088 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc--------CcchHHHHHHHHHHHHhccccChh-----hhhhhhHHHHH
Q 016814 249 DAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--------NPHYLYRMTILRAISLLAPVMGSE-----ITCSRLLPVVI 315 (382)
Q Consensus 249 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~ 315 (382)
.+|...+..++++-|++.+.+ +++.+.+.++ ..+++.+..|+..++.+++.+..+ .+...+++.++
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l~k-~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETLPK-ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred HHHHHHHHHHHHhcchhhhhh-HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 457777888888777765543 6666666554 345788999999999998776543 23344567888
Q ss_pred hhccCCCccHHHHHHHHHHHHh-hhhhHHHHHHhHHHHHHHhcC-CCCccHHhHHHHHHHHHHHH
Q 016814 316 NASKDRVPNIKFNVAKVLQSLI-PIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 316 ~~l~d~~~~vR~~a~~~l~~i~-~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~~~~~ 378 (382)
..++++.--.|..|+..++.++ ..+..+.....++....+++. |++-.||..|+-|++.+...
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~ 533 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISN 533 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhc
Confidence 8899988889999999999998 567766667777777777554 99999999999999988653
No 66
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=2.8e-06 Score=83.43 Aligned_cols=361 Identities=13% Similarity=0.091 Sum_probs=202.9
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 81 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 81 (382)
|-..++++...+|..|++++..++..=+.--..+.+...+..-+.|.+..||.+|++.+|...-..+ ....++...+.
T Consensus 821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--e~~~qyY~~i~ 898 (1692)
T KOG1020|consen 821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--ELIFQYYDQII 898 (1692)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH--HHHHHHHHHHH
Confidence 3345678889999999999999988544434455566667777889999999999999998764332 22345677788
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc--cccC--h----------
Q 016814 82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA--PLLG--K---------- 147 (382)
Q Consensus 82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~--~~~~--~---------- 147 (382)
+...|+...||+.+++.+..++...+.-.....+.-.+..-.+|+...|...+.+.+..+. +.-+ .
T Consensus 899 erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~ 978 (1692)
T KOG1020|consen 899 ERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISL 978 (1692)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHH
Confidence 8889999999999999999998866544333344444445556666667666666666542 0000 0
Q ss_pred ------------HhHHHhhHHHH-HHhh---------------------------------------cCCChHHHH-HHH
Q 016814 148 ------------DATIEQLLPIF-LSLL---------------------------------------KDEFPDVRL-NII 174 (382)
Q Consensus 148 ------------~~~~~~l~~~l-~~~l---------------------------------------~d~~~~vr~-~~~ 174 (382)
..+.++++..+ .... +++...+|. +++
T Consensus 979 ~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~l 1058 (1692)
T KOG1020|consen 979 EVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYL 1058 (1692)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHH
Confidence 00111111111 1100 011111111 122
Q ss_pred HhhHHhhhhhch---hhHhhhHHHHHHHHhcC-CCchHHHHHHHHhHHHHhhh--chhhhHHHHHHHHHHHhccchhHHH
Q 016814 175 SKLDQVNQVIGI---DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIR 248 (382)
Q Consensus 175 ~~l~~~~~~~~~---~~~~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr 248 (382)
..|..++..-+. ......+.|.+..-+.. ...++-..++..+......+ .++.|...+-..+.+.+-......-
T Consensus 1059 stL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V 1138 (1692)
T KOG1020|consen 1059 STLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATV 1138 (1692)
T ss_pred HHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHH
Confidence 222222211100 01112233333322111 11233333444444333322 2344445555556665555566666
Q ss_pred HHHHHHHHHHHHHhChHH-HHhhhHHHHHhhh---c----Cc----chHHHHHHHHHHHHhccccC--------hh----
Q 016814 249 DAAANNLKRLAEEFGPEW-AMQHITPQVLEMI---N----NP----HYLYRMTILRAISLLAPVMG--------SE---- 304 (382)
Q Consensus 249 ~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~l---~----~~----~~~~r~~a~~~l~~l~~~~~--------~~---- 304 (382)
..++.+++.++....... ....++..+...+ + +. +...-...+.+++.+++++. ..
T Consensus 1139 ~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~ 1218 (1692)
T KOG1020|consen 1139 VEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQE 1218 (1692)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhh
Confidence 777888888887643221 1222222222222 1 11 22344556777888876432 11
Q ss_pred --hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccH
Q 016814 305 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 364 (382)
Q Consensus 305 --~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~v 364 (382)
...+.++..+..+.++....+|..|+.+||.++-....=.+...+.-.+.+.+.|...++
T Consensus 1219 ~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~ 1280 (1692)
T KOG1020|consen 1219 GETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDI 1280 (1692)
T ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccH
Confidence 245667777777788888999999999999998765544556677777777666544443
No 67
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.2e-07 Score=86.21 Aligned_cols=338 Identities=15% Similarity=0.107 Sum_probs=201.9
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhh-CHHHH
Q 016814 34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRIL-NPELA 111 (382)
Q Consensus 34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~-~~~~~ 111 (382)
.+.++..+.+.++|.+..||+.+++.++.+...++.+. ..+++...+++++-- ++..-..++-+|+.++..- -....
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 34566777788899999999999999999999888543 244555555543321 2344458888898887642 22223
Q ss_pred HHhhhHhhhhhcC--------CCchHHHHHHHHHHHhhccccChHhHH---HhhHH-HHHHhhcCCChHHHHHHHHhhHH
Q 016814 112 IQHILPCVKELSS--------DSSQHVRSALASVIMGMAPLLGKDATI---EQLLP-IFLSLLKDEFPDVRLNIISKLDQ 179 (382)
Q Consensus 112 ~~~il~~l~~~~~--------d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~-~l~~~l~d~~~~vr~~~~~~l~~ 179 (382)
...++|.+.+.+. .....||.+++..+..++....+.... +.+.+ .+...+=|.+-++|+++..++-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 4567788877553 234589999999999999877655332 22332 23344668899999999888766
Q ss_pred hhhhh-----chh-------------------------hHhhhHHHHHHHHhc----CCCchHHHHHHHHhHHHHhhhch
Q 016814 180 VNQVI-----GID-------------------------LLSQSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLGV 225 (382)
Q Consensus 180 ~~~~~-----~~~-------------------------~~~~~llp~l~~~~~----d~~~~vr~~~~~~l~~l~~~~~~ 225 (382)
...-. |.+ .+....-|.+..++. +-+..+|..++.++..+.... +
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~-p 576 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE-P 576 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh-H
Confidence 43221 111 111123334444433 334468999999999976543 4
Q ss_pred hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh-H--------HH---HhhhHHHHHhhhcCcc--hHHHHHHH
Q 016814 226 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-E--------WA---MQHITPQVLEMINNPH--YLYRMTIL 291 (382)
Q Consensus 226 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~--------~~---~~~l~~~l~~~l~~~~--~~~r~~a~ 291 (382)
+.+.+..+|.+.......+...|.....+.+.++..+.. + .- ..+++|.+....-.+. .-.|.+.+
T Consensus 577 k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~ 656 (1133)
T KOG1943|consen 577 KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATL 656 (1133)
T ss_pred HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHH
Confidence 444555666666666677888888888888888765422 1 00 0112333333222222 45666777
Q ss_pred HHHHHhccccC---hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh--HHHHH-HhHHHHHHHhcCCCCccHH
Q 016814 292 RAISLLAPVMG---SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSMVE-KTIRPCLVELTEDPDVDVR 365 (382)
Q Consensus 292 ~~l~~l~~~~~---~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~--~~~~~-~~i~~~l~~l~~d~~~~vr 365 (382)
.++..+.-.-. .+.+.+...-.+.+.+.+++ .+|..+..+++.+...+- ++... ..+...+..+.+..+..+|
T Consensus 657 ~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r 735 (1133)
T KOG1943|consen 657 KFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIR 735 (1133)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHH
Confidence 77766643222 12233333444555566666 899999999998876542 11111 2333444444444455566
Q ss_pred hHHHHHHHH
Q 016814 366 FFATQAIQS 374 (382)
Q Consensus 366 ~~a~~al~~ 374 (382)
....-+++.
T Consensus 736 ~g~~lal~~ 744 (1133)
T KOG1943|consen 736 RGLILALGV 744 (1133)
T ss_pred HHHHHHHcc
Confidence 555555443
No 68
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=5.6e-06 Score=79.72 Aligned_cols=335 Identities=13% Similarity=0.164 Sum_probs=222.5
Q ss_pred chHHHHHHHHHHHHHHhccCh-----------hhhhhhhhhhhhhhccCC------CHHHHHHHHHHHH-HHHHHhCCcc
Q 016814 10 QDSVRLLAVEGCAALGKLLEP-----------QDCVAHILPVIVNFSQDK------SWRVRYMVANQLY-ELCEAVGPEP 71 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~ll~~l~~~~~d~------~~~vR~~a~~~l~-~l~~~~~~~~ 71 (382)
.+..|.....+|..++....+ .....-++|.+....... ....|...+..+. ...+.. ...
T Consensus 530 ~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t-~~d 608 (1176)
T KOG1248|consen 530 RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVT-PTD 608 (1176)
T ss_pred chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcc-cHH
Confidence 347787777777777775411 112233566666554322 2344444444444 222221 222
Q ss_pred cccchHHHHHHhcCCCcHHH----HHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh
Q 016814 72 TRMDLVPAYVRLLRDNEAEV----RIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 72 ~~~~ll~~l~~~l~d~~~~V----R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 147 (382)
....+...+.+...+.+..+ +...+..+..++...+.+.+.. +....-..-+..+..++..+.+.|..+...-..
T Consensus 609 v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~-l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~ 687 (1176)
T KOG1248|consen 609 VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSK-LFTVDPEFENSSSTKVQKKAYRLLEELSSSPSG 687 (1176)
T ss_pred HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHH-HHHhhHHhhccccHHHHHHHHHHHHHHhcCCch
Confidence 22345555566666654333 3334444444455444444433 333333444556889999999999999876221
Q ss_pred ----HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhh--HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH-
Q 016814 148 ----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA- 220 (382)
Q Consensus 148 ----~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~- 220 (382)
+...+.+...+.+-+++.+...|...++++..+.+..+.+. +....+|.+.-..++.|..-|+.+..+|..++
T Consensus 688 ~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 688 EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence 12345666777777778888899999999999988887543 23445555544558888888999888888777
Q ss_pred -hhh---chhh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHH
Q 016814 221 -SQL---GVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI 290 (382)
Q Consensus 221 -~~~---~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a 290 (382)
... |.+. ..+.+++.+...+......++...+-+++.+...++. +.+...++..+.-++...+..++.+|
T Consensus 768 i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaA 847 (1176)
T KOG1248|consen 768 IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAA 847 (1176)
T ss_pred HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 222 3222 3456677777666666666766667777777766543 45677888899999999999999999
Q ss_pred HHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHH
Q 016814 291 LRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE 346 (382)
Q Consensus 291 ~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~ 346 (382)
+.++..++..++.. .+.+.++|.++.+.+|....+|...-..+..+...+|.+.+.
T Consensus 848 I~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 848 IGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999888865 567789999999999999999999999999999999977543
No 69
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.00 E-value=2.7e-06 Score=80.15 Aligned_cols=358 Identities=15% Similarity=0.179 Sum_probs=217.5
Q ss_pred chHHHHHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcC
Q 016814 10 QDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR 85 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~ 85 (382)
+...| .+...+..++..... .-....+++.+.++++.++..+...++..|.+++-.... ......++|.+.+++.
T Consensus 263 eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 33444 566777888775433 223455778888888888999999999999888743222 2233568999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHh--hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH--hHHHhhHHHHHHh
Q 016814 86 DNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSL 161 (382)
Q Consensus 86 d~~~~VR~~a~~~l~~l~~~--~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~ 161 (382)
.++..++..++..|.++.-. .....+...++|.+..+++|++ .|..+...+..++..-... ......+|.+.++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 99999999999999998532 2223455679999999998764 5567778888877422111 1225667887776
Q ss_pred hcC-CChHHHHHHHHhhHHhhhhhc-hhhH-hhhHHHHHHHH-hcCCCchHHHHHHHHhHHHHhhhch--hhhHHHHHHH
Q 016814 162 LKD-EFPDVRLNIISKLDQVNQVIG-IDLL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGAL 235 (382)
Q Consensus 162 l~d-~~~~vr~~~~~~l~~~~~~~~-~~~~-~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~ 235 (382)
+.. +.+.+...++..+..++..-. .+.+ ....++.+... ++..+ ..+++.+..++.+-|+ ..|.+.+.++
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~L 495 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELFVDFIGDL 495 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 443 455555544333333322110 0111 11233444333 23222 3345566666655443 2233333333
Q ss_pred HHHHhcc-chhHHHHHHHHHHHHHHHHh----ChHHHH--hhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccC--hh
Q 016814 236 CMQWLQD-KVYSIRDAAANNLKRLAEEF----GPEWAM--QHITPQVLEMINNPH--YLYRMTILRAISLLAPVMG--SE 304 (382)
Q Consensus 236 l~~~l~d-~~~~vr~~a~~~l~~~~~~~----~~~~~~--~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~--~~ 304 (382)
+ ..+.. .++ +..++++|.++..- +...+. ..++|.+.+.+..+. ..+...++.+++.++..-. .-
T Consensus 496 ~-~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~l 571 (708)
T PF05804_consen 496 A-KIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPL 571 (708)
T ss_pred H-HHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 3 33433 334 34455555554321 112222 368999998886442 3566666777776653222 22
Q ss_pred hhhhhhHHHHHhhccCCC--ccHHHHHHHHHHHHhhhhhHHH---HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 305 ITCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 305 ~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
.....+++.++.++++.. .+.-...+.++..+..+-.... ....+...+..+.+|++.+||..+-.++..++..
T Consensus 572 L~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 572 LAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 234567788888776554 4577777778877776533322 1256778888899999999999999999988764
No 70
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.4e-06 Score=79.62 Aligned_cols=352 Identities=13% Similarity=0.150 Sum_probs=209.3
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc-ccccchHHHHHHhc
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLL 84 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l 84 (382)
+++++..+|-..++.+..+ ...+..+.++|.+.++++..+..||+.|+-++..+-..+..- ...++++..+ +.
T Consensus 108 LQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~f--L~ 181 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESF--LL 181 (948)
T ss_pred ccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHH--HH
Confidence 6788999998888877654 445667779999999999999999999999888776653221 1112344444 33
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcC
Q 016814 85 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 164 (382)
Q Consensus 85 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 164 (382)
.+.++..+..|.-.|.. .+++...+.+...+.+ +.+-++......++.+...+..-+. .....+..+..++..
T Consensus 182 ~e~DpsCkRNAFi~L~~----~D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~p~--~~~~~i~~i~~lL~s 254 (948)
T KOG1058|consen 182 TEQDPSCKRNAFLMLFT----TDPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLANPA--EKARYIRCIYNLLSS 254 (948)
T ss_pred hccCchhHHHHHHHHHh----cCHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcCHH--HhhHHHHHHHHHHhc
Confidence 45566655555555443 3444333222222221 2233445556666666666652221 235667788888888
Q ss_pred CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHh-cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccc
Q 016814 165 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 243 (382)
Q Consensus 165 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 243 (382)
+++.|+-.++-++..+... +..+ ..--..+..++ +.++.+++.-....+..+. ......+. .+.--+...+..+
T Consensus 255 tssaV~fEaa~tlv~lS~~--p~al-k~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~il~-~l~mDvLrvLss~ 329 (948)
T KOG1058|consen 255 TSSAVIFEAAGTLVTLSND--PTAL-KAAASTYIDLLVKESDNNVKLIVLDRLSELK-ALHEKILQ-GLIMDVLRVLSSP 329 (948)
T ss_pred CCchhhhhhcceEEEccCC--HHHH-HHHHHHHHHHHHhccCcchhhhhHHHHHHHh-hhhHHHHH-HHHHHHHHHcCcc
Confidence 8999998888777666532 1111 11112222222 3445566666666666655 12222333 3433456778899
Q ss_pred hhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh---cCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccC
Q 016814 244 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD 320 (382)
Q Consensus 244 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l---~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d 320 (382)
+-+||..++...-.++.....+.....+-..+...- .+.+...|+.-+..+...+-.++. +...++|.++.++.|
T Consensus 330 dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD 407 (948)
T KOG1058|consen 330 DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISD 407 (948)
T ss_pred cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhcc
Confidence 999999999888777765443332222222222211 234566788888888887766654 678899999999999
Q ss_pred CCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHh-cCCCCccHHhHHHHHHHHHHHHh
Q 016814 321 RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDHVM 379 (382)
Q Consensus 321 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~~~ 379 (382)
.|+..-...+..+....+.+++ ....++..+... -.=...++-..|++.++......
T Consensus 408 ~N~~aas~vl~FvrE~iek~p~--Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 408 SNEAAASDVLMFVREAIEKFPN--LRASIIEKLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred CCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 9987776666666666665542 122233333322 22234555566666666555443
No 71
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.1e-05 Score=77.73 Aligned_cols=344 Identities=13% Similarity=0.127 Sum_probs=226.9
Q ss_pred hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC-----------cccccchHHHHHHhcCCCc------HHHHHHHHHH
Q 016814 36 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-----------EPTRMDLVPAYVRLLRDNE------AEVRIAAAGK 98 (382)
Q Consensus 36 ~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~ll~~l~~~l~d~~------~~VR~~a~~~ 98 (382)
.+-|.+...+.-. +..|...|..|..+.+...+ ..+....+|.+++....+. ...|...+..
T Consensus 518 ~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~ 596 (1176)
T KOG1248|consen 518 DLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEI 596 (1176)
T ss_pred HHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHH
Confidence 3555555444433 38999999999988876411 1122347888887665432 3455555555
Q ss_pred HHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHH----HHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHH
Q 016814 99 VTKFCRILNPELAIQHILPCVKELSSDSSQHVR----SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII 174 (382)
Q Consensus 99 l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr----~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~ 174 (382)
+....-...+..+...+...+.+...|.+..++ ...+..+..++...+.+. ...++.+....-+..+..++..+.
T Consensus 597 i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~y 675 (1176)
T KOG1248|consen 597 IRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAY 675 (1176)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHH
Confidence 552222223333344555666666666654433 333344444444444332 234445555555666889999999
Q ss_pred HhhHHhhhhhchhhH----hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh--HHHHHHHHHHHhccchhHHH
Q 016814 175 SKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIR 248 (382)
Q Consensus 175 ~~l~~~~~~~~~~~~----~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr 248 (382)
..|..+....+.+.+ ...+...+..-+++.....|...+.++..+.+..+.+.. ....+|-++-.+++.+..-|
T Consensus 676 rlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR 755 (1176)
T KOG1248|consen 676 RLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKAR 755 (1176)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 999988876322222 234444555555666778899999999999988874332 24455555545589899999
Q ss_pred HHHHHHHHHHH--HH---hChHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc---ChhhhhhhhHHHHHhh
Q 016814 249 DAAANNLKRLA--EE---FGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINA 317 (382)
Q Consensus 249 ~~a~~~l~~~~--~~---~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~~~~~~~l~~l~~~ 317 (382)
+.|..+|-.+. .. .|.+. ..+.+++.+...+......++.+-+-++..+...+ ..+.+...++..+..+
T Consensus 756 ~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~ 835 (1176)
T KOG1248|consen 756 RNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLY 835 (1176)
T ss_pred hhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99988888887 22 23332 45667788887776666555555455555554332 2345788899999999
Q ss_pred ccCCCccHHHHHHHHHHHHhhhhhHHH---HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 318 SKDRVPNIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 318 l~d~~~~vR~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
+...++++|.+|+..+..+...+.... ..+.++|.+..+++|....+|..+-..+..+...+|.
T Consensus 836 L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 836 LASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 999999999999999999998887653 4467899999999999999999999999999888774
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.5e-06 Score=79.21 Aligned_cols=221 Identities=16% Similarity=0.134 Sum_probs=150.7
Q ss_pred hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH
Q 016814 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 111 (382)
Q Consensus 32 ~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 111 (382)
+....+-+-+..+++..-+.+|+-|+-.+..+.-.-++.. ..-+|.+.+-+.|+++.|..+|...+-.+++.-++...
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 3445566777778888888899988888888876554432 23588888888999999999988888888877665532
Q ss_pred HHhhhHhhhhhcC-CCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCCh-HHHHHHHHhhHHh--hhhhch-
Q 016814 112 IQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQV--NQVIGI- 186 (382)
Q Consensus 112 ~~~il~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~~--~~~~~~- 186 (382)
.+-|.|.+++. +.+-++-...++.++.+...=++ .-..++|.++++++.... .+--.++..+-.. ....+.
T Consensus 218 --~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 218 --QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred --cccHHHHHHHhccCCCeehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence 45677777664 34556777777888877753221 235778888888876542 2333333333222 111111
Q ss_pred hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814 187 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260 (382)
Q Consensus 187 ~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 260 (382)
+...+--+.-+..++.|.++..|.-.+-+++.+++.-.... ..-..++..+|.|.+..+|..|+..+--++.
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V--qa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV--QAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH--HHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 12224456777888899999999999999999886443322 2345677889999999999999998877664
No 73
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.94 E-value=8.8e-06 Score=76.40 Aligned_cols=265 Identities=14% Similarity=0.106 Sum_probs=131.8
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccc-hHHHHHHhc
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLL 84 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~-ll~~l~~~l 84 (382)
++|++|.+|-.|++.++.+ +...+++.+++.+.++++|+++.||+.|+-++.++-+ ++++.+... ....+..++
T Consensus 101 l~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~g~~~~l~~l~ 175 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHELGLIDILKELV 175 (757)
T ss_pred ccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhcccHHHHHHHHh
Confidence 5677777887777777664 3345666777777777777777888877777776654 333333333 566666677
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHHH--HHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814 85 RDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 161 (382)
Q Consensus 85 ~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 161 (382)
.|++|.|..+|+.++..+-........ ....+|.+.-...+. ...++......+.........+ ...+...+.--
T Consensus 176 ~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s--~~~~~~~~~~~ 253 (757)
T COG5096 176 ADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDS--AEDFEERLSPP 253 (757)
T ss_pred hCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCc--HHHHHHhccch
Confidence 777777777777777666443111100 011122222111111 1334444444433333222211 11111222222
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHH-Hhhhc----------------
Q 016814 162 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL-ASQLG---------------- 224 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l-~~~~~---------------- 224 (382)
....++.|-..+++.+..+........+.....|.+..++..+ .......+.....+ .+...
T Consensus 254 ~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~ 332 (757)
T COG5096 254 LQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP-ESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYND 332 (757)
T ss_pred hhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC-HHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccc
Confidence 2233555555555555555444433333233333343333222 11111111111110 00000
Q ss_pred ----------------hhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc
Q 016814 225 ----------------VGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN 280 (382)
Q Consensus 225 ----------------~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~ 280 (382)
...-..++++-+.....+ .+.++-..++++|+.+.... +.....++..+++.+.
T Consensus 333 ~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~--~s~~~~~I~~~lel~~ 404 (757)
T COG5096 333 DIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKA--ESSVNDCISELLELLE 404 (757)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHhcc
Confidence 000012345555555666 77888888899999988765 3334567777777776
No 74
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.92 E-value=9e-09 Score=71.35 Aligned_cols=88 Identities=26% Similarity=0.351 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCCCc
Q 016814 13 VRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNE 88 (382)
Q Consensus 13 vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~l~d~~ 88 (382)
.|+.++.++..++-.++. ....+.++|.+..++.|++++||+.++++|.++++..+.+.. ..++++.+.+++.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 477778888877777665 445667888888888999999999999999988887766542 3567888888888888
Q ss_pred HHHHHHHHHHHHH
Q 016814 89 AEVRIAAAGKVTK 101 (382)
Q Consensus 89 ~~VR~~a~~~l~~ 101 (382)
+.||.+| +.|-+
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 8888876 44443
No 75
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.91 E-value=9.2e-09 Score=71.29 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCc
Q 016814 52 VRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSS 127 (382)
Q Consensus 52 vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~ 127 (382)
.|+.++-+|..++..++.. .+.+.++|.++.++.|++++||..|+++|.++++..+.+ .+.+.+++.+.+++.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4888999999999888875 344679999999999999999999999999999888766 345678888889999999
Q ss_pred hHHHHHHH
Q 016814 128 QHVRSALA 135 (382)
Q Consensus 128 ~~vr~~a~ 135 (382)
+.||.++.
T Consensus 82 ~~Vr~~a~ 89 (97)
T PF12755_consen 82 ENVRSAAE 89 (97)
T ss_pred hhHHHHHH
Confidence 99998883
No 76
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.90 E-value=1.9e-05 Score=71.45 Aligned_cols=333 Identities=16% Similarity=0.166 Sum_probs=203.2
Q ss_pred hhhhhhccCCCH---HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC-----CCcHHHHHHHHHHHHHHHHhhCHH-
Q 016814 39 PVIVNFSQDKSW---RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-----DNEAEVRIAAAGKVTKFCRILNPE- 109 (382)
Q Consensus 39 ~~l~~~~~d~~~---~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-----d~~~~VR~~a~~~l~~l~~~~~~~- 109 (382)
|.+...+.|.+. .-.+...+.++.++ ........+.+.+.+.+. ..+...-...+.++..+.+....+
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls---~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALS---TSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHH---CChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 455556655544 34455555555555 333333334444443332 125566677778887776654222
Q ss_pred ------HHHH-hhhHhhhhhcC-----CC--chHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhc----------CC
Q 016814 110 ------LAIQ-HILPCVKELSS-----DS--SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK----------DE 165 (382)
Q Consensus 110 ------~~~~-~il~~l~~~~~-----d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----------d~ 165 (382)
.+.+ .++|.+.+... +. ++.+-..+...+..+...++.+... .++..+..+.- +.
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~-~~~~~~~~lf~~~~~~~~~~~~~ 157 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQ-EILDELYSLFLSPKSFSPFQPSS 157 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHccccccCCCCccc
Confidence 2222 37777776541 22 3667777777888787777755422 22322222221 11
Q ss_pred C--hHHHHHHHHhhHHhhhhhchhhH---hhhHHHHHHHH-hcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH
Q 016814 166 F--PDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 239 (382)
Q Consensus 166 ~--~~vr~~~~~~l~~~~~~~~~~~~---~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 239 (382)
+ .........-+..+...+.++.. .+.++..+..+ ....++..|..+.+.+..++.++......+.++..+...
T Consensus 158 ~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~ 237 (415)
T PF12460_consen 158 STISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQS 237 (415)
T ss_pred cccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhh
Confidence 1 11222222233333333333211 12355555554 345568999999999999998875554444555555554
Q ss_pred h-ccchhHHHHHHHHHHHHHHHHh--ChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc--------C------
Q 016814 240 L-QDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM--------G------ 302 (382)
Q Consensus 240 l-~d~~~~vr~~a~~~l~~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~--------~------ 302 (382)
. .......|..++..+.-+.+.+ ........++..+.+.+.+ ..+...++.+++.+.... +
T Consensus 238 ~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklL 315 (415)
T PF12460_consen 238 ISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLL 315 (415)
T ss_pred hcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhH
Confidence 4 4556677777777776666653 1222345577888888887 556777888888775331 1
Q ss_pred -hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHH---HHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 303 -SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV---EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 303 -~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~---~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
...++..++|.++...++.+...|...+.+|..+.++++.+.+ ...++|.+.+.++-++.+++..+.+++..+..
T Consensus 316 ykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 316 YKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1235678899999998888878999999999999999887643 36899999998888888999999998887654
No 77
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.7e-06 Score=79.81 Aligned_cols=95 Identities=22% Similarity=0.269 Sum_probs=58.4
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhc
Q 016814 44 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS 123 (382)
Q Consensus 44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~ 123 (382)
-++..+..+--.|.-+++.++ +++. -..+.|.+.++++.+++.||+.|+.|...+....+.- .+.+++...+++
T Consensus 115 DL~s~nq~vVglAL~alg~i~---s~Em-ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~e~f~~~~~~lL 188 (866)
T KOG1062|consen 115 DLNSSNQYVVGLALCALGNIC---SPEM-ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--VEHFVIAFRKLL 188 (866)
T ss_pred hccCCCeeehHHHHHHhhccC---CHHH-hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--HHHhhHHHHHHH
Confidence 334444444444444444433 2332 2456777777777777777777777777776654432 346677777777
Q ss_pred CCCchHHHHHHHHHHHhhccc
Q 016814 124 SDSSQHVRSALASVIMGMAPL 144 (382)
Q Consensus 124 ~d~~~~vr~~a~~~l~~l~~~ 144 (382)
.|.+..|-.+.+..+-.+++.
T Consensus 189 ~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 189 CEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred hhcCCceeeeHHHHHHHHHhc
Confidence 777777777776666666654
No 78
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.87 E-value=3.2e-07 Score=87.18 Aligned_cols=201 Identities=18% Similarity=0.223 Sum_probs=164.7
Q ss_pred cChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 016814 28 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 104 (382)
Q Consensus 28 ~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~ 104 (382)
+++.++.+.+-+-+...+.+++|.-|..+++.+..+.+.-+. ..+...+...+.-...|.+-.|-..++.+|..++.
T Consensus 245 l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~ 324 (815)
T KOG1820|consen 245 LPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK 324 (815)
T ss_pred CchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 344566667777788888999999999999999998876661 22223355555567789999999999999999999
Q ss_pred hhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 016814 105 ILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182 (382)
Q Consensus 105 ~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~ 182 (382)
.++.. .+...+.|.+.+.+.|....+|..+..++..++...+ ...+.+.+..++++.++..|..+...+.....
T Consensus 325 ~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 325 KLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred hcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 88765 4456788999999999999999999999999987433 46788999999999999999999999998887
Q ss_pred hhch----hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHH
Q 016814 183 VIGI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 232 (382)
Q Consensus 183 ~~~~----~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 232 (382)
.+++ ......+.|.+....+|.+..||.++.+.+..+...+|.+.+...+
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7762 2234788999999999999999999999999999999987765433
No 79
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.87 E-value=2.9e-07 Score=84.07 Aligned_cols=232 Identities=17% Similarity=0.277 Sum_probs=170.4
Q ss_pred CchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc-CC
Q 016814 126 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR 204 (382)
Q Consensus 126 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~-d~ 204 (382)
.++.=+....+.|..+...++.......++|.+.+.+.+.. ..-...-.+-.+.+..+...+...++|.+....+ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 34455667788888888888888888889988888774421 1111222223344444555666788888888877 55
Q ss_pred CchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh-cCcc
Q 016814 205 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPH 283 (382)
Q Consensus 205 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-~~~~ 283 (382)
+-+++..+++.+..+.+....+.+.+.++|++...++|.+..+++.+++.+..+++.+......+.++|.+.... ...+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 667888999999999999999999999999999999999999999999999999999887778888999988764 4556
Q ss_pred hHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh--HHHHHHhHHHHHHHhcCCC
Q 016814 284 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDP 360 (382)
Q Consensus 284 ~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~--~~~~~~~i~~~l~~l~~d~ 360 (382)
..++..++.|++.+++.+......++++|.+... +...+.+-....++...+..... .+...+.++|.+..+...+
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 8899999999999998887766666666665544 34457777777776655543322 2445567777776655443
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.86 E-value=3.3e-05 Score=76.26 Aligned_cols=339 Identities=16% Similarity=0.105 Sum_probs=194.8
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Q 016814 34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 113 (382)
Q Consensus 34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~ 113 (382)
.+..+..+...+..+...+|..|++++..+.+.=+.-.....+...+-..+.|++-.||++|++.+|.++-..+.- ..
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~--~~ 891 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL--IF 891 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH--HH
Confidence 3445566666778888999999999999998744333334456777777889999999999999999986544322 23
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh----------
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV---------- 183 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~---------- 183 (382)
+.-..+.+-+.|+...||.-+++.+..++...+.=.....+.--+...++|+...+..-+...+..+.=.
T Consensus 892 qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~ 971 (1692)
T KOG1020|consen 892 QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPA 971 (1692)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHH
Confidence 4556677778899999999999999999976653222334444444556777777777777666654211
Q ss_pred -----------------hchhhHhhhHHHHHHH----------------------------Hh------------cCCCc
Q 016814 184 -----------------IGIDLLSQSLLPAIVE----------------------------LA------------EDRHW 206 (382)
Q Consensus 184 -----------------~~~~~~~~~llp~l~~----------------------------~~------------~d~~~ 206 (382)
++.+.. +.++-.+.. ++ .++..
T Consensus 972 ~~~kI~~~~~vv~~~~d~~~~~~-eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~ 1050 (1692)
T KOG1020|consen 972 KARKISLEVDVVMSQVDLMNDWL-EQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEES 1050 (1692)
T ss_pred HHHhhHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccc
Confidence 000111 111111111 00 00111
Q ss_pred hHH-HHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHhC--hHHHHhhhHHHHHhh
Q 016814 207 RVR-LAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-----VYSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEM 278 (382)
Q Consensus 207 ~vr-~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~~~~~~~--~~~~~~~l~~~l~~~ 278 (382)
.+| .+.+..|..++. ..|..+.+..+-.+..+|... ...+-...+..+..+..... .+.|...+-..++.+
T Consensus 1051 ~~~~~~~lstL~~Fsk-irP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~ 1129 (1692)
T KOG1020|consen 1051 EVRLLAYLSTLFVFSK-IRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKR 1129 (1692)
T ss_pred hhHHHHHHHHHHHHHh-cCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 111 122222222222 122222222222333333322 22333344444444443332 244555566666666
Q ss_pred hcCcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHHhhc-------cCC----CccHHHHHHHHHHHHhhhhhH----
Q 016814 279 INNPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVINAS-------KDR----VPNIKFNVAKVLQSLIPIVDQ---- 342 (382)
Q Consensus 279 l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l-------~d~----~~~vR~~a~~~l~~i~~~~~~---- 342 (382)
+...+...-..+..|++.++...... .....++..+++.+ .+. +...=...+.++|.+..++.-
T Consensus 1130 i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~ 1209 (1692)
T KOG1020|consen 1130 IVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPS 1209 (1692)
T ss_pred HHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCcc
Confidence 66666677778888998888753221 12333333333322 122 212334566778888776531
Q ss_pred ----------HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 343 ----------SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 343 ----------~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
......++-.|.-+..+.+-++|..|..+++.+.
T Consensus 1210 ~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1210 NDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred CCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1234677777777788889999999999999775
No 81
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.83 E-value=7.6e-07 Score=70.38 Aligned_cols=112 Identities=21% Similarity=0.182 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 89 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~ 89 (382)
+|.||..++.+++.++...+. ..+..+|.+...+.|+++.||+.++..+..+... +--..+..++..+..++.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence 588999999999999998864 4566788899999999999999999999998753 2122234566888889999999
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcC
Q 016814 90 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 124 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~ 124 (382)
.||..|...+..+.....++.+.+.+.+.+..+-+
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 99999999999998876666666555555555443
No 82
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.82 E-value=6e-07 Score=82.11 Aligned_cols=232 Identities=15% Similarity=0.223 Sum_probs=176.1
Q ss_pred cHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhc-CCC
Q 016814 88 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEF 166 (382)
Q Consensus 88 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~ 166 (382)
++.-+...++.|..+...++.....++++|.+.+.+.+.. .--...-.+-.|++......+...++|.+...++ ...
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence 4445666788899999999998888899999998774432 1112223333445555555567788888888877 446
Q ss_pred hHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH-hccchh
Q 016814 167 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVY 245 (382)
Q Consensus 167 ~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~ 245 (382)
..++.-.++.+..+.+...++.+.+.++|.+...+++.+..++..+++.++.+++.++.....+.++|.+..+ ++..+.
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 7788888899999999999999989999999999999999999999999999999999888888999999875 456789
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc--cccChhhhhhhhHHHHHhhccCCC
Q 016814 246 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA--PVMGSEITCSRLLPVVINASKDRV 322 (382)
Q Consensus 246 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~--~~~~~~~~~~~~l~~l~~~l~d~~ 322 (382)
.|+..++-+++.+++.+..-...+.+.|.+.. .+..++.+-.....+...+. ...|.+...++++|.++.+...+.
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 99999999999999887665555656555544 44455566566666555543 233346678899999888876654
No 83
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.79 E-value=2.2e-08 Score=69.36 Aligned_cols=85 Identities=29% Similarity=0.406 Sum_probs=53.3
Q ss_pred hhhhhhc-cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhH
Q 016814 39 PVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 117 (382)
Q Consensus 39 ~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~ 117 (382)
|.+.+.+ +|+++.+|..++..++.+. ....+|.+.++++|+++.||.+++.+|+.+.. +..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 3444444 6777777777777777332 13467777777777777777777777776532 34556
Q ss_pred hhhhhcCC-CchHHHHHHHHHHH
Q 016814 118 CVKELSSD-SSQHVRSALASVIM 139 (382)
Q Consensus 118 ~l~~~~~d-~~~~vr~~a~~~l~ 139 (382)
.+.+++.| ++..||..++.+|+
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 66665554 34456777776654
No 84
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.9e-05 Score=69.16 Aligned_cols=256 Identities=16% Similarity=0.116 Sum_probs=159.7
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhH--HHhhH-HHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHh
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLL-PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 190 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~-~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~ 190 (382)
.++-.+-.-..|++..+|..++..++..+...+.+.. .+.++ -++..+..+.+.+|.-.+++.+..+.+....+.+.
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 3444444556789999999999999999987664432 23444 45555666677999999999999888776665554
Q ss_pred hhHHHH---HHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHH---HHhccchhHHHHHHHHHHHHHHHH
Q 016814 191 QSLLPA---IVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEE 261 (382)
Q Consensus 191 ~~llp~---l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~ 261 (382)
..+++. ++++..+.+...|.++...++.++...| ++.|.+++...+. --++|+++.|-.+. +.....
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC----r~~~~~ 413 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC----RSELRT 413 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH----HHHHHh
Confidence 444444 5667889999999999999999987665 3455544443222 23678888774432 223333
Q ss_pred hChHHHHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814 262 FGPEWAMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 262 ~~~~~~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 340 (382)
+++...++.+.-.+-+.+ |... +.+.-.-.++.++...... ..-........+++..-+.+|..+...-+....+.
T Consensus 414 c~p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~d--~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l 490 (533)
T KOG2032|consen 414 CYPNLVRKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHPD--ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSL 490 (533)
T ss_pred cCchhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCHH--HHHHHHHhchhheecchHHHHHHHHHHHHHHHHHh
Confidence 344333333333332222 2221 2222222223333322111 11222233344566666789988888877777666
Q ss_pred hHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 341 DQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 341 ~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
..+. ....+...+..+-.||-++|+..|.+|++.+.
T Consensus 491 ~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 491 VRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 5543 23567777777889999999999999998764
No 85
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.77 E-value=5.1e-08 Score=67.55 Aligned_cols=86 Identities=28% Similarity=0.405 Sum_probs=60.7
Q ss_pred HHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhH
Q 016814 77 VPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 155 (382)
Q Consensus 77 l~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 155 (382)
+|.+++.+ +|+++.||..++.+|+.+. . ...+|.+.++++|+++.||..++.+++.+. .+..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----D----PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----H----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----C----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHH
Confidence 45666666 7788888888888887442 2 245777777778888888888888888773 24566
Q ss_pred HHHHHhhcC-CChHHHHHHHHhhH
Q 016814 156 PIFLSLLKD-EFPDVRLNIISKLD 178 (382)
Q Consensus 156 ~~l~~~l~d-~~~~vr~~~~~~l~ 178 (382)
+.+.+++.+ ++..||..++.+|+
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhcC
Confidence 777776655 34566777777764
No 86
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.75 E-value=7.1e-06 Score=74.62 Aligned_cols=287 Identities=14% Similarity=0.120 Sum_probs=155.8
Q ss_pred CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc
Q 016814 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE 88 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~ 88 (382)
.++.+++.|++.|....++++. ..+.-+..+..+++|.+..||..|++.|..+|+.-+ .....+...+.+++..++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHHHHHHhccc
Confidence 3578899999999999998864 456778888999999999999999999999997532 233568899999999888
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh------HhHHHhhHHHHHHhh
Q 016814 89 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------DATIEQLLPIFLSLL 162 (382)
Q Consensus 89 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~l 162 (382)
+..+.++-++|..+.+.-+.. ....++..+..- ...+..+|+.+++.+..-...++. +...+.++..+.+.+
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k~-tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL 187 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPKG-TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL 187 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence 888888888888876643332 222333332211 234567999999887543332321 334567778888888
Q ss_pred cCCChHHHHHHHHhhHHhhhh--hchhhHhhhHHHHHHHHhc-CC-----CchHHHHHHHHhHHHHhh----hchhhhHH
Q 016814 163 KDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAE-DR-----HWRVRLAIIEYIPLLASQ----LGVGFFDD 230 (382)
Q Consensus 163 ~d~~~~vr~~~~~~l~~~~~~--~~~~~~~~~llp~l~~~~~-d~-----~~~vr~~~~~~l~~l~~~----~~~~~~~~ 230 (382)
.|-..+--..++..|..+-.+ ..+..-.+.+++.+.+... |. +...-..++.++..-... .....|..
T Consensus 188 ~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~ 267 (556)
T PF05918_consen 188 QDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVN 267 (556)
T ss_dssp TT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHH
T ss_pred HhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHH
Confidence 884432222223333222221 1111122566776665431 11 122222333433332222 22233333
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC--------c--chHHHHHHHHHHHHhccc
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--------P--HYLYRMTILRAISLLAPV 300 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~--------~--~~~~r~~a~~~l~~l~~~ 300 (382)
.+..-++.-+.+-....|...++.++.++...+... ...++|.+.+.|.. + +...-++.+.++..++..
T Consensus 268 y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 268 YMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp HHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence 333333334444466778888999999998888644 34455555554421 1 245566777777777655
Q ss_pred cC
Q 016814 301 MG 302 (382)
Q Consensus 301 ~~ 302 (382)
..
T Consensus 347 ~p 348 (556)
T PF05918_consen 347 SP 348 (556)
T ss_dssp -T
T ss_pred Cc
Confidence 44
No 87
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.74 E-value=1.8e-06 Score=68.28 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=82.2
Q ss_pred ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchh
Q 016814 166 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY 245 (382)
Q Consensus 166 ~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 245 (382)
++.+|.+++.+++.++..++ .+.+..+|.+...+.|+++.||..++..+..+... +.-.+...++..+...+.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence 46788899999988877664 33477888888889999999999999988888753 3333345666667778899999
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC
Q 016814 246 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 281 (382)
Q Consensus 246 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~ 281 (382)
+||..|...+..+....+++.+.. .+|.++..+++
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~-~~~e~i~~l~~ 112 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYN-NFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHhC
Confidence 999999999999888755554444 44444444443
No 88
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.8e-05 Score=71.51 Aligned_cols=355 Identities=14% Similarity=0.114 Sum_probs=197.2
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccc---hHHHHHH
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD---LVPAYVR 82 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~---ll~~l~~ 82 (382)
+...+..++-.|+.-+..+.- ..+.+.+.++.++.-.+...+..+++...-.+.-+-+.-++....++ +...+-+
T Consensus 29 Lek~~~~~KIeamK~ii~~ml--nGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~Rk 106 (948)
T KOG1058|consen 29 LEKGDDEVKIEAMKKIIALML--NGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRK 106 (948)
T ss_pred HhcCChHHHHHHHHHHHHHHH--cCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhh
Confidence 455677788888776654433 34455555666666666777777777666655533333232333333 3344556
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh-
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL- 161 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~- 161 (382)
-+++|+.-||-..++.+..+ ......+.++|.+...+++...+||+.|+-++..+-+... ...++.-.++.++
T Consensus 107 DLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeLi~~fL 180 (948)
T KOG1058|consen 107 DLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPELIESFL 180 (948)
T ss_pred hccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHHHHHHH
Confidence 77889999998887776654 3334556789999999999999999999988888765421 1222333334443
Q ss_pred hcCCChHHHHHHHHhhHHhhhh-----hch---------hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh
Q 016814 162 LKDEFPDVRLNIISKLDQVNQV-----IGI---------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 227 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~~-----~~~---------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 227 (382)
..+.++..++++.-.+...-.. ++. +...-.++..+.+.+. .++..+...++++-.+...-++..
T Consensus 181 ~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~-~~p~~~~~~i~~i~~lL~stssaV 259 (948)
T KOG1058|consen 181 LTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL-ANPAEKARYIRCIYNLLSSTSSAV 259 (948)
T ss_pred HhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh-cCHHHhhHHHHHHHHHHhcCCchh
Confidence 4556777777766554432111 100 0111122333333222 344444444444444432222111
Q ss_pred hH------------HH-H---HHHHHHH-hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHH
Q 016814 228 FD------------DK-L---GALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI 290 (382)
Q Consensus 228 ~~------------~~-l---~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a 290 (382)
.. +. + ...+..+ .+.++-+++.....-+..+.. +.+...+.++--++..+..++..+|.-+
T Consensus 260 ~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~dldvr~Kt 337 (948)
T KOG1058|consen 260 IFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSPDLDVRSKT 337 (948)
T ss_pred hhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 00 00 0 0011111 122233333333333333331 1233344455556677888999999999
Q ss_pred HHHHHHhccccChhhhhhhhHHHHHhh---ccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhH
Q 016814 291 LRAISLLAPVMGSEITCSRLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367 (382)
Q Consensus 291 ~~~l~~l~~~~~~~~~~~~~l~~l~~~---l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~ 367 (382)
+.....++..-..+.....+-..+.+- -+|.+-..|..-++++...+..+. .....++|.+...+.|.++.--..
T Consensus 338 ldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~ 415 (948)
T KOG1058|consen 338 LDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASD 415 (948)
T ss_pred HHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHH
Confidence 999988887666553333332233322 234455679999999988877665 456788888888888877654333
Q ss_pred HHHHHH
Q 016814 368 ATQAIQ 373 (382)
Q Consensus 368 a~~al~ 373 (382)
....+.
T Consensus 416 vl~Fvr 421 (948)
T KOG1058|consen 416 VLMFVR 421 (948)
T ss_pred HHHHHH
Confidence 333333
No 89
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.73 E-value=5.9e-06 Score=66.52 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=73.2
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCC--CccHHHHHHHHHHHHhhhhhHHHHHH
Q 016814 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSMVEK 347 (382)
Q Consensus 270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~~~~~~ 347 (382)
.-+..+.+.+.+++.-.|..++.+++++-. +.-+|.+.+.|.|. ++.||--|+++|+.++. .
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e 250 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------E 250 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------H
Confidence 356677788888899999999999999864 23456666666554 56799999999999874 5
Q ss_pred hHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 348 TIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 348 ~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
..++.|.+.++|+++-||..+.-|+...-
T Consensus 251 ~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 251 DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 67888999999999999999998887553
No 90
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.72 E-value=1.9e-06 Score=71.37 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=126.7
Q ss_pred hhhhcc-CCCHHHHHHHHHHHHHHHHHhCCcc-cc-cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhH
Q 016814 41 IVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 117 (382)
Q Consensus 41 l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~-~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~ 117 (382)
+..+++ .+++.+++.+.-.+++.+..-.... .. ...++.+..+++++++.+|..|+.++.+++.........+..++
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~ 96 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP 96 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 344444 6788999999999998764332222 11 24799999999999999999999999988655433333334455
Q ss_pred hhhhh-cC-CCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh--chhhHhhhH
Q 016814 118 CVKEL-SS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQSL 193 (382)
Q Consensus 118 ~l~~~-~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~--~~~~~~~~l 193 (382)
.+.+. .. ..+..++.++.+.|..+.-.-........-+|.+..++...+..+|..+++.+..++..- ..+-+....
T Consensus 97 ~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~ 176 (254)
T PF04826_consen 97 QVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQV 176 (254)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccc
Confidence 55543 33 246688999999999997544434444456777788888889999999999888876542 233344456
Q ss_pred HHHHHHHhcCC-CchHHHHHHHHhHHHHhhhch
Q 016814 194 LPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV 225 (382)
Q Consensus 194 lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~ 225 (382)
++.+..++..+ +..+...++..+..+...+.+
T Consensus 177 ~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 177 LSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred hhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 66777777654 456666777777777665544
No 91
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=5.6e-05 Score=69.12 Aligned_cols=294 Identities=15% Similarity=0.135 Sum_probs=181.7
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 89 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~ 89 (382)
+|.--..|+.+++.++..--.+.+.+++-.++.. .+..+.||+.++-++-.+-+..++-.-..+-...++.+++|.+-
T Consensus 124 n~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~ 201 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHM 201 (938)
T ss_pred CcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCcccc
Confidence 3444456677776666543333333334332222 46667999999999999888765543334567778889999998
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhh---hc-------------CCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814 90 EVRIAAAGKVTKFCRILNPELAIQHILPCVKE---LS-------------SDSSQHVRSALASVIMGMAPLLGKDATIEQ 153 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~---~~-------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 153 (382)
.|-.++...+..+++..+++.- ..+.+.+.+ .+ .=+.|+....+++.|..+- ...+......
T Consensus 202 gv~ta~~sLi~~lvk~~p~~yk-~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p-~~~D~~~r~~ 279 (938)
T KOG1077|consen 202 GVVTAATSLIEALVKKNPESYK-TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP-TPEDPSTRAR 279 (938)
T ss_pred ceeeehHHHHHHHHHcCCHHHh-hhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC-CCCCchHHHH
Confidence 8988998888888888776621 111111111 11 1256777777777777662 2222223344
Q ss_pred hHHHHHHhhcCCC-----hHHHH-----HHHHhhHHhhhhhch-hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814 154 LLPIFLSLLKDEF-----PDVRL-----NIISKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 222 (382)
Q Consensus 154 l~~~l~~~l~d~~-----~~vr~-----~~~~~l~~~~~~~~~-~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 222 (382)
+...+..+++-.+ ..|.. +++-..-.++-.+.+ +.....-...+.+++.+....+|.-+++.+..++..
T Consensus 280 l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss 359 (938)
T KOG1077|consen 280 LNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS 359 (938)
T ss_pred HHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc
Confidence 5555555543211 22222 222111222222222 233355566677788899999999999999988865
Q ss_pred hc-hhhhHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814 223 LG-VGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 300 (382)
Q Consensus 223 ~~-~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 300 (382)
-. .+... +-...+...|+ +++..||..|+..+-.++..-.. +.++..+++.+..-++.+|+-.+.-+..+++.
T Consensus 360 ~~s~davK-~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Na----k~IV~elLqYL~tAd~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 360 EFSIDAVK-KHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA----KQIVAELLQYLETADYSIREEIVLKVAILAEK 434 (938)
T ss_pred cchHHHHH-HHHHHHHHHhccccchHHHHHHHHHHHHHhchhhH----HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 32 23333 33677777787 89999999999999888864322 45667777777778888888877777777777
Q ss_pred cChh--hhhhhhHH
Q 016814 301 MGSE--ITCSRLLP 312 (382)
Q Consensus 301 ~~~~--~~~~~~l~ 312 (382)
+..+ +|...++.
T Consensus 435 yAtDy~WyVdviLq 448 (938)
T KOG1077|consen 435 YATDYSWYVDVILQ 448 (938)
T ss_pred hcCCcchhHHHHHH
Confidence 6654 44444443
No 92
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.68 E-value=2.5e-05 Score=73.85 Aligned_cols=344 Identities=14% Similarity=0.155 Sum_probs=200.2
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhC--CcccccchH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLV 77 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~ll 77 (382)
|..+++.++..+...++.++..++-.... .-....++|.+.+++..++..++..+++.|.+++..-. .......++
T Consensus 295 Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlI 374 (708)
T PF05804_consen 295 LVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLI 374 (708)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCc
Confidence 34556677788888888888888754322 23355688888999998999999999999999884222 233345689
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhc-CCCchHHHHHHHHHHHhhccccChHh-HH-H
Q 016814 78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA-TI-E 152 (382)
Q Consensus 78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~-~~-~ 152 (382)
|.+..++.|++ .|..++..|..++..-... ......+|.+.+++ ..+++.+...++..+..++..-.... .. .
T Consensus 375 PkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g 452 (708)
T PF05804_consen 375 PKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEG 452 (708)
T ss_pred HHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhc
Confidence 99999998764 4566777787775421111 11234667777654 44556666555555555553222111 11 1
Q ss_pred hhHHHHH-HhhcCCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHHHHHhcC-CCchHHHHHHHHhHHHHhhh----c
Q 016814 153 QLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQL----G 224 (382)
Q Consensus 153 ~l~~~l~-~~l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~----~ 224 (382)
..++.+. ..++..++-+ ++.+..++..-|+ ..+.+ ++..+...+.. +++. ..+++++.++..- +
T Consensus 453 ~gL~~L~~ra~~~~D~lL----lKlIRNiS~h~~~~k~~f~~-~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld 524 (708)
T PF05804_consen 453 NGLQSLMKRALKTRDPLL----LKLIRNISQHDGPLKELFVD-FIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLD 524 (708)
T ss_pred CcHHHHHHHHHhcccHHH----HHHHHHHHhcCchHHHHHHH-HHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcC
Confidence 2233333 3344333221 2222333322221 12222 23333333433 3444 4445555544322 1
Q ss_pred hh-hhH-HHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHH
Q 016814 225 VG-FFD-DKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPH--YLYRMTILRAISL 296 (382)
Q Consensus 225 ~~-~~~-~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~ 296 (382)
-. .+. ..++|.+.+.+... ...+...++..+|.++..-.. -.....+++.+.++++..+ ...-...+.++.+
T Consensus 525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 11 122 25888888888653 346778888888877642111 1124567888888887654 4455566677777
Q ss_pred hccccCh-hh--hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh-------H---HHHHHhHHHHHHH
Q 016814 297 LAPVMGS-EI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD-------Q---SMVEKTIRPCLVE 355 (382)
Q Consensus 297 l~~~~~~-~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~-------~---~~~~~~i~~~l~~ 355 (382)
+..+-.. +. ....+...++..++|+|+.+|..|-.+|.-+++.-. . ..+..+++..+..
T Consensus 605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~ 676 (708)
T PF05804_consen 605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVES 676 (708)
T ss_pred HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 6644221 11 225677789999999999999999999988875422 1 1344677777754
No 93
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.67 E-value=2.5e-06 Score=68.61 Aligned_cols=220 Identities=17% Similarity=0.169 Sum_probs=133.3
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCC--CchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD--SSQHVRSALASVIMGMAPLLGKDATIEQL 154 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 154 (382)
+..+.+...|.+...+...+.++++... ..-+|.+...+.| ..|.||..+.++|+.+.. +..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~ 101 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PES 101 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhh
Confidence 4444444455444445555555554322 2345666665554 346677777777777751 345
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhh------H---------hhhHHHHHHHHhcCCCc--hHHHHHHHHhH
Q 016814 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL------L---------SQSLLPAIVELAEDRHW--RVRLAIIEYIP 217 (382)
Q Consensus 155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~------~---------~~~llp~l~~~~~d~~~--~vr~~~~~~l~ 217 (382)
.+++.++.+|+...||..+.-++.++-..-+.+. + ...=++.+...+.|.+. --|..++-.+.
T Consensus 102 ~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LR 181 (289)
T KOG0567|consen 102 LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLR 181 (289)
T ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhh
Confidence 6677777777777777776666666532211111 0 00112223333333221 11222222222
Q ss_pred HHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc--chHHHHHHHHHHH
Q 016814 218 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP--HYLYRMTILRAIS 295 (382)
Q Consensus 218 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~ 295 (382)
.+ |. +.-+-.+...+.+++.-.|..++-.+|.+-+. .-+|.+.+.+.|. ++-+|.-|+.+++
T Consensus 182 n~----g~----EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~--------~ai~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 182 NI----GT----EEAINALIDGLADDSALFRHEVAFVFGQLQSP--------AAIPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred cc----Cc----HHHHHHHHHhcccchHHHHHHHHHHHhhccch--------hhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 21 11 22344566777888888999999998887653 3677777777664 5889999999999
Q ss_pred HhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814 296 LLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 336 (382)
Q Consensus 296 ~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i 336 (382)
.++. +..++.+..+++|+.+-||.+|.-+|...
T Consensus 246 aIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 246 AIAD--------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9873 46677888999999999999999998755
No 94
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.6e-05 Score=69.63 Aligned_cols=247 Identities=16% Similarity=0.103 Sum_probs=147.8
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChhh---hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH--
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY-- 80 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l-- 80 (382)
..|++..+|..|++.++..+...+.+. ....+--++..+..+.+..|-..++++|..+.+.........++++.-
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 468888999999999999999855422 122244456667778889999999999999998888776666665554
Q ss_pred -HHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhH---hhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814 81 -VRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILP---CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 153 (382)
Q Consensus 81 -~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~---~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 153 (382)
..+..|.++.+|.++...++.+++..+.. .+.+.+.. .+.-.++|+++.|-.++-..+....+.+.. +.
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~r----ke 422 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVR----KE 422 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHH----HH
Confidence 45778899999999999999999887643 22222222 222346899998755443333333333332 23
Q ss_pred hHHHHHHhhcCCChHHHHHHH-HhhHHhhhhhchhhHhhhHHHHHHHHhcCCCc-hHHHHHHHHhHHHHhhhch----hh
Q 016814 154 LLPIFLSLLKDEFPDVRLNII-SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGV----GF 227 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~-~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~----~~ 227 (382)
+..++.+.+ |.... |.... ..++.=...+-++.. ..+......+++ .+| .+|.++...-..+..++.+ ..
T Consensus 423 ~~~~~q~~l-d~~~~-~~q~Fyn~~c~~L~~i~~d~l-~~~~t~~~~~f~-sswe~vr~aavl~t~~~vd~l~~~~c~~~ 498 (533)
T KOG2032|consen 423 LYHLFQESL-DTDMA-RFQAFYNQWCIQLNHIHPDIL-MLLLTEDQHIFS-SSWEQVREAAVLKTTRSVDSLVRAACSSA 498 (533)
T ss_pred HHHHHhhhh-HHhHH-HHHHHHHHHHHHHhhhCHHHH-HHHHHhchhhee-cchHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 333333333 22221 11111 111000000111100 111111122233 345 7777777666655544432 23
Q ss_pred hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814 228 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260 (382)
Q Consensus 228 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 260 (382)
...++...+..+..|+-++++..+.++++.+..
T Consensus 499 d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 499 DGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 345677788888899999999999998887653
No 95
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.65 E-value=2.3e-06 Score=74.24 Aligned_cols=191 Identities=14% Similarity=0.119 Sum_probs=124.7
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCCccc--ccc
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPT--RMD 75 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ 75 (382)
+.++-+++...-|..|+.-|..+...-+- ++....++-.+.+.+.| .+...|+.+.+.|..+++.-+.... ...
T Consensus 292 l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ 371 (516)
T KOG2956|consen 292 LKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEI 371 (516)
T ss_pred HHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHH
Confidence 44555666667778888766665553211 23334566677777777 7888899999999998876654322 223
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhH---HH
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IE 152 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~ 152 (382)
.+-.+++...|+...|-..|.+.....+....+......+.|.+.. .+...-..+++.+..+.+.+..+.. .+
T Consensus 372 ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 372 AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 5666677777877766556666655555555555444455566655 3344445666777777777776542 36
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHH
Q 016814 153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 200 (382)
Q Consensus 153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~ 200 (382)
.+.|.+.+.....+..||+.++-+|-.+...+|. +.+.|++.++
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~----~~mePhL~~L 491 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM----EEMEPHLEQL 491 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH----HhhhhHhhhc
Confidence 7778888888888888888888888888887775 3445555544
No 96
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.65 E-value=5.3e-06 Score=68.79 Aligned_cols=205 Identities=12% Similarity=0.071 Sum_probs=114.4
Q ss_pred CCChHHHHHHHHhhHHhhhhhchhhHhh--hHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHH-HHh
Q 016814 164 DEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM-QWL 240 (382)
Q Consensus 164 d~~~~vr~~~~~~l~~~~~~~~~~~~~~--~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~-~~l 240 (382)
..+|.+++.+..+++....+-....+.. ..++.+..++.++++.+|..++.++..++.........+..++.+. ...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 3456666666666666543322211111 2466667777777777777777777666543322111112222222 222
Q ss_pred cc-chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC--hhhhhhhhHHHHHhh
Q 016814 241 QD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEITCSRLLPVVINA 317 (382)
Q Consensus 241 ~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~ 317 (382)
.+ .+.+++.++++.|..+.-.-.........+|.++.++...+..+|..++.++..++.+-. .+....+.++.++.+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~L 183 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSL 183 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHH
Confidence 22 255667777777776653222222333456666777777777777777777777765433 223445566666666
Q ss_pred ccCC-CccHHHHHHHHHHHHhhhhhHH------------H------HHHhHHHHHHHhcCCCCccHHhHH
Q 016814 318 SKDR-VPNIKFNVAKVLQSLIPIVDQS------------M------VEKTIRPCLVELTEDPDVDVRFFA 368 (382)
Q Consensus 318 l~d~-~~~vR~~a~~~l~~i~~~~~~~------------~------~~~~i~~~l~~l~~d~~~~vr~~a 368 (382)
+... ..++-..++..+..+...+..+ . -...+-..|..+...+|++||..+
T Consensus 184 f~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 184 FNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 6554 4556667777777776554432 0 013566667777888999998753
No 97
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.65 E-value=1.7e-07 Score=69.16 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=79.7
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--
Q 016814 35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-- 109 (382)
Q Consensus 35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-- 109 (382)
..+++.+.+.+.+.++.+|..++.+++.++...+. ......++|.+.++++|+++.+|..++.+|++++...+..
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 34677777778888889999999998888864222 2223467888888888888888888888888887654321
Q ss_pred -HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc
Q 016814 110 -LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 142 (382)
Q Consensus 110 -~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~ 142 (382)
.....+++.+.+.+++.+..+|..++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 223457888888888888888888888887765
No 98
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=4e-05 Score=70.89 Aligned_cols=287 Identities=15% Similarity=0.127 Sum_probs=176.9
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814 74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 153 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 153 (382)
..+.|++-.++.+....|-..++.++..+-...+.+. .-.+..+..+++.+....|-++.+.|..++...+... ..
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~ 319 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TV 319 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cc
Confidence 4578888888888888888888888777654443331 1245667778889999999999999999886554321 11
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 233 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 233 (382)
.-+-+..+++|.+-.+-.-++..+-+-+...+ . +.++..+..+..|=+..-+....+.+..++..++.. ...++
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~s---v-~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m 393 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESS---V-DRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMM 393 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhH---H-HHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH--HHHHH
Confidence 22335566777665554444444333322222 2 444444444333333333344445555555544433 23466
Q ss_pred HHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHH
Q 016814 234 ALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP 312 (382)
Q Consensus 234 ~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~ 312 (382)
+.+.++|.+ ...+-+.+.++++..+++..... .+.-+..+.+++.|..+ +.-+...+..++.-.+....-.+.+-
T Consensus 394 ~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce~--~~i~~rILhlLG~EgP~a~~Pskyir 469 (865)
T KOG1078|consen 394 NFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCEF--TQIAVRILHLLGKEGPKAPNPSKYIR 469 (865)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhccc--hHHHHHHHHHHhccCCCCCCcchhhH
Confidence 667776654 45677888888888888754332 34466677777776543 34566666666654442211122222
Q ss_pred HHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 313 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 313 ~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
.+.+...=++..||.+|..++.+++ .+.......+.-.+..++.|+|.+||..|.-++..+-
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 2333333356889999999999998 3333445678888888999999999999988887664
No 99
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.00015 Score=60.53 Aligned_cols=319 Identities=13% Similarity=0.152 Sum_probs=190.6
Q ss_pred HHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc-------ccchHHHHHHhcCCCcH
Q 016814 17 AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-------RMDLVPAYVRLLRDNEA 89 (382)
Q Consensus 17 a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-------~~~ll~~l~~~l~d~~~ 89 (382)
.+.++..+-+...+....+.++|.++..+..++..|+..+|+.++-+.+....+.. ..+++|.++.+...++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 66677777776666677788999999999888999999999999999988775432 34689999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCHH--HHHHhhhHhh--hhhcCCCchHHHHHHHHHHHhhccccC---hHhHHHhhHHHHHHhh
Q 016814 90 EVRIAAAGKVTKFCRILNPE--LAIQHILPCV--KELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLL 162 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l--~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l 162 (382)
.|-++|.+.+..++..-..- .+.++++..+ ..+..-.+..+|--..+.+..+....+ .+.....++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 99999999999986532110 1111111111 112222344555555555555544332 2334466777666655
Q ss_pred cC-CChHHHHHHHHhhHHhhhh-hchhhHh-hhHHHHHHHHhc--CCCchHHHHHHHHhHHHHhhhchhhhH----HHH-
Q 016814 163 KD-EFPDVRLNIISKLDQVNQV-IGIDLLS-QSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFD----DKL- 232 (382)
Q Consensus 163 ~d-~~~~vr~~~~~~l~~~~~~-~~~~~~~-~~llp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l- 232 (382)
+. ++.-|+.+++.....+... .|.+.+. +.++..+...+. |.++--+..++..++ +.+|.+... +.+
T Consensus 223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfg---kffgkeaimdvseeaic 299 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFG---KFFGKEAIMDVSEEAIC 299 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHH---HHhcchHHhhcCHHHHH
Confidence 55 7788899998888777654 2332221 345566655542 444433333333333 333332211 122
Q ss_pred ------HHHHHHHhccchhHHHHHHHHHHHHHHHHhChH-HHHhhhH---HHHHhhhcCcc-hHHHHHHHHHHHHhcccc
Q 016814 233 ------GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHIT---PQVLEMINNPH-YLYRMTILRAISLLAPVM 301 (382)
Q Consensus 233 ------~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~---~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~ 301 (382)
+.-...+....++....+|+.++|.+.++.... ...+.-- ..+.....|.+ ..-.++++.++..++...
T Consensus 300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 222234455677888999999999988765432 2221111 12222223333 334456667776665322
Q ss_pred C--hhh--------------h-----hhhh--HHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 302 G--SEI--------------T-----CSRL--LPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 302 ~--~~~--------------~-----~~~~--l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
. ++. | ..++ +..++..+..+.+++|.++.+++..++.
T Consensus 380 rlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 380 RLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred cCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 1 110 0 1122 2346677888899999999999998875
No 100
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00065 Score=64.85 Aligned_cols=353 Identities=14% Similarity=0.103 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHhccChhhhhhhhhhhhhhhc--------cCCCHHHHHHHHHHHHHHHHHhCCc-cccc----chHHHHH
Q 016814 15 LLAVEGCAALGKLLEPQDCVAHILPVIVNFS--------QDKSWRVRYMVANQLYELCEAVGPE-PTRM----DLVPAYV 81 (382)
Q Consensus 15 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~--------~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~----~ll~~l~ 81 (382)
.+|...+..+++.=++ +..+.+++++.+.+ ..++++-+..|.+.++.+++.+.+. .+++ .+.+.++
T Consensus 390 ~Aa~~~l~~~~~KR~k-e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGK-ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred HHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 4566666666665444 33444555555543 2457788899999999999888763 3222 3666677
Q ss_pred HhcCCCcHHHHHHHHHHHHHHH-HhhCHHHHHHhhhHhhhhhcC-CCchHHHHHHHHHHHhhccccCh--HhHHHhhHHH
Q 016814 82 RLLRDNEAEVRIAAAGKVTKFC-RILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGK--DATIEQLLPI 157 (382)
Q Consensus 82 ~~l~d~~~~VR~~a~~~l~~l~-~~~~~~~~~~~il~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~ 157 (382)
..++++....|..|++.++.++ ..+........++....+++. |.+-.||..++-++..+...... +...+.+-|.
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 7789999999999999999998 556666666677777777776 88889999999999998765442 2233344444
Q ss_pred HHH---hhcCCChHHHHHHHH-hhHHhhhhhchh--hHhhhHHHHHHHHhcC---CCc---hHHHHH---HHHhHHHHhh
Q 016814 158 FLS---LLKDEFPDVRLNIIS-KLDQVNQVIGID--LLSQSLLPAIVELAED---RHW---RVRLAI---IEYIPLLASQ 222 (382)
Q Consensus 158 l~~---~l~d~~~~vr~~~~~-~l~~~~~~~~~~--~~~~~llp~l~~~~~d---~~~---~vr~~~---~~~l~~l~~~ 222 (382)
+.+ +.++-+-+.-..+++ -++.+.+.+.+- .+.+++...+.+++.+ .+. .-..++ ++.+..+...
T Consensus 549 mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s 628 (1010)
T KOG1991|consen 549 MQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLS 628 (1010)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 444 444433333333332 234444443321 2225555566666542 111 112233 3344444444
Q ss_pred hc--hhh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH---hChHHHHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 016814 223 LG--VGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE---FGPEWAMQHITPQVLEMINNPHYLYRMTILRAI 294 (382)
Q Consensus 223 ~~--~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l 294 (382)
+. ++. ..+.++|++...++..-.++-+.+...+..+.-. .+++ +=.+++.+.+.+.+.....=....-++
T Consensus 629 ~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~--mW~ll~li~e~~~~~~~dyf~d~~~~l 706 (1010)
T KOG1991|consen 629 LENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPI--MWGLLELILEVFQDDGIDYFTDMMPAL 706 (1010)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHH--HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 43 222 3356778887888776666666665555444332 2222 224777777777776655445555666
Q ss_pred HHhccccChh-----hhhhhhHHHHHhhccCCC--ccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHh----cC--CCC
Q 016814 295 SLLAPVMGSE-----ITCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL----TE--DPD 361 (382)
Q Consensus 295 ~~l~~~~~~~-----~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l----~~--d~~ 361 (382)
..+...-..+ .+.+.++..+-+.+.+++ ..=+..|++.+..+...++. ..++.+|.+.++ +. +.+
T Consensus 707 ~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg--~~dq~iplf~~~a~~~l~~~~e~ 784 (1010)
T KOG1991|consen 707 HNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG--LLDQYIPLFLELALSRLTREVET 784 (1010)
T ss_pred hhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC--cHhhHhHHHHHHHHHHHhccccc
Confidence 6554332222 344556666777777643 33566789999999888776 223344544443 22 355
Q ss_pred ccHHhHHHHHH
Q 016814 362 VDVRFFATQAI 372 (382)
Q Consensus 362 ~~vr~~a~~al 372 (382)
...|..+.+.+
T Consensus 785 s~~~~~~leVv 795 (1010)
T KOG1991|consen 785 SELRVMLLEVV 795 (1010)
T ss_pred hHHHHHHHHHH
Confidence 56676665544
No 101
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.59 E-value=5.8e-07 Score=66.26 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC---hHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--h
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--I 305 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~ 305 (382)
.+++.+...+.+.++++|..++.+++.++.... .......++|.+.+.+.++++.+|..++.+++.++...+.. .
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 356667777777778888888888887775321 12233367778888888877888888888888887654321 1
Q ss_pred -hhhhhHHHHHhhccCCCccHHHHHHHHHHHHh
Q 016814 306 -TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 337 (382)
Q Consensus 306 -~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 337 (382)
....+++.+...+.+.+..+|..++.+|..+.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22346777777777777778877777777654
No 102
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=0.00024 Score=59.33 Aligned_cols=320 Identities=15% Similarity=0.123 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-------HHHHhhhHhhhhhcCCC
Q 016814 54 YMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LAIQHILPCVKELSSDS 126 (382)
Q Consensus 54 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-------~~~~~il~~l~~~~~d~ 126 (382)
...+.++..+-+..........+.|.+...+..++..|+.-+++.++.+.+.++.. .+...++|.+..++..+
T Consensus 61 tlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred hhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 34777888887766665556678999999999999999999999999999988744 23567899999999999
Q ss_pred chHHHHHHHHHHHhhccccCh-H-hHHHhhHHH--HHHhhcCCChHHHHHHHHhhHHhhhhhchhhH----hhhHHHHHH
Q 016814 127 SQHVRSALASVIMGMAPLLGK-D-ATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV 198 (382)
Q Consensus 127 ~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~--l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~----~~~llp~l~ 198 (382)
+..|-.++.+.+..++..-.. + .+...+..- +.++....+.-+|..+...+-.+.+. +++.. ...++..+.
T Consensus 141 ddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-SpesaneckkSGLldlLe 219 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLE 219 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHH
Confidence 999999999999988742110 0 011111111 11222223445555555555554432 22221 123444443
Q ss_pred -HHhcCCCchHHHHHHHHhHHHHhhh-chhhhH-HHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHhChHH-------
Q 016814 199 -ELAEDRHWRVRLAIIEYIPLLASQL-GVGFFD-DKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEW------- 266 (382)
Q Consensus 199 -~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~-~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~------- 266 (382)
++-+.++.-|+..+++....++..- |.++.. ..++..+-+.+. |.++.-+-.+....+++ +|++.
T Consensus 220 aElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf---fgkeaimdvsee 296 (524)
T KOG4413|consen 220 AELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF---FGKEAIMDVSEE 296 (524)
T ss_pred HHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH---hcchHHhhcCHH
Confidence 3344577788888888888887644 333332 234444444442 44444444444444444 34332
Q ss_pred -HHhh---hHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhh----hHHHHHhhccCCCcc-HHHHHHHHHHHHh
Q 016814 267 -AMQH---ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSR----LLPVVINASKDRVPN-IKFNVAKVLQSLI 337 (382)
Q Consensus 267 -~~~~---l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~----~l~~l~~~l~d~~~~-vR~~a~~~l~~i~ 337 (382)
..+. .+...++++...++....+|+.+++.++.+........+ -...++....|.+.+ -...++.+|..|+
T Consensus 297 aicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 297 AICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred HHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 2222 233345566666778889999999999877543322211 122334444455554 4566777888776
Q ss_pred hhhhH--H--------------HHHH-------hHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 338 PIVDQ--S--------------MVEK-------TIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 338 ~~~~~--~--------------~~~~-------~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
..... + +|.. .=+..+...++.|.+++|.++.+.+-.++.
T Consensus 377 gelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 377 GELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred ccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 53321 1 1110 123345556788899999999999887763
No 103
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=4.6e-05 Score=70.49 Aligned_cols=288 Identities=12% Similarity=0.129 Sum_probs=169.4
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Q 016814 34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 113 (382)
Q Consensus 34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~ 113 (382)
...+.+++..++.++...|-..+++.+..+....+.+.. ..+..+.-++..+....|-+|...|..++...+... .
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~ 318 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--T 318 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--c
Confidence 456888899999999999999999998877654443332 256666778899999999999999999987665431 1
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhH
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 193 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 193 (382)
..=+-+..++.|.+-.+-.-++..+-.-.. +...+.++..+..++.|-+.+-+..++.++..++...+... ..+
T Consensus 319 ~cN~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~ 392 (865)
T KOG1078|consen 319 VCNLDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVM 392 (865)
T ss_pred ccchhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHH
Confidence 223456677888887766666655554433 44455666666666555454444444555555544443322 345
Q ss_pred HHHHHHHhc-CCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhH
Q 016814 194 LPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 272 (382)
Q Consensus 194 lp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~ 272 (382)
++.+..++. +....-+.+..+++..++....... ..-+..+...+.|.. -+.-+...++.+.+........+..+
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK--e~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyi 468 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK--ERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYI 468 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh--hHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhh
Confidence 555555554 3445667777777777665332211 112222222333321 22333333333333222111112233
Q ss_pred HHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHh
Q 016814 273 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 337 (382)
Q Consensus 273 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 337 (382)
..+.+..-=.+..+|.+|..++.+++ .+.....+.+.-.+.+++.|....||..|-..+..+.
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 34444333346678888888887777 3333344556666677778888888888777776665
No 104
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.52 E-value=0.0001 Score=67.27 Aligned_cols=270 Identities=13% Similarity=0.118 Sum_probs=146.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHH
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 156 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 156 (382)
...++...+ .+..++.-|.+.+..+.+.++.- .+..+..+..+++|.+..||..+++.|..+|..-+ .....+..
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaD 99 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVAD 99 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHH
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHH
Confidence 444455555 35778888889999888877543 24567888889999999999999999999987432 34678888
Q ss_pred HHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHh--cCCCchHHHHHHHHhHHHHhhhchh------hh
Q 016814 157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVG------FF 228 (382)
Q Consensus 157 ~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~------~~ 228 (382)
++.+++..+++.....+-++|..+...-+... +-..+.++. ...+..+|..++..+..-...++.+ ..
T Consensus 100 vL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~ 175 (556)
T PF05918_consen 100 VLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEM 175 (556)
T ss_dssp HHHHHTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHH
Confidence 99999988888888888788877765533322 222333333 2345568888888776544434333 33
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC---hHHHHhhhHHHHHhhhc-----C-cchHHHHHHHH----HHH
Q 016814 229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMIN-----N-PHYLYRMTILR----AIS 295 (382)
Q Consensus 229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~-----~-~~~~~r~~a~~----~l~ 295 (382)
...+...+...|.|-..+-=......|..+ +.++ ...-...+++.+.+... + .+...-...+. ++.
T Consensus 176 e~~i~~~ikkvL~DVTaeEF~l~m~lL~~l-k~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp 254 (556)
T PF05918_consen 176 EEFIVDEIKKVLQDVTAEEFELFMSLLKSL-KIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALP 254 (556)
T ss_dssp HHHHHHHHHHHCTT--HHHHHHHHHHHHTS-GG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhC-ccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhH
Confidence 455677777778773322111122222221 1111 12233456666664431 1 12222223333 333
Q ss_pred HhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhc
Q 016814 296 LLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT 357 (382)
Q Consensus 296 ~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~ 357 (382)
.+........+...+...++..+.+-.+..|...+++++.++...+... ...++|.+..++
T Consensus 255 ~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L 315 (556)
T PF05918_consen 255 FFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL 315 (556)
T ss_dssp G-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence 3444444445666666666666666677899999999999999888655 445555555443
No 105
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=9.4e-05 Score=67.80 Aligned_cols=205 Identities=16% Similarity=0.109 Sum_probs=122.8
Q ss_pred HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc--hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh
Q 016814 150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 227 (382)
Q Consensus 150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~--~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 227 (382)
..+.++.++......++..||..+++-+..+....+ .+.+.+.+...+..-+.|..+.||..++.++..+-..-+.+.
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 345555555566666778888888888877766322 233336777777777788888888888888877753222221
Q ss_pred hHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHH-HHHHHHhccccChhh
Q 016814 228 FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI-LRAISLLAPVMGSEI 305 (382)
Q Consensus 228 ~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a-~~~l~~l~~~~~~~~ 305 (382)
. .+...+..++ +||+++||.+|+.++..=. .=+|.+.+...|-+..+|..+ ..++..+ .....+
T Consensus 162 ~--~v~n~l~~liqnDpS~EVRRaaLsnI~vdn----------sTlp~IveRarDV~~anRrlvY~r~lpki-d~r~ls- 227 (892)
T KOG2025|consen 162 C--PVVNLLKDLIQNDPSDEVRRAALSNISVDN----------STLPCIVERARDVSGANRRLVYERCLPKI-DLRSLS- 227 (892)
T ss_pred c--cHHHHHHHHHhcCCcHHHHHHHHHhhccCc----------ccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhh-
Confidence 1 1222333333 5788888888877764322 244666677777665555544 3445444 222222
Q ss_pred hhhhhHHHHHhhccCCCccHHHHHHHHHHH-HhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814 306 TCSRLLPVVINASKDRVPNIKFNVAKVLQS-LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS 374 (382)
Q Consensus 306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~-i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 374 (382)
..+-+-.+-.+++|....||.++..++.. +.... ...++..|.++--....+|+..|.+|+-.
T Consensus 228 -i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 228 -IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred -HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 22444455667888888888887776654 32221 13455566666555666777777777766
No 106
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=4.7e-05 Score=69.71 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=121.9
Q ss_pred ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh--CHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH
Q 016814 71 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL--NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 71 ~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~--~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
.....++..+++....++..||..+++.+..+.... -++...+.+...+..-+.|..|.||..|+.++..+-..-+++
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 344556777777888889999999999999887732 345566788888888899999999999999999887432222
Q ss_pred hHHHhhHHHHHHhh-cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHh-HHHHhhhchh
Q 016814 149 ATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI-PLLASQLGVG 226 (382)
Q Consensus 149 ~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l-~~l~~~~~~~ 226 (382)
. -.+...+..++ +|++++||.+++.++..= +.-+|.+.+-..|-+..+|+.+.+.+ +.+ ....-.
T Consensus 161 e--~~v~n~l~~liqnDpS~EVRRaaLsnI~vd----------nsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~ls 227 (892)
T KOG2025|consen 161 E--CPVVNLLKDLIQNDPSDEVRRAALSNISVD----------NSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSLS 227 (892)
T ss_pred c--ccHHHHHHHHHhcCCcHHHHHHHHHhhccC----------cccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhh
Confidence 1 23445555554 678999999998877542 44567777777888888877766643 333 211111
Q ss_pred hhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 016814 227 FFDDKLGALCMQWLQDKVYSIRDAAANNLKR 257 (382)
Q Consensus 227 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 257 (382)
.++-.-.+.+.+.|.+..|+.++...+..
T Consensus 228 --i~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 228 --IDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred --HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 13455667788999999999998877654
No 107
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00023 Score=65.32 Aligned_cols=310 Identities=12% Similarity=0.027 Sum_probs=168.8
Q ss_pred hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC--CCcHHHHHHHHHHHHHHHHhhCHHH
Q 016814 33 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPEL 110 (382)
Q Consensus 33 ~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~--d~~~~VR~~a~~~l~~l~~~~~~~~ 110 (382)
+.+.+...+.+-+...|+.--..|..++++++..--.+.+ -+-+-+++. +...-||+.++-++..+-+..++-.
T Consensus 108 l~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~ 183 (938)
T KOG1077|consen 108 LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV 183 (938)
T ss_pred HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc
Confidence 3444555555555666777778888888877643222222 222223333 3457799999999999887643221
Q ss_pred HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh---cC-------------CChHHHHHHH
Q 016814 111 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL---KD-------------EFPDVRLNII 174 (382)
Q Consensus 111 ~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d-------------~~~~vr~~~~ 174 (382)
-...-...+..+++|.+-.|-.++...+..++...+++. ..-+.+.+..+. .. ++|=+...++
T Consensus 184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~ 262 (938)
T KOG1077|consen 184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY-KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL 262 (938)
T ss_pred ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH-hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence 112334567778888888888888888888877665432 222222222221 10 1111111111
Q ss_pred HhhHHhhhhhchhhHhhhHHHHHHHHh---c----CCCc---hHHHHHHHHhHHHHhhhc-hhhhHHHHHHHHHHHhccc
Q 016814 175 SKLDQVNQVIGIDLLSQSLLPAIVELA---E----DRHW---RVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDK 243 (382)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~llp~l~~~~---~----d~~~---~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~ 243 (382)
..+... ...........+...+..++ + .++. .++.+.+-..-.++-+++ .......-+..+.+++.+.
T Consensus 263 rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r 341 (938)
T KOG1077|consen 263 RLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR 341 (938)
T ss_pred HHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc
Confidence 111111 00000000011222222222 1 1111 111122222222223332 2223344556667778888
Q ss_pred hhHHHHHHHHHHHHHHHHhCh-HHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCC
Q 016814 244 VYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 321 (382)
Q Consensus 244 ~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~ 321 (382)
+..+|.-|++++..++..-.. +.... -...++..++ +++..+|..|+..+=.++..-..+ .++..+++++...
T Consensus 342 E~NiRYLaLEsm~~L~ss~~s~davK~-h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak----~IV~elLqYL~tA 416 (938)
T KOG1077|consen 342 ETNIRYLALESMCKLASSEFSIDAVKK-HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK----QIVAELLQYLETA 416 (938)
T ss_pred cccchhhhHHHHHHHHhccchHHHHHH-HHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH----HHHHHHHHHHhhc
Confidence 888888888888888764211 22233 2566777777 888999999999998888665544 5666677777777
Q ss_pred CccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHH
Q 016814 322 VPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCL 353 (382)
Q Consensus 322 ~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l 353 (382)
.+.+|.-.+--++-+++.+..+ ++..-++..+
T Consensus 417 d~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 417 DYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 8889988888888888877654 3444444433
No 108
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.46 E-value=9.7e-06 Score=70.74 Aligned_cols=290 Identities=16% Similarity=0.118 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHHHHHhccCh-hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHH-HH---
Q 016814 11 DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPA-YV--- 81 (382)
Q Consensus 11 ~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~-l~--- 81 (382)
..+|..+.+++..++.+++- ....-++...+.....|.++.+...+.+++..+...++.+ ..+..+... +.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~ 348 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM 348 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence 57899999999999998864 3334456666777788999999999999999998877632 222222111 11
Q ss_pred ------HhcCC-CcHHHHHHHHHHHHHHHHh----hCHHHHHHhhhHhhhhhcCCCc-hHHHHHHHHHHHhhccccChHh
Q 016814 82 ------RLLRD-NEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGKDA 149 (382)
Q Consensus 82 ------~~l~d-~~~~VR~~a~~~l~~l~~~----~~~~~~~~~il~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~~ 149 (382)
....| ..+....+++.++.++... ++.+ .....+.+...+.|.. .-||.++.++++.+.-+-+...
T Consensus 349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~--~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~ 426 (728)
T KOG4535|consen 349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND--RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ 426 (728)
T ss_pred ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc--chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence 11122 2244566666776665432 2222 1245677777777654 4588999998887765544322
Q ss_pred ---HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh-----chhhHhhh----HHHHHHHH---hcCCCchHHHHHHH
Q 016814 150 ---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-----GIDLLSQS----LLPAIVEL---AEDRHWRVRLAIIE 214 (382)
Q Consensus 150 ---~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~-----~~~~~~~~----llp~l~~~---~~d~~~~vr~~~~~ 214 (382)
+...-...+...+.|..-.+|..++.+++.+...+ +++.+.+. ++..+... +...+.+||..+.+
T Consensus 427 d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 427 DVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred hHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 33455566777788888999999999998876653 12223222 33322222 23456789999999
Q ss_pred HhHHHHhhhchh---hhH----HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh----HHHHhhhHHHHHhhhcC-c
Q 016814 215 YIPLLASQLGVG---FFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINN-P 282 (382)
Q Consensus 215 ~l~~l~~~~~~~---~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~~-~ 282 (382)
.++.+.+.+.+- -+. ..+...+-.........||..++.+++.+.++-.- ..+...++|.+..++.+ .
T Consensus 507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 999988766521 111 11222222222345678999999999999875321 22456788888888765 5
Q ss_pred chHHHHHHHHHHHHhccccC
Q 016814 283 HYLYRMTILRAISLLAPVMG 302 (382)
Q Consensus 283 ~~~~r~~a~~~l~~l~~~~~ 302 (382)
|..+|..|+.++..-.+-.+
T Consensus 587 NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 587 NFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred cceEeehhhhhhcCCCCccc
Confidence 78999999998877665444
No 109
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.4e-05 Score=69.57 Aligned_cols=158 Identities=20% Similarity=0.150 Sum_probs=104.6
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhH
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 193 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 193 (382)
..-|.+.+++.|.+|..|.....+++.--...|+. ..+-..+.-.++|.+.+||+++..+++-++-. . ...
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---kair~lLh~aVsD~nDDVrRaAVialGFVl~~-d-----p~~ 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-D-----PEQ 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---hhHHHhhcccccccchHHHHHHHHHheeeEec-C-----hhh
Confidence 35577888999999999998887766433323322 12223333347899999999999998876422 1 234
Q ss_pred HHHHHHHh-cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH--HHhh
Q 016814 194 LPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQH 270 (382)
Q Consensus 194 lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~ 270 (382)
+|...+++ .+.|+.||..++-.++..+..-|.. .-+.++..+..|+..-||+.|+-+++.+.-....+. -...
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~ 665 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNG 665 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHH
Confidence 44444444 5678999999999999888766654 344556667789999999999999998875543211 1123
Q ss_pred hHHHHHhhhcCcch
Q 016814 271 ITPQVLEMINNPHY 284 (382)
Q Consensus 271 l~~~l~~~l~~~~~ 284 (382)
+...+.+.+.|++.
T Consensus 666 frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 666 FRKQLEKVINDKHE 679 (929)
T ss_pred HHHHHHHHhhhhhh
Confidence 44444555555553
No 110
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.45 E-value=9.4e-05 Score=63.69 Aligned_cols=179 Identities=21% Similarity=0.205 Sum_probs=106.7
Q ss_pred cCCCchHHHHHHHHhHHHHh-hhchhhh---HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC----hHHHHhhhHH
Q 016814 202 EDRHWRVRLAIIEYIPLLAS-QLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQHITP 273 (382)
Q Consensus 202 ~d~~~~vr~~~~~~l~~l~~-~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~~l~~ 273 (382)
.+++...|..++..+..+.. ++-++++ ...+++.+.+.++-...+-+..|+++++-++-.+| .+.+.+.+.|
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~ 132 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKP 132 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Confidence 45556677777766665543 2223332 23566666676766555566667777777776665 1345566777
Q ss_pred HHHhhhcCcc--hHHHHHHHHHHHHhccccChh-hhhh---hhHHHHHh--hcc-C---------CCccHHHHHHHHHHH
Q 016814 274 QVLEMINNPH--YLYRMTILRAISLLAPVMGSE-ITCS---RLLPVVIN--ASK-D---------RVPNIKFNVAKVLQS 335 (382)
Q Consensus 274 ~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~-~~~~---~~l~~l~~--~l~-d---------~~~~vR~~a~~~l~~ 335 (382)
.+...+.|.. ...|..++.+++.++-..+.+ .-.. ..+..++. ..+ | +++.+..+|+.+.+.
T Consensus 133 ~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~l 212 (309)
T PF05004_consen 133 VLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWAL 212 (309)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHH
Confidence 7777777654 456677777776655433322 1112 23332211 111 1 124578888888888
Q ss_pred HhhhhhHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 336 LIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 336 i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
+...++.. ......+|.|..++..++.+||.+|.++|+.+.....
T Consensus 213 Llt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 213 LLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 87766653 2334567777777777788888888888887766543
No 111
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.001 Score=62.56 Aligned_cols=183 Identities=15% Similarity=0.161 Sum_probs=131.3
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChh----hhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCCcc---cc
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP---TR 73 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~---~~ 73 (382)
|+.|-...++.....|+.-+..+...-..+ .-.+.+.|.+..++++ .+..+-..||++|..+++.++... +.
T Consensus 173 L~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~ 252 (1051)
T KOG0168|consen 173 LQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD 252 (1051)
T ss_pred HHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec
Confidence 445555556666666554444443322221 1245688999998875 478999999999999999998742 23
Q ss_pred cchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--H
Q 016814 74 MDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--T 150 (382)
Q Consensus 74 ~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~ 150 (382)
...+|.+.+-+. =+.-.|-+.++++|..+.+..+.......-+..+..++.=-+..+++.|+.....+|+.+..+. +
T Consensus 253 ~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~ 332 (1051)
T KOG0168|consen 253 EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHF 332 (1051)
T ss_pred ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchH
Confidence 458898876554 4567899999999999998877765444444444444443456788888888888998887654 3
Q ss_pred HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 016814 151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 184 (382)
Q Consensus 151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~ 184 (382)
.-..+|.++.++...+..+-+.++.++.+++...
T Consensus 333 v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 333 VMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 4577899999999999999999999998887654
No 112
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.42 E-value=0.00034 Score=60.29 Aligned_cols=202 Identities=15% Similarity=0.140 Sum_probs=140.2
Q ss_pred HhhcCCChHHHHHHHHhhHHhhhh-hchhhH---hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc----hhhhHHH
Q 016814 160 SLLKDEFPDVRLNIISKLDQVNQV-IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDK 231 (382)
Q Consensus 160 ~~l~d~~~~vr~~~~~~l~~~~~~-~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~ 231 (382)
..+.+.....|..++..+..+... +-.+.+ ...++..+...++....+-+..+++.++.++-.+| .+.+.+.
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~ 129 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE 129 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Confidence 334566788999998888776533 222222 25677888888877766777788888998887766 3445567
Q ss_pred HHHHHHHHhccch--hHHHHHHHHHHHHHHHHhChHH-HHh---hhHHHHHh--hhc-C---------cchHHHHHHHHH
Q 016814 232 LGALCMQWLQDKV--YSIRDAAANNLKRLAEEFGPEW-AMQ---HITPQVLE--MIN-N---------PHYLYRMTILRA 293 (382)
Q Consensus 232 l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~-~~~---~l~~~l~~--~l~-~---------~~~~~r~~a~~~ 293 (382)
+.|.+.+.+.|.. ..+|.+++.+++-.+...+.+. -.. ..+..++. ..+ + ++..+..+|+.+
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 8899999988864 4678888888888876554421 111 12221111 111 1 135789999999
Q ss_pred HHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH------HHHHhHHHHHHHhcCCCC
Q 016814 294 ISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS------MVEKTIRPCLVELTEDPD 361 (382)
Q Consensus 294 l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~------~~~~~i~~~l~~l~~d~~ 361 (382)
.+.+...++.. ...+..+|.|...|.+++.+||.+|-++|..+++..... .....+...+..+..|..
T Consensus 210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS~ 286 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDSS 286 (309)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhcc
Confidence 99998887763 345678899999999999999999999999998765431 234667778888877753
No 113
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=7.4e-05 Score=69.91 Aligned_cols=181 Identities=19% Similarity=0.165 Sum_probs=130.4
Q ss_pred hhhhcCCCchHHHHHHHHHHHhhccccChH--hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHH
Q 016814 119 VKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 196 (382)
Q Consensus 119 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~ 196 (382)
....+.|+.+.+|..++..+..+.+.-.+. .....++.++.+.++|+++.|--++++.+..+++.++ +.++|.
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~d 806 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPD 806 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHH
Confidence 334567888899999999999988633222 2347888999999999999999999998888888765 567777
Q ss_pred HHHHh----cCCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC---hHHH
Q 016814 197 IVELA----EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWA 267 (382)
Q Consensus 197 l~~~~----~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~ 267 (382)
+.+.- +....+.|..+=+++..++...|+-. +...++..++....|++.+-|..++..+|.++.... .+++
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 76632 12213344444477777777777533 235677888888899999999999999999987653 3444
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh
Q 016814 268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304 (382)
Q Consensus 268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 304 (382)
.+.+...+...-.|....+|.+|+..+..+....|.+
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d 923 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED 923 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh
Confidence 4433333333335778999999999999998877743
No 114
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4.3e-05 Score=70.22 Aligned_cols=261 Identities=14% Similarity=0.080 Sum_probs=155.5
Q ss_pred hHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814 76 LVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 154 (382)
Q Consensus 76 ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 154 (382)
+...+.+.+.+. ++.||..++-.||-.+-.-... .+...+++.+...+.-.-+++..++|-+.-..... ..
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~----eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~----ea 485 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE----EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ----EA 485 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccH----HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH----HH
Confidence 445555555443 4566777666655432221222 34455555554444444455555555544222222 22
Q ss_pred HHHHHHhhcC-CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814 155 LPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 233 (382)
Q Consensus 155 ~~~l~~~l~d-~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 233 (382)
+.-+.....+ ..+.+.++..-.+.-+. +|.+ +..-|.+.+++.|+++-.|...+-.+..--..-|... .+
T Consensus 486 iedm~~Ya~ETQHeki~RGl~vGiaL~~--ygrq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk----ai 556 (929)
T KOG2062|consen 486 IEDMLTYAQETQHEKIIRGLAVGIALVV--YGRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK----AI 556 (929)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHH--hhhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh----hH
Confidence 2222233333 34555555554443332 2222 3456778888899999999988877765433233332 22
Q ss_pred HHHHH-HhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhhhhhhhH
Q 016814 234 ALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLL 311 (382)
Q Consensus 234 ~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l 311 (382)
..+.+ ..+|.+..||.+|.-++|.++..- ....|...++|. +-|+.||..++.+++..+...|.. ..+
T Consensus 557 r~lLh~aVsD~nDDVrRaAVialGFVl~~d------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi 626 (929)
T KOG2062|consen 557 RRLLHVAVSDVNDDVRRAAVIALGFVLFRD------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAI 626 (929)
T ss_pred HHhhcccccccchHHHHHHHHHheeeEecC------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHH
Confidence 23333 368999999999999999887431 224455556555 456999999999999988777765 233
Q ss_pred HHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH--HHHhHHHHHHHhcCCCCcc
Q 016814 312 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPDVD 363 (382)
Q Consensus 312 ~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~~ 363 (382)
..+-.+.+|++.=||+.|+-+++.|.....+.. -...+...+.+...|.+.+
T Consensus 627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 627 NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 445556779888899999999999876554321 2345666677777776655
No 115
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.41 E-value=3.2e-05 Score=67.43 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=129.9
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHH-
Q 016814 35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPE- 109 (382)
Q Consensus 35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~- 109 (382)
+.+...+.+.-.+....-|+.+...|..+...-+- +.+..+++..+++.+.| .+...|+.|++.|..+++.-...
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 44555556665665667788887766655432111 22345688888899998 67889999999999988765443
Q ss_pred -HHHHhhhHhhhhhcCCCchHHHHHHHHH-HHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814 110 -LAIQHILPCVKELSSDSSQHVRSALASV-IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187 (382)
Q Consensus 110 -~~~~~il~~l~~~~~d~~~~vr~~a~~~-l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~ 187 (382)
...+..+-.+.+...|..+.|-..|.+. +..++.+.+-.. ...+-|.+.. .+...-..+++.+.++++.+..+
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILT----ADEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHH
Confidence 1123445566667777777665555554 444555555332 2344444443 45666667888889999888887
Q ss_pred hH---hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHH
Q 016814 188 LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 232 (382)
Q Consensus 188 ~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 232 (382)
.+ ...+.|.+.+..++.+..||++++.+|-.+...+|.+.+.+++
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL 488 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL 488 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence 65 3556788888888999999999999999999999976555433
No 116
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00013 Score=68.38 Aligned_cols=220 Identities=12% Similarity=0.154 Sum_probs=151.7
Q ss_pred HHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814 156 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 233 (382)
Q Consensus 156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 233 (382)
......+.|+.+.+|..++..+..+.+.-.+. ...+.++......++|++..|--++++.+..+++..+. .++
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----~il 804 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----DIL 804 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----hhH
Confidence 33344566778888888888888887632222 22366888899999999999999999988888876444 344
Q ss_pred HHHHH-Hh---ccchhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC--hhh
Q 016814 234 ALCMQ-WL---QDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEI 305 (382)
Q Consensus 234 ~~l~~-~l---~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~--~~~ 305 (382)
|-+.. +. +-+..+-|-..-+++.+++...|.= .+...++..++....+++...|.+++..++.++.... ...
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 44443 22 2222344444458888888888762 3566889999999999988899999999999876543 233
Q ss_pred hhhhhHHHHHhh-ccCCCccHHHHHHHHHHHHhhhhhHHHHH------HhHHHHHHHh-cCCCCccHHhHHHHHHHHHHH
Q 016814 306 TCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQSMVE------KTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 306 ~~~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~~~~~~~~~------~~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~ 377 (382)
+..+++..++.. -.|....+|.+|+..+..+....|.+... -.....+... -.+++..+|..|..++..+..
T Consensus 885 ~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 885 FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 444555544443 45888999999999999998877754211 1222223332 345677799999999998887
Q ss_pred Hhc
Q 016814 378 VMM 380 (382)
Q Consensus 378 ~~~ 380 (382)
++.
T Consensus 965 ~l~ 967 (982)
T KOG4653|consen 965 ALE 967 (982)
T ss_pred HHH
Confidence 764
No 117
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=6.7e-05 Score=68.62 Aligned_cols=146 Identities=22% Similarity=0.212 Sum_probs=111.6
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh-------HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhh----h
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA-------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN----Q 182 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~----~ 182 (382)
-.-|.+...++-.+..||..|+..+-.+-+..+++. ..+.=...+.++++|+.+.||..+...+.++. .
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 345677788899999999999999999888777543 23444567778999999999999887776653 3
Q ss_pred hhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814 183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 259 (382)
Q Consensus 183 ~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 259 (382)
.+++.-+.+.+-..+-.+..|....||.+..+.+..++..-......++++|.+...+.|++..||-++.+.+..+-
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 44544443333334445567888899999999999998655555556789999999999999999999998887763
No 118
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.36 E-value=0.0006 Score=59.98 Aligned_cols=364 Identities=13% Similarity=0.085 Sum_probs=199.3
Q ss_pred CchHHHHHHHHHHHHHHhccChh---hhhhhhhhh--------hhh-hccCCCHHHHHHHHHHHHHHHHHh---------
Q 016814 9 DQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPV--------IVN-FSQDKSWRVRYMVANQLYELCEAV--------- 67 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~--------l~~-~~~d~~~~vR~~a~~~l~~l~~~~--------- 67 (382)
-+..||..|+.++..+.+.++.. .+|..++|- ++. .++|++++.|..+.+.+..+....
T Consensus 8 ~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 8 YQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 35678999999999888877653 234444432 222 358999999999999998876532
Q ss_pred -CCcccccc-------hH---HHHH-HhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHH
Q 016814 68 -GPEPTRMD-------LV---PAYV-RLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVR 131 (382)
Q Consensus 68 -~~~~~~~~-------ll---~~l~-~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr 131 (382)
++..+... +. -.++ -+....++++-..+++++..+....+-+ .+.-+++..++.+++++++.||
T Consensus 88 ~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 88 TSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVR 167 (728)
T ss_pred cCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 22221110 11 1111 1223344566666667777666554433 2334566666677777777777
Q ss_pred HHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHH------HHHhhHHhhhh-------hchhhH-------h-
Q 016814 132 SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN------IISKLDQVNQV-------IGIDLL-------S- 190 (382)
Q Consensus 132 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~------~~~~l~~~~~~-------~~~~~~-------~- 190 (382)
.++...++.+.. .....|-+...+.-.... |.. ......++... .|.+.- .
T Consensus 168 vs~l~~~~~~v~-------t~~~~pei~~~~~~~~s~-~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~ 239 (728)
T KOG4535|consen 168 VSSLTLLGAIVS-------THAPLPEVQLLLQQPCSS-SNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIR 239 (728)
T ss_pred hHHHHHHHHHHh-------cCCCCHHHHHHhcCCCcc-ccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceee
Confidence 777777766652 234555555544321100 000 01111111110 000000 0
Q ss_pred --hhHHHH----------HHHHhcC--CCchHHHHHHHHhHHHHhhhchhh-hHHHHHHHHHHHhccchhHHHHHHHHHH
Q 016814 191 --QSLLPA----------IVELAED--RHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLQDKVYSIRDAAANNL 255 (382)
Q Consensus 191 --~~llp~----------l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l 255 (382)
..+.|. ...+++. ....+|..+.+.+..++..+|... +.-++...+-..+.+..+.+..-+...+
T Consensus 240 ~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll 319 (728)
T KOG4535|consen 240 LCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLL 319 (728)
T ss_pred eeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHH
Confidence 001110 1111111 123588899999999998887533 2345777777788899999999999999
Q ss_pred HHHHHHhChH----HHHhhhHHH-HH----------hhhcCcchHHHHHHHHHHHHhccc--cChhhhhhhhHHHHHhhc
Q 016814 256 KRLAEEFGPE----WAMQHITPQ-VL----------EMINNPHYLYRMTILRAISLLAPV--MGSEITCSRLLPVVINAS 318 (382)
Q Consensus 256 ~~~~~~~~~~----~~~~~l~~~-l~----------~~l~~~~~~~r~~a~~~l~~l~~~--~~~~~~~~~~l~~l~~~l 318 (382)
.++....+.+ .....+... +. ..+.........+++.++..++.. .+-..-.....+.++..+
T Consensus 320 ~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC 399 (728)
T KOG4535|consen 320 EELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGC 399 (728)
T ss_pred HHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcc
Confidence 9988776532 111111111 11 111122345666777777776532 222222345666666666
Q ss_pred cCC-CccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 319 KDR-VPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 319 ~d~-~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
.|. +.-+|..|+++++...-+.+.. .+.......+...+.|..-++|..++.+++.|.+.+-
T Consensus 400 ~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~ 465 (728)
T KOG4535|consen 400 NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALI 465 (728)
T ss_pred cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHH
Confidence 643 4448888888887766554432 2333344444445566666777777777777766653
No 119
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.36 E-value=0.0027 Score=60.26 Aligned_cols=177 Identities=11% Similarity=0.078 Sum_probs=123.0
Q ss_pred hcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH---HHhhhHHHHHh
Q 016814 201 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLE 277 (382)
Q Consensus 201 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~ 277 (382)
..|..+-+|..+++.+...++.---..+.+.++..+.++..+.+.++-....+++..+++ +.+++ ..+.+.|.++.
T Consensus 500 ~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-~dpef~as~~skI~P~~i~ 578 (1005)
T KOG2274|consen 500 TMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-LDPEFAASMESKICPLTIN 578 (1005)
T ss_pred ccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhc-cChhhhhhhhcchhHHHHH
Confidence 356777788888888777663222223457788888899899999999888999988887 34433 23457776665
Q ss_pred hhc--CcchHHHHHHHHHHHHhccccC-hhhhhhhhHHHHHhhccCCC----ccHHHHHHHHHHHHhhhhhH---HHHHH
Q 016814 278 MIN--NPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRV----PNIKFNVAKVLQSLIPIVDQ---SMVEK 347 (382)
Q Consensus 278 ~l~--~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~----~~vR~~a~~~l~~i~~~~~~---~~~~~ 347 (382)
.+. ..++.+-..+-.++..+++.-. ..++.+..+|.++..+.-+. +.....++..|..+.+.-.+ +.+..
T Consensus 579 lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 579 LFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 542 2234566666666666654321 11367889999999887766 55777888888877765443 34567
Q ss_pred hHHHHHHHh-cCCCCccHHhHHHHHHHHHHHH
Q 016814 348 TIRPCLVEL-TEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 348 ~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~~ 378 (382)
+..|.+.++ ++..|..+-.++.++++.+..+
T Consensus 659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 659 YAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 888888884 5666778888899999887765
No 120
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.35 E-value=0.0022 Score=59.14 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhh
Q 016814 231 KLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEI 305 (382)
Q Consensus 231 ~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~ 305 (382)
.+.|.+.....+ .++.+..+|.-++.++.- ++.++. ..=+|.++..+. ++++.+|..|+-.++.+.-++..
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~fc-~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~-- 967 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFEFC-SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT-- 967 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHhhCCCcceeccceeeccccceehhh--
Confidence 355666666655 678888888888888764 344443 446677777665 88999999999999988766654
Q ss_pred hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 306 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
+....-..+...+.|.+..||..|+-++..+.-. .+.-...-++.+..++.|+|.++...|...+-.++.
T Consensus 968 ~~de~t~yLyrrL~De~~~V~rtclmti~fLila--gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 968 TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA--GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc--cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 4566777888999999999999999998877532 111123445677778889999888877777766654
No 121
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00038 Score=63.97 Aligned_cols=146 Identities=24% Similarity=0.223 Sum_probs=113.7
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-------HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc----cc
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LAIQHILPCVKELSSDSSQHVRSALASVIMGMA----PL 144 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-------~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~----~~ 144 (382)
+-|.+.+.++-++..||..|+..+..+-...+++ .+.++-...+.+++.|+-+.||+.++.-+..+. ..
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4567778889999999999999998886655544 234445577888999999999999887665543 45
Q ss_pred cChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHh
Q 016814 145 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 221 (382)
Q Consensus 145 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~ 221 (382)
+++....+.+-.++.++..|.+.+||..+.+.+..+...--.....+.++|.+...+.|++.+||.++...+..+-.
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 56665555555666777888999999999999998876543334448899999999999999999999998877644
No 122
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.33 E-value=0.00045 Score=64.04 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhccc--hhHHHHHHHHHH---HHHHHHhChHH---HHhhhHHHHHhhhc--------CcchHHHHHHHHH
Q 016814 230 DKLGALCMQWLQDK--VYSIRDAAANNL---KRLAEEFGPEW---AMQHITPQVLEMIN--------NPHYLYRMTILRA 293 (382)
Q Consensus 230 ~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~~~~~~~~~~---~~~~l~~~l~~~l~--------~~~~~~r~~a~~~ 293 (382)
+..+.++...+.++ +.++|..+++.+ ......++... +...+.......+. ..+...|..+.++
T Consensus 318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~ 397 (501)
T PF13001_consen 318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET 397 (501)
T ss_pred ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence 34556666666666 678899999988 77777766543 22233333333332 2346799999999
Q ss_pred HHHhccccChhh-hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHH-----HHhHHH-HHHHhcCCCCccHHh
Q 016814 294 ISLLAPVMGSEI-TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRP-CLVELTEDPDVDVRF 366 (382)
Q Consensus 294 l~~l~~~~~~~~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~-----~~~i~~-~l~~l~~d~~~~vr~ 366 (382)
+|.+++....-. -.-.++..++..+.++.+++|.+.-++|+.+..++....- ....+. .+.....+....+|.
T Consensus 398 lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~ 477 (501)
T PF13001_consen 398 LGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRY 477 (501)
T ss_pred HHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHH
Confidence 999998776542 2245677778888899999999999999999988764211 122222 222244556677888
Q ss_pred HHHHHHHHH
Q 016814 367 FATQAIQSI 375 (382)
Q Consensus 367 ~a~~al~~~ 375 (382)
.|.+-...+
T Consensus 478 ~avk~an~~ 486 (501)
T PF13001_consen 478 AAVKYANAC 486 (501)
T ss_pred HHHHHHHHh
Confidence 887766544
No 123
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.31 E-value=0.00044 Score=57.95 Aligned_cols=226 Identities=11% Similarity=0.085 Sum_probs=130.2
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhh----hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC-cccccchH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLV 77 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll 77 (382)
..-++++++.+|..|+..++.+...++++.. ...+..++.+-+.|. ..=..+++++..+.+.-.- ......++
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~~~~l~gl~~L~~~~~~~~~~~~~i~ 82 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACVQPALKGLLALVKMKNFSPESAVKIL 82 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHhCcCCChhhHHHHH
Confidence 3457788999999999999999998886433 344556666666433 3333448888877732211 11122344
Q ss_pred HHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhc-CCCchHHHHHHHHHHHhhccccChHhHHH
Q 016814 78 PAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIE 152 (382)
Q Consensus 78 ~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 152 (382)
..+.+..+-+ ....|..+.+.+..+....... ..-..++..+.+.+ ..++|.--..+.+.+..+...++.....+
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e 162 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAE 162 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 4444433322 3568999999998887765432 11234455555544 35667666667777776666555443445
Q ss_pred hhHHHHHHhh--------cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814 153 QLLPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 224 (382)
Q Consensus 153 ~l~~~l~~~l--------~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 224 (382)
.+++.+.-.. +|+..-.|.....++..... +...+.+..+|.+.+-+.+....++..+++.+...+..+|
T Consensus 163 ~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 163 DLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence 5555444331 23222223333333322211 1223446677777777777777777777777777777777
Q ss_pred hhhhHHHH
Q 016814 225 VGFFDDKL 232 (382)
Q Consensus 225 ~~~~~~~l 232 (382)
.....+.+
T Consensus 241 ~~~~~~~~ 248 (262)
T PF14500_consen 241 ADSLSPHW 248 (262)
T ss_pred HHHHHHHH
Confidence 65444433
No 124
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.31 E-value=0.0027 Score=58.11 Aligned_cols=134 Identities=18% Similarity=0.186 Sum_probs=95.9
Q ss_pred chhHHHHHHHHHHHHHHHHh---ChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh---hhhhhhhHHHHHh
Q 016814 243 KVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVIN 316 (382)
Q Consensus 243 ~~~~vr~~a~~~l~~~~~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~ 316 (382)
.+..++.+|+.++..+.... ....-..++...+.+.+.||...+.-+++.++..+.=.++. .......+..+..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 45667777777766665432 22222345666777788999999999999999998766653 2445667888999
Q ss_pred hccCCCccHHHHHHHHHHHHhhhhhHH----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 317 ASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 317 ~l~d~~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
++.++.+++|..+.++|-.+.-..... ....-....+..+.+||++.|+..+.+.+..+.
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998776443332 122334455566889999999998888887664
No 125
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.29 E-value=1.3e-06 Score=54.12 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814 284 YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQS 335 (382)
Q Consensus 284 ~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 335 (382)
|.+|..|+.+++.++...+.. .+...++|.+...++|+++.||..|+.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 566777777776665444432 4556666666666666666677777666664
No 126
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.27 E-value=0.00099 Score=55.84 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=141.2
Q ss_pred hhhhcCCCchHHHHHHHHHHHhhccccChHh----HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh--hchhhHhhh
Q 016814 119 VKELSSDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQS 192 (382)
Q Consensus 119 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~--~~~~~~~~~ 192 (382)
+...+.++++.+|..+...|..+...++++. ..+.++.++.+.+.| ...+.. ++.++..+.+. .+.+.. ..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~-~l~gl~~L~~~~~~~~~~~-~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQP-ALKGLLALVKMKNFSPESA-VK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHH-HHHHHHHHHhCcCCChhhH-HH
Confidence 4456677777778877777777776666432 235666777777754 333333 36666665532 222222 33
Q ss_pred HHHHHHHHh--cCCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChHHH
Q 016814 193 LLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWA 267 (382)
Q Consensus 193 llp~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~ 267 (382)
++..+.+-. +......|..+.+.+..+........ ..+.++..+.+.+. ..|++--..+.+.+..+...+..+.+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~ 160 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF 160 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence 433333322 22234688899998888877654322 22344555555444 56788888888888888888876666
Q ss_pred HhhhHHHHHhhh--------cCcchHHHHHHHHHHHHhccccC-hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 268 MQHITPQVLEMI--------NNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 268 ~~~l~~~l~~~l--------~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
.+.++..+.-++ +|+..-.|+--...+.. ++. ...+.+..+|.++.-|.++.+.++.-++++|.....
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~---cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRN---CLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHH---HhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 666777666554 23322233333333322 222 234678899999999999999999999999999999
Q ss_pred hhhHHHHHHhHHH
Q 016814 339 IVDQSMVEKTIRP 351 (382)
Q Consensus 339 ~~~~~~~~~~i~~ 351 (382)
.+|.+.....+.+
T Consensus 238 ~y~~~~~~~~~~~ 250 (262)
T PF14500_consen 238 NYGADSLSPHWST 250 (262)
T ss_pred HCCHHHHHHHHHH
Confidence 9997755544433
No 127
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.25 E-value=0.0034 Score=60.00 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=74.1
Q ss_pred hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHh
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRL 83 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~~l~~~ 83 (382)
+-.|+...||+.|.+.+.....+.......+..+.+++.++.|.-..+|+.++..|+.+...-+.-. ..+.-+-.++..
T Consensus 585 ~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~ 664 (1529)
T KOG0413|consen 585 LSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISM 664 (1529)
T ss_pred hccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHH
Confidence 3447788899999999999988887766667778999999999999999999999998764322211 112234556667
Q ss_pred cCCCcHHHHHHHHHHHHHHH
Q 016814 84 LRDNEAEVRIAAAGKVTKFC 103 (382)
Q Consensus 84 l~d~~~~VR~~a~~~l~~l~ 103 (382)
++|.+..|.+.|...+..+.
T Consensus 665 ~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 665 LNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HhccHHHHHHHHHHHHHHHH
Confidence 78888888888877665543
No 128
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0021 Score=60.31 Aligned_cols=253 Identities=15% Similarity=0.145 Sum_probs=157.9
Q ss_pred chHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHHHHHhCCc---c----------
Q 016814 10 QDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPE---P---------- 71 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~~---~---------- 71 (382)
.+.-|+.|.+.+..+++++.. ..+..++-..+.++..+ .+|.-+..++..+..++...+.. .
T Consensus 375 vdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~ 454 (960)
T KOG1992|consen 375 VDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV 454 (960)
T ss_pred cchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence 445688899999999998844 22334444455555554 47888888988888888654321 1
Q ss_pred --cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc-----
Q 016814 72 --TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL----- 144 (382)
Q Consensus 72 --~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~----- 144 (382)
+...++|.+..--..+.|.++..+++-+..+=+..+++... .++|.+...++.++.-|-.-|+.++..+...
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm-~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~ 533 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLM-ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSN 533 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHH-HHHHHHHHhccCcchHHHHHHHHHHHhccccccCcc
Confidence 11234444433222456778888888877776677776544 5779999999999999999999999987533
Q ss_pred ---cChHhHHHhhHHHHHHhh----c---CCChHHHHHHHHhhHHhhhhh---chhhHhhhHHHHHHHHhcCC-CchHHH
Q 016814 145 ---LGKDATIEQLLPIFLSLL----K---DEFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDR-HWRVRL 210 (382)
Q Consensus 145 ---~~~~~~~~~l~~~l~~~l----~---d~~~~vr~~~~~~l~~~~~~~---~~~~~~~~llp~l~~~~~d~-~~~vr~ 210 (382)
++++...+.+.+.+..++ . .+++.+-++....+.-.-+.. ++. ....+...+.+..+++ ++.--.
T Consensus 534 ~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~-~l~~Lteiv~~v~KNPs~P~fnH 612 (960)
T KOG1992|consen 534 AKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPE-LLRQLTEIVEEVSKNPSNPQFNH 612 (960)
T ss_pred ccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhH-HHHHHHHHHHHHhcCCCCchhHH
Confidence 333333344444555544 1 234444444333333221111 111 1122333333344444 455556
Q ss_pred HHHHHhHHHHhhhchh------hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh
Q 016814 211 AIIEYIPLLASQLGVG------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 264 (382)
Q Consensus 211 ~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 264 (382)
-+.+.++.+....+.. .+...++|.+...+..+-.+.---+.+.++.+++..+.
T Consensus 613 YLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 613 YLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG 672 (960)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6777777776655432 36788999999999888888888888999999887765
No 129
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.19 E-value=3e-06 Score=52.52 Aligned_cols=52 Identities=25% Similarity=0.230 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHh
Q 016814 89 AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMG 140 (382)
Q Consensus 89 ~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~ 140 (382)
|.||.+|+.+|+.++...+.. .+...++|.+..+++|+++.||..++.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 345555555555443322221 2334455555555555555555555555543
No 130
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0061 Score=57.43 Aligned_cols=364 Identities=16% Similarity=0.204 Sum_probs=198.9
Q ss_pred chHHHHHHHHHHHHHHh-ccCh---------hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHH
Q 016814 10 QDSVRLLAVEGCAALGK-LLEP---------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 79 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~-~~~~---------~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~ 79 (382)
++++|.+|+-.+....+ +..+ +...+.+...+..+.-.....+....-++++-+++.--++. +..++|-
T Consensus 52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~k-WptLl~d 130 (960)
T KOG1992|consen 52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDK-WPTLLPD 130 (960)
T ss_pred ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchh-hHHHHHH
Confidence 67889999988888877 3322 22234455555566656667888888888887774322222 5679999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-----HH--HHhhhH----hhhh-------hc----CCCc-----hHHHH
Q 016814 80 YVRLLRDNEAEVRIAAAGKVTKFCRILNPE-----LA--IQHILP----CVKE-------LS----SDSS-----QHVRS 132 (382)
Q Consensus 80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-----~~--~~~il~----~l~~-------~~----~d~~-----~~vr~ 132 (382)
+...++..+..+-.+.+..-.++-+....+ .+ ....+. .+.. +. +|.. -.|..
T Consensus 131 L~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vll 210 (960)
T KOG1992|consen 131 LVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLL 210 (960)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 999998877777767666666666655433 11 011111 1111 11 2222 01222
Q ss_pred HHHHHHHhhc-cccCh--HhHHHhhHHHHHHhhcC---------CCh----HHHHHHHHhhHHhhhhhchhhHhhhHHHH
Q 016814 133 ALASVIMGMA-PLLGK--DATIEQLLPIFLSLLKD---------EFP----DVRLNIISKLDQVNQVIGIDLLSQSLLPA 196 (382)
Q Consensus 133 ~a~~~l~~l~-~~~~~--~~~~~~l~~~l~~~l~d---------~~~----~vr~~~~~~l~~~~~~~~~~~~~~~llp~ 196 (382)
..++.+..+. +-++. +...+..++.+.+++.- +.. .+|...+..+.-....+. +.+ +.++|.
T Consensus 211 l~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYe-Eef-~~fl~~ 288 (960)
T KOG1992|consen 211 LICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYE-EEF-QPFLPD 288 (960)
T ss_pred HHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhH-HHH-HhhHHH
Confidence 2233333332 11121 11235566777777652 222 344444444443333322 222 333343
Q ss_pred HH----HHhcCCCchHHH-----HHHHHhHHHHhhhc-----------------------------hhhhHHHHHHHHHH
Q 016814 197 IV----ELAEDRHWRVRL-----AIIEYIPLLASQLG-----------------------------VGFFDDKLGALCMQ 238 (382)
Q Consensus 197 l~----~~~~d~~~~vr~-----~~~~~l~~l~~~~~-----------------------------~~~~~~~l~~~l~~ 238 (382)
+. .++.+-.+..|. .++..|..+++.-. .+.|.+.-+..+.+
T Consensus 289 fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRR 368 (960)
T KOG1992|consen 289 FVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRR 368 (960)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHH
Confidence 33 344433333332 33344444332111 11122222333333
Q ss_pred Hhccch-hHHHHHHHHHHHHHHHHhChHH---HHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhcccc-----C-----
Q 016814 239 WLQDKV-YSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVM-----G----- 302 (382)
Q Consensus 239 ~l~d~~-~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~-----~----- 302 (382)
-+.-.+ ..-|.+|+..+..+++.+.... +...+-..+.++-++| +|.-+..+++.+..++..- |
T Consensus 369 DlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn 448 (960)
T KOG1992|consen 369 DLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTN 448 (960)
T ss_pred hcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecc
Confidence 333222 2347778899999998884421 1121222222233344 6999999999998886431 1
Q ss_pred -----hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 303 -----SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 303 -----~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
.+++...++|.+..--..+.|-+|..+++-+-.+...++++ ....++|.+...+..+..-|-..|+.++..+-.
T Consensus 449 ~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~-~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 449 ELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKE-HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred ccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChH-HHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 12455666776665444456778888888888777777765 456788888888888888888888888877643
No 131
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.17 E-value=3.4e-06 Score=45.00 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=15.9
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCR 104 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~ 104 (382)
+|.+.++++|++|.||.+|+.+|+.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5555556666666666666666655554
No 132
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.14 E-value=0.00019 Score=64.52 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=79.2
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHH
Q 016814 74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI 151 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 151 (382)
...+-.+++.+.+++..||..+++.+..+....++ +...+.++..+.+-+-|..+.||..|+.++..+-+.-+++.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-- 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-- 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--
Confidence 34566667777888899999999999999888876 66677888888888889999999999999998876555432
Q ss_pred HhhHHHHHHhh-cCCChHHHHHHHHhhHH
Q 016814 152 EQLLPIFLSLL-KDEFPDVRLNIISKLDQ 179 (382)
Q Consensus 152 ~~l~~~l~~~l-~d~~~~vr~~~~~~l~~ 179 (382)
..+...+...+ +|++.+||..++..+..
T Consensus 168 n~~~n~l~~~vqnDPS~EVRr~allni~v 196 (885)
T COG5218 168 NRIVNLLKDIVQNDPSDEVRRLALLNISV 196 (885)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHeee
Confidence 23344444443 67889999988776643
No 133
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=0.0015 Score=65.64 Aligned_cols=327 Identities=12% Similarity=0.113 Sum_probs=177.8
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChh-----hhhhhhhhhhhh----hc--cCCCHHHHHHHHHHHHHHHHHhC----
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQ-----DCVAHILPVIVN----FS--QDKSWRVRYMVANQLYELCEAVG---- 68 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~ll~~l~~----~~--~d~~~~vR~~a~~~l~~l~~~~~---- 68 (382)
.|+++++-.||...+-++..+.+.+.|+ .....+..++.. +. .++...-+...++.+..+...+-
T Consensus 57 ~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~ 136 (1266)
T KOG1525|consen 57 FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLE 136 (1266)
T ss_pred HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeecc
Confidence 4688999999999999999998876552 122223333222 22 23333344555555655541111
Q ss_pred -CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc
Q 016814 69 -PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 145 (382)
Q Consensus 69 -~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 145 (382)
.+....++...+...+.++.+.--......+..+..... +......++.-+..--.|....-+..+-..+...+..+
T Consensus 137 d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~ 216 (1266)
T KOG1525|consen 137 DCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNL 216 (1266)
T ss_pred chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhh
Confidence 122234455666666655554433333333333322111 11122222222222234444444555544444444333
Q ss_pred ChHhHHHhhHHHHHHhhc-CC--ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814 146 GKDATIEQLLPIFLSLLK-DE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 222 (382)
Q Consensus 146 ~~~~~~~~l~~~l~~~l~-d~--~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 222 (382)
. +.+-.++...+. +. ...++.....-+-.+... .++.+ ..++|.|..-+..++..+|..+...++.+...
T Consensus 217 ~-----~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~-~p~ll-~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~ 289 (1266)
T KOG1525|consen 217 E-----DTIANFLNSCLTEYKSRQSSLKIKYHELILELWRI-APQLL-LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSD 289 (1266)
T ss_pred c-----hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHh-hHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 2 233333333322 11 123333333333333322 22333 67889998888999999999999999999876
Q ss_pred hchhhh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814 223 LGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 300 (382)
Q Consensus 223 ~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 300 (382)
.+...+ .+.+...+...+.|.+.+||...+++.....-....-.-...+...+.....|.+.++|..++-...... .
T Consensus 290 ~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~-~ 368 (1266)
T KOG1525|consen 290 KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVM-K 368 (1266)
T ss_pred chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehh-H
Confidence 554444 3456777778889999999999999988887653221112223334444444544444443321111111 1
Q ss_pred cChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814 301 MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 301 ~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 339 (382)
+... +...++..+...+.|..+.||..|+..|.+++..
T Consensus 369 ~~l~-~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 369 FKLV-YIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhh-hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 1222666677788899999999999999999985
No 134
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.11 E-value=0.0069 Score=63.56 Aligned_cols=304 Identities=12% Similarity=0.108 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHhccCh------hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc-c-----cccchHHHHH
Q 016814 14 RLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-P-----TRMDLVPAYV 81 (382)
Q Consensus 14 R~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~-----~~~~ll~~l~ 81 (382)
|...++-+..++.+... ..+|..+-+.+.+...+++..++..++..|.+++..+-+. . +..+++..|.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 66666667776665433 3445556666666555667889999999999998766542 2 2234666665
Q ss_pred Hhc-CCCcHHHHHHHHHHHHHHHHhhCHHH--HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc-cC---h--HhHHH
Q 016814 82 RLL-RDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-LG---K--DATIE 152 (382)
Q Consensus 82 ~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~---~--~~~~~ 152 (382)
..+ +..+.+||+..++++.++....+... -...++..+.....|.++.+-..+...+..+... ++ . .....
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence 544 44568999999999999887655431 0124556666666777777777777777665432 11 1 12334
Q ss_pred hhHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhh-----------------------------------chhhHhhhHHHH
Q 016814 153 QLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI-----------------------------------GIDLLSQSLLPA 196 (382)
Q Consensus 153 ~l~~~l~~~l~d~-~~~vr~~~~~~l~~~~~~~-----------------------------------~~~~~~~~llp~ 196 (382)
.++..+.++.+.. +.++-..++..+..+...+ +.+......+|.
T Consensus 1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076 1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 5666666665433 2333333333333221111 001111233455
Q ss_pred HH---HHhcCCCchHHHHHHHHhHHHHhhhchh----hh----HHHHHHHHHHHhc----------------------cc
Q 016814 197 IV---ELAEDRHWRVRLAIIEYIPLLASQLGVG----FF----DDKLGALCMQWLQ----------------------DK 243 (382)
Q Consensus 197 l~---~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~----~~~l~~~l~~~l~----------------------d~ 243 (382)
+. .++.|+...||..++..|-.+....|.. .+ ...++|++..+-. +.
T Consensus 1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 44 4467899999999999988887766643 32 2345565543210 11
Q ss_pred hhHHHHHHHHHHHHHHHHhCh-----HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHH
Q 016814 244 VYSIRDAAANNLKRLAEEFGP-----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVI 315 (382)
Q Consensus 244 ~~~vr~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~ 315 (382)
+.++.+....++..++..+.. ..+.+.++..+...+..++..+-..+..++..+....|.. ..+.+++..+.
T Consensus 1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~ 1508 (1780)
T PLN03076 1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLK 1508 (1780)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 223455555666555554432 1133444445555566778888888888888887665543 34555555444
Q ss_pred hh
Q 016814 316 NA 317 (382)
Q Consensus 316 ~~ 317 (382)
..
T Consensus 1509 ~l 1510 (1780)
T PLN03076 1509 EA 1510 (1780)
T ss_pred HH
Confidence 43
No 135
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.10 E-value=0.00018 Score=67.92 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=83.1
Q ss_pred HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH---hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814 148 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 224 (382)
Q Consensus 148 ~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 224 (382)
+.+..++.|.+.+.++......|-....++..+...++.+.+ .+.++|.+.+.+.=++..+|....+.++.+....+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 445556666666665544555555555566555555444322 25666666666666666666666666665544333
Q ss_pred --hhhhHHHHHHHHHHHhccch---hHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 016814 225 --VGFFDDKLGALCMQWLQDKV---YSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAIS 295 (382)
Q Consensus 225 --~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 295 (382)
.....+.++|.+..+-.|++ ..||..|+++++.+.+..+.. .|+..++..+...+.|+..-+|..|+.+=+
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 12223456666666555544 566666666666666644432 245556666666666666666666655433
No 136
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.09 E-value=0.0023 Score=57.91 Aligned_cols=171 Identities=18% Similarity=0.099 Sum_probs=121.5
Q ss_pred HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc-hh
Q 016814 150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG 226 (382)
Q Consensus 150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~ 226 (382)
+.+.++..+......++..||..+++.+..+...+++ +.+.+.++..+.+-+-|..+.||..++.++..+-+.-+ ++
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 3455556666667778899999999999999988887 56667788888887889999999999999998865433 22
Q ss_pred hhHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhccccChh
Q 016814 227 FFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSE 304 (382)
Q Consensus 227 ~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~ 304 (382)
.+. ...+... -.||+.+||..|+..+.. ...-.|.+++...|-+. .-|.....++..++.....+
T Consensus 168 n~~---~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls 234 (885)
T COG5218 168 NRI---VNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS 234 (885)
T ss_pred HHH---HHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc
Confidence 222 2223332 368999999998876532 12345777788888774 44556778888887665543
Q ss_pred hhhhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQS 335 (382)
Q Consensus 305 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 335 (382)
..+.++ .+--.+.|....||.++..++..
T Consensus 235 -i~kri~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 235 -IDKRIL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred -ccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 333443 44457888888999999888754
No 137
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=98.07 E-value=0.0023 Score=55.31 Aligned_cols=165 Identities=13% Similarity=0.207 Sum_probs=109.9
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH------
Q 016814 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL------ 110 (382)
Q Consensus 37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~------ 110 (382)
+-.++....+.+++.+|..+++++|-.+- ++.+. ..+.++.+...++..+..||..|++++..+....|.+.
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCL-LDKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 33456678888999999999999997663 34333 34567788877766689999999999999988776441
Q ss_pred -----HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc--cccCh-HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 016814 111 -----AIQHILPCVKELSSDSSQHVRSALASVIMGMA--PLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182 (382)
Q Consensus 111 -----~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~--~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~ 182 (382)
....++..+.+.+.+.++.+|..+++.++.+. ..+.+ ......++-.+.+--..++..+|......+..++.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 12457788888888889999999999999864 34444 33334444333333334456677655555555543
Q ss_pred hhc--hhhHhhhHHHHHHHHhcC
Q 016814 183 VIG--IDLLSQSLLPAIVELAED 203 (382)
Q Consensus 183 ~~~--~~~~~~~llp~l~~~~~d 203 (382)
.-. .+.+.+.++|.+..+.+.
T Consensus 186 s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 186 SSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhC
Confidence 322 133345566777766543
No 138
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.07 E-value=0.0084 Score=55.09 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=99.9
Q ss_pred CchHHHHHHHHhHHHHhhh---chhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhh
Q 016814 205 HWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEM 278 (382)
Q Consensus 205 ~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~ 278 (382)
+...+.+++.++..++..+ ....-...+...+.+++.|++..|...+..++..++=.+|+ .+.....+..+.++
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 3445666666665554433 22222345666777888999999999999999999877775 34566788999999
Q ss_pred hcCcchHHHHHHHHHHHHhccccChhh---hhhhh-HHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814 279 INNPHYLYRMTILRAISLLAPVMGSEI---TCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 279 l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~~-l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 339 (382)
+.++...+|..+.+++-.+.-++..+. ...++ ...+..+.+|+.+.|...+.+.+..+...
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999999999886655431 22233 34567788999999999999998887643
No 139
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=98.06 E-value=0.0014 Score=56.62 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=108.7
Q ss_pred chHHHH-HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh----
Q 016814 75 DLVPAY-VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---- 149 (382)
Q Consensus 75 ~ll~~l-~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---- 149 (382)
.++..+ ...+.++++.||+.|++++|-++- ++++.. ...++.+...++..+..||..+++++..+....|.+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDKELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 344333 367788899999999999998754 333322 3456777777766689999999999998876666322
Q ss_pred -------HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh--hch-hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHH
Q 016814 150 -------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 219 (382)
Q Consensus 150 -------~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~--~~~-~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l 219 (382)
....+...+.+.+.+.+++++..+++.++++.-. +.. ..+...++-....-...++.+.|+.+...++.+
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 2356888999999999999999999999997533 222 222233332222222445667777777777776
Q ss_pred Hhhhc--hhhhHHHHHHHHHHHhcc
Q 016814 220 ASQLG--VGFFDDKLGALCMQWLQD 242 (382)
Q Consensus 220 ~~~~~--~~~~~~~l~~~l~~~l~d 242 (382)
+..-. ...+.+.++|.+..+...
T Consensus 184 ~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 184 ASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 64332 233445566666655543
No 140
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.04 E-value=8.7e-05 Score=69.97 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh--
Q 016814 229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-- 303 (382)
Q Consensus 229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-- 303 (382)
...++|.+.+........+|..-..++..+..+.+.+. ....++|.+++.+.=++..+|..+..++..+....+.
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 34567777776665566667777777777777666543 3456777777777777777777777777776544442
Q ss_pred hhhhhhhHHHHHhhccCCC---ccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 304 EITCSRLLPVVINASKDRV---PNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 304 ~~~~~~~l~~l~~~l~d~~---~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
......++|.++..-.|.+ -.||..|++.|+.+.+..... .+...++.++.+.+.|+..-||..|.++=+.+..
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 2466777777777766655 467777777777777654432 4667777777777777777777777776555543
No 141
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.012 Score=55.24 Aligned_cols=288 Identities=15% Similarity=0.165 Sum_probs=177.5
Q ss_pred hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhC------Ccc------------
Q 016814 11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG------PEP------------ 71 (382)
Q Consensus 11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~------~~~------------ 71 (382)
..=|+.|++++..+++.....-....+-|++..+-.|- |+..-..+.+.+..+...-. ...
T Consensus 37 ~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~ 116 (970)
T KOG0946|consen 37 LEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQ 116 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHH
Confidence 35589999999999997765444455556655555553 56666777777766654332 000
Q ss_pred --cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH-----HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814 72 --TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-----AIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 144 (382)
Q Consensus 72 --~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~-----~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 144 (382)
..+..+..++..+...+..||..+++.+.++..+-+.+. ..+.-+..++.++.|....+|..++..+..+.+.
T Consensus 117 fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 117 FIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD 196 (970)
T ss_pred HHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc
Confidence 013467788888888899999999999999999888772 1233456778899999999999999999999876
Q ss_pred cChH---hHHHhhHHHHHHhhcCC----ChHHHHHHHHhhHHhhhhhchh--hH-hhhHHHHHHHHh-----cCC---Cc
Q 016814 145 LGKD---ATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGID--LL-SQSLLPAIVELA-----EDR---HW 206 (382)
Q Consensus 145 ~~~~---~~~~~l~~~l~~~l~d~----~~~vr~~~~~~l~~~~~~~~~~--~~-~~~llp~l~~~~-----~d~---~~ 206 (382)
.+.- ...+.++..+..++..+ ..-|-..|+..+-.+.+.-... .| ....+|.+..++ .|. .|
T Consensus 197 n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W 276 (970)
T KOG0946|consen 197 NSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGW 276 (970)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccc
Confidence 5531 12355555555555542 1246666766666665543221 11 134667776554 343 46
Q ss_pred hH-HHH-HHHHhHHHHhhhchh------------hhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHhCh--HHH-
Q 016814 207 RV-RLA-IIEYIPLLASQLGVG------------FFDDKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEFGP--EWA- 267 (382)
Q Consensus 207 ~v-r~~-~~~~l~~l~~~~~~~------------~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~--~~~- 267 (382)
.. |.. +...+..+-..+.|. .....++..+-..+.++ ...|+..++..++.++..... +.|
T Consensus 277 ~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~ 356 (970)
T KOG0946|consen 277 STQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFA 356 (970)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHh
Confidence 43 222 222222222222211 11234555555555544 567899888888888753211 111
Q ss_pred ----------HhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhc
Q 016814 268 ----------MQHITPQVLEMINNPH-YLYRMTILRAISLLA 298 (382)
Q Consensus 268 ----------~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~ 298 (382)
+..++-.++.++.... +..|.+.++++..+.
T Consensus 357 ~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 357 DVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred hccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 2234445566666555 789999999998764
No 142
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.013 Score=59.28 Aligned_cols=335 Identities=13% Similarity=0.108 Sum_probs=169.8
Q ss_pred hhhhhhhhhhh-----hccCCCHHHHHHHHHHHHHHHHHhCCcc-cc----cchHHHHH---HhcCCCc-HH--HHHHHH
Q 016814 33 CVAHILPVIVN-----FSQDKSWRVRYMVANQLYELCEAVGPEP-TR----MDLVPAYV---RLLRDNE-AE--VRIAAA 96 (382)
Q Consensus 33 ~~~~ll~~l~~-----~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~----~~ll~~l~---~~l~d~~-~~--VR~~a~ 96 (382)
....+.|+... +++++|-.||...+-|+..|.....++. +. ..+...++ ..+.|.. |. -+-.-+
T Consensus 42 ~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~ll 121 (1266)
T KOG1525|consen 42 DLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLL 121 (1266)
T ss_pred hHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHH
Confidence 34456665554 3467888999999999999998887642 22 12333332 3445543 22 233333
Q ss_pred HHHHHHHHh--h---CHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHH-HHHhhcC---CCh
Q 016814 97 GKVTKFCRI--L---NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI-FLSLLKD---EFP 167 (382)
Q Consensus 97 ~~l~~l~~~--~---~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~-l~~~l~d---~~~ 167 (382)
+.+..+.-. + ..+.....+...+..+..+..+.--......+..+....+ .....++.. +.++++. ..+
T Consensus 122 etl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d--~v~~e~L~~ll~~lv~~~~~~~~ 199 (1266)
T KOG1525|consen 122 ETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEED--TVQSELLDVLLENLVKPGRDTIK 199 (1266)
T ss_pred HHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhccCCCCccH
Confidence 444333211 1 2234444555666666654444222223333333322211 122333333 3344433 222
Q ss_pred HHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHH
Q 016814 168 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247 (382)
Q Consensus 168 ~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 247 (382)
.-+..+-..+...+..+..+ +.+.+...+.... ...-.++....+.+-.+-. ..++. .-.++|.+..-|...+..+
T Consensus 200 ~a~~la~~li~~~a~~~~~~-i~~f~~~~~~~~~-s~~~~~~~~~he~i~~L~~-~~p~l-l~~vip~l~~eL~se~~~~ 275 (1266)
T KOG1525|consen 200 EADKLASDLIERCADNLEDT-IANFLNSCLTEYK-SRQSSLKIKYHELILELWR-IAPQL-LLAVIPQLEFELLSEQEEV 275 (1266)
T ss_pred HHHHHHHHHHHHhhhhhchh-HHHHHHHHHhhcc-ccccchhhHHHHHHHHHHH-hhHHH-HHHHHHHHHHHHhcchHHH
Confidence 33333333333333322211 1122222222111 0111222333333333222 11222 2357788888888899999
Q ss_pred HHHHHHHHHHHHHHhChHHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhh-hhHHHHHhhccCCCcc
Q 016814 248 RDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS-RLLPVVINASKDRVPN 324 (382)
Q Consensus 248 r~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~l~~l~~~l~d~~~~ 324 (382)
|..|...+|.+....+.... ...+...++..+.|.+..+|..++.......-+-+ +.... .+.-.+.....| +.
T Consensus 276 Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~-~~~~~~~~~~~l~~~~~D--~~ 352 (1266)
T KOG1525|consen 276 RLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP-SIAKASTILLALRERDLD--ED 352 (1266)
T ss_pred HHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc-hhhhHHHHHHHHHhhcCC--hh
Confidence 99999999999876544333 34577778888899999999999999988653322 11111 111222223344 44
Q ss_pred HHHHHHHHHHHHh-hhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 325 IKFNVAKVLQSLI-PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 325 vR~~a~~~l~~i~-~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
+|....-++.... ..+.-..... ++..+.+.+.|..+.||..|...+..+..
T Consensus 353 ~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 353 VRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4433222221110 0111112223 67777778899999999999999998877
No 143
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.03 E-value=8.5e-06 Score=43.43 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=26.3
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHHHH
Q 016814 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEA 66 (382)
Q Consensus 37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~ 66 (382)
++|.+.++++|++|+||.+++.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999864
No 144
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.4e-05 Score=68.17 Aligned_cols=152 Identities=17% Similarity=0.119 Sum_probs=85.6
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 81 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 81 (382)
|.+|+.|.++..|-..+-.++..-..-+.......++|+ ..+|.+..||.+|+-+||-+|- .+ ..+++-.+
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~--~D----~~~lv~tv 591 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCC--DD----RDLLVGTV 591 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeEe--cC----cchhhHHH
Confidence 446677777777766665555444434443333434332 3567777777777777776552 11 12345555
Q ss_pred HhcCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHH
Q 016814 82 RLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIF 158 (382)
Q Consensus 82 ~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l 158 (382)
+++.+ .++.||...+-+|+-.+..-+.. ..+..+..+..|++..||++++-+++-+.-...++. ....+...+
T Consensus 592 elLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f 667 (926)
T COG5116 592 ELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKF 667 (926)
T ss_pred HHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHH
Confidence 54443 45777777777777666554443 234556666777777777777777766553333222 123445555
Q ss_pred HHhhcCCC
Q 016814 159 LSLLKDEF 166 (382)
Q Consensus 159 ~~~l~d~~ 166 (382)
.+.+.|..
T Consensus 668 ~~vI~~Kh 675 (926)
T COG5116 668 NRVIVDKH 675 (926)
T ss_pred HHHHhhhh
Confidence 55555543
No 145
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.0036 Score=59.04 Aligned_cols=187 Identities=16% Similarity=0.167 Sum_probs=122.9
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc-----ccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCHH-
Q 016814 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-----RMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPE- 109 (382)
Q Consensus 37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-----~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~- 109 (382)
+-.++..+-...|+.....++..|-++.. ++.+.. .+.++|.++.+++++ +.++...|+++|..+++.++..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 33334444344455555444444433332 233322 245899999999886 5899999999999999998765
Q ss_pred --HHHHhhhHhhhh-hcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch
Q 016814 110 --LAIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 186 (382)
Q Consensus 110 --~~~~~il~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~ 186 (382)
.+-...+|.+.+ ++.=+--.|-+.++.++..+...-+.......-+-....++.==+-.+++.++......++.+.+
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 222357787776 33444557888999999999877776554322222222222111345666777777778888877
Q ss_pred hhH--hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814 187 DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 224 (382)
Q Consensus 187 ~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 224 (382)
|.+ .-..+|.|..++...+.+.-...+-++..++..+.
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 755 34568999999998888888888889988888764
No 146
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.95 E-value=0.00049 Score=67.23 Aligned_cols=181 Identities=12% Similarity=0.077 Sum_probs=118.1
Q ss_pred HHHhhcCC-ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--hhhhHHHHHH
Q 016814 158 FLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGA 234 (382)
Q Consensus 158 l~~~l~d~-~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~ 234 (382)
+.+++.|+ ...||..++++++.+........+ ...+..+.+++..++|++|...+..+.+...... -..+...+++
T Consensus 133 f~dfisd~vvapVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~ 211 (1549)
T KOG0392|consen 133 FGDFISDNVVAPVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLD 211 (1549)
T ss_pred hcccccccchhhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 368999999999999988877666 7778888899999999999988888776655222 1233456788
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHhCh---H---HHHhhhHHHHHhhhc--CcchHHHHHHHHHHHHh-ccccChh-
Q 016814 235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGP---E---WAMQHITPQVLEMIN--NPHYLYRMTILRAISLL-APVMGSE- 304 (382)
Q Consensus 235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~l~~~l~~~l~--~~~~~~r~~a~~~l~~l-~~~~~~~- 304 (382)
.+...+.|.+..||..|++.+..+...... + .....+...+.++.. ......|.-....+... ...+...
T Consensus 212 ~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~ 291 (1549)
T KOG0392|consen 212 FVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQ 291 (1549)
T ss_pred HHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHh
Confidence 888999999999999999998888776521 1 111222222222221 11122333322222221 1111111
Q ss_pred hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 305 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 339 (382)
.....+.|.++.++.+....+|.++++.+..+.+.
T Consensus 292 n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 292 NLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12246788888889888899999999999888764
No 147
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.92 E-value=0.0028 Score=61.07 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=97.6
Q ss_pred hhHHHHHHHHhcC----CCchHHHHHHHHhHHHHhhhchh----------------hhHHHHHHHHHHHhccchhHHHHH
Q 016814 191 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLQDKVYSIRDA 250 (382)
Q Consensus 191 ~~llp~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~ 250 (382)
..++..+..+++. ++..++..++-.++.+....-.. .+.+.+...+.......+.+.+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 3444545555443 34567888888888776544222 233445555555555667788889
Q ss_pred HHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc---chHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHH
Q 016814 251 AANNLKRLAEEFGPEWAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF 327 (382)
Q Consensus 251 a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~ 327 (382)
++++||.+.. ...++.+...+.+. ...+|.+|++++..+...+.. ...+.++|.+.+--. .+++|.
T Consensus 510 ~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-~v~~~l~~I~~n~~e--~~EvRi 578 (618)
T PF01347_consen 510 YLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-KVREILLPIFMNTTE--DPEVRI 578 (618)
T ss_dssp HHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-HHHHHHHHHHH-TTS---HHHHH
T ss_pred HHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-HHHHHHHHHhcCCCC--ChhHHH
Confidence 9999988753 34677777777666 578999999999988654433 345555555554333 367999
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHHHHHH-hcCCCCccHHhHHHHHH
Q 016814 328 NVAKVLQSLIPIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQAI 372 (382)
Q Consensus 328 ~a~~~l~~i~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~al 372 (382)
+|...|-..-.. ..++..+.. +-.|++.+|+......|
T Consensus 579 aA~~~lm~~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 579 AAYLILMRCNPS-------PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHT----------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-------HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 998766553221 123333333 56789999988877665
No 148
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.91 E-value=0.0029 Score=55.99 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc------CcchHHHHHHHHHHHHhcccc-----C----------
Q 016814 244 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVM-----G---------- 302 (382)
Q Consensus 244 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~-----~---------- 302 (382)
....|.+|...+..+++..+.+. .+.+...+...+. ..+|+-+.+|+..++.++... |
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 35578889999999998775432 2222233333332 356999999999999997543 1
Q ss_pred hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHH
Q 016814 303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 372 (382)
Q Consensus 303 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al 372 (382)
.+.+.++++|.+. .-.+..|-+|..|++.+..+...+..+ ....++|.+...+.+++.-|+.-|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1235567777776 333556779999999999999988765 4567999999999999999999888775
No 149
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.90 E-value=0.0043 Score=59.37 Aligned_cols=210 Identities=14% Similarity=0.092 Sum_probs=129.2
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHH
Q 016814 153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 232 (382)
Q Consensus 153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 232 (382)
.+..++...+-|+.+.||..++.++..+.+..+.- ....++..+.....|+...++.++...+..-......+.....+
T Consensus 472 ~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~-~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~ 550 (1529)
T KOG0413|consen 472 VLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHR-EAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDL 550 (1529)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-chHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhh
Confidence 45567777788889999999999999887765432 22455555555555555666644444332211111111111111
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhhhhhhhH
Q 016814 233 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLL 311 (382)
Q Consensus 233 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l 311 (382)
+---.++..|... .+.. -|...+.+.++-.+...++ |....+|.+++..+......+..+..++..+
T Consensus 551 l~~~~~ii~d~~~-----------~~~~-~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L 618 (1529)
T KOG0413|consen 551 LLDEQQIIQDFKL-----------KLMN-KGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVL 618 (1529)
T ss_pred cCcchhhhhhcch-----------hhhh-ccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHH
Confidence 1111111122111 1111 1222344556667777776 6667888999998888888888776666767
Q ss_pred HHHHhhccCCCccHHHHHHHHHHHHhhhhh-HHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814 312 PVVINASKDRVPNIKFNVAKVLQSLIPIVD-QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 312 ~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~-~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 375 (382)
-.+-..+.|+...||..++.+|+.+...-. --.+...++..+..+++|.+..|...|.+.+..+
T Consensus 619 ~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 619 SILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 777778889888899999999988754211 1135678888888888898888888887754443
No 150
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.88 E-value=0.033 Score=58.75 Aligned_cols=290 Identities=11% Similarity=0.069 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHhCCc--cccc----chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-----HHHHhhhHhh
Q 016814 52 VRYMVANQLYELCEAVGPE--PTRM----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-----LAIQHILPCV 119 (382)
Q Consensus 52 vR~~a~~~l~~l~~~~~~~--~~~~----~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~-~~~-----~~~~~il~~l 119 (382)
-|...+..|..++.+--.. ..+. .+-+.+.+...+++..|+..|+..|.+++..+ ..+ .+.+.++..+
T Consensus 1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 3677777777777544332 2223 35555666555667789999999998887654 222 2334566777
Q ss_pred hhhc-CCCchHHHHHHHHHHHhhccccChHhHH--HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh-h---c---hhhH
Q 016814 120 KELS-SDSSQHVRSALASVIMGMAPLLGKDATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-I---G---IDLL 189 (382)
Q Consensus 120 ~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~-~---~---~~~~ 189 (382)
...+ ...+..||+..++++..+....+..... +.++.++.....++++.+-..+.+.+..+... + . .+.+
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 6644 4566799999999999887655432211 56777777777788888877787777766432 1 1 2333
Q ss_pred hhhHHHHHHHHhcCC-CchHHHHHHHHhHHHHhhh-----------------------------------chhhhHHHHH
Q 016814 190 SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL-----------------------------------GVGFFDDKLG 233 (382)
Q Consensus 190 ~~~llp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~-----------------------------------~~~~~~~~l~ 233 (382)
..++..+.++.+.. +.++-..++..+..++..+ +.+......+
T Consensus 1268 -~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~ 1346 (1780)
T PLN03076 1268 -TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWF 1346 (1780)
T ss_pred -HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 44555555555433 2334344444444332221 0011112345
Q ss_pred HHHH---HHhccchhHHHHHHHHHHHHHHHHhChH----H----HHhhhHHHHHhhhc----------------------
Q 016814 234 ALCM---QWLQDKVYSIRDAAANNLKRLAEEFGPE----W----AMQHITPQVLEMIN---------------------- 280 (382)
Q Consensus 234 ~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~----~~~~l~~~l~~~l~---------------------- 280 (382)
|++. ....|+..+||..|+..+-.+...+|.. + +...++|.+...-.
T Consensus 1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~ 1426 (1780)
T PLN03076 1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGEL 1426 (1780)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccch
Confidence 5554 4467999999999999999988887753 2 33445555433110
Q ss_pred CcchHHHHHHHHHHHHhccccChh-----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814 281 NPHYLYRMTILRAISLLAPVMGSE-----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 281 ~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
+.+....++...++..++..+..- .....++..+..+...++..+-.....+|..+....|.
T Consensus 1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 001113566666776666554432 23344455555566677787777888888888766554
No 151
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0021 Score=53.47 Aligned_cols=136 Identities=12% Similarity=0.163 Sum_probs=65.0
Q ss_pred HhcCCCchHHHHHHHHhHHHHhhhchhhhH---HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH--HhhhHHH
Q 016814 200 LAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQ 274 (382)
Q Consensus 200 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~ 274 (382)
.+.+++|.....++..+..++..-. +... ..++..+.+-+++....|-.+|+.+++.+.+.++.... .+.++..
T Consensus 96 ~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~ 174 (334)
T KOG2933|consen 96 KLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQ 174 (334)
T ss_pred HhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555554222 2222 22333444445555566666666666666655543211 1112222
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 275 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 340 (382)
++..-..++..+|+.|-.++..+.....+. .+++.+..++...++.+|..++..+......+
T Consensus 175 Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 175 LLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence 222222334556666666666655544443 34444444455555556655555554444433
No 152
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0012 Score=59.38 Aligned_cols=247 Identities=11% Similarity=0.057 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcC-CCh
Q 016814 89 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFP 167 (382)
Q Consensus 89 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~ 167 (382)
+.+...++-.++-.. ++.. ...+...+++++...+...-+++...++-+.-..+. ...+.-+.....+ +..
T Consensus 425 ~~l~yG~~LGiGL~~--MgSa--n~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s----~eai~dm~tya~ETqhe 496 (926)
T COG5116 425 PELAYGVCLGIGLIN--MGSA--NREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWS----VEAIEDMRTYAGETQHE 496 (926)
T ss_pred HHHHHHHHhhhcchh--cccc--cHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCC----HHHHHHHHHHhcchhhh
Confidence 345555555444332 2221 135667778877766666666666666655432222 2222333333333 345
Q ss_pred HHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH-hccchhH
Q 016814 168 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYS 246 (382)
Q Consensus 168 ~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~ 246 (382)
.+.++..-.+..+. +|.+.. .-..+.+++.|.++-.|...+-.+..--..-|.. .++..+.+. .+|.+..
T Consensus 497 ~i~Rglgig~aLi~--ygrqe~---add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~avsD~nDD 567 (926)
T COG5116 497 RIKRGLGIGFALIL--YGRQEM---ADDYINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAVSDGNDD 567 (926)
T ss_pred hHHhhhhhhhhHhh--hhhHHH---HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeecccCchH
Confidence 56665555544432 233322 2335667778888888888877766543322332 233333333 7899999
Q ss_pred HHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccH
Q 016814 247 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI 325 (382)
Q Consensus 247 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~v 325 (382)
||.+|+-++|.++-. . ...++...+.+.+ .+..+|...+-+++..+...|.+ ..+..+-.+..|++.-|
T Consensus 568 VrRAAViAlGfvc~~--D----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfV 637 (926)
T COG5116 568 VRRAAVIALGFVCCD--D----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFV 637 (926)
T ss_pred HHHHHHHheeeeEec--C----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHH
Confidence 999999999987732 2 2356666666665 46999999999999988777754 23344556778999999
Q ss_pred HHHHHHHHHHHhhhhhHHH--HHHhHHHHHHHhcCCCCc
Q 016814 326 KFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPDV 362 (382)
Q Consensus 326 R~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~ 362 (382)
|++|+-+++.|.....++. ....|...+.+...|...
T Consensus 638 RQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 638 RQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 9999999999987665542 224555666666666544
No 153
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.0024 Score=62.35 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=123.6
Q ss_pred ChHhHHHhhHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc-CCCchHHHHHHHHhHHHH
Q 016814 146 GKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLA 220 (382)
Q Consensus 146 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~ 220 (382)
|+......+.|++.+.++. .+|+++.+|.-+++++.-. +. .|.+.-+|.+...+. .+++.+|..++-.++-++
T Consensus 912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa-~fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SA-EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hH-HHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 4445567888999999854 5699999999999998643 22 344677788877765 899999999999999887
Q ss_pred hhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814 221 SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 300 (382)
Q Consensus 221 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 300 (382)
-.++. . .+..-+.+...+.|++..||+.|+..+..++-+ ...-.+..++.+-..+.|++.++|..|-.++..++..
T Consensus 990 v~fpn-l-ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 990 VRFPN-L-IEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred hhccc-c-cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 65543 2 234667778889999999999999999998753 1111234566667778999999999999888888754
Q ss_pred cChhhhhhhhHHHHHhhccCC
Q 016814 301 MGSEITCSRLLPVVINASKDR 321 (382)
Q Consensus 301 ~~~~~~~~~~l~~l~~~l~d~ 321 (382)
-. ..-.++|-++..|.|+
T Consensus 1066 ~n---~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 GN---TIYNLLPDILSRLSNG 1083 (1251)
T ss_pred cc---chhhhchHHHHhhccC
Confidence 32 3345666666666665
No 154
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.74 E-value=0.022 Score=53.07 Aligned_cols=146 Identities=14% Similarity=0.223 Sum_probs=94.2
Q ss_pred hHHHHHHHHhcCC--CchHHHHHHHHh---HHHHhhhchhhhHHHHHHHHH----HHhc--------cchhHHHHHHHHH
Q 016814 192 SLLPAIVELAEDR--HWRVRLAIIEYI---PLLASQLGVGFFDDKLGALCM----QWLQ--------DKVYSIRDAAANN 254 (382)
Q Consensus 192 ~llp~l~~~~~d~--~~~vr~~~~~~l---~~l~~~~~~~~~~~~l~~~l~----~~l~--------d~~~~vr~~a~~~ 254 (382)
.++..+...+.++ +.+.|..+++.+ .......++.... .+-|.+. ..+. ..+...|..+.++
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~ 397 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET 397 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence 3344444444455 678888888888 7777777665443 3333333 2231 2456799999999
Q ss_pred HHHHHHHhChHH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhh-----hhhhHH-HHHhhccCCCccHHH
Q 016814 255 LKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT-----CSRLLP-VVINASKDRVPNIKF 327 (382)
Q Consensus 255 l~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~-----~~~~l~-~l~~~l~d~~~~vR~ 327 (382)
+|.+++....-. -.-.++..+++.+.++...+|.+.-++++.++..+....- ....+. .+.....+....+|.
T Consensus 398 lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~ 477 (501)
T PF13001_consen 398 LGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRY 477 (501)
T ss_pred HHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHH
Confidence 999998765422 1234667777777888899999999999999877664211 122222 222334455667898
Q ss_pred HHHHHHHHHhh
Q 016814 328 NVAKVLQSLIP 338 (382)
Q Consensus 328 ~a~~~l~~i~~ 338 (382)
.|++....+..
T Consensus 478 ~avk~an~~fp 488 (501)
T PF13001_consen 478 AAVKYANACFP 488 (501)
T ss_pred HHHHHHHHhCC
Confidence 88888877664
No 155
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.71 E-value=0.016 Score=51.40 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=88.8
Q ss_pred CchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc------cchhHHHHHHHHHHHHHHHHhC---------------
Q 016814 205 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ------DKVYSIRDAAANNLKRLAEEFG--------------- 263 (382)
Q Consensus 205 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~--------------- 263 (382)
....|.++...+..+++..+.... +.+...+...++ ..+|+-+.+|+..++.++....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 346788889999999887665432 233344444443 4578999999999999986541
Q ss_pred hHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHH
Q 016814 264 PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL 333 (382)
Q Consensus 264 ~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l 333 (382)
.+++...++|.+. --.+..+-+|..|++.+..+-..++.+ ....++|.+..++.+++.-|+.-|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1345667788776 223456889999999999998887765 6678999999999999999999888764
No 156
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.71 E-value=0.01 Score=56.64 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=85.2
Q ss_pred hhHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhch------hhHhhhHHHHHHHH----hcCCCchHHHHHHHHhHH
Q 016814 153 QLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVEL----AEDRHWRVRLAIIEYIPL 218 (382)
Q Consensus 153 ~l~~~l~~~l~d----~~~~vr~~~~~~l~~~~~~~~~------~~~~~~llp~l~~~----~~d~~~~vr~~~~~~l~~ 218 (382)
.++..+.+++++ .++.+|..+.-+++.+....-. ....+.++|.+.+. .++.+...+...++.|+.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 444455555543 4678899999888887653211 11123444444433 334455556666777765
Q ss_pred HHhhhchhhhHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC--cchHHHHHHHHH
Q 016814 219 LASQLGVGFFDDKLGALCMQWLQ---DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRA 293 (382)
Q Consensus 219 l~~~~~~~~~~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~ 293 (382)
+.. +..++.+...+. +.+..+|.+|+.++..++..... . +-+.++..+.| .+..+|.+|+..
T Consensus 473 ~g~--------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-~----v~~~l~~i~~n~~e~~EvRiaA~~~ 539 (574)
T smart00638 473 AGH--------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-K----VQEVLLPIYLNRAEPPEVRMAAVLV 539 (574)
T ss_pred cCC--------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-H----HHHHHHHHHcCCCCChHHHHHHHHH
Confidence 542 122223333332 34567888888888887764432 2 33344444444 346788888887
Q ss_pred HHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHH
Q 016814 294 ISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV 332 (382)
Q Consensus 294 l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~ 332 (382)
+...- +.......+.. ....|++.+|+......
T Consensus 540 lm~t~---P~~~~l~~ia~---~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 540 LMETK---PSVALLQRIAE---LLNKEPNLQVASFVYSH 572 (574)
T ss_pred HHhcC---CCHHHHHHHHH---HHhhcCcHHHHHHhHHh
Confidence 75532 11112222222 22346666676654443
No 157
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.0018 Score=62.35 Aligned_cols=205 Identities=17% Similarity=0.154 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHhccCh----hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC----cccccchHHHHHHhcC
Q 016814 14 RLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLR 85 (382)
Q Consensus 14 R~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~l~ 85 (382)
|..|+..|+.+.+ +++ -...--|.|++.++++.+..+.|...+-.-.+|.. +.+ +.++...-..+++.+.
T Consensus 487 RlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILA-vD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 487 RLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILA-VDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHh-cCchhHHHHHhccCceeEEEEec
Confidence 7778877777766 333 12234589999999999999999988888777764 222 1111111222333444
Q ss_pred C-C--cHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccChHhHH---HhhH
Q 016814 86 D-N--EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDATI---EQLL 155 (382)
Q Consensus 86 d-~--~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~ 155 (382)
+ + +++-|..|+-.|..+...+... .....++....+.++|. .|-.|.=++-+|+.+-+.+....+. ..--
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 4 2 3578999999999998875432 33345677777888884 7899999999999997766543322 3444
Q ss_pred HHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hh---------------HhhhHHH----HHHHHhcCCCchHHHHHH
Q 016814 156 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL---------------LSQSLLP----AIVELAEDRHWRVRLAII 213 (382)
Q Consensus 156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~~---------------~~~~llp----~l~~~~~d~~~~vr~~~~ 213 (382)
..+..++.|+.++||.+++-+|+.+...... +. ..+.+++ .+..+++|..+-||.+++
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 6667788999999999999999999875311 00 0122233 445556777777777777
Q ss_pred HHhHHHH
Q 016814 214 EYIPLLA 220 (382)
Q Consensus 214 ~~l~~l~ 220 (382)
..+..++
T Consensus 725 v~ls~~~ 731 (1387)
T KOG1517|consen 725 VALSHFV 731 (1387)
T ss_pred HHHHHHH
Confidence 7776654
No 158
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0012 Score=54.86 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=120.3
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 153 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 153 (382)
.+...+..+.+.+|.+..-++..+..+....... .....++..+.+-++.....|-.+++.+++.+.+.++.... +.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-QE 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 5666667778899999999999998887765433 23445666777778888889999999999999887775432 24
Q ss_pred hHHHHHHhhc---CCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh---
Q 016814 154 LLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--- 227 (382)
Q Consensus 154 l~~~l~~~l~---d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--- 227 (382)
+-..+..++. +.+.-||..+-++|..+.....+ ..+++.+...+.+.++++|..++.++......+|...
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 4444455443 34567999999999999888776 4556666666788899999999999988877666221
Q ss_pred -hHHHHHHHHHHHhccchhHHHHHH
Q 016814 228 -FDDKLGALCMQWLQDKVYSIRDAA 251 (382)
Q Consensus 228 -~~~~l~~~l~~~l~d~~~~vr~~a 251 (382)
+...+.+.+.+-+.|.-+..|++|
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a 268 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAA 268 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccch
Confidence 222344555555555555555443
No 159
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.095 Score=54.41 Aligned_cols=216 Identities=18% Similarity=0.122 Sum_probs=127.4
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhh-hhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccch---HHH
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV-IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL---VPA 79 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~-l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l---l~~ 79 (382)
..+...+|..|-.+.++++.++...+...+...+... +.++.+-.++..|..-.-++|-+-++.|.-...+++ +..
T Consensus 883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 3456678999999999999999988776555555544 445555667788888888999998888864433333 446
Q ss_pred HHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHH--HHHhhhHhhhh-hcCCC--chHHHHHHHHHHH------hhccccCh
Q 016814 80 YVRLLRDNE-AEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKE-LSSDS--SQHVRSALASVIM------GMAPLLGK 147 (382)
Q Consensus 80 l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~-~~~d~--~~~vr~~a~~~l~------~l~~~~~~ 147 (382)
+..+..|+. |.|+.-++.++.-+....++-. .....+..+.+ ++.++ ..+|+...-+.+. .+...+|+
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence 777778876 5899999999988876554431 11112222222 22222 2344444444444 34333332
Q ss_pred Hh-------HH----HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHh
Q 016814 148 DA-------TI----EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 216 (382)
Q Consensus 148 ~~-------~~----~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l 216 (382)
+. .. ...+-...-++..+++.+...+++.+-.+.-+-+...-.+.+++.+..++.....-.|.....++
T Consensus 1043 eL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~cl 1122 (2067)
T KOG1822|consen 1043 ELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCL 1122 (2067)
T ss_pred ccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhh
Confidence 21 00 11111111123445777888888877776655554433366677777766665555555544444
Q ss_pred HHH
Q 016814 217 PLL 219 (382)
Q Consensus 217 ~~l 219 (382)
.++
T Consensus 1123 rql 1125 (2067)
T KOG1822|consen 1123 RQL 1125 (2067)
T ss_pred hHH
Confidence 443
No 160
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.025 Score=55.56 Aligned_cols=231 Identities=14% Similarity=0.117 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHhhCHH------HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhc
Q 016814 90 EVRIAAAGKVTKFCRILNPE------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK 163 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~~~------~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 163 (382)
.+|..-...+..+...+..+ .....++..+..+...+.-.+|..+--+...+.. .++....++.+
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt---------~Lv~va~~Ls~ 240 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMT---------ALVSVALNLSS 240 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 37777888888887776652 2334455555555555555677777555444432 12222222221
Q ss_pred C-------------CChHHHHHHHHhhHH-hhhhhchhhHhhhHHHHHHHH-----hcCCCchHHHHHHHHhHHHHhhhc
Q 016814 164 D-------------EFPDVRLNIISKLDQ-VNQVIGIDLLSQSLLPAIVEL-----AEDRHWRVRLAIIEYIPLLASQLG 224 (382)
Q Consensus 164 d-------------~~~~vr~~~~~~l~~-~~~~~~~~~~~~~llp~l~~~-----~~d~~~~vr~~~~~~l~~l~~~~~ 224 (382)
. ....-|. -+..+-. ....-+...-...++..+... ..|-.+.+|..+++.|+..+..++
T Consensus 241 ~~~~tskQleaEr~k~r~~ra-rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP 319 (1048)
T KOG2011|consen 241 HNDKTSKQLEAERNKSRGNRA-RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYP 319 (1048)
T ss_pred hhHHHHHHHHHHhcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhcc
Confidence 0 0111111 1111111 111111111113344433332 267889999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh---Ch-HHHHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhcc
Q 016814 225 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GP-EWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAP 299 (382)
Q Consensus 225 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---~~-~~~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~ 299 (382)
..++....+..+...|.|.+..||...++++..+.+.- +. +.|.+.+-..++++. .|-+..||...+..+.....
T Consensus 320 ~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~ 399 (1048)
T KOG2011|consen 320 EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS 399 (1048)
T ss_pred HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998862 22 345666667777776 55667888888777666532
Q ss_pred --ccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814 300 --VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 335 (382)
Q Consensus 300 --~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 335 (382)
.+..+ =+-.+..+.-|.++.++.+|...+-.
T Consensus 400 ~g~L~d~-----di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 400 SGLLSDK-----DILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred ccccChh-----HHHHHHHHHhccCcchHHHHHHHHHH
Confidence 22222 22345667778889998888877643
No 161
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.61 E-value=0.01 Score=57.30 Aligned_cols=250 Identities=16% Similarity=0.145 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchH
Q 016814 51 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQH 129 (382)
Q Consensus 51 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~ 129 (382)
.+.......+..+...+..-.. ..+.....+.... .....|...++++...+. . ..+..+.+++......
T Consensus 340 ~~~~~~~~~f~~Lv~~lr~l~~-~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT----~----~av~~i~~~I~~~~~~ 410 (618)
T PF01347_consen 340 PVSKETLSKFSRLVRLLRTLSY-EDLEELYKQLKSKSKKEQARKIFLDALPQAGT----N----PAVKFIKDLIKSKKLT 410 (618)
T ss_dssp S--TTHHHHHHHHHHHHTTS-H-HHHHHHHHHHTTS---HHHHHHHHHHHHHH-S----H----HHHHHHHHHHHTT-S-
T ss_pred ccchhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHcCC----H----HHHHHHHHHHHcCCCC
Confidence 3444444446666655554332 2233333222222 246677777777766443 2 1123333333322211
Q ss_pred HHHHHHHHHHhhcccc-ChHhHHHhhHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhchh----------------h
Q 016814 130 VRSALASVIMGMAPLL-GKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGID----------------L 188 (382)
Q Consensus 130 vr~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~d----~~~~vr~~~~~~l~~~~~~~~~~----------------~ 188 (382)
- ..+...+..+.... .+ ...++..+..+++. .++.++..++-+++.+....-.. .
T Consensus 411 ~-~ea~~~l~~l~~~~~~P---t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~ 486 (618)
T PF01347_consen 411 D-DEAAQLLASLPFHVRRP---TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEK 486 (618)
T ss_dssp H-HHHHHHHHHHHHT--------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GG
T ss_pred H-HHHHHHHHHHHhhcCCC---CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHH
Confidence 1 12333333333222 11 12344444444432 46789999999988876542211 2
Q ss_pred HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHhChH
Q 016814 189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK---VYSIRDAAANNLKRLAEEFGPE 265 (382)
Q Consensus 189 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~ 265 (382)
+.+.+...+.......+...+..++++|+.+.. +..++.+...+.+. ...+|.+|+.++..+.... ++
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~ 557 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PE 557 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HH
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cH
Confidence 223344444444455666777888888887642 23455566666655 7889999999999885543 33
Q ss_pred HHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhccccChhhhhhhhHHHHHhh-ccCCCccHHHHHHHHH
Q 016814 266 WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINA-SKDRVPNIKFNVAKVL 333 (382)
Q Consensus 266 ~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~-l~d~~~~vR~~a~~~l 333 (382)
. +.+.++..+.|. +..+|.+|...+..-- +....... +... -.+++.+|+......|
T Consensus 558 ~----v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~---P~~~~l~~----i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 558 K----VREILLPIFMNTTEDPEVRIAAYLILMRCN---PSPSVLQR----IAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp H----HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------HHHHHH----HHHHHTT-S-HHHHHHHHHHH
T ss_pred H----HHHHHHHHhcCCCCChhHHHHHHHHHHhcC---CCHHHHHH----HHHHHhhCchHHHHHHHHHhc
Confidence 3 444444444443 4779999988886521 22222222 2333 3577777877665544
No 162
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.61 E-value=0.074 Score=51.07 Aligned_cols=241 Identities=15% Similarity=0.093 Sum_probs=151.1
Q ss_pred hHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhh--CHHHHHHhhhH-hhhhhcCCCchHHHHHHHHHHHhhccccChHhHH
Q 016814 76 LVPAYVRLL-RDNEAEVRIAAAGKVTKFCRIL--NPELAIQHILP-CVKELSSDSSQHVRSALASVIMGMAPLLGKDATI 151 (382)
Q Consensus 76 ll~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~--~~~~~~~~il~-~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 151 (382)
++..+...+ ....|..-..+..+++.+.+.. .+... ..++. .+..+..|..+.+|..+++++..+++.-.-..+.
T Consensus 450 l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~ 528 (1005)
T KOG2274|consen 450 LTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQ 528 (1005)
T ss_pred HHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccc
Confidence 343444433 3345665557888888777762 33322 23333 3444567888999999999999998443333455
Q ss_pred HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hHhhhHHHHHHHHh--cCCCchHHHHHHHHhHHHHh---hhc
Q 016814 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLAS---QLG 224 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~llp~l~~~~--~d~~~~vr~~~~~~l~~l~~---~~~ 224 (382)
+.++..+.++..+.+.+|-.....+++.+++.=+.. .....+.|.+..+. ..+++.|-..+-..+..+++ ..|
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 788888899999999999999999998887653322 22245666655443 23344554544445544443 444
Q ss_pred hhhhHHHHHHHHHHHhccch----hHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHH
Q 016814 225 VGFFDDKLGALCMQWLQDKV----YSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINN-PHYLYRMTILRAISL 296 (382)
Q Consensus 225 ~~~~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~ 296 (382)
+. ...++|.+.+.+.-+. ......++..+..++++-++ +.+....+|.+.+..-+ .+...-+.+-+|+..
T Consensus 609 ~m--~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra 686 (1005)
T KOG2274|consen 609 PM--QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRA 686 (1005)
T ss_pred ch--HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHH
Confidence 43 3568888888887666 55677788888888886554 23556677777765543 345677788888888
Q ss_pred hccccCh---------hhhhhhhHHHHHhhcc
Q 016814 297 LAPVMGS---------EITCSRLLPVVINASK 319 (382)
Q Consensus 297 l~~~~~~---------~~~~~~~l~~l~~~l~ 319 (382)
+...-.+ ..-...++..+-++|+
T Consensus 687 ~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd 718 (1005)
T KOG2274|consen 687 LISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD 718 (1005)
T ss_pred HHhcCHHHHHhhccCCCccHHHHHHHHHHHcC
Confidence 7654211 1112356666666664
No 163
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.57 E-value=0.018 Score=54.90 Aligned_cols=217 Identities=17% Similarity=0.182 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC--hHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCC-
Q 016814 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR- 204 (382)
Q Consensus 128 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~- 204 (382)
+..|.....++..... . .-+..+.+.+.... +.....++..+........ ..++..+..+++++
T Consensus 340 ~~~r~~~~Dal~~~GT----~----~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-----~~~l~~l~~l~~~~~ 406 (574)
T smart00638 340 KKARRIFLDAVAQAGT----P----PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-----EEILKALFELAESPE 406 (574)
T ss_pred HHHHHHHHHHHHhcCC----H----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHhcCcc
Confidence 5566666666665543 1 22333444443322 2222333333333322222 45566666666543
Q ss_pred ---CchHHHHHHHHhHHHHhhhch------hhhHHHHHHHHH----HHhccchhHHHHHHHHHHHHHHHHhChHHHHhhh
Q 016814 205 ---HWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCM----QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 271 (382)
Q Consensus 205 ---~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~----~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 271 (382)
+..+|..+.-.++.+...... ....+.+.+.+. ...++.+.+.+..++++||.+.. ......+
T Consensus 407 ~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----~~~i~~l 482 (574)
T smart00638 407 VQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----PSSIKVL 482 (574)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----hhHHHHH
Confidence 456888888888888764321 111234444444 44445566677888888886543 2222223
Q ss_pred HHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 016814 272 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRP 351 (382)
Q Consensus 272 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~ 351 (382)
.|.+. .-.+....+|..|+.++..++...... ..+.+++.+.+- +..+++|.+|...|-..-.. ...+.
T Consensus 483 ~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n~--~e~~EvRiaA~~~lm~t~P~-------~~~l~ 551 (574)
T smart00638 483 EPYLE-GAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLNR--AEPPEVRMAAVLVLMETKPS-------VALLQ 551 (574)
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCC-------HHHHH
Confidence 33332 112334789999999999887655543 445555555432 34577999998887655321 12223
Q ss_pred HHH-HhcCCCCccHHhHHHHHH
Q 016814 352 CLV-ELTEDPDVDVRFFATQAI 372 (382)
Q Consensus 352 ~l~-~l~~d~~~~vr~~a~~al 372 (382)
.+. .+..|++.+|+......|
T Consensus 552 ~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 552 RIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHHhhcCcHHHHHHhHHhh
Confidence 333 356688899988776554
No 164
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.09 Score=50.37 Aligned_cols=363 Identities=10% Similarity=0.065 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCC-----HHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC
Q 016814 12 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 86 (382)
Q Consensus 12 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~-----~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d 86 (382)
..|+...+.+......++ +...+.+...+.+...|.+ |..-++.+-++..+++.+|.... .-+|.+++..-.
T Consensus 439 ~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~as 515 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhccc
Confidence 567777777777777666 4555666666667666555 77778888899999999988653 347777665532
Q ss_pred -----CcHHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHH
Q 016814 87 -----NEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIF 158 (382)
Q Consensus 87 -----~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l 158 (382)
.++..-..+...++.++..++.. ...+..+|.+...+..+.. -..+...+..+++....+. ..+.++...
T Consensus 516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~ 593 (982)
T KOG2022|consen 516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVC 593 (982)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHH
Confidence 36778888999999998887665 4456677888887754333 3345555777765444321 224555555
Q ss_pred HHhhcCC--ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHh---------cCCCchHHHHHHH---HhHHHHhhhc
Q 016814 159 LSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---------EDRHWRVRLAIIE---YIPLLASQLG 224 (382)
Q Consensus 159 ~~~l~d~--~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~---------~d~~~~vr~~~~~---~l~~l~~~~~ 224 (382)
.+.++.. .+..|....+++|.+.+...++...+.+...+..++ +-+++.-+...+- .++.+...+.
T Consensus 594 ~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~ 673 (982)
T KOG2022|consen 594 YEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLI 673 (982)
T ss_pred HHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 5555443 478899999999999888776655444433332221 1122222222222 3334433321
Q ss_pred -h---------------------hhhHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh-
Q 016814 225 -V---------------------GFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI- 279 (382)
Q Consensus 225 -~---------------------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l- 279 (382)
+ -.+..+++|.+.+.+. -.+..|-++++....+=....+.. |....+|.+..++
T Consensus 674 ~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~ 752 (982)
T KOG2022|consen 674 NKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIV 752 (982)
T ss_pred CCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHH
Confidence 1 0123445555555433 123344444444443333333333 3333444444333
Q ss_pred ---cCcchHH-HHHHHHHHHHh-ccccChh------hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH------
Q 016814 280 ---NNPHYLY-RMTILRAISLL-APVMGSE------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------ 342 (382)
Q Consensus 280 ---~~~~~~~-r~~a~~~l~~l-~~~~~~~------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~------ 342 (382)
..+-... -..++..+... .+.+++. .+.++.+-.+-+.--.+++++-......+..+.+....
T Consensus 753 r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~ 832 (982)
T KOG2022|consen 753 RFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSM 832 (982)
T ss_pred HhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccch
Confidence 2222111 11111111111 1112211 11112111111111133455666666666666654321
Q ss_pred HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 343 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 343 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
..+.+.+++.-..+++.|.+-.-.++.+.+..++..-+
T Consensus 833 ~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~ 870 (982)
T KOG2022|consen 833 LAFTSLILICAFILLNSPEPTTIRAASQFLTALATYAT 870 (982)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcc
Confidence 24567777777778888887766777777766655433
No 165
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.0038 Score=61.04 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=112.4
Q ss_pred hchhhhHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHh
Q 016814 223 LGVGFFDDKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLL 297 (382)
Q Consensus 223 ~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l 297 (382)
+|++.....+.|++...++. .+++++.+|.-+++++.- ++.+ |.+.-+|.++..++ .+++.+|..+.-+++.+
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~-fces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHH-HHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 46566667788999888843 468999999999999975 3333 45557788888886 78899999999999999
Q ss_pred ccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814 298 APVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 298 ~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 375 (382)
+-.++. ..+-..+.+...+.|+++.||.+|+-.|+.+... ...-....++.+..++.|++.++|..|-..+..+
T Consensus 989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 866654 4556677888999999999999999999887642 1122345567777788999999998887554443
No 166
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.22 Score=51.92 Aligned_cols=234 Identities=15% Similarity=0.170 Sum_probs=153.5
Q ss_pred hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcC-CChHHHHHHHHhhHHhhhhh
Q 016814 106 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVI 184 (382)
Q Consensus 106 ~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~~~~~l~~~~~~~ 184 (382)
.+++.+.......+...+..+++..|-.+..+++.++...+...+...+...+.+-+++ .++..|..-.-+++.+.++.
T Consensus 868 lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv 947 (2067)
T KOG1822|consen 868 LGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV 947 (2067)
T ss_pred cCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence 34555555566677778888999999999999999999988777665556555555554 56677777788888888776
Q ss_pred ch---hhHhhhHHHHHHHHhcCCCc-hHHHHHHHHhHHHHhhhchhhhH--HHHHHHHHHH-hccc--hhHHHHHHHHHH
Q 016814 185 GI---DLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQW-LQDK--VYSIRDAAANNL 255 (382)
Q Consensus 185 ~~---~~~~~~llp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~-l~d~--~~~vr~~a~~~l 255 (382)
|. ..-...-+..+..+..|++. .|+...+..+..+...-|+-+.. ..-+..+..+ +.++ ..+++.+--.++
T Consensus 948 gs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 948 GSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred cCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence 53 22213334566666677765 99999999999998877765422 2222233333 3333 345666655555
Q ss_pred H------HHHHHhChHH-----------HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc
Q 016814 256 K------RLAEEFGPEW-----------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 318 (382)
Q Consensus 256 ~------~~~~~~~~~~-----------~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l 318 (382)
. .+....|++. ++...+-.+.-.+.+++.-+..+++.++.++--.-+...-.+.+++.+...+
T Consensus 1028 ~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1028 NGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLL 1107 (2067)
T ss_pred ccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHh
Confidence 5 6666665531 2333333444445666788889999999998654444444567778888877
Q ss_pred cCCCccHHHHHHHHHHHHhhh
Q 016814 319 KDRVPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 319 ~d~~~~vR~~a~~~l~~i~~~ 339 (382)
....--.|......+.++...
T Consensus 1108 ~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1108 SSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred cchhhhhhhhHHhhhhHHhHH
Confidence 777666777777777666543
No 167
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.12 Score=48.65 Aligned_cols=303 Identities=14% Similarity=0.069 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHhccCh-----hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCC
Q 016814 13 VRLLAVEGCAALGKLLEP-----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN 87 (382)
Q Consensus 13 vR~~a~~~l~~l~~~~~~-----~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~ 87 (382)
-...|.+.+..+....++ ......+.+.+....+++.-..|..+|..++.+...+.......++.....++++++
T Consensus 432 q~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn 511 (970)
T COG5656 432 QAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNN 511 (970)
T ss_pred HHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcC
Confidence 344577777777663332 234556778888888999999999999999999888877766667788888899998
Q ss_pred cHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHH-Hhhcccc---ChHh---HHHhhHH
Q 016814 88 EAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVI-MGMAPLL---GKDA---TIEQLLP 156 (382)
Q Consensus 88 ~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l-~~l~~~~---~~~~---~~~~l~~ 156 (382)
+-.|+..|+.++.-+....... .+....+..+..+.++-+-.+-..+...+ +.+.+.+ +++. ..++++.
T Consensus 512 ~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlk 591 (970)
T COG5656 512 HLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLK 591 (970)
T ss_pred CcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHH
Confidence 8999999999998887654222 22233344444455554444333333222 2232222 2222 2244444
Q ss_pred HHHHhhcCC---ChH------HHHHHHHhhHHhhhhhchh-----hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH--
Q 016814 157 IFLSLLKDE---FPD------VRLNIISKLDQVNQVIGID-----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA-- 220 (382)
Q Consensus 157 ~l~~~l~d~---~~~------vr~~~~~~l~~~~~~~~~~-----~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~-- 220 (382)
+...++.++ +.. ...+.++.+..+.-.+... .....+.|.+.-.+++.....-..+++.+....
T Consensus 592 iaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~ 671 (970)
T COG5656 592 IAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFM 671 (970)
T ss_pred HHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH
Confidence 555555443 111 1222233333332222211 122456677776777666666666666655432
Q ss_pred -hhhchhhhHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHhChHH-----HHhhhHHHHHhhhcCcc--hHHHHHHH
Q 016814 221 -SQLGVGFFDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEFGPEW-----AMQHITPQVLEMINNPH--YLYRMTIL 291 (382)
Q Consensus 221 -~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~-----~~~~l~~~l~~~l~~~~--~~~r~~a~ 291 (382)
+.+. .....+...+.+.+.|+.. .--+.+..++..++..-+.+. +...+.......+.+.. -.-+..++
T Consensus 672 skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc 749 (970)
T COG5656 672 SKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVC 749 (970)
T ss_pred HHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHH
Confidence 1111 1223466666777777664 445667777888876543332 33333444444454443 35677888
Q ss_pred HHHHHhccccChhhhhhhhHHHHHhhc
Q 016814 292 RAISLLAPVMGSEITCSRLLPVVINAS 318 (382)
Q Consensus 292 ~~l~~l~~~~~~~~~~~~~l~~l~~~l 318 (382)
..+..++-+++.+ ...+-+|.+....
T Consensus 750 ~i~e~l~Ln~rd~-Ll~qy~plfi~va 775 (970)
T COG5656 750 RIIESLILNIRDE-LLSQYLPLFISVA 775 (970)
T ss_pred HHHHHHHHHccch-hHHhhhHHHHHHH
Confidence 8888887777654 3334555555443
No 168
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.37 E-value=0.0016 Score=50.24 Aligned_cols=137 Identities=11% Similarity=0.181 Sum_probs=83.7
Q ss_pred hhHHHHHHHHhc-CCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHHHHh--
Q 016814 191 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-----KVYSIRDAAANNLKRLAEEF-- 262 (382)
Q Consensus 191 ~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~-- 262 (382)
..+++.+..+++ +.+|.+|.++++.+|.+.. +++..+. .......+ .+........ .....
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k-----~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~ 77 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHK-----SIQKSLDSKSSENSNDESTDISL-----PMMGISP 77 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHh-----cccccCCccccccccccchhhHH-----hhccCCC
Confidence 567777777764 3468999999999988764 3332221 11111111 1111111111 11111
Q ss_pred -ChHHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 263 -GPEWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 263 -~~~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
..+++....+..++..++|++ ...+.+++.++..+.+..|.. .+..+++|.++..+.......|....+-|+.+..
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 235566677888888888886 445556777777666555543 6889999999998887777888888777777654
No 169
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=97.29 E-value=0.0059 Score=41.92 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=62.0
Q ss_pred HHHhcCCCchHHHHHHHHhHHHHhhhc-hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHH
Q 016814 198 VELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 276 (382)
Q Consensus 198 ~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 276 (382)
...+.|+...+|..++..+..+...-. .....+.++..+...++|++..|-.+|++.+..++...+. .++|.++
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L~ 83 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPILL 83 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHHH
Confidence 344578888888888888888887666 4444567888888889999999999999999998887643 4777777
Q ss_pred hhhcCcc
Q 016814 277 EMINNPH 283 (382)
Q Consensus 277 ~~l~~~~ 283 (382)
+.+.|.+
T Consensus 84 ~~y~~~~ 90 (92)
T PF10363_consen 84 DEYADPS 90 (92)
T ss_pred HHHhCcc
Confidence 7766543
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.04 Score=53.68 Aligned_cols=225 Identities=16% Similarity=0.123 Sum_probs=151.2
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH---hhC
Q 016814 35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR---ILN 107 (382)
Q Consensus 35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~---~~~ 107 (382)
++=+|++++.+-.+-. |.-|+..|+.... +|+-.+ .-.++|..+++++++-.+.|..-.-.-.++.. .+.
T Consensus 471 PeQLPiVLQVLLSQvH--RlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLSQVH--RLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred hHhcchHHHHHHHHHH--HHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhH
Confidence 3445555554433333 4445666666554 344211 12489999999999999999887766666543 344
Q ss_pred HHHHHHhhhHhhhhhcCC---CchHHHHHHHHHHHhhccccCh---HhHHHhhHHHHHHhhcCC-ChHHHHHHHHhhHHh
Q 016814 108 PELAIQHILPCVKELSSD---SSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQV 180 (382)
Q Consensus 108 ~~~~~~~il~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~~~~~l~~~ 180 (382)
.+.+++..-.++...+.+ -+++-|..++-.|..++..+.. ......++.+..+.++|. .+-.|..++-+|+.+
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 455555444455555554 2347788888889988876642 234467888888889885 799999999999999
Q ss_pred hhhhchhhHh---hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh----chh--hh------------HHHHHH----H
Q 016814 181 NQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL----GVG--FF------------DDKLGA----L 235 (382)
Q Consensus 181 ~~~~~~~~~~---~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~--~~------------~~~l~~----~ 235 (382)
.+.+....+. ...-..+..++.|+.++||.+++-+|+.+.... .+. .. .+.+++ .
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 8877654442 233455666778999999999999999998753 110 00 122233 4
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814 236 CMQWLQDKVYSIRDAAANNLKRLAEEF 262 (382)
Q Consensus 236 l~~~l~d~~~~vr~~a~~~l~~~~~~~ 262 (382)
+...++|.++-||...+.++..++...
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 566788999999999999998887644
No 171
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.17 Score=47.77 Aligned_cols=293 Identities=13% Similarity=0.183 Sum_probs=169.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcccc-cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh-hCHHH---H---HHhhhHhh
Q 016814 48 KSWRVRYMVANQLYELCEAVGPEPTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-LNPEL---A---IQHILPCV 119 (382)
Q Consensus 48 ~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~-~~~~~---~---~~~il~~l 119 (382)
.++.+-....++++....-..-.... ...++.+.+.++ ..++|.+|+.++..+... +.|-. . .+.....+
T Consensus 205 ~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lf 282 (980)
T KOG2021|consen 205 VNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELF 282 (980)
T ss_pred CCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 37788888888888777655443322 346888888877 688999999999887653 44331 1 11111222
Q ss_pred hhhcCC--CchHHHHHHHHHHHhhccccC--------------hHh---HHHhhHHHHHHhhcCCChHHHHHHHHhhHHh
Q 016814 120 KELSSD--SSQHVRSALASVIMGMAPLLG--------------KDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 180 (382)
Q Consensus 120 ~~~~~d--~~~~vr~~a~~~l~~l~~~~~--------------~~~---~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~ 180 (382)
-....| .++.+-+...+.+..++..+- ++. ....++|++.+.++++..+.-......+...
T Consensus 283 g~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdy 362 (980)
T KOG2021|consen 283 GYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDY 362 (980)
T ss_pred hhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 222233 556666666666666543221 011 1234678888888887777666655554443
Q ss_pred hhhhchhh------H--hhh-HHHHHHHHh------cCCC----------chHHHHHHHHhHHHHhhhchhhhHHHHHHH
Q 016814 181 NQVIGIDL------L--SQS-LLPAIVELA------EDRH----------WRVRLAIIEYIPLLASQLGVGFFDDKLGAL 235 (382)
Q Consensus 181 ~~~~~~~~------~--~~~-llp~l~~~~------~d~~----------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 235 (382)
...+.... . .+. ++-.+.+++ +|.+ ..+|..+-.....+. .+.++.+...+-..
T Consensus 363 l~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~s 441 (980)
T KOG2021|consen 363 LAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQS 441 (980)
T ss_pred HHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 33322111 0 122 223333333 2222 135555444444443 45666666555444
Q ss_pred HHHH---hccchhHHHHHHHHHHHHHHHHhChHH------------HHhhhHHHHHh--hhcCcchHHHHHHHHHHHHhc
Q 016814 236 CMQW---LQDKVYSIRDAAANNLKRLAEEFGPEW------------AMQHITPQVLE--MINNPHYLYRMTILRAISLLA 298 (382)
Q Consensus 236 l~~~---l~d~~~~vr~~a~~~l~~~~~~~~~~~------------~~~~l~~~l~~--~l~~~~~~~r~~a~~~l~~l~ 298 (382)
+... .+.++|..-+.|+..+-.+.+.+..+. .....++.++. ...+++..+.....+.+.+..
T Consensus 442 lS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~ 521 (980)
T KOG2021|consen 442 LSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYN 521 (980)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHH
Confidence 4443 346789999999999999988764321 12234444432 345667777777777777766
Q ss_pred cccChh-hhhhhhHHHHHh--hccCCCccHHHHHHHHHHHHhhhhhHH
Q 016814 299 PVMGSE-ITCSRLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIVDQS 343 (382)
Q Consensus 299 ~~~~~~-~~~~~~l~~l~~--~l~d~~~~vR~~a~~~l~~i~~~~~~~ 343 (382)
..+..+ .....++..++. ++.+.+..||..|...+..+.+.+..+
T Consensus 522 kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkq 569 (980)
T KOG2021|consen 522 KFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQ 569 (980)
T ss_pred HHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHH
Confidence 666644 233444444442 466778999999999999888776543
No 172
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.26 E-value=0.13 Score=46.22 Aligned_cols=290 Identities=13% Similarity=0.070 Sum_probs=138.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccChH--hH
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD--AT 150 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~ 150 (382)
...++.+++.+++-+...++..+..++..-. +......+...+...++.. +......++.++..+...-.-. ..
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 3444557777889999999999998875321 1123334455555555533 3455666778887776433311 12
Q ss_pred HHhhHHHHHHhhcCCC--hHHHHHHHHhhHHh--hhhhchhhHhhhHHHHHHHHhcCCC-chHHHHHHHHhHHHHhhhc-
Q 016814 151 IEQLLPIFLSLLKDEF--PDVRLNIISKLDQV--NQVIGIDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLG- 224 (382)
Q Consensus 151 ~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~~--~~~~~~~~~~~~llp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~- 224 (382)
....++.+.++++... .+..-.++-++-.+ ............++|.+.+++++.. .+|-+-++..+..+...-.
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 2335556665554322 23333333333222 1110001111357777777765433 3344444445555544211
Q ss_pred --------hhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHH-Hh---C-hHHHHhhhHHHHHhh-hcCcc-hHHH
Q 016814 225 --------VGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAE-EF---G-PEWAMQHITPQVLEM-INNPH-YLYR 287 (382)
Q Consensus 225 --------~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~-~~---~-~~~~~~~l~~~l~~~-l~~~~-~~~r 287 (382)
...+...+.+.+..+... .|+++.+. +..+....+ .+ . -+.|...+...-++. -.+.+ ..=|
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 111111233333333221 23344333 222222222 11 1 122222222111111 00111 1123
Q ss_pred HHHHHHHHHhccccChhhhhhhhHHHHHhhc-cCCCccHHHHHHHHHHHHhhhhh--HHHHH-HhHHHHHHHhcCCCCcc
Q 016814 288 MTILRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVD--QSMVE-KTIRPCLVELTEDPDVD 363 (382)
Q Consensus 288 ~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~--~~~~~-~~i~~~l~~l~~d~~~~ 363 (382)
+.+-.+- .+. -+++-.+...+ ++..+.+-..|+.=+|.+...++ ..... -.....+-++.+++|++
T Consensus 342 EN~~kf~--------~~~--~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~ 411 (429)
T cd00256 342 ENADRLN--------EKN--YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPN 411 (429)
T ss_pred HHHHHHH--------hcc--hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHH
Confidence 3332221 111 23444455555 34456677888888999988763 33332 23455566778889999
Q ss_pred HHhHHHHHHHHHHH
Q 016814 364 VRFFATQAIQSIDH 377 (382)
Q Consensus 364 vr~~a~~al~~~~~ 377 (382)
||..|..|++.+.-
T Consensus 412 Vr~eAL~avQklm~ 425 (429)
T cd00256 412 VRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 173
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.052 Score=46.59 Aligned_cols=174 Identities=14% Similarity=0.053 Sum_probs=105.9
Q ss_pred CCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HH-HHhhhHHHHHhh
Q 016814 204 RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EW-AMQHITPQVLEM 278 (382)
Q Consensus 204 ~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~-~~~~l~~~l~~~ 278 (382)
.+.+-+..++..|..++..+.... ..-..+..+...+++.+..+|..|+..++..+++-.+ +. +....++.++..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 345667777777877777664321 1112233344488999999999999999999887544 11 233456666666
Q ss_pred hcC-cchHHHHHHHHHHHHhccccChh--hh-hhhhHHHHHhhccC--CCccHHHHHHHHHHHHhhhhhH--HHHHH-hH
Q 016814 279 INN-PHYLYRMTILRAISLLAPVMGSE--IT-CSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ--SMVEK-TI 349 (382)
Q Consensus 279 l~~-~~~~~r~~a~~~l~~l~~~~~~~--~~-~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~i~~~~~~--~~~~~-~i 349 (382)
+.. +.-.+|..|+.+++.+.++..+- .| ...=...+...+.+ .+...+..++..++.+...... +.... .+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 653 44678899999999998876542 11 11123456667777 4455677788888877764332 12222 22
Q ss_pred HHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 350 RPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 350 ~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
...+..+...-+.+++.++..++-....
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 2233334455566777777776655544
No 174
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=97.21 E-value=0.06 Score=47.58 Aligned_cols=106 Identities=13% Similarity=0.056 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc-cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHH
Q 016814 13 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEV 91 (382)
Q Consensus 13 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~V 91 (382)
-|.....++..+.. . .....+...+..++ ++.++.....++.+++.-...++. .....++..+.+.++|..+.+
T Consensus 3 ~r~~~~~~L~~l~~-~---~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~-~~~~~~~~~~~kGl~~kk~~v 77 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-S---SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS-ELPKKVVDAFKKGLKDKKPPV 77 (339)
T ss_pred HHHHHHHHHHhCCC-c---chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc-CCCHHHHHHHHHHhcCCCCcH
Confidence 45556666665544 1 13444555555544 578889999999999998888833 334678999999999999999
Q ss_pred HHHHHHHHHHHHH---hhCHHHHHHhhhHhhhhhc
Q 016814 92 RIAAAGKVTKFCR---ILNPELAIQHILPCVKELS 123 (382)
Q Consensus 92 R~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~~ 123 (382)
|..-+..++.... .-....+...++|.+.+.+
T Consensus 78 R~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 78 RRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 9999999998865 1111233344555555543
No 175
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=97.19 E-value=0.0045 Score=42.52 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=30.5
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHhhC-HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcc
Q 016814 79 AYVRLLRDNEAEVRIAAAGKVTKFCRILN-PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 143 (382)
Q Consensus 79 ~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~ 143 (382)
..+..++|+.+.||..++..|.++++.-. .....+.++..+.+.++|+++.|=-.+++.+..++.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 34444455555555555555555554444 333333444444444444444444444444444443
No 176
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.12 E-value=0.022 Score=44.31 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHh---ccccCh
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLL---APVMGS 303 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l---~~~~~~ 303 (382)
+.++|.+...+.+.+..-|--|.+.+..+.+..+.+. ...++++.+...++..+..+..+++.++..+ .+..|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 5788999999998888888899999999988744443 4566777788889999999999999999999 667776
Q ss_pred h--hhhhhhHHHHHhhccC-----------CCccHHHHHHHHHHHHhhhhhHH
Q 016814 304 E--ITCSRLLPVVINASKD-----------RVPNIKFNVAKVLQSLIPIVDQS 343 (382)
Q Consensus 304 ~--~~~~~~l~~l~~~l~d-----------~~~~vR~~a~~~l~~i~~~~~~~ 343 (382)
. ++..+++|.+--+.+. ...+++...-++|..+-..-|++
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 5 6778888877633222 23557777777777766655554
No 177
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=97.10 E-value=0.21 Score=45.28 Aligned_cols=256 Identities=11% Similarity=0.095 Sum_probs=144.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHH----HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC-h-HhHHHhhHHHH
Q 016814 85 RDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-K-DATIEQLLPIF 158 (382)
Q Consensus 85 ~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~-~~~~~~l~~~l 158 (382)
.|++|.--..+.+.|..+......+. +...++..+..++.++++.-|......+..+-..+. . ......+...+
T Consensus 100 ~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~ 179 (409)
T PF01603_consen 100 LEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIF 179 (409)
T ss_dssp --TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHH
T ss_pred cccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45678777788888888877655543 455788888999999999999999998888764433 2 22335555666
Q ss_pred HHhhcC-CChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCch-HHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814 159 LSLLKD-EFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWR-VRLAIIEYIPLLASQLGVGFFDDKLG 233 (382)
Q Consensus 159 ~~~l~d-~~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~-vr~~~~~~l~~l~~~~~~~~~~~~l~ 233 (382)
.+++.+ ....--..+++.++.+...... +.....+...+..+.+.+... ....+..++..+...- +.. ...++
T Consensus 180 ~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~l-~~~~i 257 (409)
T PF01603_consen 180 YRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PSL-AEPVI 257 (409)
T ss_dssp HHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGG-HHHHH
T ss_pred HHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-chh-HHHHH
Confidence 666553 3445555666677776665431 111123334444444555443 2455555555555422 221 22344
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHh--ccccCh--hhh
Q 016814 234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLL--APVMGS--EIT 306 (382)
Q Consensus 234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l--~~~~~~--~~~ 306 (382)
..+.+..--.+..-....+.-+..+.+.++++.+ ...++..+...+.+++..|-+.|+..+..= ...+.. ...
T Consensus 258 ~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i 337 (409)
T PF01603_consen 258 KGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVI 337 (409)
T ss_dssp HHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHH
T ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHH
Confidence 4444443333444444556777777777766544 345666677788899999988888655331 111111 123
Q ss_pred hhhhHHHHHhh-ccCCCccHHHHHHHHHHHHhhhhhHH
Q 016814 307 CSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQS 343 (382)
Q Consensus 307 ~~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~~~~~~ 343 (382)
...++|.+.+. -++.+..||..+..++..+.. ++++
T Consensus 338 ~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~-~d~~ 374 (409)
T PF01603_consen 338 LPIIFPALYRNSKNHWNQTVRNLAQNVLKILME-MDPK 374 (409)
T ss_dssp HHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT-TSHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hCHH
Confidence 34444444442 246678899999999998865 4444
No 178
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.09 E-value=0.2 Score=45.09 Aligned_cols=175 Identities=10% Similarity=0.005 Sum_probs=86.3
Q ss_pred CCchHHHHHHHHHHHHHHhccCh--hhhh------hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc---ccch
Q 016814 8 NDQDSVRLLAVEGCAALGKLLEP--QDCV------AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RMDL 76 (382)
Q Consensus 8 d~~~~vR~~a~~~l~~l~~~~~~--~~~~------~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~l 76 (382)
...+.+.+..+..+..+....+. ..+. +.....+..++..+|+.+...++..+..+...-..... ...+
T Consensus 65 ~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~ 144 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYY 144 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHH
Confidence 34455556666666655554322 1111 11122233366677889999999999988753322111 1124
Q ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHH--H--HHHHHhhccccChHh
Q 016814 77 VPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSA--L--ASVIMGMAPLLGKDA 149 (382)
Q Consensus 77 l~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~--a--~~~l~~l~~~~~~~~ 149 (382)
.+.+...+..+ +...+..++.++..+.+.-.- -......++.+..+++.....++.. + +-++-.+-.......
T Consensus 145 ~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~ 224 (429)
T cd00256 145 FNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVL 224 (429)
T ss_pred HHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhh
Confidence 44555555543 355666677888777553221 1223345566666654322222222 2 222222222111111
Q ss_pred HHHhhHHHHHHhhcCCC-hHHHHHHHHhhHHhhh
Q 016814 150 TIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQ 182 (382)
Q Consensus 150 ~~~~l~~~l~~~l~d~~-~~vr~~~~~~l~~~~~ 182 (382)
....++|.+.+.+++.. +.|-+-++..+..+..
T Consensus 225 ~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 225 KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 22568888888887743 4444444455555444
No 179
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.07 E-value=0.027 Score=44.20 Aligned_cols=26 Identities=35% Similarity=0.299 Sum_probs=21.6
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHH
Q 016814 236 CMQWLQDKVYSIRDAAANNLKRLAEE 261 (382)
Q Consensus 236 l~~~l~d~~~~vr~~a~~~l~~~~~~ 261 (382)
+.-++.|++.++|.+|+..+..+.+.
T Consensus 45 lt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 45 LTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 34567899999999999999998875
No 180
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=97.07 E-value=0.018 Score=50.58 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=85.6
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCC-------CchHHHHHHHHhHHHHhh--h
Q 016814 153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--L 223 (382)
Q Consensus 153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~-------~~~vr~~~~~~l~~l~~~--~ 223 (382)
..+..+.+.+.+.+...|..++.++.. |.-.+.++|.+..++.+. ++..-...++....+... +
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 344555556666677778777666543 222267778777765332 444444445555554432 2
Q ss_pred chhhhHHHHHHHHHHHh----------ccchhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCcc--hHHHHH
Q 016814 224 GVGFFDDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMT 289 (382)
Q Consensus 224 ~~~~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~~--~~~r~~ 289 (382)
.-+.+..+++|.++.++ .++.|.+|..|+..++.++..++... +...+...+.+.+.|+. ......
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 33445567888877665 34668888888888888888887642 45556666666666554 344667
Q ss_pred HHHHHHHhc
Q 016814 290 ILRAISLLA 298 (382)
Q Consensus 290 a~~~l~~l~ 298 (382)
|+..+..++
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 777776665
No 181
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.07 E-value=0.021 Score=44.78 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhccChh---hhhhhhhhh
Q 016814 13 VRLLAVEGCAALGKLLEPQ---DCVAHILPV 40 (382)
Q Consensus 13 vR~~a~~~l~~l~~~~~~~---~~~~~ll~~ 40 (382)
||..|+.++..+++..++. .+|..++|-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~ 32 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPD 32 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCC
Confidence 7888888888888876553 335555554
No 182
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.05 E-value=0.28 Score=46.00 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=84.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--------HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--------~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
+..+.+++++++...|.+.++.++++...+.++ .-.+.++..+.+-+.|.+|.+|..++..+..+...-.+-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 566778899999999999999999998876433 234568888889999999999999999998887543321
Q ss_pred h-HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 016814 149 A-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182 (382)
Q Consensus 149 ~-~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~ 182 (382)
. ....+.......+.|.+.-||+++++.+..+.-
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 1 135677788888999999999999999888654
No 183
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.32 Score=46.33 Aligned_cols=281 Identities=14% Similarity=0.113 Sum_probs=154.4
Q ss_pred hHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccChHhHHHh
Q 016814 76 LVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDATIEQ 153 (382)
Q Consensus 76 ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ 153 (382)
-++.+...+.+ +-.+-|..|+.+|..+++....+.....+-|.+..+-.|- ++..-..+...+..+...=+.
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~------ 96 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS------ 96 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc------
Confidence 45555444433 3466799999999999987766655545544444444442 344444444444444322110
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHH-hhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH---
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQ-VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--- 229 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~-~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--- 229 (382)
....|.+. .-...-..+.. +.. .+..+..+...+...+.+||..+++.+..+....|.+.-.
T Consensus 97 ------~~v~dds~-qsdd~g~~iae~fik-------~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 97 ------PEVMDDST-QSDDLGLWIAEQFIK-------NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred ------hhhcccch-hhhHHHHHHHHHHHc-------CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 01111111 11111111211 111 1456677777888889999999999999999888876432
Q ss_pred --HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH-H--HHhhhHHHHHhhhcC----cchHHHHHHHHHHHHhccc
Q 016814 230 --DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-W--AMQHITPQVLEMINN----PHYLYRMTILRAISLLAPV 300 (382)
Q Consensus 230 --~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-~--~~~~l~~~l~~~l~~----~~~~~r~~a~~~l~~l~~~ 300 (382)
|.-+..++.++.|....||..++-.+..+.+..+.- . ..+-++..+++.+.. ...-|-+-++..+..+.+.
T Consensus 163 ~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 163 VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 444566788899999999999999999998866541 1 123344444444432 2234556666666666554
Q ss_pred c-Chh-hhh-hhhHHHHHhhc-----cCC----CccHHHHHHHHHHHHhhh-hhH------------HHHHHhHHHHHHH
Q 016814 301 M-GSE-ITC-SRLLPVVINAS-----KDR----VPNIKFNVAKVLQSLIPI-VDQ------------SMVEKTIRPCLVE 355 (382)
Q Consensus 301 ~-~~~-~~~-~~~l~~l~~~l-----~d~----~~~vR~~a~~~l~~i~~~-~~~------------~~~~~~i~~~l~~ 355 (382)
- +.. .|. ...+|.+.++| .|. ...-|...+..+-.+... +.+ -.....++..|..
T Consensus 243 N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~ 322 (970)
T KOG0946|consen 243 NISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCT 322 (970)
T ss_pred CcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHH
Confidence 2 222 232 34566666443 341 223444433333333221 111 1234567777777
Q ss_pred hcCC--CCccHHhHHHHHHHHHH
Q 016814 356 LTED--PDVDVRFFATQAIQSID 376 (382)
Q Consensus 356 l~~d--~~~~vr~~a~~al~~~~ 376 (382)
.+-. -..+|+..+.-+++.+.
T Consensus 323 il~~~~vp~dIltesiitvAevV 345 (970)
T KOG0946|consen 323 ILMHPGVPADILTESIITVAEVV 345 (970)
T ss_pred HHcCCCCcHhHHHHHHHHHHHHH
Confidence 5433 34567776666555443
No 184
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=96.98 E-value=0.21 Score=43.36 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc
Q 016814 245 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN 280 (382)
Q Consensus 245 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~ 280 (382)
.+.+...+++++.+......+. ..+.+|.+.+.|.
T Consensus 255 e~rkL~lLK~lAEMss~ttaq~-a~q~Lpsi~elLk 289 (460)
T KOG2213|consen 255 EERKLDLLKALAEMSSYTTAQA-ARQMLPSIVELLK 289 (460)
T ss_pred HHHHHHHHHHHHHhCccchHHH-HHHHHHHHHHHHH
Confidence 4566677788888877664333 3457777776664
No 185
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=96.97 E-value=0.04 Score=44.07 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=94.3
Q ss_pred hHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcch
Q 016814 207 RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY 284 (382)
Q Consensus 207 ~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 284 (382)
..-..++..++.+...+|... ....++..+.++-.+++...|+.+-.+++..++.+|++.+.+ ++|.-.+. .++..
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~ 92 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQ 92 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCC
Confidence 344556666666666666532 223445555666677778899999999999999999987665 55533222 22223
Q ss_pred HHHHHHHHHHHHhccccChhhhhhhhHHHHHhhcc------CCCccHHHHHHHHH-HHHhhhhh-----H----HHHHHh
Q 016814 285 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVL-QSLIPIVD-----Q----SMVEKT 348 (382)
Q Consensus 285 ~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~------d~~~~vR~~a~~~l-~~i~~~~~-----~----~~~~~~ 348 (382)
.-|.-.+-.+..-..+..-.+|.++++|..-.+-+ .....+.....+++ .++..-+. + +.| ..
T Consensus 93 ~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F-~~ 171 (198)
T PF08161_consen 93 PGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF-PS 171 (198)
T ss_pred cccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-HH
Confidence 33444444444444444555788888886544321 12222333333332 22222111 1 223 56
Q ss_pred HHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814 349 IRPCLVELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 349 i~~~l~~l~~d~~~~vr~~a~~al~~~ 375 (382)
+-+.|.+.+.| .+++|...++|+..+
T Consensus 172 ~a~~L~~~L~~-~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 172 FAKLLGNALYD-QPDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHHhc-CcchHHHHHHHHHHH
Confidence 66667777776 488999999998875
No 186
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.42 Score=46.58 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=71.8
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH-
Q 016814 269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ- 342 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~- 342 (382)
.+++.....++++++-.+|..++.++..-...+... +......|.+...+.+.++-+-..|++++..++...|.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 456667778899999999999999987755544321 34556677788889999999999999999999887763
Q ss_pred --HHHHHhHHHHHHHhcCCCC
Q 016814 343 --SMVEKTIRPCLVELTEDPD 361 (382)
Q Consensus 343 --~~~~~~i~~~l~~l~~d~~ 361 (382)
..+.+.++|.+.+++.|..
T Consensus 882 v~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899998776644
No 187
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.93 E-value=0.33 Score=44.92 Aligned_cols=266 Identities=14% Similarity=0.082 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCC
Q 016814 11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDN 87 (382)
Q Consensus 11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~d~ 87 (382)
-..|..|++-+......++. .....+......++..+ ..+.|.++.+.+...++.-.. ...+..+...+..--.++
T Consensus 4 l~~R~~a~~~l~~~i~~~~~-~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~ 82 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL-SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD 82 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch
Confidence 35688899888888887765 33455666667777644 567999999999999876554 122223444443333444
Q ss_pred cHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCc---------------------------hHHHHHHHHHHHh
Q 016814 88 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS---------------------------QHVRSALASVIMG 140 (382)
Q Consensus 88 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~---------------------------~~vr~~a~~~l~~ 140 (382)
+-.-|-.++.+|..=++.+.. +...+.|.+...+.... ...-...+..+..
T Consensus 83 d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 83 DFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 555676676666654444322 22334444443332111 1111122222222
Q ss_pred hcccc---ChHhHHHhhHHHHHHhhcC-CChHHHHHHHHhhHHhhhh--hchhhHhhhHHHHHHHHhcCCCchHHHHHHH
Q 016814 141 MAPLL---GKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214 (382)
Q Consensus 141 l~~~~---~~~~~~~~l~~~l~~~l~d-~~~~vr~~~~~~l~~~~~~--~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~ 214 (382)
+.+.- -.+.....++..+..+++. .++..-..+++.+..+..+ ++.+.+ ..++..|....+.. .....+-+
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl-~~~i~vLCsi~~~~--~l~~~~w~ 237 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL-SPCIEVLCSIVNSV--SLCKPSWR 237 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH-HHHHHHHhhHhccc--ccchhHHH
Confidence 22211 1223345555656666544 3344446777777776553 444444 44555555443322 22333444
Q ss_pred HhHHHHh-hhchhhhHHHHHHHH--HHHhccchhHHHHHHHHHHHHHHHHhChHHH----H--hhhHHHHHhhhcCcc
Q 016814 215 YIPLLAS-QLGVGFFDDKLGALC--MQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----M--QHITPQVLEMINNPH 283 (382)
Q Consensus 215 ~l~~l~~-~~~~~~~~~~l~~~l--~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~----~--~~l~~~l~~~l~~~~ 283 (382)
.+..+++ +.|...+ ..+..++ ...-..++..+-.+|+..++.+.-..|.+.+ . ..++|.+...++.++
T Consensus 238 ~m~nL~~S~~g~~~i-~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~ 314 (464)
T PF11864_consen 238 TMRNLLKSHLGHSAI-RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS 314 (464)
T ss_pred HHHHHHcCccHHHHH-HHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC
Confidence 4554443 2222221 1222222 0011123445555777777776654432211 1 125555555555443
No 188
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.93 E-value=0.06 Score=47.58 Aligned_cols=221 Identities=14% Similarity=0.069 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHhCCcccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHH
Q 016814 53 RYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVR 131 (382)
Q Consensus 53 R~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr 131 (382)
|...++.|..+.. ......++..+..++. +.+.....+.+.++..-...++. ...+.++..+.+.++|+.+.+|
T Consensus 4 r~~~~~~L~~l~~----~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~-~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 4 RVLHASMLSSLPS----SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS-ELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHhCCC----cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc-CCCHHHHHHHHHHhcCCCCcHH
Confidence 4455555554432 2234456666666554 45677888888888887766622 2234677889999999999999
Q ss_pred HHHHHHHHhhccccC---hHhHHHhhHHHHHHh----hcCCChHHHHHHHHhhHHhhh--hhchhhHh------------
Q 016814 132 SALASVIMGMAPLLG---KDATIEQLLPIFLSL----LKDEFPDVRLNIISKLDQVNQ--VIGIDLLS------------ 190 (382)
Q Consensus 132 ~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~----l~d~~~~vr~~~~~~l~~~~~--~~~~~~~~------------ 190 (382)
...+..++......+ .......++|.+.+. ...+.+......+.+...+.. ....+...
T Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 158 (339)
T PF12074_consen 79 RAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALD 158 (339)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccC
Confidence 999999998765111 111223444444444 444433322111111111111 00000000
Q ss_pred --hh--HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh---HHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHH
Q 016814 191 --QS--LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQDK--VYSIRDAAANNLKRLAEE 261 (382)
Q Consensus 191 --~~--llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~ 261 (382)
+. +-+.+..-+ .+...-..+++.+..+......... ...+-..+..++.++ .++||..|.+.+..+...
T Consensus 159 ~kps~ll~~kvyskl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 159 PKPSFLLSEKVYSKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred CCcchhcCHHHHhcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 00 001111110 1222233444455444443322111 234666677777777 899999999999998876
Q ss_pred hChHHHHhhhHHHHHhhhcC
Q 016814 262 FGPEWAMQHITPQVLEMINN 281 (382)
Q Consensus 262 ~~~~~~~~~l~~~l~~~l~~ 281 (382)
.+.. +...++..+.+.+.+
T Consensus 237 ~~~~-l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 237 NPEL-LSKSLISGLWKWLSS 255 (339)
T ss_pred ChHH-HHHHHHHHHHHHHHh
Confidence 5443 555566666666643
No 189
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.88 E-value=0.031 Score=43.56 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=84.7
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHH---hhhhhH
Q 016814 269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSL---IPIVDQ 342 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i---~~~~~~ 342 (382)
..++|.+.+.+.......|-.|...+..+.+..+.+ ++..++++.+...|+..+++|..+++++|..+ ...+|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 468999999999888888888999999988773333 56788888999999999999999999999999 666776
Q ss_pred H--HHHHhHHHHHHHhcCC-----------CCccHHhHHHHHHHHHHHHhc
Q 016814 343 S--MVEKTIRPCLVELTED-----------PDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 343 ~--~~~~~i~~~l~~l~~d-----------~~~~vr~~a~~al~~~~~~~~ 380 (382)
. .+..+++|.+.-+.+. ...+++.....++..+-..=|
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 5 3567888888743322 335566666666665544433
No 190
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.85 E-value=0.31 Score=44.53 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH---HHhhhHhhhhhc
Q 016814 47 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELS 123 (382)
Q Consensus 47 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~il~~l~~~~ 123 (382)
|.-.+.|..++++||.++.+++........-+.+...+++++..=|..+.-.+..++........ ...+.+.+.+.+
T Consensus 98 d~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 98 DVVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 34467899999999999998866554333334688888988888888888888888876643311 134556666666
Q ss_pred CC
Q 016814 124 SD 125 (382)
Q Consensus 124 ~d 125 (382)
.+
T Consensus 178 ~~ 179 (441)
T PF12054_consen 178 EN 179 (441)
T ss_pred cC
Confidence 53
No 191
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.85 E-value=0.018 Score=49.24 Aligned_cols=135 Identities=21% Similarity=0.236 Sum_probs=84.9
Q ss_pred hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc---cc-----cchHHHHHHhcC--------CCcHHHHHH
Q 016814 31 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TR-----MDLVPAYVRLLR--------DNEAEVRIA 94 (382)
Q Consensus 31 ~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~-----~~ll~~l~~~l~--------d~~~~VR~~ 94 (382)
+..++.++|.+..++.|.++.+|..+++++..+.+.++... .. +.+.+.+..++. +++..+-..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 45678899999999999999999999999999998777654 22 224445555555 666778888
Q ss_pred HHHHHHHHHHhhCH-------H----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHh
Q 016814 95 AAGKVTKFCRILNP-------E----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSL 161 (382)
Q Consensus 95 a~~~l~~l~~~~~~-------~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~ 161 (382)
+..++..++..... . .+.+.++..+....+-+.+.++...++.+..+...+|-.. ..+.++|.+.+.
T Consensus 194 ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 194 AYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 88888887664311 0 1111122222222222346666677777666666666433 235666666665
Q ss_pred hcCC
Q 016814 162 LKDE 165 (382)
Q Consensus 162 l~d~ 165 (382)
+.++
T Consensus 274 l~np 277 (282)
T PF10521_consen 274 LENP 277 (282)
T ss_pred hcCC
Confidence 5553
No 192
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.45 Score=45.09 Aligned_cols=339 Identities=11% Similarity=0.022 Sum_probs=182.7
Q ss_pred HHHHHHHHHHhccChhhhhhhhhhhhhhhc-----cC---CCHHHHHHHHHHHHHHHHHhCCcc-----cccchHHHHHH
Q 016814 16 LAVEGCAALGKLLEPQDCVAHILPVIVNFS-----QD---KSWRVRYMVANQLYELCEAVGPEP-----TRMDLVPAYVR 82 (382)
Q Consensus 16 ~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-----~d---~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~ll~~l~~ 82 (382)
+|+.++...+. -.++...+.+++++...+ .+ ++.+-.+.+.+.++.+...++..- ....+++.++.
T Consensus 389 aal~fl~~~~s-Krke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P 467 (970)
T COG5656 389 AALFFLIISKS-KRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIP 467 (970)
T ss_pred HHHHHHHHHhc-ccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhH
Confidence 34444444333 334444555666665544 22 345667788899888887554421 12236777777
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh-HHHhhHHHHHHh
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA-TIEQLLPIFLSL 161 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~ 161 (382)
.++++..-.|..+++.+..+-..+....+...+......++++.+-.|+..|+-++.-+........ ....+.+.+.++
T Consensus 468 ~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekL 547 (970)
T COG5656 468 AFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKL 547 (970)
T ss_pred hhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHH
Confidence 8899999999999999999977777666666677777788888888899999999888765433222 223333444444
Q ss_pred ---hcCCChHHHHHHHHhh-HHhhhhhc---hhhH---hhhHHHHHHHHhcCC---Cc---hHHHHHHHHhHH---HHhh
Q 016814 162 ---LKDEFPDVRLNIISKL-DQVNQVIG---IDLL---SQSLLPAIVELAEDR---HW---RVRLAIIEYIPL---LASQ 222 (382)
Q Consensus 162 ---l~d~~~~vr~~~~~~l-~~~~~~~~---~~~~---~~~llp~l~~~~~d~---~~---~vr~~~~~~l~~---l~~~ 222 (382)
.++-+-++-..+.+.+ +.+.+.+. ++.. .++++.....++..+ +. +-..++...+.. +.-.
T Consensus 548 LsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLS 627 (970)
T COG5656 548 LSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILS 627 (970)
T ss_pred HHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHh
Confidence 3443333333333333 22222222 2211 122233333333222 11 122233333333 3322
Q ss_pred hchh--h---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh-HHHHhhhHHHHHhhhcCcch-HHHHHHHHHHH
Q 016814 223 LGVG--F---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPHY-LYRMTILRAIS 295 (382)
Q Consensus 223 ~~~~--~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~ 295 (382)
+... . ....+.|.+.-.+++....+-..|+..+....-.... +...-.+...+.+.+.++.. ..-+.+..++.
T Consensus 628 len~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~ 707 (970)
T COG5656 628 LENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALD 707 (970)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHH
Confidence 3221 1 2345677777677776667777777666555432211 01111233333344445442 34455666777
Q ss_pred HhccccChh-----hhhhhhHHHHHhhccCCCc--cHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHh
Q 016814 296 LLAPVMGSE-----ITCSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356 (382)
Q Consensus 296 ~l~~~~~~~-----~~~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l 356 (382)
.+...-+.+ .+...+.......+..+.- +=+..+++.+..+.-.++.+. .++.+|.+.+.
T Consensus 708 nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~L-l~qy~plfi~v 774 (970)
T COG5656 708 NFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL-LSQYLPLFISV 774 (970)
T ss_pred HHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchh-HHhhhHHHHHH
Confidence 766433322 2333444555566665544 457788888888888777642 33345555443
No 193
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=96.77 E-value=0.069 Score=43.65 Aligned_cols=133 Identities=15% Similarity=0.132 Sum_probs=83.3
Q ss_pred hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC-CcHHHHHHH-HHHHHHHHHhhCHHHHHH
Q 016814 36 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAA-AGKVTKFCRILNPELAIQ 113 (382)
Q Consensus 36 ~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-~~~~VR~~a-~~~l~~l~~~~~~~~~~~ 113 (382)
....++.++.++...+.|..++..+.......+ ...++.+...+.+ ++|.+-... ...++.+.... +
T Consensus 51 ~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~ 119 (213)
T PF08713_consen 51 ELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------P 119 (213)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------G
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------H
Confidence 444556667777777888888877765432211 1245556655554 356655444 34444443211 3
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
...+.+.+.++|+++.+|..++..+...... ...+.++..+...+.|++..||.++..+|..++..
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 5667788888888888888887665444432 23467777778888888888888888888877654
No 194
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.72 E-value=0.36 Score=42.99 Aligned_cols=213 Identities=16% Similarity=0.089 Sum_probs=119.9
Q ss_pred hccCCchHHHHHHHHHHHHHHhccCh-hhhhhh-hhhh-hhhhccC-CCHHHHHHHHHHHHHHHHHh-CCcccccchHHH
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEP-QDCVAH-ILPV-IVNFSQD-KSWRVRYMVANQLYELCEAV-GPEPTRMDLVPA 79 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~-ll~~-l~~~~~d-~~~~vR~~a~~~l~~l~~~~-~~~~~~~~ll~~ 79 (382)
++.|+ ..||.++.+.+..+...... ....+. +--+ +..+..| ++..-|..|.+.+..+.+.- +.+.....++..
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 45555 99999999999877664321 111111 1111 2233344 45677999999999998763 234444568888
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh------HhHHHh
Q 016814 80 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------DATIEQ 153 (382)
Q Consensus 80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~ 153 (382)
++....+++...|..|++++..++-.-+.=.....-+..+.+.+.|....+-...+.++-.+...-.. +...+.
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~ 192 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLES 192 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHH
Confidence 88888999999999999999988765444333344456666666665555666666666655533221 112244
Q ss_pred hHHHHHHh----hcCCCh-HHHHHHHHhhHHhhhhhch------hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814 154 LLPIFLSL----LKDEFP-DVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 220 (382)
Q Consensus 154 l~~~l~~~----l~d~~~-~vr~~~~~~l~~~~~~~~~------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 220 (382)
++..+.+. .++... +.-..+..++..+.+.++- +.+ .-+..+...+.-++..+|..++..+-.+.
T Consensus 193 l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 193 LLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred HHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44444443 222221 2334445555555444321 111 23334444445555555555555554443
No 195
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.69 E-value=0.28 Score=40.66 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=107.2
Q ss_pred hcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHH--
Q 016814 122 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-- 199 (382)
Q Consensus 122 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~-- 199 (382)
+-+..++.+.....+++..++.+-. .....++..+..+.+......+..+...+..+.+.-+ ..+ ..+-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-PFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH-HHHHHHHHHHH
Confidence 5556666666777777766665431 2234455555555555555554444444444433211 111 222222222
Q ss_pred -------HhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhChHHHHhhh
Q 016814 200 -------LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 271 (382)
Q Consensus 200 -------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 271 (382)
.-++..|+...+.+..+..++...+. -...+++.+...+ ++.+..++..+++.+..+++.--.+. .+ .
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~-~s-~ 160 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF-YS-A 160 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH-HH-H
Confidence 01345677777777788888776555 3457888888888 78888899999999999985422221 11 2
Q ss_pred HHHHHhhhcC-cchHHHHHHHHHHHHhccc-cC---hhhhhhhhHHHHHhhccCCCc
Q 016814 272 TPQVLEMINN-PHYLYRMTILRAISLLAPV-MG---SEITCSRLLPVVINASKDRVP 323 (382)
Q Consensus 272 ~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~-~~---~~~~~~~~l~~l~~~l~d~~~ 323 (382)
...+...++. ..+.+-...+..+..+... .. .+.+...++..+.++..+...
T Consensus 161 w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 161 WKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 2233333332 3344544444544443322 11 123566778888888776664
No 196
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=0.71 Score=45.97 Aligned_cols=243 Identities=16% Similarity=0.080 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHhCC-cccc-c----chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHhhh
Q 016814 51 RVRYMVANQLYELCEAVGP-EPTR-M----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCVK 120 (382)
Q Consensus 51 ~vR~~a~~~l~~l~~~~~~-~~~~-~----~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~l~ 120 (382)
.+|...+..++.+...++. .... . .++..+..+...+-..+|..|.-+...+...+-..... ...-..-.
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQl 249 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQL 249 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4677788888888776665 2222 2 24444444434444557888776666554432111000 00000000
Q ss_pred hhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHH-----hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHH
Q 016814 121 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS-----LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 195 (382)
Q Consensus 121 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-----~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp 195 (382)
++-...+..-|...-..+......-+.....+.++..+.+ .-.|-.+.+|..+++.++.-+..++.-.+...++.
T Consensus 250 eaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLK 329 (1048)
T KOG2011|consen 250 EAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLK 329 (1048)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHH
Confidence 0111111112221111111111111111122333333332 23788999999999999998888877666677888
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHHHhhh---c-hhhhHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhChHHHHhh
Q 016814 196 AIVELAEDRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQH 270 (382)
Q Consensus 196 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~-~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 270 (382)
.+--.+.|.+-.||..++..|..+...- + -+.|...+-..+..+. .|-+..||...+..+-..... ..+...
T Consensus 330 YiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~---g~L~d~ 406 (1048)
T KOG2011|consen 330 YIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSS---GLLSDK 406 (1048)
T ss_pred HhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc---cccChh
Confidence 8888889999999999999999988762 1 2333344444455554 666777887776655444221 111111
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHH
Q 016814 271 ITPQVLEMINNPHYLYRMTILRAISL 296 (382)
Q Consensus 271 l~~~l~~~l~~~~~~~r~~a~~~l~~ 296 (382)
=+-.+..++-|.+.+++.+|...+..
T Consensus 407 di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 407 DILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHH
Confidence 22234455567777777776655543
No 197
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.66 E-value=0.027 Score=43.46 Aligned_cols=146 Identities=13% Similarity=0.101 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhh-hcCcchHHHHHHHHHHHHhccc-cChhh
Q 016814 229 DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPHYLYRMTILRAISLLAPV-MGSEI 305 (382)
Q Consensus 229 ~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~-~~~~~ 305 (382)
.+.+++.+...++. .++.+|..+++.+|.+.. +.+-.+.. +....... -.+.+........ ...... ...+.
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~-~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~ee~ 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKS-IQKSLDSKSSENSNDESTDISL---PMMGISPSSEEY 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhc-ccccCCccccccccccchhhHH---hhccCCCchHHH
Confidence 46788999888874 469999999999998764 33221110 00000000 0111111111111 111111 23445
Q ss_pred hhhhhHHHHHhhccCCCcc-HHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHh
Q 016814 306 TCSRLLPVVINASKDRVPN-IKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379 (382)
Q Consensus 306 ~~~~~l~~l~~~l~d~~~~-vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 379 (382)
+-..++..+.+.++|+.-. -...+++++..+.+..|.. .+..+++|.+.......+...|....+-++.+....
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 6667788899999998643 5567888888888766643 577899999999888767789998888888887654
No 198
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.62 E-value=0.037 Score=54.94 Aligned_cols=167 Identities=13% Similarity=0.103 Sum_probs=106.9
Q ss_pred HHHHHHHhHHHHhhhchhhhH--HHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHH---hChHHH--HhhhHHHHHhh
Q 016814 209 RLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQD---KVYSIRDAAANNLKRLAEE---FGPEWA--MQHITPQVLEM 278 (382)
Q Consensus 209 r~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d---~~~~vr~~a~~~l~~~~~~---~~~~~~--~~~l~~~l~~~ 278 (382)
|+.+-..|..+++.+|...+. +.+-..+...+.+ .+. ..+..+..+-.. +| ..+ .-..+|.+..+
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d----~~~~s~~vf~s~~~~m~-s~l~~~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND----EFLSSFEVFNSLAPLMH-SFLHPLGSLLPRLFFF 824 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc----chhhhHHHHHHHHHhhh-hhhhhhhhhhhHHHHh
Confidence 666667788888888876654 2333333333321 111 112222222111 11 111 22567788888
Q ss_pred hcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHH-HHHHHhhhhh--HHHHHHhHHHHHHH
Q 016814 279 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAK-VLQSLIPIVD--QSMVEKTIRPCLVE 355 (382)
Q Consensus 279 l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~-~l~~i~~~~~--~~~~~~~i~~~l~~ 355 (382)
..+.+..+|.+++.+++.+.+....+ ....++..++..+++...-+|...+. .+..+..... -..+...+.|.+..
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e-~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr 903 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRE-TMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLR 903 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhc
Confidence 88999999999999999987654444 45566667777777766656655554 4444433322 22456778888999
Q ss_pred hcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 356 LTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 356 l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
+..|....||.+|.+++..+.++++.
T Consensus 904 ~msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 904 RMSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred ccccchHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988763
No 199
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.54 E-value=0.48 Score=41.37 Aligned_cols=210 Identities=17% Similarity=0.197 Sum_probs=112.3
Q ss_pred ChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch
Q 016814 146 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 225 (382)
Q Consensus 146 ~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 225 (382)
.++....+++..+.+++.+... +... +..+...-. . ..+-|.+. ++..+++.+...++..+..++...+.
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~--~~~~---~~~~~~~~~---~-~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPS--RVEL---FLELAKQDD---S-DPYSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSS--SHHH---HHHHHH-TT---H---HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred CcHHHHHHHHHHHHHHHhcCHH--HHHH---HHHhccccc---c-hhHHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 3445566777777777666431 1111 111111111 0 12334444 77788999999999999998876544
Q ss_pred hhhH--HHHHHHHHHHhc----cchhHHHHHHHHHHHHHHHHhC--hHHHHhhhHHHHHhhh------c-CcchHHHHHH
Q 016814 226 GFFD--DKLGALCMQWLQ----DKVYSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMI------N-NPHYLYRMTI 290 (382)
Q Consensus 226 ~~~~--~~l~~~l~~~l~----d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~l~~~l~~~l------~-~~~~~~r~~a 290 (382)
.... ..+++.+.++++ .++.+++..++.+++.+...-. .-++....++.+...+ . ..+.+....+
T Consensus 139 ~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ 218 (312)
T PF03224_consen 139 RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQA 218 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHH
Confidence 3322 245555555554 4566778888999998875311 1223345666666666 2 2235667777
Q ss_pred HHHHHHhcccc--ChhhhhhhhHHHHHhhccCCCcc-HHHHHHHHHHHHhhhhh----HHHHHHhHHHHHHHhcCC--CC
Q 016814 291 LRAISLLAPVM--GSEITCSRLLPVVINASKDRVPN-IKFNVAKVLQSLIPIVD----QSMVEKTIRPCLVELTED--PD 361 (382)
Q Consensus 291 ~~~l~~l~~~~--~~~~~~~~~l~~l~~~l~d~~~~-vR~~a~~~l~~i~~~~~----~~~~~~~i~~~l~~l~~d--~~ 361 (382)
+.++..++-.- -.......++|.+...+++...+ |-..++.++..+...-. +......+++.+..+... .|
T Consensus 219 ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~D 298 (312)
T PF03224_consen 219 LLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSD 298 (312)
T ss_dssp HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SS
T ss_pred HHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCC
Confidence 77777765221 11223345889888888765543 55556666666665433 234556777777777654 45
Q ss_pred ccHH
Q 016814 362 VDVR 365 (382)
Q Consensus 362 ~~vr 365 (382)
+++.
T Consensus 299 edl~ 302 (312)
T PF03224_consen 299 EDLT 302 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 200
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.84 Score=43.68 Aligned_cols=170 Identities=18% Similarity=0.223 Sum_probs=107.5
Q ss_pred HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhh--ch
Q 016814 110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI--GI 186 (382)
Q Consensus 110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~~~~~l~~~~~~~--~~ 186 (382)
...+.++|-+. --.+..-..|+..+..+++....--+......+...+.+++.|. +..||.+++.++..+.+.. .+
T Consensus 484 Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ 562 (978)
T KOG1993|consen 484 WLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSE 562 (978)
T ss_pred HHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCCh
Confidence 45566777666 22233456889999999998875444555677788888999997 6788999999998887654 34
Q ss_pred hhHhhhHHHHH----HHHhc-CCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhc--cchhHHHHHHHHHHHH
Q 016814 187 DLLSQSLLPAI----VELAE-DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQ--DKVYSIRDAAANNLKR 257 (382)
Q Consensus 187 ~~~~~~llp~l----~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~ 257 (382)
+.| ..++|.+ .+++. -..-+.|..++..++.+....++.. +..+++..+-.+.. ...+-.|-+.+..+..
T Consensus 563 dsF-lp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~ 641 (978)
T KOG1993|consen 563 DSF-LPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRN 641 (978)
T ss_pred hhh-hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 444 2222332 22322 2334567888888888887776543 23344444444333 2345578888899999
Q ss_pred HHHHhChHH--HHhhhHHHHHhhhcCc
Q 016814 258 LAEEFGPEW--AMQHITPQVLEMINNP 282 (382)
Q Consensus 258 ~~~~~~~~~--~~~~l~~~l~~~l~~~ 282 (382)
++..+|.+. +..-++| +++.-.|+
T Consensus 642 lV~alg~qS~~~~~fL~p-VIel~~D~ 667 (978)
T KOG1993|consen 642 LVNALGAQSFEFYPFLYP-VIELSTDP 667 (978)
T ss_pred HHHHhccCCccchHHHHH-HHHHhcCC
Confidence 999998753 3333343 44554554
No 201
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=96.48 E-value=0.064 Score=47.23 Aligned_cols=137 Identities=13% Similarity=0.163 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHHHH--hCh
Q 016814 194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-------VYSIRDAAANNLKRLAEE--FGP 264 (382)
Q Consensus 194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-------~~~vr~~a~~~l~~~~~~--~~~ 264 (382)
...+.+.+.+.+...|..++..+..-. | ..+++|.+..++.+. +...-...++.+..+..+ +.-
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~tD~---g----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRTDP---G----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHL 252 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhccCC---C----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCch
Confidence 344444555566666777666654422 2 245666666655443 333333444444444432 223
Q ss_pred HHHHhhhHHHHHhhh----------cCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCcc--HHHHHH
Q 016814 265 EWAMQHITPQVLEMI----------NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPN--IKFNVA 330 (382)
Q Consensus 265 ~~~~~~l~~~l~~~l----------~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~--vR~~a~ 330 (382)
+.+...++|.++.++ .+.+|..|..|+..+..+++.++.. .....++..+.+.+.|+... ....|+
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi 332 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI 332 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence 567777888888765 2356999999999999999888865 35566666777777766433 467777
Q ss_pred HHHHHHh
Q 016814 331 KVLQSLI 337 (382)
Q Consensus 331 ~~l~~i~ 337 (382)
..|..++
T Consensus 333 ~GL~~lG 339 (343)
T cd08050 333 VGLSALG 339 (343)
T ss_pred HHHHHhC
Confidence 7777664
No 202
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.26 Score=44.97 Aligned_cols=126 Identities=13% Similarity=0.243 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC--CcH
Q 016814 12 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEA 89 (382)
Q Consensus 12 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d--~~~ 89 (382)
.-|....+.+...+...|.+...+.+...+.+ ..++|+.-++++..+..++..+..+. +.++|.+++.+.+ ...
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~ 442 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICNLPEQA 442 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhCCccch
Confidence 45667777777777777666555555544444 56677777777777777777666543 3456666554433 224
Q ss_pred HHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcc
Q 016814 90 EVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 143 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~ 143 (382)
.+|.+++..+|.+.+..... ...+-++..+...+++.. ....++.++..++.
T Consensus 443 ~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 443 PLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred hHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 47777777777777765443 222333344444444444 44555555555554
No 203
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.40 E-value=0.95 Score=43.21 Aligned_cols=335 Identities=17% Similarity=0.179 Sum_probs=181.8
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc-----chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--H
Q 016814 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E 109 (382)
Q Consensus 37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~-----~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~ 109 (382)
=+|-...++...++.+...+.-.+.-++ ++.+..+. .=+|.++.++.+.+.+|+..|+.+|.++.-.-.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlc--fgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLC--FGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHH--hhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 3455666777778888888888887777 34433222 2488999999999999999999999998543221 1
Q ss_pred --HH-HHhhhHhhhhhcCC-CchHHHHHHHHHHHhhccc--cChHhHHHhhHHHHHHhh-------cCC-------ChHH
Q 016814 110 --LA-IQHILPCVKELSSD-SSQHVRSALASVIMGMAPL--LGKDATIEQLLPIFLSLL-------KDE-------FPDV 169 (382)
Q Consensus 110 --~~-~~~il~~l~~~~~d-~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l-------~d~-------~~~v 169 (382)
.+ ...=+|.+.+++.. .+.+||+.+...+-.+... +... ....-++.+...+ .++ ...|
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~-ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKML-IITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHH-HHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 11 11223555555543 5567888888777777654 1111 1112222222211 111 1223
Q ss_pred HHHHHHhhHHhhhhhch--------hhHhhhHHHHHHHHhcC---CCchH--HHHHHHHhHHHHh---------------
Q 016814 170 RLNIISKLDQVNQVIGI--------DLLSQSLLPAIVELAED---RHWRV--RLAIIEYIPLLAS--------------- 221 (382)
Q Consensus 170 r~~~~~~l~~~~~~~~~--------~~~~~~llp~l~~~~~d---~~~~v--r~~~~~~l~~l~~--------------- 221 (382)
-.++.-+|..+...-.. +..++.++-.+..+... ++..| ..++++.++.=..
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 23333333322211000 01123333333322211 11111 1112222211000
Q ss_pred -------------hhch---h----------------------hhHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHh
Q 016814 222 -------------QLGV---G----------------------FFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEF 262 (382)
Q Consensus 222 -------------~~~~---~----------------------~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~ 262 (382)
.++. + .+.+.++.....++. ..+..+-++++.+|..+.-..
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 0110 0 123556666555554 456778888888888876533
Q ss_pred Ch--H-----H-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHHhhccCCCc------cHHH
Q 016814 263 GP--E-----W-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVINASKDRVP------NIKF 327 (382)
Q Consensus 263 ~~--~-----~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l~d~~~------~vR~ 327 (382)
+. + . -.+..+|.+.+++...+..+-.+++.++..++...... ..-.+.+|.|...|-+..+ ++-.
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~ 630 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVR 630 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHH
Confidence 22 1 1 23557889999999999999999999999998665543 4557889999999887765 3556
Q ss_pred HHHHHHHHHh-hhhhH--HHHHHhHHHHHHHhcCCC-CccHHhHHHHHHHH
Q 016814 328 NVAKVLQSLI-PIVDQ--SMVEKTIRPCLVELTEDP-DVDVRFFATQAIQS 374 (382)
Q Consensus 328 ~a~~~l~~i~-~~~~~--~~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~ 374 (382)
+++.+|..+. +.+.+ +.+...-++.|..+.... ++.+-.+|...+..
T Consensus 631 ~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~ 681 (717)
T KOG1048|consen 631 AVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDV 681 (717)
T ss_pred HHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 6666776666 33322 234445556666655443 33444455444443
No 204
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.40 E-value=0.74 Score=41.99 Aligned_cols=274 Identities=14% Similarity=0.123 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhC---HH---HHHHhhhH
Q 016814 47 DKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILN---PE---LAIQHILP 117 (382)
Q Consensus 47 d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~---~~---~~~~~il~ 117 (382)
-+|+.+=++.++.+..+.+...+- ...+.+...+....+++ +|..-....++++.+.+... ++ .+.+.++|
T Consensus 41 ~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 41 AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 446666666666665443333221 11123444444455555 58888999999999988754 23 46678899
Q ss_pred hhhhhcCCCchHHHHHHHHHHHhhccccChHh---HHHhhHHHHHHh-hcCCChHHHHHHHHhhHHhhhhhch----hhH
Q 016814 118 CVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGI----DLL 189 (382)
Q Consensus 118 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~-l~d~~~~vr~~~~~~l~~~~~~~~~----~~~ 189 (382)
.+...++..-.+.---+...++.+.+..+.+. ....++|.+..- +=+...++ -+...-+..+.+.-+. ...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~ 199 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQ 199 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhh
Confidence 99887765433222333344444433222111 223444443321 21111122 1222222222222111 112
Q ss_pred hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh---hHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChH
Q 016814 190 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE 265 (382)
Q Consensus 190 ~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~ 265 (382)
.+.++..+.+++.++..+ ..+.+.+..+...++.+. +.+.++..+.+.++ .+.++.+...+..++.++-..|++
T Consensus 200 l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 200 LEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD 277 (435)
T ss_dssp CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 267788888888877655 457788888888887755 34556666666665 455666777777778787777775
Q ss_pred HHHh-------hhHHHHHhh-----hcC-cchHHHHHHHHHHHHhccccC---h--hhhhhhhHHHHHhhccCCCc
Q 016814 266 WAMQ-------HITPQVLEM-----INN-PHYLYRMTILRAISLLAPVMG---S--EITCSRLLPVVINASKDRVP 323 (382)
Q Consensus 266 ~~~~-------~l~~~l~~~-----l~~-~~~~~r~~a~~~l~~l~~~~~---~--~~~~~~~l~~l~~~l~d~~~ 323 (382)
.+.+ .++..+.+. +.. .+..-|..++-.+.++..... . ...+..+++.+++.+..+..
T Consensus 278 ~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~~ 353 (435)
T PF03378_consen 278 FLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPPE 353 (435)
T ss_dssp HHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCcc
Confidence 4321 122222221 111 233445555555555432222 1 13566777777777765543
No 205
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.37 E-value=0.75 Score=41.75 Aligned_cols=251 Identities=10% Similarity=0.075 Sum_probs=136.1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HHHHHhhhHh
Q 016814 45 SQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPC 118 (382)
Q Consensus 45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~ 118 (382)
..|++|.=-..+-+.+..+.+....+. .....+..++.++.+++++-|......+..+-..+.. ..+...+-..
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345677766777777777776555444 3345788888999999999999988888886554422 2233333344
Q ss_pred hhhhcC-CCchHHHHHHHHHHHhhccccC---hHhHHHhhHHHHHHhhcCCC-hHHHHHHHHhhHHhhhhhchhhHhhhH
Q 016814 119 VKELSS-DSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSL 193 (382)
Q Consensus 119 l~~~~~-d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~~~~~l~~~~~~~~~~~~~~~l 193 (382)
+.+.+. +....--..+.+.++.+...+. ++.....+...+..+.+... .........++..+.+.- ..+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHH
Confidence 444333 2333333455566666655433 12222223333334443332 222333333333333211 1122344
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH---HHHHHHHHHHhccchhHHHHHHHHHHHHH--HHHhChHHHH
Q 016814 194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWAM 268 (382)
Q Consensus 194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~--~~~~~~~~~~ 268 (382)
+..+....--.+..-....+..+..+...+++..+. ..++..+...+.+++..|-+.|+..+..- ...+ ....
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li--~~~~ 334 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI--SQNS 334 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH--HCTH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH--HhCh
Confidence 555555544445555567778888888888776665 34566667788899999999988765432 2222 1123
Q ss_pred hhhHHHHHhhhc-----CcchHHHHHHHHHHHHhcc
Q 016814 269 QHITPQVLEMIN-----NPHYLYRMTILRAISLLAP 299 (382)
Q Consensus 269 ~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~ 299 (382)
..++|.+...+. +-+..+|..+..++..+.+
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456666666543 2345799999999888775
No 206
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.58 Score=40.41 Aligned_cols=177 Identities=13% Similarity=0.052 Sum_probs=114.9
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---HHHhhHHHHHHh
Q 016814 87 NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSL 161 (382)
Q Consensus 87 ~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~ 161 (382)
.+.+-|..|+.-|..++..++.. .+....++.+...+++++..+|..|+..++...+.-++.. .....++.+...
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 45778999999999999887654 3333455666669999999999999999999987665422 223344444443
Q ss_pred -hcCCChHHHHHHHHhhHHhhhhhch--hhHh-hhHHHHHHHHhcC--CCchHHHHHHHHhHHHHhhhc--hhhhHHHHH
Q 016814 162 -LKDEFPDVRLNIISKLDQVNQVIGI--DLLS-QSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLG--VGFFDDKLG 233 (382)
Q Consensus 162 -l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~-~~llp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~ 233 (382)
-.|.+..+|..++-+++.+.....+ +.+. -.=...+...+++ .+.+.+..++..++.+.+.-. .+......+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 4566788899999999888765432 2110 0112344555555 567778888888888775432 222223333
Q ss_pred HH-HHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814 234 AL-CMQWLQDKVYSIRDAAANNLKRLAEEFG 263 (382)
Q Consensus 234 ~~-l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 263 (382)
+. +..+...-++++++.++..+-.+...+.
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 33 3344555678888888887777766543
No 207
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=1.6 Score=45.14 Aligned_cols=149 Identities=9% Similarity=0.010 Sum_probs=70.6
Q ss_pred HHHHHHHHHH-hccchhHHHHHHHHHHHHHHHH--hC-hHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh
Q 016814 230 DKLGALCMQW-LQDKVYSIRDAAANNLKRLAEE--FG-PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 305 (382)
Q Consensus 230 ~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~--~~-~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~ 305 (382)
+.++..+..+ ..+..|++|.++++.+..++-. ++ .+.-++.+.-.+...+.|.+-.+|+.|+.++..+.++-....
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 3444444432 2345667777766666666532 22 233345566666666666666677777777766664322221
Q ss_pred hhhhhHHHHHhhccCCC-ccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcC--CCCc-cHHhHHHHHHHHHHHHhc
Q 016814 306 TCSRLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDV-DVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 306 ~~~~~l~~l~~~l~d~~-~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~--d~~~-~vr~~a~~al~~~~~~~~ 380 (382)
...+.-+.-........ ...+=.+...|+.+.-.++ +.....+|.....+. +.++ .++..+-+++..+.....
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafP--y~vP~wip~~L~~Ls~fa~e~~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFP--YVVPLWIPKPLMNLSSFARESAAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhcc--ccchhhhHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhh
Confidence 11111111111111111 1122334444555444333 223445555555432 3333 366666777666655443
No 208
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=96.31 E-value=0.16 Score=38.64 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=24.6
Q ss_pred HHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814 168 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 220 (382)
Q Consensus 168 ~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 220 (382)
.+|...+..+..++..--++.+ +.+++.+.+.++. +.......+..+..+.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-PDFLEDLLQLLQS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-TTHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC-chHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 3455555555555544444444 4555555555544 2333334444444443
No 209
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.31 E-value=0.51 Score=39.17 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=87.7
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhh
Q 016814 40 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV 119 (382)
Q Consensus 40 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l 119 (382)
++.+..+..+++.....++.|..++..-. .....++..+..+.+.+....+..+...+..+.+.-+.- ...+-+.+
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L 80 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLL 80 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHH
Confidence 34446678888888888888888875432 333446666666667666666666666666665533322 01111222
Q ss_pred hh---------hcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh-cCCChHHHHHHHHhhHHhhhh
Q 016814 120 KE---------LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 120 ~~---------~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~~~~~ 183 (382)
.. .-++..+.+..+...++..++...+. .-..+++.+...+ ++.++.++..+++++..+++.
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 22 11344566666666777777766554 3457888888888 777888888899998888743
No 210
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.28 E-value=0.79 Score=41.07 Aligned_cols=139 Identities=14% Similarity=0.052 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHhhcc------ccChHhHHHhhHHHHHHhhcCCC--hHHHHHHHHhhHH--hhhhhchhhHhhhHHHH
Q 016814 127 SQHVRSALASVIMGMAP------LLGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQ--VNQVIGIDLLSQSLLPA 196 (382)
Q Consensus 127 ~~~vr~~a~~~l~~l~~------~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~--~~~~~~~~~~~~~llp~ 196 (382)
+..+-..|+++++.+.. .++.+. ...++......+.+++ ..+....+..+.. +...+-.....+.++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~-~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDF-ASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 45666777777777653 223222 2234444444444432 3344444443332 11111111222444444
Q ss_pred HHHHhc-CCCchHHHHHHHHhHHHHhhhchhhhH--HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814 197 IVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 266 (382)
Q Consensus 197 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 266 (382)
+..+-+ =++..+-...+..+..+....+..... ...+|.+...+-+....+|..|..........++++.
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~ 210 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNK 210 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhH
Confidence 444432 233445556666666666655543332 3467777777778889999998888877777777643
No 211
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.28 E-value=0.64 Score=40.04 Aligned_cols=175 Identities=11% Similarity=0.108 Sum_probs=124.0
Q ss_pred HHHHHHhcCC-CchHHHHHHHHhHHHHhhhchhhhHH---HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH--HHH
Q 016814 195 PAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAM 268 (382)
Q Consensus 195 p~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~ 268 (382)
..+.+++.-. ...|...+++....+.+.+|++.+.+ -+.|-+..++....-.||-..++.+..+.-.+|.. ...
T Consensus 57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l 136 (307)
T PF04118_consen 57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCL 136 (307)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHH
Confidence 3344444322 23789999999999999999877653 35667777778788899999999988888777762 123
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh------H
Q 016814 269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD------Q 342 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~------~ 342 (382)
..++..++..+.|++...-..+...+..+...++.+.|+..+.-.++ .++.+|..|+..+..-..... .
T Consensus 137 ~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~ 211 (307)
T PF04118_consen 137 KGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLS 211 (307)
T ss_pred HHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccc
Confidence 34555556667778888888889999999988888866665544333 468899999998877665544 1
Q ss_pred H----H----HHHhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814 343 S----M----VEKTIRPCLVELTEDPDVDVRFFATQAIQS 374 (382)
Q Consensus 343 ~----~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 374 (382)
. . -...+..++...++|.+.-|++.+...+-.
T Consensus 212 ~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 212 SEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred hHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 0 0 125677788888888888888876665543
No 212
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.26 E-value=0.16 Score=43.53 Aligned_cols=131 Identities=15% Similarity=0.219 Sum_probs=82.7
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh---hH-----HHHHHHHHHHhc--------cchhHHHHHHHHH
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD-----DKLGALCMQWLQ--------DKVYSIRDAAANN 254 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~-----~~l~~~l~~~l~--------d~~~~vr~~a~~~ 254 (382)
..++|.+..++.|.+..+|..++..+..+....+... +. +.+.+.+...+. +++..+-..+..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 5678888888888888888999988888887766544 22 334455555554 5667777778888
Q ss_pred HHHHHHHhCh-------HHHHhhhHHHHHhhhc----CcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCC
Q 016814 255 LKRLAEEFGP-------EWAMQHITPQVLEMIN----NPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDR 321 (382)
Q Consensus 255 l~~~~~~~~~-------~~~~~~l~~~l~~~l~----~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~ 321 (382)
+-.++..... ..+.+.+...++..+. -++..++...+..+..+...+|.. .+.+.++|.+.+.+.++
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 7777664211 1111222222333222 124677777777777777777754 35667777777766654
No 213
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=96.15 E-value=0.03 Score=38.56 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=49.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccChhhhhhhhHHH
Q 016814 242 DKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEITCSRLLPV 313 (382)
Q Consensus 242 d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~ 313 (382)
++.|.+|+.|++.++.++..++.. .....+...+.+.+.|++ ...+..|+..+..+ |.+.+..-++|.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~ 88 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPN 88 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccC
Confidence 568899999999999999888863 356677777888887664 66777777777766 444444455554
No 214
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.10 E-value=1 Score=40.73 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=62.8
Q ss_pred hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--
Q 016814 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-- 109 (382)
Q Consensus 32 ~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-- 109 (382)
.+..++..++.....--++..|...+.+|.-+-.. .-.....++..|+.++.-.+...|..+...+...++.+...
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk--~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~k 93 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNK--NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHK 93 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc--CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcc
Confidence 34556777777776667889999999998755421 12222457888888887777788998888887777755332
Q ss_pred --HHHHhhhHhhhhhcCCCchH
Q 016814 110 --LAIQHILPCVKELSSDSSQH 129 (382)
Q Consensus 110 --~~~~~il~~l~~~~~d~~~~ 129 (382)
.....+-..+..++.++++.
T Consensus 94 n~klnkslq~~~fsml~~~d~~ 115 (616)
T KOG2229|consen 94 NDKLNKSLQAFMFSMLDQSDST 115 (616)
T ss_pred cchHHHHHHHHHHHHHhCCCch
Confidence 12223334556667766664
No 215
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.01 E-value=0.41 Score=37.26 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHH---hhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh-
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE- 304 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~- 304 (382)
+.+...+..++++++++-|..++..+...++..|.+.+. ...+..+...++.++ ..++..++.++..+.......
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555666667767777777777777777665554432 234444555555443 556667777766665433321
Q ss_pred --------hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814 305 --------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 305 --------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 341 (382)
+....+++.+++.+++ ......++.+|..+...+.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 1234455555666655 5567777777777776654
No 216
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.91 Score=38.42 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=41.0
Q ss_pred CCCccHHHHHHHHHHHHhhhh-hHHHH-HHhHHHHHHHhc-CCCCccHHhHHHHHHHHHHH
Q 016814 320 DRVPNIKFNVAKVLQSLIPIV-DQSMV-EKTIRPCLVELT-EDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 320 d~~~~vR~~a~~~l~~i~~~~-~~~~~-~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~~~ 377 (382)
++.+.+|...++++-.+...- |-+.+ ...+.|.+..+- ..+++++|....+.++.+..
T Consensus 255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 556789999999998876543 43333 356777777753 45788899888887776654
No 217
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.90 E-value=0.51 Score=43.09 Aligned_cols=139 Identities=15% Similarity=0.192 Sum_probs=89.2
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCC--------CchHHHHHHHHhHHHHhh--h
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--------HWRVRLAIIEYIPLLASQ--L 223 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~--------~~~vr~~~~~~l~~l~~~--~ 223 (382)
.+.-+.+.+...++..|..++++|.. |.-.+.++|.|..++.+. |-+.-..+++....+... +
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 33445556666788999988887754 222377888888776432 222222222222222221 1
Q ss_pred chhhhHHHHHHHHHHHh----------ccchhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCc--chHHHHH
Q 016814 224 GVGFFDDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMT 289 (382)
Q Consensus 224 ~~~~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~--~~~~r~~ 289 (382)
.-+.+..+++|.++.++ .|+.|.+|.-|+..+..+++.++... ....++..+...+.|+ .+.....
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 12344567888877654 46789999999999999999988643 4556777777777775 3777888
Q ss_pred HHHHHHHhcc
Q 016814 290 ILRAISLLAP 299 (382)
Q Consensus 290 a~~~l~~l~~ 299 (382)
++..+..++.
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 8888877764
No 218
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.88 E-value=1.1 Score=39.23 Aligned_cols=188 Identities=15% Similarity=0.084 Sum_probs=112.9
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-------HH--H-HhhhHhhhhhcCCCchHHHHHHHHHHHhhc
Q 016814 73 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LA--I-QHILPCVKELSSDSSQHVRSALASVIMGMA 142 (382)
Q Consensus 73 ~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-------~~--~-~~il~~l~~~~~d~~~~vr~~a~~~l~~l~ 142 (382)
...+++.++..+..=+.+.|+.+...+..+.+.-..+ .. . ..++..+....++++... .+-..+...+
T Consensus 74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~ 151 (335)
T PF08569_consen 74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECI 151 (335)
T ss_dssp HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHT
T ss_pred HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHH
Confidence 3567888888888889999999999999887753111 11 1 345566666555544321 2222222222
Q ss_pred ccc--ChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhhHh---hhHHHHHHHHhcCCCchHHHHHHH
Q 016814 143 PLL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLS---QSLLPAIVELAEDRHWRVRLAIIE 214 (382)
Q Consensus 143 ~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~---~~~~~---~~llp~l~~~~~d~~~~vr~~~~~ 214 (382)
+.- ......+..+-.+.+.+..++.++-..+...+..+..... .+.+. +.+...+..++.++|+-+|+..++
T Consensus 152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 110 0111112333335567777888888888888777543321 11111 445667788889999999999999
Q ss_pred HhHHHHhhhch-hh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814 215 YIPLLASQLGV-GF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 262 (382)
Q Consensus 215 ~l~~l~~~~~~-~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 262 (382)
.|+.+...-.. .. -.+.-+..++.+|+|++..+|-.|.+.+.-++.+-
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99988643221 11 12456778889999999999999999998888653
No 219
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=95.84 E-value=0.046 Score=37.63 Aligned_cols=71 Identities=21% Similarity=0.372 Sum_probs=53.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhh
Q 016814 46 QDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILPCVK 120 (382)
Q Consensus 46 ~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~ 120 (382)
.|++|.+|..|++.++.++..++.. .....+...+.+.+.|++ ...+..|+.+|..+ |++.+..-++|.+.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK 90 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence 4678999999999999999999874 344568888888888764 56788888888876 44544445666543
No 220
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.73 E-value=1.4 Score=39.24 Aligned_cols=108 Identities=10% Similarity=0.150 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhh-----cCcchHHHHHHHHHHHHhc-ccc
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMI-----NNPHYLYRMTILRAISLLA-PVM 301 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l-----~~~~~~~r~~a~~~l~~l~-~~~ 301 (382)
++++..+..++.+.+......+.-++|.|+..=.. ....++++..+++.+ .|.+.+...+++.++..+. +..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 56888899999999999999999999999874221 122334444444443 4667888889999999875 333
Q ss_pred Chhhhh-hhhHHHHHhhccCCCccHHHHHHHHHHHHh
Q 016814 302 GSEITC-SRLLPVVINASKDRVPNIKFNVAKVLQSLI 337 (382)
Q Consensus 302 ~~~~~~-~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 337 (382)
+...+. .-+...++..++-..|.|...-+.++..+.
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR 430 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 333222 335556777788788888877776666554
No 221
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.70 E-value=0.32 Score=36.77 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=72.3
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhh
Q 016814 45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVK 120 (382)
Q Consensus 45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~ 120 (382)
...+||..=...|..+.. . .....+.+..+.+.+.+.++.|...|+..+..+.+.+|.. .....++..+.
T Consensus 13 l~~~dw~~il~icD~I~~-----~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 13 LTSENWGLILDVCDKVKS-----D-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred CCCcCHHHHHHHHHHHhc-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 345677665555555542 1 2223457788888888899999999999999999999875 23446777788
Q ss_pred hhcCC-CchHHHHHHHHHHHhhccccChH
Q 016814 121 ELSSD-SSQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 121 ~~~~d-~~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
.++.+ .++.|+..+...+..++..+..+
T Consensus 87 kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 87 KLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 88877 77889999999999988777643
No 222
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=95.70 E-value=1.3 Score=38.76 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcC
Q 016814 51 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 124 (382)
Q Consensus 51 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~ 124 (382)
..++.+.+.+++.-+.+++-. ...+..-+.++.|.+..||..|++.|..+++. .....+.+.+.++++
T Consensus 39 k~k~lasq~ip~~fk~fp~la--~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSLA--DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHHHHhhCchhh--hHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence 456677777777777665532 23466667788888888888888888887764 233455566666654
No 223
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.66 E-value=0.71 Score=42.21 Aligned_cols=139 Identities=16% Similarity=0.295 Sum_probs=91.8
Q ss_pred hhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC-hHHHH---HHHHhhHHhhhhh------
Q 016814 115 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF-PDVRL---NIISKLDQVNQVI------ 184 (382)
Q Consensus 115 il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~---~~~~~l~~~~~~~------ 184 (382)
....+.+.+.+.++..|..|...|..=. | ...++|.|..++.+.- ..+-. ..+..+..+...+
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~TDs---G----L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLETDS---G----LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCc---c----HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 3444555666688889999887765422 2 4678888888876532 11111 1222233333222
Q ss_pred chhhHhhhHHHHHHHHh----------cCCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhccc--hhHHHHH
Q 016814 185 GIDLLSQSLLPAIVELA----------EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK--VYSIRDA 250 (382)
Q Consensus 185 ~~~~~~~~llp~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~ 250 (382)
--+.+...++|.+..++ .|.+|.+|--++..+..++..++... ..+.+...+.+.+.|+ .+.....
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 22456688999998875 47789999999999999999887543 3455667777777775 5677888
Q ss_pred HHHHHHHHHH
Q 016814 251 AANNLKRLAE 260 (382)
Q Consensus 251 a~~~l~~~~~ 260 (382)
++..|..+..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 8888877654
No 224
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=1.2 Score=37.74 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=65.9
Q ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC-HHHHHHhhh
Q 016814 41 IVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PELAIQHIL 116 (382)
Q Consensus 41 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il 116 (382)
+.+++.+.+|.||+.|++.+..+... +... +....++.+.+++++..+ -.-|+.++.++..... .+...+.++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677888999999999887766544 2221 123478888999988776 3345566666655332 122333466
Q ss_pred HhhhhhcCCCchHHHHHHHHHHHhhcc
Q 016814 117 PCVKELSSDSSQHVRSALASVIMGMAP 143 (382)
Q Consensus 117 ~~l~~~~~d~~~~vr~~a~~~l~~l~~ 143 (382)
..+...+.|+.+..-...+..+.++++
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 666777778777777777788877765
No 225
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.54 E-value=5.7 Score=45.01 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=159.9
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh----C-HH-----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----N-PE-----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 144 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~----~-~~-----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 144 (382)
..++.+.+.+..++..++.++..++..+.... + ++ .+...+++.+.+++.|+.|.-|.+.+..++.+...
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 37899999999999999999999998875543 2 11 45678889999999999999999999988888877
Q ss_pred cChHhHH---HhhHHHHHHhhcCCChHHHH----HHHHhhHHh----hhhhchh----hHhhhHHHHHHHHhcCCCchHH
Q 016814 145 LGKDATI---EQLLPIFLSLLKDEFPDVRL----NIISKLDQV----NQVIGID----LLSQSLLPAIVELAEDRHWRVR 209 (382)
Q Consensus 145 ~~~~~~~---~~l~~~l~~~l~d~~~~vr~----~~~~~l~~~----~~~~~~~----~~~~~llp~l~~~~~d~~~~vr 209 (382)
++..... ..++..+...+.|...++-. .+-..+..+ ....+.+ .....++..+..-+.+++..||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 6632222 23333344444443222221 111122221 1111111 1123445555555678888999
Q ss_pred HHHHHHhHHHHhhhchhhhH------HHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH--Hhhh------HHH
Q 016814 210 LAIIEYIPLLASQLGVGFFD------DKL-GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHI------TPQ 274 (382)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~~------~~l-~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l------~~~ 274 (382)
..+...+..+++..|.+... +-+ .|.+...+..-...+.-..+.++...+. .+++.+ ...+ +..
T Consensus 1144 ~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~-l~p~~f~~~~~l~~l~~~~~~ 1222 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS-LGPCLFDFTEELYRLKRFLIA 1222 (3550)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH-cCCcccCchHHHHHHHHHHHH
Confidence 99999999999877654321 111 2222222222223333333444333332 333211 1101 111
Q ss_pred HHh--------hhcCc-------chHHHHHHHHHHHHhccccC-----hhhhhhhhHHHHHhhccCCCccHHHHHHHHHH
Q 016814 275 VLE--------MINNP-------HYLYRMTILRAISLLAPVMG-----SEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334 (382)
Q Consensus 275 l~~--------~l~~~-------~~~~r~~a~~~l~~l~~~~~-----~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~ 334 (382)
+.. ..+.. ....|.++...+........ ..++.++++-.+++.+..+.+++-..+...+.
T Consensus 1223 La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~ 1302 (3550)
T KOG0889|consen 1223 LADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLR 1302 (3550)
T ss_pred hhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 100 11111 12357777776665432221 12467889999999999889999988888887
Q ss_pred HHhhh---hhHHHHHHhHHHHHHHhc
Q 016814 335 SLIPI---VDQSMVEKTIRPCLVELT 357 (382)
Q Consensus 335 ~i~~~---~~~~~~~~~i~~~l~~l~ 357 (382)
..... ++.+......-|.+..+.
T Consensus 1303 ~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1303 KVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred hhhhccccccHHHHHhhHHHHHHhhh
Confidence 76543 333444444445555443
No 226
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.53 E-value=0.68 Score=40.42 Aligned_cols=143 Identities=12% Similarity=0.102 Sum_probs=77.0
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH--HhhhHHHHHhhhcC----cchHHHHHHHHHHHHhccccC--hhh
Q 016814 234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINN----PHYLYRMTILRAISLLAPVMG--SEI 305 (382)
Q Consensus 234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l~~----~~~~~r~~a~~~l~~l~~~~~--~~~ 305 (382)
..+.+.+..+++.++..|+..++.++...+.... ...+++.+++.+.+ ++......++.+++.+...-. ...
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f 187 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF 187 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH
Confidence 3444578888999999999999999976554322 13566777666654 445567888999998874422 223
Q ss_pred hhhhhHHHHHhhc-----cCCCccHHHHHHHHHHHHhhhhhHH----HHHHhHHHHHHHhcCC-CCccHHhHHHHHHHHH
Q 016814 306 TCSRLLPVVINAS-----KDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTED-PDVDVRFFATQAIQSI 375 (382)
Q Consensus 306 ~~~~~l~~l~~~l-----~d~~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~~~ 375 (382)
.....++.+...+ .+....+...---.+..+.-.+.++ .....++|.+..++.+ +..+|-+-+..++..+
T Consensus 188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl 267 (312)
T PF03224_consen 188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL 267 (312)
T ss_dssp HTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3456667777777 3333333333333333333333332 2234577777776554 3444555555555544
Q ss_pred H
Q 016814 376 D 376 (382)
Q Consensus 376 ~ 376 (382)
.
T Consensus 268 ~ 268 (312)
T PF03224_consen 268 L 268 (312)
T ss_dssp T
T ss_pred H
Confidence 3
No 227
>PF05536 Neurochondrin: Neurochondrin
Probab=95.51 E-value=2.3 Score=40.23 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=111.6
Q ss_pred chHHHHHHHHHHHhhccccChH----hHHHhhHHHHHHhhcCCCh-HHHHHHHHhhHHhhhh-hchhhHh-hhHHHHHHH
Q 016814 127 SQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQV-IGIDLLS-QSLLPAIVE 199 (382)
Q Consensus 127 ~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~~~~~-~~~~~~~-~~llp~l~~ 199 (382)
....+..++..++.++. .++ ...-.-+|.+.+.+...+. .+...+.+.+..++.. -|.+.+. ...+|.+.+
T Consensus 70 ~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence 34567777888888875 222 1234556888888777666 7888888888877633 1222221 235666666
Q ss_pred HhcCCCchHHHHHHHHhHHHHhhhchhhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--------H
Q 016814 200 LAEDRHWRVRLAIIEYIPLLASQLGVGFFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--------E 265 (382)
Q Consensus 200 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--------~ 265 (382)
...+ +......++..+..+....+.+.+. ..+++.+...........+-.+++.++.+....+. +
T Consensus 148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~ 226 (543)
T PF05536_consen 148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP 226 (543)
T ss_pred HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence 6655 5556677777777776666543322 24455555555555566677778888888766521 2
Q ss_pred HHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhccccChhh
Q 016814 266 WAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEI 305 (382)
Q Consensus 266 ~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~ 305 (382)
.....+...+...+.++ ....|..++.....+.+.+|.++
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence 24455666666767654 47788889888888888887653
No 228
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=95.51 E-value=0.015 Score=33.19 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=17.1
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHH
Q 016814 74 MDLVPAYVRLLRDNEAEVRIAAAGK 98 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~~VR~~a~~~ 98 (382)
+.+...+...+.|+++.||++|++.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3566667777777777777777654
No 229
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.45 E-value=2 Score=39.25 Aligned_cols=212 Identities=8% Similarity=0.073 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHHhhccccCh--HhHHHhhHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhch---h---hHhhhHHHHH
Q 016814 127 SQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGI---D---LLSQSLLPAI 197 (382)
Q Consensus 127 ~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr~~~~~~l~~~~~~~~~---~---~~~~~llp~l 197 (382)
++.+-++..+.+..+.+.+.+ ....+.+..++....+++ +|.----..++++.+.+.... + .+.+.++|.+
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f 122 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF 122 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 444444444444444333322 112344555555555553 355555566666666655432 2 3456778888
Q ss_pred HHHhcCCCchHHHHHHHHhHHHHhhhchhhhH---HHHHHHHHHHhccchhHHH---HHHHHHHHHHHHHhChHH----H
Q 016814 198 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIR---DAAANNLKRLAEEFGPEW----A 267 (382)
Q Consensus 198 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr---~~a~~~l~~~~~~~~~~~----~ 267 (382)
...+..+-.+.---+.+.++.+.+........ ..++|.+ +...-|+-| -+....+..+++.-+... .
T Consensus 123 ~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~L---l~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~ 199 (435)
T PF03378_consen 123 QEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPL---LSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQ 199 (435)
T ss_dssp HHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHH---TSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH---cCcchhccCCCcCcHHHHHHHHHHhCchhhcchhh
Confidence 88777665544455566666666544411111 2233333 333333311 333444555554433321 2
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhcc-CCCccHHHHHHHHHHHHhhhhhHH
Q 016814 268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS 343 (382)
Q Consensus 268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~i~~~~~~~ 343 (382)
.+.++..+-.++.++... ..+.+.+..+...++.+ .+...++..++..+. .+.+..+...+..++.++...|++
T Consensus 200 l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 200 LEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD 277 (435)
T ss_dssp CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 234555565666655422 34667777777777765 355666666666554 444555666666666665555543
No 230
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.44 E-value=3.1 Score=46.89 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh----ChH------HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF----GPE------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 299 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~~~------~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 299 (382)
..+++.+...+...+.+++.....++..+.... |.. .+...+++.+..+.-++.|..|...+..++.+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 467888999999999999999999988886543 321 2445677788888889999999999999998887
Q ss_pred ccChhh---hhhhhHHHHHhhccCCCccHHH----HHHHHHHHHhhhhhHH--------HHHHhHHHHHHHhcCCCCccH
Q 016814 300 VMGSEI---TCSRLLPVVINASKDRVPNIKF----NVAKVLQSLIPIVDQS--------MVEKTIRPCLVELTEDPDVDV 364 (382)
Q Consensus 300 ~~~~~~---~~~~~l~~l~~~l~d~~~~vR~----~a~~~l~~i~~~~~~~--------~~~~~i~~~l~~l~~d~~~~v 364 (382)
.....+ +...++..+...++|...++.. .+-..+..+...+-.+ .....+...+..-+.+|+..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 777442 3455666667777776555444 3333333333322211 223344444444456788899
Q ss_pred HhHHHHHHHHHHHHhcc
Q 016814 365 RFFATQAIQSIDHVMMS 381 (382)
Q Consensus 365 r~~a~~al~~~~~~~~~ 381 (382)
|..+.+.+..++...|.
T Consensus 1143 R~~~~~~L~~i~~~s~~ 1159 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGK 1159 (3550)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999988764
No 231
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=95.38 E-value=0.33 Score=36.84 Aligned_cols=55 Identities=22% Similarity=0.073 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHh
Q 016814 11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67 (382)
Q Consensus 11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~ 67 (382)
+.||...+.++..++...-|+ .|+.+++.+.+..+. ++.......+.|..+.+.+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~-~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi 56 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQ-QWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEI 56 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChh-hCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Confidence 345666666666666654332 356666666666555 3455555555555555433
No 232
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.37 E-value=2 Score=39.38 Aligned_cols=79 Identities=19% Similarity=0.116 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhH---HHhhHHHHHHhhcC
Q 016814 88 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKD 164 (382)
Q Consensus 88 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d 164 (382)
-..-|..|+++||.++..++.+.....+-+.+..++++++..-|..++..+..++........ .+.+.+.+.+.+++
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 356799999999999999876654444445788899999999999999999999876653221 24666777777775
Q ss_pred CC
Q 016814 165 EF 166 (382)
Q Consensus 165 ~~ 166 (382)
+.
T Consensus 180 ~~ 181 (441)
T PF12054_consen 180 PE 181 (441)
T ss_pred CC
Confidence 43
No 233
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.37 E-value=0.29 Score=36.97 Aligned_cols=97 Identities=12% Similarity=0.176 Sum_probs=65.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh----hhhhhhHHHHH
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVI 315 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~ 315 (382)
+..++|..-...+..+..= ..|+ ...+..+...+.++++.+...|+..+..+.++||.. .....++..+.
T Consensus 13 l~~~dw~~il~icD~I~~~--~~~~----k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 13 LTSENWGLILDVCDKVKSD--ENGA----KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred CCCcCHHHHHHHHHHHhcC--CccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 3445665544444444321 1122 346667777778888888888888888888888864 23456677777
Q ss_pred hhccC-CCccHHHHHHHHHHHHhhhhhH
Q 016814 316 NASKD-RVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 316 ~~l~d-~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
+++.+ .++.||..++..+..++..+..
T Consensus 87 kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 87 KLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 77777 5677888888888888877764
No 234
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=2.9 Score=40.31 Aligned_cols=285 Identities=14% Similarity=0.120 Sum_probs=149.7
Q ss_pred CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhC--Cccccc---chHHHHHH
Q 016814 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG--PEPTRM---DLVPAYVR 82 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~--~~~~~~---~ll~~l~~ 82 (382)
..-.+|+..+-.++.....--+.+..+.+.-.+..+++|. |-.||-++++.+.-+.+.+. ++.+.+ .+...+.+
T Consensus 499 ~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfk 578 (978)
T KOG1993|consen 499 NSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFK 578 (978)
T ss_pred chhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHH
Confidence 3456789999999988876556666666777777888888 67889999999887776443 222211 12223333
Q ss_pred hcCC-CcHHHHHHHHHHHHHHHHhhCHH-----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhh
Q 016814 83 LLRD-NEAEVRIAAAGKVTKFCRILNPE-----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQL 154 (382)
Q Consensus 83 ~l~d-~~~~VR~~a~~~l~~l~~~~~~~-----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l 154 (382)
++.. ++-+-|...+..++.++...+.- ...-.++|.+.+-.+ +.+-.|.+...++.++...+|.+. ..+-+
T Consensus 579 ll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL 657 (978)
T KOG1993|consen 579 LLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFL 657 (978)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence 3332 23445677777777777665433 112245566555544 567789999999999999888643 34666
Q ss_pred HHHHHHhhcCCChHH---HHHHHHhhHHhhhhhc--hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH
Q 016814 155 LPIFLSLLKDEFPDV---RLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 229 (382)
Q Consensus 155 ~~~l~~~l~d~~~~v---r~~~~~~l~~~~~~~~--~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 229 (382)
+|.+.....-++|+- -+....-...+..+.. .+.+ -.+.|.+...+.-..... ..+++.+....-..++.+..
T Consensus 658 ~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~l-l~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~ 735 (978)
T KOG1993|consen 658 YPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPEL-LLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLN 735 (978)
T ss_pred HHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHH-HHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHH
Confidence 677665554444432 2222222222222211 1122 345666666554333222 22333333322222333222
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh------HHHHhhhHHHHHhhh--cCcchHHHHHHHHHHHHh
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP------EWAMQHITPQVLEMI--NNPHYLYRMTILRAISLL 297 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~l--~~~~~~~r~~a~~~l~~l 297 (382)
.. ..-+.+.+.+--.+||.....++-++.+.+=. ..+...++|.++..+ +++.+.+--..+..++.+
T Consensus 736 ~y-~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi 810 (978)
T KOG1993|consen 736 DY-AFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARI 810 (978)
T ss_pred HH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 22 12222223333344555555554444433211 112234555555433 445555555555555544
No 235
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=95.20 E-value=1.3 Score=35.38 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=55.6
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 016814 35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 106 (382)
Q Consensus 35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~ 106 (382)
+..++-+.+++-+++..+|..+++.+..+.+..=-. ..+.+|.++.+..|+++.+|..|...+..+.+..
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn--P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN--PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC--hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 455666777888999999999999999877522112 2357999999999999999999999999886644
No 236
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=2.7 Score=38.72 Aligned_cols=293 Identities=14% Similarity=0.129 Sum_probs=157.6
Q ss_pred chHHHHHHhcCCC---cHHHHHHHHHHHHHHHH--hhCHHHHHH--hhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh
Q 016814 75 DLVPAYVRLLRDN---EAEVRIAAAGKVTKFCR--ILNPELAIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 75 ~ll~~l~~~l~d~---~~~VR~~a~~~l~~l~~--~~~~~~~~~--~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 147 (382)
.++..+..+++++ +..+-..+++++++-.. .+.++.+.. .++......+++. ..-..+..++..+......
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~~ 230 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDD--ELHEEATECICALLYCSLD 230 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhhh
Confidence 3555555555443 35677778888887766 456664433 3455556666643 3344555555544322210
Q ss_pred -H--------hH-HHhhHHHHHH-hhcCCChHHHHHHHHhhHHhhhhh------chhhHhhhHHHHHHHHhcCCCchHHH
Q 016814 148 -D--------AT-IEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVI------GIDLLSQSLLPAIVELAEDRHWRVRL 210 (382)
Q Consensus 148 -~--------~~-~~~l~~~l~~-~l~d~~~~vr~~~~~~l~~~~~~~------~~~~~~~~llp~l~~~~~d~~~~vr~ 210 (382)
+ .+ ...++|...+ ....++.+-+.+...-+..+++.. +++.+ -.++..+.-..+.++|+|-.
T Consensus 231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie 309 (559)
T KOG2081|consen 231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIE 309 (559)
T ss_pred hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhh
Confidence 0 00 1223332222 234456666666666666665543 22222 23344444455677776655
Q ss_pred HHHHHhHHHHhhhc---h----hhhHHH---HHHHHHHHhc------------cchhHHHHHHHHHHHHHHHHhChHHHH
Q 016814 211 AIIEYIPLLASQLG---V----GFFDDK---LGALCMQWLQ------------DKVYSIRDAAANNLKRLAEEFGPEWAM 268 (382)
Q Consensus 211 ~~~~~l~~l~~~~~---~----~~~~~~---l~~~l~~~l~------------d~~~~vr~~a~~~l~~~~~~~~~~~~~ 268 (382)
.....-..+.+.+- . ..|.+. ++..+..-.+ ++-.+-|......+..++...|.....
T Consensus 310 ~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~l 389 (559)
T KOG2081|consen 310 ASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECL 389 (559)
T ss_pred hhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 54444433333221 1 111222 2222222111 123467888899999999888886554
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhcc--CCCccHHHHHHHHHHHHhhhhhHHH-H
Q 016814 269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSM-V 345 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~--d~~~~vR~~a~~~l~~i~~~~~~~~-~ 345 (382)
+++.-.+.+ .++.|..-++++..+..++.+..++ .+.++|.+++... +....+|..++..+|.+.+.+.... .
T Consensus 390 k~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~ 465 (559)
T KOG2081|consen 390 KQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPEL 465 (559)
T ss_pred HHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHH
Confidence 544444444 4667999999999999999888864 3556666665543 2234499999999999887765432 2
Q ss_pred HHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 346 EKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 346 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
..-++..+.....+.. .-..++.++..+.
T Consensus 466 le~v~~~~~~~~~~~~--~as~~a~~~~~i~ 494 (559)
T KOG2081|consen 466 LEPVLRYIRQGLQLKR--LASAAALAFHRIC 494 (559)
T ss_pred HHHHHHHHHHHhhhcc--hhHHHHHHHHHHH
Confidence 2233333333333322 4445555554443
No 237
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.58 Score=41.06 Aligned_cols=107 Identities=15% Similarity=0.032 Sum_probs=58.7
Q ss_pred HHHhcCCCchHHHHHHHHhHHHHhhhchhhh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH---HHhhhH
Q 016814 198 VELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHIT 272 (382)
Q Consensus 198 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~ 272 (382)
..-+++.|-.+|..+...+..+......... ...+++-+..+..|.+..||.+..+.+..++....++. +...++
T Consensus 64 l~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~ 143 (393)
T KOG2149|consen 64 LSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM 143 (393)
T ss_pred HhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence 3334566666666666666665554211111 12234444445566666666666666666655554433 334455
Q ss_pred HHHHhhhcCcchHHHHHHHHHHHHhccccChh
Q 016814 273 PQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304 (382)
Q Consensus 273 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 304 (382)
|++...+.+..+.+|.-+...+..+...+++.
T Consensus 144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 55555556666666666666666666666554
No 238
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.8 Score=40.26 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=89.3
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---H
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---T 150 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~ 150 (382)
-+.-+...+...+..||+.|+..+..+....+.+ .....+++.+.++.-|.+..||......+..++....++. .
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 3555556678899999999999999988874333 2345678888889999999999999999998776666544 3
Q ss_pred HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814 151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187 (382)
Q Consensus 151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~ 187 (382)
...+.+++...+....+++|..+.+.+..+...+++.
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 4667788888888889999999999999988887754
No 239
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.96 E-value=0.74 Score=34.51 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=62.2
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHH
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVI 315 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~ 315 (382)
+.+++|..-...+..+.. ..-|+ ...+..+...+.++++.+...|+..+..+.++||..+ ....++..+.
T Consensus 14 l~~~dw~~ileicD~In~--~~~~~----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 14 NREEDWEAIQAFCEQINK--EPEGP----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred CCCCCHHHHHHHHHHHHc--CCccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence 445566554444444432 11121 3355667777788888888888888888888888652 2345666667
Q ss_pred hhccC------CCccHHHHHHHHHHHHhhhhh
Q 016814 316 NASKD------RVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 316 ~~l~d------~~~~vR~~a~~~l~~i~~~~~ 341 (382)
+.+.+ .+..||..++..+..+...++
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 76643 456799999998888887765
No 240
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=2.2 Score=44.30 Aligned_cols=150 Identities=14% Similarity=0.171 Sum_probs=96.0
Q ss_pred hhHHHHHHH-HhcCCCchHHHHHHHHhHHHHh--hhc-hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814 191 QSLLPAIVE-LAEDRHWRVRLAIIEYIPLLAS--QLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 266 (382)
Q Consensus 191 ~~llp~l~~-~~~d~~~~vr~~~~~~l~~l~~--~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 266 (382)
..++..+.. ...+.+|++|.+.+..+....- .++ .+.-.+.+...+..++.|.+.+||+.|+.++.-+...- ...
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s-~~~ 1603 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS-KFQ 1603 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc-ccc
Confidence 445555553 3456789999999988876643 223 33334678888999999999999999999999988632 211
Q ss_pred HHhhhHHHHHhhhc--CcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814 267 AMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 267 ~~~~l~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
+..+......+... ......+..|...++.++-.++.. .+..+.+..+-....++ ..++.++-+++..+......
T Consensus 1604 ~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1604 FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhh
Confidence 22222223333222 234667788888998887665532 23334444444444554 66888888888888765543
No 241
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.80 E-value=2.8 Score=37.39 Aligned_cols=331 Identities=12% Similarity=0.018 Sum_probs=152.5
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhC------CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHH---
Q 016814 44 FSQDKSWRVRYMVANQLYELCEAVG------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAI--- 112 (382)
Q Consensus 44 ~~~d~~~~vR~~a~~~l~~l~~~~~------~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~--- 112 (382)
.+.-.+..||....++++.++..-- ....-...+..+.+..++++.+|-..+.++|++++-.-... .+.
T Consensus 50 ~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lg 129 (604)
T KOG4500|consen 50 GIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLG 129 (604)
T ss_pred ceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence 3344455788888888877764211 11122346777778888888899999999999987543221 111
Q ss_pred --HhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc-ChH-----hHHHhhHHHHHHhh--cCCChHHHHHHHHhhHHhhh
Q 016814 113 --QHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKD-----ATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQ 182 (382)
Q Consensus 113 --~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~~~~l~~~l~~~l--~d~~~~vr~~~~~~l~~~~~ 182 (382)
+.++..+...+...++.-.+-..-..+.+...+ +.+ ...-.++|-+...+ .-.+...-..+.-.+..+.+
T Consensus 130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls 209 (604)
T KOG4500|consen 130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLS 209 (604)
T ss_pred CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHH
Confidence 124555555554444322211111122221111 111 11123333332222 11222333333333333322
Q ss_pred hhch----hhHhhhHHHHHHHHh-cCCCchHHHHHHHHhHHHHhhhch--hhhHHHHHHHHHHHhcc-chhHHHHHHHHH
Q 016814 183 VIGI----DLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQD-KVYSIRDAAANN 254 (382)
Q Consensus 183 ~~~~----~~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~ 254 (382)
.... ..+...+.-.+.+++ ..-++..+.-+.+.+...++.--. ......++..+..+... ++..-+..+...
T Consensus 210 ~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l 289 (604)
T KOG4500|consen 210 FVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNL 289 (604)
T ss_pred HHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHH
Confidence 2211 111111222222222 122344445555555554432110 01111122222222221 111111122222
Q ss_pred HHHHHHH-----hChHHH-----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhc----
Q 016814 255 LKRLAEE-----FGPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINAS---- 318 (382)
Q Consensus 255 l~~~~~~-----~~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l---- 318 (382)
+...++. .|.+.+ ..+++..+..++.+.+.....++.-+++.+++.=..- ...+.++..++.++
T Consensus 290 ~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 290 FKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred HHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222211 244331 2347788888888888889999999999998653321 22334444444433
Q ss_pred -cCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814 319 -KDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQS 374 (382)
Q Consensus 319 -~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 374 (382)
.|.+..+.-+++.+|..+.-...+. .....+..++...++-..+.|...-.-.+.-
T Consensus 370 ~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM 428 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRM 428 (604)
T ss_pred CCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3556677788889998887654432 2233344445555555555555554444443
No 242
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.79 E-value=1.8 Score=35.22 Aligned_cols=133 Identities=14% Similarity=0.182 Sum_probs=75.3
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcC-CCchHHHHH-HHHhHHHHhhhchhhhHH
Q 016814 153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAI-IEYIPLLASQLGVGFFDD 230 (382)
Q Consensus 153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d-~~~~vr~~~-~~~l~~l~~~~~~~~~~~ 230 (382)
........+..+...+.|..++..+.......+ ...++.+...+.+ ++|.+--.+ ...++.+.... +
T Consensus 51 ~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~ 119 (213)
T PF08713_consen 51 ELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------P 119 (213)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------G
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------H
Confidence 344556666667666666666655554333222 2244555554433 355544443 22233332211 3
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 300 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 300 (382)
.+.+.+...+.+++..+|..++..+-.+... ...+.++..+...+.|+++.+|.+...++..++..
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 4666777778887777777777665444433 22345666666777777888888888888777754
No 243
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.79 E-value=1.3 Score=37.26 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=81.5
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc------chHHHHHHHHHHHHhcccc--Chhhhhhh
Q 016814 238 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP------HYLYRMTILRAISLLAPVM--GSEITCSR 309 (382)
Q Consensus 238 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~------~~~~r~~a~~~l~~l~~~~--~~~~~~~~ 309 (382)
.++...+...|.+|+.++.. +.-..+++|.++.++.+. +-..-.+.......+.++- =.+++..+
T Consensus 205 al~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hq 277 (450)
T COG5095 205 ALLDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQ 277 (450)
T ss_pred HHHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHH
Confidence 33555677888888887643 222356777777766542 3334445555555555442 24568888
Q ss_pred hHHHHHhhcc------CCC----ccHHHHHHHHHHHHhhhhhHHHH--HHhHHHHHHHhcCC--CCccHHhHHHHHHHHH
Q 016814 310 LLPVVINASK------DRV----PNIKFNVAKVLQSLIPIVDQSMV--EKTIRPCLVELTED--PDVDVRFFATQAIQSI 375 (382)
Q Consensus 310 ~l~~l~~~l~------d~~----~~vR~~a~~~l~~i~~~~~~~~~--~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~ 375 (382)
++|.++.++- +++ ..+|..|+..++.....++..+. ...+...+.+..-| ........|.+++..+
T Consensus 278 lmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l 357 (450)
T COG5095 278 LMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSIL 357 (450)
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhh
Confidence 8888776542 222 24999999999999998887642 35566666664434 3334556666666554
Q ss_pred H
Q 016814 376 D 376 (382)
Q Consensus 376 ~ 376 (382)
.
T Consensus 358 ~ 358 (450)
T COG5095 358 S 358 (450)
T ss_pred c
Confidence 3
No 244
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.78 E-value=1.1 Score=33.87 Aligned_cols=97 Identities=11% Similarity=0.123 Sum_probs=69.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhh
Q 016814 46 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKE 121 (382)
Q Consensus 46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~ 121 (382)
.++||..=...|..+.. ......+.+-.+.+.+++.++.|...|+..|..+.+.+|.. .....++..+..
T Consensus 18 ~~~dw~~ileicD~In~------~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~ 91 (142)
T cd03569 18 GEPDLASILEICDMIRS------KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD 91 (142)
T ss_pred CccCHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 45666666666665541 11223457778888888899999999999999999998875 223456666666
Q ss_pred hcC-CCchHHHHHHHHHHHhhccccChH
Q 016814 122 LSS-DSSQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 122 ~~~-d~~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
++. ..++.|+..++..+..++..++.+
T Consensus 92 l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 92 LIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 665 566789999999999888777644
No 245
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.74 E-value=1.1 Score=33.72 Aligned_cols=72 Identities=6% Similarity=0.072 Sum_probs=38.7
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh----hhhhhhHHHHHhhcc-CCCccHHHHHHHHHHHHhhhhh
Q 016814 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~i~~~~~ 341 (382)
..+..+...+.++++.+...|+..+..+.++||.. .....++..+.+.+. ..++.||..++..+..+...++
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 34445555555566666666666666666666543 123445555555554 2334466666666666555444
No 246
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.71 E-value=3 Score=37.28 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=144.0
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-HHHHHhhhHhhh--hhcCC-CchHHHHHHHHHHHhhcccc-ChHhH
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-ELAIQHILPCVK--ELSSD-SSQHVRSALASVIMGMAPLL-GKDAT 150 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~il~~l~--~~~~d-~~~~vr~~a~~~l~~l~~~~-~~~~~ 150 (382)
..+.+..++-+++.+||.++.+.+..++..... ..+.+.=++.+. .+-.| ++..=|..|.+.+..+...- |.+..
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 344444333333477888887777666442211 111111122221 22233 23345677777777666542 22333
Q ss_pred HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH-hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---
Q 016814 151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--- 226 (382)
Q Consensus 151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~-~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--- 226 (382)
...++..+....+++++..|..++..+.+++-. .++-+ .-.-+..+.+.+.|....+-..++..+-.+...-...
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh
Confidence 456666666777777777888887777776532 12211 1112333444444443334344444443333221111
Q ss_pred ---hhHHHHHHHHHHH----hccchh-HHHHHHHHHHHHHHHHhCh------HHHHhhhHHHHHhhhcCcchHHHHHHHH
Q 016814 227 ---FFDDKLGALCMQW----LQDKVY-SIRDAAANNLKRLAEEFGP------EWAMQHITPQVLEMINNPHYLYRMTILR 292 (382)
Q Consensus 227 ---~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~l~~~~~~~r~~a~~ 292 (382)
.-.+.++..+... .++... +.-+++..++..+.+.+.+ +.+ .-+..++..+.-++..+|...+.
T Consensus 185 ~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 185 RPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred cCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHH
Confidence 1112333333332 222221 4556677788888776643 111 35666777888889899999999
Q ss_pred HHHHhccccChhhhhh------hhHHHHH---hhcc----CCC---c---cHHHHHHH-HHHHHhhhhhHHHHHHhHHHH
Q 016814 293 AISLLAPVMGSEITCS------RLLPVVI---NASK----DRV---P---NIKFNVAK-VLQSLIPIVDQSMVEKTIRPC 352 (382)
Q Consensus 293 ~l~~l~~~~~~~~~~~------~~l~~l~---~~l~----d~~---~---~vR~~a~~-~l~~i~~~~~~~~~~~~i~~~ 352 (382)
.+-.+...-.+++... ...+.-. ..++ +.. + .-|..-.. -++.+.. -.+...+++.
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~----ili~~gL~~~ 338 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLA----ILIEAGLLEA 338 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHH----HHHHcChHHH
Confidence 8888754332221110 0001000 0000 000 0 00111111 0111110 1234678888
Q ss_pred HHHhcCCC-CccHHhHHHHHHHHHHHHh
Q 016814 353 LVELTEDP-DVDVRFFATQAIQSIDHVM 379 (382)
Q Consensus 353 l~~l~~d~-~~~vr~~a~~al~~~~~~~ 379 (382)
|.++..+. +..++..|.--++.+....
T Consensus 339 L~~li~~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 339 LVELIESSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 98987775 8888888888887765543
No 247
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.55 E-value=0.077 Score=30.11 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=23.1
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFC 103 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~ 103 (382)
..+|.+++++.++++.|++.|+.+|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46888888888888888888888888765
No 248
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=94.54 E-value=2.5 Score=40.05 Aligned_cols=319 Identities=16% Similarity=0.114 Sum_probs=160.5
Q ss_pred cCCchHHHHHHHHHHHHHHhccCh-----------hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc-
Q 016814 7 SNDQDSVRLLAVEGCAALGKLLEP-----------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM- 74 (382)
Q Consensus 7 ~d~~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~- 74 (382)
+.+....|..-..++..++-.+-| ..+.+.+..++....++.+..+|..+++.+++++..++-....+
T Consensus 206 g~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sf 285 (993)
T COG5234 206 GQENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESF 285 (993)
T ss_pred cccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHH
Confidence 455667777766666666655433 12344466667777788899999999999999999887543221
Q ss_pred -c---------hHHHHHHhcC--CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcC--------CCchHHHHHH
Q 016814 75 -D---------LVPAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS--------DSSQHVRSAL 134 (382)
Q Consensus 75 -~---------ll~~l~~~l~--d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~--------d~~~~vr~~a 134 (382)
+ .+..+.+-++ +.++-+-..++-.++ ++...+-+.....+.|.+.+.+. -+...+|.++
T Consensus 286 i~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss 364 (993)
T COG5234 286 IDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSS 364 (993)
T ss_pred HHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhhhhhheccccceeehheeeeccceeeccc
Confidence 1 2222222221 234445555544444 44444433222224444444332 1233678888
Q ss_pred HHHHHhhccccChHh---HHHhhHHHHHH-hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHH
Q 016814 135 ASVIMGMAPLLGKDA---TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 210 (382)
Q Consensus 135 ~~~l~~l~~~~~~~~---~~~~l~~~l~~-~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~ 210 (382)
+-.+-.+.....+.. ....++-.+.+ .+=|++-.+|.++..++-++.....+...-+.++..+ ||.--.
T Consensus 365 ~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslI-------N~~sv~ 437 (993)
T COG5234 365 CFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLISLI-------NYVSVT 437 (993)
T ss_pred ceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhhhc-------cceecc
Confidence 777666655422111 12233333333 6778899999988877765543211122223344433 232111
Q ss_pred HHHHHhHHHHhhhchhh-h---HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc---c
Q 016814 211 AIIEYIPLLASQLGVGF-F---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP---H 283 (382)
Q Consensus 211 ~~~~~l~~l~~~~~~~~-~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~---~ 283 (382)
..-++-+.+...+.+.. + .+.+-..+.+.+.+-+.+++.....++..+++. +.+ ....+|.+...+.++ +
T Consensus 438 r~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~-~~~--~p~yl~~Il~k~~sdfi~~ 514 (993)
T COG5234 438 RISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKY-PKE--LPIYLPPILDKLSSDFIFG 514 (993)
T ss_pred hhhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccchhhhhhccccHHHHhcC-ccc--CchhhhHHhhhCchhhhcc
Confidence 13333333333332111 0 112223345555566778888888888888652 222 122444444433322 1
Q ss_pred hHHHHHHHHHHHHhccccChh------------hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814 284 YLYRMTILRAISLLAPVMGSE------------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 284 ~~~r~~a~~~l~~l~~~~~~~------------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 339 (382)
+.+ ....++.+..-++.+ ...-.+.|.+-+...|..+-.|.-+..+++.+...
T Consensus 515 ~~i---l~~~~k~F~~~~~~~rihei~~~i~q~kIkl~i~~~~~r~f~d~~~~f~~F~~~~~~vi~g~ 579 (993)
T COG5234 515 YTI---LASIIKGFLFPFDINRIHEILSHIQQTKIKLGILKGIQRIFADDIRVFRAFFSEAFSVIIGA 579 (993)
T ss_pred hhh---HHHHHHHhcCccCCccHHHHHHHHHHhheeecCChHHHHHhcccchHHHHHHHHHHHHHhhh
Confidence 222 112222221111110 11123445556667777777777777777766543
No 249
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.53 E-value=1.7 Score=33.76 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH---HHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHhCh--
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGP-- 264 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~-- 264 (382)
+.+...+.++++++++.-|..++..+...++..|.+.+. ..++..+...++.+ ...+++.++.++..+....++
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 666777888889999999999999999998887777663 35666677777654 467899999999999887654
Q ss_pred HHHH-------hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh
Q 016814 265 EWAM-------QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 303 (382)
Q Consensus 265 ~~~~-------~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~ 303 (382)
+..+ ..+++.+++.+.+ ......++.++..+...++.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 2122 2344445555554 45556777777777665543
No 250
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=94.50 E-value=2 Score=34.44 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=20.8
Q ss_pred hhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814 308 SRLLPVVINASKDRVPNIKFNVAKVLQSL 336 (382)
Q Consensus 308 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~i 336 (382)
..+-..+.+.++|. +++|...+++|..+
T Consensus 170 ~~~a~~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 170 PSFAKLLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 55666677777774 78998888888765
No 251
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.49 E-value=0.73 Score=34.37 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=46.6
Q ss_pred hhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH---H-HHhHHHHHHHhcCC---CCccHHhHHHHHHHHHHHHhcc
Q 016814 309 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM---V-EKTIRPCLVELTED---PDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 309 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~---~-~~~i~~~l~~l~~d---~~~~vr~~a~~al~~~~~~~~~ 381 (382)
..+..+.+.++++++++...|+..|..+....|... + ...++..+.++... .+.+||..+...+..++..++.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 445556666677777777777777777777766532 1 22445556665543 4666777777777777776654
No 252
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=4.4 Score=38.29 Aligned_cols=284 Identities=12% Similarity=0.016 Sum_probs=133.8
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhH
Q 016814 38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 117 (382)
Q Consensus 38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~ 117 (382)
+..+.+++...+..++..+.-.++.......++. .-.+-.+...+.+++..+|.+++-.|+-.-..-..+.+ +.
T Consensus 417 L~qldkylys~~~~ikaGaLLgigi~~~gv~ne~--dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V----~~ 490 (878)
T KOG2005|consen 417 LEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC--DPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEV----LE 490 (878)
T ss_pred HHHHHHHhhcCCchhhhccceeeeeecccccccc--CHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHH----HH
Confidence 3444455555555666666666664443332322 33566677788888889999988888765333334433 33
Q ss_pred hhhhhcCCCchH--HHHHHHHHHHhhcc-ccChHhHHHhhHHHHHHhhc--CCChHHHHHHHHhhHHhhhhhchhhHhhh
Q 016814 118 CVKELSSDSSQH--VRSALASVIMGMAP-LLGKDATIEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQS 192 (382)
Q Consensus 118 ~l~~~~~d~~~~--vr~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ 192 (382)
.+...+.|.+.. |...+.-+++.+.- ..+.+ .-..++.-+.+--+ -++.-.|- ..-.++ .-++|.....+.
T Consensus 491 lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~d-vts~ilqtlmekse~El~d~~~RF-L~LGL~--llflgkqe~~d~ 566 (878)
T KOG2005|consen 491 LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNED-VTSSILQTLMEKSETELEDQWFRF-LALGLA--LLFLGKQESVDA 566 (878)
T ss_pred HHhHHhcCCCCchhHHHHHHhhcceeEEecCChH-HHHHHHHHHHHhhhhhhhchHHHH-HHHHHH--HHHhcccchHHH
Confidence 455556555554 55555555554432 22222 22222222222111 01111221 111111 122333322222
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH--HHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHhChHHHHh
Q 016814 193 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQ 269 (382)
Q Consensus 193 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~ 269 (382)
+...+..+ +...|.. ...+-..+...|..... +. ..+.....+.... -.++-...++.-.-.+|.+.-.+
T Consensus 567 ~~e~~~~i----~~~~~~~-~~~lv~~caYaGTGnvl~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~e 639 (878)
T KOG2005|consen 567 VVETIKAI----EGPIRKH-ESILVKSCAYAGTGNVLKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSE 639 (878)
T ss_pred HHHHHHHh----hhHHHHH-HHHHHHHhhccccCceEEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhH
Confidence 22222211 1111111 11111222222221110 00 1111222221110 00111222222222244444344
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
..+..+-..+.-.++.+|.+.=-+++-++..-+ .-.++..+-++.+|...++-.+++-++|.+...-.+
T Consensus 640 M~lR~f~h~l~yge~~iRravPLal~llsvSNP----q~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnN 708 (878)
T KOG2005|consen 640 MVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP----QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNN 708 (878)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC----cchHHHHHHHhccCcchHHHHHHHHHhccccCCcch
Confidence 455566666666778888888888877763222 236778888999999999999999999988764443
No 253
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=94.47 E-value=2.6 Score=35.54 Aligned_cols=140 Identities=15% Similarity=0.120 Sum_probs=81.8
Q ss_pred HHHHHHHHhccch----hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHH-HHHHHHHhccccChhhh
Q 016814 232 LGALCMQWLQDKV----YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMT-ILRAISLLAPVMGSEIT 306 (382)
Q Consensus 232 l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~-a~~~l~~l~~~~~~~~~ 306 (382)
.+|.+...+.+++ ...-...+..++.+++..|.+.... ++..+....++.+.. ....+..+.+.+.++ +
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~-----il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-~ 185 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLAR-----ILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-H 185 (262)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-h
Confidence 4566666666555 1333455688888887655443322 222222222222222 223333344445443 4
Q ss_pred hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH-HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 307 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 307 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
...++-.++.++..+.+.+|..+++.|..+.+..+.+ .....++..+.+++..+-+ ..|.+.+..+...-|
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcc
Confidence 4567778889998888999999999999999876532 1334566667777765444 356666666665544
No 254
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=5.3 Score=39.06 Aligned_cols=327 Identities=11% Similarity=0.054 Sum_probs=168.9
Q ss_pred hHHHHH-HHHHHHHHHhccChhhhhhhhhhhhhhhc-----cCCCHHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHh
Q 016814 11 DSVRLL-AVEGCAALGKLLEPQDCVAHILPVIVNFS-----QDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRL 83 (382)
Q Consensus 11 ~~vR~~-a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-----~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~ll~~l~~~ 83 (382)
..-|.. .+-.+..++.+.+..+ +.-+|.+.+.+ +-.++..-..+...+|.++..+++... .+..+|.+++.
T Consensus 480 s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~ 557 (982)
T KOG2022|consen 480 SLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQG 557 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHH
Confidence 334444 5566777888776532 22345544433 234788889999999999999988654 35689999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCC--CchHHHHHHHHHHHhhccccChHhHHHhhHHHHH
Q 016814 84 LRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSD--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL 159 (382)
Q Consensus 84 l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 159 (382)
+..++..+ .+...+.++++.+..+ .+...++....+.+.. ..+.+|....+++|.+.+...++...+++..++.
T Consensus 558 Lh~sk~s~--q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 558 LHNSKESE--QAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred hcCchHHH--HHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 87544433 3556688898887654 3344555555555433 3457889999999999888776554444443333
Q ss_pred Hhh-------cC--CChHHHHHHHH---hhHHhhhhhc-h---------------------hhHhhhHHHHHHHHhc--C
Q 016814 160 SLL-------KD--EFPDVRLNIIS---KLDQVNQVIG-I---------------------DLLSQSLLPAIVELAE--D 203 (382)
Q Consensus 160 ~~l-------~d--~~~~vr~~~~~---~l~~~~~~~~-~---------------------~~~~~~llp~l~~~~~--d 203 (382)
.++ .. +.++-+...+- .+..+...+. + -.+...++|.+.+.+. -
T Consensus 636 ~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~ 715 (982)
T KOG2022|consen 636 PILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWL 715 (982)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 222 11 12222222221 2222322211 0 0122455666655542 1
Q ss_pred CCchHHHHHHHHhHHHHhhhchh---hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH--hCh---HHHHhhhHHHH
Q 016814 204 RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE--FGP---EWAMQHITPQV 275 (382)
Q Consensus 204 ~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~--~~~---~~~~~~l~~~l 275 (382)
.+..+-..++..+..=....++. ...+.+.+.+......+....-.-...++...... +++ ..+. ..+...
T Consensus 716 ~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~-~~~q~s 794 (982)
T KOG2022|consen 716 GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMA-NAFQQS 794 (982)
T ss_pred cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhccccccccHHHHHH-HHHHHH
Confidence 12223233332222212222333 22345555555533332211111111111111100 111 0011 111122
Q ss_pred Hhhhc----CcchHHHHHHHHHHHHhccccCh------hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814 276 LEMIN----NPHYLYRMTILRAISLLAPVMGS------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 276 ~~~l~----~~~~~~r~~a~~~l~~l~~~~~~------~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
+..+. .+++.+-.....++.++.+..+. ..+..-++|..+..++.+.+-.-.++++.+..+...-++
T Consensus 795 l~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 795 LLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred HHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 22222 23455666666677666554331 135566777888899998888777888888887765443
No 255
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=94.42 E-value=10 Score=42.18 Aligned_cols=177 Identities=20% Similarity=0.247 Sum_probs=101.1
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccCh--------hhhhhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEP--------QDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTR 73 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~--------~~~~~~ll~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 73 (382)
+..+..+++.+|..++..+..+.+.... -.....++..+..+ ..|.++.+|......+. +.+......
T Consensus 487 ~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ 563 (2341)
T KOG0891|consen 487 DSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQ 563 (2341)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcC
Confidence 3456778899999998888877775533 12244444444443 36888888888777766 112111222
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHH-----hhC------------------------------------HH---
Q 016814 74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR-----ILN------------------------------------PE--- 109 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~-----~~~------------------------------------~~--- 109 (382)
...+-..+..+.|..-.++.++...++.++. .++ +.
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~ 643 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLIS 643 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence 3344444555555555555555555553332 100 00
Q ss_pred HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhhcCC-ChHHHHHHHHhhHHhhh
Q 016814 110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQ 182 (382)
Q Consensus 110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~-~~~vr~~~~~~l~~~~~ 182 (382)
.+...++-.+...+.|.+..+-.++..+++.++...|.+. ..+.+++.+.+.+.|. +..-|.++.+.++.+.+
T Consensus 644 ~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 644 PYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred hhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 1112233333445678888889999999999998877332 2245666666666553 34555566666666543
No 256
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.32 E-value=0.56 Score=33.79 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=48.2
Q ss_pred HHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhChHH-H--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhc
Q 016814 231 KLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEW-A--MQHITPQVLEMINNPHYLYRMTILRAISLLA 298 (382)
Q Consensus 231 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~-~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 298 (382)
+++..+..++ .+.++.+...|+.-+|.+++.++... + .-..-..+++++.+++..+|..|+.+++.+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4666677777 44577788889999999998874321 1 1234567788889999999999999988764
No 257
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.23 E-value=1.7 Score=32.55 Aligned_cols=97 Identities=11% Similarity=0.166 Sum_probs=69.1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH----HHHhhhHhhh
Q 016814 45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPCVK 120 (382)
Q Consensus 45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~l~ 120 (382)
..++||..=...|..+.. .+ ......+..+.+.+++.++.|...|+..|..+.+.+|... ....++..+.
T Consensus 14 l~~~dw~~ileicD~In~-----~~-~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 14 NREEDWEAIQAFCEQINK-----EP-EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred CCCCCHHHHHHHHHHHHc-----CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence 346677766666666542 11 1223567778888899999999999999999999998762 2345566666
Q ss_pred hhcCC------CchHHHHHHHHHHHhhccccCh
Q 016814 121 ELSSD------SSQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 121 ~~~~d------~~~~vr~~a~~~l~~l~~~~~~ 147 (382)
+++.. .+..|+..++..+..+...++.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 66643 5678999999999998876653
No 258
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=94.07 E-value=1.3 Score=32.99 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=67.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH----HHHhhhHhhh
Q 016814 45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPCVK 120 (382)
Q Consensus 45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~l~ 120 (382)
..++||..=...|..+.. + .......+..+.+-++++++.+...|+..+..+.+.+|... ....++..+.
T Consensus 13 l~~~dw~~~l~icD~i~~-----~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~ 86 (133)
T smart00288 13 LLEEDWELILEICDLINS-----T-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV 86 (133)
T ss_pred CCCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence 346666665555555431 1 22224577888888889999999999999999999988763 2345677777
Q ss_pred hhcCCCch--HHHHHHHHHHHhhccccCh
Q 016814 121 ELSSDSSQ--HVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 121 ~~~~d~~~--~vr~~a~~~l~~l~~~~~~ 147 (382)
.++.++.. .||..+...+..+...+..
T Consensus 87 ~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 87 KLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 77766443 3899999988888876653
No 259
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=6.1 Score=38.01 Aligned_cols=286 Identities=10% Similarity=0.093 Sum_probs=157.0
Q ss_pred cHHHHHHHHHHHHHHHHhhCHHH-HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcc-ccChHhHHHhhHHHHHH-----
Q 016814 88 EAEVRIAAAGKVTKFCRILNPEL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAP-LLGKDATIEQLLPIFLS----- 160 (382)
Q Consensus 88 ~~~VR~~a~~~l~~l~~~~~~~~-~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~----- 160 (382)
++.+-..++++++++...++-.. ..+.+++.+.+.+. ...+|.+|+.++-.+.. .+.+... -.++..+..
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dK-L~lln~L~q~l~lf 282 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDK-LALLNMLNQTLELF 282 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHH-HHHHHHHHHHHHHH
Confidence 78888889999999988877663 34567888888776 67899999999887763 3333221 122333321
Q ss_pred --hhcC--CChHHHHHHHHhhHHhh-------hhh----ch---h---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHH
Q 016814 161 --LLKD--EFPDVRLNIISKLDQVN-------QVI----GI---D---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 219 (382)
Q Consensus 161 --~l~d--~~~~vr~~~~~~l~~~~-------~~~----~~---~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l 219 (382)
...| .++++-....+-+...+ +.+ .+ + .....++|.+.+.+.++...+-..+...+...
T Consensus 283 g~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdy 362 (980)
T KOG2021|consen 283 GYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDY 362 (980)
T ss_pred hhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 1222 34444443333332221 111 00 0 11124677788888877776666666655544
Q ss_pred Hhhhch------h---hhHHHHHHHHHHHhcc------ch----------hHHHHHHHHHHHHHHHHhChHHHHhhhHHH
Q 016814 220 ASQLGV------G---FFDDKLGALCMQWLQD------KV----------YSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274 (382)
Q Consensus 220 ~~~~~~------~---~~~~~l~~~l~~~l~d------~~----------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 274 (382)
...+.. . .....+...+.++.-| .+ .++|+..-.....+. ...++.+...+-..
T Consensus 363 l~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~s 441 (980)
T KOG2021|consen 363 LAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQS 441 (980)
T ss_pred HHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 333221 1 1112222333333211 11 246665443333333 34555444434333
Q ss_pred HHhhh---cCcchHHHHHHHHHHHHhccccChhh------------hhhhhHHHHH--hhccCCCccHHHHHHHHHHHHh
Q 016814 275 VLEMI---NNPHYLYRMTILRAISLLAPVMGSEI------------TCSRLLPVVI--NASKDRVPNIKFNVAKVLQSLI 337 (382)
Q Consensus 275 l~~~l---~~~~~~~r~~a~~~l~~l~~~~~~~~------------~~~~~l~~l~--~~l~d~~~~vR~~a~~~l~~i~ 337 (382)
+...+ ...+|..-+.|++.+=.+++.+..+. ....+++.+. +.+..+++.|..--.+.+..-.
T Consensus 442 lS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~ 521 (980)
T KOG2021|consen 442 LSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYN 521 (980)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHH
Confidence 43333 34579999999999988887665431 1223333333 2455666667666666665533
Q ss_pred hhhhHHHHHHhHHHHHHHhc------CCCCccHHhHHHHHHHHHHHHhc
Q 016814 338 PIVDQSMVEKTIRPCLVELT------EDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 338 ~~~~~~~~~~~i~~~l~~l~------~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
.-+. ..++-.|.+.... +..+..||..|...+.++.+.+.
T Consensus 522 kff~---~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk 567 (980)
T KOG2021|consen 522 KFFS---TESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK 567 (980)
T ss_pred HHHh---cchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH
Confidence 3232 2244566666643 34678899999999988887654
No 260
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.99 E-value=2.6 Score=33.62 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=57.2
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh--hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc
Q 016814 74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 145 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~--~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 145 (382)
+..++.+.+++-+++..||..|++.+..+.+. ..|. ..+|.+..+..|+++.+|..|...+..+.+..
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK----QCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 44678888888999999999999999998774 2343 57899999999999999999999988887543
No 261
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.89 E-value=0.88 Score=35.04 Aligned_cols=131 Identities=16% Similarity=0.174 Sum_probs=78.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc---Chh-hhhhhhHHHHHhh
Q 016814 242 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSE-ITCSRLLPVVINA 317 (382)
Q Consensus 242 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~-~~~~~~l~~l~~~ 317 (382)
....++|..+.-.+.++.+.. ++.+.+.+-..+...+.+....-...+..++..+-+.. +.+ ...+.+++.+...
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 356778888888888886433 33455556666666665555555556666666654332 222 2245666777766
Q ss_pred cc--CCCccHHHHHHHHHHHHhhhhhH-HHHHHhHHHHHHHhcC-CCCcc-HHhHHHHHHH
Q 016814 318 SK--DRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTE-DPDVD-VRFFATQAIQ 373 (382)
Q Consensus 318 l~--d~~~~vR~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~-d~~~~-vr~~a~~al~ 373 (382)
.. .++..+...+++.+..-+..-.. ..+.....+.|.+..+ +++.. +|..|+-++.
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 66 55667888888877654432222 2456788888888774 45454 6776665553
No 262
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=93.86 E-value=0.59 Score=33.97 Aligned_cols=69 Identities=10% Similarity=0.199 Sum_probs=46.3
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 016814 39 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 109 (382)
Q Consensus 39 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 109 (382)
+++.+...|.++-.--....-|.++... ......+++..+.+-+++.++.|+..++..|..++...+++
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~--s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYEEIAKLTRK--SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHc--CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence 4455566655554444444444444433 11223578999999999999999999999999998876644
No 263
>PF05536 Neurochondrin: Neurochondrin
Probab=93.79 E-value=6.2 Score=37.39 Aligned_cols=175 Identities=21% Similarity=0.256 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCch-HHHHHHHHHHHhhcccc-ChHhH-HHhhHHHHHHh
Q 016814 89 AEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLL-GKDAT-IEQLLPIFLSL 161 (382)
Q Consensus 89 ~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~-~~~~~-~~~l~~~l~~~ 161 (382)
...+.-|+..|..|+. .++ .-.-.-+|.+.+.+...+. .+-.-+..+|..++..- |.+.. ...-++.+.+.
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence 4567777777777765 222 1122457999998877666 88888888888887432 33322 24566777777
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchhhH------hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--------hhh
Q 016814 162 LKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--------VGF 227 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~------~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------~~~ 227 (382)
+.+ .+.....++..+..+....+.+.+ ...+++.+...........+..++..++.+....+ ...
T Consensus 149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 149 IPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred HHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 666 666677777777776665553322 23566667666666666777888888888776553 122
Q ss_pred hHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHH
Q 016814 228 FDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEW 266 (382)
Q Consensus 228 ~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~ 266 (382)
+.+.+...+...+++ ..++-|..++...+.+.+.+|.++
T Consensus 228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence 445667777777765 467889999999999999998765
No 264
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=93.72 E-value=3.5 Score=39.15 Aligned_cols=321 Identities=14% Similarity=0.040 Sum_probs=152.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCccc-------ccchHHHHHHhc----CCCcHHHHHHHHHHHHHHHHhhCHH---HH
Q 016814 46 QDKSWRVRYMVANQLYELCEAVGPEPT-------RMDLVPAYVRLL----RDNEAEVRIAAAGKVTKFCRILNPE---LA 111 (382)
Q Consensus 46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~-------~~~ll~~l~~~l----~d~~~~VR~~a~~~l~~l~~~~~~~---~~ 111 (382)
..+....|+..++++..++..+-+... ...++..+++.+ ++.+..+|-.+++.++++++.++.. .+
T Consensus 206 g~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sf 285 (993)
T COG5234 206 GQENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESF 285 (993)
T ss_pred cccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHH
Confidence 455667888899999888766544111 122455555544 5556789999999999999887643 22
Q ss_pred HH---h-----hhHhhhhhc--CCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC--------hHHHHHH
Q 016814 112 IQ---H-----ILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF--------PDVRLNI 173 (382)
Q Consensus 112 ~~---~-----il~~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--------~~vr~~~ 173 (382)
.+ . ++..+.+-+ -+.++.+-..++..++ ++...+-+...-.+.|++.+.++-+. ..+|..+
T Consensus 286 i~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss 364 (993)
T COG5234 286 IDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSS 364 (993)
T ss_pred HHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhhhhhheccccceeehheeeeccceeeccc
Confidence 21 1 222222222 2345544444444333 44433322222235566666654322 2455555
Q ss_pred HHhhHHhhhhhch---hhHhhhHHHHHHH-HhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHH
Q 016814 174 ISKLDQVNQVIGI---DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRD 249 (382)
Q Consensus 174 ~~~l~~~~~~~~~---~~~~~~llp~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 249 (382)
.-.+-.+....+. +.+...+...+.+ .+-|+.-.+|+++..++-+....-.+......++..+ ++ .| .++
T Consensus 365 ~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslI-N~-~s-v~r--- 438 (993)
T COG5234 365 CFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLISLI-NY-VS-VTR--- 438 (993)
T ss_pred ceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhhhc-cc-ee-cch---
Confidence 4444333332211 1121223333443 5678888999998888776654422222233333333 10 01 011
Q ss_pred HHHHHHHHHHHHhChH-H--HHhhhH-HHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccH
Q 016814 250 AAANNLKRLAEEFGPE-W--AMQHIT-PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI 325 (382)
Q Consensus 250 ~a~~~l~~~~~~~~~~-~--~~~~l~-~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~v 325 (382)
--++-+.+...+.++ . ..++++ +.+++.+.+-+..++.....++..+.+.-.. .+..+|.++..+.+....-
T Consensus 439 -~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~~~~---~p~yl~~Il~k~~sdfi~~ 514 (993)
T COG5234 439 -ISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKYPKE---LPIYLPPILDKLSSDFIFG 514 (993)
T ss_pred -hhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccchhhhhhccccHHHHhcCccc---CchhhhHHhhhCchhhhcc
Confidence 112222222222111 0 111222 2255555566667888888888888543211 2223333333333211110
Q ss_pred HHHHHHHHHHHhhhhhHH------------HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 326 KFNVAKVLQSLIPIVDQS------------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 326 R~~a~~~l~~i~~~~~~~------------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
-......++.+.-.++.+ .+.-.+.+.+.....|..+--|..+..++.++..
T Consensus 515 ~~il~~~~k~F~~~~~~~rihei~~~i~q~kIkl~i~~~~~r~f~d~~~~f~~F~~~~~~vi~g 578 (993)
T COG5234 515 YTILASIIKGFLFPFDINRIHEILSHIQQTKIKLGILKGIQRIFADDIRVFRAFFSEAFSVIIG 578 (993)
T ss_pred hhhHHHHHHHhcCccCCccHHHHHHHHHHhheeecCChHHHHHhcccchHHHHHHHHHHHHHhh
Confidence 000111112221111111 1122455666666677666667777777776643
No 265
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.72 E-value=3.8 Score=34.66 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhc
Q 016814 246 SIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAISLLA 298 (382)
Q Consensus 246 ~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~ 298 (382)
.+|.-|+..++-+++.++... ....+...+...+-|. .+.....|+.+++.+.
T Consensus 302 alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 302 ALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 578888888888887776543 2233333344333332 2445556666666554
No 266
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=93.70 E-value=0.73 Score=34.73 Aligned_cols=74 Identities=11% Similarity=0.164 Sum_probs=51.5
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhh----hhhhHHHHHhhccCCCc-c---HHHHHHHHHHHHhhhh
Q 016814 269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVP-N---IKFNVAKVLQSLIPIV 340 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d~~~-~---vR~~a~~~l~~i~~~~ 340 (382)
...+..+...+.++++.+...|+..+..+.+++|..+. ...++..+.+.+.++.. . ||..++..+..+...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 44666777778888888888888888888888876522 23466666665543322 2 7888888888888777
Q ss_pred hH
Q 016814 341 DQ 342 (382)
Q Consensus 341 ~~ 342 (382)
+.
T Consensus 121 ~~ 122 (140)
T PF00790_consen 121 KS 122 (140)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 267
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=93.61 E-value=4.9 Score=44.49 Aligned_cols=247 Identities=15% Similarity=0.173 Sum_probs=139.5
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCH------H--HHHHhhhHhhhh-hcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNP------E--LAIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 153 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~------~--~~~~~il~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 153 (382)
.+...+.++|..+..++..+...... - .....++..+.. ...|.++.+|......+. ..+.+....+.
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~ 565 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPD 565 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCch
Confidence 44556678888876555554433221 0 112223333333 346777777777766655 22333333345
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHH----hc----CCCchHHHHHHHHhHHHHhhh--
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL----AE----DRHWRVRLAIIEYIPLLASQL-- 223 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~----~~----d~~~~vr~~~~~~l~~l~~~~-- 223 (382)
.+......+.|+.-..+..+...++.++..-+ ..++|.+... .+ +...++.......+..+....
T Consensus 566 ~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 566 LLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 55556666777777778777777776654322 2344444332 11 111223333333333322211
Q ss_pred chhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccc
Q 016814 224 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPV 300 (382)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~ 300 (382)
....+...++-.+...+.|++..+-.++..+++.++...|. ..+.+..++.+.+.+.+.+ ..-|.++..+++.+...
T Consensus 641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 12222234455566678888889999999999999988773 2334467777777777654 66788889999998755
Q ss_pred cCh----hhhhhhhHHHHHhhccCC-CccHHHHHHHHHHHHh
Q 016814 301 MGS----EITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLI 337 (382)
Q Consensus 301 ~~~----~~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~i~ 337 (382)
-|. ..-.+.++..+...++.. ...+|..+++.++..+
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 442 122345555555544433 4558888888877443
No 268
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=8.4 Score=38.19 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---H--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh-
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---W--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS- 303 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~- 303 (382)
.+++.....++.+++..+|-.++..+..-...+... . ...+..|.+++.+.++++-+-..|+.++..++...|.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 456666778899999999999999987765544321 1 2345677788899999999999999999999987773
Q ss_pred --hhhhhhhHHHHHhhccCCC
Q 016814 304 --EITCSRLLPVVINASKDRV 322 (382)
Q Consensus 304 --~~~~~~~l~~l~~~l~d~~ 322 (382)
+-+.+.++|-+-.++.|..
T Consensus 882 v~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888877776644
No 269
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=11 Score=39.44 Aligned_cols=237 Identities=13% Similarity=0.149 Sum_probs=138.2
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchH----HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhh
Q 016814 42 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV----PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHI 115 (382)
Q Consensus 42 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll----~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~i 115 (382)
.+-+.-.|+..|.-|...+..+......+.... ++ -.+.++..|++.+||....+.+..+...+.+. .+...+
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~-il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKG-ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhh-hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 333445566888888888888887665554333 33 33456778999999999999999988877665 556677
Q ss_pred hHhhhhhcCCCchHHHHHHHHHHHhhcccc-ChHh---HHHhhHHHHHHhh--------cC-----------CChHHHHH
Q 016814 116 LPCVKELSSDSSQHVRSALASVIMGMAPLL-GKDA---TIEQLLPIFLSLL--------KD-----------EFPDVRLN 172 (382)
Q Consensus 116 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~~---~~~~l~~~l~~~l--------~d-----------~~~~vr~~ 172 (382)
+|.+.-...|....|-.+|...+......- .++. ..+.+.++..+.+ .| ....|-..
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~s 205 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISS 205 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHH
Confidence 888877778888888777777666543311 0111 1244555555442 11 11123333
Q ss_pred HHHhhHHhhhhhchhhHhh-------hH--HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh---hHHHHHHHHHHHh
Q 016814 173 IISKLDQVNQVIGIDLLSQ-------SL--LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWL 240 (382)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~-------~l--lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l 240 (382)
++..+..+....|.+.-.. .+ -..+..+++++++.+|.+..+.+..+.+.+.... -..++.|.+....
T Consensus 206 sLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~ 285 (1312)
T KOG0803|consen 206 SLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSI 285 (1312)
T ss_pred HHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccc
Confidence 4444444443333321111 11 2335566789999999999999888877654431 1245666666666
Q ss_pred ccchhHHHHHHHHHHHHHHHHhChHH------HHhhhHHHHHhhhc
Q 016814 241 QDKVYSIRDAAANNLKRLAEEFGPEW------AMQHITPQVLEMIN 280 (382)
Q Consensus 241 ~d~~~~vr~~a~~~l~~~~~~~~~~~------~~~~l~~~l~~~l~ 280 (382)
.+.+ -|-......+-...+.+..++ ....++|.+.+.+.
T Consensus 286 ~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 286 DSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred cccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 5555 333333333333334444333 23456666666555
No 270
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=9.3 Score=38.57 Aligned_cols=148 Identities=14% Similarity=0.182 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhccCh----hhhhhh---hhhhhhhhc-cCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcC
Q 016814 16 LAVEGCAALGKLLEP----QDCVAH---ILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR 85 (382)
Q Consensus 16 ~a~~~l~~l~~~~~~----~~~~~~---ll~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~ 85 (382)
.++.++..+.+..+. -..+.. ..+++..++ ...++.+.+.+.+.+..+...-+- +......+..++.++.
T Consensus 1744 m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1744 MTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred HHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHh
Confidence 466677776665542 011222 334444444 466778999999888766543221 1222346777777776
Q ss_pred CCcHHHHHHHHHHHHHHHHh--hCHHHHHH-hhhHhhhhhcCCCchHHHHHHHHHHHhhc--cccChHhH---HHhhHHH
Q 016814 86 DNEAEVRIAAAGKVTKFCRI--LNPELAIQ-HILPCVKELSSDSSQHVRSALASVIMGMA--PLLGKDAT---IEQLLPI 157 (382)
Q Consensus 86 d~~~~VR~~a~~~l~~l~~~--~~~~~~~~-~il~~l~~~~~d~~~~vr~~a~~~l~~l~--~~~~~~~~---~~~l~~~ 157 (382)
+ -|..|+.++..|..+... +..+...+ .++..+.-++...++.+|..+++.++.+. +..|+... ...+-..
T Consensus 1824 S-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~ 1902 (2235)
T KOG1789|consen 1824 S-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEI 1902 (2235)
T ss_pred c-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHH
Confidence 4 588899999999888653 23333322 23333444667788999999999999885 34455432 2233344
Q ss_pred HHHhhcC
Q 016814 158 FLSLLKD 164 (382)
Q Consensus 158 l~~~l~d 164 (382)
+...+.|
T Consensus 1903 f~d~~RD 1909 (2235)
T KOG1789|consen 1903 FADSLRD 1909 (2235)
T ss_pred HHHHHhc
Confidence 4555555
No 271
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.50 E-value=0.15 Score=28.92 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=19.9
Q ss_pred HhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 347 KTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 347 ~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
...+|.|.+++++++.+|+..|+.|++.++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456666666666667777777777666654
No 272
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.46 E-value=5.3 Score=35.55 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=49.5
Q ss_pred hhHHHHHhhccCCC-ccHHHHHHHHHHHHhhhhhHH--HHH-HhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 309 RLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQS--MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 309 ~~l~~l~~~l~d~~-~~vR~~a~~~l~~i~~~~~~~--~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
+++..++.++...+ |.+=..|+.=++....+++.. ... -.....+-.+++.+|++||.+|..|++.+..
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 56667777776655 667777888888888776532 111 2344556678899999999999999988754
No 273
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.40 E-value=0.27 Score=35.35 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=36.3
Q ss_pred hhHhhhhhc-CCCchHHHHHHHHHHHhhccccChHh--H-HHhhHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 016814 115 ILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA--T-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 181 (382)
Q Consensus 115 il~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~--~-~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~ 181 (382)
++..|.+++ .+.++.+-..||.=++.++...+... . .-.....+.+++++++++||..|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 334444444 23345555566666666665554221 1 1234466667777777777777777776654
No 274
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=93.39 E-value=0.13 Score=29.39 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=28.7
Q ss_pred HHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHH
Q 016814 21 CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60 (382)
Q Consensus 21 l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l 60 (382)
++.++..-+.-...+.+...+.+.+.|+++.||+++++.+
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4455554433333457888889999999999999998753
No 275
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=93.34 E-value=7.3 Score=36.78 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=50.4
Q ss_pred hhhchhhhHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHh----hhcCcchHHHHHHHHHHH
Q 016814 221 SQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE----MINNPHYLYRMTILRAIS 295 (382)
Q Consensus 221 ~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~----~l~~~~~~~r~~a~~~l~ 295 (382)
+.+.++.+. +++-.+...+ ..+...+|-+.++.++.+.+..-++...+.+.|.+.. ++.|++|.+++.|+++++
T Consensus 470 ~~l~~~~i~-qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~ 548 (559)
T PF14868_consen 470 QLLDPQLIE-QVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFG 548 (559)
T ss_pred HhcChHHHH-HHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 333444433 3333444444 3455557888888888777766555444455555443 456888888888888888
Q ss_pred HhccccCh
Q 016814 296 LLAPVMGS 303 (382)
Q Consensus 296 ~l~~~~~~ 303 (382)
.+++..+.
T Consensus 549 ~FAe~T~~ 556 (559)
T PF14868_consen 549 QFAERTSH 556 (559)
T ss_pred HHhccCCc
Confidence 88766553
No 276
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.31 E-value=5.2 Score=35.00 Aligned_cols=136 Identities=13% Similarity=0.125 Sum_probs=83.4
Q ss_pred hHHHHHHHHhHHHHhhhc-hhhhHHHHHHHHHH-Hhc---cchhHHHHH-HHHHHHHHHHHhChH------HHHhhhHHH
Q 016814 207 RVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQ-WLQ---DKVYSIRDA-AANNLKRLAEEFGPE------WAMQHITPQ 274 (382)
Q Consensus 207 ~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l~---d~~~~vr~~-a~~~l~~~~~~~~~~------~~~~~l~~~ 274 (382)
.+|+.+++.+........ .+...+.++|.+.. .+. +..+..|.. .+..++.++..++.. ...+.++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 356777777777766554 23333344444333 222 233444443 245555555555541 233444444
Q ss_pred HHhhhcC---cchHHHHHHHHHHHHhccccChh------hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814 275 VLEMINN---PHYLYRMTILRAISLLAPVMGSE------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 275 l~~~l~~---~~~~~r~~a~~~l~~l~~~~~~~------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
..+++.+ ..+..|......+..+.+.+-.. .....++..+.-++++++.++...+++++..+...+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555543 34789999999998888765322 24567778888889999999999999999999887765
No 277
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.29 E-value=1.1 Score=33.34 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=51.5
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccCCCc--cHHHHHHHHHHHHhhhhh
Q 016814 269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~i~~~~~ 341 (382)
...+..+...+.++++.+...|+..+..+.++||..+ ....++..+.+.+.++.. .||..++..+..+...+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 3456667777778888888888888888888887652 234566666666665433 288888888888887765
No 278
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=93.27 E-value=1.6 Score=32.86 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=55.2
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHhhhhhcCCCc--hH--HHHHHHHHHHhhcccc
Q 016814 74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCVKELSSDSS--QH--VRSALASVIMGMAPLL 145 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~l~~~~~d~~--~~--vr~~a~~~l~~l~~~~ 145 (382)
.+.+..+.+.+.+.++.+...|+..+..+.+.+|..... ..++..+..++.++. +. ||..+...+..+...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 457888888888899999999999999999988766332 246666666554322 22 8999999888888777
Q ss_pred Ch
Q 016814 146 GK 147 (382)
Q Consensus 146 ~~ 147 (382)
+.
T Consensus 121 ~~ 122 (140)
T PF00790_consen 121 KS 122 (140)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 279
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.24 E-value=5.3 Score=34.94 Aligned_cols=135 Identities=16% Similarity=0.277 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHhhC-HHHHHHhhhHhhhh-hcCC--------CchHHHHHHHHHHHhhccccChH--hHHHhhHHH
Q 016814 90 EVRIAAAGKVTKFCRILN-PELAIQHILPCVKE-LSSD--------SSQHVRSALASVIMGMAPLLGKD--ATIEQLLPI 157 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~-~~~~~~~il~~l~~-~~~d--------~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~ 157 (382)
.||+..++.+..+..... .+.+.+.++|.+.+ .+.| .+++|-......+..+.+.+.+. ...+.++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 466667777777766654 33445566666655 2222 34555555555555555544322 123555555
Q ss_pred HHHhhcC---CChHHHHHHHHhhHHhhhh-------hchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch
Q 016814 158 FLSLLKD---EFPDVRLNIISKLDQVNQV-------IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 225 (382)
Q Consensus 158 l~~~l~d---~~~~vr~~~~~~l~~~~~~-------~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 225 (382)
...++++ +.|+.|....+-+..+... ++++.+ ..++..+...+++++..+-..++..+..+...+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f-~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQF-KLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 5556654 3589999888888777654 244444 66777777778888888888888888888776644
No 280
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.21 E-value=1.9 Score=32.08 Aligned_cols=96 Identities=9% Similarity=0.167 Sum_probs=67.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhhhh
Q 016814 46 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCVKE 121 (382)
Q Consensus 46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~ 121 (382)
.++||..=...|..+..- +....+.+..+...+++.++.+...|+..+..+.+.+|...+ ...++..+..
T Consensus 14 ~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 14 EEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 456776666666665422 122245788888888889999999999999999999887522 1244455666
Q ss_pred hcCC---CchHHHHHHHHHHHhhccccCh
Q 016814 122 LSSD---SSQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 122 ~~~d---~~~~vr~~a~~~l~~l~~~~~~ 147 (382)
++.. .++.||..+...+..+...++.
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 6654 4678999999998888876664
No 281
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.09 E-value=0.34 Score=37.43 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=30.0
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814 86 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 144 (382)
Q Consensus 86 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 144 (382)
|..-++|++|.+++.++...+........++..+...+.| +..+|..+...+..++..
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~ 95 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQL 95 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHh
Confidence 3345566666666666655443332233445555555556 555666655555555443
No 282
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.98 E-value=1.5 Score=33.80 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=66.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---HhH-HHhhHHHHHHh
Q 016814 86 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DAT-IEQLLPIFLSL 161 (382)
Q Consensus 86 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~-~~~l~~~l~~~ 161 (382)
...+.+|..+.-++.++.+. .++.+.+.+-+.+...+.+....-...++.++..+-+..+. +.+ .+.+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~-~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDA-AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 34577888888888887532 23344455666666666665555566666666666554332 221 25666777777
Q ss_pred hc--CCChHHHHHHHHhhHHhhhhh-chhhHhhhHHHHHHHHhc
Q 016814 162 LK--DEFPDVRLNIISKLDQVNQVI-GIDLLSQSLLPAIVELAE 202 (382)
Q Consensus 162 l~--d~~~~vr~~~~~~l~~~~~~~-~~~~~~~~llp~l~~~~~ 202 (382)
+. .++..+...+++.+..-+..- -...+.++.++.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 66 556777777777665543211 112223556666777664
No 283
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.85 E-value=6.3 Score=34.66 Aligned_cols=181 Identities=11% Similarity=0.077 Sum_probs=112.7
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-chhh------h--H-HHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGF------F--D-DKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~------~--~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 260 (382)
..+++.+...+..=+++.|..+...+..+...- |... + . +.++..+.....+++-.. ..|.+..
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~mlR 148 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDMLR 148 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHHHH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHHHH
Confidence 567777777777778899999999888876542 2211 1 1 445666666655544321 2222222
Q ss_pred Hh-ChHHH-----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC---hh---hhhhhhHHHHHhhccCCCccHHHH
Q 016814 261 EF-GPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SE---ITCSRLLPVVINASKDRVPNIKFN 328 (382)
Q Consensus 261 ~~-~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~---~~~~~~l~~l~~~l~d~~~~vR~~ 328 (382)
.+ ..+.+ .+..+-.+.+....++..+-.-|...+..+..... .+ .-.+.++..+.+++.++|+-+|..
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 21 11221 12234446677788888887778877777654322 12 124566777888999999999999
Q ss_pred HHHHHHHHhhhhhHH-----H-HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 329 VAKVLQSLIPIVDQS-----M-VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 329 a~~~l~~i~~~~~~~-----~-~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
+++.|+.+...-.+- + -...-+..+-.++.|+...+|..|...+..++.
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 999999998543321 1 124566777778999999999999999988764
No 284
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=8.4 Score=36.58 Aligned_cols=275 Identities=13% Similarity=0.085 Sum_probs=136.2
Q ss_pred cCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC
Q 016814 7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 86 (382)
Q Consensus 7 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d 86 (382)
-.+++.++..|+-.++........+ -+-.+-++...++.++..+|..++-.|+..- .|... .+++..+...+.|
T Consensus 425 ys~~~~ikaGaLLgigi~~~gv~ne--~dpalALLsdyv~~~~s~~ri~aIlGLglay--aGsq~--e~V~~lL~Pi~~d 498 (878)
T KOG2005|consen 425 YSDESYIKAGALLGIGISNSGVFNE--CDPALALLSDYLQSSSSIHRIGAILGLGLAY--AGSQR--EEVLELLSPIMFD 498 (878)
T ss_pred hcCCchhhhccceeeeeeccccccc--cCHHHHHHHHhccCCCceeehHHhhhhHHhh--cCCch--HHHHHHHhHHhcC
Confidence 3344555555555555544433332 3456777888999999999999999988432 23221 2344455566666
Q ss_pred CcHH--HHHHHHHHHHHHH-HhhCHHHHHHhhhHhhhhhcC--CCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814 87 NEAE--VRIAAAGKVTKFC-RILNPELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 161 (382)
Q Consensus 87 ~~~~--VR~~a~~~l~~l~-~~~~~~~~~~~il~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 161 (382)
.+.. |..-+.-+++.+. -.+..+ +...++..+.+-.+ -.+...|=.+.. ++ .-.+|++...+.+...+..+
T Consensus 499 ~~~~~ev~~~aslsLG~IfvGscn~d-vts~ilqtlmekse~El~d~~~RFL~LG-L~--llflgkqe~~d~~~e~~~~i 574 (878)
T KOG2005|consen 499 TKSPMEVVAFASLSLGMIFVGSCNED-VTSSILQTLMEKSETELEDQWFRFLALG-LA--LLFLGKQESVDAVVETIKAI 574 (878)
T ss_pred CCCchhHHHHHHhhcceeEEecCChH-HHHHHHHHHHHhhhhhhhchHHHHHHHH-HH--HHHhcccchHHHHHHHHHHh
Confidence 6544 5555555555442 223333 33344444443221 122333322221 11 11234333223333222221
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHH-HHHHHHhcCCCchH-HHHHHHHhHHHHhhhchhhhHHHHHHHHHHH
Q 016814 162 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL-PAIVELAEDRHWRV-RLAIIEYIPLLASQLGVGFFDDKLGALCMQW 239 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ll-p~l~~~~~d~~~~v-r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 239 (382)
....|..+ ..+-..+.+.|.... -.+- ..+...+.++...- ...-...++.-.-..|.+.-.+..+..+..+
T Consensus 575 ----~~~~~~~~-~~lv~~caYaGTGnv-l~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~ 648 (878)
T KOG2005|consen 575 ----EGPIRKHE-SILVKSCAYAGTGNV-LKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHL 648 (878)
T ss_pred ----hhHHHHHH-HHHHHHhhccccCce-EEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 22223222 222233444443222 0110 22233333332210 1111222332222345555455667777778
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 301 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 301 (382)
+.-.++.+|.+.=-+++-+.-.-+ .-.++..+..+..|.+..+-.+++.+++-++-..
T Consensus 649 l~yge~~iRravPLal~llsvSNP----q~~vlDtLsk~shd~D~eva~naIfamGLiGAGT 706 (878)
T KOG2005|consen 649 LHYGEPHIRRAVPLALGLLSVSNP----QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGT 706 (878)
T ss_pred HHcCCHHHHHHHHHHHhhhccCCC----cchHHHHHHHhccCcchHHHHHHHHHhccccCCc
Confidence 887888888888777777653221 1237777778778888888888888877765433
No 285
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=92.70 E-value=2.6 Score=29.96 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=45.7
Q ss_pred CCchHHHHHHHHhHHHHhhhch--hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH
Q 016814 204 RHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 267 (382)
Q Consensus 204 ~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 267 (382)
.....|..+++.++.+.+..|+ ..+.++++-.+...+..+ +.|..+++++..+++.++.+.+
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence 4556788888999988883333 223466777777666654 8999999999999999887543
No 286
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=92.54 E-value=4.6 Score=32.37 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=49.9
Q ss_pred HhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 117 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
+.+.+...|++..+|+.+...+...... +...+.+++.+...+.|++..|+.++..+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 6778888888888888887776665433 223567888888888888899999999988888766
No 287
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=91.96 E-value=0.54 Score=36.35 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=50.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 016814 46 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 109 (382)
Q Consensus 46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 109 (382)
-|..-.+|++|.+++..+.+.+........+++.+...+.| +..||.-+...+.+++...+..
T Consensus 37 vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~ 99 (169)
T PF08623_consen 37 VDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE 99 (169)
T ss_dssp EEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH
Confidence 46677999999999999998776665556788889999999 8999999999999997765444
No 288
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=91.92 E-value=11 Score=35.54 Aligned_cols=158 Identities=10% Similarity=0.097 Sum_probs=94.5
Q ss_pred cccccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhh---hc-----CCCchHHHHHHHHHHH
Q 016814 70 EPTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILPCVKE---LS-----SDSSQHVRSALASVIM 139 (382)
Q Consensus 70 ~~~~~~ll~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~---~~-----~d~~~~vr~~a~~~l~ 139 (382)
.......+..+-..+.+.+ |+--...++++|++...++.+....-++..++. ++ +|...-|-+.....+|
T Consensus 476 ~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG 555 (1053)
T COG5101 476 DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG 555 (1053)
T ss_pred hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec
Confidence 3334456777777777775 566778889999998877766333333333333 33 2322222222222222
Q ss_pred hhccccCh-HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch----------hhHhhhHHHHHHHHhcCCCchH
Q 016814 140 GMAPLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------DLLSQSLLPAIVELAEDRHWRV 208 (382)
Q Consensus 140 ~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~----------~~~~~~llp~l~~~~~d~~~~v 208 (382)
..-..+.. -.+...++.-+.+++.+..+.|+..++..+-++.+..+. +.+...++..+.....|=.+.-
T Consensus 556 QYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ 635 (1053)
T COG5101 556 QYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQ 635 (1053)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHH
Confidence 22111111 113355666666777788899999999999888765432 3445566666666667777777
Q ss_pred HHHHHHHhHHHHhhhchhh
Q 016814 209 RLAIIEYIPLLASQLGVGF 227 (382)
Q Consensus 209 r~~~~~~l~~l~~~~~~~~ 227 (382)
.....++++.+....+...
T Consensus 636 ~htfYeAcg~vIse~p~~~ 654 (1053)
T COG5101 636 KHTFYEACGMVISEVPKTR 654 (1053)
T ss_pred HhHHHHHHhHHHhccchhh
Confidence 7888888888776655433
No 289
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=91.76 E-value=6.1 Score=32.10 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=84.0
Q ss_pred hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC-CcHHHHHHHHH-HHHHHHHhhCHHHHHH
Q 016814 36 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAG-KVTKFCRILNPELAIQ 113 (382)
Q Consensus 36 ~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-~~~~VR~~a~~-~l~~l~~~~~~~~~~~ 113 (382)
....++..+.+++.-+.|..++..+...-...+.+ -++.+...+.+ ++|.+-...+. .++.+... . +
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~-~-----~ 114 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD-Y-----P 114 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC-C-----h
Confidence 44455566777777788888888877654433222 24445555444 35665544333 33433221 1 1
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
...+.+.+...|++..+|.+++-+.-.+.+.. ..+.+..++...+.|+..-|++++..+|..+++.
T Consensus 115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~----~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 115 EFEPVMDEWSTDENFWLRRTAILHQLKYKEKT----DTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 23577888888888888888876544444322 2356677788888998899999988888887765
No 290
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=91.63 E-value=2.9 Score=31.54 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=58.8
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhh----hhhhhHHH-
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPV- 313 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~- 313 (382)
+..++|..-...+..+.. ...|+ ...+..+...+. +++..+...|+..+..+.++||... ....++..
T Consensus 14 l~~~dw~~ileicD~In~--~~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~ 87 (141)
T cd03565 14 LQSEDWGLNMEICDIINE--TEDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV 87 (141)
T ss_pred CCCcCHHHHHHHHHHHhC--CCCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence 344566555544444432 11232 235555566665 4567777778888888888888652 22456655
Q ss_pred HHhhccC---CCccHHHHHHHHHHHHhhhhhH
Q 016814 314 VINASKD---RVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 314 l~~~l~d---~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
+.+.+.+ ....|+..++..+..+...++.
T Consensus 88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 6666543 2346888888888888877754
No 291
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.58 E-value=12 Score=35.27 Aligned_cols=108 Identities=9% Similarity=0.090 Sum_probs=62.3
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-----------------------HHH-------HhhhHhhhhhcCC
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-----------------------LAI-------QHILPCVKELSSD 125 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-----------------------~~~-------~~il~~l~~~~~d 125 (382)
.+..+.+.+.+.++.+++-++-.|..+-+.+-+. .+. ...+..+....++
T Consensus 211 ~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~vK~ 290 (704)
T KOG2153|consen 211 KLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFVKD 290 (704)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666667777777777766666655443221 111 1222333333333
Q ss_pred Cc---h---HHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 126 SS---Q---HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 126 ~~---~---~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
.+ + ..-..|+++++.+....+.-.+.+.++..+..++++....++..++.++..+...
T Consensus 291 ~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~ 354 (704)
T KOG2153|consen 291 LSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN 354 (704)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence 31 1 1223455555555444333334578888888889998889999999998877643
No 292
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.56 E-value=8.5 Score=33.33 Aligned_cols=179 Identities=18% Similarity=0.123 Sum_probs=122.6
Q ss_pred hHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHH---hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHH
Q 016814 76 LVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQ---HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI 151 (382)
Q Consensus 76 ll~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~~~~---~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 151 (382)
+-..+.++++-.- ..|-..|++....+.+.++++...+ ...|-+..++...+-.||-..+..+....--+|+ ...
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~ 133 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR 133 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence 4555566665443 4588889999999999998884332 3456666677777889999999999987767776 333
Q ss_pred ---HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc----
Q 016814 152 ---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---- 224 (382)
Q Consensus 152 ---~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---- 224 (382)
+.++..+...+.|+..++...+.+.+..+...++.+.|.+.+.-.+. .++.+|..++..+..-.....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence 33444444557888999999999999999999998765555443333 457788888777655433322
Q ss_pred --h-h----hh---HHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814 225 --V-G----FF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260 (382)
Q Consensus 225 --~-~----~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 260 (382)
. + .+ ..-++..+...+.|++.-|+..++..+-....
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 0 0 00 13467777888888888888887777655443
No 293
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=91.43 E-value=3.7 Score=29.98 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=20.7
Q ss_pred HHhhhHhhhhhcC-CCchHHHHHHHHHHHhhccccC
Q 016814 112 IQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLG 146 (382)
Q Consensus 112 ~~~il~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~ 146 (382)
...++|.+.+.++ ...++.|.++...++.++...+
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~ 39 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP 39 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC
Confidence 3455666666665 5556666666666666654443
No 294
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.31 E-value=3.3 Score=29.48 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH
Q 016814 88 EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 88 ~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
+..-|..++.+++.+.+..++. .+..+++-.+...++.+ .+|..++++...+.+.++.+
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 3455667777777777733322 22223333333333332 67777777777777666654
No 295
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=22 Score=37.41 Aligned_cols=245 Identities=13% Similarity=0.078 Sum_probs=128.9
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH---hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHh
Q 016814 79 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ---HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQ 153 (382)
Q Consensus 79 ~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~---~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ 153 (382)
.+++-+.-.++.-|..|++.+..++.....+.... .....+.++..|.+..||...-..+..+...+++.. ..+.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 33444444678888889999999888776554332 233345567889999999999999888887666542 3356
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 233 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 233 (382)
++|...-...|....|-..+-.++..... ++.. |.+...++ ..+...........++.-.. ...
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~---~ek~-----~~v~~~c~-------~~i~~~~~~~~~~~~~~slS-d~~ 188 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFA---EEKD-----RHVWFKCD-------PEIFYLVTEILVKETPDSLS-DLR 188 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcC---hhhh-----HHHHHHhh-------HHHHHHHHHHHhccCccccc-hhh
Confidence 66666666666666666666555554432 1111 11100000 00111111111111111100 000
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHh-------hh--HHHHHhhhcCcchHHHHHHHHHHHHhccccChh
Q 016814 234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ-------HI--TPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304 (382)
Q Consensus 234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-------~l--~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 304 (382)
-.-..-+.....+|...++..+..+....|.+.-.. .+ -..+...++++++.+|.+..+.+..+.+.+..-
T Consensus 189 ~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 189 TLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred hcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 000111222344555666666666665555432111 11 123455677888889998888888877654432
Q ss_pred ---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814 305 ---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 305 ---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 340 (382)
....++-|.+.....+.. .+-....+.+-.....+
T Consensus 269 ~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~ 306 (1312)
T KOG0803|consen 269 VMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSL 306 (1312)
T ss_pred cchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhh
Confidence 234556666666665544 44444444444333433
No 296
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=90.89 E-value=15 Score=34.86 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=54.8
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----------HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 145 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----------~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 145 (382)
++..+.+++......|+..|+..+-.++..|+.. .+...++.-+-+...|-.|.-....-++++.+....
T Consensus 571 Vv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~ 650 (1053)
T COG5101 571 VVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEV 650 (1053)
T ss_pred HHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhcc
Confidence 5667778888888999999999999999887644 455566666666777878877777778888776655
Q ss_pred Ch
Q 016814 146 GK 147 (382)
Q Consensus 146 ~~ 147 (382)
+.
T Consensus 651 p~ 652 (1053)
T COG5101 651 PK 652 (1053)
T ss_pred ch
Confidence 53
No 297
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=90.71 E-value=5.8 Score=29.89 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=66.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHh-
Q 016814 45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELA----IQHILPC- 118 (382)
Q Consensus 45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~- 118 (382)
+.++||..=...|..+.. + .....+.+-.+.+-++ ++++.|...|+..+..+++.+|...+ ...++..
T Consensus 14 l~~~dw~~ileicD~In~-----~-~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~ 87 (141)
T cd03565 14 LQSEDWGLNMEICDIINE-----T-EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV 87 (141)
T ss_pred CCCcCHHHHHHHHHHHhC-----C-CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence 355677776666666542 1 1222456667776666 46888988899999999999987632 3456665
Q ss_pred hhhhcCC---CchHHHHHHHHHHHhhccccChH
Q 016814 119 VKELSSD---SSQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 119 l~~~~~d---~~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
+..++.+ ....|+..++..+..+...+..+
T Consensus 88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 6666653 34589999999999888777543
No 298
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=90.27 E-value=27 Score=36.89 Aligned_cols=293 Identities=13% Similarity=0.064 Sum_probs=146.3
Q ss_pred cCCchHHHHHHHHHHHHHHhccChhhh---hhhhhhhhhh----------hcc--C---CCHHHHHHHHHHHHHHHHHhC
Q 016814 7 SNDQDSVRLLAVEGCAALGKLLEPQDC---VAHILPVIVN----------FSQ--D---KSWRVRYMVANQLYELCEAVG 68 (382)
Q Consensus 7 ~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~----------~~~--d---~~~~vR~~a~~~l~~l~~~~~ 68 (382)
.+++...|+.|-..|..|+...+.+.. +..+++++.+ +++ + ....++.-.|.++-.|.+.--
T Consensus 248 d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF 327 (2195)
T KOG2122|consen 248 DDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF 327 (2195)
T ss_pred chhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc
Confidence 445778999999999999987765322 2334444442 111 1 122344444444443433222
Q ss_pred Cccccc---c--hHHHHHHhc-----------CCC-cHHHHHHHHHHHHHHHHhhCHH------HHHHhhhHhhhhhcCC
Q 016814 69 PEPTRM---D--LVPAYVRLL-----------RDN-EAEVRIAAAGKVTKFCRILNPE------LAIQHILPCVKELSSD 125 (382)
Q Consensus 69 ~~~~~~---~--ll~~l~~~l-----------~d~-~~~VR~~a~~~l~~l~~~~~~~------~~~~~il~~l~~~~~d 125 (382)
++.+.. + .+..+-+++ +|. ...+|..+..+|.++ .+|.. .-...++..++..+..
T Consensus 328 DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNL--TFGDv~NKa~LCs~rgfMeavVAQL~s 405 (2195)
T KOG2122|consen 328 DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNL--TFGDVANKATLCSQRGFMEAVVAQLIS 405 (2195)
T ss_pred cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcc--ccccccchhhhhhhhhHHHHHHHHHhc
Confidence 222211 1 122222222 232 245788888888776 33322 1123466666666666
Q ss_pred CchHHHHHHHHHHHhhccccCh---HhHH--HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH----hhhHHHH
Q 016814 126 SSQHVRSALASVIMGMAPLLGK---DATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPA 196 (382)
Q Consensus 126 ~~~~vr~~a~~~l~~l~~~~~~---~~~~--~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~----~~~llp~ 196 (382)
....+....+..|..+.=..+. ..+. -.+.-+..-.+....+..-++++.+|..+.......+. .+..+.+
T Consensus 406 ~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaF 485 (2195)
T KOG2122|consen 406 APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAF 485 (2195)
T ss_pred ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHH
Confidence 6666666666666666422211 0000 01111111123333333334444444444333222111 1233444
Q ss_pred HHHHhcCCCc----hHHHHHHHHhHHHHhhhc----hh-h-hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814 197 IVELAEDRHW----RVRLAIIEYIPLLASQLG----VG-F-FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 266 (382)
Q Consensus 197 l~~~~~d~~~----~vr~~~~~~l~~l~~~~~----~~-~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 266 (382)
|..++.-+.. .+-..+-..|..+...+. .. . .....+..+.+.|++.+-.|-..++..|+.+.-....+.
T Consensus 486 LVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQ 565 (2195)
T KOG2122|consen 486 LVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQ 565 (2195)
T ss_pred HHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHH
Confidence 5444432211 111222222222222221 11 1 123467778888888888888899999988876543321
Q ss_pred ---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814 267 ---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 301 (382)
Q Consensus 267 ---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 301 (382)
+....++.+.+++.+++..+-+.++.++..+..+-
T Consensus 566 q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 566 QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 34457788888898888888888888888776443
No 299
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=89.99 E-value=11 Score=31.89 Aligned_cols=138 Identities=16% Similarity=0.187 Sum_probs=84.5
Q ss_pred HhhHHHHHHhhcCCC----hHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHH-HhHHHHhhhchh
Q 016814 152 EQLLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE-YIPLLASQLGVG 226 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~----~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~-~l~~l~~~~~~~ 226 (382)
-..+|.+..-+.++. ..--..++..+..+++..+.+. +-..+..+.+... +-+...+. ....+.+.+.++
T Consensus 110 la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~----La~il~~ya~~~f-r~~~dfl~~v~~~l~~~f~P~ 184 (262)
T PF14225_consen 110 LALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPN----LARILSSYAKGRF-RDKDDFLSQVVSYLREAFFPD 184 (262)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCcc----HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhCch
Confidence 345577777666655 1334466678888876555433 3333444444444 43344333 334444545444
Q ss_pred hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc
Q 016814 227 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLA 298 (382)
Q Consensus 227 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 298 (382)
. ..+++..+..++.....++|....+.+..+......+ ....+++..+.+++..+.|.. |++.+..+.
T Consensus 185 ~-~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~e---AL~VLd~~v 253 (262)
T PF14225_consen 185 H-EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWME---ALEVLDEIV 253 (262)
T ss_pred h-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHH---HHHHHHHHH
Confidence 3 2356777888888888999999999999998876432 244567888888888777754 444444443
No 300
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=89.48 E-value=31 Score=36.47 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=55.5
Q ss_pred hhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 308 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
...+..+++.|++.+-.+..+++.+|-.+...-..+ .......+.|..+++..+..+-...+.|+..+..
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 457788999999999999999999998887654432 2346778889999999999888888888887653
No 301
>COG2733 Predicted membrane protein [Function unknown]
Probab=89.28 E-value=15 Score=32.51 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=40.3
Q ss_pred HHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHH
Q 016814 169 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248 (382)
Q Consensus 169 vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 248 (382)
|-....+.+..+...+..+.+...+-..+.+-+...+|. ..+...|..+....+.+.+.+.++..+...+.+ .+++
T Consensus 127 v~~~t~~l~~~~~~lld~~~iq~~ik~~v~~~i~e~~~~--~~~~~vL~~l~~d~r~q~l~D~~~~~L~r~~~~--~~v~ 202 (415)
T COG2733 127 VSQETLKLLSQLLELLDDDDIQRVIKRAVIRAIAEVYLG--PTAGRVLESLTADDRHQALLDKLIDRLIRWLLN--DKVR 202 (415)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hhhH
Confidence 333344444444444554444222222233333333333 333444445544445555555555555554443 4555
Q ss_pred HHHHHHHHHHHH
Q 016814 249 DAAANNLKRLAE 260 (382)
Q Consensus 249 ~~a~~~l~~~~~ 260 (382)
+.+...+..+.+
T Consensus 203 ~~i~~~i~r~~~ 214 (415)
T COG2733 203 EFIAAVIVRYLE 214 (415)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 302
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=15 Score=34.01 Aligned_cols=146 Identities=13% Similarity=0.157 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHHH---hhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH----
Q 016814 193 LLPAIVELAEDRHWRVRLAIIEYIPLLA---SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---- 265 (382)
Q Consensus 193 llp~l~~~~~d~~~~vr~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---- 265 (382)
+...+.+++.++.-.+.......+.... ..+|..+....++..+.+++...+...|......+..+.-.+..+
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence 4445555666655444433333333322 234566667889999999998888889988888888777655443
Q ss_pred HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh-h---hh------hhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814 266 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-E---IT------CSRLLPVVINASKDRVPNIKFNVAKVLQS 335 (382)
Q Consensus 266 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~---~~------~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 335 (382)
...+.=+..+.++.+|+.|.+.+..+..+..+.-.... + .+ ...+...++..+...+|---...+..+..
T Consensus 512 ~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~ 591 (743)
T COG5369 512 FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVR 591 (743)
T ss_pred hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Confidence 22333355678888999999999999999987532221 1 11 23455566666666676544444555555
Q ss_pred Hhh
Q 016814 336 LIP 338 (382)
Q Consensus 336 i~~ 338 (382)
++.
T Consensus 592 ~aa 594 (743)
T COG5369 592 NAA 594 (743)
T ss_pred HHh
Confidence 544
No 303
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=88.55 E-value=0.85 Score=25.43 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=21.2
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFC 103 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~ 103 (382)
.+|.+.+++.++++.++..++.+|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5777777777777888888888877764
No 304
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=88.45 E-value=8.4 Score=28.56 Aligned_cols=134 Identities=13% Similarity=0.053 Sum_probs=83.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhChHHH----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh-hhhhhh-hHHHH
Q 016814 241 QDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITCSR-LLPVV 314 (382)
Q Consensus 241 ~d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~-~l~~l 314 (382)
...+.+-++.....++.|+- .+-.+ .-+++..+...+..++....+-++..++.++..-.. +.+.+. =+|.+
T Consensus 27 ~tt~~eakeqv~ANLANFAY--DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~pli 104 (173)
T KOG4646|consen 27 TTTNIEAKEQVTANLANFAY--DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLI 104 (173)
T ss_pred HhccHHHHHHHHHHHHhhcc--CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceE
Confidence 34566777777777777763 33221 235777788888888988888888887776633222 222222 25677
Q ss_pred HhhccCCCccHHHHHHHHHHHHhhhhh---HHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 315 INASKDRVPNIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 315 ~~~l~d~~~~vR~~a~~~l~~i~~~~~---~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
+..+.|++..+-.+++.++-.+...-. +......++..+.........+.|..|..++....
T Consensus 105 i~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 105 IFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred EeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 888999888888888887776643211 22334555666665554555566666666665543
No 305
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=88.37 E-value=20 Score=35.24 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH--h--HHHhhHHHHHHhhcCC
Q 016814 92 RIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--A--TIEQLLPIFLSLLKDE 165 (382)
Q Consensus 92 R~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~--~~~~l~~~l~~~l~d~ 165 (382)
-+.|++++..+...|.. ..+.+.++..+.+++++.++.++..++.++..|+..-++. . ..+.+++.+.+++...
T Consensus 73 v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~ 152 (819)
T KOG1877|consen 73 VKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHER 152 (819)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcc
Confidence 34456677776666543 3667788899999999999999999999999998554322 1 2367788888887652
Q ss_pred -C----hHHHHHHHHhhHHhh
Q 016814 166 -F----PDVRLNIISKLDQVN 181 (382)
Q Consensus 166 -~----~~vr~~~~~~l~~~~ 181 (382)
+ ..+|.+-++++..+.
T Consensus 153 ~~~~~~~~lr~agl~gLsa~v 173 (819)
T KOG1877|consen 153 GDDDMKDCLRAAGLQGLSAVV 173 (819)
T ss_pred cchhhhhhccHhhhhhHHHHH
Confidence 2 345555556655543
No 306
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=88.28 E-value=5.7 Score=28.21 Aligned_cols=72 Identities=13% Similarity=0.255 Sum_probs=45.6
Q ss_pred hHHHHHHhcCCCc----HHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh
Q 016814 76 LVPAYVRLLRDNE----AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA 149 (382)
Q Consensus 76 ll~~l~~~l~d~~----~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 149 (382)
++..+.+.++|.+ ..-|+.++.+++.+.+.+++. ....++.-.+...++ .++.|..++++...+...++.+.
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 3444555555554 234888888888888866543 222334444444554 45688889888888888777543
No 307
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.88 E-value=8.6 Score=28.03 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814 195 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 263 (382)
Q Consensus 195 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 263 (382)
+.+.....|++|..=...+..+..+... +... ...++..+.+-|++.++.|+..++..|..++..-+
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~-s~~~-~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYEEIAKLTRK-SVGS-CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHc-CHHH-HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 3455555566655445555555555433 2222 23678888888888888998999999888887543
No 308
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=87.69 E-value=26 Score=33.29 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=62.1
Q ss_pred HHHHHhccccChhhhhhhhHHHHHhhc-cCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH----hcCCCCccHHh
Q 016814 292 RAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE----LTEDPDVDVRF 366 (382)
Q Consensus 292 ~~l~~l~~~~~~~~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~----l~~d~~~~vr~ 366 (382)
..++.+.+.+.++ ...+++-.+...+ ..+...+|.+.+..++.+++...++.....+.|.+-. ++.|++|-++.
T Consensus 463 ~l~~~~~~~l~~~-~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q 541 (559)
T PF14868_consen 463 SLLSFFIQLLDPQ-LIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQ 541 (559)
T ss_pred HHHHHHHHhcChH-HHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHH
Confidence 3334444444444 4455666666666 3444559999999999999877766555666666655 58999999999
Q ss_pred HHHHHHHHHHHHh
Q 016814 367 FATQAIQSIDHVM 379 (382)
Q Consensus 367 ~a~~al~~~~~~~ 379 (382)
.|.+|++.++..-
T Consensus 542 ~ALeAF~~FAe~T 554 (559)
T PF14868_consen 542 HALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998754
No 309
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=87.62 E-value=8.6 Score=27.70 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 266 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 266 (382)
..++..+.+.+.+++|.+...|+..+..+++++|..+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 3456666666677777777777777777777766543
No 310
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=87.57 E-value=0.76 Score=23.79 Aligned_cols=29 Identities=34% Similarity=0.334 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC
Q 016814 50 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 86 (382)
Q Consensus 50 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d 86 (382)
|.+|..++..|+++.. ...++.+.+.++|
T Consensus 1 ~~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGD--------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence 3566666666666531 2345555555554
No 311
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=87.56 E-value=4.8 Score=35.37 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=34.3
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH----HhhhHHHHHhhhcC-cchHHHHHHHHHHHHhcc
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINN-PHYLYRMTILRAISLLAP 299 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~ 299 (382)
..+..+++.+...++.|...|+..++.+..++|..+. ...+...+..++.+ .+..+++.....+...++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 4455555555656666666666666666666555332 22344444444442 234444444444444443
No 312
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=87.48 E-value=4.4 Score=27.49 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=40.9
Q ss_pred HHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHH
Q 016814 267 AMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334 (382)
Q Consensus 267 ~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~ 334 (382)
+...++..+...+ ..++..+|+..+.++.++....|.. .-+..++..+-....|.+..+-..|.+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3444555555543 3345677777777777777666543 345566666666666666666666655554
No 313
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=87.45 E-value=8.8 Score=27.64 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 228 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 228 (382)
..+...+.+-+++++|++...++..+..+.+..|+.+.
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~ 73 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFH 73 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHH
Confidence 56777777778889999999999999999998887654
No 314
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=87.39 E-value=9.2 Score=27.84 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=22.9
Q ss_pred hhHHHHHHHHhc-CCCchHHHHHHHHhHHHHhhhc
Q 016814 191 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG 224 (382)
Q Consensus 191 ~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~ 224 (382)
..++|.+...++ ....+.|.+++..++.++....
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~ 39 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP 39 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC
Confidence 566777777666 6666777777777777766543
No 315
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.18 E-value=26 Score=32.69 Aligned_cols=284 Identities=13% Similarity=0.110 Sum_probs=150.1
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCC
Q 016814 49 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSD 125 (382)
Q Consensus 49 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d 125 (382)
.-..|..+++.+.......+-+. ...+......++..+. .++|.++++.+..+++.-.. ......+...+..--.+
T Consensus 3 ~l~~R~~a~~~l~~~i~~~~~~~-i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKYPLSS-IEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred CHHHHHHHHHHHHHHHHhCCchH-HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 34567778888777776665532 2345555555665553 66999999999999886543 12222333333333334
Q ss_pred CchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC---------------------------hHHHHHHHHhhH
Q 016814 126 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF---------------------------PDVRLNIISKLD 178 (382)
Q Consensus 126 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~---------------------------~~vr~~~~~~l~ 178 (382)
++-..|-.+..+|..=++.+. .+...+.|.+...+.... ...-...+.-+.
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 159 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLV 159 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHH
Confidence 444566666666655444332 133455555555442211 011111122222
Q ss_pred Hhhhhh---chhhHhhhHHHHHHHHhcCCC-chHHHHHHHHhHHHHh--hhchhhhHHHHHHHHHHHhccchhHHHHHHH
Q 016814 179 QVNQVI---GIDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLAS--QLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 252 (382)
Q Consensus 179 ~~~~~~---~~~~~~~~llp~l~~~~~d~~-~~vr~~~~~~l~~l~~--~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 252 (382)
.+.++- -.+.....++..+..++...+ ...-..++..+..+.. .++.+.+. .++..+-...+ ..+..+.+.
T Consensus 160 nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-~~i~vLCsi~~--~~~l~~~~w 236 (464)
T PF11864_consen 160 NVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-PCIEVLCSIVN--SVSLCKPSW 236 (464)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-HHHHHHhhHhc--ccccchhHH
Confidence 222211 112223556666666654433 3333566777776654 22332222 23333332222 225666777
Q ss_pred HHHHHHHHHhChHHHHhhhHHHHHhhh--cC----cchHHHHHHHHHHHHhccccChh----hhh--hhhHHHHHhhccC
Q 016814 253 NNLKRLAEEFGPEWAMQHITPQVLEMI--NN----PHYLYRMTILRAISLLAPVMGSE----ITC--SRLLPVVINASKD 320 (382)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~l~~~l~~~l--~~----~~~~~r~~a~~~l~~l~~~~~~~----~~~--~~~l~~l~~~l~d 320 (382)
+.+..+++.... ...+..+...+ .+ ++..+-..|+..++.+.-..+.+ ... ..++|.+...++.
T Consensus 237 ~~m~nL~~S~~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 237 RTMRNLLKSHLG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred HHHHHHHcCccH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 777777753322 22444555555 22 23455568888888876555322 112 3489999999998
Q ss_pred CCccHHHHHHHHHHHHh-hhhhH
Q 016814 321 RVPNIKFNVAKVLQSLI-PIVDQ 342 (382)
Q Consensus 321 ~~~~vR~~a~~~l~~i~-~~~~~ 342 (382)
+++.|=...+..+..+. ..++.
T Consensus 313 ~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 313 NSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred CCCeehHHHHHHHHHHHhHhhhh
Confidence 87777777777777666 44443
No 316
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.15 E-value=24 Score=32.46 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=56.8
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHH--hhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh----H
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCR--ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----D 148 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~ 148 (382)
++..++.....--.+..|...+++|.-+-. .+.++ .++..+..++.-.+...|..+...+...+..++. +
T Consensus 20 el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i~~~----~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~ 95 (616)
T KOG2229|consen 20 ELKDLLRTNHTVLPPELREKIVKALILLRNKNLIVAE----DLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKND 95 (616)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccCcCCHH----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccc
Confidence 344444443334457888888888765532 23344 4556666666556666788777666655543321 1
Q ss_pred hHHHhhHHHHHHhhcCCChHHHHHHHHhhHH
Q 016814 149 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 179 (382)
Q Consensus 149 ~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~ 179 (382)
.....+-.++..++.++++.--..++..+..
T Consensus 96 klnkslq~~~fsml~~~d~~~ak~a~~~~~e 126 (616)
T KOG2229|consen 96 KLNKSLQAFMFSMLDQSDSTAAKMALDTMIE 126 (616)
T ss_pred hHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 2234555677778887776543334333333
No 317
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=86.59 E-value=2.9 Score=38.41 Aligned_cols=109 Identities=9% Similarity=0.098 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHH---HhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAE---EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-- 304 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-- 304 (382)
..+...+.+.|.+|+..|...+...+-.++- .+|..+..+.++..+.+++..++...|....+.+-.+.-++..+
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 3567777888888777776666666555543 23445567789999999998888888888888888877666554
Q ss_pred -hhhhhh-HHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 305 -ITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 305 -~~~~~~-l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
.+..++ +..++.+.+|+...|...+++.+..+..
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 122222 4567888999999999999999887754
No 318
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=86.48 E-value=12 Score=30.03 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=18.1
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLA 259 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 259 (382)
.++..+.+...+.=.+||..|..++..+.
T Consensus 7 ~~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 7 QIIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555556677777777777776
No 319
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=86.36 E-value=30 Score=32.68 Aligned_cols=104 Identities=11% Similarity=-0.013 Sum_probs=55.8
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh----hhhhhh
Q 016814 235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRL 310 (382)
Q Consensus 235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~ 310 (382)
.+.....|-++.+|..+...++.....++.-.+.-..+...=..|.|.+..+|......+..+....+.. .+.+.+
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRF 358 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERF 358 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3445556666777777777777666654322111122222333455666677777777776665544332 233444
Q ss_pred HHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 311 LPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 311 l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
...++.++.-...-||..+++.+..+..
T Consensus 359 k~rILE~~r~D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 359 KDRILEFLRTDSDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 4444554433333377777777766654
No 320
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=85.93 E-value=19 Score=30.07 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=62.6
Q ss_pred chHHHHHHhcCCCcHH----HHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCc--hHHHHHHHHHHHhhccc--cC
Q 016814 75 DLVPAYVRLLRDNEAE----VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS--QHVRSALASVIMGMAPL--LG 146 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~----VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~--~~vr~~a~~~l~~l~~~--~~ 146 (382)
.-+|.++++++-++.. .-....+.++.+....+. .=+..+.++++|++ ..||.++++++..++.. ..
T Consensus 73 ~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~-----G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~ 147 (249)
T PF06685_consen 73 RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD-----GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS 147 (249)
T ss_pred hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC-----CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4577788777543321 112233333333332222 12356667777654 58999999999988743 23
Q ss_pred hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcC
Q 016814 147 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 203 (382)
Q Consensus 147 ~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d 203 (382)
++...+.+..++...++.....+-...+..+..+. . ..++|.+.++..+
T Consensus 148 Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~---~-----~EL~~~I~~~f~~ 196 (249)
T PF06685_consen 148 REEVIQYFRELLNYFLERNPSFLWGSLVADICDLY---P-----EELLPEIRKAFED 196 (249)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcC---H-----HHhHHHHHHHHHc
Confidence 44455566666666565544443333333333322 2 5667777766543
No 321
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=85.81 E-value=9.1 Score=33.73 Aligned_cols=99 Identities=13% Similarity=0.209 Sum_probs=68.6
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCc-ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHh
Q 016814 44 FSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPC 118 (382)
Q Consensus 44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~ 118 (382)
....++|.+=.-+|.. ++.+ ......+..+.+.++..++.|...|+..+..+...|+.... ...+...
T Consensus 20 ~nT~enW~~IlDvCD~-------v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~e 92 (462)
T KOG2199|consen 20 KNTSENWSLILDVCDK-------VGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTE 92 (462)
T ss_pred ccccccHHHHHHHHHh-------hcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHH
Confidence 3345566654444444 3332 22345788999999999999999999999999988876532 3356667
Q ss_pred hhhhcC-CCchHHHHHHHHHHHhhccccChHh
Q 016814 119 VKELSS-DSSQHVRSALASVIMGMAPLLGKDA 149 (382)
Q Consensus 119 l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~ 149 (382)
+..++. ...+.|+......+..++..+.++.
T Consensus 93 l~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 93 LRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 777777 4567788888888888877665443
No 322
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=85.79 E-value=33 Score=34.92 Aligned_cols=58 Identities=24% Similarity=0.198 Sum_probs=39.7
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHHh
Q 016814 40 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRI 105 (382)
Q Consensus 40 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~--~~VR~~a~~~l~~l~~~ 105 (382)
...++=.|.|...+..|++.+..+-.. ..-..+.+.+.|+. +.||.+|+.+|...+..
T Consensus 647 w~~QLr~drDVvAQ~EAI~~le~~p~~--------~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~ 706 (1180)
T KOG1932|consen 647 WVYQLRQDRDVVAQMEAIESLEALPST--------ASRSALTRTLEDERYFYRIRIAAAFALAKTANG 706 (1180)
T ss_pred HHHHHHhcccHHHHHHHHHHHHcCCcc--------hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcc
Confidence 344555788877788888887754321 12255566666664 78999999999988765
No 323
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.15 E-value=54 Score=34.50 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=25.8
Q ss_pred hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 306 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
.++.++..+.....|.++++..+++.++..+..
T Consensus 1100 vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1100 VWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 467777777788888888888888888877654
No 324
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=85.13 E-value=9.4 Score=25.87 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=51.1
Q ss_pred hhhhhHHHHHhh-ccCCCccHHHHHHHHHHHHhhhhhHHHHH--HhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814 306 TCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQAIQS 374 (382)
Q Consensus 306 ~~~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~~~~~~~~~--~~i~~~l~~l~~d~~~~vr~~a~~al~~ 374 (382)
+...++.++... ...++.++|...++++..+....+...-. ..++..+.....|.+.++-..|.+.+..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 556666666665 45557789999999999999877654322 5677777777888899988888887764
No 325
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=84.65 E-value=36 Score=32.15 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=88.0
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh----HHH
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----TIE 152 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~ 152 (382)
-..++....|-++.+|..+...++..+...+.-.+.-..+...-=.+.|.+..||....+.+..++...+... +.+
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3445566688888999999888888777665554444444555557889999999999999999887665322 234
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHh
Q 016814 153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 221 (382)
Q Consensus 153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~ 221 (382)
.+...+.+++.-...-||..+++.+..+.....-+ ..-+-.+..+.-|..++-|....+.+..+++
T Consensus 357 RFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L~---~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 357 RFKDRILEFLRTDSDCVRICSIKSLCYLRILGVLS---SSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHhcccc---hhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 44444555543333349999998888765432111 2233344445556666644444444444443
No 326
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.52 E-value=22 Score=29.47 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc-cccChh
Q 016814 231 KLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLA-PVMGSE 304 (382)
Q Consensus 231 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~-~~~~~~ 304 (382)
.+.|.+....++ +....|..++..++.+++.-..+. ....++|.++......+...+..|...++.+. .-.|..
T Consensus 124 ylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~ 203 (293)
T KOG3036|consen 124 YLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLY 203 (293)
T ss_pred hhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHH
Confidence 355555554444 456788888888888888654432 34568888888888888778888888887763 333322
Q ss_pred h---------hhhhhHH-HHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 305 I---------TCSRLLP-VVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 305 ~---------~~~~~l~-~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
+ ....++. .+.++.+.+.+.+=..+++..-.+..
T Consensus 204 YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 204 YICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 1 1122222 33444555555544555555544443
No 327
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=84.17 E-value=1.4 Score=24.46 Aligned_cols=29 Identities=31% Similarity=0.287 Sum_probs=18.9
Q ss_pred hHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 348 TIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 348 ~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
..+|.|.+++.+++.+++..|+.++..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35566666666666777777777776653
No 328
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.76 E-value=38 Score=31.68 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=52.6
Q ss_pred HHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814 260 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 260 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 339 (382)
-.+|.+.-.+.++..+...+--.+..+|...-.+.+.+...-+ .-.++..+-+..+|..-++-.+++.+++.+...
T Consensus 631 iamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnP----Qm~vfDtL~r~shd~dl~v~~ntIfamGLiGAG 706 (881)
T COG5110 631 IAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNP----QMNVFDTLERSSHDGDLNVIINTIFAMGLIGAG 706 (881)
T ss_pred hhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCc----chHHHHHHHHhccccchhHHHHHHHHhhccccC
Confidence 3455554445555565555555677888887777776653222 246777888889998899999999999888654
Q ss_pred h
Q 016814 340 V 340 (382)
Q Consensus 340 ~ 340 (382)
-
T Consensus 707 T 707 (881)
T COG5110 707 T 707 (881)
T ss_pred c
Confidence 3
No 329
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.28 E-value=43 Score=31.93 Aligned_cols=52 Identities=23% Similarity=0.199 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 016814 54 YMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 105 (382)
Q Consensus 54 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~ 105 (382)
..|++++-.+....+.-.+.+.++..++.+.+|+...++..+++++..+.+.
T Consensus 303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~ 354 (704)
T KOG2153|consen 303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN 354 (704)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence 4555666666666666666677899999999999999999999999887653
No 330
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=82.64 E-value=24 Score=28.63 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=73.3
Q ss_pred hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHH-HHHHHHHHhCCcccccchHHHHHH
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVAN-QLYELCEAVGPEPTRMDLVPAYVR 82 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~-~l~~l~~~~~~~~~~~~ll~~l~~ 82 (382)
|.+++.-+.|..|+..+...-+..+.. -++.+..++.+. +|.+=-..+. .++.+... .....+.+.+
T Consensus 54 Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~~~~~~l~~ 122 (208)
T cd07064 54 LWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD------YPEFEPVMDE 122 (208)
T ss_pred HHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------ChhHHHHHHH
Confidence 444444466666766666544444332 234444454433 4555443333 33443221 1234677788
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 144 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 144 (382)
...|++.=.|.+|+-+...+.+.... +.+...+...+.|+...|+.+...+|..++..
T Consensus 123 W~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 123 WSTDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 88888755555555454445444333 34566777889999999999999999999875
No 331
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=82.23 E-value=15 Score=26.05 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=45.4
Q ss_pred hHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814 207 RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 266 (382)
Q Consensus 207 ~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 266 (382)
.-|..+++.++.+.+..|+.. +.+++.-.+...+.. ++.|..+++++..++..+..+.
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHH
Confidence 558899999999988666432 346777777777764 5699999999999999988754
No 332
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.21 E-value=13 Score=34.27 Aligned_cols=99 Identities=7% Similarity=0.130 Sum_probs=68.8
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHH
Q 016814 238 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPV 313 (382)
Q Consensus 238 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~ 313 (382)
..+.+++|..-...+..+..--. + ....+..+.+.+.+++..+..-|+..|..+.++||..+ ..+.+++.
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~~~--~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINSTEG--G----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred ccccCccHHHHHHHHHHHhcCcc--C----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45667777665544444322111 1 13567778888888888888888888888899999753 34677777
Q ss_pred HHhhccCC--CccHHHHHHHHHHHHhhhhhH
Q 016814 314 VINASKDR--VPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 314 l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~ 342 (382)
.+...+.. ...||..++..|..+...++.
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 76666554 456999999999999988765
No 333
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=81.82 E-value=39 Score=30.40 Aligned_cols=69 Identities=9% Similarity=0.115 Sum_probs=50.0
Q ss_pred hhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh-hhh--hhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 270 HITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE-ITC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 270 ~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~-~~~--~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
.++..+..++..++ +.+-..|+.=++.+.+.++.. ... -.--..+.+++++++++||..|+.++-.+..
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 47777777776555 667777888888888777643 121 1234467788999999999999999887653
No 334
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=81.58 E-value=25 Score=28.06 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=51.3
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814 78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 144 (382)
Q Consensus 78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 144 (382)
+.+.+...|++.-+|.+++..+...... +...+.+++.+..+..|++..||.++..+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 7778888888888888887777666554 223456788888999999999999999999999875
No 335
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=81.12 E-value=10 Score=24.72 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhccc-cChhhhh-hhhHHHHHhhc-cCCCccHHHHHHHHHHHHhhhh
Q 016814 287 RMTILRAISLLAPV-MGSEITC-SRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 287 r~~a~~~l~~l~~~-~~~~~~~-~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~ 340 (382)
..+++.+++.++.. .|..... ..+++.+.+.. +++...+|..|..+|+.++...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 35677888887654 4444332 35777777765 4667778888888888887643
No 336
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.36 E-value=24 Score=32.62 Aligned_cols=99 Identities=12% Similarity=0.159 Sum_probs=73.5
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH----HHHhhhHh
Q 016814 43 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPC 118 (382)
Q Consensus 43 ~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~ 118 (382)
..+.++||..=...|..+.. ......+.+-.+.+.+++.++.|...|+..|..+++.||... ....+++-
T Consensus 12 ~~l~~pDWa~NleIcD~IN~------~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINS------TEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred ccccCccHHHHHHHHHHHhc------CccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35578898888777777652 111123678888888898888999999999998999888763 34456676
Q ss_pred hhhhcCCC--chHHHHHHHHHHHhhccccCh
Q 016814 119 VKELSSDS--SQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 119 l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~ 147 (382)
++...+.. +..||..++..|..+.+.++.
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 66666554 568999999999999887764
No 337
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=79.97 E-value=48 Score=30.32 Aligned_cols=133 Identities=13% Similarity=0.022 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCC
Q 016814 11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRD 86 (382)
Q Consensus 11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~d 86 (382)
.+||..+++.+..+...-..+.+...-+-.++.+.+ .+.++.....+..++.+-++.... ......++.++-.+.-
T Consensus 196 t~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rR 275 (832)
T KOG3678|consen 196 TSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRR 275 (832)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeeccc
Confidence 467888888888776544333333333334444443 334455556666666655433221 1112345555556666
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcc
Q 016814 87 NEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 143 (382)
Q Consensus 87 ~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~ 143 (382)
.+|.+-..++-+|++.+-+-+.+ .+...+-+.+..+....+.-.|-.+|-+++.++.
T Consensus 276 t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 276 TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 77887777788888876654433 2333455566666667778888888888887764
No 338
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=79.82 E-value=58 Score=31.12 Aligned_cols=182 Identities=12% Similarity=0.134 Sum_probs=90.7
Q ss_pred hHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhC----HH-------HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc
Q 016814 76 LVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILN----PE-------LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 142 (382)
Q Consensus 76 ll~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~----~~-------~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~ 142 (382)
.+..+-++..+. +.+|+.+.++.+..+..-+. .+ ...+.+.|...+++..+.. -..+......+.
T Consensus 130 Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~kh--w~~afPL~t~lL 207 (552)
T PF14222_consen 130 FMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKH--WNVAFPLVTTLL 207 (552)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcch--hhhHHHHHHHHH
Confidence 344444444333 56799999999888754321 11 2334455555555554221 223455555444
Q ss_pred cccChHhHHHhhHH-HHH---HhhcCCChHHHHHHHHhhHHhhhhhc----hhh---HhhhHHHHHHHHh--cCCCchHH
Q 016814 143 PLLGKDATIEQLLP-IFL---SLLKDEFPDVRLNIISKLDQVNQVIG----IDL---LSQSLLPAIVELA--EDRHWRVR 209 (382)
Q Consensus 143 ~~~~~~~~~~~l~~-~l~---~~l~d~~~~vr~~~~~~l~~~~~~~~----~~~---~~~~llp~l~~~~--~d~~~~vr 209 (382)
...+++.+.+.-.+ .+. ..++|. ..|..++.++.++.-.+= .|. ....+-+.+..++ +.++|-.+
T Consensus 208 CvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~~ 285 (552)
T PF14222_consen 208 CVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIPR 285 (552)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccCC
Confidence 44456666555553 444 345654 888999999988754321 111 1122222222222 23345444
Q ss_pred H-HHHHHhHHHHhhhchhhh----HHHHHHHHHHHhc-----cchhHHHHHHHHHHHHHHHH
Q 016814 210 L-AIIEYIPLLASQLGVGFF----DDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEE 261 (382)
Q Consensus 210 ~-~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~ 261 (382)
. ..++.+.++...+|.... .+-++|.+..-.. .-+++=.-.++.++-.++..
T Consensus 286 D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~ 347 (552)
T PF14222_consen 286 DPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSD 347 (552)
T ss_pred ChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHh
Confidence 4 555556666655554433 2334444433222 11244444555665555544
No 339
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.74 E-value=50 Score=30.39 Aligned_cols=353 Identities=15% Similarity=0.149 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCCCcHH
Q 016814 15 LLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAE 90 (382)
Q Consensus 15 ~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~l~d~~~~ 90 (382)
+.|...+..+|..... .-....+...+.+++.-.+...-...+..|..++-....... ...++..+.+++..+.+.
T Consensus 281 rva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~d 360 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPD 360 (791)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHH
Confidence 3455566666665433 223455777777777777777777777777776643333221 235788888999999999
Q ss_pred HHHHHHHHHHHHHH--hhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH----hHHHhhHHHHHHh-hc
Q 016814 91 VRIAAAGKVTKFCR--ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSL-LK 163 (382)
Q Consensus 91 VR~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~-l~ 163 (382)
.|++.+..+-++.- ...+.-+...++|.+..++.+.... ..|...+..+.- +++ ......++.+.+. +.
T Consensus 361 L~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~--dD~~K~MfayTdci~~lmk~v~~ 436 (791)
T KOG1222|consen 361 LRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSC--DDDAKAMFAYTDCIKLLMKDVLS 436 (791)
T ss_pred HHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhcc--CcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999887743 2334556668899999998876542 234444444321 111 1123444444433 33
Q ss_pred CCChHHHHHHHHhhHHhhhhh-chhhH--hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch--hhhHHHHHHHHHH
Q 016814 164 DEFPDVRLNIISKLDQVNQVI-GIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ 238 (382)
Q Consensus 164 d~~~~vr~~~~~~l~~~~~~~-~~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ 238 (382)
.....|-...+...-.++-.- ..+.+ -+.+--.+...++..+ .-+++.+..++++-|+ ..|.+.+-.....
T Consensus 437 ~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D----~lLmK~vRniSqHeg~tqn~FidyvgdLa~i 512 (791)
T KOG1222|consen 437 GTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRD----LLLMKVVRNISQHEGATQNMFIDYVGDLAGI 512 (791)
T ss_pred cCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccc----hHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 333444333332111111100 00000 0111111222222222 1233444445554443 2233333222222
Q ss_pred HhccchhHHHHHHHHHHHHHHHHhC----hHH--HHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccChh--hhhh
Q 016814 239 WLQDKVYSIRDAAANNLKRLAEEFG----PEW--AMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSE--ITCS 308 (382)
Q Consensus 239 ~l~d~~~~vr~~a~~~l~~~~~~~~----~~~--~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~--~~~~ 308 (382)
.-.|.+.+ -.++++|.++..-- .+. -...++|.+...+.-.- .......+-+++.++.-.... ....
T Consensus 513 ~~nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a 589 (791)
T KOG1222|consen 513 AKNDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA 589 (791)
T ss_pred hhcCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence 23344433 34556666554211 111 12357777776664211 112222223333333221111 1234
Q ss_pred hhHHHHHhhccCCC--ccHHHHHHHHHHHHhhhhhHHH--H-HHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 309 RLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSM--V-EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 309 ~~l~~l~~~l~d~~--~~vR~~a~~~l~~i~~~~~~~~--~-~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
.++|.++.+++... .+.....+..+-++..+-.... + ....--.+.-+.+|.+.++|...-.++.-++..
T Consensus 590 ~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 590 KLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred ccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 56666666654322 2344444444444444322111 1 123333455678999999999988888877654
No 340
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=79.28 E-value=51 Score=30.18 Aligned_cols=146 Identities=16% Similarity=0.093 Sum_probs=81.1
Q ss_pred HHHHHHHHhccchh--HHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhccccCh---hh
Q 016814 232 LGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGS---EI 305 (382)
Q Consensus 232 l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~---~~ 305 (382)
-+..+..++..++. .||-.+...+..+...-..+.....-+..++..-+.. ........+..++.+-+.... ..
T Consensus 181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L 260 (832)
T KOG3678|consen 181 GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL 260 (832)
T ss_pred hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34455666666554 5688888888877654332322222233333333322 234444455555555433221 12
Q ss_pred hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 306 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
.....+..++..+....|.+-..++-+|+.++-+-+.. .....+-.-|--+....|.-.|..|+-|+..++.
T Consensus 261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 23334455555666666777778888888887665432 2334444444445556677789999988887764
No 341
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.36 E-value=8.7 Score=30.85 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc---ccChh
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAP---VMGSE 304 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~---~~~~~ 304 (382)
..++|.+...+.+.+..-|--|-+-+..+....|... ...+++..+...+...+.++...++.++..+.- ..|..
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 4577888888888888778888888888877666332 345566667777878888888888888888753 34544
Q ss_pred --hhhhhhHHHHHhh
Q 016814 305 --ITCSRLLPVVINA 317 (382)
Q Consensus 305 --~~~~~~l~~l~~~ 317 (382)
+|..+++|.+-.+
T Consensus 193 LVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 193 LVPFYRQLLPVLNTF 207 (262)
T ss_pred hhhHHHHhhhhhhhh
Confidence 5777888876544
No 342
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=77.37 E-value=1.1e+02 Score=33.09 Aligned_cols=140 Identities=17% Similarity=0.138 Sum_probs=82.6
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHH-
Q 016814 34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELA- 111 (382)
Q Consensus 34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~~- 111 (382)
.+.++.+...++..+++.++..+......+-..+. ....++++..++..+ ...+.+| .+|+..|..++...+....
T Consensus 433 f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s~~qqeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~~~~l~~ 510 (1426)
T PF14631_consen 433 FPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-SYCQQEVVGALVTHIGSGNSQEV-DAALDVLCELAEKNPSELQP 510 (1426)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhccHHHHHH
Confidence 44566667778899999999999999888877663 334567888877765 4445566 6889999888875433311
Q ss_pred HHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccC--hHhHHHhhHHHHHHhhcCCChHHHHHHHHh
Q 016814 112 IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVRLNIISK 176 (382)
Q Consensus 112 ~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~ 176 (382)
...++..+...+.+- ...+|.. ...++.++-.-+ .....+.+--++.+.+...++..+...+-.
T Consensus 511 fa~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIG 577 (1426)
T PF14631_consen 511 FATFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIG 577 (1426)
T ss_dssp THHHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHH
Confidence 012223333333332 3456655 444444441111 122446777788888888888776644333
No 343
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=77.23 E-value=3.3 Score=20.82 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=5.6
Q ss_pred HHHHHHHhhHHhh
Q 016814 169 VRLNIISKLDQVN 181 (382)
Q Consensus 169 vr~~~~~~l~~~~ 181 (382)
||..++.+|+.+.
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 3444444444443
No 344
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=76.31 E-value=11 Score=24.68 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHH-hChHHHH-hhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccC
Q 016814 248 RDAAANNLKRLAEE-FGPEWAM-QHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMG 302 (382)
Q Consensus 248 r~~a~~~l~~~~~~-~~~~~~~-~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~ 302 (382)
.++++.+++.+... .|.+.+. ..+++.+.+... ++.+.+|-++..+++.+++...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~ 61 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE 61 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH
Confidence 45677777777653 3444443 357788777766 4568899999999988876543
No 345
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=75.71 E-value=45 Score=27.71 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=52.6
Q ss_pred hHHHHHhhhcCc-chHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 271 ITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 271 l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
+.|.+....+++ ....|.+++..++.+.++-..+. ...+++|..++.....+..-+..|...+.+|..
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILL 197 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 445554444443 47799999999999998766652 357899999999998888899999999988864
No 346
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=75.04 E-value=28 Score=26.25 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc-cccChhhhhh
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA-PVMGSEITCS 308 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~-~~~~~~~~~~ 308 (382)
+.+...+..++.+++.+|++.|++++-.+-. +.. ...-+.+..++.|... |..-..+...-. ..+.. ....
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~l-~pY~d~L~~Lldd~~f--rdeL~~f~~~~~~~~I~~-ehR~ 87 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----PYL-TPYKDNLENLLDDKTF--RDELTTFNLSDESSVIEE-EHRP 87 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHH-HhHHHHHHHHcCcchH--HHHHHhhcccCCcCCCCH-HHHh
Confidence 5677788899999999999999999877532 111 1133455556665543 333322221111 11222 3567
Q ss_pred hhHHHHHhhc
Q 016814 309 RLLPVVINAS 318 (382)
Q Consensus 309 ~~l~~l~~~l 318 (382)
.++|.++..+
T Consensus 88 ~l~pvvlRIL 97 (141)
T PF07539_consen 88 ELMPVVLRIL 97 (141)
T ss_pred HHHHHHHHHH
Confidence 7788777654
No 347
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.68 E-value=1.2e+02 Score=32.15 Aligned_cols=214 Identities=12% Similarity=0.111 Sum_probs=120.4
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchhhH--hhhHHHHHHHHhcC---CCchHHHHHHHHhHHHHhhh----chhhhHHHH
Q 016814 162 LKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAED---RHWRVRLAIIEYIPLLASQL----GVGFFDDKL 232 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~--~~~llp~l~~~~~d---~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l 232 (382)
...+..+||....+++-.+.+..|...+ .+.++..+...... +.-.+-+....++..++.-+ +..-+ ..+
T Consensus 851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci-~~l 929 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI-LDL 929 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH-HHH
Confidence 4456688999999999888887775322 14455555544322 23344455555665554322 22211 233
Q ss_pred HHHHHHHh-ccchhHHHHHHHHHHHHHHHHhCh------H-----------------------HHHhhhHHHHHhhhcCc
Q 016814 233 GALCMQWL-QDKVYSIRDAAANNLKRLAEEFGP------E-----------------------WAMQHITPQVLEMINNP 282 (382)
Q Consensus 233 ~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~------~-----------------------~~~~~l~~~l~~~l~~~ 282 (382)
++.+..+. +..+..|-..|+..+..+...+.. + ..--.++..+.+...|+
T Consensus 930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen 930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence 44443332 334556666666555555443221 0 00012445566677788
Q ss_pred chHHHHHHHHHHHHhcccc----Chh----hhhhhhHHHHHhh----ccCCC-----ccHHHHHHHHHHHHhhhhhHH--
Q 016814 283 HYLYRMTILRAISLLAPVM----GSE----ITCSRLLPVVINA----SKDRV-----PNIKFNVAKVLQSLIPIVDQS-- 343 (382)
Q Consensus 283 ~~~~r~~a~~~l~~l~~~~----~~~----~~~~~~l~~l~~~----l~d~~-----~~vR~~a~~~l~~i~~~~~~~-- 343 (382)
...||..|++.+=++.... |.. -++..++|.+-.. .++.+ .+--..++-+++.|++-+...
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFK 1089 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8999999999888875443 433 2344444544311 01111 112344556666666655432
Q ss_pred ---------HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 344 ---------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 344 ---------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
..-..++..+..+..|..+++...|.++++.+.
T Consensus 1090 ~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1090 LLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 122677888888999999999999999988764
No 348
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=74.61 E-value=65 Score=29.01 Aligned_cols=261 Identities=13% Similarity=0.114 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHHHHH------HhhCHHHHHHhhhHhhhhhcCCCc--hHHHHHHHHHHHhhccccChHh----HHHhhH
Q 016814 88 EAEVRIAAAGKVTKFC------RILNPELAIQHILPCVKELSSDSS--QHVRSALASVIMGMAPLLGKDA----TIEQLL 155 (382)
Q Consensus 88 ~~~VR~~a~~~l~~l~------~~~~~~~~~~~il~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~----~~~~l~ 155 (382)
+.++-..|++.++.+. +.++.+... .++......+.+++ ..+-..+..++.. +.++... ..+.++
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~-~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~ 135 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFAS-FIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLL 135 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHH
Confidence 5677788888888764 334444221 23343344443332 2333333333332 2233222 223333
Q ss_pred HHHHHhhc-CCChHHHHHHHHhhHHhhhhhchhhH--hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHH
Q 016814 156 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 232 (382)
Q Consensus 156 ~~l~~~l~-d~~~~vr~~~~~~l~~~~~~~~~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 232 (382)
..+...-+ =++..+-...+..+..+....+..-. .+.-+|.+...+-+....+|..+......+...++++......
T Consensus 136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 33333332 23445555555555555544332111 1223455555555667778888777666666666654322211
Q ss_pred HH-HHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC-cchH----HHHHHHHHHHHhccc-cChhh
Q 016814 233 GA-LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYL----YRMTILRAISLLAPV-MGSEI 305 (382)
Q Consensus 233 ~~-~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~----~r~~a~~~l~~l~~~-~~~~~ 305 (382)
+. .+...+.+ . . +.+.+.+.+.+++.+ +++. +-......+ ... +..-.
T Consensus 216 ~~~~~~~~~~~-~-~--------------------~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL---~~~~~~~w~ 270 (372)
T PF12231_consen 216 VLEDLQRSLEN-G-K--------------------LIQLYCERLKEMIKSKDEYKLAMQIWSVVILLL---GSSRLDSWE 270 (372)
T ss_pred HHHHhcccccc-c-c--------------------HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHh---CCchhhccH
Confidence 11 11111111 1 1 222333444444444 1111 111111111 111 22224
Q ss_pred hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH------HHHhHHHHHHHhcCCCCc----cHHhHHHHHHHHH
Q 016814 306 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM------VEKTIRPCLVELTEDPDV----DVRFFATQAIQSI 375 (382)
Q Consensus 306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~------~~~~i~~~l~~l~~d~~~----~vr~~a~~al~~~ 375 (382)
+.+..+...-.+++++++.+|..|..+-..+......+. ..-...|....+-..... ++|..+...+..+
T Consensus 271 ~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l 350 (372)
T PF12231_consen 271 HLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL 350 (372)
T ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence 566667777778888888888888888877765443221 112333443333333333 5666666655544
Q ss_pred H
Q 016814 376 D 376 (382)
Q Consensus 376 ~ 376 (382)
.
T Consensus 351 l 351 (372)
T PF12231_consen 351 L 351 (372)
T ss_pred H
Confidence 3
No 349
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=74.59 E-value=25 Score=26.51 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=34.7
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHH
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 136 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~ 136 (382)
++-..+..++.+++++|++.|++|+...-. +.. ...-+.+..+++|. ..|.....
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~l-~pY~d~L~~Lldd~--~frdeL~~ 71 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD----PYL-TPYKDNLENLLDDK--TFRDELTT 71 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHH-HhHHHHHHHHcCcc--hHHHHHHh
Confidence 467777888899999999999999887633 111 11224455566664 34444433
No 350
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.38 E-value=4.7 Score=32.26 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=53.9
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHH
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 152 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 152 (382)
.++|.|..-+.+.+-..|-.|-+.+..+....+.. .+...++..++..+...+.+|...+++++..+....| ..-.
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~--~vG~ 191 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG--CVGA 191 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--ccch
Confidence 47888888887777777777777777776665543 3345566666777777777777777777766643222 1113
Q ss_pred hhHHHHHHhh
Q 016814 153 QLLPIFLSLL 162 (382)
Q Consensus 153 ~l~~~l~~~l 162 (382)
.++|++.+++
T Consensus 192 aLVPfYRQlL 201 (262)
T KOG3961|consen 192 ALVPFYRQLL 201 (262)
T ss_pred hhhhHHHHhh
Confidence 4455555443
No 351
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.80 E-value=1.3e+02 Score=32.24 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=64.3
Q ss_pred hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH--HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 307 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 307 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
+..+...++....|.+++.|..|+..+..++..+|..+ ...+.+|.|.++.+|.+.+|...+.+.+.++-.++|+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 44444555566677788999999999999999999875 4589999999999999999999999999999999886
No 352
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=71.06 E-value=55 Score=26.64 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=41.1
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC
Q 016814 74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 146 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 146 (382)
+.+++.+....++.+.-.|.+++-.... ...++.....+++....++.|+...|+.+.-.+|..++.+.+
T Consensus 117 ~~li~~~~a~~~~~~~w~rraaiv~~l~---~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~ 186 (222)
T COG4912 117 PDLIEEWAADAEEDNRWERRAAIVHQLV---YKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSN 186 (222)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHH---HhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhch
Confidence 4456665444444444444444333332 222332233577888888888888888888888888887443
No 353
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=69.74 E-value=1.2e+02 Score=29.94 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=52.5
Q ss_pred HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHh
Q 016814 151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 221 (382)
Q Consensus 151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~ 221 (382)
...++..+..+..|+-+.|+..+++.+..+...-+.+. ..++-.+.+-++|++.++-..+...|..+..
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE--~~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE--NNLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH--HHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 35677788888899999999999988887765443322 5688888888899998887777777766654
No 354
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=69.24 E-value=1.8e+02 Score=31.72 Aligned_cols=149 Identities=14% Similarity=0.117 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-hhhh
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-ITCS 308 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~ 308 (382)
+.++.+...++.++++.|+.-+......+...+. .+....++..++..+.+.+..--.+|+..+..++...+.. ....
T Consensus 434 ~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa 512 (1426)
T PF14631_consen 434 PSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFA 512 (1426)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4677777788899999999999998888887774 3456678888888776666555578999999998754433 1123
Q ss_pred hhHHHHHhhccCCC-ccHHHHHHHHHHHHhhhhh--HHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 309 RLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 309 ~~l~~l~~~l~d~~-~~vR~~a~~~l~~i~~~~~--~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
.++..++..+.+=+ .++|.- ...+..++-.-+ ...+...+.-.+.+.+..++...+....-+.-.++..++
T Consensus 513 ~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~la 586 (1426)
T PF14631_consen 513 TFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHLA 586 (1426)
T ss_dssp HHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Confidence 33444444444322 335533 444444432111 123445666667777777777776666555555555554
No 355
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=69.17 E-value=54 Score=26.22 Aligned_cols=104 Identities=14% Similarity=0.088 Sum_probs=49.0
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh-hHhhhHHHHHHHHhcCC-----CchHHHHHHHHhHHHHhhhchh
Q 016814 153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLGVG 226 (382)
Q Consensus 153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~-~~~~~llp~l~~~~~d~-----~~~vr~~~~~~l~~l~~~~~~~ 226 (382)
.++..+.+...+.-..||..|..++..+....... ...+ -.+.+......+ +|. .....+..+.+.+...
T Consensus 7 ~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~---~~~~~F~~l~~LL~~~ 82 (193)
T PF12612_consen 7 QIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWS---SSSEYFPRLVKLLDLP 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccC---CHHHHHHHHHHHhccH
Confidence 44444444555556677777777777766322110 0001 112333333222 132 2333344444444444
Q ss_pred hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814 227 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260 (382)
Q Consensus 227 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 260 (382)
.+...++.-+.......+..+...+..++-.++.
T Consensus 83 ~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 83 EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 4444444444444555556666666666666654
No 356
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=68.92 E-value=1.3e+02 Score=30.07 Aligned_cols=137 Identities=16% Similarity=0.091 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHH---hCCcccc----cchHHHHHHh
Q 016814 11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA---VGPEPTR----MDLVPAYVRL 83 (382)
Q Consensus 11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~---~~~~~~~----~~ll~~l~~~ 83 (382)
+.+|..--..+..+...... ...+.++|-+.-++-|+++..|.=|...+..+... +..+.+. ..+...+...
T Consensus 96 ~~l~~~F~~~f~~~~~~~~~-~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i 174 (727)
T PF12726_consen 96 EELRELFDAIFSSLQSKKPL-KLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI 174 (727)
T ss_pred HHHHHHHHHHHHHHhccCCc-cccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh
Confidence 44555555555555443221 12267888888888999999999999999988754 3333322 2233333333
Q ss_pred -cCCCcHHHHHHHHHHHHHHHHhhCHHHHHHh--------hhHhhhhhcCCCchHHHHHHHHHHHhhccccChH
Q 016814 84 -LRDNEAEVRIAAAGKVTKFCRILNPELAIQH--------ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 84 -l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~--------il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
-+..++..-..--..+..+.+.++.+.+.+. +...+...+.+.....-...++++..+.+.+|.+
T Consensus 175 ~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~ 248 (727)
T PF12726_consen 175 SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSD 248 (727)
T ss_pred ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHH
Confidence 1222344444466777788888888755433 2334445555553555567778888777666543
No 357
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=68.89 E-value=79 Score=27.58 Aligned_cols=19 Identities=0% Similarity=0.057 Sum_probs=8.9
Q ss_pred hhhccCCCHHHHHHHHHHH
Q 016814 42 VNFSQDKSWRVRYMVANQL 60 (382)
Q Consensus 42 ~~~~~d~~~~vR~~a~~~l 60 (382)
++.++..++..|......+
T Consensus 26 Q~~l~~~~~~~~~~i~~~l 44 (322)
T cd07920 26 QQKLEEATPEEKELIFDEI 44 (322)
T ss_pred HHHhccCCHHHHHHHHHHH
Confidence 3344444455555555543
No 358
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=68.20 E-value=80 Score=27.36 Aligned_cols=187 Identities=12% Similarity=0.059 Sum_probs=103.2
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-----HH--HHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc
Q 016814 74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-----LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 145 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~-~~~-----~~--~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 145 (382)
..+++.+++.+.+-+.+-|+-++.....+.+.- +.. .+ ...++..+.+.-.+ .++ .++.+=.-+.++.
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~---iaL~cg~mlrEci 153 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPE---IALTCGNMLRECI 153 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chH---HHHHHHHHHHHHH
Confidence 456788888888888888888888888876532 211 11 12345555554222 222 2222211222222
Q ss_pred ChHhH-----HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhhHh---hhH-HHHHHHHhcCCCchHHHHHH
Q 016814 146 GKDAT-----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLS---QSL-LPAIVELAEDRHWRVRLAII 213 (382)
Q Consensus 146 ~~~~~-----~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~---~~~~~---~~l-lp~l~~~~~d~~~~vr~~~~ 213 (382)
.-+.. .+.-+.-+...+.-+..++-..|++.+..+..... .+-+. ..+ ......++.+.|+-+|....
T Consensus 154 rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 154 RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 11111 11112223334455555666666666555433211 11111 122 23356677888998999988
Q ss_pred HHhHHHHhhhchhhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh
Q 016814 214 EYIPLLASQLGVGFF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 264 (382)
Q Consensus 214 ~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 264 (382)
..++.+...-+.... .+.-+.+++.+++|++..++-.|.+....++.+..+
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 888887543322111 134466788889999999999998888888765433
No 359
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=66.98 E-value=40 Score=26.63 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHHHHhccc-cChhhh--hhhhHHHHHhhccCCCccHHHHHHHHHHHHh
Q 016814 282 PHYLYRMTILRAISLLAPV-MGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 337 (382)
Q Consensus 282 ~~~~~r~~a~~~l~~l~~~-~~~~~~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 337 (382)
.+......++.|+..+... .|.+.+ ....++.+...+.+++..+|..+++.|+.++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3456667788888887653 443322 3567788888888889999999999888764
No 360
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.10 E-value=2.1e+02 Score=30.98 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=37.9
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 304 (382)
..|.+...|..|+..+..+.+..|..+ ...+.+|.+-+++.|.+..+...+...+.++-+.+|+.
T Consensus 1550 trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1550 TRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred hccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchh
Confidence 444456666666666666666665543 34556666666666666666555555555555555543
No 361
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=64.65 E-value=85 Score=26.36 Aligned_cols=80 Identities=20% Similarity=0.227 Sum_probs=46.5
Q ss_pred HHHHHHhcCCCc--HHHHHHHHHHHHHHHHhh--CHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHH
Q 016814 77 VPAYVRLLRDNE--AEVRIAAAGKVTKFCRIL--NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 152 (382)
Q Consensus 77 l~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~--~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 152 (382)
++.+.+++.|++ .-||.+|+.++..++..- ..+.+.+.+...+...++.....+-...+..+..+. ..
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~--------~~ 184 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLY--------PE 184 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcC--------HH
Confidence 556667777765 569999999999987653 455666566555655454443333333332222221 24
Q ss_pred hhHHHHHHhhcC
Q 016814 153 QLLPIFLSLLKD 164 (382)
Q Consensus 153 ~l~~~l~~~l~d 164 (382)
.++|.+.+...+
T Consensus 185 EL~~~I~~~f~~ 196 (249)
T PF06685_consen 185 ELLPEIRKAFED 196 (249)
T ss_pred HhHHHHHHHHHc
Confidence 555666655443
No 362
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=64.60 E-value=83 Score=26.25 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=27.9
Q ss_pred HhhHHHHHHhhcCCC--hHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc
Q 016814 152 EQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 202 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~--~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~ 202 (382)
+.++..+...+.++. +.+-.+++.++..+++.= ..+...+++.+..+-.
T Consensus 113 ~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~R--P~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 113 NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQR--PQFMSRILPALLSFNP 163 (239)
T ss_dssp HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhcCc
Confidence 445556666655543 566666667776666542 2333667777766644
No 363
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=62.30 E-value=1.1e+02 Score=26.75 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=8.1
Q ss_pred HhhhHhhhhhcCCCc
Q 016814 113 QHILPCVKELSSDSS 127 (382)
Q Consensus 113 ~~il~~l~~~~~d~~ 127 (382)
+.+.+.+.+++.|..
T Consensus 114 ~~l~~~~~~L~~d~~ 128 (322)
T cd07920 114 KELRGHVVELVKDQN 128 (322)
T ss_pred HHHHHCHHHHhhccc
Confidence 344555556666543
No 364
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=62.18 E-value=34 Score=24.03 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=34.9
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCC
Q 016814 268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR 321 (382)
Q Consensus 268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~ 321 (382)
.+.++..+...+.+-...+|.-+..++.-+.+.++.. ....++++.++.++.-.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 3445556666666667777777777777777776655 24556677666666544
No 365
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=61.81 E-value=51 Score=25.97 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=22.3
Q ss_pred hHHHHHHHHhHHHHhh-hchhhhH--HHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 016814 207 RVRLAIIEYIPLLASQ-LGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRL 258 (382)
Q Consensus 207 ~vr~~~~~~l~~l~~~-~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 258 (382)
.....++.++..+... .|-..+. +..+..+...+.+++..+|..+++.|+.+
T Consensus 131 ~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 131 DIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3445555555554431 1211111 23344444455555555555555555444
No 366
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=61.06 E-value=75 Score=24.53 Aligned_cols=97 Identities=12% Similarity=0.065 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHH--hChHHHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhccccCh---hhhhhhhHHHHHhhc
Q 016814 246 SIRDAAANNLKRLAEE--FGPEWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINAS 318 (382)
Q Consensus 246 ~vr~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l 318 (382)
++-.-++.++..+.+. .+.+.+...++..+..+.+.+ +..+-+.++..+..+..+-.. ....+.-++.++..+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 3344444555444442 223444455555555555533 356777888888887654322 122334477888999
Q ss_pred cCCCccHHHHHHHHHHHHhhhhhH
Q 016814 319 KDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 319 ~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
.+.++.++..++..+..+...-+.
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999999999999988888766554
No 367
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=60.57 E-value=44 Score=23.53 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhCCc--cc-ccchHHHHHHhc--CCCcHHHHHHHHHHHHHHHHhhCHH
Q 016814 53 RYMVANQLYELCEAVGPE--PT-RMDLVPAYVRLL--RDNEAEVRIAAAGKVTKFCRILNPE 109 (382)
Q Consensus 53 R~~a~~~l~~l~~~~~~~--~~-~~~ll~~l~~~l--~d~~~~VR~~a~~~l~~l~~~~~~~ 109 (382)
|...++.+++++-..... .. ...-+|.+++.+ .|.+|-+|+-|+.++..+++.....
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 455666666666432221 11 112366666644 4456889999999999987755443
No 368
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=59.84 E-value=1.9e+02 Score=28.72 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=51.2
Q ss_pred HhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 113 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 113 ~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
..++..+..+..|+-+.|+..+++.+..+...-+. ....++-.+.+-+.|++..+-..+...|..+...
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~ 371 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK 371 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence 45778888899999999999999998887653333 2456777888888888777776666666655443
No 369
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=58.38 E-value=65 Score=23.00 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=42.0
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814 269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 336 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i 336 (382)
..++..+.+.+....+..|..+++.+..++++++.. .+...+.+.+.......++.+|....+.+..+
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 446666666666666677888888888888777643 23333345555555555566666665555544
No 370
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=58.15 E-value=1.1e+02 Score=25.53 Aligned_cols=85 Identities=24% Similarity=0.264 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh-----------------------------hh---HHHHHHHHHHHh
Q 016814 193 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-----------------------------FF---DDKLGALCMQWL 240 (382)
Q Consensus 193 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----------------------------~~---~~~l~~~l~~~l 240 (382)
+-..+...+.+.++.+|..+++.+..+.-...+. .+ ...++..+...+
T Consensus 44 lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l 123 (239)
T PF11935_consen 44 LKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVL 123 (239)
T ss_dssp HHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 3344555566777788888888777665332110 00 134555566655
Q ss_pred ccch--hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh
Q 016814 241 QDKV--YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 279 (382)
Q Consensus 241 ~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l 279 (382)
.++. ..+-.+.+.++..+++.- + .+...+++.+.++-
T Consensus 124 ~~~~i~~~~~~a~insL~~Iak~R-P-~~~~~Il~~ll~~~ 162 (239)
T PF11935_consen 124 QSPHISSPLLTAIINSLSNIAKQR-P-QFMSRILPALLSFN 162 (239)
T ss_dssp C-TT--HHHHHHHHHHHHHHHHHS-G-GGHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHHHHHHh-h-HHHHHHHHHHHhcC
Confidence 5543 555566666666666543 1 23344555555443
No 371
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=56.67 E-value=82 Score=23.61 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=64.6
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH
Q 016814 35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 110 (382)
Q Consensus 35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 110 (382)
.++-.++.+.-.-.+.+.++.....|++.+- ++.++ .-.+++.|+..+..++....+.++-.|-+ .|....
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY--DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCN---lC~d~~ 90 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY--DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCN---LCLDKT 90 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHh---hccChH
Confidence 3455555566566666777777777666552 22221 12478999999998888777765554444 443321
Q ss_pred -----HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc
Q 016814 111 -----AIQHILPCVKELSSDSSQHVRSALASVIMGMA 142 (382)
Q Consensus 111 -----~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~ 142 (382)
....=+|.+...+.|+...+-..++..+..+.
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 11233567777788888888788877777665
No 372
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=54.66 E-value=42 Score=23.61 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=42.9
Q ss_pred hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH---HHHhHHHHHHHhcCC
Q 016814 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVELTED 359 (382)
Q Consensus 305 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~l~~d 359 (382)
++.+.++.++...+.+-.+.||.-+.+.|..+.+.++... ...++++.+..++..
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 4667778888888899999999999999999999988762 235666766666543
No 373
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=52.94 E-value=1.4e+02 Score=25.20 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc-ccChh
Q 016814 231 KLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSE 304 (382)
Q Consensus 231 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~-~~~~~ 304 (382)
.+.|.+...-+. +...+|..++..+|.+++.-.++. ....++|.++..++..+.-.+..|...+.++.. ..|-+
T Consensus 95 yLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~ 174 (262)
T PF04078_consen 95 YLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLN 174 (262)
T ss_dssp GGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHH
T ss_pred hehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHH
Confidence 456666554444 346789999999999998544442 245789999998888888888888888888642 22211
Q ss_pred ---------hhhhhhHH-HHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH------hcCCCCccHHhHH
Q 016814 305 ---------ITCSRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE------LTEDPDVDVRFFA 368 (382)
Q Consensus 305 ---------~~~~~~l~-~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~------l~~d~~~~vr~~a 368 (382)
.....++. .+..+.+++++.+=...+++...+.............+|...+ ++. .|+.++..-
T Consensus 175 yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP~~Lrd~~f~~~l~-~D~~~k~~l 253 (262)
T PF04078_consen 175 YICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLPDQLRDGTFSNILK-DDPSTKRWL 253 (262)
T ss_dssp HHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-GGGTSSTTTTGGC-S-HHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCcHHHhcHHHHHHHh-cCHHHHHHH
Confidence 11222332 3334456666655566666666666554444333344443322 111 255555555
Q ss_pred HHHHHH
Q 016814 369 TQAIQS 374 (382)
Q Consensus 369 ~~al~~ 374 (382)
.+-+..
T Consensus 254 ~qLl~n 259 (262)
T PF04078_consen 254 QQLLSN 259 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 374
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.70 E-value=72 Score=28.29 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=36.4
Q ss_pred HHHHhhhcCcchHHHHHHHHHHHHhccccC-hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814 273 PQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 336 (382)
Q Consensus 273 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i 336 (382)
-.++.+.++++..-|.-++..++.....-+ ...-...+-+.+..++.|.++.+|...+.+|++.
T Consensus 10 ~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 10 QDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 344555566666666555555555443333 2234455556666666666666666666666654
No 375
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=51.81 E-value=2.5e+02 Score=27.73 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=69.2
Q ss_pred CcchHHHHHHHHHHHHhccccCh-------hh-hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH-HHHhHHH
Q 016814 281 NPHYLYRMTILRAISLLAPVMGS-------EI-TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM-VEKTIRP 351 (382)
Q Consensus 281 ~~~~~~r~~a~~~l~~l~~~~~~-------~~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~-~~~~i~~ 351 (382)
..+..+-++++.++..+.-..+. .. -.++.+|.+..++..++..|..+++.+|..+.....+.. +..+.+|
T Consensus 530 s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~ 609 (717)
T KOG1048|consen 530 SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIP 609 (717)
T ss_pred hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHH
Confidence 44577888899999888643321 12 356789999999999999999999999999988776653 4568888
Q ss_pred HHHHhcCCCC------ccHHhHHHHHHHHHH
Q 016814 352 CLVELTEDPD------VDVRFFATQAIQSID 376 (382)
Q Consensus 352 ~l~~l~~d~~------~~vr~~a~~al~~~~ 376 (382)
.|...+.+.. +++-..++..+..+.
T Consensus 610 ~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 610 DLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred HHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 8888776643 355555555555444
No 376
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=50.83 E-value=48 Score=23.94 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=21.9
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCR 104 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~ 104 (382)
.++.++..+.|+++.|+.+|++.|...+.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 57777777888888888888777777654
No 377
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=49.60 E-value=86 Score=25.57 Aligned_cols=87 Identities=15% Similarity=0.019 Sum_probs=58.5
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC
Q 016814 87 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF 166 (382)
Q Consensus 87 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 166 (382)
++|.|-...+..+.. +. ..+.+++.+....++.+...|.+++-..-..++. ......+++++...++|+.
T Consensus 98 nnW~vvD~la~~~V~-~~------~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~---~~~~~~if~i~E~~l~d~e 167 (222)
T COG4912 98 NNWAVVDTLANHFVG-IP------LWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKK---TLDLLEIFEIIELLLGDKE 167 (222)
T ss_pred ccHHHHHHHHHHhhc-cc------cCHHHHHHHHhccccchHHHHHHHHHHHHHHhcC---ccchhHHHHHHHHHccChH
Confidence 357777666655544 11 1234566665556666666666665544444432 2223479999999999999
Q ss_pred hHHHHHHHHhhHHhhhh
Q 016814 167 PDVRLNIISKLDQVNQV 183 (382)
Q Consensus 167 ~~vr~~~~~~l~~~~~~ 183 (382)
.-|+.+.-.+|.+++..
T Consensus 168 ~fV~KAigWaLrq~~k~ 184 (222)
T COG4912 168 FFVQKAIGWALRQIGKH 184 (222)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999883
No 378
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=49.04 E-value=68 Score=22.58 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhccCh--hhh-hhhhhhhhhhhc--cCCCHHHHHHHHHHHHHHHHH
Q 016814 13 VRLLAVEGCAALGKLLEP--QDC-VAHILPVIVNFS--QDKSWRVRYMVANQLYELCEA 66 (382)
Q Consensus 13 vR~~a~~~l~~l~~~~~~--~~~-~~~ll~~l~~~~--~d~~~~vR~~a~~~l~~l~~~ 66 (382)
.|...++.++.++-.... +.+ .-.-+|.+++.+ .|.+|.+|+-++-++-.+++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~ 60 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG 60 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC
Confidence 366777788887765432 111 222467777665 477999999999999999864
No 379
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.18 E-value=2.5e+02 Score=26.13 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=62.9
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHH
Q 016814 153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 232 (382)
Q Consensus 153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 232 (382)
.+..++.++-.+..+.+--...++|..++.+-..+ . ......|...+...+..+|..+++.+..+.-. ...|...+
T Consensus 7 kl~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee-~-~~~~~~L~~~~~~~h~~vR~l~lqii~elF~r--s~~FR~li 82 (661)
T KOG2374|consen 7 KLIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE-V-RLSSQTLMELMRHNHSQVRYLTLQIIDELFMR--SKLFRTLI 82 (661)
T ss_pred HHHHHHHHHhhcCCcccChHHHHHHHHHHhccHHH-H-HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 34455555555555555555566666666543332 2 44555666666777788888888888776432 22222222
Q ss_pred HHHHHHHh----c-cc----------hhHHHHHHHHHHHHHHHHhChH
Q 016814 233 GALCMQWL----Q-DK----------VYSIRDAAANNLKRLAEEFGPE 265 (382)
Q Consensus 233 ~~~l~~~l----~-d~----------~~~vr~~a~~~l~~~~~~~~~~ 265 (382)
+.-+..+| . ++ -...|..|+..+..+-+.+|..
T Consensus 83 i~n~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~~ 130 (661)
T KOG2374|consen 83 IENLDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGFH 130 (661)
T ss_pred HhCHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 22222221 1 11 2357999999999988887753
No 380
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.02 E-value=2.7e+02 Score=26.48 Aligned_cols=72 Identities=10% Similarity=-0.031 Sum_probs=46.1
Q ss_pred hchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814 184 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 259 (382)
Q Consensus 184 ~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 259 (382)
+|.+--.+.++.++-..+-=.++.+|..+--+++.+...- |. -.++..+.+...|.+-+|--.++-++|-+.
T Consensus 633 mGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~Sn-PQ---m~vfDtL~r~shd~dl~v~~ntIfamGLiG 704 (881)
T COG5110 633 MGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSN-PQ---MNVFDTLERSSHDGDLNVIINTIFAMGLIG 704 (881)
T ss_pred hcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCC-cc---hHHHHHHHHhccccchhHHHHHHHHhhccc
Confidence 4544444555666666655566777777766666554321 11 246777888888888888888877777654
No 381
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=45.26 E-value=4e+02 Score=28.24 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=44.8
Q ss_pred hhHhhhhhcCCCchHHHHHHHHHHHhhccccC-hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 016814 115 ILPCVKELSSDSSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 181 (382)
Q Consensus 115 il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~ 181 (382)
+++....-+-..++.|-.....++..+...-+ .......++.+..-.+.|++.++|..+++-|..+-
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le 571 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALE 571 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 44545554555667777777777776653222 11224567777777888999999999998887664
No 382
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=45.05 E-value=4.2e+02 Score=28.46 Aligned_cols=289 Identities=12% Similarity=0.106 Sum_probs=131.9
Q ss_pred HHHHHHHHHhccChhhhhhhhhhhhhhhc-cCCCHHHHHHHHHHHH-HHHH-HhCCcccccchHHHHHHhc-CCCcHHHH
Q 016814 17 AVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLY-ELCE-AVGPEPTRMDLVPAYVRLL-RDNEAEVR 92 (382)
Q Consensus 17 a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~d~~~~vR~~a~~~l~-~l~~-~~~~~~~~~~ll~~l~~~l-~d~~~~VR 92 (382)
...++..+....+.....+..+..+.... .|....-|++.+-.+. .+.. ...... ...++..+-+.+ ..+..+.|
T Consensus 871 ~~k~~t~lI~~~~s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~~r~i~~~e-L~~imd~v~e~~v~~~~~~~r 949 (1364)
T KOG1823|consen 871 SFKGFTALIAQVGSVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKALVSRKIMLPE-LYEIMDKVRETMVRNHSKEIR 949 (1364)
T ss_pred HHHHHHHHHHHhcceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHhcccchHH
Confidence 33444444444444444455555555544 3444445555554433 2221 110011 122444444333 23345556
Q ss_pred HHHHHHHHHHHHhhCH-HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHH
Q 016814 93 IAAAGKVTKFCRILNP-ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL 171 (382)
Q Consensus 93 ~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 171 (382)
..+-+.+..+.-.-+. +...+..+..+..-.......||...... . +.....++|...-.++|..+.+|.
T Consensus 950 ~qcre~~~~~~~s~s~~~k~~~~~V~~l~~~~esg~esvr~~~all-~--------e~~~~ffIal~~~~~nDd~~~~r~ 1020 (1364)
T KOG1823|consen 950 LQCREVFYSFLGSKSKLEKQMEFMVDNLLYEVESGRESVRFSPALL-F--------EILSNFFIALVLVKINDDEPVCRE 1020 (1364)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhhcccchhcccHHHH-H--------HHhhccchhhcccccccchHHHHH
Confidence 6655555444331111 12223334444444444555566111111 1 111234445555556787788888
Q ss_pred HHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH---------------HHHHHHH
Q 016814 172 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---------------DKLGALC 236 (382)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---------------~~l~~~l 236 (382)
.+...+..+......+.+ +-+...+..-.+-..-.-|...+...+......|-+... ...-|..
T Consensus 1021 ma~~~i~~~~~~~d~e~~-~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~e~~~~~~~~~~~lek~~~~~~s~~~~ 1099 (1364)
T KOG1823|consen 1021 MASMLIKVLYDKEDNELF-NLLERLLHEWVGVHKRHKRFILVGATGKAEESIGFELTIQLFVLLSVLEKEIIVEVSDPIE 1099 (1364)
T ss_pred HHHHHHHHHhCHhhhHHH-hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhhccceeeeecccccccHHH
Confidence 777776665544433333 222222222221111112222344455444444433211 1112222
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHH
Q 016814 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVI 315 (382)
Q Consensus 237 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~ 315 (382)
.+...+..+.+............+..|. +.+...+...+..+...+|.+++..++.+....+.. .....+.|.++
T Consensus 1100 ~~~~~~~~~~~lfs~lt~~t~~ikk~~f----~ki~~~v~~~~l~~~~~v~~s~~~lf~~l~a~~~~~e~~~~~i~~~ll 1175 (1364)
T KOG1823|consen 1100 AETEEVLFDKVLFSWLTLVTENIKKGGF----SKIWSRVVGLLLMPHSWVRLSRAQLFGFLFAISDVSELRLRTIIPLLL 1175 (1364)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHhCchHHHHHHHHHHHHHHHhcccHHHHHHHHhHHHHH
Confidence 2333333444444444444444443332 345566666666777778888888888887766654 33445667777
Q ss_pred hhccC
Q 016814 316 NASKD 320 (382)
Q Consensus 316 ~~l~d 320 (382)
..+.-
T Consensus 1176 ~~L~~ 1180 (1364)
T KOG1823|consen 1176 AHLDY 1180 (1364)
T ss_pred HhCCC
Confidence 66654
No 383
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=44.87 E-value=1.4e+02 Score=23.24 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=24.9
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 226 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 226 (382)
..++|.+..++.++.......++..+..+.+.+++.
T Consensus 68 ~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~ 103 (164)
T PF13925_consen 68 VDLLPLIEELLQSKYESYISVALEMLRSILKKFGPV 103 (164)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777655543
No 384
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=44.78 E-value=57 Score=23.54 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 016814 228 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 261 (382)
Q Consensus 228 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 261 (382)
+....++.+.+-+.|++.+|...|++.+...+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4456788888889999999999999988887753
No 385
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=43.26 E-value=1e+02 Score=21.09 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814 285 LYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 285 ~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 340 (382)
..|.+++..++.++..++-+ .+...++..|....+| ...++..+-+++..+-..-
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 46788888999888776643 4666777777777776 5668888888888887644
No 386
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=43.25 E-value=39 Score=22.08 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=28.2
Q ss_pred hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814 307 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 307 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 341 (382)
..+-++.++.+..+.++.-|..|+++|+.|....+
T Consensus 37 aGYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 37 AGYTIQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred CCcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 35667888888889999999999999998876543
No 387
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=42.27 E-value=1.6e+02 Score=22.78 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=43.7
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHh-hccCCC--ccHHHHHHHHHHHHhh
Q 016814 269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVIN-ASKDRV--PNIKFNVAKVLQSLIP 338 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~-~l~d~~--~~vR~~a~~~l~~i~~ 338 (382)
..+.+.+...+.+++..+=..++..+..+...++.. ...+.+++.++. .+..++ ...|..+++++..+..
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 456666666666666666677777777777665543 223455555544 554443 3577778888887765
No 388
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=41.61 E-value=1.6e+02 Score=22.72 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHh-hhcCcc--hHHHHHHHHHHHHhcc
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLE-MINNPH--YLYRMTILRAISLLAP 299 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~-~l~~~~--~~~r~~a~~~l~~l~~ 299 (382)
+.+.+.+.+.+..++..+-..++..+..+...++... -.+.+++.+.. .+..++ ...|..+++++..+.+
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 5677777777776778888888888888887765421 12445555555 444333 4688999999988874
No 389
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.19 E-value=2.1e+02 Score=25.55 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=14.2
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHH
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPL 218 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~ 218 (382)
+.+-+.+..++.|.+..+|..++.+|.+
T Consensus 46 ~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 46 RQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 3444455555555555555555555544
No 390
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=40.24 E-value=2.1e+02 Score=23.50 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=43.9
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHHhhhHhhhh-hcCCCchHHHHHHHHHHHhhccccChH
Q 016814 80 YVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
+.+.+.+++..+|..|++.+......-+. +.-...+..-+.- +-....|.+++..+..++.+...+...
T Consensus 5 ~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 5 FAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 34555677888999999988887765432 2112233333332 224556788888888888888777654
No 391
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=39.77 E-value=4e+02 Score=26.70 Aligned_cols=105 Identities=7% Similarity=-0.053 Sum_probs=59.3
Q ss_pred hccCCchHHHHHHHHHHHHHHhc---cChhhhhh----hhhhhhhhh-ccCCCHHHHHHHHHHHHHHHHHhCCccccc--
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKL---LEPQDCVA----HILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRM-- 74 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~---~~~~~~~~----~ll~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~-- 74 (382)
++-|+++.+|.-|...+..+... .+.+.+.. .+...+... ....++..=...=..+..+.+.++.+....
T Consensus 128 ~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l 207 (727)
T PF12726_consen 128 FLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLLDKEQITHSL 207 (727)
T ss_pred hhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 45577999999999999998775 44444432 333333333 112222222223344444555554432211
Q ss_pred ------chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 016814 75 ------DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 109 (382)
Q Consensus 75 ------~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 109 (382)
.+...+.+-+.+.....-...++++..+.+..+.+
T Consensus 208 ~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~ 248 (727)
T PF12726_consen 208 RALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSD 248 (727)
T ss_pred hccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHH
Confidence 14556666666664445566678888888877655
No 392
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=39.75 E-value=4.7e+02 Score=27.42 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=40.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCc--hHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh
Q 016814 85 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS--QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 162 (382)
Q Consensus 85 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 162 (382)
.|.+..-+..|++.+..+-...+. ..|...+.|+. +.+|..|+.+|...+.....=.-.+.++.++.+..
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~s~--------~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~f 724 (1180)
T KOG1932|consen 653 QDRDVVAQMEAIESLEALPSTASR--------SALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKF 724 (1180)
T ss_pred hcccHHHHHHHHHHHHcCCcchhH--------HHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHh
Confidence 555555565666665544222211 44555555554 68999999999988754311112356677776653
No 393
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.46 E-value=1.3e+02 Score=29.33 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=27.2
Q ss_pred chHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh
Q 016814 206 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 264 (382)
Q Consensus 206 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 264 (382)
..|+..++..+....+.++-+.+. +++|.+-.+|.+.-.+-+...+..+-+++..+|.
T Consensus 690 ~sV~ADvL~Iltek~eiLtLDl~t-~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt 747 (825)
T KOG0267|consen 690 NSVQADVLNILTEKIEILTLDLCT-QLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGT 747 (825)
T ss_pred hhHHHHHHHHHhhhhhHhhHHHHH-HHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhh
Confidence 344444444444444444444332 4555555555554444444444444444444443
No 394
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.73 E-value=2.8e+02 Score=24.58 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=77.9
Q ss_pred HHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHHHH-----hhhHHHHHhhhc--CcchHHHHHHHHHHHHhccccC--
Q 016814 233 GALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAM-----QHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMG-- 302 (382)
Q Consensus 233 ~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~-----~~l~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~-- 302 (382)
+..+..++.| .+..+|..+=.++..+-...|.+... ..-.+.+..+.. .+++.+-+.++.+++.++-..+
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 4455666777 56777866666666555555654322 223333333321 2345566666666666652221
Q ss_pred -hhhhhhhhHHHHHhhcc-CCC-ccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 303 -SEITCSRLLPVVINASK-DRV-PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 303 -~~~~~~~~l~~l~~~l~-d~~-~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
...+..-.-...++.++ .|. ..|+..++..+..+...-... .+...-...|.......++.++..|-.|+..++-
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 11111111222233332 332 348889999999887654432 2233334455555666778888888888876653
No 395
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=38.36 E-value=4.9e+02 Score=27.24 Aligned_cols=78 Identities=14% Similarity=0.016 Sum_probs=52.7
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 81 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 81 (382)
+..|.++ .+.+|..++..+..--........+.+.+..+...+.+.-..+|.+...+++.+. .++..-...++..+.
T Consensus 79 f~klas~-l~~~r~~aa~~Ll~~lq~~~~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~--~~kai~a~~vL~~i~ 155 (1129)
T KOG1926|consen 79 FTKLASS-LRPVRLAAAFQLLADLQELRDAEELSYVLNRLIRGLSSDRESARLGFSLILTEVL--RPKAIEATSVLSTIL 155 (1129)
T ss_pred HHHHHhh-cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh--ccccchHHHHHHHHH
Confidence 3445544 7889999888877766666566667777777777667777789999999988877 333222223555555
Q ss_pred H
Q 016814 82 R 82 (382)
Q Consensus 82 ~ 82 (382)
+
T Consensus 156 ~ 156 (1129)
T KOG1926|consen 156 Q 156 (1129)
T ss_pred H
Confidence 4
No 396
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=37.10 E-value=3.9e+02 Score=25.74 Aligned_cols=242 Identities=15% Similarity=0.225 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc----cccChHhHH--HhhHHHHHHh
Q 016814 91 VRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMA----PLLGKDATI--EQLLPIFLSL 161 (382)
Q Consensus 91 VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~----~~~~~~~~~--~~l~~~l~~~ 161 (382)
+|.+-.+..+.+...++.. .+.+.++..+.+..++.+ ..+......+..+- +..+.+.+. -+++.-+.++
T Consensus 59 ~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~~~~~~~~-~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~ 137 (552)
T PF14222_consen 59 LRLANWDLFAELLGVLSEIRFVSVSDRFIAELEKLRKDSN-DAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKF 137 (552)
T ss_pred hHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhcccCC-chHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHH
Confidence 4555555555554444333 334556666666665433 55555555555542 222333322 2444445555
Q ss_pred hcCC--ChHHHHHHHHhhHHhhhhhc----h----hh---HhhhHHHHHHHHhcC-CCchHHHHHHHHhHHHHhhhchhh
Q 016814 162 LKDE--FPDVRLNIISKLDQVNQVIG----I----DL---LSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF 227 (382)
Q Consensus 162 l~d~--~~~vr~~~~~~l~~~~~~~~----~----~~---~~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~ 227 (382)
..+. ..+++.+.+..+..+..=+. . .. +.+.+.|...++... ++|. .+......+...-+++.
T Consensus 138 f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~---~afPL~t~lLCvS~~e~ 214 (552)
T PF14222_consen 138 FLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWN---VAFPLVTTLLCVSPKEF 214 (552)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhh---hHHHHHHHHHhcCcHHH
Confidence 4443 56688888888877643211 1 11 224556666666543 3443 34444444455456777
Q ss_pred hHHHHHH-HHHH---HhccchhHHHHHHHHHHHHHHHHhC----hH---HHH---hhhHHHHHhhhcCcchHHHH-HHHH
Q 016814 228 FDDKLGA-LCMQ---WLQDKVYSIRDAAANNLKRLAEEFG----PE---WAM---QHITPQVLEMINNPHYLYRM-TILR 292 (382)
Q Consensus 228 ~~~~l~~-~l~~---~l~d~~~~vr~~a~~~l~~~~~~~~----~~---~~~---~~l~~~l~~~l~~~~~~~r~-~a~~ 292 (382)
|.++..+ .+.. -++|. ..|..++.++.+++=.+= .| ... +.++..++.. +.++|-.+. .-+.
T Consensus 215 F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~-~kk~~i~~D~~~~~ 291 (552)
T PF14222_consen 215 FLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPK-GKKGWIPRDPEPLN 291 (552)
T ss_pred HHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccC-CCCcccCCChhhhh
Confidence 7776663 5543 35665 788888888888764321 11 122 2233333321 123455555 5555
Q ss_pred HHHHhccccChh---hh-hhhhHHHHHhhcc-----CCCccHHHHHHHHHHHHhhh
Q 016814 293 AISLLAPVMGSE---IT-CSRLLPVVINASK-----DRVPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 293 ~l~~l~~~~~~~---~~-~~~~l~~l~~~l~-----d~~~~vR~~a~~~l~~i~~~ 339 (382)
.+..+...+|.. +. .+.++|.+-.... .-+|+--..+++++-.+...
T Consensus 292 ~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~ 347 (552)
T PF14222_consen 292 PLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSD 347 (552)
T ss_pred hHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHh
Confidence 666666555543 23 3334444433332 12355555566666666554
No 397
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.07 E-value=6e+02 Score=27.88 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=57.0
Q ss_pred HHHHHHH---HhcCCCchHHHHHHHHhHHHHhhhchhhhH---H----HHHHHHHHHhcc-----chhHHHHHHHHHHHH
Q 016814 193 LLPAIVE---LAEDRHWRVRLAIIEYIPLLASQLGVGFFD---D----KLGALCMQWLQD-----KVYSIRDAAANNLKR 257 (382)
Q Consensus 193 llp~l~~---~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~----~l~~~l~~~l~d-----~~~~vr~~a~~~l~~ 257 (382)
..|.+.. ...+....+|..+++.+-.+....|..+-. + .++|++...-.+ .+.+......+++..
T Consensus 1172 wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~ 1251 (1514)
T KOG0929|consen 1172 WFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQA 1251 (1514)
T ss_pred eehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHH
Confidence 3444443 334666788888888887777666643321 1 222322221111 222455555555555
Q ss_pred HHHHhCh-----HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC
Q 016814 258 LAEEFGP-----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302 (382)
Q Consensus 258 ~~~~~~~-----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~ 302 (382)
++..+.. ....+.++..+......++...-.....|+..+....|
T Consensus 1252 ~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~ 1301 (1514)
T KOG0929|consen 1252 LVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNG 1301 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcc
Confidence 5543321 12233344444455566776666677777777765544
No 398
>COG2733 Predicted membrane protein [Function unknown]
Probab=36.71 E-value=3.2e+02 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=17.7
Q ss_pred HhhhcCcchHHHHHHHHHHHHhccccC
Q 016814 276 LEMINNPHYLYRMTILRAISLLAPVMG 302 (382)
Q Consensus 276 ~~~l~~~~~~~r~~a~~~l~~l~~~~~ 302 (382)
.+-+++++..+|.....++..+++.+.
T Consensus 307 ~~D~e~~~s~l~~~l~~~~~~~Ge~l~ 333 (415)
T COG2733 307 KEDYESEDSMLRKRLARAVQSVGEELI 333 (415)
T ss_pred HhcccCchhHHHHHHHHHHHHHHHHHh
Confidence 334456777777777777777766543
No 399
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=36.51 E-value=34 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=15.6
Q ss_pred cchhccCCchHHHHHHHHHHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAA 23 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~ 23 (382)
|..|++|++++||..|+..+..
T Consensus 52 Ll~LL~hpn~~VRl~AA~~~L~ 73 (106)
T PF09450_consen 52 LLPLLKHPNMQVRLWAAAHTLR 73 (106)
T ss_dssp GGGGGGSS-HHHHHHHHHTTTT
T ss_pred HHHHHcCCChhHHHHHHHHHHH
Confidence 4578899999999888755433
No 400
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=35.73 E-value=5.5e+02 Score=27.10 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHh-------ChHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhccccC--hhhhhhhhHHHHHhhc
Q 016814 249 DAAANNLKRLAEEF-------GPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMG--SEITCSRLLPVVINAS 318 (382)
Q Consensus 249 ~~a~~~l~~~~~~~-------~~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~l 318 (382)
+.++.++..+++.. |.+...-..++.+...+.. ++..+..-++..+..+..+-. .+-....++..++.++
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence 44566666666543 3333222344555555543 446777788887777653322 2223344677788888
Q ss_pred cCCCccHHHHHHHHHHHHhhhhh--HHHHHH-hHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 319 KDRVPNIKFNVAKVLQSLIPIVD--QSMVEK-TIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 319 ~d~~~~vR~~a~~~l~~i~~~~~--~~~~~~-~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
.+ -|..|..++..|-.+...-. .+-... .+...+.-++.....++|..|++.++.+.
T Consensus 1823 HS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1823 HS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred hc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 66 58899999999887765322 111111 22333334567778899999998888764
No 401
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=35.48 E-value=2.8e+02 Score=23.54 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=39.0
Q ss_pred cchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhhhhhcCCCchHHHHHHHHHHHhh
Q 016814 74 MDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGM 141 (382)
Q Consensus 74 ~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~~~d~~~~vr~~a~~~l~~l 141 (382)
.++.|++....+.. -..+|-+++..++.+.+.-+++.+ ..+++|.....++..+...+..|...+..+
T Consensus 94 lyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 94 LYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp GGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35777774443332 256899999999999886665522 235667776666655555555555555444
No 402
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=35.45 E-value=2e+02 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=17.2
Q ss_pred HHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814 312 PVVINASKDRVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 312 ~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 341 (382)
..++..|.+.+..+...|+++|....-.++
T Consensus 97 ~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 97 QPLIDLLKSDDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp HHHHHGG--G-TTTHHHHHHHHHT--TTCC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhhHHHHh
Confidence 356677766667777788887777665554
No 403
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=34.20 E-value=2.2e+02 Score=22.04 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHhhccccCh---HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch
Q 016814 127 SQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 186 (382)
Q Consensus 127 ~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~ 186 (382)
+..+-..+...+..+...-.. ....+--++.+...+.+.+++++..++.-+.++....+.
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 355666666666666542221 111133445556666667777777777766666544443
No 404
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=32.99 E-value=61 Score=24.83 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=19.0
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccCh
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEP 30 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~ 30 (382)
..|..|..|.|+.+++..++.+++..+.
T Consensus 83 e~L~~D~rPSVKLA~iSLlSiIiek~~~ 110 (180)
T PHA02855 83 ESLNNDNRPSVKLAIISLISMIAEKKGY 110 (180)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 4566777777777777777777665543
No 405
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=32.82 E-value=1.8e+02 Score=22.40 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=18.6
Q ss_pred HhccchhHHHHHHHHHHHHHHHHhCh
Q 016814 239 WLQDKVYSIRDAAANNLKRLAEEFGP 264 (382)
Q Consensus 239 ~l~d~~~~vr~~a~~~l~~~~~~~~~ 264 (382)
++.|..|.|+.+++..++.+++..|.
T Consensus 85 L~~D~rPSVKLA~iSLlSiIiek~~~ 110 (180)
T PHA02855 85 LNNDNRPSVKLAIISLISMIAEKKGY 110 (180)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 34677777777777777777776664
No 406
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=32.01 E-value=2.6e+02 Score=23.64 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=59.8
Q ss_pred CCchHHHHHHHHHHHHHHhccCh-hhh---hh-hhhhhhhhhccCC---CHHHHHHHHHHHHHHHHHhCCcc----cccc
Q 016814 8 NDQDSVRLLAVEGCAALGKLLEP-QDC---VA-HILPVIVNFSQDK---SWRVRYMVANQLYELCEAVGPEP----TRMD 75 (382)
Q Consensus 8 d~~~~vR~~a~~~l~~l~~~~~~-~~~---~~-~ll~~l~~~~~d~---~~~vR~~a~~~l~~l~~~~~~~~----~~~~ 75 (382)
+..+..+..+++++..+-.+-.. ... .. .++..+....... +..+|.+++..+-+++-...... ...+
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 35677788888888887664322 111 12 3444444444443 77889888888888876554322 2234
Q ss_pred hHHHHHHhc-CC-CcHHHHHHHHHHHHHHH
Q 016814 76 LVPAYVRLL-RD-NEAEVRIAAAGKVTKFC 103 (382)
Q Consensus 76 ll~~l~~~l-~d-~~~~VR~~a~~~l~~l~ 103 (382)
++..+.+.+ .. .++++...++-++|++.
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 667777633 22 46777777888888886
No 407
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.46 E-value=5.7e+02 Score=25.97 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=66.4
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Q 016814 34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 113 (382)
Q Consensus 34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~ 113 (382)
....+..+-+.+....+...-.++..+.++-+..+-..+.+..+=.+...+.+.+.-.|-+..+...+-.+...+-....
T Consensus 22 ~~a~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~a 101 (970)
T KOG1988|consen 22 VNAVLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGA 101 (970)
T ss_pred hhHHHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhh
Confidence 33444455555554444444555555555444333332223233334445566677788877777775444444433334
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 147 (382)
+++..+.......++.-|..+...++.+...+++
T Consensus 102 E~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE 135 (970)
T KOG1988|consen 102 EFLRRIFYVDHSNDPVARALLLRILGQLSALIPE 135 (970)
T ss_pred hhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc
Confidence 5666666666777788899999999988877764
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.29 E-value=8.8e+02 Score=28.12 Aligned_cols=199 Identities=18% Similarity=0.154 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC---CcHHHHHHHHHHHHHHHHhhCHH---HHHHh-hhHhhhhhcC
Q 016814 52 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD---NEAEVRIAAAGKVTKFCRILNPE---LAIQH-ILPCVKELSS 124 (382)
Q Consensus 52 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d---~~~~VR~~a~~~l~~l~~~~~~~---~~~~~-il~~l~~~~~ 124 (382)
-...+...+..+.+..|.... ....|.+.-++.. ...+.|..+.++...+....... .+... +++.+..++.
T Consensus 896 ~k~~tl~~I~~~i~~~g~~~v-~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~l~ 974 (2382)
T KOG0890|consen 896 QKKKTLKGIKKLISFMGSKAV-STRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILNDNEKSDILDRNIIAALFPLLE 974 (2382)
T ss_pred HHHHHHHhHHHHHhhccHHHH-HHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhc
Confidence 346777778888777775443 2233333333332 34667777777777776655433 11112 4555555554
Q ss_pred CCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCC
Q 016814 125 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 204 (382)
Q Consensus 125 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~ 204 (382)
+.....+......+..- .......+.+.+. ++-+ .++ ..........+.....+.-....++.+.....++
T Consensus 975 ~~~~~~v~~i~~~i~~~-----~~d~i~~~~~~~~-~l~~-~p~--~~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~e 1045 (2382)
T KOG0890|consen 975 HIELNLVSSILDFISLD-----NRDNIQILKSDIP-ILPS-IPE--LGNLKAAIQEARGLLSEDDLDDQLRDFMKKLKHE 1045 (2382)
T ss_pred cccHHHHHHHHHHHHHh-----hHHHHHhhhcccc-ccCC-chH--HHHHHHHHHHHHhhccccchhhhhHHHHHHhHhh
Confidence 33332222222211110 0000111111111 1111 111 1112222223333332211255667777777888
Q ss_pred CchHHHHHHHHhHHHHhh------------hchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814 205 HWRVRLAIIEYIPLLASQ------------LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260 (382)
Q Consensus 205 ~~~vr~~~~~~l~~l~~~------------~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 260 (382)
+-.||......+..+... .+++....+++..+.....+.+.+.+..+++++|.+..
T Consensus 1046 nl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~~~~~~~~akcLg~lga 1113 (2382)
T KOG0890|consen 1046 NLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKKTSQLEELCAKCLGELGA 1113 (2382)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888888887766541 12233345677777777777677888889999998864
No 409
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=31.18 E-value=3e+02 Score=22.60 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=18.3
Q ss_pred HHHHHhHHHHHHHhcCCCCccHHhHHHHHH
Q 016814 343 SMVEKTIRPCLVELTEDPDVDVRFFATQAI 372 (382)
Q Consensus 343 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~al 372 (382)
..+...+-|.+.-+...++..++....+.+
T Consensus 184 ~~~~~ll~PF~~~~~~s~~k~l~~~i~~~V 213 (217)
T PF05997_consen 184 EPLLLLLEPFVKLLAKSPDKVLRKRIKESV 213 (217)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 344455556555566677777777665543
No 410
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=31.07 E-value=3.7e+02 Score=23.67 Aligned_cols=255 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred hhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHH-------HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814 115 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI-------EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187 (382)
Q Consensus 115 il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~-------~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~ 187 (382)
++..+.++++.-++-.|-.+++++..+.-........ ..+...+...+.+..-+.-.-.+-.+-.+.+... +
T Consensus 150 fleyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~a-q 228 (432)
T COG5231 150 FLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECA-Q 228 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHH-H
Q ss_pred hHhhhHHHHHHHHh----cCCCchHHHHHHHHhHHHHhhhchhhhH-----HHHHHHHHHHhcc--chhHHHHHHHHHHH
Q 016814 188 LLSQSLLPAIVELA----EDRHWRVRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLQD--KVYSIRDAAANNLK 256 (382)
Q Consensus 188 ~~~~~llp~l~~~~----~d~~~~vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d--~~~~vr~~a~~~l~ 256 (382)
.+ +.....+..++ .+...+|-+-++..+..++..-+..... ..+.|...-++.. .+.+++.-.-..-.
T Consensus 229 di-~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s 307 (432)
T COG5231 229 DI-DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRS 307 (432)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHH
Q ss_pred HHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHH--HHHHHhccccChhhhhhhhHHHHHhhccCCCcc-HHHHHHHHH
Q 016814 257 RLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTIL--RAISLLAPVMGSEITCSRLLPVVINASKDRVPN-IKFNVAKVL 333 (382)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~--~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~-vR~~a~~~l 333 (382)
.+.+....=...+..+..+...+-..++..+..-. ..+..+.+ -.-.++..+...++..+++ .-..|+.-+
T Consensus 308 ~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~k------dny~i~k~L~~~lq~n~~nt~i~vAc~Di 381 (432)
T COG5231 308 RLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIK------DNYEIVKVLKKYLQSNNPNTWICVACSDI 381 (432)
T ss_pred HHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhh------hhHHHHHHHHHHHhcCCCCceEeeeHhhH
Q ss_pred HHHhhhhhHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 334 QSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 334 ~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
+.+....+.. ...-.....+-.+.+.+|++||..|.+|++.+..
T Consensus 382 ~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 382 FQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
No 411
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=30.88 E-value=6.5e+02 Score=26.43 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=50.2
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 016814 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 103 (382)
Q Consensus 37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~ 103 (382)
.+.++..+..+ +..+|.+++..+..-.+.+.......+.+..++..+.+.-..+|.+...++..+.
T Consensus 75 ~ldlf~klas~-l~~~r~~aa~~Ll~~lq~~~~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~ 140 (1129)
T KOG1926|consen 75 KLDLFTKLASS-LRPVRLAAAFQLLADLQELRDAEELSYVLNRLIRGLSSDRESARLGFSLILTEVL 140 (1129)
T ss_pred HHHHHHHHHhh-cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 44445555444 7889999988877766666666666788999998888777889999999988876
No 412
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.39 E-value=6e+02 Score=25.85 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=73.8
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhH
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 155 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 155 (382)
.+-.+-+.+....+.-.-.+...+.++-+..+-+.+.+..+=.+.....+.+-..|-...+...+-.+++++-.....++
T Consensus 25 ~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~l 104 (970)
T KOG1988|consen 25 VLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFL 104 (970)
T ss_pred HHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence 33344444444333333444455555555444445555555566667778888899999998887776776654455666
Q ss_pred HHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814 156 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187 (382)
Q Consensus 156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~ 187 (382)
..+.......++.-|..++..++.+...+++-
T Consensus 105 rri~~V~hsnDp~aRAllL~ilg~~s~lipEf 136 (970)
T KOG1988|consen 105 RRIFYVDHSNDPVARALLLRILGQLSALIPEF 136 (970)
T ss_pred heeEEeecCCCHHHHHHHHHHHHHhhhhcccc
Confidence 66666667788999999999999988877653
No 413
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=30.29 E-value=2.2e+02 Score=29.30 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=47.0
Q ss_pred hHhhhHHHHHHHHhc-CCCchHHHHHHHHhHHHHhhhchhhhHHHHHHH-----HHHHhccchhHHHHHHHHHHHHHHHH
Q 016814 188 LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL-----CMQWLQDKVYSIRDAAANNLKRLAEE 261 (382)
Q Consensus 188 ~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~-----l~~~l~d~~~~vr~~a~~~l~~~~~~ 261 (382)
.+.+.+-..+.+..+ +.+..||......+..+..... +.+...++.. +...--|.+..||..+.+.+..++..
T Consensus 425 gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr-~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~ 503 (1697)
T KOG3687|consen 425 GWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINR-QFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEG 503 (1697)
T ss_pred hHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhh-hhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhh
Confidence 333444444555544 6667778777777776653222 2223333322 22333467889999999999999988
Q ss_pred hChH
Q 016814 262 FGPE 265 (382)
Q Consensus 262 ~~~~ 265 (382)
+...
T Consensus 504 C~t~ 507 (1697)
T KOG3687|consen 504 CHTH 507 (1697)
T ss_pred cchh
Confidence 7653
No 414
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=30.09 E-value=1.2e+02 Score=17.65 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=16.0
Q ss_pred HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
+++-..+.+++...++..|...+..++.+.++
T Consensus 6 eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 6 EYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 45555556665555556666666555555543
No 415
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.82 E-value=2.2e+02 Score=27.95 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=49.8
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
++.+.+..+.+-.+..++.-++..+...++.++.+ ....++|.+-.+|.+....-+...+.+|-++...+|.
T Consensus 676 DiK~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLD-l~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt 747 (825)
T KOG0267|consen 676 DIKGSIGSLRKLADNSVQADVLNILTEKIEILTLD-LCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGT 747 (825)
T ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHH-HHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhh
Confidence 34444444444344556666677777767767766 5678888888888888888888888888888777764
No 416
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=29.55 E-value=3.9e+02 Score=23.45 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHHHH
Q 016814 88 EAEVRIAAAGKVTKFCR 104 (382)
Q Consensus 88 ~~~VR~~a~~~l~~l~~ 104 (382)
...+|.+|+.++..+..
T Consensus 51 ~f~lR~AA~~c~kay~~ 67 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFY 67 (312)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHh
Confidence 57899999999998854
No 417
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=29.46 E-value=1.4e+02 Score=20.48 Aligned_cols=15 Identities=27% Similarity=0.087 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHh
Q 016814 53 RYMVANQLYELCEAV 67 (382)
Q Consensus 53 R~~a~~~l~~l~~~~ 67 (382)
|.+++.+|+.+...+
T Consensus 6 rH~~VLGL~Alv~a~ 20 (90)
T PF11919_consen 6 RHAAVLGLSALVLAF 20 (90)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHc
Confidence 444444444444333
No 418
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=29.28 E-value=77 Score=19.08 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=8.1
Q ss_pred CccHHHHHHHHHHHH
Q 016814 322 VPNIKFNVAKVLQSL 336 (382)
Q Consensus 322 ~~~vR~~a~~~l~~i 336 (382)
++++|.+.+++|-.+
T Consensus 32 ~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 32 DPDLRMKLVKALILL 46 (52)
T ss_pred CHHHHHHHHHHHHHH
Confidence 455565555555444
No 419
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=28.30 E-value=4.2e+02 Score=23.42 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhcc
Q 016814 286 YRMTILRAISLLAP 299 (382)
Q Consensus 286 ~r~~a~~~l~~l~~ 299 (382)
.|......+-.++.
T Consensus 122 aR~~Vy~~lv~la~ 135 (378)
T KOG2753|consen 122 ARYQVYMSLVTLAA 135 (378)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444433
No 420
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=27.84 E-value=70 Score=15.68 Aligned_cols=18 Identities=33% Similarity=0.720 Sum_probs=8.2
Q ss_pred hHHHHHhhhcCcchHHHH
Q 016814 271 ITPQVLEMINNPHYLYRM 288 (382)
Q Consensus 271 l~~~l~~~l~~~~~~~r~ 288 (382)
++|.+.+.+.+++-.+|.
T Consensus 4 IVpyi~~~L~N~~LAl~l 21 (24)
T PF09268_consen 4 IVPYILNTLQNPDLALRL 21 (24)
T ss_dssp HHHHHHHTT--HHHHHHH
T ss_pred chhHHHhccCCHHHHHHH
Confidence 555555555555544443
No 421
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=27.07 E-value=1.2e+02 Score=16.59 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=16.1
Q ss_pred cCCCCccHHhHHHHHHHHH
Q 016814 357 TEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 357 ~~d~~~~vr~~a~~al~~~ 375 (382)
.+|+|.-||..|..++..+
T Consensus 15 ~~D~D~lvr~hA~~~Le~L 33 (36)
T PF10304_consen 15 STDNDDLVREHAQDALEEL 33 (36)
T ss_pred HhCCcHHHHHHHHHHHHHH
Confidence 5688999999999998765
No 422
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=26.92 E-value=4.3e+02 Score=23.15 Aligned_cols=183 Identities=11% Similarity=0.080 Sum_probs=102.1
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHh-hhchhh-----h--HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLAS-QLGVGF-----F--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 262 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~-~~~~~~-----~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 262 (382)
..+++.+.+.+.+-++.-|..+...+..+.. .+|... + .+.+++.++..-.+ ..+.|+.+=..+.+..
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~----~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN----TPEIALTCGNMLRECI 153 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc----chHHHHHHHHHHHHHH
Confidence 3445555555566677777777777766643 233211 1 13455555544222 2333444433333333
Q ss_pred ChHHHHhh-----hHHHHHhhhcCcchHHHHHHHHHHHHhccccCh---hhh---hhhhHHH-HHhhccCCCccHHHHHH
Q 016814 263 GPEWAMQH-----ITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EIT---CSRLLPV-VINASKDRVPNIKFNVA 330 (382)
Q Consensus 263 ~~~~~~~~-----l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~---~~~~l~~-l~~~l~d~~~~vR~~a~ 330 (382)
.-+...+. -+-.+..+..-++..+-.-|...+..+...... +.+ ...+++. .-.++.++++-+|..+.
T Consensus 154 rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 154 RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 32322221 122334445556666666666666665443221 111 1223333 55678899999999999
Q ss_pred HHHHHHhhhhhHHH----HH--HhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 331 KVLQSLIPIVDQSM----VE--KTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 331 ~~l~~i~~~~~~~~----~~--~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
+.++.+...-.+.. +. ..-+..+-.++.|+..+++..|...+..++.
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 99999876433321 11 2455667778999999999999988877654
No 423
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=26.88 E-value=2.5e+02 Score=20.41 Aligned_cols=67 Identities=4% Similarity=0.008 Sum_probs=43.1
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc---CCCcHHHHHHHHHHHHHHHHhhCHH
Q 016814 40 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL---RDNEAEVRIAAAGKVTKFCRILNPE 109 (382)
Q Consensus 40 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l---~d~~~~VR~~a~~~l~~l~~~~~~~ 109 (382)
.+.+..++.+|...-..+.. |+...-.......++..+...+ ...+|.+...|+..|..++...+++
T Consensus 7 ~v~eAT~~d~~gp~~~~l~e---Ia~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~ 76 (125)
T PF01417_consen 7 KVREATSNDPWGPPGKLLAE---IAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER 76 (125)
T ss_dssp HHHHHTSSSSSS--HHHHHH---HHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH
T ss_pred HHHHHcCCCCCCcCHHHHHH---HHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH
Confidence 34566666666554444444 4443333333356888888887 6678999999999999998877665
No 424
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=26.82 E-value=4.5e+02 Score=23.25 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=47.3
Q ss_pred HHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHH--HHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcc-h
Q 016814 208 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI--RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH-Y 284 (382)
Q Consensus 208 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v--r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~ 284 (382)
+|..+...+-.++...+--.+...=+..+...+++-+..+ ......++.+.......-.....++..++..++..+ .
T Consensus 122 aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas 201 (378)
T KOG2753|consen 122 ARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNAS 201 (378)
T ss_pred HHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchh
Confidence 7888888777777654422111111233445556554443 333444555544443322233445555555555555 6
Q ss_pred HHHHHHHHHHHHhc
Q 016814 285 LYRMTILRAISLLA 298 (382)
Q Consensus 285 ~~r~~a~~~l~~l~ 298 (382)
.-|+.|.+|+....
T Consensus 202 ~AredA~rcV~~av 215 (378)
T KOG2753|consen 202 EAREDAMRCVVEAV 215 (378)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777775544
No 425
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=26.78 E-value=3e+02 Score=21.25 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHHhccccChhhh-hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHH
Q 016814 290 ILRAISLLAPVMGSEIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFA 368 (382)
Q Consensus 290 a~~~l~~l~~~~~~~~~-~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a 368 (382)
...++..++...+.... ...-+..++..+..=..++-..-+.++--+... ...+.+.++-.|.+.+-..+.+.|..|
T Consensus 75 ~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~--s~~lrd~lilvLRKamf~r~~~~R~~A 152 (158)
T PF14676_consen 75 YIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKF--SPSLRDSLILVLRKAMFSRELDARQMA 152 (158)
T ss_dssp HHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHTT-SSHHHHHHH
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 45666666655443210 011122233333333333433333333333221 124556777778887777888888888
Q ss_pred HHHH
Q 016814 369 TQAI 372 (382)
Q Consensus 369 ~~al 372 (382)
..++
T Consensus 153 v~Gf 156 (158)
T PF14676_consen 153 VNGF 156 (158)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 426
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=25.41 E-value=8.6e+02 Score=26.07 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=18.9
Q ss_pred CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc
Q 016814 165 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 202 (382)
Q Consensus 165 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~ 202 (382)
++.+||..|++.++.+.. +.+ -..+|-+.+.++
T Consensus 902 PDqeVR~~AVqwi~~ls~----DeL-~d~LPQlVQALK 934 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIARLSN----DEL-LDYLPQLVQALK 934 (1639)
T ss_pred CcHHHHHHHHHHHHhcCc----HHH-HHHHHHHHHHHH
Confidence 467777777777776542 222 344555555543
No 427
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=25.11 E-value=3.3e+02 Score=21.12 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=26.1
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 109 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 109 (382)
.++|.+..++.++...-...+++.+..+.+.+++.
T Consensus 69 ~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~ 103 (164)
T PF13925_consen 69 DLLPLIEELLQSKYESYISVALEMLRSILKKFGPV 103 (164)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888777777778888887777766554
No 428
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.75 E-value=2.3e+02 Score=19.29 Aligned_cols=54 Identities=11% Similarity=0.239 Sum_probs=25.5
Q ss_pred HhhHHHHHHhhcCCC--hHHHHHHHHhhHHhhhh-hchhhHhhhHHHHHHHHhcCCC
Q 016814 152 EQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQV-IGIDLLSQSLLPAIVELAEDRH 205 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~--~~vr~~~~~~l~~~~~~-~~~~~~~~~llp~l~~~~~d~~ 205 (382)
.+.+..+.+.++|.. -++|+++-++...+..- -++.......+..|.+..+|+|
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPN 72 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPN 72 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCC
Confidence 445555555555543 35565555555554331 1111122344555555556655
No 429
>PF14961 BROMI: Broad-minded protein
Probab=24.62 E-value=1.3e+02 Score=31.40 Aligned_cols=67 Identities=7% Similarity=-0.047 Sum_probs=49.5
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhc-cChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhC
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKL-LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 68 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~-~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~ 68 (382)
+++|-.+..-+||..|.+.+...-.. .-..+.|+.+..-+...+.|+|+.+...+++...+.-...+
T Consensus 167 ~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 167 ADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
Confidence 44555666779999999888654321 22346688888889999999999999999988777665443
No 430
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.35 E-value=2.8e+02 Score=20.13 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=42.4
Q ss_pred HHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHhCh
Q 016814 197 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRLAEEFGP 264 (382)
Q Consensus 197 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~ 264 (382)
+.+..++++|..-...+..+..... .. .-...++..+...+ ...+|.+...|+..+..++.+-+.
T Consensus 8 v~eAT~~d~~gp~~~~l~eIa~~t~--~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~ 75 (125)
T PF01417_consen 8 VREATSNDPWGPPGKLLAEIAQLTY--NS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSE 75 (125)
T ss_dssp HHHHTSSSSSS--HHHHHHHHHHTT--SC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-H
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHh--cc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCH
Confidence 4555667777766666665555432 22 22356778888877 667899999999999998886433
No 431
>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]
Probab=23.90 E-value=3e+02 Score=26.99 Aligned_cols=73 Identities=21% Similarity=0.350 Sum_probs=49.5
Q ss_pred HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcC--CChHHHHHHHHhhHHhhh
Q 016814 110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQ 182 (382)
Q Consensus 110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~~~~~l~~~~~ 182 (382)
.+.+.++.....+++++--.--......+..+|+.-..+.-.+.++.++..-++| +.++.+..+.+++..+..
T Consensus 923 VvmdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~yy~h~L~div~Y~elKte~fQ~lRE~GN 997 (1253)
T KOG3534|consen 923 VVMDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEYYHHHLKDIVEYPELKTEFFQSLREVGN 997 (1253)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 4456677777778777665555566677777776544444456777777777776 467888888888777654
No 432
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=23.66 E-value=5.5e+02 Score=23.25 Aligned_cols=266 Identities=16% Similarity=0.121 Sum_probs=126.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHH--HhCCccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH----HHHHHhhh
Q 016814 45 SQDKSWRVRYMVANQLYELCE--AVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHIL 116 (382)
Q Consensus 45 ~~d~~~~vR~~a~~~l~~l~~--~~~~~~~--~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~il 116 (382)
..|++...|+.+.+.+...+. .+.+-.. ...+...+..+++.+..+-...+...++-.+-..++ +.+....-
T Consensus 69 ~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~ 148 (427)
T KOG2842|consen 69 VKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLG 148 (427)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccc
Confidence 368888999999998765543 2222111 123566677777776655444444444544444432 23333445
Q ss_pred HhhhhhcCC--CchHHHHHHHHHHHhhccccChHh--HHHhhH----HHHHHhhcCCChHHHHHH-----------HHhh
Q 016814 117 PCVKELSSD--SSQHVRSALASVIMGMAPLLGKDA--TIEQLL----PIFLSLLKDEFPDVRLNI-----------ISKL 177 (382)
Q Consensus 117 ~~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~----~~l~~~l~d~~~~vr~~~-----------~~~l 177 (382)
|.+..+..| .+...|..++.+++.-+-....+. ....++ ......+.+.+..|-..+ ++++
T Consensus 149 ~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~ 228 (427)
T KOG2842|consen 149 PFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSL 228 (427)
T ss_pred hHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHH
Confidence 555555544 456677777777665443222111 111110 001111233222211111 1111
Q ss_pred HH-hhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhh---HHHHHHHHHHHhccchh-----
Q 016814 178 DQ-VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF---DDKLGALCMQWLQDKVY----- 245 (382)
Q Consensus 178 ~~-~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~---~~~l~~~l~~~l~d~~~----- 245 (382)
.- ++.....+.....+.|.+..++......+|....+.+..+..... .+++ .+++...+-.+-+|.+.
T Consensus 229 ~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssKs~~kk 308 (427)
T KOG2842|consen 229 LLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSKSRAKK 308 (427)
T ss_pred HHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhhhhHHH
Confidence 11 110011123334466888888888888888877777766654332 2221 25666666666665443
Q ss_pred --HHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhh-----hcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc
Q 016814 246 --SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-----INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 318 (382)
Q Consensus 246 --~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-----l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l 318 (382)
+++..+...+-..++ +...|...-. +.=.+|.....+-....-++..+......++++-.++.+-
T Consensus 309 dkR~qr~~fr~vl~~ie--------e~~~pe~sVRfG~etl~LDSW~~~~~Y~~~~~VLGsGm~~~L~~nEflRdvF~lg 380 (427)
T KOG2842|consen 309 DRRVQRSVFRDVLQTIE--------ERDIPEESVRIGQETLYLDSWAKKLRYDTFKEVLGSGMSEQLQKNEFLRDVFGLG 380 (427)
T ss_pred HHHHHHHHHHHHHHHHh--------cccCchhheeecceeeehhHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHHHhcC
Confidence 344444444444443 1122222211 1223566655555555445555444434455555555443
No 433
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=22.96 E-value=8.9e+02 Score=25.35 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=37.1
Q ss_pred CCCccHHHHHHHHHHHHhhhhhH----HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 320 DRVPNIKFNVAKVLQSLIPIVDQ----SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 320 d~~~~vR~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
+.+.+||...+.++..+...... +....-++-.+...--|.+.+||..+.+++..++..
T Consensus 441 ~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~ 503 (1697)
T KOG3687|consen 441 ESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEG 503 (1697)
T ss_pred cccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhh
Confidence 66778888888888877643321 122222222233334467788999999999887753
No 434
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.84 E-value=1.3e+03 Score=27.06 Aligned_cols=200 Identities=11% Similarity=0.089 Sum_probs=100.2
Q ss_pred HHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcC---CCchHHHHHHHHhHHHHhhhchhh----hHHHHHHHHHHHh
Q 016814 168 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED---RHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWL 240 (382)
Q Consensus 168 ~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l 240 (382)
..+..+++.+..+.+..|...+ ....|.+..++.. ...+.|..+.++...+...+.... +...+++.++.++
T Consensus 895 ~~k~~tl~~I~~~i~~~g~~~v-~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~l 973 (2382)
T KOG0890|consen 895 EQKKKTLKGIKKLISFMGSKAV-STRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILNDNEKSDILDRNIIAALFPLL 973 (2382)
T ss_pred HHHHHHHHhHHHHHhhccHHHH-HHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHh
Confidence 4456778888888888886655 4445544444332 234566666666666655443222 1112555566666
Q ss_pred ccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccC
Q 016814 241 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD 320 (382)
Q Consensus 241 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d 320 (382)
.+........-.+ .+... .......+.+.+- .+-+ .-+..+..+....+...+.+......++.+...+.+
T Consensus 974 ~~~~~~~v~~i~~---~i~~~--~~d~i~~~~~~~~-~l~~---~p~~~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~ 1044 (2382)
T KOG0890|consen 974 EHIELNLVSSILD---FISLD--NRDNIQILKSDIP-ILPS---IPELGNLKAAIQEARGLLSEDDLDDQLRDFMKKLKH 1044 (2382)
T ss_pred ccccHHHHHHHHH---HHHHh--hHHHHHhhhcccc-ccCC---chHHHHHHHHHHHHHhhccccchhhhhHHHHHHhHh
Confidence 4322222211111 11110 0000000111110 1111 112333333344444444433445667777888888
Q ss_pred CCccHHHHHHHHHHHHhhhh------------hHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 321 RVPNIKFNVAKVLQSLIPIV------------DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 321 ~~~~vR~~a~~~l~~i~~~~------------~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
++..||.....-++.....- +......+++..|..-+.+.+.+.+...++.++.++.
T Consensus 1045 enl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~~~~~~~~akcLg~lga 1113 (2382)
T KOG0890|consen 1045 ENLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKKTSQLEELCAKCLGELGA 1113 (2382)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88899988888887766511 1112234455555554444446677777777777654
No 435
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=22.43 E-value=7e+02 Score=23.98 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=43.8
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCC-ccHHHHHHHHHHHHhhhh
Q 016814 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRV-PNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~-~~vR~~a~~~l~~i~~~~ 340 (382)
-.+|.++.++...++.-+ .++..+..+...-..+ ..++.+|.+...+.|.. .++|...+..+..+....
T Consensus 199 PhlP~l~~lL~q~~p~~~-~ll~~l~~LI~Qk~~e-vL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~ 268 (851)
T KOG3723|consen 199 PHLPELLALLSQLEPEQY-HLLRLLHVLIKQKQLE-VLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVA 268 (851)
T ss_pred cccHHHHHHhcCCCHHHH-HHHHHHHHHHHhccHH-HHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccc
Confidence 356777777877776544 3445555554433333 67888998888777654 457777777776665443
No 436
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=22.40 E-value=2.9e+02 Score=19.57 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=50.5
Q ss_pred hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 306 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
+...++..+.+.+....+.-|..++..+..+....+.. .+...+.+.+.......++++|....+.+..+.
T Consensus 34 ~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~ 107 (114)
T cd03562 34 HAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWE 107 (114)
T ss_pred HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 34566666667777777788888888888888876543 344555677766667788889988777776553
No 437
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=22.07 E-value=8e+02 Score=24.48 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=14.6
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhc
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMA 142 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~ 142 (382)
.+...+.+.++..+|.--...++.|..+.
T Consensus 107 ~~~~~~q~sl~~~~~n~ar~llrfL~dL~ 135 (759)
T KOG1104|consen 107 YMIEELQESLKSGNWNEARYLLRFLSDLS 135 (759)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 44444455555555554444555555554
No 438
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=21.33 E-value=3.2e+02 Score=19.58 Aligned_cols=15 Identities=0% Similarity=-0.046 Sum_probs=8.7
Q ss_pred ccHHhHHHHHHHHHH
Q 016814 362 VDVRFFATQAIQSID 376 (382)
Q Consensus 362 ~~vr~~a~~al~~~~ 376 (382)
+++|....+.+..+.
T Consensus 92 ~~~~~ki~kll~iW~ 106 (121)
T smart00582 92 DETKKKIRRLLNIWE 106 (121)
T ss_pred HHHHHHHHHHHHHHh
Confidence 456666666655544
No 439
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=21.14 E-value=5.8e+02 Score=22.57 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 016814 50 WRVRYMVANQLYELCE 65 (382)
Q Consensus 50 ~~vR~~a~~~l~~l~~ 65 (382)
|+-|...++.++.+..
T Consensus 36 p~~r~~~~~~~~~~v~ 51 (367)
T PF04286_consen 36 PKNRERIAESIGEMVE 51 (367)
T ss_pred cccHHHHHHHHHHHHH
Confidence 4557777777777653
No 440
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.78 E-value=7.1e+02 Score=23.41 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=71.1
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhh
Q 016814 192 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 271 (382)
Q Consensus 192 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 271 (382)
.+...+.++.++...++--..++.|..++..-..+ .......++..+..+...+|..+++.+..+.-. ...|+..+
T Consensus 7 kl~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee--~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~r--s~~FR~li 82 (661)
T KOG2374|consen 7 KLIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE--VRLSSQTLMELMRHNHSQVRYLTLQIIDELFMR--SKLFRTLI 82 (661)
T ss_pred HHHHHHHHHhhcCCcccChHHHHHHHHHHhccHHH--HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 45555666666666666666777777776544333 233455667777778888999999888887633 23455555
Q ss_pred HHHHHhhhc-----Cc----------chHHHHHHHHHHHHhccccChh
Q 016814 272 TPQVLEMIN-----NP----------HYLYRMTILRAISLLAPVMGSE 304 (382)
Q Consensus 272 ~~~l~~~l~-----~~----------~~~~r~~a~~~l~~l~~~~~~~ 304 (382)
+..+.++|. ++ ....|..|+.++...-..||..
T Consensus 83 i~n~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~~ 130 (661)
T KOG2374|consen 83 IENLDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGFH 130 (661)
T ss_pred HhCHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 555554442 22 1358899999999988888865
No 441
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=20.71 E-value=3.1e+02 Score=19.19 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHH-h-ChHHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814 246 SIRDAAANNLKRLAEE-F-GPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPV 300 (382)
Q Consensus 246 ~vr~~a~~~l~~~~~~-~-~~~~~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 300 (382)
+||..|++++..=... + ..+.. ...++..++++++.+.+.....++..+..+.+.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~ 60 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS 60 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC
Confidence 5666666665433221 1 11111 245677777888877766777777777776643
No 442
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=20.06 E-value=4.4e+02 Score=20.73 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHHHHHHHHhc-cccChh--hhhhhhHHHHHhhccCCC
Q 016814 288 MTILRAISLLA-PVMGSE--ITCSRLLPVVINASKDRV 322 (382)
Q Consensus 288 ~~a~~~l~~l~-~~~~~~--~~~~~~l~~l~~~l~d~~ 322 (382)
..|...+..+. ...+.- ++.+.++|.+.+.|.+|.
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCch
Confidence 45777777776 443322 567788999999998874
Done!