Query 016814
Match_columns 382
No_of_seqs 207 out of 1385
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 04:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 3.1E-44 1.1E-48 339.8 35.3 373 4-376 210-586 (588)
2 1b3u_A Protein (protein phosph 100.0 7.9E-43 2.7E-47 330.2 36.1 379 3-381 170-552 (588)
3 4fdd_A Transportin-1; heat rep 100.0 8.3E-30 2.8E-34 250.6 32.5 375 5-381 98-516 (852)
4 4fdd_A Transportin-1; heat rep 100.0 2.6E-28 9.1E-33 239.9 40.2 373 7-381 58-475 (852)
5 2bpt_A Importin beta-1 subunit 100.0 1.5E-27 5E-32 235.5 37.7 375 5-381 103-533 (861)
6 2bpt_A Importin beta-1 subunit 100.0 1.1E-26 3.8E-31 229.2 36.3 376 4-381 273-715 (861)
7 1u6g_C TIP120 protein, CAND1; 100.0 6.6E-27 2.3E-31 238.4 32.9 377 4-381 55-552 (1230)
8 1u6g_C TIP120 protein, CAND1; 100.0 2.1E-26 7.1E-31 234.8 34.2 376 4-380 182-682 (1230)
9 1qgr_A Protein (importin beta 100.0 2.9E-26 9.8E-31 226.6 33.9 374 5-381 98-541 (876)
10 1ibr_B P95, importin beta-1 su 100.0 1.1E-25 3.7E-30 206.5 30.8 345 9-355 49-458 (462)
11 1qgr_A Protein (importin beta 99.9 8.8E-25 3E-29 216.0 36.3 369 9-380 49-482 (876)
12 2jdq_A Importin alpha-1 subuni 99.9 6.6E-25 2.3E-29 200.6 31.2 373 4-376 27-442 (450)
13 1wa5_B Importin alpha subunit; 99.9 9.7E-25 3.3E-29 203.4 31.8 372 4-376 94-509 (530)
14 1ibr_B P95, importin beta-1 su 99.9 2.9E-25 9.9E-30 203.7 26.9 371 6-381 10-441 (462)
15 2jdq_A Importin alpha-1 subuni 99.9 2.6E-23 8.8E-28 190.0 29.4 341 38-378 22-391 (450)
16 4b8j_A Importin subunit alpha- 99.9 6.9E-23 2.4E-27 190.9 32.2 372 4-376 81-495 (528)
17 1wa5_B Importin alpha subunit; 99.9 6.4E-23 2.2E-27 191.1 29.1 344 35-378 86-458 (530)
18 2vgl_B AP-2 complex subunit be 99.9 6.4E-21 2.2E-25 179.2 33.5 359 3-375 92-530 (591)
19 4b8j_A Importin subunit alpha- 99.9 7.4E-22 2.5E-26 184.0 26.1 342 37-378 75-444 (528)
20 1jdh_A Beta-catenin; beta-cate 99.9 2.7E-20 9.1E-25 173.6 28.0 373 3-375 107-528 (529)
21 2vgl_B AP-2 complex subunit be 99.9 4E-20 1.4E-24 173.9 27.8 355 4-376 56-418 (591)
22 1jdh_A Beta-catenin; beta-cate 99.9 3.4E-20 1.1E-24 172.9 27.2 375 2-376 22-488 (529)
23 2z6h_A Catenin beta-1, beta-ca 99.9 8.8E-20 3E-24 173.7 28.2 376 2-377 103-527 (644)
24 3now_A UNC-45 protein, SD10334 99.9 5.1E-19 1.7E-23 167.6 32.6 376 2-377 295-737 (810)
25 2z6h_A Catenin beta-1, beta-ca 99.9 3.6E-19 1.2E-23 169.5 31.6 376 2-377 19-486 (644)
26 3ul1_B Importin subunit alpha- 99.9 2E-19 6.9E-24 166.1 28.8 371 5-375 65-476 (510)
27 3now_A UNC-45 protein, SD10334 99.9 1.4E-19 4.9E-24 171.4 27.9 376 2-377 335-782 (810)
28 3tpo_A Importin subunit alpha- 99.9 4.6E-19 1.6E-23 164.6 31.0 371 5-375 84-495 (529)
29 2z6g_A B-catenin; FULL-length, 99.9 2.1E-19 7.2E-24 173.8 28.8 376 2-377 239-663 (780)
30 1oyz_A Hypothetical protein YI 99.9 7.1E-20 2.4E-24 156.3 22.7 254 75-373 23-278 (280)
31 2z6g_A B-catenin; FULL-length, 99.9 1.1E-19 3.7E-24 175.9 25.4 374 3-376 156-621 (780)
32 1oyz_A Hypothetical protein YI 99.8 1.9E-19 6.5E-24 153.6 20.6 253 37-334 24-278 (280)
33 3ul1_B Importin subunit alpha- 99.8 1.8E-18 6.1E-23 159.8 27.0 341 38-378 59-431 (510)
34 3tpo_A Importin subunit alpha- 99.8 3.6E-18 1.2E-22 158.7 28.9 342 37-378 77-450 (529)
35 1w63_A Adapter-related protein 99.8 2.9E-18 1E-22 161.7 27.5 360 3-376 113-576 (618)
36 2qk2_A LP04448P; mini spindles 99.8 6.2E-18 2.1E-22 140.8 19.8 196 28-227 7-211 (242)
37 1w63_A Adapter-related protein 99.8 1.1E-16 3.8E-21 150.9 30.0 317 5-340 78-416 (618)
38 2qk2_A LP04448P; mini spindles 99.8 4.8E-18 1.7E-22 141.4 17.7 182 194-380 17-208 (242)
39 3ltm_A Alpha-REP4; protein eng 99.8 4.7E-17 1.6E-21 132.6 20.0 188 35-262 18-205 (211)
40 3ltj_A Alpharep-4; protein eng 99.8 8.1E-17 2.8E-21 130.1 20.1 187 33-259 11-197 (201)
41 2vgl_A Adaptor protein complex 99.8 3E-15 1E-19 140.7 32.5 363 3-376 117-588 (621)
42 3ltm_A Alpha-REP4; protein eng 99.7 1.2E-16 3.9E-21 130.3 18.8 182 3-224 25-206 (211)
43 3ltj_A Alpharep-4; protein eng 99.7 1.7E-16 5.9E-21 128.2 19.3 178 3-220 20-197 (201)
44 2vgl_A Adaptor protein complex 99.7 1.2E-14 4E-19 136.7 30.2 353 10-381 51-437 (621)
45 1wa5_C Importin alpha RE-expor 99.7 8.4E-14 2.9E-18 138.5 36.5 367 9-378 49-526 (960)
46 1xm9_A Plakophilin 1; armadill 99.7 1.6E-14 5.5E-19 131.4 28.9 337 38-376 4-448 (457)
47 3l6x_A Catenin delta-1; cateni 99.7 7.2E-14 2.5E-18 128.2 32.5 346 32-377 44-476 (584)
48 2qk1_A Protein STU2; STU2P, XM 99.7 1.1E-15 3.7E-20 126.8 16.7 184 197-381 21-224 (249)
49 1wa5_C Importin alpha RE-expor 99.7 7E-14 2.4E-18 139.0 31.1 370 9-381 97-586 (960)
50 4hxt_A De novo protein OR329; 99.7 3.3E-14 1.1E-18 119.0 23.6 226 155-380 4-244 (252)
51 2qk1_A Protein STU2; STU2P, XM 99.7 5.9E-15 2E-19 122.4 18.6 186 4-189 23-227 (249)
52 4hxt_A De novo protein OR329; 99.7 1.2E-14 4E-19 121.7 20.4 227 76-302 3-244 (252)
53 1xm9_A Plakophilin 1; armadill 99.6 5.4E-14 1.9E-18 127.9 24.6 335 3-338 8-449 (457)
54 1lrv_A LRV, leucine-rich repea 99.6 6.9E-17 2.3E-21 131.9 4.6 187 2-294 55-241 (244)
55 4db8_A Armadillo-repeat protei 99.6 1.7E-14 5.8E-19 120.8 19.2 225 75-299 12-251 (252)
56 3l6x_A Catenin delta-1; cateni 99.6 6.8E-13 2.3E-17 121.8 30.8 336 4-339 55-477 (584)
57 4db8_A Armadillo-repeat protei 99.6 1.7E-14 5.9E-19 120.8 18.9 225 152-377 11-251 (252)
58 3nmz_A APC variant protein; pr 99.6 3.9E-13 1.3E-17 120.6 24.2 338 38-378 34-451 (458)
59 4ady_A RPN2, 26S proteasome re 99.6 1.3E-12 4.5E-17 124.3 27.4 330 11-375 372-717 (963)
60 2x1g_F Cadmus; transport prote 99.6 2.9E-12 1E-16 127.8 30.9 359 12-377 436-858 (971)
61 2iw3_A Elongation factor 3A; a 99.5 1.8E-12 6E-17 125.0 24.7 284 92-381 31-328 (986)
62 3nmz_A APC variant protein; pr 99.5 1E-11 3.5E-16 111.4 27.7 323 17-339 49-451 (458)
63 3ibv_A Exportin-T; karyopherin 99.5 1.6E-11 5.6E-16 120.9 30.4 370 8-381 101-570 (980)
64 2x19_B Importin-13; nuclear tr 99.5 4.5E-11 1.5E-15 119.3 34.0 362 10-380 116-559 (963)
65 2x1g_F Cadmus; transport prote 99.5 5.4E-12 1.9E-16 125.9 27.1 362 10-379 98-574 (971)
66 2x19_B Importin-13; nuclear tr 99.5 6.6E-11 2.2E-15 118.1 34.7 360 12-378 422-847 (963)
67 1lrv_A LRV, leucine-rich repea 99.5 1.2E-14 4E-19 118.7 6.0 164 2-256 79-242 (244)
68 3m1i_C Exportin-1; heat repeat 99.5 3.2E-11 1.1E-15 121.0 31.6 366 10-380 113-572 (1049)
69 4db6_A Armadillo repeat protei 99.5 1.2E-12 4.2E-17 106.2 17.6 187 191-377 11-209 (210)
70 4db6_A Armadillo repeat protei 99.5 1.2E-12 4.1E-17 106.3 16.7 188 33-220 9-208 (210)
71 3opb_A SWI5-dependent HO expre 99.5 7E-11 2.4E-15 110.4 29.0 370 7-378 266-729 (778)
72 4ady_A RPN2, 26S proteasome re 99.5 2.1E-11 7.1E-16 116.2 25.5 302 8-338 406-719 (963)
73 2db0_A 253AA long hypothetical 99.4 5.8E-10 2E-14 83.6 25.1 216 152-378 31-247 (253)
74 2iw3_A Elongation factor 3A; a 99.4 2.9E-11 9.8E-16 116.7 22.7 280 12-300 29-325 (986)
75 3opb_A SWI5-dependent HO expre 99.4 1E-09 3.4E-14 102.7 32.1 366 8-377 181-635 (778)
76 2of3_A ZYG-9; multifunctional 99.4 3.7E-11 1.3E-15 98.5 19.5 174 202-381 56-240 (266)
77 3m1i_C Exportin-1; heat repeat 99.4 6.7E-10 2.3E-14 111.5 31.0 370 9-380 149-621 (1049)
78 4ffb_C Protein STU2; tubulin f 99.4 8.1E-12 2.8E-16 105.8 14.5 182 197-381 14-216 (278)
79 3nmw_A APC variant protein; AR 99.4 1.3E-10 4.4E-15 101.2 21.5 253 51-304 47-339 (354)
80 3ibv_A Exportin-T; karyopherin 99.4 4.7E-10 1.6E-14 110.7 27.8 337 40-380 197-631 (980)
81 3nmw_A APC variant protein; AR 99.3 2.9E-10 9.9E-15 99.0 21.7 253 89-341 46-337 (354)
82 2db0_A 253AA long hypothetical 99.3 1.9E-09 6.7E-14 80.8 22.7 216 113-338 31-246 (253)
83 3tjz_B Coatomer subunit gamma; 99.3 3.7E-11 1.2E-15 103.4 15.3 303 52-373 44-349 (355)
84 4hat_C Exportin-1; heat repeat 99.3 3.5E-09 1.2E-13 104.7 30.7 359 19-378 435-879 (1023)
85 3oc3_A Helicase MOT1, MOT1; re 99.3 2.6E-11 9E-16 106.7 13.0 254 76-373 175-432 (800)
86 4hat_C Exportin-1; heat repeat 99.3 1.1E-08 3.7E-13 101.2 32.8 365 10-379 113-571 (1023)
87 2of3_A ZYG-9; multifunctional 99.3 9.9E-10 3.4E-14 90.1 20.5 178 160-344 53-242 (266)
88 3tjz_B Coatomer subunit gamma; 99.3 1E-10 3.5E-15 100.6 15.2 285 35-336 67-351 (355)
89 1xqr_A HSPBP1 protein; armadil 99.3 1.2E-09 4.3E-14 92.4 21.5 171 51-222 55-239 (296)
90 4ffb_C Protein STU2; tubulin f 99.3 2.2E-10 7.4E-15 97.0 16.4 185 77-265 12-217 (278)
91 3b2a_A TON_1937, putative unch 99.2 4.4E-09 1.5E-13 82.4 20.4 221 152-378 32-262 (265)
92 3b2a_A TON_1937, putative unch 99.2 1.4E-09 4.8E-14 85.1 17.0 182 75-260 33-218 (265)
93 1xqr_A HSPBP1 protein; armadil 99.2 2.1E-09 7.3E-14 91.0 19.4 145 194-338 83-238 (296)
94 1te4_A Conserved protein MTH18 99.1 9.7E-12 3.3E-16 92.5 0.3 121 229-374 10-130 (131)
95 3l9t_A Putative uncharacterize 99.1 1.2E-09 3.9E-14 86.6 12.0 139 34-183 69-208 (240)
96 1te4_A Conserved protein MTH18 99.1 3.1E-11 1E-15 89.8 1.9 84 117-216 45-128 (131)
97 3l9t_A Putative uncharacterize 99.0 8E-10 2.7E-14 87.5 8.8 133 2-145 76-209 (240)
98 3gjx_A Exportin-1; transport, 99.0 2.5E-06 8.5E-11 84.4 34.1 365 9-378 124-596 (1073)
99 3oc3_A Helicase MOT1, MOT1; re 99.0 2E-08 6.7E-13 88.9 16.9 232 6-256 183-432 (800)
100 3a6p_A Exportin-5; exportin-5, 98.9 1.4E-06 4.6E-11 88.4 28.0 366 9-380 108-616 (1204)
101 3gjx_A Exportin-1; transport, 98.8 5.4E-06 1.9E-10 82.0 29.6 357 19-377 461-904 (1073)
102 3u0r_A Apoptosis inhibitor 5; 98.6 1.5E-05 5.2E-10 69.8 22.6 281 10-302 41-361 (507)
103 3grl_A General vesicular trans 98.6 2.2E-05 7.4E-10 72.0 23.0 293 5-298 30-393 (651)
104 1vsy_5 Proteasome activator BL 98.5 4.3E-06 1.5E-10 82.1 18.7 335 2-341 513-969 (997)
105 3a6p_A Exportin-5; exportin-5, 98.5 4.1E-05 1.4E-09 77.7 26.0 329 10-341 220-660 (1204)
106 3u0r_A Apoptosis inhibitor 5; 98.5 0.00013 4.5E-09 64.0 24.9 264 78-354 32-314 (507)
107 4gmo_A Putative uncharacterize 98.5 0.00012 4.2E-09 69.8 25.8 148 34-182 33-214 (684)
108 3tt9_A Plakophilin-2; cell adh 98.3 2.7E-05 9.2E-10 63.0 15.8 148 74-221 7-180 (233)
109 3tt9_A Plakophilin-2; cell adh 98.3 5.8E-05 2E-09 61.0 16.3 186 192-377 8-229 (233)
110 3grl_A General vesicular trans 98.1 0.0013 4.6E-08 60.4 23.3 283 75-376 21-341 (651)
111 4gmo_A Putative uncharacterize 97.8 0.023 8E-07 54.1 31.5 138 6-143 43-214 (684)
112 1lsh_A Lipovitellin (LV-1N, LV 97.4 0.014 4.9E-07 58.4 19.7 132 191-335 390-540 (1056)
113 1vsy_5 Proteasome activator BL 97.3 0.0013 4.6E-08 64.7 10.4 176 5-184 768-968 (997)
114 3o2t_A Symplekin; heat repeat, 97.2 0.084 2.9E-06 45.8 23.4 183 169-356 41-272 (386)
115 1lsh_A Lipovitellin (LV-1N, LV 97.2 0.013 4.4E-07 58.7 17.4 170 153-341 391-579 (1056)
116 3gs3_A Symplekin, LD45768P; he 97.2 0.053 1.8E-06 44.3 17.8 127 169-298 31-172 (257)
117 3gs3_A Symplekin, LD45768P; he 97.1 0.077 2.6E-06 43.3 17.5 160 191-380 15-176 (257)
118 4atg_A TAF6; transcription, TF 96.6 0.18 6.2E-06 39.0 16.0 142 168-320 23-179 (196)
119 3o2t_A Symplekin; heat repeat, 96.6 0.33 1.1E-05 42.1 27.3 127 13-142 41-182 (386)
120 1upk_A MO25 protein; transfera 96.1 0.5 1.7E-05 39.8 18.3 186 73-261 76-284 (341)
121 2b6c_A Hypothetical protein EF 95.9 0.29 9.8E-06 39.1 13.7 131 39-183 58-189 (220)
122 3ldz_A STAM-1, signal transduc 95.4 0.13 4.3E-06 37.7 9.1 74 269-342 41-118 (140)
123 3jxy_A Alkylpurine DNA glycosy 95.3 0.86 2.9E-05 36.6 14.7 131 39-183 64-196 (232)
124 4atg_A TAF6; transcription, TF 95.2 0.79 2.7E-05 35.5 13.7 112 244-359 59-179 (196)
125 1x5b_A Signal transducing adap 94.5 0.23 7.8E-06 37.4 8.5 73 270-342 52-129 (163)
126 3ldz_A STAM-1, signal transduc 94.4 0.41 1.4E-05 35.0 9.5 98 45-148 18-119 (140)
127 1mhq_A ADP-ribosylation factor 94.3 0.89 3.1E-05 33.5 11.2 73 270-342 38-120 (148)
128 3g2s_A C-terminal fragment of 94.3 0.48 1.6E-05 35.0 9.6 98 44-147 23-130 (149)
129 2b6c_A Hypothetical protein EF 94.0 1.4 4.7E-05 35.1 12.6 127 4-144 62-189 (220)
130 1upk_A MO25 protein; transfera 93.8 2.7 9.1E-05 35.5 19.4 181 191-377 77-283 (341)
131 3g2s_A C-terminal fragment of 93.6 0.67 2.3E-05 34.2 9.2 73 309-381 48-130 (149)
132 3jxy_A Alkylpurine DNA glycosy 93.5 1.6 5.6E-05 35.0 12.3 154 4-178 68-223 (232)
133 1mhq_A ADP-ribosylation factor 92.9 2.1 7.1E-05 31.5 11.8 99 277-381 12-120 (148)
134 1juq_A ADP-ribosylation factor 92.8 1.1 3.9E-05 33.9 9.8 73 270-342 50-132 (171)
135 1x5b_A Signal transducing adap 92.7 1 3.6E-05 33.8 9.4 96 46-147 29-129 (163)
136 3zyq_A Hepatocyte growth facto 92.2 1.2 4.1E-05 35.6 9.7 72 309-380 45-121 (226)
137 1vsy_4 Proteasome activator BL 91.9 9.5 0.00033 36.8 23.4 112 31-143 334-455 (799)
138 3zyq_A Hepatocyte growth facto 91.7 1.6 5.5E-05 34.8 9.9 99 44-148 20-123 (226)
139 1juq_A ADP-ribosylation factor 90.7 4.3 0.00015 30.7 11.4 98 278-381 25-132 (171)
140 1w9c_A CRM1 protein, exportin 90.5 7 0.00024 32.8 21.1 134 89-223 43-198 (321)
141 1vdy_A Hypothetical protein (R 89.4 1.2 4.1E-05 32.3 6.5 102 40-142 15-129 (140)
142 3ut4_A CTHE_2751, putative unc 89.2 4.6 0.00016 28.8 10.2 93 231-336 31-128 (134)
143 2npp_B PP2A, B subunit, serine 88.3 13 0.00045 32.9 20.9 249 86-338 128-399 (449)
144 1elk_A Target of MYB1; superhe 88.3 3.9 0.00013 30.4 9.0 96 240-341 29-133 (157)
145 1dvp_A HRS, hepatocyte growth 88.2 8.3 0.00029 30.5 11.6 69 270-338 42-115 (220)
146 3fga_B Serine/threonine-protei 87.9 13 0.00045 32.4 22.4 252 85-338 94-366 (403)
147 1vdy_A Hypothetical protein (R 87.2 6 0.00021 28.6 9.0 68 197-266 16-83 (140)
148 3ut4_A CTHE_2751, putative unc 87.1 6.2 0.00021 28.2 8.8 99 185-297 25-128 (134)
149 1dvp_A HRS, hepatocyte growth 86.5 7.8 0.00027 30.7 10.4 96 45-146 18-118 (220)
150 3s4w_B Protein FACD2, fanconi 86.0 33 0.0011 35.1 23.1 149 230-380 399-552 (1323)
151 3gvo_A Pumilio 2, pumilio homo 84.6 11 0.00037 32.4 11.2 14 75-88 59-72 (351)
152 1w9c_A CRM1 protein, exportin 84.4 17 0.00059 30.5 17.7 60 203-263 133-199 (321)
153 3bwt_A Protein PUF4; pumilio, 83.8 18 0.00063 30.6 12.2 7 315-321 276-282 (333)
154 2fv2_A RCD1 required for cell 83.6 11 0.00037 30.5 9.6 142 231-373 101-264 (268)
155 1elk_A Target of MYB1; superhe 83.0 12 0.00042 27.7 10.7 95 46-146 30-133 (157)
156 3fga_B Serine/threonine-protei 82.2 25 0.00085 30.6 19.9 249 47-299 95-366 (403)
157 2npp_B PP2A, B subunit, serine 81.0 29 0.001 30.7 20.0 249 47-299 128-399 (449)
158 1vsy_4 Proteasome activator BL 80.4 44 0.0015 32.3 22.9 91 110-200 335-431 (799)
159 3rru_A TOM1L1 protein; structu 73.3 9.2 0.00031 28.2 6.0 73 270-342 53-134 (152)
160 2fv2_A RCD1 required for cell 73.2 35 0.0012 27.6 9.7 105 271-375 102-222 (268)
161 3s4w_B Protein FACD2, fanconi 72.7 90 0.0031 32.0 17.0 148 34-184 398-551 (1323)
162 1t06_A Hypothetical protein; s 72.5 5.7 0.00019 31.9 5.2 70 77-146 110-183 (235)
163 3rru_A TOM1L1 protein; structu 71.9 27 0.00092 25.7 10.2 98 45-148 29-135 (152)
164 3gvo_A Pumilio 2, pumilio homo 70.0 51 0.0017 28.1 14.1 18 111-128 128-145 (351)
165 3dad_A FH1/FH2 domain-containi 69.9 50 0.0017 27.9 15.2 140 203-342 129-290 (339)
166 1ho8_A Vacuolar ATP synthase s 68.7 65 0.0022 28.8 25.4 54 244-297 418-474 (480)
167 3bwt_A Protein PUF4; pumilio, 68.1 54 0.0018 27.6 15.0 18 111-128 116-133 (333)
168 1t06_A Hypothetical protein; s 66.8 13 0.00045 29.7 6.2 65 43-107 115-183 (235)
169 1ho8_A Vacuolar ATP synthase s 61.9 88 0.003 27.9 25.5 56 322-377 418-476 (480)
170 3k49_A MRNA-binding protein PU 59.9 44 0.0015 28.7 8.7 18 111-128 133-150 (369)
171 3vld_A DNA mismatch repair pro 59.8 97 0.0033 27.7 15.9 180 36-223 31-227 (500)
172 1sz9_A PCF11 protein; RNA poly 59.1 48 0.0017 24.0 9.5 71 269-339 42-115 (144)
173 2jak_A Serine/threonine-protei 54.7 1.1E+02 0.0037 26.6 16.6 57 47-103 140-202 (392)
174 3ebb_A Phospholipase A2-activa 51.3 1.1E+02 0.0036 25.6 16.3 93 284-376 162-262 (304)
175 3l3f_X Protein DOA1, DOA1/UFD3 46.7 23 0.00078 30.4 4.5 99 6-104 208-326 (362)
176 3k49_A MRNA-binding protein PU 45.2 1.5E+02 0.005 25.4 11.0 13 345-357 332-344 (369)
177 3pst_A Protein DOA1; protein d 44.7 28 0.00095 30.6 4.8 98 7-104 272-389 (425)
178 3gae_A Protein DOA1; UFD3, CDC 44.5 74 0.0025 25.7 7.1 98 6-103 99-216 (253)
179 3d9j_A RNA-binding protein 16; 44.1 82 0.0028 22.8 6.7 90 247-338 21-119 (145)
180 4fu3_A Regulation of nuclear P 41.3 85 0.0029 22.2 6.4 33 268-300 37-69 (135)
181 4f52_E Glomulin; cullin-ring E 40.6 2.3E+02 0.0077 26.3 12.9 104 229-336 315-429 (596)
182 3dad_A FH1/FH2 domain-containi 40.2 1.7E+02 0.0058 24.7 17.0 102 82-183 125-232 (339)
183 1sz9_A PCF11 protein; RNA poly 35.2 1.3E+02 0.0043 21.8 11.8 70 152-221 42-114 (144)
184 3ebb_A Phospholipase A2-activa 34.7 2E+02 0.0067 23.9 12.1 97 8-104 159-263 (304)
185 4fu3_A Regulation of nuclear P 32.4 72 0.0025 22.5 4.8 31 230-260 38-68 (135)
186 2jtt_C Calcyclin-binding prote 30.5 39 0.0013 17.6 2.1 26 36-61 7-32 (35)
187 4flb_A Regulation of nuclear P 30.0 1.4E+02 0.0049 20.9 9.1 90 240-338 17-112 (132)
188 4flb_A Regulation of nuclear P 26.9 1.6E+02 0.0056 20.5 9.4 99 271-376 9-111 (132)
189 2rg8_A Programmed cell death p 26.0 2E+02 0.0069 21.2 7.5 78 29-113 5-83 (165)
190 3l6a_A Eukaryotic translation 25.0 2.8E+02 0.0094 23.8 7.9 83 29-117 7-91 (364)
191 3l3f_X Protein DOA1, DOA1/UFD3 21.3 34 0.0012 29.3 1.4 99 279-377 208-326 (362)
192 2rg8_A Programmed cell death p 20.5 2.6E+02 0.009 20.6 8.2 104 225-336 6-113 (165)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=3.1e-44 Score=339.85 Aligned_cols=373 Identities=58% Similarity=0.946 Sum_probs=302.8
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 83 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~ 83 (382)
.+++|+++.||..|+++++.++...+++...+.++|.+.++++|++|.+|..++++++.++...+++.....++|.+.++
T Consensus 210 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 289 (588)
T 1b3u_A 210 NLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289 (588)
T ss_dssp HHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 34455556666666666666665555555555566666666666677777777777777666665554445566777777
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHH
Q 016814 84 LRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL 159 (382)
Q Consensus 84 l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 159 (382)
++|+++.||.+++.+++.++..++++ .+.+.++|.+..+++|+++.||..++.+++.++..+|.+...+.++|.+.
T Consensus 290 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~ 369 (588)
T 1b3u_A 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFL 369 (588)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 77777777777777777776666543 34556677777777777777777777777777776676655567888888
Q ss_pred HhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH
Q 016814 160 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 239 (382)
Q Consensus 160 ~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 239 (382)
.+++|+++.||..++.+++.+....+.+...+.++|.+.++++|++|++|..++..++.++..+|.+.+.+.++|.+...
T Consensus 370 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 449 (588)
T 1b3u_A 370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW 449 (588)
T ss_dssp HHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHG
T ss_pred HHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 88888888888888888888888877766667889999999999999999999999999999999888778899999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhcc
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK 319 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~ 319 (382)
+.|+++.||..|+.+++.++..+|.+++...++|.+.....++++.+|.+++.+++.+++.+|.+.+...++|.+...++
T Consensus 450 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 529 (588)
T 1b3u_A 450 LVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG 529 (588)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG
T ss_pred hcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999998877889999999999999999999999999999999988888999999999999
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 320 DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 320 d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
|++++||..++++++.+...+|.+.....++|.+.++.+|++++||..|.+|++.+.
T Consensus 530 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 530 DPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp CSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 999999999999999999999987777899999999999999999999999998764
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=7.9e-43 Score=330.20 Aligned_cols=379 Identities=21% Similarity=0.321 Sum_probs=348.9
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 82 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 82 (382)
..+++|+++.||..|++.++.++...+++...+.++|.+..+++|+++.+|..++.+++.++..++++.....++|.+.+
T Consensus 170 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 249 (588)
T 1b3u_A 170 RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ 249 (588)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999887777889999999999999999999999999999988876666679999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH----hHHHhhHHHH
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATIEQLLPIF 158 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l 158 (382)
+++|++|.||.+++++++.++...+++.+.+.++|.+..+++|+++.||..++.+++.++..++.+ ...+.++|.+
T Consensus 250 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l 329 (588)
T 1b3u_A 250 AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI 329 (588)
T ss_dssp HHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHH
Confidence 999999999999999999999999888777889999999999999999999999999999888765 4568899999
Q ss_pred HHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHH
Q 016814 159 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 238 (382)
Q Consensus 159 ~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 238 (382)
..+++|+++.||..++.+++.++..+|.+...+.++|.+..+++|+++.||..++..++.+...++.+...+.++|.+..
T Consensus 330 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~ 409 (588)
T 1b3u_A 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409 (588)
T ss_dssp HHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887666789999999999999999999999999999988887777889999999
Q ss_pred HhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc
Q 016814 239 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 318 (382)
Q Consensus 239 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l 318 (382)
.+.|++|.+|..++.+++.++..+|.+.+.+.++|.+...+.|+++.+|..|+.+++.++..+|.+.+...++|.+....
T Consensus 410 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~ 489 (588)
T 1b3u_A 410 LAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS 489 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTT
T ss_pred HhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 99999999999999999999999998877778999999999999999999999999999999998877889999999999
Q ss_pred cCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 319 KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 319 ~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
.|+++.+|..++.+++.+...++.+.+...++|.+.++++|++++||..++++++.+...+|+
T Consensus 490 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 490 GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred hCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 999999999999999999999998888899999999999999999999999999999876653
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.98 E-value=8.3e-30 Score=250.62 Aligned_cols=375 Identities=13% Similarity=0.130 Sum_probs=310.1
Q ss_pred hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc-------ccchH
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-------RMDLV 77 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-------~~~ll 77 (382)
.+.|+++.+|..++++++.+++...+ ..|+.++|.+.+.+.++++.+|+.++.+++.+++..+.... ...++
T Consensus 98 ~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il 176 (852)
T 4fdd_A 98 NIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMI 176 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHH
Confidence 35688999999999999999997643 56899999999999999999999999999999998876421 24589
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHh
Q 016814 78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQ 153 (382)
Q Consensus 78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ 153 (382)
|.+.++++|+++.||.+|++++..++...+.. .....+++.+...++|+++.||..++++++.+++..+... ..+.
T Consensus 177 ~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~ 256 (852)
T 4fdd_A 177 PKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN 256 (852)
T ss_dssp HHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999999999999999999887655443 1234678888889999999999999999999987655321 2357
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch----hhHhhhHHHHHHHHh-----------cC-----------CCch
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----DLLSQSLLPAIVELA-----------ED-----------RHWR 207 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~----~~~~~~llp~l~~~~-----------~d-----------~~~~ 207 (382)
+++.+.+.++|.++.||..++..+..+++.... ..+...++|.+.+.+ .| .+|.
T Consensus 257 l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~ 336 (852)
T 4fdd_A 257 IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN 336 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCC
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccch
Confidence 889999999999999999999998888753111 122356788887776 44 6799
Q ss_pred HHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcCcchH
Q 016814 208 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYL 285 (382)
Q Consensus 208 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~ 285 (382)
+|..+..+++.++...|.. ..+.++|.+...+.|++|.+|.+|+.+++.+++..+.. .+...++|.+...+.|+++.
T Consensus 337 vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~ 415 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 415 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999988854 45689999999999999999999999999999866532 35577899999999999999
Q ss_pred HHHHHHHHHHHhccccCh---hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCC
Q 016814 286 YRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP 360 (382)
Q Consensus 286 ~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~ 360 (382)
+|.+++++++.+++.++. ..+...++|.++..+.|+++.||..++.+++.+.+..+.. .+...+++.|..++++.
T Consensus 416 Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~ 495 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 495 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh
Confidence 999999999999987653 3467889999999999999999999999999999877653 35578888888888777
Q ss_pred CccHHhHHHHHHHHHHHHhcc
Q 016814 361 DVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 361 ~~~vr~~a~~al~~~~~~~~~ 381 (382)
+.+....+..+++.++..+|+
T Consensus 496 ~~~~~~~~~~ai~~l~~~~~~ 516 (852)
T 4fdd_A 496 QHKNLLILYDAIGTLADSVGH 516 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHHGG
T ss_pred ChHHHHHHHHHHHHHHHHhhh
Confidence 777777788999999877764
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.97 E-value=2.6e-28 Score=239.94 Aligned_cols=373 Identities=18% Similarity=0.166 Sum_probs=306.2
Q ss_pred cCCchHHHHHHHHHHHHHHhcc-C--hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814 7 SNDQDSVRLLAVEGCAALGKLL-E--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 83 (382)
Q Consensus 7 ~d~~~~vR~~a~~~l~~l~~~~-~--~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~ 83 (382)
++.++.+|..|+-.+....... . ++.....+.+.+.+.+.|+++.+|..++.+++.++...+. ..+.+++|.+.+.
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~ 136 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSL 136 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHH
Confidence 5678899999998888776531 1 2334566777777888899999999999999999987644 3467899999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCHHHH-------HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhh
Q 016814 84 LRDNEAEVRIAAAGKVTKFCRILNPELA-------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQL 154 (382)
Q Consensus 84 l~d~~~~VR~~a~~~l~~l~~~~~~~~~-------~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l 154 (382)
+.++++.+|+.++.+++.+++..+.... .+.++|.+.++++|+++.||..+++++..+....+... ..+.+
T Consensus 137 l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~ 216 (852)
T 4fdd_A 137 LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 216 (852)
T ss_dssp HSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999999999998765521 45688999999999999999999999999887654322 23578
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch----hhh
Q 016814 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFF 228 (382)
Q Consensus 155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~ 228 (382)
++.+.+.++|+++.+|..++.++..+.+..+.. ...+.+++.+...++|+++.+|..+++.+..+++.... ..+
T Consensus 217 l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~ 296 (852)
T 4fdd_A 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH 296 (852)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 888888999999999999999999998765432 12256788888889999999999999999888753211 123
Q ss_pred HHHHHHHHHHHh-----------cc-----------chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHH
Q 016814 229 DDKLGALCMQWL-----------QD-----------KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLY 286 (382)
Q Consensus 229 ~~~l~~~l~~~l-----------~d-----------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 286 (382)
.+.++|.+...+ .| .+|.+|.+|..+++.++...|. .....++|.+.+.+.+++|.+
T Consensus 297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~ 375 (852)
T 4fdd_A 297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVV 375 (852)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHH
Confidence 457888888776 44 5678999999999999998874 455678999999999999999
Q ss_pred HHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH---HHHHHhHHHHHHHhcCCCC
Q 016814 287 RMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPD 361 (382)
Q Consensus 287 r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~ 361 (382)
|.+|+.+++.+++.++.. .+...++|.++..++|+++.||..++.+++.++...+. ..+...+++.+.+.+.|++
T Consensus 376 R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 376 KESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999877643 46788999999999999999999999999999987754 2356788899999899999
Q ss_pred ccHHhHHHHHHHHHHHHhcc
Q 016814 362 VDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 362 ~~vr~~a~~al~~~~~~~~~ 381 (382)
+.||..|+.+++.+....++
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999877654
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.97 E-value=1.5e-27 Score=235.49 Aligned_cols=375 Identities=13% Similarity=0.164 Sum_probs=305.7
Q ss_pred hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhCCc-----ccccchHH
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE-----PTRMDLVP 78 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~-----~~~~~ll~ 78 (382)
.+.++++.+|..++++++.++....+...|+.++|.+.+.+.++ ++.+|..++..++.+++.++.+ .....+++
T Consensus 103 ~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~ 182 (861)
T 2bpt_A 103 ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI 182 (861)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHH
T ss_pred HHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Confidence 45677899999999999999997655456899999999999988 9999999999999999977654 23346888
Q ss_pred HHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--H
Q 016814 79 AYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--T 150 (382)
Q Consensus 79 ~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~ 150 (382)
.+...+.|+ ++.||.+++++++.+...++.. ...+.+++.+.+.+.++++.+|..+++++..++...+... .
T Consensus 183 ~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 262 (861)
T 2bpt_A 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPY 262 (861)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999987 8999999999999986544322 1234578888888999999999999999999987665321 2
Q ss_pred HH-hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-------------------hhHhhhHHHHHHHHhcC-------
Q 016814 151 IE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-------------------DLLSQSLLPAIVELAED------- 203 (382)
Q Consensus 151 ~~-~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-------------------~~~~~~llp~l~~~~~d------- 203 (382)
.. .+++.+...+.|.++.+|..++..+..+++.... ......++|.+...+.+
T Consensus 263 l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d 342 (861)
T 2bpt_A 263 MEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED 342 (861)
T ss_dssp HHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 34 7888888889999999999999999888765310 11225678888877753
Q ss_pred CCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhc
Q 016814 204 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN 280 (382)
Q Consensus 204 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~ 280 (382)
++|.+|..+...+..++..+|.. ..+.+++.+...+.+++|.+|++|+.+++.+++..+++ .+.+.++|.+...+.
T Consensus 343 ~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~ 421 (861)
T 2bpt_A 343 DDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN 421 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG
T ss_pred ccCcHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 56899999999999999988854 45678999999999999999999999999999766533 245678899999999
Q ss_pred CcchHHHHHHHHHHHHhccccCh----hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH------HHHHHhHH
Q 016814 281 NPHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SMVEKTIR 350 (382)
Q Consensus 281 ~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~------~~~~~~i~ 350 (382)
|+++.+|.+++++++.++..++. ..+...++|.++..++|+ +.+|..++.++..+...++. ..+...++
T Consensus 422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il 500 (861)
T 2bpt_A 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALV 500 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 99999999999999999987764 347789999999999987 89999999999999887651 13456778
Q ss_pred HHHHHhcC--CCCccHHhHHHHHHHHHHHHhcc
Q 016814 351 PCLVELTE--DPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 351 ~~l~~l~~--d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
+.+...+. |.+++||..+.++++.++...|+
T Consensus 501 ~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 88888776 45589999999999999887664
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.96 E-value=1.1e-26 Score=229.17 Aligned_cols=376 Identities=13% Similarity=0.164 Sum_probs=304.7
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccCh-------------------hhhhhhhhhhhhhhcc-------CCCHHHHHHHH
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEP-------------------QDCVAHILPVIVNFSQ-------DKSWRVRYMVA 57 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~ll~~l~~~~~-------d~~~~vR~~a~ 57 (382)
..++|.++.+|..|++.+..++..... ......++|.+.+.+. |.+|.+|..+.
T Consensus 273 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~ 352 (861)
T 2bpt_A 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAG 352 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHH
Confidence 346788999999999999998875310 1223567777776664 34589999999
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHH
Q 016814 58 NQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSAL 134 (382)
Q Consensus 58 ~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a 134 (382)
..++.++..++.. ....++|.+.+.++|++|.+|.+++.+++.+++..+++ .+.+.++|.+...++|+++.||..+
T Consensus 353 ~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a 431 (861)
T 2bpt_A 353 ACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETT 431 (861)
T ss_dssp HHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHHccHh-HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 9999999988843 34678899999999999999999999999999876633 3456788999999999999999999
Q ss_pred HHHHHhhccccCh----HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---h---hHhhhHHHHHHHHhc--
Q 016814 135 ASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D---LLSQSLLPAIVELAE-- 202 (382)
Q Consensus 135 ~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~---~~~~~llp~l~~~~~-- 202 (382)
+.+++.++..++. ....+.++|.+.+.++|+ +.||..++.++..+++..+. + .+.+.+++.+...++
T Consensus 432 ~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 432 AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 9999999877654 235678889999999886 99999999999999887651 2 333667888888887
Q ss_pred CCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhcc---------------chhHHHHHHHHHHHHHHHHhChH
Q 016814 203 DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD---------------KVYSIRDAAANNLKRLAEEFGPE 265 (382)
Q Consensus 203 d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~~~~~~~~~ 265 (382)
|.++.+|..+++.++.++...+... +.+.++|.+...+.+ ....+|..++.+++.++..+|.+
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4448999999999999998887643 234667777666552 35678999999999999988874
Q ss_pred --HHHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814 266 --WAMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 266 --~~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 340 (382)
.+...+++.+...+.+.++ .+|+.++.+++.++...|.. .+...++|.+...++++++.+|..++.+++.+...+
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 3566788889998988777 89999999999999888765 467889999999999999999999999999999888
Q ss_pred hHH--HHHHhHHHHHHHhcCCCC--ccHHhHHHHHHHHHHHHhcc
Q 016814 341 DQS--MVEKTIRPCLVELTEDPD--VDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 341 ~~~--~~~~~i~~~l~~l~~d~~--~~vr~~a~~al~~~~~~~~~ 381 (382)
|.. .+...+++.+.+.+.+++ +++|..+..+++.++..+|+
T Consensus 671 ~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 671 EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp GGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred chhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 753 345778888888777754 89999999999999988775
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.96 E-value=6.6e-27 Score=238.45 Aligned_cols=377 Identities=13% Similarity=0.150 Sum_probs=295.4
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc--------cccc
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--------TRMD 75 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~ 75 (382)
+.+.|+++.+|..|+.+++.++...++ ...+.+++.+.+.+.|+++.+|..++.+++.++..++... +...
T Consensus 55 ~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~ 133 (1230)
T 1u6g_C 55 KLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK 133 (1230)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHH
Confidence 345688999999999999999988766 4567788888888889989999999999999999888652 4567
Q ss_pred hHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---
Q 016814 76 LVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--- 149 (382)
Q Consensus 76 ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--- 149 (382)
++|.+.+.+.| +++.+|..++.++..+++..+.. .+.+.+++.+...+.|+++.||..++.+++.++...+...
T Consensus 134 llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~ 213 (1230)
T 1u6g_C 134 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVD 213 (1230)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTT
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999984 78999999999999998765532 2346778888888889889999999998888765543210
Q ss_pred --------------------------------------HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hH
Q 016814 150 --------------------------------------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LL 189 (382)
Q Consensus 150 --------------------------------------~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~ 189 (382)
..+.++|.+.+.++|+++.+|..++.+++.+....+.+ .+
T Consensus 214 ~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~ 293 (1230)
T 1u6g_C 214 LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPH 293 (1230)
T ss_dssp HHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHH
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHh
Confidence 11456777777788888889998888888888776653 23
Q ss_pred hhhHHHHHHHHhc-------------------------------------CCCchHHHHHHHHhHHHHhhhch--hhhHH
Q 016814 190 SQSLLPAIVELAE-------------------------------------DRHWRVRLAIIEYIPLLASQLGV--GFFDD 230 (382)
Q Consensus 190 ~~~llp~l~~~~~-------------------------------------d~~~~vr~~~~~~l~~l~~~~~~--~~~~~ 230 (382)
.+.++|.+.+.+. |..|++|..++..+..++...+. ..+.+
T Consensus 294 l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~ 373 (1230)
T 1u6g_C 294 VSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK 373 (1230)
T ss_dssp HHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 3556666654332 23588999999999998876553 23345
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---------------------HHHHhhhHHHHHhhhcCcchHHHHH
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------------------EWAMQHITPQVLEMINNPHYLYRMT 289 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------------------~~~~~~l~~~l~~~l~~~~~~~r~~ 289 (382)
.++|.+...+.|++..||..++.+++.++...+. +.+...++|.+.+.+.+++|.+|.+
T Consensus 374 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~ 453 (1230)
T 1u6g_C 374 TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQC 453 (1230)
T ss_dssp TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHH
Confidence 6678888888899999999999999999887642 2244566777777799999999999
Q ss_pred HHHHHHHhccccCh--hhhhhhhHHHHHhhccCCCc--cHHHHHHHHHHHHhhhhhHHH---HHHhHHHHHHHhcCCCCc
Q 016814 290 ILRAISLLAPVMGS--EITCSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVELTEDPDV 362 (382)
Q Consensus 290 a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~l~~d~~~ 362 (382)
++.+++.++..++. ..+...++|.++..+.|+++ .+|..++..++.+....+++. +...++|.+...+.|+++
T Consensus 454 ~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~ 533 (1230)
T 1u6g_C 454 CFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFY 533 (1230)
T ss_dssp HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccch
Confidence 99999999877653 24678999999999999876 899999999999987766553 567899999999999999
Q ss_pred cHHhHHHHHHHHHHHHhcc
Q 016814 363 DVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 363 ~vr~~a~~al~~~~~~~~~ 381 (382)
.||..|..+++.++..+|+
T Consensus 534 ~v~~~al~~l~~l~~~~~~ 552 (1230)
T 1u6g_C 534 KITSEALLVTQQLVKVIRP 552 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999988775
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.96 E-value=2.1e-26 Score=234.77 Aligned_cols=376 Identities=14% Similarity=0.118 Sum_probs=300.5
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHH
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAY 80 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l 80 (382)
..+.|+++.||..|+.+++.++...+... .+.++|.+.+.+. +.++.+|..++++++.++...+.. .+...++|.+
T Consensus 182 ~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~l 260 (1230)
T 1u6g_C 182 PQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLV 260 (1230)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45678889999999999999999876543 4556666665554 334678999999999999987763 2346799999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcC----------------------------------
Q 016814 81 VRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSS---------------------------------- 124 (382)
Q Consensus 81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~---------------------------------- 124 (382)
.+.+.|+++.||..++.+++.+++.++.+ .+.+.++|.+...+.
T Consensus 261 l~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1230)
T 1u6g_C 261 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 340 (1230)
T ss_dssp HHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccc
Confidence 99999999999999999999999987653 355677777766542
Q ss_pred ---CCchHHHHHHHHHHHhhccccCh--HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-------------
Q 016814 125 ---DSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI------------- 186 (382)
Q Consensus 125 ---d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~------------- 186 (382)
|..|.||..++.++..++...+. ....+.++|.+...+.|.++.||..++.++..+....+.
T Consensus 341 ~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 420 (1230)
T 1u6g_C 341 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420 (1230)
T ss_dssp ----CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------
T ss_pred cccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccccc
Confidence 22467899999999999886664 345578889999999999999999999999988776542
Q ss_pred --------hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch--hhhHHHHHHHHHHHhccchh--HHHHHHHHH
Q 016814 187 --------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVY--SIRDAAANN 254 (382)
Q Consensus 187 --------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~ 254 (382)
+.+.+.++|.+.+.++|++|++|..++..++.++...+. ..+.+.++|.+...+.|+.+ ++|..++..
T Consensus 421 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~ 500 (1230)
T 1u6g_C 421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSC 500 (1230)
T ss_dssp CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred ccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 223466778888889999999999999999999887543 23457899999999999875 999999999
Q ss_pred HHHHHHHhChHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh---------hhhhhhhHHHHHhhc--cC
Q 016814 255 LKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---------EITCSRLLPVVINAS--KD 320 (382)
Q Consensus 255 l~~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------~~~~~~~l~~l~~~l--~d 320 (382)
++.+.+..|++. +...++|.+...+.|+++.+|..++.+++.+++.++. ..+.+.++|.++..+ .|
T Consensus 501 l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d 580 (1230)
T 1u6g_C 501 LYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAAD 580 (1230)
T ss_dssp HHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccC
Confidence 999998887763 5678999999999999999999999999999887765 257789999999998 77
Q ss_pred CCccHHHHHHHHHHHHhhhhhHH------------------------------------------HHHHhHHHHHHHhcC
Q 016814 321 RVPNIKFNVAKVLQSLIPIVDQS------------------------------------------MVEKTIRPCLVELTE 358 (382)
Q Consensus 321 ~~~~vR~~a~~~l~~i~~~~~~~------------------------------------------~~~~~i~~~l~~l~~ 358 (382)
.++.+|..++.+++.+....|.. .+...++|.+.+.+.
T Consensus 581 ~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~ 660 (1230)
T 1u6g_C 581 IDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH
Confidence 88899999999999998876532 112455666666677
Q ss_pred CCCccHHhHHHHHHHHHHHHhc
Q 016814 359 DPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 359 d~~~~vr~~a~~al~~~~~~~~ 380 (382)
|.++.+|.+++.+++.+....+
T Consensus 661 ~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 661 KNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCC
T ss_pred hCCHHHHHHHHHHHHHHHhccc
Confidence 8889999999999999988765
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.96 E-value=2.9e-26 Score=226.65 Aligned_cols=374 Identities=17% Similarity=0.192 Sum_probs=302.3
Q ss_pred hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC--CHHHHHHHHHHHHHHHHHhCCc---ccccchHHH
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE---PTRMDLVPA 79 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~ 79 (382)
.+.++++.+ ..++.+++.++....+...|+.++|.+.+.+.++ ++.+|..++++++.+++..+.+ .....+++.
T Consensus 98 ~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~ 176 (876)
T 1qgr_A 98 TLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 176 (876)
T ss_dssp HTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHH
T ss_pred HhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHH
Confidence 345666777 8899999999987656567999999999999988 9999999999999999876532 223457888
Q ss_pred HHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HH
Q 016814 80 YVRLLRDN--EAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TI 151 (382)
Q Consensus 80 l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~ 151 (382)
+.+.+.++ ++.||..+++++..++..++.. ...+.+++.+.+.++|.++.+|..+++++..++...++.. ..
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 256 (876)
T 1qgr_A 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM 256 (876)
T ss_dssp HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88888887 6899999999999987654432 2223578888888899999999999999999987655321 23
Q ss_pred H-hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--------------------h---hHhhhHHHHHHHHhc-----
Q 016814 152 E-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------------------D---LLSQSLLPAIVELAE----- 202 (382)
Q Consensus 152 ~-~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--------------------~---~~~~~llp~l~~~~~----- 202 (382)
. .+++.+...+.+.++.+|..++..+..+++.... . ...+.++|.+.+.+.
T Consensus 257 ~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d 336 (876)
T 1qgr_A 257 GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN 336 (876)
T ss_dssp TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccc
Confidence 4 7888888888999999999999888877654210 0 012567777777764
Q ss_pred --CCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHh
Q 016814 203 --DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLE 277 (382)
Q Consensus 203 --d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~ 277 (382)
+++|.+|..+...++.++..++.. ..+.++|.+...+.|++|.+|.+++.+++.+++..+++ .+...++|.+..
T Consensus 337 ~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~ 415 (876)
T 1qgr_A 337 DDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE 415 (876)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCcHh-hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 568999999999999999988854 45688999999999999999999999999999877633 355678999999
Q ss_pred hhcCcchHHHHHHHHHHHHhccccCh----hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh------------
Q 016814 278 MINNPHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD------------ 341 (382)
Q Consensus 278 ~l~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~------------ 341 (382)
.+.|+++.+|..|+.+++.+++.++. ..+...++|.++..+.|+ +.||..++.+++.+....+
T Consensus 416 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~ 494 (876)
T 1qgr_A 416 LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEP 494 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999999987764 357789999999999985 8899999999999998765
Q ss_pred ----HHHHHHhHHHHHHHhcCCC---CccHHhHHHHHHHHHHHHhcc
Q 016814 342 ----QSMVEKTIRPCLVELTEDP---DVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 342 ----~~~~~~~i~~~l~~l~~d~---~~~vr~~a~~al~~~~~~~~~ 381 (382)
-..+...++|.+..++.+. +..+|..+.++++.++...|.
T Consensus 495 ~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 495 ATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp CCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred cchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 1235578899999887765 468999999999999887764
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.95 E-value=1.1e-25 Score=206.48 Aligned_cols=345 Identities=15% Similarity=0.147 Sum_probs=273.3
Q ss_pred CchHHHHHHHHHHHHHHhcc--------------ChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 016814 9 DQDSVRLLAVEGCAALGKLL--------------EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 74 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~--------------~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~ 74 (382)
.++.+|..|+..+..+.+.. -++.....+...+.+.+.++++.+ ..++.+++.++....+...+.
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~ 127 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP 127 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH
Confidence 37899999999999886432 112334456666667777888888 999999999998876544568
Q ss_pred chHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCC--chHHHHHHHHHHHhhccccCh
Q 016814 75 DLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 75 ~ll~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~ 147 (382)
.++|.+.+.+.++ ++.+|..++.+++.+++...++ .+.+.+++.+..+++|+ ++.||..++++++.+...++.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 8999999999999999876332 33456888899999988 799999999999997765442
Q ss_pred H----hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hHhh-hHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814 148 D----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLA 220 (382)
Q Consensus 148 ~----~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~-~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 220 (382)
. ...+.+++.+.+.+.+.++.+|..+++++..+....+.. .+.. .+++.+...+++.+..+|..+++.+..++
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 2 123456888888899999999999999999998766532 2235 78888888889999999999999998887
Q ss_pred hhh-------------------c-hhh---hHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHhChHHHHhh
Q 016814 221 SQL-------------------G-VGF---FDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQH 270 (382)
Q Consensus 221 ~~~-------------------~-~~~---~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 270 (382)
... . ... +.+.++|.+...+. |.+|.+|.+|..+++.++..+| +.....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~ 366 (462)
T 1ibr_B 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPH 366 (462)
T ss_dssp HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHH
T ss_pred HHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHH
Confidence 642 0 011 23568888887774 3468999999999999999998 455677
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH----
Q 016814 271 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---- 343 (382)
Q Consensus 271 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---- 343 (382)
++|.+.+.+.+++|.+|.+++.+++.+++.++.+ .+...++|.++..++|+++.||..|+.+++.+...+++.
T Consensus 367 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~ 446 (462)
T 1ibr_B 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (462)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCST
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 8999999999999999999999999999876632 356789999999999999999999999999999988763
Q ss_pred HHHHhHHHHHHH
Q 016814 344 MVEKTIRPCLVE 355 (382)
Q Consensus 344 ~~~~~i~~~l~~ 355 (382)
.+...+++.|.+
T Consensus 447 ~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 447 VYLAPLLQCLIE 458 (462)
T ss_dssp TTHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 234555555544
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.95 E-value=8.8e-25 Score=216.01 Aligned_cols=369 Identities=15% Similarity=0.128 Sum_probs=294.6
Q ss_pred CchHHHHHHHHHHHHHHhccC--------------hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 016814 9 DQDSVRLLAVEGCAALGKLLE--------------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 74 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~~--------------~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~ 74 (382)
.++.+|..|+..+........ .+.....+.+.+.+.+.++++.+ ..++.+++.++........+.
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~ 127 (876)
T 1qgr_A 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWP 127 (876)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCT
T ss_pred CCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccH
Confidence 468999999999888653210 12233445555777777777788 999999999998765545578
Q ss_pred chHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCC--chHHHHHHHHHHHhhccccCh
Q 016814 75 DLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 75 ~ll~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~ 147 (382)
.++|.+.+.+.++ ++.+|..++.+++.+++.++++ ...+.+++.+...+.++ ++.+|..++++++.++..++.
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998 8999999999999999887654 23456778888888887 689999999999998876553
Q ss_pred Hh----HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hHhh-hHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814 148 DA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLA 220 (382)
Q Consensus 148 ~~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~-~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 220 (382)
.. ..+.+++.+.+.+.+.++.+|..+++++..+....+.. .... .+++.+.....+.+..+|..+++.+..++
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 21 12457888888899999999999999999988765532 1224 78888888888999999999999988887
Q ss_pred hhhc--------------------hhh---hHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHhChHHHHhh
Q 016814 221 SQLG--------------------VGF---FDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQH 270 (382)
Q Consensus 221 ~~~~--------------------~~~---~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 270 (382)
.... ... ..+.++|.+...+. |.+|.+|.+|..+++.++..+|. .....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~ 366 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPH 366 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHH
T ss_pred HHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHH
Confidence 6421 011 12567788877774 45789999999999999998874 44567
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH----H
Q 016814 271 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----S 343 (382)
Q Consensus 271 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~----~ 343 (382)
++|.+...+.|++|.+|.+++.+++.++..++++ .+...++|.++..++|+++.||..|+.+++.+....+. .
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 8899999999999999999999999999888733 46678999999999999999999999999999988764 2
Q ss_pred HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 344 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 344 ~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
.+...+++.+...+.|+ +.||..+++++..++...+
T Consensus 447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence 45678888898888885 8999999999999998765
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.95 E-value=6.6e-25 Score=200.60 Aligned_cols=373 Identities=13% Similarity=0.067 Sum_probs=287.4
Q ss_pred hhccCCchHHHHHHHHHHHHHHhcc-Ch--h-hhhh-hhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhCC---ccccc
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLL-EP--Q-DCVA-HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP---EPTRM 74 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~-~~--~-~~~~-~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~---~~~~~ 74 (382)
++++++++.+|..|+..+..+.... .+ . .... .++|.+.+.+.++ ++.+|..++..+..++..-.+ .....
T Consensus 27 ~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 106 (450)
T 2jdq_A 27 EMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA 106 (450)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC
Confidence 3457889999999999999986522 21 1 2233 6888888888887 899999999999998852111 11224
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCC-CchHHHHHHHHHHHhhccccC---h
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG---K 147 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---~ 147 (382)
..+|.+.+++.++++.+|..|+.+|++++.... .......++|.+..++++ .++.+|..++.+++.++...+ .
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 186 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE 186 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 689999999999999999999999999986432 112334688999999985 789999999999999986431 1
Q ss_pred HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814 148 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 224 (382)
Q Consensus 148 ~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 224 (382)
......++|.+.+++.++++.+|..++.++..++..... ......++|.+..++.++++.+|..++..++.++...+
T Consensus 187 ~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 266 (450)
T 2jdq_A 187 FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD 266 (450)
T ss_dssp GGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh
Confidence 223478899999999999999999999999998764221 11224578999999999999999999999999876432
Q ss_pred h---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc
Q 016814 225 V---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 298 (382)
Q Consensus 225 ~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 298 (382)
. ......++|.+..++.++++.+|..|+.+++.++..... ......++|.+...+.++++.+|..++++++.++
T Consensus 267 ~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 267 IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346 (450)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 2 122235889999999999999999999999999852111 1123578999999999999999999999999998
Q ss_pred cccChh----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---------HHHHhH-----HHHHHHhcCCC
Q 016814 299 PVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MVEKTI-----RPCLVELTEDP 360 (382)
Q Consensus 299 ~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~i-----~~~l~~l~~d~ 360 (382)
....++ .....++|.++..+.++++.+|..++.+|..+....... .+...+ ++.+..+.+++
T Consensus 347 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~ 426 (450)
T 2jdq_A 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE 426 (450)
T ss_dssp HHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH
T ss_pred cCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC
Confidence 654433 223568999999999999999999999999998754321 122223 67788888889
Q ss_pred CccHHhHHHHHHHHHH
Q 016814 361 DVDVRFFATQAIQSID 376 (382)
Q Consensus 361 ~~~vr~~a~~al~~~~ 376 (382)
+.+|+..|..++..+.
T Consensus 427 ~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 427 NQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC
Confidence 9999999998887764
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=9.7e-25 Score=203.38 Aligned_cols=372 Identities=11% Similarity=0.063 Sum_probs=290.7
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccCh----hhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhC---Ccccccc
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---PEPTRMD 75 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~---~~~~~~~ 75 (382)
.+++++++.+|..|+..+..++..... ......++|.+.+++.++ ++.+|..++.+|+.++.... .......
T Consensus 94 ~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g 173 (530)
T 1wa5_B 94 QQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD 173 (530)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence 345677899999999999998765322 122346889999999887 89999999999999885221 1112245
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC---hHh
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDA 149 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~ 149 (382)
.+|.+++++.++++.||..|+.+|++++...+ .......++|.+..++.+.++.+|..++.++..++..-+ ...
T Consensus 174 ~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 253 (530)
T 1wa5_B 174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 253 (530)
T ss_dssp CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH
Confidence 79999999999999999999999999986421 123345789999999999999999999999999986431 223
Q ss_pred HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--h-hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--
Q 016814 150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-- 224 (382)
Q Consensus 150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-- 224 (382)
....++|.+..++.++++.+|..++.+++.++...+. . .....++|.+..++.++++.+|..++..++.++...+
T Consensus 254 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 333 (530)
T 1wa5_B 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQ 333 (530)
T ss_dssp HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHH
Confidence 4478899999999999999999999999998754221 1 1223678999999999999999999999999875322
Q ss_pred -hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc
Q 016814 225 -VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP 299 (382)
Q Consensus 225 -~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 299 (382)
.......++|.+..++.++++.+|..|+.+++.++.. ..+. +...++|.+...+.++++.+|..++++++.++.
T Consensus 334 ~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 334 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 1223346889999999999999999999999999852 2221 235688999999999999999999999999987
Q ss_pred ccCh--h----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--------------HHHHhHHHHHHHhcCC
Q 016814 300 VMGS--E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLVELTED 359 (382)
Q Consensus 300 ~~~~--~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--------------~~~~~i~~~l~~l~~d 359 (382)
..+. + .....++|.++.++.++++.+|..++.+|..+....... ......++.|..+.++
T Consensus 413 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~ 492 (530)
T 1wa5_B 413 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN 492 (530)
T ss_dssp HTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC
T ss_pred cCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcC
Confidence 6443 2 233468999999999999999999999999998754321 1123457888889999
Q ss_pred CCccHHhHHHHHHHHHH
Q 016814 360 PDVDVRFFATQAIQSID 376 (382)
Q Consensus 360 ~~~~vr~~a~~al~~~~ 376 (382)
++.+|+..|..++..+.
T Consensus 493 ~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 493 ENDKIYEKAYKIIETYF 509 (530)
T ss_dssp SCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 99999999988887654
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=2.9e-25 Score=203.65 Aligned_cols=371 Identities=13% Similarity=0.095 Sum_probs=285.7
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHh------------C--Ccc
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV------------G--PEP 71 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~------------~--~~~ 71 (382)
+.++++.+|+.|-+.+..+...- ...++..++.++.. .+.++.+|+.++..|.++...- . ++.
T Consensus 10 ~~s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~ 86 (462)
T 1ibr_B 10 TVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDAN 86 (462)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHH
Confidence 34678899999999998865421 12233333333332 2347899999999999886321 1 122
Q ss_pred cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCC--chHHHHHHHHHHHhhccccCh--
Q 016814 72 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK-- 147 (382)
Q Consensus 72 ~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~-- 147 (382)
.+..+-..+++.+.++++.+ ..++.+++.++....++.....++|.+...+++. ++.+|..++.+++.+++....
T Consensus 87 ~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (462)
T 1ibr_B 87 ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (462)
T ss_dssp HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh
Confidence 23456777788888888888 8899999999887544322357889999999888 899999999999999875532
Q ss_pred -HhHHHhhHHHHHHhhcCC--ChHHHHHHHHhhHHhhhhhchh----hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814 148 -DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 220 (382)
Q Consensus 148 -~~~~~~l~~~l~~~l~d~--~~~vr~~~~~~l~~~~~~~~~~----~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 220 (382)
....+.+++.+...++|+ ++.||..++++++.+....+.. .+.+.+++.+.....++++.+|..+++.+..++
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 223467889999999998 7999999999999876544321 122446888888889999999999999999999
Q ss_pred hhhchh--hhHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHh------------------C--h---HHHHhhhHHH
Q 016814 221 SQLGVG--FFDD-KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF------------------G--P---EWAMQHITPQ 274 (382)
Q Consensus 221 ~~~~~~--~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~------------------~--~---~~~~~~l~~~ 274 (382)
...+.. .+.+ .+++.+...++|.+..+|..++..+..+++.. . . +.+...++|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 876542 1234 78888888889999999999999999988753 0 0 1133668888
Q ss_pred HHhhhc-------CcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---H
Q 016814 275 VLEMIN-------NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---M 344 (382)
Q Consensus 275 l~~~l~-------~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~ 344 (382)
+++.+. +.+|.+|.+|..++..++..+| +.....++|.+...++|+++.+|.+++.+++.++...+++ .
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 887774 3468999999999999999998 4577889999999999999999999999999999765422 2
Q ss_pred HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 345 VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 345 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
....++|.+...+.|+++.||..|+.+++.++..+++
T Consensus 405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 3467999999999999999999999999999998765
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=2.6e-23 Score=190.04 Aligned_cols=341 Identities=13% Similarity=0.066 Sum_probs=269.0
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----cccc-chHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhC---H
Q 016814 38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRM-DLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILN---P 108 (382)
Q Consensus 38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~-~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~---~ 108 (382)
+|.+.+.++++++.+|..++..+..+....... .... .++|.+++++.++ ++.+|..++.++.+++..-. .
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 777778888899999999999999987532221 1223 6899999999988 89999999999999876321 1
Q ss_pred HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhhcC-CChHHHHHHHHhhHHhhhhh
Q 016814 109 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVI 184 (382)
Q Consensus 109 ~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d-~~~~vr~~~~~~l~~~~~~~ 184 (382)
.......+|.+.++++++++.+|..++.+|+.++..... + .....++|.+.+++++ .++.+|..++.+++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 123357899999999999999999999999999864321 1 1225688999999985 78999999999999998643
Q ss_pred ch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 016814 185 GI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 258 (382)
Q Consensus 185 ~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 258 (382)
++ ......++|.+..++.++++.+|..++..+..++..... ......++|.+..++.++++.+|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11 223367899999999999999999999999998764321 122235788899999999999999999999999
Q ss_pred HHHhCh--H-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHH
Q 016814 259 AEEFGP--E-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKV 332 (382)
Q Consensus 259 ~~~~~~--~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~ 332 (382)
+...+. + .....++|.+..++.++++.+|..++.+++.++...... .....++|.++..+.++++.+|..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 864221 1 122368999999999999999999999999998643221 1235789999999999999999999999
Q ss_pred HHHHhhhhhHH----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 333 LQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 333 l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
|+.+.....++ .....++|.|..++.+++++||..|..++..+...
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99998753322 23457899999999999999999999999988764
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=6.9e-23 Score=190.92 Aligned_cols=372 Identities=12% Similarity=0.080 Sum_probs=289.2
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccC-h---hhhhhhhhhhhhhhccCCC-HHHHHHHHHHHHHHHHHhCC---cccccc
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLE-P---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP---EPTRMD 75 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~-~---~~~~~~ll~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~ 75 (382)
.++.++++.+|..|+..+..++.... + ......++|.+.+++.+++ +.+|..++.+|++++..-.. ......
T Consensus 81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g 160 (528)
T 4b8j_A 81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 160 (528)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence 44567789999999999999977554 1 2234568898999998876 99999999999999862111 112235
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHHhhhHhhhhhc-CCCchHHHHHHHHHHHhhccccC--hHh
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLG--KDA 149 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~--~~~ 149 (382)
.+|.+++++.++++.||..|+.+|++++..... .......+|.+..++ .+.++.++..++.++..++...+ ...
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 240 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 899999999999999999999999999864221 122345788999988 78899999999999999986532 223
Q ss_pred HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch-
Q 016814 150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV- 225 (382)
Q Consensus 150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~- 225 (382)
....++|.+.+++.++++.++..++.+++.++...+.. .....++|.+..++.++++.++..++..++.++.....
T Consensus 241 ~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 320 (528)
T 4b8j_A 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ 320 (528)
T ss_dssp HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH
Confidence 34778999999999999999999999999987543211 11235789999999999999999999999998763221
Q ss_pred --hhhHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHhChH----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc
Q 016814 226 --GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLA 298 (382)
Q Consensus 226 --~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 298 (382)
..+...++|.+..++.++ ++.+|..|+.+++.++.. ..+ .+...++|.+..++.++++.+|..|+.+++.++
T Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNAT 399 (528)
T ss_dssp HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 122345789999999998 999999999999999862 222 133468899999999889999999999999998
Q ss_pred cccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--------------HHHHhHHHHHHHhcCCC
Q 016814 299 PVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLVELTEDP 360 (382)
Q Consensus 299 ~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--------------~~~~~i~~~l~~l~~d~ 360 (382)
...+.+. ....+++.+..++.++++.++..++.+|..+....... ......++.+..+.+++
T Consensus 400 ~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~ 479 (528)
T 4b8j_A 400 SGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHD 479 (528)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCS
T ss_pred cCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCC
Confidence 7643331 23468899999999999999999999999998654321 11234567788888999
Q ss_pred CccHHhHHHHHHHHHH
Q 016814 361 DVDVRFFATQAIQSID 376 (382)
Q Consensus 361 ~~~vr~~a~~al~~~~ 376 (382)
+.+++..|...+..+.
T Consensus 480 ~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 480 NNEIYEKAVKILEAYW 495 (528)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHC
Confidence 9999999999888764
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=6.4e-23 Score=191.12 Aligned_cols=344 Identities=12% Similarity=0.075 Sum_probs=271.0
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhC--
Q 016814 35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILN-- 107 (382)
Q Consensus 35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~-- 107 (382)
...+|.+.+.+.++++.+|..++..|..+....... .....++|.+++++.++ ++.+|..|+.+|++++....
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 345777777888889999999999999886533222 12246899999999997 89999999999999976321
Q ss_pred -HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 108 -PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 108 -~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
........+|.+..+++++++.+|..++.+|+.++...+. ......++|.+..++.+.++.++..++.++..++..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 2233357889999999999999999999999999864221 112357889999999999999999999999999854
Q ss_pred hc---hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 016814 184 IG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 257 (382)
Q Consensus 184 ~~---~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 257 (382)
-+ .......++|.+..++.++++.+|..++..+..++...+. ......++|.+..++.++++.+|..|+.+++.
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 31 1223367899999999999999999999999999854221 12223578999999999999999999999999
Q ss_pred HHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHH
Q 016814 258 LAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAK 331 (382)
Q Consensus 258 ~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~ 331 (382)
++...+. ......++|.+..++.++++.+|..|+++++.++...... .....++|.++..+.++++.+|..++.
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 9853211 1233568999999999999999999999999998643221 123578999999999999999999999
Q ss_pred HHHHHhhhhhH--H----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 332 VLQSLIPIVDQ--S----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 332 ~l~~i~~~~~~--~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
+|+.+....++ + .....++|.|..++.+++++||..+..++..+...
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 99999875433 2 23456899999999999999999999999988764
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.90 E-value=6.4e-21 Score=179.22 Aligned_cols=359 Identities=15% Similarity=0.162 Sum_probs=268.7
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccc-cchHHHHH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-MDLVPAYV 81 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~l~ 81 (382)
.+-++|+++.+|..|+++++.+. .....+.+.|.+.+++.|+++.||+.|+.++..+.... ++... ..++|.+.
T Consensus 92 ~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 92 VKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLR 166 (591)
T ss_dssp GGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHH
Confidence 45578999999999998887764 34567788888999999999999999999999999843 33322 25789999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhC--------HH--------------------------------HHHHhhhHhhhh
Q 016814 82 RLLRDNEAEVRIAAAGKVTKFCRILN--------PE--------------------------------LAIQHILPCVKE 121 (382)
Q Consensus 82 ~~l~d~~~~VR~~a~~~l~~l~~~~~--------~~--------------------------------~~~~~il~~l~~ 121 (382)
++++|+++.||.+|+.+|..++..-+ +. .....+++.+..
T Consensus 167 ~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~ 246 (591)
T 2vgl_B 167 DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTP 246 (591)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTT
T ss_pred HHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999999999999876322 00 011346677777
Q ss_pred hcCCCchHHHHHHHHHHHhhcccc--ChHh---HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch----------
Q 016814 122 LSSDSSQHVRSALASVIMGMAPLL--GKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---------- 186 (382)
Q Consensus 122 ~~~d~~~~vr~~a~~~l~~l~~~~--~~~~---~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---------- 186 (382)
++++.++.|+..+++++..+...+ +++. ..+.+.+.+..+++ +++++|..++.++..+....+.
T Consensus 247 ~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~ 325 (591)
T 2vgl_B 247 RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFF 325 (591)
T ss_dssp CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS
T ss_pred HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhhe
Confidence 889999999999999999987644 2121 22455566665554 6889999999998887653110
Q ss_pred ----h------------------hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccch
Q 016814 187 ----D------------------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV 244 (382)
Q Consensus 187 ----~------------------~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 244 (382)
+ .-.+.+++.+...+.+.++.+|..++..++.++..+++. .+.+++.+..++.+..
T Consensus 326 ~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~ 403 (591)
T 2vgl_B 326 VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKV 403 (591)
T ss_dssp CCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCC
T ss_pred eccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccc
Confidence 0 001356777778888889999999999999999876532 3578889999999999
Q ss_pred hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCc
Q 016814 245 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP 323 (382)
Q Consensus 245 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~ 323 (382)
..++..++..+..++...+.. .+..++.+.+.+.+ ..+.+|.++++++|..+..... ...++..+++.+.+.++
T Consensus 404 ~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~ 478 (591)
T 2vgl_B 404 NYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDEST 478 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCH
T ss_pred hHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCH
Confidence 999999999999988765432 34567778887764 4578899999999998876643 24666777777778889
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCC-CCccHHhHHHHHHHHH
Q 016814 324 NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED-PDVDVRFFATQAIQSI 375 (382)
Q Consensus 324 ~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~~~ 375 (382)
.||..++.++.+++...+.. ....+...+.....| .+.+||..|...+..+
T Consensus 479 ~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 479 QVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 99999999999998866532 123344444445556 6789999998776544
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.90 E-value=7.4e-22 Score=183.97 Aligned_cols=342 Identities=15% Similarity=0.109 Sum_probs=267.6
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCH---
Q 016814 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNP--- 108 (382)
Q Consensus 37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~--- 108 (382)
-+|.+.+.+.++++.+|..++..+..++....... ....++|.+++++.+++ +.+|..|+.+|++++.....
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 36777777888899999999999999876443221 23468999999999887 99999999999999873211
Q ss_pred HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhh-cCCChHHHHHHHHhhHHhhhhh
Q 016814 109 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVI 184 (382)
Q Consensus 109 ~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~~~~~~ 184 (382)
.......+|.+..++.++++.+|..++.+|+.++..-+. . ......+|.+..++ .+.++.++..++.++..++...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 123346899999999999999999999999999853221 1 12245788888888 6788999999999999998653
Q ss_pred ch--hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814 185 GI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 259 (382)
Q Consensus 185 ~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 259 (382)
+. ......++|.+..++.++++.++..++..+..++..... ......++|.+..++.++++.+|..|+.+++.++
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 21 223367899999999999999999999999998754322 1223357889999999999999999999999998
Q ss_pred HHhCh---HHHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhccccCh---hhhhhhhHHHHHhhccCCCccHHHHHHHH
Q 016814 260 EEFGP---EWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKV 332 (382)
Q Consensus 260 ~~~~~---~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~ 332 (382)
..... ......++|.+..++.++ ++.+|..|+++++.++..... ......++|.++.++.+.++.+|..++.+
T Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 63211 112345789999999998 899999999999999863221 12344788999999999999999999999
Q ss_pred HHHHhhhhhHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 333 LQSLIPIVDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 333 l~~i~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
|+.+....+++. ....+++.|..++.+++++++..+..++..+...
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV 444 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999987633321 2357889999999999999999999999998764
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=2.7e-20 Score=173.63 Aligned_cols=373 Identities=14% Similarity=0.049 Sum_probs=267.2
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccCh--hh-hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhC---Ccccccch
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEP--QD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDL 76 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l 76 (382)
..+++++++.+|..|+..+..++...+. .. .....+|.+.+++.++++.+|..++.++..++..-. ........
T Consensus 107 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~ 186 (529)
T 1jdh_A 107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 4567888999999999999999886432 11 235688999999999999999999999998874110 01122346
Q ss_pred HHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814 77 VPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 153 (382)
Q Consensus 77 l~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 153 (382)
+|.+++++.+.+ ..++.++..++.+++..-.. .......+|.+.+++++.++.++..++.++..++...+.......
T Consensus 187 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 266 (529)
T 1jdh_A 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 266 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHh
Confidence 888888887655 45677778888887653221 123346889999999999999999999999999876544333467
Q ss_pred hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc--hhh-HhhhHHHHHHHHhcC--CCchHHHHHHHHhHHHHhhhch---
Q 016814 154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDL-LSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV--- 225 (382)
Q Consensus 154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~--~~~-~~~~llp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~--- 225 (382)
++|.+.+++.++++.+|..++.+++.++..-. ... .....+|.+.+++.+ +++.++..++..++.++...+.
T Consensus 267 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 346 (529)
T 1jdh_A 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 346 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHH
Confidence 88999999999999999999999999865321 111 123467888887764 4489999999999998653222
Q ss_pred ---hhhHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH---
Q 016814 226 ---GFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAISL--- 296 (382)
Q Consensus 226 ---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~--- 296 (382)
.......+|.+..++.+++ +.+|..++.+++.++..-.. ......++|.+.+.+.++++.+|..++++++.
T Consensus 347 ~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~ 426 (529)
T 1jdh_A 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------C
T ss_pred HHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhh
Confidence 1222345788999999876 69999999999998852211 12335688999999888777777766555443
Q ss_pred -------------------hccccCh--hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh--HHHHHHhHHHHH
Q 016814 297 -------------------LAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCL 353 (382)
Q Consensus 297 -------------------l~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~--~~~~~~~i~~~l 353 (382)
++..... .......+|.+..++.|+++++|..++.++..+...-. ........++.|
T Consensus 427 ~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L 506 (529)
T 1jdh_A 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506 (529)
T ss_dssp BTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred hccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH
Confidence 3321110 01234567999999999999999999999999874311 112345778999
Q ss_pred HHhcCCCCccHHhHHHHHHHHH
Q 016814 354 VELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 354 ~~l~~d~~~~vr~~a~~al~~~ 375 (382)
..+.++++++||..|..++..+
T Consensus 507 ~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 507 TELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999876
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.88 E-value=4e-20 Score=173.86 Aligned_cols=355 Identities=16% Similarity=0.108 Sum_probs=221.4
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 83 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~ 83 (382)
+++++++..+|+.+--.+..+++.. + +..-.+.+.+.+-++|+++.+|..|+++++.+. .......++|.+.++
T Consensus 56 ~l~~s~~~~~Krl~yl~l~~~~~~~-~-e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~ 129 (591)
T 2vgl_B 56 NCMQTDNLELKKLVYLYLMNYAKSQ-P-DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKC 129 (591)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHS-H-HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccC-c-hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHH
Confidence 3567778888888777777776632 1 222334566677778888888888888877654 333345677778888
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH---hHHHhhHHHHHH
Q 016814 84 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLS 160 (382)
Q Consensus 84 l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~ 160 (382)
+.|+++.||+.|+.++..+.+..+.......++|.+.++++|+++.|+..++.+++.++..-+.. ......++.+.+
T Consensus 130 L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~ 209 (591)
T 2vgl_B 130 LKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLT 209 (591)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHH
Confidence 88888888888888888887743321112357788888888888888888888888887654311 011233444555
Q ss_pred hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh--chhhh---HHHHHHH
Q 016814 161 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFF---DDKLGAL 235 (382)
Q Consensus 161 ~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~---~~~l~~~ 235 (382)
.+.+.++-.+..++..++.+... + +.....+++.+..++++.++.|+..+++.+..+.... +++.. .+.+.+.
T Consensus 210 ~l~~~~~~~q~~il~~l~~l~~~-~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 287 (591)
T 2vgl_B 210 ALNECTEWGQIFILDCLSNYNPK-D-DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPP 287 (591)
T ss_dssp HHHHCCHHHHHHHHHHHHTSCCC-S-HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHH
T ss_pred cCCCCCchHHHHHHHHHHHhCCC-C-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 55666777777776666554421 1 1222567888888889999999999999998876533 22222 2345556
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHH
Q 016814 236 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI 315 (382)
Q Consensus 236 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~ 315 (382)
+..++ +++.++|..|+.+++.+....+. .+.. .+..+.....|+ +.+|..+++.+..++..-+ ...+++.+.
T Consensus 288 L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~-~~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~ 359 (591)
T 2vgl_B 288 LVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQ-EIKVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELK 359 (591)
T ss_dssp HHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTT-CTTTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHH
T ss_pred HHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHH-HHHhheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHH
Confidence 55544 57889999999999999875322 1111 111111112233 6666666666666553222 234555556
Q ss_pred hhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 316 NASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 316 ~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
.++.+.+..+|..++.+++.++..+.+. ...+++.|..++.+....|+..+..++..+.
T Consensus 360 ~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 360 EYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 6666666666666666666666555321 2345555555555555555555555555443
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=3.4e-20 Score=172.93 Aligned_cols=375 Identities=13% Similarity=0.043 Sum_probs=263.9
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChh-hh--hhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC--cccccc
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQ-DC--VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP--EPTRMD 75 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~-~~--~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ 75 (382)
+..+++++++.+|..|+..+..++..-... .. ....++.+.+.+. ++++.+|..++..|..++..-.. ......
T Consensus 22 Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g 101 (529)
T 1jdh_A 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 101 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcC
Confidence 346788999999999999999998743321 11 1245666666664 55899999999999987642111 112235
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--H-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC------
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG------ 146 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~------ 146 (382)
.+|.+.++++++++.+|..++.+|.+++..-+. . ......+|.+.++++++++.++..++.++..++...+
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i 181 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 899999999999999999999999999876322 1 2245788999999999999999988888776653110
Q ss_pred ---------------------------------------hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814 147 ---------------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187 (382)
Q Consensus 147 ---------------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~ 187 (382)
........+|.+.+++.+.++.++..++..+..++...+..
T Consensus 182 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 261 (529)
T 1jdh_A 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 261 (529)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh
Confidence 00011245667777777888888888888888877654333
Q ss_pred hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHh
Q 016814 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEF 262 (382)
Q Consensus 188 ~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~ 262 (382)
.....++|.+.+++.++++.+|..++..+..++..-. ........+|.+..++.+. ++.+|..++.+++.++...
T Consensus 262 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~ 341 (529)
T 1jdh_A 262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341 (529)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC
Confidence 2335688999999999999999999999999865321 1122234677788888753 3799999999999997543
Q ss_pred Ch------HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHH
Q 016814 263 GP------EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVL 333 (382)
Q Consensus 263 ~~------~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l 333 (382)
+. .......+|.+.+++.+++ +.+|..++++++.++..-... .....++|.++..+.++++.+|..++.++
T Consensus 342 ~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l 421 (529)
T 1jdh_A 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421 (529)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred chHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhccc
Confidence 22 1123457899999999876 699999999999998532211 23356789999998887777777555444
Q ss_pred H----------------------HHhhhhhH--HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 334 Q----------------------SLIPIVDQ--SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 334 ~----------------------~i~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
+ .+...... .......+|.+..++.|++++||..|..++..++
T Consensus 422 ~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp ----CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 4 33332111 1233567799999999999999999999988865
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.87 E-value=8.8e-20 Score=173.70 Aligned_cols=376 Identities=14% Similarity=0.062 Sum_probs=277.0
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChh--h-hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccc
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQ--D-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMD 75 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ 75 (382)
|..+++++++.+|..|+.++..++...... . .....+|.+.+++.+++++++..++.+|..++...++ ......
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g 182 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcC
Confidence 345778889999999999999999864321 1 2356889999999999999999999999998842111 112235
Q ss_pred hHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHH
Q 016814 76 LVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 152 (382)
Q Consensus 76 ll~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 152 (382)
.++.+++++.+.+ ..++..++.+|.+++..-.. .......++.+.+++++.+..++..++.++..++..........
T Consensus 183 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 262 (644)
T 2z6h_A 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 262 (644)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCH
T ss_pred ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 6888999888765 66888899999888753222 13334678999999999999999999999999986554333345
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--h-hHhhhHHHHHHHHhcCC--CchHHHHHHHHhHHHHhhhchh-
Q 016814 153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG- 226 (382)
Q Consensus 153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~llp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~- 226 (382)
.++|.+.++++++++.+|..++.++..+...-.. . ......+|.+..++.+. .+.++..++..++.++...+..
T Consensus 263 ~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~ 342 (644)
T 2z6h_A 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 342 (644)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHH
Confidence 7899999999999999999999999988753211 1 11234678888887653 3799999999999997533321
Q ss_pred -----hhHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcc---------------
Q 016814 227 -----FFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPH--------------- 283 (382)
Q Consensus 227 -----~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~--------------- 283 (382)
......+|.+..++.+++ +.+|..++.+++.++..-.. ......++|.+.+.+.+.+
T Consensus 343 ~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~ 422 (644)
T 2z6h_A 343 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 422 (644)
T ss_dssp HHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccch
Confidence 222357888999999875 79999999999998752211 1234567888888776543
Q ss_pred -------hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHH
Q 016814 284 -------YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPC 352 (382)
Q Consensus 284 -------~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~ 352 (382)
..++..++.++..++..-... ......+|.+..++.++++++|..++.+|..+...-... ......++.
T Consensus 423 ~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~ 502 (644)
T 2z6h_A 423 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 502 (644)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHH
T ss_pred hcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhH
Confidence 345666777777776433211 123467899999999999999999999999987541111 223456788
Q ss_pred HHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 353 LVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 353 l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
|..++++++++||..|..++..++.
T Consensus 503 L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 503 LTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988764
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.87 E-value=5.1e-19 Score=167.62 Aligned_cols=376 Identities=12% Similarity=0.074 Sum_probs=283.1
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccCh-hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----cc----
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT---- 72 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~---- 72 (382)
+..|++.+++.++..|.+.++..+..-.. +.+.+.-.|.+..++++++..+|..++.+|.+++...+.+ .+
T Consensus 295 li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~ 374 (810)
T 3now_A 295 ILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGA 374 (810)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhcc
Confidence 44678888999999999999998775222 2222223488889998888999999999998887543311 11
Q ss_pred ccchHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH--HHH-HhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC-
Q 016814 73 RMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE--LAI-QHILPCVKELSSDSSQHVRSALASVIMGMAPLLG- 146 (382)
Q Consensus 73 ~~~ll~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~--~~~-~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~- 146 (382)
...+++.+.+++.++ ++++|+.|+++|..+...-... ... ..++|.+.+++++.++.++..++.+++.++...+
T Consensus 375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 134788899999887 7899999999999986533221 222 4689999999999899999999999999986431
Q ss_pred ----------------------------------hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc-hh-hHh
Q 016814 147 ----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID-LLS 190 (382)
Q Consensus 147 ----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~-~~-~~~ 190 (382)
........+|.+..+++.+++.+|..++++++.++..-. .+ ...
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~ 534 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQ 534 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 011124578999999999999999999999999974311 01 122
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh-----HHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHhCh
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGP 264 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~ 264 (382)
...+|.|..++.+.+...|..++..|..++....++.. ....+|.+..+|..+ +...+..|+.+|..++..-..
T Consensus 535 ~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~ 614 (810)
T 3now_A 535 EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614 (810)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence 45789999999999999999999999998865544321 123678888888754 344566788999988863111
Q ss_pred ---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh-hhhh--hhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 265 ---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 265 ---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~--~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
.......+|.+.+++.+++..+|..|+++++.++..-.. ..+. ...+|.++.++..++..+|..|+.+|+.+..
T Consensus 615 ~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 123346789999999999999999999999999853221 1222 3578999999999999999999999999987
Q ss_pred hhhH--H-HHH-HhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 339 IVDQ--S-MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 339 ~~~~--~-~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
.... + .+. ...+|.|..++.+++.++|..|+.++..+..
T Consensus 695 ~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 695 VSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 4221 2 233 5788999999999999999999999998875
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.87 E-value=3.6e-19 Score=169.46 Aligned_cols=376 Identities=13% Similarity=0.059 Sum_probs=268.0
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChhh-h--hhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCC--cccccc
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQD-C--VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP--EPTRMD 75 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~--~~~ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ 75 (382)
+..+++++++.+|..|+..++.++....... . ....++.+.+.+.+ .++.+|..++..|..++..-.. ......
T Consensus 19 Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g 98 (644)
T 2z6h_A 19 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG 98 (644)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcC
Confidence 4567889999999999999999998654321 1 12456666666654 5889999999999887643111 112235
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-----
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----- 147 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----- 147 (382)
.+|.+++++.++++.+|..|+.+|.+++...... ......+|.+.++++++++.++..++.+|..++...+.
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i 178 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 8999999999999999999999999998764221 22357889999999998888888888887776632110
Q ss_pred ---------------------------------------H-hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814 148 ---------------------------------------D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187 (382)
Q Consensus 148 ---------------------------------------~-~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~ 187 (382)
+ ......+|.+.+++.+.++.++..++..+..++......
T Consensus 179 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~ 258 (644)
T 2z6h_A 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 258 (644)
T ss_dssp HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC
T ss_pred HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh
Confidence 0 001234566666677777777777777777776543322
Q ss_pred hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHHHHhccch--hHHHHHHHHHHHHHHHHh
Q 016814 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKV--YSIRDAAANNLKRLAEEF 262 (382)
Q Consensus 188 ~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~ 262 (382)
.....++|.+.+++.++++.+|..++..+..++..-. ........++.+..++.+.+ +.+|..|+.+++.++...
T Consensus 259 ~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~ 338 (644)
T 2z6h_A 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 338 (644)
T ss_dssp CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCC
Confidence 2235688999999999999999999999999876321 11222346788888887643 799999999999997533
Q ss_pred ChH------HHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccCh--hhhhhhhHHHHHhhccCCC-----------
Q 016814 263 GPE------WAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRV----------- 322 (382)
Q Consensus 263 ~~~------~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~----------- 322 (382)
+.. ......+|.+.+++.+++ +.+|..++.+++.++..-.. ......++|.+...+.+.+
T Consensus 339 ~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al 418 (644)
T 2z6h_A 339 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418 (644)
T ss_dssp TTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-----
T ss_pred chHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhcc
Confidence 321 123457899999998875 79999999999999753221 1234567888888877643
Q ss_pred -----------ccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 323 -----------PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 323 -----------~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
..++..++.+|..+....... ......+|.|..++.+.+.++|..|..++..++.
T Consensus 419 ~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 345666777777776543322 1235678999999999999999999999888653
No 26
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.87 E-value=2e-19 Score=166.14 Aligned_cols=371 Identities=12% Similarity=0.114 Sum_probs=275.9
Q ss_pred hccCCchHHHHHHHHHHHHHHhccC--h--hhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC---cccccch
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDL 76 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~--~--~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l 76 (382)
.++.+++..+..|...+..+...-. + .-+...++|.+.++++ +.++.++..|+.+|++++..-.+ .......
T Consensus 65 ~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~Ga 144 (510)
T 3ul1_B 65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 144 (510)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 4567888999999999988765322 2 2234447899999886 55689999999999999842211 1122357
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCCch-----HHHHHHHHHHHhhccccCh-
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQ-----HVRSALASVIMGMAPLLGK- 147 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~~~-----~vr~~a~~~l~~l~~~~~~- 147 (382)
+|.+++++.+++..||+.|+.+|++++.... ........++.+..++.+++. .+...++.++..++..-..
T Consensus 145 Ip~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~ 224 (510)
T 3ul1_B 145 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 224 (510)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccch
Confidence 9999999999999999999999999975322 223345678888888876543 4566778888887753321
Q ss_pred --HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814 148 --DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 222 (382)
Q Consensus 148 --~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 222 (382)
-.....++|.+.+++.+++++++..++.++..++..-... .....++|.+.+++.++++.++..++..++.++..
T Consensus 225 ~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~ 304 (510)
T 3ul1_B 225 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304 (510)
T ss_dssp CCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC
Confidence 1234678999999999999999999999999887542211 11245789999999999999999999999998643
Q ss_pred hch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH
Q 016814 223 LGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISL 296 (382)
Q Consensus 223 ~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~ 296 (382)
-.. .......++.+..++.+++..+|..|+.+++.++..... ......++|.+...+.+++..+|..|++++..
T Consensus 305 ~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~N 384 (510)
T 3ul1_B 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 384 (510)
T ss_dssp CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 221 122234567788889999999999999999999753211 12345689999999999999999999999999
Q ss_pred hccccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh---H-HHH-----HHhHHHHHHHhcCCCCcc
Q 016814 297 LAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---Q-SMV-----EKTIRPCLVELTEDPDVD 363 (382)
Q Consensus 297 l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~---~-~~~-----~~~i~~~l~~l~~d~~~~ 363 (382)
++.....+. .....++.|..++.++++.++..++++|..+..... . +.+ ....+..+..+..+++.+
T Consensus 385 l~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~ 464 (510)
T 3ul1_B 385 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 464 (510)
T ss_dssp HHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHH
T ss_pred HHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence 986555432 235678999999999999999999999998876432 1 111 234567788888899999
Q ss_pred HHhHHHHHHHHH
Q 016814 364 VRFFATQAIQSI 375 (382)
Q Consensus 364 vr~~a~~al~~~ 375 (382)
|+..|.+.+..+
T Consensus 465 i~~~A~~iie~y 476 (510)
T 3ul1_B 465 VYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
No 27
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.86 E-value=1.4e-19 Score=171.36 Aligned_cols=376 Identities=14% Similarity=0.135 Sum_probs=282.8
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccC--h------hhhhhhhhhhhhhhccCC--CHHHHHHHHHHHHHHHHHhCC--
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLE--P------QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP-- 69 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~--~------~~~~~~ll~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~-- 69 (382)
|..|++++++.+|..|+.+|..++...+ + +.....+++.+.+++.++ ++.+|+.++.+|..++..-..
T Consensus 335 L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~ 414 (810)
T 3now_A 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE 414 (810)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 4567778889999999999999985332 1 112346788888888777 889999999999998743221
Q ss_pred ccc-ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC-----------------------------------HHHHHH
Q 016814 70 EPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-----------------------------------PELAIQ 113 (382)
Q Consensus 70 ~~~-~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-----------------------------------~~~~~~ 113 (382)
... ....+|.++++++++++.+...++.+|++++.... ...+..
T Consensus 415 ~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea 494 (810)
T 3now_A 415 KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE 494 (810)
T ss_dssp HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC
Confidence 111 13489999999999899999999999999987321 112334
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-H-hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH--
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-- 189 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~-- 189 (382)
..+|.|..+++++++.+|..++++++.++..-.. + ......+|.+..++.+.++..|..++.++..++....++..
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence 6899999999999999999999999999853211 1 12356789999999999999999999999998765443321
Q ss_pred ---hhhHHHHHHHHhcCCCc-hHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814 190 ---SQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 262 (382)
Q Consensus 190 ---~~~llp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 262 (382)
....+|.|..++..+.. ..+..++..|..++..-. ........+|.+..++.+++..||..|+.+++.++..-
T Consensus 575 ~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH
T ss_pred chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 13468899999875533 445678888888875321 12233456888999999999999999999999998521
Q ss_pred Ch-HHHH--hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh--h-hhh-hhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814 263 GP-EWAM--QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--E-ITC-SRLLPVVINASKDRVPNIKFNVAKVLQS 335 (382)
Q Consensus 263 ~~-~~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~-~~~-~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 335 (382)
.. ..+. ...++.+..++..++..+|..|+++++.++..... . ... ...+|.+..++.+++..+|..|+.++..
T Consensus 655 ~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N 734 (810)
T 3now_A 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILN 734 (810)
T ss_dssp HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 11 1122 35788999999999999999999999999864221 2 233 4689999999999999999999999999
Q ss_pred Hhhhhh---HHHHHHhHHHHHHHhcCCC---CccHHhHHHHHHHHHHH
Q 016814 336 LIPIVD---QSMVEKTIRPCLVELTEDP---DVDVRFFATQAIQSIDH 377 (382)
Q Consensus 336 i~~~~~---~~~~~~~i~~~l~~l~~d~---~~~vr~~a~~al~~~~~ 377 (382)
+...-+ ........++.|..++.++ +.+++..|.+++..+..
T Consensus 735 L~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 735 MINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 986322 1233467889999987655 68899999999998865
No 28
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.86 E-value=4.6e-19 Score=164.64 Aligned_cols=371 Identities=12% Similarity=0.108 Sum_probs=276.5
Q ss_pred hccCCchHHHHHHHHHHHHHHhccCh----hhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC---cccccch
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDL 76 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l 76 (382)
.+..+++..+..|+..+..+...-.. .-+...++|.+.+++. +.++.++..++.+|.+++..-.. .......
T Consensus 84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Ga 163 (529)
T 3tpo_A 84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 163 (529)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 35567788899999998887643221 2234558888888885 66789999999999999853221 1222457
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhh---CHHHHHHhhhHhhhhhcCCCch-----HHHHHHHHHHHhhccccCh-
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRIL---NPELAIQHILPCVKELSSDSSQ-----HVRSALASVIMGMAPLLGK- 147 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~---~~~~~~~~il~~l~~~~~d~~~-----~vr~~a~~~l~~l~~~~~~- 147 (382)
+|.++.++.+++..||..|+.+|++++..- .........++.+..++.+++. .+...++.++..++..-.+
T Consensus 164 ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~ 243 (529)
T 3tpo_A 164 IPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 243 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch
Confidence 999999999999999999999999997532 1223345678888888876543 4566778888887654321
Q ss_pred --HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814 148 --DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 222 (382)
Q Consensus 148 --~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 222 (382)
-.....++|.+..++.++++.++..++.++..+...-... .....++|.+..++.++++.++..++..++.++..
T Consensus 244 ~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~ 323 (529)
T 3tpo_A 244 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 323 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc
Confidence 2234678999999999999999999999999887542211 11245789999999999999999999999998753
Q ss_pred hch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH
Q 016814 223 LGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISL 296 (382)
Q Consensus 223 ~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~ 296 (382)
-.. .......++.+..++.+++..+|..|+.+++.++..-.. ......++|.+...+.+++..+|..|+++++.
T Consensus 324 ~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n 403 (529)
T 3tpo_A 324 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN 403 (529)
T ss_dssp CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 221 122334678888999999999999999999999853211 12345689999999999999999999999999
Q ss_pred hccccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh----HHHH-----HHhHHHHHHHhcCCCCcc
Q 016814 297 LAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----QSMV-----EKTIRPCLVELTEDPDVD 363 (382)
Q Consensus 297 l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~----~~~~-----~~~i~~~l~~l~~d~~~~ 363 (382)
++.....+. ....++|.|+.+|.++++.++..++.+|..+..... .+.+ ....+..+..+..+++.+
T Consensus 404 l~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~ 483 (529)
T 3tpo_A 404 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 483 (529)
T ss_dssp HHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHH
T ss_pred HHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHH
Confidence 986554432 234578999999999999999999999999875432 1112 124567788888889999
Q ss_pred HHhHHHHHHHHH
Q 016814 364 VRFFATQAIQSI 375 (382)
Q Consensus 364 vr~~a~~al~~~ 375 (382)
|+..|.+.+...
T Consensus 484 i~~~A~~iie~y 495 (529)
T 3tpo_A 484 VYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.86 E-value=2.1e-19 Score=173.83 Aligned_cols=376 Identities=14% Similarity=0.061 Sum_probs=272.6
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccCh--hhh-hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhC---Ccccccc
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEP--QDC-VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMD 75 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~-~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~ 75 (382)
|..+++++++.+|..|+.+|..++..... ..+ ....+|.+.+++.++++.+|..++.++..++.... .......
T Consensus 239 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~ 318 (780)
T 2z6g_A 239 LVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 318 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Confidence 34577888999999999999999986433 112 34578889999999999999999999988773110 0112235
Q ss_pred hHHHHHHhcCCCcH-HHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHH
Q 016814 76 LVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 152 (382)
Q Consensus 76 ll~~l~~~l~d~~~-~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 152 (382)
.++.+++++.+.+. .++..++.++..++..-.. .......+|.+..++.+.+..++..++.++..++..........
T Consensus 319 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 398 (780)
T 2z6g_A 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 398 (780)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhh
Confidence 68888888887764 4566778888888753222 23344678999999999999999999999999986554333346
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--h-hHhhhHHHHHHHHhcC-CCc-hHHHHHHHHhHHHHhhhch--
Q 016814 153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV-- 225 (382)
Q Consensus 153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~llp~l~~~~~d-~~~-~vr~~~~~~l~~l~~~~~~-- 225 (382)
.++|.+.++++++++.+|..++.+|+.+...-.. . ......+|.+.+++.+ .++ .+|..++..++.++...+.
T Consensus 399 ~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~ 478 (780)
T 2z6g_A 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE 478 (780)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHH
Confidence 7899999999999999999999999998654211 1 1113467888887765 344 8999999999998653322
Q ss_pred ----hhhHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcc---------------
Q 016814 226 ----GFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPH--------------- 283 (382)
Q Consensus 226 ----~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~--------------- 283 (382)
.......+|.+..++.+++ +.+|..++.+++.++..-.. ......++|.+.+.+.+.+
T Consensus 479 ~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~ 558 (780)
T 2z6g_A 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 558 (780)
T ss_dssp HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccch
Confidence 1222345788899998776 59999999999999842111 1123457788877776543
Q ss_pred -------hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHH
Q 016814 284 -------YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPC 352 (382)
Q Consensus 284 -------~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~ 352 (382)
..++..++.++..++..-... ......+|.|..++.++++.+|..++.+|..+...-... ......++.
T Consensus 559 ~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~ 638 (780)
T 2z6g_A 559 FVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 638 (780)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHH
T ss_pred hhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHH
Confidence 345667777887776321111 123567899999999999999999999999987432111 223457888
Q ss_pred HHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 353 LVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 353 l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
|.+++++++.+||..|..++..+..
T Consensus 639 L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 639 LTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998875
No 30
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.86 E-value=7.1e-20 Score=156.26 Aligned_cols=254 Identities=19% Similarity=0.139 Sum_probs=200.5
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 154 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 154 (382)
.-++.+++.+.|+++.||..|+.+|+.+.. ...++.+.++++|+++.||..++.+++.+...- .....+
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l 91 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNV 91 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHH
Confidence 357888889999999999999999998752 246788889999999999999999999886421 123456
Q ss_pred HHHHHH-hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814 155 LPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 233 (382)
Q Consensus 155 ~~~l~~-~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 233 (382)
++.+.+ +++|+++.||..++.+++.+....+ .....++|.+...++|+++.||..++..++.+.. +..+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence 677763 5788999999999999999874322 1225678899999999999999999999987653 2367
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHH
Q 016814 234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 313 (382)
Q Consensus 234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~ 313 (382)
|.+...+.|+++.||..|+.+++.+.. .. ...++.+...+.|+++.+|..++.+++.+. ....+|.
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~ 227 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY--DN----SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSV 227 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC--CC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc--Cc----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHH
Confidence 788888999999999999999988631 11 347788889999999999999999999876 2457788
Q ss_pred HHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCC-CCccHHhHHHHHHH
Q 016814 314 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED-PDVDVRFFATQAIQ 373 (382)
Q Consensus 314 l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~ 373 (382)
+...++|+ .||..++.+|+.+.. ...+|.|.+++.+ ++++++..+..++.
T Consensus 228 L~~~l~d~--~vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 228 LCDELKKN--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHTSS--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHhcCc--cHHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 88888884 499999999998864 3578888887754 67788887777764
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.86 E-value=1.1e-19 Score=175.85 Aligned_cols=374 Identities=13% Similarity=0.048 Sum_probs=263.8
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhh-h--hhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC--cccccch
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQD-C--VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP--EPTRMDL 76 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~--~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l 76 (382)
..++.++++.+|..|+.++..++....... . .+.+++.+.+.+. +.++.+|..++..|..++..-.. .......
T Consensus 156 v~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~ 235 (780)
T 2z6g_A 156 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGG 235 (780)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCC
Confidence 456778899999999999999987542211 1 1246666666665 55899999999999987643111 1122358
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC-------
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG------- 146 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~------- 146 (382)
+|.+++++.++++.+|..|+.+|.+++...... ......+|.+.+++++.++.++..++.++..++....
T Consensus 236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~ 315 (780)
T 2z6g_A 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 999999999999999999999999998763221 2235788999999999888898888777775542110
Q ss_pred --------------------------------------hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhh
Q 016814 147 --------------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 188 (382)
Q Consensus 147 --------------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~ 188 (382)
........+|.+..++.+.++.++..++..+..++.......
T Consensus 316 ~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 395 (780)
T 2z6g_A 316 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 395 (780)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh
Confidence 000012345666677777777788888887777765543322
Q ss_pred HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccc-h-hHHHHHHHHHHHHHHHHhC
Q 016814 189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDK-V-YSIRDAAANNLKRLAEEFG 263 (382)
Q Consensus 189 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~-~~vr~~a~~~l~~~~~~~~ 263 (382)
....++|.+.+++.++++.+|..++..|..++..-.. .......++.+..++.+. + ..+|..|+.+++.++...+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 2356899999999999999999999999998653211 111234677788888763 3 3899999999999875332
Q ss_pred h------HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCC------------
Q 016814 264 P------EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRV------------ 322 (382)
Q Consensus 264 ~------~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~------------ 322 (382)
. .......+|.+.+.+.+++ +.+|..++++++.++..-... .....++|.++..+.+.+
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~ 555 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 555 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccc
Confidence 2 1123457899999998877 699999999999998532111 123457788887776533
Q ss_pred ----------ccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 323 ----------PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 323 ----------~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
..++..++.+|..+....... ......+|.|..++.+++.+||..|+.++..++
T Consensus 556 nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 556 QQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp --CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 346677788888776432222 124677899999999999999999999998865
No 32
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.84 E-value=1.9e-19 Score=153.60 Aligned_cols=253 Identities=15% Similarity=0.064 Sum_probs=199.6
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 016814 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 116 (382)
Q Consensus 37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il 116 (382)
-++.+.+.+.|+++.+|..++..|+.+. ....++.+.+++.|+++.||..++.+|+.+...- + ....++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~-~~~~l~ 92 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--K-CEDNVF 92 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--T-THHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--c-cchHHH
Confidence 4566777889999999999999999875 2457899999999999999999999998875311 1 122455
Q ss_pred Hhhh-hhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHH
Q 016814 117 PCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 195 (382)
Q Consensus 117 ~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp 195 (382)
+.+. .+++|+++.||..++.+++.+....+ ...+.++|.+...++|+++.||..++.+++.+.. ...+|
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~ 162 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP 162 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence 6666 35789999999999999999864322 1235678999999999999999999999988753 34678
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHH
Q 016814 196 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 275 (382)
Q Consensus 196 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 275 (382)
.+..+++|+++.||..++..++.+.. ..+..++.+...+.|+++.||..|+.+++.+. . ...+|.+
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~----~~~~~~L 228 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D----KRVLSVL 228 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C----GGGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----C----HhhHHHH
Confidence 88889999999999999999987631 12457788889999999999999999998865 2 3578888
Q ss_pred HhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccC-CCccHHHHHHHHHH
Q 016814 276 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQ 334 (382)
Q Consensus 276 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~ 334 (382)
...+.|++ +|..++.+++.+.. ...+|.+...+.+ +++.++..+++.+.
T Consensus 229 ~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 229 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 88888865 88999999998764 3678888888865 45678877777765
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.84 E-value=1.8e-18 Score=159.83 Aligned_cols=341 Identities=13% Similarity=0.073 Sum_probs=255.5
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHH---
Q 016814 38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPE--- 109 (382)
Q Consensus 38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~--- 109 (382)
++-+.+.+.+.|...+..++..+.++...-... .....++|.+++++.+ +++.++..|+.+|.+++..-...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 455566778899999999999998876432221 2234589999999975 45899999999999997532211
Q ss_pred HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhhcCCC-----hHHHHHHHHhhHHhh
Q 016814 110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKDEF-----PDVRLNIISKLDQVN 181 (382)
Q Consensus 110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~-----~~vr~~~~~~l~~~~ 181 (382)
.+....+|.+..+++++++.||..++.+|+.++..... + ......++.+..++.+.+ ..+...++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 33446899999999999999999999999999853221 1 123567788888887654 245666777777766
Q ss_pred hhhch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---hhHHHHHHHHHHHhccchhHHHHHHHHHH
Q 016814 182 QVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNL 255 (382)
Q Consensus 182 ~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 255 (382)
..-.. -.....++|.+..++.+++..++..++..+..++..-... .....++|.+..++.+++..++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 53211 1223678999999999999999999999999987532211 12234688899999999999999999999
Q ss_pred HHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHH
Q 016814 256 KRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNV 329 (382)
Q Consensus 256 ~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a 329 (382)
+.++..-.. .......++.+..++.+++..+|..++++++.++...... .....++|.++..+.+.+..+|..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 998753211 1123457778888899999999999999999997543221 2345689999999999999999999
Q ss_pred HHHHHHHhhhhhHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 330 AKVLQSLIPIVDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 330 ~~~l~~i~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
+.+|..+...-..+. ....+++.|..++.++|++++..+..++..+...
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999987544332 3467889999999999999999999999988654
No 34
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.83 E-value=3.6e-18 Score=158.66 Aligned_cols=342 Identities=13% Similarity=0.071 Sum_probs=257.9
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHH--
Q 016814 37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPE-- 109 (382)
Q Consensus 37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~-- 109 (382)
.++-+.+.+..+++..+..++..+.++...-... .....++|.+++++.. +++.++..|+.+|.+++..-...
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4566667778889999999999988775322221 2234689999999964 56899999999999997643221
Q ss_pred -HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhhcCCC-----hHHHHHHHHhhHHh
Q 016814 110 -LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKDEF-----PDVRLNIISKLDQV 180 (382)
Q Consensus 110 -~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~-----~~vr~~~~~~l~~~ 180 (382)
.+....+|.+..++.++++.+|..++.+|+.++..-.. + ......++.+..++.+.+ ..+...++.++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 34456899999999999999999999999999853221 1 123457788888887654 24566677777776
Q ss_pred hhhhch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHH
Q 016814 181 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN 254 (382)
Q Consensus 181 ~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 254 (382)
+..-.+ -.....++|.+..++.+++..++..++.++..++..-.. ......++|.+..++.+++..++..++.+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a 316 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence 643221 122367899999999999999999999999998753321 11223578889999999999999999999
Q ss_pred HHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHH
Q 016814 255 LKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFN 328 (382)
Q Consensus 255 l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~ 328 (382)
++.++..-.. .......++.+..++.+++..+|..|+++++.++..-... .....++|.++..+.+.+..+|..
T Consensus 317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 396 (529)
T 3tpo_A 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKA 396 (529)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHH
Confidence 9998742211 1133467888999999999999999999999997542221 234568999999999999999999
Q ss_pred HHHHHHHHhhhhhHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 329 VAKVLQSLIPIVDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 329 a~~~l~~i~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
|+.+|..+...-..+. ....+++.|..++..+|++++..+..++..+...
T Consensus 397 A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 397 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999986544332 3456889999999999999999999999988654
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.83 E-value=2.9e-18 Score=161.70 Aligned_cols=360 Identities=12% Similarity=0.089 Sum_probs=243.0
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 82 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 82 (382)
.+-++|+++.+|..|+++++.+.. ....+.+.|.+.+++.|+++.||+.|+.+++.+....++ . ...+++.+.+
T Consensus 113 ~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~-v~~~~~~l~~ 186 (618)
T 1w63_A 113 KNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-L-MEMFLPATKN 186 (618)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-G-GGGGGGGTTT
T ss_pred HHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-H-HHHHHHHHHH
Confidence 445679999999999999999873 345677899999999999999999999999999985433 2 2467888899
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCH-HHHHHhhhHhhhhhcC---------------CCchHHHHHHHHHHHhhccccC
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNP-ELAIQHILPCVKELSS---------------DSSQHVRSALASVIMGMAPLLG 146 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~~~---------------d~~~~vr~~a~~~l~~l~~~~~ 146 (382)
++.|+++.|+.+|+.++..++..-+. ......++|.+.+.+. ..+++.+..++++++.++..-+
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~ 266 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD 266 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred HhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence 99999999999999999998753221 0122345555554333 2466777777777766654211
Q ss_pred h----------------------------------------HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch
Q 016814 147 K----------------------------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 186 (382)
Q Consensus 147 ~----------------------------------------~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~ 186 (382)
. ........+.+..++.++++++|..++.+++.+.... +
T Consensus 267 ~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~-p 345 (618)
T 1w63_A 267 DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD-H 345 (618)
T ss_dssp HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC-H
Confidence 0 0001123455566677777888888888888777542 2
Q ss_pred hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--
Q 016814 187 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-- 264 (382)
Q Consensus 187 ~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-- 264 (382)
+.+ ....+.+..++.|++..+|..+++.+..++..-.- +.+++-+...+.+.+.++|..++.+++.++..+.+
T Consensus 346 ~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~ 420 (618)
T 1w63_A 346 NAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK 420 (618)
T ss_dssp HHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH
Confidence 223 45566777778888888888888887777553221 34566666677778888999999999998886532
Q ss_pred HHHH---------------------------------hhhHHHHHhhhcC--cchHHHHHHHHHHHHhccccChh-----
Q 016814 265 EWAM---------------------------------QHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE----- 304 (382)
Q Consensus 265 ~~~~---------------------------------~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~----- 304 (382)
+++. ...++.+.+.+.+ .+......+++++|.++..+...
T Consensus 421 ~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~ 500 (618)
T 1w63_A 421 RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEE 500 (618)
T ss_dssp HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSS
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccc
Confidence 1111 1233344444442 22334446788888887543210
Q ss_pred ----hhhhhhHHHHHhhcc--CCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814 305 ----ITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376 (382)
Q Consensus 305 ----~~~~~~l~~l~~~l~--d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 376 (382)
..-..+++.+..+++ +.++.+|..++.++.+++...+. ....+...|.....|.+.+||..|...+..+.
T Consensus 501 ~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 501 EPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 011233444444443 56788999999999999877643 24556666677788999999999999887654
No 36
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.80 E-value=6.2e-18 Score=140.78 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=144.7
Q ss_pred cChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHH
Q 016814 28 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCR 104 (382)
Q Consensus 28 ~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~ 104 (382)
+++.++...+.+-+.+.++|++|..|+.++..|..+++..+. ......+++.+...+. |++..||..|+.+++.++.
T Consensus 7 ~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 7 LDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK 86 (242)
T ss_dssp TSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 445555666777788888999999999999999999987433 1223468888888884 9999999999999999998
Q ss_pred hhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 016814 105 ILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182 (382)
Q Consensus 105 ~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~ 182 (382)
.+++. .+...++|.+.+.+.|+++.||..+..++..++...+ .+.++|.+...+++.++.+|..++..++.+..
T Consensus 87 ~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 87 GLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp HHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 77654 4556788888888888888888888888888876544 34566777777777777777777777777655
Q ss_pred hhchh----hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh
Q 016814 183 VIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 227 (382)
Q Consensus 183 ~~~~~----~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 227 (382)
..+++ .....++|.+..+++|+++.||..+..+++.++..+|.+.
T Consensus 163 ~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~ 211 (242)
T 2qk2_A 163 RTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA 211 (242)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence 44322 1225666777777777777777777777777776666543
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.79 E-value=1.1e-16 Score=150.94 Aligned_cols=317 Identities=15% Similarity=0.085 Sum_probs=215.7
Q ss_pred hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL 84 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l 84 (382)
+..+++...|+.+--.+..+++.- .+..-.+.+.+.+-++|+++.+|..|+++++.+. .......++|.+.+++
T Consensus 78 ~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~~~l~~~l~~~L 151 (618)
T 1w63_A 78 LIASQKFTDKRIGYLGAMLLLDER--QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMCRDLAGEVEKLL 151 (618)
T ss_dssp HHHSSSHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHH
Confidence 455666777776666555555422 2223346677778889999999999999999876 2233456789999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH-hHHHhhHHHHHHhhc
Q 016814 85 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLLK 163 (382)
Q Consensus 85 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~ 163 (382)
.|+++.||++|+.+++.+....+ + ..+.+++.+.+++.|.++.|+..++.++..++..-+.. .....++|.+.+.+.
T Consensus 152 ~~~~~~VRk~A~~al~~l~~~~p-~-~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~ 229 (618)
T 1w63_A 152 KTSNSYLRKKAALCAVHVIRKVP-E-LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILK 229 (618)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHCG-G-GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHCh-H-HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987543 3 23478889999999999999999999999998653210 122345555554443
Q ss_pred C---------------CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc------CCCchHHHHHHHHhHHHHhh
Q 016814 164 D---------------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQ 222 (382)
Q Consensus 164 d---------------~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~~~ 222 (382)
+ .++-.+..+++.++.+...- + ...+.+.+.+..++. +.+..|...+++.+..+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-~-~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~- 306 (618)
T 1w63_A 230 NLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-D-DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS- 306 (618)
T ss_dssp HHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-H-HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-
T ss_pred HHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-
Confidence 2 46777777888887776431 1 112344555555442 2233566666666554321
Q ss_pred hchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC
Q 016814 223 LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302 (382)
Q Consensus 223 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~ 302 (382)
.........+.+..++.+++.++|..|+.+++.++...+ + ......+.++..+.|++..+|..++..+..++..-.
T Consensus 307 --~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~-~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n 382 (618)
T 1w63_A 307 --ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-N-AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN 382 (618)
T ss_dssp --CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-H-HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS
T ss_pred --CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-H-HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc
Confidence 112223456667777888888888888888888887532 2 233456677777888888888888888888775433
Q ss_pred hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814 303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 303 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 340 (382)
. ..+++.+..++.+.+.++|..++.+++.++..+
T Consensus 383 v----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 383 I----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp T----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 2 345666666776777888888888888887765
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=4.8e-18 Score=141.43 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=95.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChH--HH
Q 016814 194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE--WA 267 (382)
Q Consensus 194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~--~~ 267 (382)
-|.+.+.+.|++|+.|..++..+..++...+. ..+ ..+++.+...+. |++..||..|+.+++.++..+|.. .+
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444455555555555555555555543211 111 345555555552 555555555556655555555442 23
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH----
Q 016814 268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---- 343 (382)
Q Consensus 268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---- 343 (382)
...++|.+++.++|++..+|.++..++..+....+. ..++|.+...++++++.+|..++.+++.+....+++
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 444555555555555555555555555555544331 345555555555555555655555555554443221
Q ss_pred HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 344 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 344 ~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
.....++|.+.++++|++++||..|..+++.++..+|
T Consensus 172 ~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 2234555555555555555566666555555555554
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.77 E-value=4.7e-17 Score=132.57 Aligned_cols=188 Identities=19% Similarity=0.194 Sum_probs=134.9
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 016814 35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 114 (382)
Q Consensus 35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ 114 (382)
+..++.+.+.+.|+++.+|..++..|+.+.. ...+|.+.+++.|+++.||..++.+|+.+.. ..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 4456666677778888888888888876542 3467778888888888888888888877643 24
Q ss_pred hhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHH
Q 016814 115 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 194 (382)
Q Consensus 115 il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ll 194 (382)
.++.+.++++|+++.||..++.+++.+.. +..+|.+.++++|+++.||..++.+++.+.. ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence 56777777888888888888888887753 2456777777888888888888888877642 3456
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814 195 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 262 (382)
Q Consensus 195 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 262 (382)
|.+..+++|+++.||..++..++.+.. +...+.+..+++|+++.||..|..+|+.+....
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 777777788888888888888777632 456667777777788888888888877776544
No 40
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.76 E-value=8.1e-17 Score=130.13 Aligned_cols=187 Identities=19% Similarity=0.202 Sum_probs=143.7
Q ss_pred hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 016814 33 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI 112 (382)
Q Consensus 33 ~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~ 112 (382)
..+...+.+.+.++|+++.+|..++..|+.+.. ...++.+.+.+.|+++.||..++.+|+.+..
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 345566777888888888999888888886542 2457888888888888888888888887643
Q ss_pred HhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhh
Q 016814 113 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 192 (382)
Q Consensus 113 ~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ 192 (382)
...++.+.++++|+++.||..++.+++.+.. +..++.+.++++|+++.||..++.+++.+.. ..
T Consensus 75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~ 138 (201)
T 3ltj_A 75 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ER 138 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HH
Confidence 2456778888888888888888888888753 3466777788888888888888888887743 45
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814 193 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 259 (382)
Q Consensus 193 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 259 (382)
.+|.+..+++|+++.||..++..++.+.. +...+.+..++.|+++.||..|..+++.+.
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 66777888888888888888888887631 356677777788888888888888887654
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.76 E-value=3e-15 Score=140.74 Aligned_cols=363 Identities=13% Similarity=0.135 Sum_probs=238.5
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc--cCCCHHHHHHHHHHHHHHHHHhCCcccc-cchHHH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTR-MDLVPA 79 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~ 79 (382)
++=++|+++.+|-.|+++++.+.. .+..+.+.|.+.+++ .|.++.||+.|+-++..+....+ +... ..+++.
T Consensus 117 ~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~ 191 (621)
T 2vgl_A 117 KNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSR 191 (621)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHH
T ss_pred HHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHH
Confidence 344679999999999999998854 346678999999999 99999999999999999998543 3322 368999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCC--C-----------chHHHHHHHHHHHhhccc
Q 016814 80 YVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSD--S-----------SQHVRSALASVIMGMAPL 144 (382)
Q Consensus 80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d--~-----------~~~vr~~a~~~l~~l~~~ 144 (382)
+.+++.|+++.|+.+|+..+..++..-+.. ...+.++..+..++.+ . +++.+...++.+..++..
T Consensus 192 l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~ 271 (621)
T 2vgl_A 192 VVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP 271 (621)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC
Confidence 999999999999999999999887643221 1122222333332211 1 344444444444444321
Q ss_pred cC-------------------------------------------------hHhHHHhhHHHHHHhhcCCChHHHHHHHH
Q 016814 145 LG-------------------------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIIS 175 (382)
Q Consensus 145 ~~-------------------------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~ 175 (382)
-+ .........+.+..++.+.++++|-.++.
T Consensus 272 ~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~ 351 (621)
T 2vgl_A 272 EDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALE 351 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 11 01112334455556666677788888888
Q ss_pred hhHHhhhhhchhhHhhhHHHHHHHHhc-CCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHH
Q 016814 176 KLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN 254 (382)
Q Consensus 176 ~l~~~~~~~~~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 254 (382)
++..+....+.........+.+..++. |++..+|..+++.+..++.. +. .+.++.-+...+.+.+.+.|..++..
T Consensus 352 ~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~N-v~~Iv~eL~~yl~~~d~~~~~~~v~~ 427 (621)
T 2vgl_A 352 SMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SN-AQQIVAEMLSYLETADYSIREEIVLK 427 (621)
T ss_dssp HHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HH-HHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hh-HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 887776554322223556677777777 88888998888887776532 21 24566667777777888999999999
Q ss_pred HHHHHHHhCh--HHHHhh---------------------------------hHHHHHhhhcCcc--hHHHHHHHHHHHHh
Q 016814 255 LKRLAEEFGP--EWAMQH---------------------------------ITPQVLEMINNPH--YLYRMTILRAISLL 297 (382)
Q Consensus 255 l~~~~~~~~~--~~~~~~---------------------------------l~~~l~~~l~~~~--~~~r~~a~~~l~~l 297 (382)
++.++..+.+ +++.+. .+..+.+.+.++. ..+-..+++.+|..
T Consensus 428 I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy 507 (621)
T 2vgl_A 428 VAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEF 507 (621)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcch
Confidence 9998877643 222211 2222334444443 23444556788777
Q ss_pred ccccChhhh--hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcC--CCCccHHhHHHHHHH
Q 016814 298 APVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDVDVRFFATQAIQ 373 (382)
Q Consensus 298 ~~~~~~~~~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~--d~~~~vr~~a~~al~ 373 (382)
+..+..... -..++..+...+.+.++.||..++.++.+++...+. ....+...+..... |.+.+||..|..-..
T Consensus 508 ~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 508 GNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLR 585 (621)
T ss_dssp THHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHH
T ss_pred HHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 654432111 124455666667788899999999999999876542 33455555555666 999999999988776
Q ss_pred HHH
Q 016814 374 SID 376 (382)
Q Consensus 374 ~~~ 376 (382)
-+.
T Consensus 586 Ll~ 588 (621)
T 2vgl_A 586 LST 588 (621)
T ss_dssp HHH
T ss_pred HHc
Confidence 553
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.75 E-value=1.2e-16 Score=130.28 Aligned_cols=182 Identities=20% Similarity=0.190 Sum_probs=152.4
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 82 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 82 (382)
..+++|+++.+|..|+..++.+.. +...|.+.+.+.|+++.+|..++..|+.+.. ...++.+.+
T Consensus 25 ~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~ 88 (211)
T 3ltm_A 25 IKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLIK 88 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHHH
Confidence 456789999999999999988754 3567777888899999999999999998752 356899999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 162 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 162 (382)
+++|+++.||..++.+|+.+.. ...++.+.++++|+++.||..++.+++.+.. +..++.+.+++
T Consensus 89 ~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l 152 (211)
T 3ltm_A 89 ALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKAL 152 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Confidence 9999999999999999998754 3467889999999999999999999999853 35678889999
Q ss_pred cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814 163 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 224 (382)
Q Consensus 163 ~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 224 (382)
+|+++.||..++.+++.+.. +..++.+..+++|+++.||..+...|..+....+
T Consensus 153 ~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred cCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999998853 5678888888999999999999999988765443
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.75 E-value=1.7e-16 Score=128.17 Aligned_cols=178 Identities=20% Similarity=0.203 Sum_probs=152.1
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 82 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 82 (382)
-.+++|+++.+|..|+..++.+.. +...+.+.+.+.|+++.+|..++..|+.+.. ...++.+.+
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~ 83 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLIK 83 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHHH
Confidence 357889999999999999988754 2456677788899999999999999998642 356899999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 162 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 162 (382)
.+.|+++.||..++.+|+.+.. ...++.+.++++|+++.||..++.+++.+.. +..++.+..++
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l 147 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKAL 147 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHH
Confidence 9999999999999999998754 2467888899999999999999999999863 35778899999
Q ss_pred cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814 163 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 220 (382)
Q Consensus 163 ~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 220 (382)
+|+++.||..++.+++.+.. +..++.+..+++|+++.||..+.+.+..+.
T Consensus 148 ~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 148 KDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998842 567888888889999999999999998764
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.72 E-value=1.2e-14 Score=136.73 Aligned_cols=353 Identities=11% Similarity=0.030 Sum_probs=245.3
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 89 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~ 89 (382)
++..|+.++.-+..+-- .|.+ .+...+-+.+++.+++...|+.+.-.+..+++.- ....--+++.+.+-++|+++
T Consensus 51 ~~~~k~~~l~Kli~l~~-~G~d--~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~e~~~L~iN~l~kDl~~~n~ 125 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFL-LGHD--IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--SELIRLINNAIKNDLASRNP 125 (621)
T ss_dssp CHHHHHHHHHHHHHHHH-HSCC--CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--HHHHHHHHHHHHHHHHSCCH
T ss_pred CHHHHHHHHHHHHHHHH-cCCC--CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHhcCCCCH
Confidence 45555555554444322 2322 2345555667889999999999999888776321 11112357778888899999
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhc--CCCchHHHHHHHHHHHhhccccChHhHH-HhhHHHHHHhhcCCC
Q 016814 90 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKDATI-EQLLPIFLSLLKDEF 166 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~ 166 (382)
.+|..|+.+++.+.. ..+.+.++|.+.+++ .|.++.||..|+.++..+....+ +... +.+++.+.++++|.+
T Consensus 126 ~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d 200 (621)
T 2vgl_A 126 TFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQH 200 (621)
T ss_dssp HHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSC
T ss_pred HHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCC
Confidence 999999999998743 335678999999999 99999999999999999987433 3322 378999999999999
Q ss_pred hHHHHHHHHhhHHhhhhhchhhH---hhhHHHHHHHHhcCC-------------CchHHHHHHHHhHHHHhhhchhhhHH
Q 016814 167 PDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDR-------------HWRVRLAIIEYIPLLASQLGVGFFDD 230 (382)
Q Consensus 167 ~~vr~~~~~~l~~~~~~~~~~~~---~~~llp~l~~~~~d~-------------~~~vr~~~~~~l~~l~~~~~~~~~~~ 230 (382)
+.|+.+++..+..++..-+ +.+ .+.++..+.+++.+. ++-.+..+++.+..+...-.++ ..+
T Consensus 201 ~~V~~~a~~~l~~i~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~-~~~ 278 (621)
T 2vgl_A 201 LGVVTAATSLITTLAQKNP-EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPA-VRG 278 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCH-HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHH-HHH
T ss_pred ccHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHH-HHH
Confidence 9999999999999876432 222 233444444444321 3456777777777665321122 223
Q ss_pred HHHHHHHHHh---cc---------ch--hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH
Q 016814 231 KLGALCMQWL---QD---------KV--YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296 (382)
Q Consensus 231 ~l~~~l~~~l---~d---------~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~ 296 (382)
.+.+.+...+ .+ .+ ..|...+++++-.+. ....+.....+.+..++.+++..+|..++.++..
T Consensus 279 ~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~ 355 (621)
T 2vgl_A 279 RLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCT 355 (621)
T ss_dssp HHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 3333333332 11 12 266666666665543 2334556677888888888889999999999999
Q ss_pred hccccChhhhhhhhHHHHHhhcc-CCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814 297 LAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 297 l~~~~~~~~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 375 (382)
++...+...+.....+.++.++. |++..+|..+++.+..++.. .....++..|.+.+.+.+.+.|..+..+++.+
T Consensus 356 l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 356 LASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp HTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 98765422355667788888888 99999999999999888643 23466777777777788999999999999998
Q ss_pred HHHhcc
Q 016814 376 DHVMMS 381 (382)
Q Consensus 376 ~~~~~~ 381 (382)
+..+.+
T Consensus 432 a~k~~~ 437 (621)
T 2vgl_A 432 AEKYAV 437 (621)
T ss_dssp HHHHCS
T ss_pred HHhcCC
Confidence 876543
No 45
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.71 E-value=8.4e-14 Score=138.45 Aligned_cols=367 Identities=11% Similarity=0.074 Sum_probs=234.6
Q ss_pred CchHHHHHHHHHHHHHHhcc-C--------hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHH
Q 016814 9 DQDSVRLLAVEGCAALGKLL-E--------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 79 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~-~--------~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~ 79 (382)
.+..+|..|+..+....... . ++.....+...+.+.+.+.+..+|..++.+++.++..-.++ .+++++|.
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~ 127 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSD 127 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-chhHHHHH
Confidence 46789999999999877642 1 22233445545555554455899999999999999875553 47889999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhCH-----H------HHHHhhhHhhhh-------hcCCCch---------HHHH
Q 016814 80 YVRLLRDNEAEVRIAAAGKVTKFCRILNP-----E------LAIQHILPCVKE-------LSSDSSQ---------HVRS 132 (382)
Q Consensus 80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-----~------~~~~~il~~l~~-------~~~d~~~---------~vr~ 132 (382)
+.+.++++++..+..++.++..+++.... + .....+.|.+.. .+++... .++.
T Consensus 128 L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (960)
T 1wa5_C 128 LASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLL 207 (960)
T ss_dssp HHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999988888999999999999886531 1 112223332222 2444322 2233
Q ss_pred HHHHHHHhhcc-ccChH--hHHHhhHHHHHHhhcC-----------CC----hHHHHHHHHhhHHhhhhhchhh--Hhhh
Q 016814 133 ALASVIMGMAP-LLGKD--ATIEQLLPIFLSLLKD-----------EF----PDVRLNIISKLDQVNQVIGIDL--LSQS 192 (382)
Q Consensus 133 ~a~~~l~~l~~-~~~~~--~~~~~l~~~l~~~l~d-----------~~----~~vr~~~~~~l~~~~~~~~~~~--~~~~ 192 (382)
.+++++..+.. .++.. ...+..++.+.+.+.. .. +.+|..++..+..+....+... +.+.
T Consensus 208 ~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~ 287 (960)
T 1wa5_C 208 VLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINE 287 (960)
T ss_dssp HHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554431 12221 1124455666655432 11 3578888888888776554321 1234
Q ss_pred HHHHHHHHhc-----CCCchHHHHHHHHhHHHHhhhc-hh-----hhHHHHH-HHHHHHhc-------------------
Q 016814 193 LLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLG-VG-----FFDDKLG-ALCMQWLQ------------------- 241 (382)
Q Consensus 193 llp~l~~~~~-----d~~~~vr~~~~~~l~~l~~~~~-~~-----~~~~~l~-~~l~~~l~------------------- 241 (382)
+++.+.+.+. .....++..+++.+..+++.-. .. .+.+.++ +.+...+.
T Consensus 288 ~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~ 367 (960)
T 1wa5_C 288 FIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRR 367 (960)
T ss_dssp HHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHh
Confidence 4444444443 3345778888888877764211 11 2233444 44444331
Q ss_pred ----cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc------CcchHHHHHHHHHHHHhcccc-----Chh--
Q 016814 242 ----DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVM-----GSE-- 304 (382)
Q Consensus 242 ----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~-----~~~-- 304 (382)
+..+.+|.+|...+..++..+| +.....+++.+.+.+. +++|+.|++|+.+++.++... +..
T Consensus 368 d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~ 446 (960)
T 1wa5_C 368 DLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSST 446 (960)
T ss_dssp HHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCB
T ss_pred ccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccc
Confidence 1123689999999999999887 4455567777766665 678999999999999997542 111
Q ss_pred ----hhhhhhHHHHHhhccCC---CccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 305 ----ITCSRLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 305 ----~~~~~~l~~l~~~l~d~---~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
.+...+...++..+.|+ ++.+|..++.+++.+...+.+ .....+++.+.+.+.|++..||..|+.|+..+..
T Consensus 447 ~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 447 NNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 11122223344556676 788999999999999988754 4577888888888889999999999999999876
Q ss_pred H
Q 016814 378 V 378 (382)
Q Consensus 378 ~ 378 (382)
.
T Consensus 526 ~ 526 (960)
T 1wa5_C 526 I 526 (960)
T ss_dssp C
T ss_pred c
Confidence 4
No 46
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.71 E-value=1.6e-14 Score=131.35 Aligned_cols=337 Identities=13% Similarity=0.141 Sum_probs=205.3
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----H
Q 016814 38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----L 110 (382)
Q Consensus 38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~ 110 (382)
+|.+.+++.++++.++..++..|..++..-.. .......+|.+++++.++++.++..|+.+|.+++.. .++ .
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 34445555556666777777777766531111 111234567777777776677777777777776542 111 2
Q ss_pred HHHhhhHhhhhhcC-CCchHHHHHHHHHHHhhccccC-hHhHHHhhHHHHHHhh--------cC--------CChHHHHH
Q 016814 111 AIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLL--------KD--------EFPDVRLN 172 (382)
Q Consensus 111 ~~~~il~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l--------~d--------~~~~vr~~ 172 (382)
.....+|.+.+++. +.++.++..++.+|..++..-. +....+..+|.+.+++ .+ .++.+...
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 23355677777776 5666777777777777665411 1112235566666666 22 13445556
Q ss_pred HHHhhHHhhhhhch--hhHhh--hHHHHHHHHhcC------CCchHHHHHHHHhHHHHhh--------------------
Q 016814 173 IISKLDQVNQVIGI--DLLSQ--SLLPAIVELAED------RHWRVRLAIIEYIPLLASQ-------------------- 222 (382)
Q Consensus 173 ~~~~l~~~~~~~~~--~~~~~--~llp~l~~~~~d------~~~~vr~~~~~~l~~l~~~-------------------- 222 (382)
++.++..++.. .. +.+.+ ..+|.+..++.+ .+.++...++..+..++..
T Consensus 163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 66666666543 11 11111 455555555542 2333333333333332100
Q ss_pred --------h------------------------ch-hhhHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChH---
Q 016814 223 --------L------------------------GV-GFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE--- 265 (382)
Q Consensus 223 --------~------------------------~~-~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~--- 265 (382)
+ |. ..+....++.+..++.+ .++.+++.|+.+++.++..-+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 0 11 12234567777777765 46899999999999997532221
Q ss_pred ----HH-HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHHhhccCCCc------cHHHHHHHHH
Q 016814 266 ----WA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVINASKDRVP------NIKFNVAKVL 333 (382)
Q Consensus 266 ----~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l~d~~~------~vR~~a~~~l 333 (382)
.+ ....+|.+.+++.+++..++..|++++..++..-... ......+|.++..+.+.++ ++...++.++
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l 401 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHH
Confidence 11 1467899999999999999999999999998643222 3456789999999988754 4777888888
Q ss_pred HHHhhhhhHH---HHHHhHHHHHHHhcCCC-CccHHhHHHHHHHHHH
Q 016814 334 QSLIPIVDQS---MVEKTIRPCLVELTEDP-DVDVRFFATQAIQSID 376 (382)
Q Consensus 334 ~~i~~~~~~~---~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~~~ 376 (382)
+.+...-... ......++.|..++... +.+++..|...+..+.
T Consensus 402 ~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 8887533221 22357888899988887 8899999999887653
No 47
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.70 E-value=7.2e-14 Score=128.24 Aligned_cols=346 Identities=14% Similarity=0.156 Sum_probs=246.8
Q ss_pred hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 016814 32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 108 (382)
Q Consensus 32 ~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 108 (382)
.+.+.-+|.+.+++...++.++..++..|..++..-.. .......+|.+++++.+++..++..|+.+|.+++..-+.
T Consensus 44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 34455678888888889999999999999988842111 122235799999999999999999999999999763222
Q ss_pred H----HHHHhhhHhhhhhcCC-CchHHHHHHHHHHHhhccccCh-HhHHHhhHHHHHHhh------------------cC
Q 016814 109 E----LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGK-DATIEQLLPIFLSLL------------------KD 164 (382)
Q Consensus 109 ~----~~~~~il~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l------------------~d 164 (382)
+ ......+|.+..++.+ .+..++..++.+|..++..-.. ..+...-+|.+.+++ ..
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 2 3345678999999886 5788999999999999863221 222344567777765 12
Q ss_pred CChHHHHHHHHhhHHhhhhhc--hhhHh--hhHHHHHHHHhc------CCCchHHHHHHHHhHHHHhhhc----------
Q 016814 165 EFPDVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG---------- 224 (382)
Q Consensus 165 ~~~~vr~~~~~~l~~~~~~~~--~~~~~--~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~---------- 224 (382)
+++.|+..++.+|..++..-. ...+. ..+++.|..+++ +.+.+....++..|..++....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 357999999999988865321 11111 234555655543 3556777777777777664321
Q ss_pred -----------------hh-hhHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhCh--HH----H-HhhhHHHHHhh
Q 016814 225 -----------------VG-FFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP--EW----A-MQHITPQVLEM 278 (382)
Q Consensus 225 -----------------~~-~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~--~~----~-~~~l~~~l~~~ 278 (382)
.+ .+....++.+..++.+ .++.+++.|+.+|..++..-+. .. + ....+|.+.++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 11 1234567888888864 5799999999999999742211 11 1 14569999999
Q ss_pred hcCcchHHHHHHHHHHHHhccccCh-hhhhhhhHHHHHhhccCCC--------ccHHHHHHHHHHHHhhhhh---HHHHH
Q 016814 279 INNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRV--------PNIKFNVAKVLQSLIPIVD---QSMVE 346 (382)
Q Consensus 279 l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~~--------~~vR~~a~~~l~~i~~~~~---~~~~~ 346 (382)
+.+++..++..|+.++..++..-.. ..+....+|.|..+|.+.+ ..++..++.+|+.+...-. .....
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~ 443 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE 443 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999876543 3456788999999998763 4678889999998864322 12345
Q ss_pred HhHHHHHHHhcCCC--CccHHhHHHHHHHHHHH
Q 016814 347 KTIRPCLVELTEDP--DVDVRFFATQAIQSIDH 377 (382)
Q Consensus 347 ~~i~~~l~~l~~d~--~~~vr~~a~~al~~~~~ 377 (382)
...+|.|..++.+. ...++..|+.++..+..
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 67899999988875 78899999999998763
No 48
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-15 Score=126.84 Aligned_cols=184 Identities=12% Similarity=0.177 Sum_probs=98.9
Q ss_pred HHHHhcCCCchHHHHHHHHhHH-HHhhhc-----hhhhHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhC-h--H-
Q 016814 197 IVELAEDRHWRVRLAIIEYIPL-LASQLG-----VGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFG-P--E- 265 (382)
Q Consensus 197 l~~~~~d~~~~vr~~~~~~l~~-l~~~~~-----~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~-~--~- 265 (382)
+.+.+.+++|..|.+++..+.. +++... ...+ ..++..+.+.+ +|.+..||..|+.+++.+++.++ + +
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 3344455666666666666555 543211 1111 23455555555 46666666666666666665554 3 2
Q ss_pred HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-h--hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814 266 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-I--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 266 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
.+...++|.+++.++|+...+|.++..++..+.+.+++. . +.+.+++.++..++++++.+|..++.+++.+....+.
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 344455666666666665566666666655555554321 1 1345555555666655666666666666666554442
Q ss_pred --H---HHH-HhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 343 --S---MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 343 --~---~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
. ... ..++|.+.++++|++++||..|..+++.++.++|+
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 1 123 45566666666666666666666666666665554
No 49
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.68 E-value=7e-14 Score=139.04 Aligned_cols=370 Identities=12% Similarity=0.082 Sum_probs=233.0
Q ss_pred CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----cc-------ccchH
Q 016814 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT-------RMDLV 77 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~-------~~~ll 77 (382)
+++.+|..+..++..++..--+ ..|+.++|.+.+.+++++...+..++.++..+++..... .. .....
T Consensus 97 ~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~ 175 (960)
T 1wa5_C 97 LPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFT 175 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 4489999999999999987444 469999999999998888889999999999999866421 00 01122
Q ss_pred H----HH---HHhcCCCcH---HHH------HHHHHHHHHHHHh-hCHH--HHHHhhhHhhhhhcC--------C---C-
Q 016814 78 P----AY---VRLLRDNEA---EVR------IAAAGKVTKFCRI-LNPE--LAIQHILPCVKELSS--------D---S- 126 (382)
Q Consensus 78 ~----~l---~~~l~d~~~---~VR------~~a~~~l~~l~~~-~~~~--~~~~~il~~l~~~~~--------d---~- 126 (382)
| .+ .+.+.++.. .+| ..+++++..+... .+.. ......++.+...+. | .
T Consensus 176 ~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~ 255 (960)
T 1wa5_C 176 APFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEH 255 (960)
T ss_dssp HHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------C
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCccccc
Confidence 2 22 222454422 233 3344555443211 1211 111233344444331 1 1
Q ss_pred ---chHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhhc-----CCChHHHHHHHHhhHHhhhhhc------hhhHh
Q 016814 127 ---SQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIG------IDLLS 190 (382)
Q Consensus 127 ---~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-----d~~~~vr~~~~~~l~~~~~~~~------~~~~~ 190 (382)
.+.+|..+++++..+....++.. ..+.+++.+.+.+. ...+.++..++..+..+++.-. ...+.
T Consensus 256 ~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l 335 (960)
T 1wa5_C 256 ASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAM 335 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHH
Confidence 14688888998888876555332 23455555555553 3457888888888877653211 00122
Q ss_pred hhHH-HHHHHHh-----------------------cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc-----
Q 016814 191 QSLL-PAIVELA-----------------------EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ----- 241 (382)
Q Consensus 191 ~~ll-p~l~~~~-----------------------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----- 241 (382)
..++ +.+...+ .+..|..|.++...+..++..++ +...+.+++.+...+.
T Consensus 336 ~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~ 414 (960)
T 1wa5_C 336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSD 414 (960)
T ss_dssp HHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccC
Confidence 3333 2332221 12345789999999999999888 4445567777777776
Q ss_pred -cchhHHHHHHHHHHHHHHHHh-----ChH------HHHhhhHHHHHhhhcCc---chHHHHHHHHHHHHhccccChhhh
Q 016814 242 -DKVYSIRDAAANNLKRLAEEF-----GPE------WAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEIT 306 (382)
Q Consensus 242 -d~~~~vr~~a~~~l~~~~~~~-----~~~------~~~~~l~~~l~~~l~~~---~~~~r~~a~~~l~~l~~~~~~~~~ 306 (382)
+++|..|++|+.+++.++... |.. .+..-+...+...+.++ ++.+|..++++++.+++.+.++ +
T Consensus 415 ~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~ 493 (960)
T 1wa5_C 415 PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-Q 493 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-H
T ss_pred cchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-H
Confidence 678999999999999998642 111 11111222334445666 8999999999999999888654 7
Q ss_pred hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh----------HH---HHHHhHHHHHHHhcCCCC-----ccHHhHH
Q 016814 307 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----------QS---MVEKTIRPCLVELTEDPD-----VDVRFFA 368 (382)
Q Consensus 307 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~----------~~---~~~~~i~~~l~~l~~d~~-----~~vr~~a 368 (382)
...++|.+++.+.|+++.||..|+.++..+..... .+ .+...+++.|..+++... ......+
T Consensus 494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l 573 (960)
T 1wa5_C 494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL 573 (960)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence 88899999999999999999999999999887421 22 234556666666655431 1134577
Q ss_pred HHHHHHHHHHhcc
Q 016814 369 TQAIQSIDHVMMS 381 (382)
Q Consensus 369 ~~al~~~~~~~~~ 381 (382)
.+++..++..+++
T Consensus 574 ~~al~~vv~~~~~ 586 (960)
T 1wa5_C 574 MRSIFRVLQTSED 586 (960)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.67 E-value=3.3e-14 Score=118.98 Aligned_cols=226 Identities=13% Similarity=0.103 Sum_probs=144.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--h-hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhh
Q 016814 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF 228 (382)
Q Consensus 155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~ 228 (382)
+|.+.++++++++.+|..++..+..+...-+. . ......+|.+.++++++++.+|..++..+..++..-. ....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34445555555555555555555555432210 0 1112456666666666666666666666666654211 1112
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh--
Q 016814 229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-- 303 (382)
Q Consensus 229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-- 303 (382)
....+|.+..++.++++.+|..++.+++.++..... .......+|.+.+++.++++.+|..++.+++.++.....
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 224567777777777788888888888877742111 112345788888888888888888888888888754322
Q ss_pred -hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH---HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHh
Q 016814 304 -EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379 (382)
Q Consensus 304 -~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 379 (382)
.......+|.+..++.++++.+|..++.+|..+...-.. ......+++.|.+++.++++++|..|..++..+...-
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 123355788888888888888888888888888753221 1234567888888888888888999888888887654
Q ss_pred c
Q 016814 380 M 380 (382)
Q Consensus 380 ~ 380 (382)
+
T Consensus 244 ~ 244 (252)
T 4hxt_A 244 W 244 (252)
T ss_dssp B
T ss_pred C
Confidence 3
No 51
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.9e-15 Score=122.39 Aligned_cols=186 Identities=11% Similarity=0.179 Sum_probs=152.8
Q ss_pred hhccCCchHHHHHHHHHHHH-HHhccCh----hhhhhhhhhhhhhhc-cCCCHHHHHHHHHHHHHHHHHhC-Ccc---cc
Q 016814 4 WQQSNDQDSVRLLAVEGCAA-LGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG-PEP---TR 73 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~-l~~~~~~----~~~~~~ll~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~-~~~---~~ 73 (382)
..++++++..|+.|++.+.. +....+. ..-...++..+.+.+ +|++..||..++++++.+++.++ +.. +.
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 45678899999999999999 8754321 111245777888888 79999999999999999999998 543 33
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-H--HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H
Q 016814 74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-L--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D 148 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-~--~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~ 148 (382)
..++|.+++.+.|....||.++..++..+++.+++. . ..+.+++.+...+++++|.+|..++.+++.++...+. .
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~ 182 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS 182 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence 458999999999999999999999999999988432 0 1346788888899999999999999999999877663 2
Q ss_pred ---hHH-HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH
Q 016814 149 ---ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 189 (382)
Q Consensus 149 ---~~~-~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~ 189 (382)
... +.++|.+.+++.|+++.||..+..+++.+...+|.+.+
T Consensus 183 ~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 183 TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 245 78999999999999999999999999999999997544
No 52
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.66 E-value=1.2e-14 Score=121.72 Aligned_cols=227 Identities=12% Similarity=0.078 Sum_probs=155.4
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---Hh
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DA 149 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~ 149 (382)
.+|.+++++.++++.+|..|+.+|..++...+. .......+|.+.++++++++.+|..++.+++.++..-.. ..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 367777777777788888888888777654321 122345778888888888888888888888888753221 11
Q ss_pred HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch-
Q 016814 150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV- 225 (382)
Q Consensus 150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~- 225 (382)
.....+|.+..+++++++.+|..++.+++.++..-.. .......+|.+.+++.++++.+|..++..+..++.....
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2245678888888888888888888888887742111 111235678888888888888888888888887653221
Q ss_pred --hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814 226 --GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 300 (382)
Q Consensus 226 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 300 (382)
.......+|.+..++.++++.+|..++.+++.++..... .......++.+.+.+.++++.+|..|+.++..+...
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 122234778888888888888888888888888752111 112345678888888888888888888888888754
Q ss_pred cC
Q 016814 301 MG 302 (382)
Q Consensus 301 ~~ 302 (382)
.+
T Consensus 243 ~~ 244 (252)
T 4hxt_A 243 GW 244 (252)
T ss_dssp CB
T ss_pred CC
Confidence 43
No 53
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.65 E-value=5.4e-14 Score=127.89 Aligned_cols=335 Identities=14% Similarity=0.092 Sum_probs=233.5
Q ss_pred chhccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccch
Q 016814 3 AWQQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDL 76 (382)
Q Consensus 3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l 76 (382)
-.+++.+++.++..|+..+..++..-.+ .-.....+|.+.+++.++++.++..++.+|.+++..-++ .......
T Consensus 8 v~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~ 87 (457)
T 1xm9_A 8 VQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNG 87 (457)
T ss_dssp HHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 3566778899999999999999864433 223445788899999999999999999999999852111 1122457
Q ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhC-HHHHHHhhhHhhhhhc--------CCC--------chHHHHHHHHHH
Q 016814 77 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILN-PELAIQHILPCVKELS--------SDS--------SQHVRSALASVI 138 (382)
Q Consensus 77 l~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~~--------~d~--------~~~vr~~a~~~l 138 (382)
+|.+++++. +.++.+++.++.+|.+++..-. +..+.+..+|.+..++ .++ ++.+...++.+|
T Consensus 88 i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL 167 (457)
T 1xm9_A 88 IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL 167 (457)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHH
Confidence 999999998 7789999999999999987522 2223348889999988 332 355666999999
Q ss_pred HhhccccCh--HhHH--HhhHHHHHHhhcC------CChHHHHHHHHhhHHhhhhh------------------------
Q 016814 139 MGMAPLLGK--DATI--EQLLPIFLSLLKD------EFPDVRLNIISKLDQVNQVI------------------------ 184 (382)
Q Consensus 139 ~~l~~~~~~--~~~~--~~l~~~l~~~l~d------~~~~vr~~~~~~l~~~~~~~------------------------ 184 (382)
..++.. +. +... +..+|.+..++.+ .+..++..++..+..+....
T Consensus 168 ~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (457)
T 1xm9_A 168 RNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246 (457)
T ss_dssp HHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------
T ss_pred HHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccc
Confidence 999875 21 1112 2577777777653 34445555554444332100
Q ss_pred ----------------------------chh-hHhhhHHHHHHHHhcC-CCchHHHHHHHHhHHHHhhhch---h----h
Q 016814 185 ----------------------------GID-LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV---G----F 227 (382)
Q Consensus 185 ----------------------------~~~-~~~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~---~----~ 227 (382)
+.+ .+....+|.+..++.+ +++.++..++..+..++..-++ . .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~ 326 (457)
T 1xm9_A 247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI 326 (457)
T ss_dssp -------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHH
T ss_pred cchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHH
Confidence 001 1113456777777654 4678999999999998753322 1 1
Q ss_pred h-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh-HHHHhhhHHHHHhhhcCcc------hHHHHHHHHHHHHhcc
Q 016814 228 F-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPH------YLYRMTILRAISLLAP 299 (382)
Q Consensus 228 ~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~~------~~~r~~a~~~l~~l~~ 299 (382)
+ ....+|.+.+++.+++.+++..|+.++..++..-.. ..+....+|.+.+.+.+++ ..+...++.++..+..
T Consensus 327 v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~ 406 (457)
T 1xm9_A 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA 406 (457)
T ss_dssp HTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 1 134679999999999999999999999999863222 2244568899999998763 3577788888888765
Q ss_pred ccChh---hhhhhhHHHHHhhccCC-CccHHHHHHHHHHHHhh
Q 016814 300 VMGSE---ITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 300 ~~~~~---~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~i~~ 338 (382)
.-... ......+|.+..++.++ +..++..|...|..+..
T Consensus 407 ~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 407 SQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp TCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred cCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 43322 12346789999999998 89999999999987764
No 54
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.64 E-value=6.9e-17 Score=131.92 Aligned_cols=187 Identities=20% Similarity=0.232 Sum_probs=114.1
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 81 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 81 (382)
+..+++|+++.||..++..+ + ...+..+.+|+++.||..++..+ +. +.+.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~ 104 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLS 104 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGG
T ss_pred HHHHhcCCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHH
Confidence 45667777777777777632 1 12355667777777777777642 11 3455
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814 82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 161 (382)
Q Consensus 82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 161 (382)
.+++|+++.||.+++..+ + .+.+..+++|+++.||..++..+ +. +.+..+
T Consensus 105 ~ll~D~d~~VR~~aA~~l-------~--------~~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l 154 (244)
T 1lrv_A 105 ALMFDEDREVRITVADRL-------P--------LEQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRF 154 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS-------C--------TGGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGT
T ss_pred HHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHH
Confidence 667777777777776642 1 13455667777777777777631 11 133466
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc
Q 016814 162 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 241 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 241 (382)
++|+++.||..++..+ +. +.+..+++|++|.||..++..+ +. +.+..++.
T Consensus 155 ~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~ 204 (244)
T 1lrv_A 155 MRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLH 204 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGG
T ss_pred HcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHc
Confidence 7777777777776652 11 1233456777777777777653 11 23455577
Q ss_pred cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 016814 242 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAI 294 (382)
Q Consensus 242 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l 294 (382)
|++|.||..++..++ .+.+..+ +|++|.||..+...+
T Consensus 205 D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 205 DPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp CSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 777777777777653 1333344 777777777776544
No 55
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.64 E-value=1.7e-14 Score=120.83 Aligned_cols=225 Identities=14% Similarity=0.106 Sum_probs=166.0
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---H
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---D 148 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~ 148 (382)
.-.+.+.+.++++++.+|..|+.+|..+...-.. .......+|.+.++++++++.+|..++.+++.++...+. .
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4588888888999999999999999776554211 123346789999999999999999999999999863221 1
Q ss_pred hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch
Q 016814 149 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 225 (382)
Q Consensus 149 ~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 225 (382)
......+|.+.++++++++.+|..++.+++.++..-... ......+|.+.+++.++++.+|..++..+..++..-..
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 122457899999999999999999999999887543221 12245789999999999999999999999988753221
Q ss_pred ---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc
Q 016814 226 ---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 299 (382)
Q Consensus 226 ---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 299 (382)
.......+|.+..++.++++.+|..|+.+++.++..... .......++.+.+++.+++..+|..|+.++..++.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 112245678888888888899999999999888742111 11233577778888888888888888888877653
No 56
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.64 E-value=6.8e-13 Score=121.84 Aligned_cols=336 Identities=15% Similarity=0.103 Sum_probs=236.7
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC----cccccch
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDL 76 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l 76 (382)
.++..+++.++..|+..+..++..... .-.....+|.+.+++.+++..++..++.+|.+|+..-.. .......
T Consensus 55 ~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~Ga 134 (584)
T 3l6x_A 55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDG 134 (584)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCC
Confidence 456778899999999999999864322 122334678999999999999999999999999842111 1222357
Q ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhC-HHHHHHhhhHhhhhhc------------------CCCchHHHHHHHH
Q 016814 77 VPAYVRLLRD-NEAEVRIAAAGKVTKFCRILN-PELAIQHILPCVKELS------------------SDSSQHVRSALAS 136 (382)
Q Consensus 77 l~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~~------------------~d~~~~vr~~a~~ 136 (382)
+|.+++++.+ .+..+++.++.+|.+++..-. +..+....+|.|.+++ ...+..|+..++.
T Consensus 135 Ip~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~ 214 (584)
T 3l6x_A 135 VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAG 214 (584)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHH
Confidence 9999999986 578899999999999876322 2233345678887765 1235689999999
Q ss_pred HHHhhccccC--hHhHH--HhhHHHHHHhhc------CCChHHHHHHHHhhHHhhhhhc---------------------
Q 016814 137 VIMGMAPLLG--KDATI--EQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIG--------------------- 185 (382)
Q Consensus 137 ~l~~l~~~~~--~~~~~--~~l~~~l~~~l~------d~~~~vr~~~~~~l~~~~~~~~--------------------- 185 (382)
+|..++..-. +.... ..+++.+..+++ +.+....+.++.+|..++....
T Consensus 215 ~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~ 294 (584)
T 3l6x_A 215 CLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTG 294 (584)
T ss_dssp HHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------------
T ss_pred HHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccccccccc
Confidence 9999986432 12111 234445555443 3456677777777766543321
Q ss_pred ------hhh-HhhhHHHHHHHHhc-CCCchHHHHHHHHhHHHHhhhch--h----h-hHHHHHHHHHHHhccchhHHHHH
Q 016814 186 ------IDL-LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV--G----F-FDDKLGALCMQWLQDKVYSIRDA 250 (382)
Q Consensus 186 ------~~~-~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~--~----~-~~~~l~~~l~~~l~d~~~~vr~~ 250 (382)
.+. +....++.+..++. ..++.++..++.+|..++..-++ . . .....+|.+..+|.+++.+++..
T Consensus 295 ~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~ 374 (584)
T 3l6x_A 295 TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKA 374 (584)
T ss_dssp -CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHH
T ss_pred ccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence 111 11245677777774 46789999999999999743211 1 1 12456999999999999999999
Q ss_pred HHHHHHHHHHHhCh-HHHHhhhHHHHHhhhcCc--------chHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhc
Q 016814 251 AANNLKRLAEEFGP-EWAMQHITPQVLEMINNP--------HYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINAS 318 (382)
Q Consensus 251 a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~--------~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l 318 (382)
|+.+|..++..-.. +.+....+|.+..+|.++ +..++..++.+++.++..-... ......+|.|..++
T Consensus 375 A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL 454 (584)
T 3l6x_A 375 ASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLIN 454 (584)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH
Confidence 99999999875433 335667899999999876 3577888999998876432211 23456899999999
Q ss_pred cCC--CccHHHHHHHHHHHHhhh
Q 016814 319 KDR--VPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 319 ~d~--~~~vR~~a~~~l~~i~~~ 339 (382)
.+. .+.++..|+.+|..+..+
T Consensus 455 ~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 455 KSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHTS
T ss_pred hCCCCChHHHHHHHHHHHHHHcC
Confidence 886 778999999999988753
No 57
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.64 E-value=1.7e-14 Score=120.77 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=172.7
Q ss_pred HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh----hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---
Q 016814 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--- 224 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~----~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--- 224 (382)
..-++.+.+.++++++++|..++..+..+... ..+ ......+|.+.++++++++.+|..++..+..++....
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 34567778888888889999999888765543 211 1224578899999999999999999999998875221
Q ss_pred hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814 225 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 301 (382)
Q Consensus 225 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 301 (382)
........+|.+..++.++++.+|..|+.+++.++...... ......+|.+.+++.++++.+|..++.+++.++...
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 12222347889999999999999999999999997543221 234468999999999999999999999999998643
Q ss_pred Chh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH---HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814 302 GSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 302 ~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 375 (382)
... .....++|.++..+.++++.+|..++.+|+.+...-.. ......+++.|..++.+.++++|..|+.++..+
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 321 23357899999999999999999999999999853222 223456889999999999999999999999876
Q ss_pred HH
Q 016814 376 DH 377 (382)
Q Consensus 376 ~~ 377 (382)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 53
No 58
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.60 E-value=3.9e-13 Score=120.63 Aligned_cols=338 Identities=12% Similarity=0.046 Sum_probs=219.7
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCc------------HHHHHHHHHHHHHHH
Q 016814 38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNE------------AEVRIAAAGKVTKFC 103 (382)
Q Consensus 38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~d~~------------~~VR~~a~~~l~~l~ 103 (382)
++-+.+.+.+.+.. ...+.|..+....+. .......+|.|++++++++ +.+|..|+++|.+++
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 34444444444333 255555555543321 1123568999999998642 699999999999998
Q ss_pred HhhCHH---HHHHhhh----------HhhhhhcCCCc-------hHHHH-------HHHHHHHhhccccCh-H-hHHHhh
Q 016814 104 RILNPE---LAIQHIL----------PCVKELSSDSS-------QHVRS-------ALASVIMGMAPLLGK-D-ATIEQL 154 (382)
Q Consensus 104 ~~~~~~---~~~~~il----------~~l~~~~~d~~-------~~vr~-------~a~~~l~~l~~~~~~-~-~~~~~l 154 (382)
..-+.. .....++ +.+.+++..+. ..|+. .++++|+.++..-.. + ......
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~ 190 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG 190 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 754322 1111222 33333333221 12655 888888888643111 1 122456
Q ss_pred HHHHHHhhc----------C-CChHHHHHHHHhhHHhhhhhc--hhhH--hhhHHHHHHHHhcCCCchHHHHHHHHhHHH
Q 016814 155 LPIFLSLLK----------D-EFPDVRLNIISKLDQVNQVIG--IDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLL 219 (382)
Q Consensus 155 ~~~l~~~l~----------d-~~~~vr~~~~~~l~~~~~~~~--~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l 219 (382)
++.+..++. + .++.++..++.+|..++..-. +..+ ....+|.|..++.+++..++..++..|..+
T Consensus 191 l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL 270 (458)
T 3nmz_A 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270 (458)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 677777763 1 347789999999999875422 1122 245699999999999999999999999998
Q ss_pred Hhhhch---h-hhHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhCh--HHH--HhhhHHHHHhhhcCcch----HH
Q 016814 220 ASQLGV---G-FFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGP--EWA--MQHITPQVLEMINNPHY----LY 286 (382)
Q Consensus 220 ~~~~~~---~-~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~--~~~--~~~l~~~l~~~l~~~~~----~~ 286 (382)
+..-+. . ......+|.+..+ +.+.+..+++.|+.++..++..... ..+ ....+|.+.+++.+++. .+
T Consensus 271 s~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v 350 (458)
T 3nmz_A 271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 350 (458)
T ss_dssp TSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHH
T ss_pred hcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHH
Confidence 753111 1 1223467888886 4567889999999999999873211 122 34688999999886543 58
Q ss_pred HHHHHHHHHHhccc--cChh----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh-hH--HHHHHhHHHHHHHhc
Q 016814 287 RMTILRAISLLAPV--MGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-DQ--SMVEKTIRPCLVELT 357 (382)
Q Consensus 287 r~~a~~~l~~l~~~--~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~-~~--~~~~~~i~~~l~~l~ 357 (382)
+..++.++..++.. .+.+ ......+|.++.++.+.+..++..|+.+|..+...- .. .......+|.|..++
T Consensus 351 ~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 351 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 89999999988752 1222 123457899999999999999999999999997421 11 134467889999999
Q ss_pred CCCCccHHhHHHHHHHHHHHH
Q 016814 358 EDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 358 ~d~~~~vr~~a~~al~~~~~~ 378 (382)
...+.++|..|+.||..+...
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999998753
No 59
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.58 E-value=1.3e-12 Score=124.32 Aligned_cols=330 Identities=14% Similarity=0.066 Sum_probs=221.1
Q ss_pred hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc---CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCC
Q 016814 11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN 87 (382)
Q Consensus 11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~ 87 (382)
+..+..|.-++|.+-..... ..+..+.+++. ..++.+|..++.++|.+....+. ..+..+.+.+.++
T Consensus 372 ~~~k~sA~aSLGlIh~g~~~-----~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~ 441 (963)
T 4ady_A 372 NWAKFTATASLGVIHKGNLL-----EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVEN 441 (963)
T ss_dssp THHHHHHHHHHHHHTSSCTT-----THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCchH-----HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCc
Confidence 44566777777776553322 23444555554 56789999999999988755443 2456666655544
Q ss_pred c--------HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHH
Q 016814 88 E--------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL 159 (382)
Q Consensus 88 ~--------~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 159 (382)
+ +.+|..|+.+||-+.-.-+.+ .+++.+...+.|.+..+|..++.++|.+.-.-++....+.++..
T Consensus 442 ~~~~~~~~~~~ir~gAaLGLGla~~GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~-- 515 (963)
T 4ady_A 442 SGTSGDEDVDVLLHGASLGIGLAAMGSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTY-- 515 (963)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHHSTTCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHH--
Confidence 3 779999999998864433334 34566666666667788889999999774434444334444444
Q ss_pred HhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH
Q 016814 160 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 239 (382)
Q Consensus 160 ~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 239 (382)
+.++.+..+|+.++.+|+.+. +|.+...+.++.. +..+.+|.+|..++..++--...-|.... +-.++..+
T Consensus 516 -~~e~~~e~vrR~aalgLGll~--~g~~e~~~~li~~---L~~~~dp~vRygaa~alglAyaGTGn~~a---Iq~LL~~~ 586 (963)
T 4ady_A 516 -SQETQHGNITRGLAVGLALIN--YGRQELADDLITK---MLASDESLLRYGGAFTIALAYAGTGNNSA---VKRLLHVA 586 (963)
T ss_dssp -HHHCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHHH---HHHCSCHHHHHHHHHHHHHHTTTSCCHHH---HHHHHHHH
T ss_pred -HhccCcHHHHHHHHHHHHhhh--CCChHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHh
Confidence 345678899999999998773 3443222333333 34578999999998888755444444322 22234444
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 318 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l 318 (382)
..|.+..||..|+.+++.+. +|.+ ...|.+++.+ .+.++.+|..++.+++.++..-+. ..++..|..+.
T Consensus 587 ~~d~~d~VRraAViaLGlI~--~g~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~ 656 (963)
T 4ady_A 587 VSDSNDDVRRAAVIALGFVL--LRDY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLT 656 (963)
T ss_dssp HHCSCHHHHHHHHHHHHHHT--SSSC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHhhc--cCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHc
Confidence 56888999999999999876 3332 2455666544 467899999999999998754443 45667778889
Q ss_pred cCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCC--CCccHHhHHHHHHHHH
Q 016814 319 KDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED--PDVDVRFFATQAIQSI 375 (382)
Q Consensus 319 ~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~ 375 (382)
+|++..||..|+.+|+.+...-.+. .-...++..|.+...| .+...|..|.-|.+.+
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 9999999999999999998644332 1234566666666655 4566888888877754
No 60
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.58 E-value=2.9e-12 Score=127.83 Aligned_cols=359 Identities=8% Similarity=0.054 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccC-----CCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhc
Q 016814 12 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLL 84 (382)
Q Consensus 12 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d-----~~~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l 84 (382)
..|+.+.+.+..++...+ +...+.+++.+.+.+.. .+|..|++++.+++.+++.+.... ....+++.+.++.
T Consensus 436 ~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~ 514 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcC
Confidence 578889999998888776 55666777777766543 799999999999999998776533 1223555443443
Q ss_pred -CCCcHHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHH
Q 016814 85 -RDNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLS 160 (382)
Q Consensus 85 -~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~ 160 (382)
.|+++.||..++++++.+++.+... .+...++|.+...+ | +.|+..++.++..+++..+... ..+.++..+.+
T Consensus 515 ~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~ 591 (971)
T 2x1g_F 515 YEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA 591 (971)
T ss_dssp TTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 2568999999999999999987643 44556778777777 4 7899999999999997665432 23556666666
Q ss_pred hhcC--CChHHHHHHHHhhHHhhhhhchhhHh---hhHHHHH----HHHhcCC--CchHHHHHHHHhHHHH---hhhchh
Q 016814 161 LLKD--EFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAI----VELAEDR--HWRVRLAIIEYIPLLA---SQLGVG 226 (382)
Q Consensus 161 ~l~d--~~~~vr~~~~~~l~~~~~~~~~~~~~---~~llp~l----~~~~~d~--~~~vr~~~~~~l~~l~---~~~~~~ 226 (382)
++.. -+...+..+.++++.++...+.+... +.+++.+ .+.++.. +..-+......++.++ ..++..
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence 6665 35789999999999998776533221 2333333 3333333 3334455555554444 333321
Q ss_pred ---------------hhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCcchHHH
Q 016814 227 ---------------FFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYR 287 (382)
Q Consensus 227 ---------------~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r 287 (382)
.+.+.++|.+...+.+ .+..+.+.++..++.++..+|.+. +...+++.+...+.....
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~--- 748 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC--- 748 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---
Confidence 1234577777777654 366899999999999998887643 455666666666665332
Q ss_pred HHHHHHHHHhccccChh--------hhhhhhHHHHHhhccC-------CCccHHHHHHHHHHHHhhhhhHHHH-----HH
Q 016814 288 MTILRAISLLAPVMGSE--------ITCSRLLPVVINASKD-------RVPNIKFNVAKVLQSLIPIVDQSMV-----EK 347 (382)
Q Consensus 288 ~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~~~l~d-------~~~~vR~~a~~~l~~i~~~~~~~~~-----~~ 347 (382)
..+++.++.++..+|.+ .+...+...++..+.. ..++++......+..+........+ ..
T Consensus 749 ~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~ 828 (971)
T 2x1g_F 749 APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYD 828 (971)
T ss_dssp HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH
Confidence 34788888888877763 1222233333443333 2678999999999888865443222 34
Q ss_pred hHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 348 TIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 348 ~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
.+++.....+.-++......+...+..+..
T Consensus 829 ~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~ 858 (971)
T 2x1g_F 829 RLVFYAQRGMTLPESGAIRNSIQFLTHFVM 858 (971)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 555555555555566666667666665443
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.54 E-value=1.8e-12 Score=124.98 Aligned_cols=284 Identities=14% Similarity=0.176 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHhh-CHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh----HhHHHhhHHHHHHhhcCCC
Q 016814 92 RIAAAGKVTKFCRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEF 166 (382)
Q Consensus 92 R~~a~~~l~~l~~~~-~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~ 166 (382)
+..+...+..+...- +.......++..+.+.+.|+... +.++.++..+++..+. +.+.-.++|.+.....|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 344555555554321 11000125677888888887666 8999999999977753 2233346788888999999
Q ss_pred hHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCC-CchHHHHHHHHhHHHHhhhchh--hhHHHHHHHHHHHhccc
Q 016814 167 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDK 243 (382)
Q Consensus 167 ~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~ 243 (382)
..||.++..+...+...++++.. ..++|.+...+.+. .|..+..++..+..+++..+.. ...+.++|.+...+.|.
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 187 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT 187 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence 99999999999999999999888 88999999888655 6999999999999999866322 23478999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC-hhhhhhhhHHHHHhhccCCC
Q 016814 244 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRV 322 (382)
Q Consensus 244 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~ 322 (382)
.++|..+|..++..++..+++... +.++|.+++.+.+|+. +- .++..++...-.-. ..+....+.|.|.+.|+++.
T Consensus 188 k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-~~-~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~ 264 (986)
T 2iw3_A 188 KKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-VP-ETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERE 264 (986)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-HH-HHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-hH-HHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCc
Confidence 999999999999999998887654 3489999999999864 22 22344433221111 12467789999999999999
Q ss_pred ccHHHHHHHHHHHHhhhhhHH----HHHHhHHHHHHHhcC-CCCccHHhHHHHHHHHHHHHhcc
Q 016814 323 PNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTE-DPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 323 ~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
..++..++-.+..+.+-+..+ .|...++|.+.+..+ -.+|++|..|.+|+..+..+.+.
T Consensus 265 ~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 265 TGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred chhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999998876543 577899999999654 48999999999999999887653
No 62
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.54 E-value=1e-11 Score=111.44 Aligned_cols=323 Identities=12% Similarity=0.065 Sum_probs=220.6
Q ss_pred HHHHHHHHHhccCh--hhhhhhhhhhhhhhccCC------------CHHHHHHHHHHHHHHHHHhCCcccc---cchH--
Q 016814 17 AVEGCAALGKLLEP--QDCVAHILPVIVNFSQDK------------SWRVRYMVANQLYELCEAVGPEPTR---MDLV-- 77 (382)
Q Consensus 17 a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~------------~~~vR~~a~~~l~~l~~~~~~~~~~---~~ll-- 77 (382)
..+.+..+....+. .-.....+|.+.++++.. ++.+|..++.+|.+|+..-++.... ..++
T Consensus 49 ~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~ 128 (458)
T 3nmz_A 49 MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHL 128 (458)
T ss_dssp HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 44455555554432 124555888888888753 3699999999999999876553221 1133
Q ss_pred --------HHHHHhcCCCc-------HHHHH-------HHHHHHHHHHHhh--CHHHHHHhhhHhhhhhcC---------
Q 016814 78 --------PAYVRLLRDNE-------AEVRI-------AAAGKVTKFCRIL--NPELAIQHILPCVKELSS--------- 124 (382)
Q Consensus 78 --------~~l~~~l~d~~-------~~VR~-------~a~~~l~~l~~~~--~~~~~~~~il~~l~~~~~--------- 124 (382)
+.+.+++..++ ..||. .|+.+|++++..- .........++.+..++.
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~ 208 (458)
T 3nmz_A 129 LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLT 208 (458)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTC
T ss_pred HHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccc
Confidence 44444444331 11655 7888888884321 111233457777777763
Q ss_pred --CCchHHHHHHHHHHHhhccccCh--HhH--HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhhHh-hhHH
Q 016814 125 --DSSQHVRSALASVIMGMAPLLGK--DAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLS-QSLL 194 (382)
Q Consensus 125 --d~~~~vr~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~---~~~~~-~~ll 194 (382)
+.++.++..++.+|..++..-+. ... ....+|.+.+++.+++++++..++.+|..+...-+ .+.+. ...+
T Consensus 209 ~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI 288 (458)
T 3nmz_A 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCH
Confidence 23567999999999999854321 122 24568999999999999999999999998865211 12221 3468
Q ss_pred HHHHHH-hcCCCchHHHHHHHHhHHHHhhhc---hhhh-HHHHHHHHHHHhccchh----HHHHHHHHHHHHHHHH--hC
Q 016814 195 PAIVEL-AEDRHWRVRLAIIEYIPLLASQLG---VGFF-DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEE--FG 263 (382)
Q Consensus 195 p~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~---~~~~-~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~--~~ 263 (382)
|.+.++ ..+.+..++..++..+..++.... .... ....+|.+..++.+.+. ++++.|+.+|..++.. .+
T Consensus 289 ~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 368 (458)
T 3nmz_A 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368 (458)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence 888886 455678899999999998886321 2222 24578889999886543 5999999999988863 12
Q ss_pred hHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814 264 PEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 336 (382)
Q Consensus 264 ~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i 336 (382)
.+. .....+|.+..++.+++..++..|+.++..++...... ....-.+|.|..++.++++.+|..|+.+|..+
T Consensus 369 ~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448 (458)
T ss_dssp HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 221 23457899999999999999999999999997421111 23356789999999999999999999999999
Q ss_pred hhh
Q 016814 337 IPI 339 (382)
Q Consensus 337 ~~~ 339 (382)
...
T Consensus 449 ~~~ 451 (458)
T 3nmz_A 449 MAN 451 (458)
T ss_dssp HTC
T ss_pred HcC
Confidence 764
No 63
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.52 E-value=1.6e-11 Score=120.93 Aligned_cols=370 Identities=10% Similarity=0.060 Sum_probs=240.0
Q ss_pred CCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCH-HHHHHHHHHHHHHHHHhCCccc-------------c
Q 016814 8 NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGPEPT-------------R 73 (382)
Q Consensus 8 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~-~vR~~a~~~l~~l~~~~~~~~~-------------~ 73 (382)
++.+.+|.....++..++...-+ ..|+.+++-+.+++..++. ..-...++.+..+.+.+..... +
T Consensus 101 ~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lk 179 (980)
T 3ibv_A 101 DEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVK 179 (980)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHH
Confidence 35678999999999999987544 3577777777777654333 3455667777766666543210 0
Q ss_pred --------cchHHHHHHhc----CCCcHHHHHHHHHHHHHHHHhhCHHHH-HHhhhHhhhhhcCCCchHHHHHHHHHHHh
Q 016814 74 --------MDLVPAYVRLL----RDNEAEVRIAAAGKVTKFCRILNPELA-IQHILPCVKELSSDSSQHVRSALASVIMG 140 (382)
Q Consensus 74 --------~~ll~~l~~~l----~d~~~~VR~~a~~~l~~l~~~~~~~~~-~~~il~~l~~~~~d~~~~vr~~a~~~l~~ 140 (382)
..+.+...+.+ ...++.++..++++++.+...++...+ .+.+++.+..++.+ +.+|..++.++..
T Consensus 180 d~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~e 257 (980)
T 3ibv_A 180 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTE 257 (980)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHH
Confidence 11233333333 336788999999999999998877643 35688888888876 7899999999999
Q ss_pred hccccChHhHHHhhH------HHHHHhhc-CCChHHHHHHHHhhHHhhhhh-----ch-----h------hHhhhHHHHH
Q 016814 141 MAPLLGKDATIEQLL------PIFLSLLK-DEFPDVRLNIISKLDQVNQVI-----GI-----D------LLSQSLLPAI 197 (382)
Q Consensus 141 l~~~~~~~~~~~~l~------~~l~~~l~-d~~~~vr~~~~~~l~~~~~~~-----~~-----~------~~~~~llp~l 197 (382)
+...-.+......++ +.+..+.. +++.++.+..++.+..++..+ .+ + .....++|.+
T Consensus 258 i~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 337 (980)
T 3ibv_A 258 IVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYL 337 (980)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHH
T ss_pred HHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHH
Confidence 875433211111222 22222222 456777666665554433221 11 0 2225678889
Q ss_pred HHHhcCCCchHHHHHHHHhHHHHhhhc---h-----h---hhHHHHHHHHHHHhc---c----c----h-----hHHHHH
Q 016814 198 VELAEDRHWRVRLAIIEYIPLLASQLG---V-----G---FFDDKLGALCMQWLQ---D----K----V-----YSIRDA 250 (382)
Q Consensus 198 ~~~~~d~~~~vr~~~~~~l~~l~~~~~---~-----~---~~~~~l~~~l~~~l~---d----~----~-----~~vr~~ 250 (382)
..+..++++.|-..++..+..+..... . . .+...+++.+..-+. | . + .+.|+.
T Consensus 338 L~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~ 417 (980)
T 3ibv_A 338 IRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKK 417 (980)
T ss_dssp HHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHH
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHH
Confidence 999999988887777777776654321 1 1 122344444444332 1 1 0 146777
Q ss_pred HHHHHHHHHHHhChHHHHh----hhHHHHHhhhc---CcchHHHHHHHHHHHHhccccChh--------hhhhhhHHHHH
Q 016814 251 AANNLKRLAEEFGPEWAMQ----HITPQVLEMIN---NPHYLYRMTILRAISLLAPVMGSE--------ITCSRLLPVVI 315 (382)
Q Consensus 251 a~~~l~~~~~~~~~~~~~~----~l~~~l~~~l~---~~~~~~r~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~ 315 (382)
.. .+-..+..+|++.+.. .+.+.+.+.+. +.+|+.+++++.+++.+++.+... ...+.+++.+.
T Consensus 418 l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~ 496 (980)
T 3ibv_A 418 LK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILA 496 (980)
T ss_dssp HH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHH
T ss_pred HH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHH
Confidence 66 6667777788877666 55555656553 456999999999999999887531 23456777777
Q ss_pred hhcc-----CCCccHHHHHHHHHHHHhhhhhHH-HHHHhHHHHHHH--hcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 316 NASK-----DRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVE--LTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 316 ~~l~-----d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~--l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
..+. ++++.||..++++++.....+... .+...+++.+.. -+.+++..||..|+.++..+.+..+.
T Consensus 497 ~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 497 LVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 7755 888999999999999999887632 233444444444 45578899999999999999876543
No 64
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.52 E-value=4.5e-11 Score=119.27 Aligned_cols=362 Identities=10% Similarity=0.060 Sum_probs=232.4
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccC-----CCHHHHHHHHHHHHHHHHHhCCc--------------
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPE-------------- 70 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d-----~~~~vR~~a~~~l~~l~~~~~~~-------------- 70 (382)
.+.||.....++..+++.--++. |+.+++.+.+.++. +++..+..++..+..+++.....
T Consensus 116 ~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l 194 (963)
T 2x19_B 116 SKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSL 194 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCS
T ss_pred CHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHH
Confidence 58899999999999999754433 88899988888765 36678899999999998644211
Q ss_pred -ccccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC
Q 016814 71 -PTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 146 (382)
Q Consensus 71 -~~~~~ll~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 146 (382)
...+.+++.+.+.+.+.+ ..++..+++++...+. .+.. .....+++.+...+. ++.+|..+++++..+...-.
T Consensus 195 ~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~ 271 (963)
T 2x19_B 195 AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPD 271 (963)
T ss_dssp GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccc
Confidence 111236666666666543 2488888898877655 3221 111456677777764 57789999999999876432
Q ss_pred hH---hHHHhhHHHHHH-------hhcCCChHHHHHHHHhhHHhhhhhc---------hhhHhhhHHHHHHHHhcC----
Q 016814 147 KD---ATIEQLLPIFLS-------LLKDEFPDVRLNIISKLDQVNQVIG---------IDLLSQSLLPAIVELAED---- 203 (382)
Q Consensus 147 ~~---~~~~~l~~~l~~-------~l~d~~~~vr~~~~~~l~~~~~~~~---------~~~~~~~llp~l~~~~~d---- 203 (382)
.. .....+++.+.. .+.+.+.......++.+..++.... .+.+ ..+++.+..+..+
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~l~~ll~~~~~~~~~ 350 (963)
T 2x19_B 272 AQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF-LALVNMIMFCTGIPGHY 350 (963)
T ss_dssp GGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHTCSSCT
T ss_pred cccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH-HHHHHHHHHHHcCCCCC
Confidence 11 122233333322 2233445555556666655543321 1222 3556666666554
Q ss_pred -CCchHHHHHHHHhHHHHhhhc----------hh---hhHHHHHHHHHHHhccc--------------h-hHHHHHHHHH
Q 016814 204 -RHWRVRLAIIEYIPLLASQLG----------VG---FFDDKLGALCMQWLQDK--------------V-YSIRDAAANN 254 (382)
Q Consensus 204 -~~~~vr~~~~~~l~~l~~~~~----------~~---~~~~~l~~~l~~~l~d~--------------~-~~vr~~a~~~ 254 (382)
.++.+...++.....+++... .. .+...+++.+...+..+ + .+.|..+...
T Consensus 351 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~ 430 (963)
T 2x19_B 351 PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDT 430 (963)
T ss_dssp TTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHH
Confidence 355666666666666555220 11 11234455544444211 1 1347778888
Q ss_pred HHHHHHHhChHHHHhhhHHHHHhhh----cCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHH
Q 016814 255 LKRLAEEFGPEWAMQHITPQVLEMI----NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFN 328 (382)
Q Consensus 255 l~~~~~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~ 328 (382)
+..++...|.+ ....+++.+.+.+ .+++|..|++++.+++.+++.+..+ .+...+++.+.. +.++++.+|..
T Consensus 431 L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~ 508 (963)
T 2x19_B 431 LMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADT 508 (963)
T ss_dssp HHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHH
T ss_pred HHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHH
Confidence 88888777643 3445666666666 6678999999999999999887643 345566664443 44467889999
Q ss_pred HHHHHHHHhhhhhH-HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 329 VAKVLQSLIPIVDQ-SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 329 a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
++.+++.+...+.. ..+...+++.+...+++ +.|+..|+.++..++...+
T Consensus 509 ~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~ 559 (963)
T 2x19_B 509 VMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK 559 (963)
T ss_dssp HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH
Confidence 99999999987653 24567788888877765 8999999999999987543
No 65
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.52 E-value=5.4e-12 Score=125.89 Aligned_cols=362 Identities=11% Similarity=0.053 Sum_probs=226.9
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC------CHHHHHHHHHHHHHHHHHhC-Cc------------
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK------SWRVRYMVANQLYELCEAVG-PE------------ 70 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~------~~~vR~~a~~~l~~l~~~~~-~~------------ 70 (382)
.+.||.....++..+++...+ .|+.+++.+.+.++.+ ++..+..++..+..+++... .+
T Consensus 98 ~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l 175 (971)
T 2x1g_F 98 PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEI 175 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHH
Confidence 588999999999999997655 6888888888887654 56788999999998886321 11
Q ss_pred -ccccchHHHHHHhcCCC--------cHHHHHHHHHHHHHHHH--hhCHHHHHHhhhHhhhhhc----------------
Q 016814 71 -PTRMDLVPAYVRLLRDN--------EAEVRIAAAGKVTKFCR--ILNPELAIQHILPCVKELS---------------- 123 (382)
Q Consensus 71 -~~~~~ll~~l~~~l~d~--------~~~VR~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~~---------------- 123 (382)
...+.+++.+.+.+.+. .+.++..+++++..+.. ..+.. ....+++.+.. +
T Consensus 176 ~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~ 253 (971)
T 2x1g_F 176 AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCM 253 (971)
T ss_dssp HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCC
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhcccccccccccc
Confidence 00123555555554321 13799999999999887 34444 44566776665 3
Q ss_pred CCCchHHHHHHHHHHHhhccccChH---hHHHhhHHHHHHh-------hcCCC---hHHHHHHHHhhHHhhhhhch----
Q 016814 124 SDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSL-------LKDEF---PDVRLNIISKLDQVNQVIGI---- 186 (382)
Q Consensus 124 ~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~-------l~d~~---~~vr~~~~~~l~~~~~~~~~---- 186 (382)
.+.++.+|..++.++..+...-..+ .....++|.+..+ +.+++ +......++.+..+++....
T Consensus 254 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~ 333 (971)
T 2x1g_F 254 TADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLS 333 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256789999999999988642211 1223344443331 23444 36666666666665532110
Q ss_pred ---------hhHhhhHHHHHHHHhcC-----CCchHHHHHHHHhHHHHhhh-c----------hh---hhHHHHHHHHHH
Q 016814 187 ---------DLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQL-G----------VG---FFDDKLGALCMQ 238 (382)
Q Consensus 187 ---------~~~~~~llp~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~-~----------~~---~~~~~l~~~l~~ 238 (382)
......+++.+..+... .+..+...++..+..+++.. + .. .+...+++.+..
T Consensus 334 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 413 (971)
T 2x1g_F 334 GITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR 413 (971)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 01113456666665533 46778888888887776522 1 01 112344454444
Q ss_pred Hhc---cc-----h-------hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC-----cchHHHHHHHHHHHHhc
Q 016814 239 WLQ---DK-----V-------YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-----PHYLYRMTILRAISLLA 298 (382)
Q Consensus 239 ~l~---d~-----~-------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~r~~a~~~l~~l~ 298 (382)
.+. |. + ...|.++...+..++..+| +.....+++.+.+.+.. ++|..|++++.+++.++
T Consensus 414 ~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ia 492 (971)
T 2x1g_F 414 KSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVA 492 (971)
T ss_dssp HTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTT
T ss_pred HhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 432 11 0 2467888888888888776 34445566666666543 68999999999999999
Q ss_pred cccChh--hhhhhhHHHHHhhc-cCCCccHHHHHHHHHHHHhhhhhHH-HHHHhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814 299 PVMGSE--ITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTEDPDVDVRFFATQAIQS 374 (382)
Q Consensus 299 ~~~~~~--~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 374 (382)
+.+... .....+++.+..+. .|+++.||..++.+++.+...+... .+...+++.+...+ | +.|+..|+.|+..
T Consensus 493 e~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~ 569 (971)
T 2x1g_F 493 EHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKE 569 (971)
T ss_dssp TC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHH
T ss_pred hhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHH
Confidence 887753 34556666443333 2568899999999999999877632 45567777777766 4 8899999999999
Q ss_pred HHHHh
Q 016814 375 IDHVM 379 (382)
Q Consensus 375 ~~~~~ 379 (382)
+....
T Consensus 570 l~~~~ 574 (971)
T 2x1g_F 570 LCRDC 574 (971)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88654
No 66
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.52 E-value=6.6e-11 Score=118.09 Aligned_cols=360 Identities=11% Similarity=0.111 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc----cCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcC
Q 016814 12 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS----QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLR 85 (382)
Q Consensus 12 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~----~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~ 85 (382)
..|+.+.+.+..++...+ +...+.+++.+.+.+ .+.+|..|++++.+++.+++.+..+. ....+++.+.++ .
T Consensus 422 ~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~ 499 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-S 499 (963)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-C
T ss_pred HHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-C
Confidence 357888888888887665 345566677776666 67899999999999999998876532 112344433333 4
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhh
Q 016814 86 DNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLL 162 (382)
Q Consensus 86 d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l 162 (382)
++++.||..++.+++.+.+.+... .+...+++.+...+.+ +.|+..++.++..+++..+... ..+.+++.+.+++
T Consensus 500 ~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l 577 (963)
T 2x19_B 500 ISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVL 577 (963)
T ss_dssp CCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 457889999999999999876432 4566788888888866 7899999999999987554332 2355666666666
Q ss_pred cC--CChHHHHHHHHhhHHhhhhhchhhH---hhhHHHHHHHHh----cC-CCchHHH---HHHHHhHHHHhhhch----
Q 016814 163 KD--EFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELA----ED-RHWRVRL---AIIEYIPLLASQLGV---- 225 (382)
Q Consensus 163 ~d--~~~~vr~~~~~~l~~~~~~~~~~~~---~~~llp~l~~~~----~d-~~~~vr~---~~~~~l~~l~~~~~~---- 225 (382)
.. -+...|..+.++++.++...+.+.. .+.+++.+...+ +. .+...+. ..+++++.++..++.
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~ 657 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHE 657 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 54 3578999999999999877653322 234444443332 22 2444444 455666666666542
Q ss_pred --------------------hhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcC
Q 016814 226 --------------------GFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN 281 (382)
Q Consensus 226 --------------------~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~ 281 (382)
..+.+.++|.+...+.. .+..+.+.++..++.++..+|... +...+++.+...+..
T Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 737 (963)
T 2x19_B 658 DDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST 737 (963)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHc
Confidence 11335667776666542 356899999999999998887543 333344444443332
Q ss_pred cchHHHHHHHHHHHHhccccChh----h----hhhhhHHHHHhhcc-C--CCccHHHHHHHHHHHHhhhhhHHHH-----
Q 016814 282 PHYLYRMTILRAISLLAPVMGSE----I----TCSRLLPVVINASK-D--RVPNIKFNVAKVLQSLIPIVDQSMV----- 345 (382)
Q Consensus 282 ~~~~~r~~a~~~l~~l~~~~~~~----~----~~~~~l~~l~~~l~-d--~~~~vR~~a~~~l~~i~~~~~~~~~----- 345 (382)
... ...+..++.++..++.. . +.+.++..++..+. + ..+++|......+..+........+
T Consensus 738 ~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~ 814 (963)
T 2x19_B 738 IPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLD 814 (963)
T ss_dssp SCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSC
T ss_pred CCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCccc
Confidence 111 13445555555533221 1 22333333333333 2 3588999999999999876554322
Q ss_pred HHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 346 EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 346 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
...+++.+...++.++..+...+...+..+...
T Consensus 815 ~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 815 VKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 466777777778888999999999888877654
No 67
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.51 E-value=1.2e-14 Score=118.74 Aligned_cols=164 Identities=21% Similarity=0.215 Sum_probs=126.6
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 81 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 81 (382)
+..|++|+++.||..++..+ +. +.+..+++|+++.||..++..+ +. +.+.
T Consensus 79 l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ll~D~d~~VR~~aA~~l-------~~--------~~L~ 128 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL-------PR--------EQLSALMFDEDREVRITVADRL-------PL--------EQLE 128 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGTTTCSCHHHHHHHHHHS-------CT--------GGGG
T ss_pred HHHHccCcCHHHHHHHHHHC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHH
Confidence 57889999999999998642 22 3567889999999999999853 11 2345
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814 82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 161 (382)
Q Consensus 82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 161 (382)
.+++|+++.||.+++..+ + .+.+..+++|+++.||..++..+ +. +.+..+
T Consensus 129 ~L~~D~d~~VR~~aA~~l-------~--------~~~l~~l~~D~d~~VR~~aa~~l-------~~--------~ll~~l 178 (244)
T 1lrv_A 129 QMAADRDYLVRAYVVQRI-------P--------PGRLFRFMRDEDRQVRKLVAKRL-------PE--------ESLGLM 178 (244)
T ss_dssp GGTTCSSHHHHHHHHHHS-------C--------GGGGGGTTTCSCHHHHHHHHHHS-------CG--------GGGGGS
T ss_pred HHHcCCCHHHHHHHHHhc-------C--------HHHHHHHHcCCCHHHHHHHHHcC-------CH--------HHHHHH
Confidence 678999999999998732 1 24567889999999999998861 21 345578
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc
Q 016814 162 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 241 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 241 (382)
++|+++.||..++..+ +. +.+..+++|++|.||..++..++ .+.+..+ +
T Consensus 179 l~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~d~~VR~~aa~~l~---------------~~~L~~L-~ 227 (244)
T 1lrv_A 179 TQDPEPEVRRIVASRL-------RG--------DDLLELLHDPDWTVRLAAVEHAS---------------LEALREL-D 227 (244)
T ss_dssp TTCSSHHHHHHHHHHC-------CG--------GGGGGGGGCSSHHHHHHHHHHSC---------------HHHHHHC-C
T ss_pred HcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHcCC---------------HHHHHHc-c
Confidence 9999999999999874 21 33556689999999999999975 1345556 9
Q ss_pred cchhHHHHHHHHHHH
Q 016814 242 DKVYSIRDAAANNLK 256 (382)
Q Consensus 242 d~~~~vr~~a~~~l~ 256 (382)
|++|.||..+...+|
T Consensus 228 D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 228 EPDPEVRLAIAGRLG 242 (244)
T ss_dssp CCCHHHHHHHHCCC-
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999988765
No 68
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.51 E-value=3.2e-11 Score=120.99 Aligned_cols=366 Identities=12% Similarity=0.072 Sum_probs=239.3
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cc------------c--
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EP------------T-- 72 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~------------~-- 72 (382)
++.+|...+.++..+++.--+ ..|+.+++.+.+.++ .++..+..+...|..+++.+.. +. .
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~ 190 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK 190 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 478999999999999997544 458899998888886 5667788888888888865542 10 0
Q ss_pred -ccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHH-HHHhhhHhhhh-hcCCCchHHHHHHHHHHHhhccc-cCh
Q 016814 73 -RMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPEL-AIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPL-LGK 147 (382)
Q Consensus 73 -~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~-~~~~il~~l~~-~~~d~~~~vr~~a~~~l~~l~~~-~~~ 147 (382)
...+++.+.+.+.+ ++..++..+++++..+....+... ..+.+++.+.+ ++ .++.+|..++.++..+... .++
T Consensus 191 ~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~ 268 (1049)
T 3m1i_C 191 EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQ 268 (1049)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCc
Confidence 11244555555543 357899999999999887766443 22345565553 33 2688999999999988754 222
Q ss_pred H--hHH-------HhhHHHHHH-h-------------hcCCChHHHHHHHHhhHHhhhhhch--------hhHhhhHHHH
Q 016814 148 D--ATI-------EQLLPIFLS-L-------------LKDEFPDVRLNIISKLDQVNQVIGI--------DLLSQSLLPA 196 (382)
Q Consensus 148 ~--~~~-------~~l~~~l~~-~-------------l~d~~~~vr~~~~~~l~~~~~~~~~--------~~~~~~llp~ 196 (382)
. ... ..++..+.. + ..+.+.+.....++.+..+...+.. ......+++.
T Consensus 269 ~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 348 (1049)
T 3m1i_C 269 DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQY 348 (1049)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Confidence 1 011 112222211 0 1234455555666665554432110 1112456777
Q ss_pred HHHHhcCCCchHHHHHHHHhHHHHhhh-----chhh---hHHHHHHHHHHHhcc----------------------chhH
Q 016814 197 IVELAEDRHWRVRLAIIEYIPLLASQL-----GVGF---FDDKLGALCMQWLQD----------------------KVYS 246 (382)
Q Consensus 197 l~~~~~d~~~~vr~~~~~~l~~l~~~~-----~~~~---~~~~l~~~l~~~l~d----------------------~~~~ 246 (382)
+..+...++..++..+++.+..+++.+ .... +...+++.+...+.- .++.
T Consensus 349 ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~ 428 (1049)
T 3m1i_C 349 LIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ 428 (1049)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence 777777778888888888888877632 1122 234555665554311 0125
Q ss_pred HHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc--CcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhcc--
Q 016814 247 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASK-- 319 (382)
Q Consensus 247 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~-- 319 (382)
.|.++...+..++. .+++.....+.+.+.+.+. ..+|+.|++++.+++.++..++.. .+...+++.+.....
T Consensus 429 ~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~ 507 (1049)
T 3m1i_C 429 LYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK 507 (1049)
T ss_dssp HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence 57777788888775 4455555666677766665 367999999999999998877654 345667776666432
Q ss_pred ---CCCccHHHHHHHHHHHHhhhhhH-HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 320 ---DRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 320 ---d~~~~vR~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
|+.+.+|..++.+++.....+.. ..+...+++.+...+.|+++.||..|+.|+..++...+
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34566777899999988776543 34566777878888889999999999999999987543
No 69
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.51 E-value=1.2e-12 Score=106.23 Aligned_cols=187 Identities=15% Similarity=0.108 Sum_probs=138.0
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--- 264 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--- 264 (382)
+...|.+..++.++++.+|..++..+..++..-.. .......+|.+..++.++++.+|..|+.+++.++.....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 44566777777788888888888888877642211 122235678888888888889999999988888742111
Q ss_pred HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814 265 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 265 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 341 (382)
.......+|.+..++.+++..+|..++.++..++...... ......+|.++..+.++++.+|..++.+|..+.....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 1233457889999999999999999999999988533221 2345688999999999999999999999999986522
Q ss_pred HH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 342 QS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 342 ~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
.. ......++.|.+++.++++++|..|..++..++.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 21 2345788999999999999999999999988753
No 70
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.49 E-value=1.2e-12 Score=106.26 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=138.1
Q ss_pred hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--
Q 016814 33 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-- 107 (382)
Q Consensus 33 ~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-- 107 (382)
..+...|.+..+++++++.+|..++..|..++..-.. .......+|.+++++.++++.+|..|+.+|++++....
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3455677888899999999999999999999842111 11223579999999999999999999999999874221
Q ss_pred -HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH---hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 108 -PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 108 -~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
........+|.+..+++++++.+|..++.+++.++...... ......+|.+.++++++++.+|..++.++..++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11333468899999999999999999999999998643221 12356789999999999999999999999988754
Q ss_pred hchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814 184 IGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 220 (382)
Q Consensus 184 ~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 220 (382)
-... ......+|.+.+++.+++..+|..++..+..++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 2111 112345677777777777777777777776654
No 71
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.48 E-value=7e-11 Score=110.43 Aligned_cols=370 Identities=9% Similarity=0.029 Sum_probs=247.8
Q ss_pred cCCchHHHHHHHHHHHHHHhccC-hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc-ccccchHHHHHHhc
Q 016814 7 SNDQDSVRLLAVEGCAALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLL 84 (382)
Q Consensus 7 ~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l 84 (382)
..++..+...+++.+...+-.-. .+.+.+...+.+.+.+++ ..+|..++-.|.++...-+.. .....+.+.+.+.+
T Consensus 266 ~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L 343 (778)
T 3opb_A 266 EEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAI 343 (778)
T ss_dssp SSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence 34555566666666665543211 123344555666676654 477888888888877544332 22245888888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCH-HHH--HHhhhHhhhhhcCC-CchHHHHHHHHHHHhhccccCh-------------
Q 016814 85 RDNEAEVRIAAAGKVTKFCRILNP-ELA--IQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGK------------- 147 (382)
Q Consensus 85 ~d~~~~VR~~a~~~l~~l~~~~~~-~~~--~~~il~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~------------- 147 (382)
.+++...|..|++.|..+...-.. +.+ .+.+++.+.+++++ .+..+--.++..+..+....+.
T Consensus 344 ~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~ 423 (778)
T 3opb_A 344 SRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXX 423 (778)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------
T ss_pred hcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhh
Confidence 887666699999999988532111 111 13456777777764 4556677777777777542210
Q ss_pred -------------H-----------h----HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHH
Q 016814 148 -------------D-----------A----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAI 197 (382)
Q Consensus 148 -------------~-----------~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l 197 (382)
. . .....+|.+..+++.+++.+|..+++++..++..-.. ....+..+|.+
T Consensus 424 ~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~L 503 (778)
T 3opb_A 424 XXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKII 503 (778)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHH
T ss_pred hccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 0 0 1145778888999999999999999999999754211 12235568888
Q ss_pred HHHhcCCCch---HHHHHHHHhHHHHhhhchhhhH-----HHHHHHHHHHhcc-chh-------------HHHHHHHHHH
Q 016814 198 VELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLQD-KVY-------------SIRDAAANNL 255 (382)
Q Consensus 198 ~~~~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-------------~vr~~a~~~l 255 (382)
..++.+.... .|..++.+|..+.....+.... ...+|.+..+|.. +.. --+..|+.+|
T Consensus 504 L~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~AL 583 (778)
T 3opb_A 504 LEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLAL 583 (778)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHH
Confidence 8888766543 8999999999988554433211 1467888888872 221 2277899999
Q ss_pred HHHHHHhCh--H-----HHH-hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh--hhhhh----h---hHHHHHhhc
Q 016814 256 KRLAEEFGP--E-----WAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCS----R---LLPVVINAS 318 (382)
Q Consensus 256 ~~~~~~~~~--~-----~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~----~---~l~~l~~~l 318 (382)
..++..-+. + .+. ...+|.+.+++.+.+..+|.+|+++++.++..-.. ..+.. . =++.++.++
T Consensus 584 TNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll 663 (778)
T 3opb_A 584 TNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL 663 (778)
T ss_dssp HHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG
T ss_pred HHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH
Confidence 999975321 1 123 25889999999999999999999999999854321 12211 1 277889999
Q ss_pred cCCCccHHHHHHHHHHHHhhhhhH--H-HHH-HhHHHHHHHhcCC--CCccHHhHHHHHHHHHHHH
Q 016814 319 KDRVPNIKFNVAKVLQSLIPIVDQ--S-MVE-KTIRPCLVELTED--PDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 319 ~d~~~~vR~~a~~~l~~i~~~~~~--~-~~~-~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~~~ 378 (382)
..++..+|.+|+.+|..+....+. + ... ...++.+..++.+ .+.++|..++.++..++.+
T Consensus 664 ~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 664 QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998643332 1 222 2566777778878 8999999999999999864
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.47 E-value=2.1e-11 Score=116.24 Aligned_cols=302 Identities=11% Similarity=0.029 Sum_probs=205.7
Q ss_pred CCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCC--------HHHHHHHHHHHHHHHHHhCCcccccchHHH
Q 016814 8 NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS--------WRVRYMVANQLYELCEAVGPEPTRMDLVPA 79 (382)
Q Consensus 8 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~--------~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~ 79 (382)
.+++.+|..|+-++|.+......+ .+..+.+.+.+++ +.+|..++..||.+.- |... .++++.
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~--GS~~--eev~e~ 476 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM--GSAN--IEVYEA 476 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST--TCCC--HHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc--CCCC--HHHHHH
Confidence 567899999999999998877642 3444444444333 7899999999997553 3321 346777
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHH
Q 016814 80 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL 159 (382)
Q Consensus 80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 159 (382)
+.+.+.|++..+|..|+.++|-+.-.-+.+...+.++..+. ++.+..+|+.++..|+-+. +|++...+.+ +.
T Consensus 477 L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~~e~~~~l---i~ 548 (963)
T 4ady_A 477 LKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGRQELADDL---IT 548 (963)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTCGGGGHHH---HH
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCChHHHHHH---HH
Confidence 78777777788898898888876333333434444544443 4667789999999999774 3443333333 33
Q ss_pred HhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH
Q 016814 160 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 239 (382)
Q Consensus 160 ~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 239 (382)
.+..+.++.+|..++.+++--....|.....+. .+..+.+|.+..||+.++..++.+.- |... .+...+..+
T Consensus 549 ~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~---LL~~~~~d~~d~VRraAViaLGlI~~--g~~e---~v~rlv~~L 620 (963)
T 4ady_A 549 KMLASDESLLRYGGAFTIALAYAGTGNNSAVKR---LLHVAVSDSNDDVRRAAVIALGFVLL--RDYT---TVPRIVQLL 620 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHH---HHHHHHHCSCHHHHHHHHHHHHHHTS--SSCS---SHHHHTTTG
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHH---HHHHhccCCcHHHHHHHHHHHHhhcc--CCHH---HHHHHHHHH
Confidence 444578999999998888755444444322233 34444578888999999999987753 2221 122233335
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhh
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINA 317 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~ 317 (382)
..+.++.||..++.++|.+...-+. ..++..+..+..|++..||..|+.+++.++...... +-...++..+...
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 5678999999999999998743333 346777788889999999999999999987443322 2345566666777
Q ss_pred ccC--CCccHHHHHHHHHHHHhh
Q 016814 318 SKD--RVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 318 l~d--~~~~vR~~a~~~l~~i~~ 338 (382)
..| +.+..|..+.-+.|.+..
T Consensus 697 ~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 697 ITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHTT
T ss_pred HhcccccHHHHHHHHHHHHHHhc
Confidence 665 446689999888888753
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.43 E-value=5.8e-10 Score=83.56 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=158.0
Q ss_pred HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHH-hcCCCchHHHHHHHHhHHHHhhhchhhhHH
Q 016814 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDD 230 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 230 (382)
+.++..+..++.|.-+.|+.+++..+..+.+..+. .+ +.++..+..+ -+++.-..-..+++.++.++. ..|+.. .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~-epl~~kL~vm~~ksEaIpltqeIa~a~G~la~-i~Pe~v-~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LY-EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-EKPELV-K 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-HCHHHH-H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HH-HHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-hCHHHH-H
Confidence 56677777888888888888888888888776542 11 2333333333 356666667788888888875 444443 4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhh
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL 310 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 310 (382)
.++|.+..-..-.++.+|-....+++.++... + .....+..-+..++.+++..-|.+|+.+++.++.+-. .+..=+
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaran-P-~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~--~yv~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKAN-P-MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF--KYVNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-H-HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH--HHHGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhC-h-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc--cccCcc
Confidence 68888887777778999999999999998764 2 2344566777888899999999999999998875422 256678
Q ss_pred HHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 311 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 311 l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
+|.++.+|.|.+.-||.++.++|+.++..-. .+ ..+.....+=++|++..|......+++.+.-.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~np--kl-Rkii~~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLND--KL-RKVVIKRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HH-HHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999986432 22 33333333457899999999999999887643
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.42 E-value=2.9e-11 Score=116.68 Aligned_cols=280 Identities=14% Similarity=0.172 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHHHhcc-ChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC----cccccchHHHHHHhcCC
Q 016814 12 SVRLLAVEGCAALGKLL-EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRD 86 (382)
Q Consensus 12 ~vR~~a~~~l~~l~~~~-~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~l~d 86 (382)
.-|+.++..+..+...- ........+...+.+.+.|+... +.++..++.+++..+. +.+.-.++|.++..+.|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d 106 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN 106 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC
Confidence 34455665666554422 22222235777788888887555 9999999999977754 22223468999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhhc
Q 016814 87 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK 163 (382)
Q Consensus 87 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~ 163 (382)
....||.+|-.+...+...++++.. ..++|.+.+.+++. .|..+..++..+..++...+.+. ..+.++|.+.+.+-
T Consensus 107 k~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 185 (986)
T 2iw3_A 107 KDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW 185 (986)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcc
Confidence 9999999999999999999998866 67889999888655 69999999999999997664332 35899999999999
Q ss_pred CCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-c---hhhhHHHHHHHHHHH
Q 016814 164 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-G---VGFFDDKLGALCMQW 239 (382)
Q Consensus 164 d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~---~~~~~~~l~~~l~~~ 239 (382)
|.-++|...+.+++..++..++..++ +.++|.+.+++.+++. .-+++..++..- - ......-+.|++...
T Consensus 186 d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~ 259 (986)
T 2iw3_A 186 DTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRG 259 (986)
T ss_dssp CSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhh
Confidence 99999999999999999999988888 8899999999988843 344444443211 0 112235789999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChH----HHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhccc
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPV 300 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~ 300 (382)
|+++...++..++-.+..+++..... .|...++|.+...... .++.+|+.+-.++..+.+.
T Consensus 260 l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 260 LNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred hccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999877653 3566677777665543 4689999998888887543
No 75
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1e-09 Score=102.75 Aligned_cols=366 Identities=11% Similarity=0.119 Sum_probs=237.5
Q ss_pred CCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc----cC--CCH-HHHHHHHHHHHHHHHHhCCcccc-cchHHH
Q 016814 8 NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS----QD--KSW-RVRYMVANQLYELCEAVGPEPTR-MDLVPA 79 (382)
Q Consensus 8 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~----~d--~~~-~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~ 79 (382)
-+.+.||..++-.+..+-+..+ +.+.+.+..++..++ .| .++ .+--.++..+..+...+....+. ....|.
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~ 259 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL 259 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence 3467888888888777776554 455566666666555 22 221 22222222222222222222222 235666
Q ss_pred HHHhc-CCCcHHHHHHHHHHHHHHHH--hhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-HhHHHhhH
Q 016814 80 YVRLL-RDNEAEVRIAAAGKVTKFCR--ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-DATIEQLL 155 (382)
Q Consensus 80 l~~~l-~d~~~~VR~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~ 155 (382)
+.+.+ ..++..+..++++.+...+. .+ .+.+.++.++.+.+.+++ ..+|..++-.|..+...-+. +.....+.
T Consensus 260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~c-R~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La 336 (778)
T 3opb_A 260 FKKRVFEEQDLQFTKELLRLLSSACIDETM-RTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLS 336 (778)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhCCcHH-HHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 66665 34567788888888877653 23 445667788999998876 47888888888887654332 22346788
Q ss_pred HHHHHhhcCCChHHHHHHHHhhHHhhhhhch-hhH--hhhHHHHHHHHhcC-CCchHHHHHHHHhHHHHhhhc-------
Q 016814 156 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLL--SQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLG------- 224 (382)
Q Consensus 156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-~~~--~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~------- 224 (382)
+.+.+.+.++....|..+++.|..+.-.... +.+ .+.+++.+.+++++ .+..+...++..+..+.....
T Consensus 337 ~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~ 416 (778)
T 3opb_A 337 EIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX 416 (778)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence 9999998887766688898888876432111 111 13456777777764 455566666666665543111
Q ss_pred -------------hh---------------------hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHH
Q 016814 225 -------------VG---------------------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAM 268 (382)
Q Consensus 225 -------------~~---------------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~ 268 (382)
++ ......+|.+..+++++++.+|+.+++++..++..-.. ....
T Consensus 417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq 496 (778)
T 3opb_A 417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ 496 (778)
T ss_dssp ------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred hhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 01123688899999999999999999999999854221 2244
Q ss_pred hhhHHHHHhhhcCcchH---HHHHHHHHHHHhccccChhhhh-----hhhHHHHHhhccC-CCcc-------------HH
Q 016814 269 QHITPQVLEMINNPHYL---YRMTILRAISLLAPVMGSEITC-----SRLLPVVINASKD-RVPN-------------IK 326 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~---~r~~a~~~l~~l~~~~~~~~~~-----~~~l~~l~~~l~d-~~~~-------------vR 326 (382)
...++.++.++.+.... .|..|+.++..+.-...+...+ ...+|.|+.+|.. +... -+
T Consensus 497 qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~ 576 (778)
T 3opb_A 497 QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDN 576 (778)
T ss_dssp TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHH
T ss_pred CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHH
Confidence 56788899998876543 8999999999987554443211 2688999999882 2211 27
Q ss_pred HHHHHHHHHHhhhhhH-------HHHH-HhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 327 FNVAKVLQSLIPIVDQ-------SMVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 327 ~~a~~~l~~i~~~~~~-------~~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
..|+.+|+.++..-++ ..+. ...+|.|..++.+.+..||.+|++++..++.
T Consensus 577 feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 577 YEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 7899999999886522 1333 2689999999988899999999999999874
No 76
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.41 E-value=3.7e-11 Score=98.48 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=89.8
Q ss_pred cCCCchHHHHHHHHhHHHHhhhchhhhH--HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH------HHHhhhHH
Q 016814 202 EDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE------WAMQHITP 273 (382)
Q Consensus 202 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~------~~~~~l~~ 273 (382)
-+++|+.|..+++.+.........+.+. +-+++-+.-.+.|++..|-..+++.+..++..++.. .-...++|
T Consensus 56 fs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP 135 (266)
T 2of3_A 56 FHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVP 135 (266)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3445555555555555544332221111 112222222233556666666666666655444321 11234566
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHH---
Q 016814 274 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR--- 350 (382)
Q Consensus 274 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~--- 350 (382)
.+++.++|+...+|..+-..+..+...++++ .+++.+...+++.|+.+|..++..++.+...+|.. ....+
T Consensus 136 ~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~ 209 (266)
T 2of3_A 136 YLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVE 209 (266)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccch
Confidence 6666666666666666666655555444432 34444555556666666666666666666655543 23344
Q ss_pred HHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 351 PCLVELTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 351 ~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
|.+.++++|+|.+||.+|..++..+....|+
T Consensus 210 ~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 210 KTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 5566666666666666666666666555554
No 77
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.38 E-value=6.7e-10 Score=111.52 Aligned_cols=370 Identities=8% Similarity=0.013 Sum_probs=231.9
Q ss_pred CchHHHHHHHHHHHHHHhccC---h------------hhh---hhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC
Q 016814 9 DQDSVRLLAVEGCAALGKLLE---P------------QDC---VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP 69 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~~---~------------~~~---~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~ 69 (382)
.++..+..+..++..+..... . +.+ .+.+++.+.+.++ ..+..++..+++++.......+.
T Consensus 149 ~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~ 228 (1049)
T 3m1i_C 149 SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY 228 (1049)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT
T ss_pred cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH
Confidence 344556667777776664321 1 111 2334555555554 34678999999999877654443
Q ss_pred cc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-----HHH----HhhhHhhhh--------------hcC
Q 016814 70 EP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-----LAI----QHILPCVKE--------------LSS 124 (382)
Q Consensus 70 ~~-~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~-~~~-----~~~----~~il~~l~~--------------~~~ 124 (382)
.. ....+++.+.+.+. .++.+|.+|++++..++..- ++. ... ..++..+.. ..+
T Consensus 229 ~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~ 307 (1049)
T 3m1i_C 229 RYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANAN 307 (1049)
T ss_dssp HHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTC
T ss_pred HHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCC
Confidence 22 22456777663222 26889999999999988652 221 100 112222211 123
Q ss_pred CCchHHHHHHHHHHHhhccccC------h--HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh--c---hhh---
Q 016814 125 DSSQHVRSALASVIMGMAPLLG------K--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--G---IDL--- 188 (382)
Q Consensus 125 d~~~~vr~~a~~~l~~l~~~~~------~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~--~---~~~--- 188 (382)
|.+..+....++.+..+++... + ......+++.+......++.+++..++..+..+.+.+ . ...
T Consensus 308 ~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~ 387 (1049)
T 3m1i_C 308 GNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEE 387 (1049)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 4556666666666655543211 0 1123456677777767778899999988887776632 1 111
Q ss_pred HhhhHHHHHHHHhc---CCC-------------------chHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc--cch
Q 016814 189 LSQSLLPAIVELAE---DRH-------------------WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKV 244 (382)
Q Consensus 189 ~~~~llp~l~~~~~---d~~-------------------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~ 244 (382)
+...+++.+...+. |.. |..|..+...+..++. .++....+.+.+.+...+. ..+
T Consensus 388 ~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~ 466 (1049)
T 3m1i_C 388 ICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWS 466 (1049)
T ss_dssp HHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCC
Confidence 12334444444321 111 2346677777777764 4444445667777777775 468
Q ss_pred hHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhc-----CcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHH
Q 016814 245 YSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN-----NPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVI 315 (382)
Q Consensus 245 ~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~ 315 (382)
|..|++++.+++.+++.++.+ .+...+++.+..+.. ++++.+|..++++++++++.+... .+...+++.++
T Consensus 467 W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll 546 (1049)
T 3m1i_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLF 546 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999998766553 234556666555332 345667778999999988765532 47788899999
Q ss_pred hhccCCCccHHHHHHHHHHHHhhhhhHH----------HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 316 NASKDRVPNIKFNVAKVLQSLIPIVDQS----------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 316 ~~l~d~~~~vR~~a~~~l~~i~~~~~~~----------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
..+.|+++.||..|+.++..++...+.. .+...++..+..+..+.+.+-+....++++.++...+
T Consensus 547 ~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 547 EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999876643 2245666666666777666667788888888877665
No 78
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.38 E-value=8.1e-12 Score=105.85 Aligned_cols=182 Identities=16% Similarity=0.172 Sum_probs=125.4
Q ss_pred HHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH-------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH----
Q 016814 197 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---- 265 (382)
Q Consensus 197 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---- 265 (382)
+.+-+.+++|..|..+++.+..+.......... ..+.+.+...+.|.+..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 445667888888888888887766543321111 123456667778888888888888888888765532
Q ss_pred ----HHHhhhHHHHHhh-hcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814 266 ----WAMQHITPQVLEM-INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 266 ----~~~~~l~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 340 (382)
.+...++|.+++. +.|+...+|..+..++..++...+. ...+++.+...+++.+|.+|..++.+|..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 1335567777764 6788888888888888777654442 2345566777888888888888888888888777
Q ss_pred hHH-----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814 341 DQS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 341 ~~~-----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 381 (382)
|.. .....+++.+.++++|++++||..|...+..+...+|+
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 643 23345666777788888888888888888888887774
No 79
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.37 E-value=1.3e-10 Score=101.19 Aligned_cols=253 Identities=13% Similarity=0.046 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHHhC--CcccccchHHHHHHhcC----------C-CcHHHHHHHHHHHHHHHHhhC--HHHH--HH
Q 016814 51 RVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLR----------D-NEAEVRIAAAGKVTKFCRILN--PELA--IQ 113 (382)
Q Consensus 51 ~vR~~a~~~l~~l~~~~~--~~~~~~~ll~~l~~~l~----------d-~~~~VR~~a~~~l~~l~~~~~--~~~~--~~ 113 (382)
.....++..|++++..-. ........+|.+++++. + .++.++..|+.+|.+++..-. +..+ ..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 444566777777763210 01112346777777763 1 247799999999999975322 1222 24
Q ss_pred hhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---Hh-HHHhhHHHHHHh-hcCCChHHHHHHHHhhHHhhhhhc--h
Q 016814 114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DA-TIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIG--I 186 (382)
Q Consensus 114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~~~~~l~~~~~~~~--~ 186 (382)
.++|.+..++.+.++.++..++.+|..++..-+. +. .....+|.+.++ .+..++.++..++.++..++.... .
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 5699999999999999999999999999754221 11 224567888886 566788999998888888875221 1
Q ss_pred hhH--hhhHHHHHHHHhcCCCc----hHHHHHHHHhHHHHhhh--chhh----hHHHHHHHHHHHhccchhHHHHHHHHH
Q 016814 187 DLL--SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQL--GVGF----FDDKLGALCMQWLQDKVYSIRDAAANN 254 (382)
Q Consensus 187 ~~~--~~~llp~l~~~~~d~~~----~vr~~~~~~l~~l~~~~--~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~ 254 (382)
..+ ....+|.|.+++.+.+. .++..++..|..++..+ +++. .....+|.+..++.+.+..+++.|+.+
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 286 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 286 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence 222 24678999999876654 58899999998887531 2211 123468999999999999999999999
Q ss_pred HHHHHHHhChH----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh
Q 016814 255 LKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304 (382)
Q Consensus 255 l~~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 304 (382)
+..++.. ..+ ......+|.+.+++.+++..+|+.|+.++..++..-+..
T Consensus 287 L~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 287 LWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9999742 111 133467899999999999999999999999998764443
No 80
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.36 E-value=4.7e-10 Score=110.65 Aligned_cols=337 Identities=12% Similarity=0.159 Sum_probs=214.5
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC-HHHHHHhhh-
Q 016814 40 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PELAIQHIL- 116 (382)
Q Consensus 40 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il- 116 (382)
++..+....++.++..++++++....-.+.... ...+++.+.+++.+ +.+|.+|+++|..+...-. ++.. ..++
T Consensus 197 iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k-~~li~ 273 (980)
T 3ibv_A 197 MMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEK-LNLLN 273 (980)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHH-HHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhH-HHHHH
Confidence 333333346778888999998887764433322 24688999999886 7899999999999876543 3321 1111
Q ss_pred -----HhhhhhcC-CCchHHHHHHHHHHHhhccc------cC----hH------hHHHhhHHHHHHhhcCCChHHHHHHH
Q 016814 117 -----PCVKELSS-DSSQHVRSALASVIMGMAPL------LG----KD------ATIEQLLPIFLSLLKDEFPDVRLNII 174 (382)
Q Consensus 117 -----~~l~~~~~-d~~~~vr~~a~~~l~~l~~~------~~----~~------~~~~~l~~~l~~~l~d~~~~vr~~~~ 174 (382)
+.+..+.. +.+..++...++.+..++.. .+ .+ .....++|.+..+..+++.+|-..++
T Consensus 274 ~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~ 353 (980)
T 3ibv_A 274 ILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVF 353 (980)
T ss_dssp HHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTH
T ss_pred HHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 22222222 45666666666655444321 11 00 23357889999999888888888777
Q ss_pred HhhHHhhhhhch--------hhH---hhhHHHHHHHHh---cCCCc-------------hHHHHHHHHhHHHHhhhchhh
Q 016814 175 SKLDQVNQVIGI--------DLL---SQSLLPAIVELA---EDRHW-------------RVRLAIIEYIPLLASQLGVGF 227 (382)
Q Consensus 175 ~~l~~~~~~~~~--------~~~---~~~llp~l~~~~---~d~~~-------------~vr~~~~~~l~~l~~~~~~~~ 227 (382)
..+..+...... +.+ ...+++.+..-+ .|.+| ..|+... .+-.....+|++.
T Consensus 354 ~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~ 432 (980)
T 3ibv_A 354 PFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSL 432 (980)
T ss_dssp HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHH
Confidence 776665543221 111 122233322222 12122 3566666 6666667778877
Q ss_pred hHH----HHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHhChH--------HHHhhhHHHHHhhhc-----CcchHHH
Q 016814 228 FDD----KLGALCMQWL---QDKVYSIRDAAANNLKRLAEEFGPE--------WAMQHITPQVLEMIN-----NPHYLYR 287 (382)
Q Consensus 228 ~~~----~l~~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~~--------~~~~~l~~~l~~~l~-----~~~~~~r 287 (382)
+.+ .+.+.+.+.+ .+.+|+.+++++.+++.+++.+... .....+++.+..++. ++++.+|
T Consensus 433 ~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~ 512 (980)
T 3ibv_A 433 FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQ 512 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 777 5666666655 3568999999999999999876531 112346666666654 7889999
Q ss_pred HHHHHHHHHhccccChh-hhhhhhHHHHHh--hccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCC---
Q 016814 288 MTILRAISLLAPVMGSE-ITCSRLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED--- 359 (382)
Q Consensus 288 ~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~--~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d--- 359 (382)
.++++++++.++.+... .+...+++.++. ++.++++.||.+|+.++..+.+..+.. .+...++..+..++.-
T Consensus 513 ~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~ 592 (980)
T 3ibv_A 513 LLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVS 592 (980)
T ss_dssp HHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCC
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCC
Confidence 99999999999887643 467778888888 888899999999999999999877643 1223344444444331
Q ss_pred C----C--------------ccHHhHHHHHHHHHHHHhc
Q 016814 360 P----D--------------VDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 360 ~----~--------------~~vr~~a~~al~~~~~~~~ 380 (382)
+ + .+=+....+|++.+....+
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 593 PVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp CCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred CCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 1 0 1135678888888887755
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.33 E-value=2.9e-10 Score=98.95 Aligned_cols=253 Identities=12% Similarity=0.050 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHHHHhh--CHHHHHHhhhHhhhhhcC-----------CCchHHHHHHHHHHHhhccccC-h-HhH--H
Q 016814 89 AEVRIAAAGKVTKFCRIL--NPELAIQHILPCVKELSS-----------DSSQHVRSALASVIMGMAPLLG-K-DAT--I 151 (382)
Q Consensus 89 ~~VR~~a~~~l~~l~~~~--~~~~~~~~il~~l~~~~~-----------d~~~~vr~~a~~~l~~l~~~~~-~-~~~--~ 151 (382)
.+....|+.+|++++..- .........+|.+..++. ..++.++..++.+|..++..-+ . ... .
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 344556777888775431 111223356666666663 1357899999999999985432 1 112 2
Q ss_pred HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhhH-hhhHHHHHHHH-hcCCCchHHHHHHHHhHHHHhhhc--
Q 016814 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLG-- 224 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~---~~~~-~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~-- 224 (382)
...+|.+.+++.+++++++..++.+|..+...-+ .+.+ ....+|.+.++ ..+.+..++..++..+..++....
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 4568999999999999999999999998865311 1222 23468888886 566788999999999998876321
Q ss_pred -hhhh-HHHHHHHHHHHhccchh----HHHHHHHHHHHHHHHHh--ChHH----HHhhhHHHHHhhhcCcchHHHHHHHH
Q 016814 225 -VGFF-DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEF--GPEW----AMQHITPQVLEMINNPHYLYRMTILR 292 (382)
Q Consensus 225 -~~~~-~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~~--~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~ 292 (382)
.... ....+|.+..++.+++. ++++.|+.++..++... +.+. .....+|.+.+++.+++..++..|+.
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 2222 24578899999986544 69999999999888631 2221 22357899999999999999999999
Q ss_pred HHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814 293 AISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 293 ~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 341 (382)
++..++...... ....-.+|.|..++.++++.+|..|+.+|..+...-+
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999997432211 2234578999999999999999999999999987533
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.33 E-value=1.9e-09 Score=80.76 Aligned_cols=216 Identities=16% Similarity=0.150 Sum_probs=160.1
Q ss_pred HhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhh
Q 016814 113 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 192 (382)
Q Consensus 113 ~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ 192 (382)
..++..+..++.|.-|.|+..++..+..+++..+. ...+.+-..+.-+-+++.-......++++|.++.. .++.+ ..
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~v-~~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELV-KS 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHHH-HH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHHH-Hh
Confidence 45778888899999999999999999988875542 11111112222223567777878888999988764 44444 77
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhH
Q 016814 193 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 272 (382)
Q Consensus 193 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~ 272 (382)
++|.+..-..-.++++|......++.++...+ +. ...+..-+..++.+++..-|..|+..++.+..+ +. .+..-++
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaranP-~l-~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~-~yv~PfL 183 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKANP-ML-MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF-KYVNPFL 183 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-HH-HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-TH-HHHGGGH
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhCh-HH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Cc-cccCcch
Confidence 88888877666788999999999999886433 22 234566677888999988899988887776542 22 2456689
Q ss_pred HHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 273 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 273 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
|.++.++.|.+.-+|.++.+++..++..-+. ...++..-+.-++|++..|....-++|+.+.-
T Consensus 184 prL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 184 PRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999864332 44556666778899999999888888888753
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.33 E-value=3.7e-11 Score=103.36 Aligned_cols=303 Identities=11% Similarity=0.083 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHhCCccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCch
Q 016814 52 VRYMVANQLYELCEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 128 (382)
Q Consensus 52 vR~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~ 128 (382)
.|....+.+.-+.. |+... ...+.+.+.+++.+++...|+.+.-.+..+++. .++ .. -+...+.+-++|+++
T Consensus 44 c~~~l~kll~l~~~--G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~ 118 (355)
T 3tjz_B 44 CAHILTKILYLINQ--GEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKED 118 (355)
T ss_dssp HHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHC--CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcH
Confidence 34455565554443 33221 134677778899999999999999999888776 333 22 456677788899999
Q ss_pred HHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchH
Q 016814 129 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 208 (382)
Q Consensus 129 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~v 208 (382)
.+|..|+++++.+.. ....+.+.+.+.+.+.|.++.||+.|+-+...+.... ++.. +.+++.+.+++.|+++.|
T Consensus 119 ~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v-~~~~~~l~~ll~d~n~~V 192 (355)
T 3tjz_B 119 SYRGPAVRALCQITD----STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDVV-KRWVNEAQEAASSDNIMV 192 (355)
T ss_dssp HHHHHHHHHHHHHCC----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHHH-HTTHHHHHHHTTCSSHHH
T ss_pred hHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHhcCCCccH
Confidence 999999999999974 3346788999999999999999999999988887653 3444 678899999999999999
Q ss_pred HHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHH
Q 016814 209 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRM 288 (382)
Q Consensus 209 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 288 (382)
...++..+..+... +.. ...++++.+... .-.++...-..++.+..+...- .+.....+++.+...+++.+..|..
T Consensus 193 ~~~Al~lL~ei~~~-d~~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvy 268 (355)
T 3tjz_B 193 QYHALGLLYHVRKN-DRL-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVY 268 (355)
T ss_dssp HHHHHHHHHHHHTT-CHH-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHH
T ss_pred HHHHHHHHHHHHhh-chH-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHH
Confidence 98888888877653 211 122344433221 0112333333334333333211 0123456888888999999999999
Q ss_pred HHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHH
Q 016814 289 TILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFA 368 (382)
Q Consensus 289 ~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a 368 (382)
.|+.++..+.. .+.. ......+.+..++.++.+++|..+++.|..+...... .....-..+..+++|++..++..|
T Consensus 269 Ea~k~I~~l~~-~~~~-~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 269 EAASAIVNLPG-CSAK-ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp HHHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------
T ss_pred HHHHHHHhccC-CCHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHH
Confidence 99999988754 2222 2333445566678788899999999999999875432 334566777889999999998888
Q ss_pred HHHHH
Q 016814 369 TQAIQ 373 (382)
Q Consensus 369 ~~al~ 373 (382)
..++=
T Consensus 345 ittll 349 (355)
T 3tjz_B 345 ITTLL 349 (355)
T ss_dssp -----
T ss_pred HHHhh
Confidence 77654
No 84
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.32 E-value=3.5e-09 Score=104.70 Aligned_cols=359 Identities=11% Similarity=0.093 Sum_probs=220.5
Q ss_pred HHHHHHHhccChhhhhhhhhhhhhhhcc--CCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcC-----CCc
Q 016814 19 EGCAALGKLLEPQDCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLR-----DNE 88 (382)
Q Consensus 19 ~~l~~l~~~~~~~~~~~~ll~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~-----d~~ 88 (382)
+++..+... .+++..+.+++.+.+.+. +.+|..|++++-++|.++..+.++ .....++|.+.+++. |+.
T Consensus 435 d~L~~l~~l-~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k 513 (1023)
T 4hat_C 435 EVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK 513 (1023)
T ss_dssp HHHHHHHHH-CHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch
Confidence 555555443 344667778888777665 368999999999999999866643 233467888888776 456
Q ss_pred HHHHHHHHHHHHHHHHhhCH-HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh----------HHHhhHHH
Q 016814 89 AEVRIAAAGKVTKFCRILNP-ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----------TIEQLLPI 157 (382)
Q Consensus 89 ~~VR~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~l~~~ 157 (382)
..||..++..+|++.+.+.. ..+...++..+.+.+.|+++.|...|+.++..+++..+... +.+.++..
T Consensus 514 ~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~ 593 (1023)
T 4hat_C 514 AVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD 593 (1023)
T ss_dssp HHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence 77899999999999887632 23456777888888889999999999999999998766433 34555566
Q ss_pred HHHhhcCCChHHHHHHHHhhHHhhhhhchhh----HhhhHHHHHHH----Hh----cCCC-c------hHHHHHHHHhHH
Q 016814 158 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVE----LA----EDRH-W------RVRLAIIEYIPL 218 (382)
Q Consensus 158 l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~----~~~~llp~l~~----~~----~d~~-~------~vr~~~~~~l~~ 218 (382)
+.+...+-.+.-+..+..+++.+.+..+.+. +.+.+++.+.. +. .+++ | +.-..+++++..
T Consensus 594 l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~ 673 (1023)
T 4hat_C 594 IQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVA 673 (1023)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHH
Confidence 6666666677888899999999998887543 22333333322 22 1221 1 222345666777
Q ss_pred HHhhhchhhhH--HHHHHHHHHHhc-----------------cchh------HHHHHHHHHHHHHHHHhCh-HHHHhhhH
Q 016814 219 LASQLGVGFFD--DKLGALCMQWLQ-----------------DKVY------SIRDAAANNLKRLAEEFGP-EWAMQHIT 272 (382)
Q Consensus 219 l~~~~~~~~~~--~~l~~~l~~~l~-----------------d~~~------~vr~~a~~~l~~~~~~~~~-~~~~~~l~ 272 (382)
++..+|..+.. ..+.+.+.+..+ ...+ .||+..++.+..++..... +.....++
T Consensus 674 v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~ 753 (1023)
T 4hat_C 674 VCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLV 753 (1023)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhH
Confidence 77777765432 122222222110 0111 3455556666666655432 33344455
Q ss_pred HHHHhh----hcCcchHHHHH-HHHHHHHhccccChh------hhhhhhHHHHHhhccC---CCccHHHHHHHHHHHHhh
Q 016814 273 PQVLEM----INNPHYLYRMT-ILRAISLLAPVMGSE------ITCSRLLPVVINASKD---RVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 273 ~~l~~~----l~~~~~~~r~~-a~~~l~~l~~~~~~~------~~~~~~l~~l~~~l~d---~~~~vR~~a~~~l~~i~~ 338 (382)
|.+.+. +.+..+..|+. .+.+...+...+|.. ...+.++...+.++++ ..|+.|..-.+.+..+..
T Consensus 754 ~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~ 833 (1023)
T 4hat_C 754 EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINE 833 (1023)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 544332 22222333332 334444444444432 2334444444555554 578899999999988876
Q ss_pred hhhHH------HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 339 IVDQS------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 339 ~~~~~------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
+.-.. .....++..+.-..+.++.++-..+.+.+..+...
T Consensus 834 ~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~ 879 (1023)
T 4hat_C 834 KSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKN 879 (1023)
T ss_dssp HCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 64332 22345666666667778888877777777665543
No 85
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.30 E-value=2.6e-11 Score=106.67 Aligned_cols=254 Identities=13% Similarity=0.105 Sum_probs=165.6
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhH
Q 016814 76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 155 (382)
Q Consensus 76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 155 (382)
+...+..-+-|+.|++|..|+-+|..+.+..+...-. . -..+.+-.+|-.++-++..++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR--~------~~~N~DLAvRLLCVLALDRFGD------------ 234 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDI--Q------IRVDSKLFSKIYEILVTDKFND------------ 234 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----C--C------CCCCTTHHHHHHHHHHHBCCBB------------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCce--e------ccccHHHHHHHHHHHHhccccc------------
Confidence 6667777778889999999999999998877653111 1 1112233344444444333332
Q ss_pred HHHHHhhcCC-ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHH
Q 016814 156 PIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 234 (382)
Q Consensus 156 ~~l~~~l~d~-~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 234 (382)
.++|. ...||+.+++.++.+ ..++.+ ..++-.+...+..+.|.+|..++-.+..+...+.. .+.+++
T Consensus 235 -----YVSDqVVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~ 302 (800)
T 3oc3_A 235 -----FVDDRTVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCR 302 (800)
T ss_dssp -----CSSSSCBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHH
T ss_pred -----cccCeeeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHH
Confidence 33443 478999999999999 777765 23444444455888999999999999888333332 578899
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccChhhhhhhhHH
Q 016814 235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEITCSRLLP 312 (382)
Q Consensus 235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~~~~~~l~ 312 (382)
.+...|.|.+..||..|+.++..++ .++. ...++..+.+.+.+-+ ..---.....++.+...-......+.++|
T Consensus 303 aVL~GL~D~DDDVRAVAAetLiPIA---~p~~-l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVP 378 (800)
T 3oc3_A 303 KLVSLLSSPDEDIKLLSAELLCHFP---ITDS-LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLK 378 (800)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHTTSC---CSST-HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGG
T ss_pred HHHhhcCCcccHHHHHHHHHhhhhc---chhh-HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHH
Confidence 9999999999999999999999888 2221 2335555555544321 11112233444444322111112248999
Q ss_pred HHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH-hcCCCCccHHhHHHHHHH
Q 016814 313 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQAIQ 373 (382)
Q Consensus 313 ~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~al~ 373 (382)
.+..++.++.+.||.++++++..+. ...+++.+-+ ++-+++.+|+..+.++..
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999999998876 1233333333 566888899888777653
No 86
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.29 E-value=1.1e-08 Score=101.17 Aligned_cols=365 Identities=12% Similarity=0.055 Sum_probs=226.1
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---ccc--------------
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPT-------------- 72 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~-------------- 72 (382)
++.+|...+.++..++...-+ ..|+.+++-+.+.++. ++......+..+..+.+.+.. +..
T Consensus 113 ~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~ 190 (1023)
T 4hat_C 113 QKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK 190 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 366777888888888886544 3488888888888764 345677778888887776432 110
Q ss_pred -ccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHH-HHhhhHhhh-hhcCCCchHHHHHHHHHHHhhcc-cc-C
Q 016814 73 -RMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELA-IQHILPCVK-ELSSDSSQHVRSALASVIMGMAP-LL-G 146 (382)
Q Consensus 73 -~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~-~~~il~~l~-~~~~d~~~~vr~~a~~~l~~l~~-~~-~ 146 (382)
.+.+++.+.+.+.+ .++.+...++++++.+...++.+.+ .+.+++.+. .++. ++..|..++.++..+.. .. +
T Consensus 191 ~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~ 268 (1023)
T 4hat_C 191 EFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQ 268 (1023)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCS
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCC
Confidence 11245555555543 4577889999999999988776633 345777777 6664 46799999999999875 22 2
Q ss_pred hH-hHHH-------hhHHHH-HHh-------------hcCCChHHHHHHHHhhHHhhhhhch-----hhH---hhhHHHH
Q 016814 147 KD-ATIE-------QLLPIF-LSL-------------LKDEFPDVRLNIISKLDQVNQVIGI-----DLL---SQSLLPA 196 (382)
Q Consensus 147 ~~-~~~~-------~l~~~l-~~~-------------l~d~~~~vr~~~~~~l~~~~~~~~~-----~~~---~~~llp~ 196 (382)
+. ...+ .+++.+ ..+ ..+++.+.....+..+..+++.... +.+ ....+..
T Consensus 269 ~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~ 348 (1023)
T 4hat_C 269 DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQY 348 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 21 1111 222222 111 1223455555555555554443221 111 1222335
Q ss_pred HHHHhcCCCchHHHHHHHHhHHHHhhhc-----hhhh---HHHHHHHHHHHhccch---------------------hHH
Q 016814 197 IVELAEDRHWRVRLAIIEYIPLLASQLG-----VGFF---DDKLGALCMQWLQDKV---------------------YSI 247 (382)
Q Consensus 197 l~~~~~d~~~~vr~~~~~~l~~l~~~~~-----~~~~---~~~l~~~l~~~l~d~~---------------------~~v 247 (382)
+..+...+++.+-..+++.-..+.+.+- ...+ ...+.+.+..-+.-|. ...
T Consensus 349 Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~ 428 (1023)
T 4hat_C 349 LIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ 428 (1023)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHH
T ss_pred HHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHH
Confidence 5555566777775666666555554321 1122 2345555554433211 111
Q ss_pred HHHHH-HHHHHHHHHhChHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhcc--
Q 016814 248 RDAAA-NNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASK-- 319 (382)
Q Consensus 248 r~~a~-~~l~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~-- 319 (382)
.-... ..+..+.. +..+.....+++.+.+.+.+ .+|+.|++++.+++.++..+..+ .+...++|.++.++.
T Consensus 429 ~f~~~Rd~L~~l~~-l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~ 507 (1023)
T 4hat_C 429 LYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKK 507 (1023)
T ss_dssp HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcc
Confidence 11111 34433333 34445556677777666654 57999999999999999887753 567888998888876
Q ss_pred ---CCCccHHHHHHHHHHHHhhhhhH-HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHh
Q 016814 320 ---DRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379 (382)
Q Consensus 320 ---d~~~~vR~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 379 (382)
|+...||..++.++|.....+.. ..+...++..+.+.+.|+++.|...|+.|+..++.--
T Consensus 508 ~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp CSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 45566889999999998877652 2345556666666677888999999999999988753
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.28 E-value=9.9e-10 Score=90.07 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=136.6
Q ss_pred HhhcCCChHHHHHHHHhhHHhhhhhchhhHhhh---HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---h--h-HH
Q 016814 160 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---F--F-DD 230 (382)
Q Consensus 160 ~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~---llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~--~-~~ 230 (382)
..+-+.+...|..++..+....+... +..... +++-+.--+.|.|..+-..+++.+..+...++.. . . ..
T Consensus 53 ~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 53 SQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 33444567777777777666544322 222121 2333332334889999999999999887766432 1 1 25
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhh
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL 310 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 310 (382)
.++|.+..-+.|+...||+.+-..+..+...+++ ..+++.+.+.++++||++|+.++..+..+.+.+|.. ....
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~ 205 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKS 205 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--cccc
Confidence 7899999999999999999999999888887765 347788888999999999999999999999999976 2457
Q ss_pred H---HHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH
Q 016814 311 L---PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM 344 (382)
Q Consensus 311 l---~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~ 344 (382)
+ |.+.+++.|++..||.+|+.++..++...|...
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 7 999999999999999999999999999988763
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.27 E-value=1e-10 Score=100.56 Aligned_cols=285 Identities=12% Similarity=0.041 Sum_probs=162.6
Q ss_pred hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 016814 35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 114 (382)
Q Consensus 35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ 114 (382)
..+.+-+.++.+.+|...|+.+.-.+..+++. .++.. -+...+.+-++|+++.+|-.|+.+++.+... ...+.
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----~m~~~ 139 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDS----TMLQA 139 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----TTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----HHHHH
Confidence 34666677899999999999999999888765 33322 5788889999999999999999999987542 23457
Q ss_pred hhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHH
Q 016814 115 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 194 (382)
Q Consensus 115 il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ll 194 (382)
+.+.+.+.+.|.++.||..|+-+...+....+ + ..+.+++.+.+++.|.++.|...++..+..+... +...+ ..++
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~-~kLv 215 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-D-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAV-SKMI 215 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-H-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHH-HHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-H-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHH-HHHH
Confidence 78999999999999999999999998886543 3 3457889999999999999998888888777643 22122 3444
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHH
Q 016814 195 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274 (382)
Q Consensus 195 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 274 (382)
+.+... .-.++-....+++.+..+...- .......+++.+...+++.+..|...|++++-.+.. .+.. ......+.
T Consensus 216 ~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-~~~~a~~~ 291 (355)
T 3tjz_B 216 SKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-ELAPAVSV 291 (355)
T ss_dssp HHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCT
T ss_pred HHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-HHHHHHHH
Confidence 444321 1112322333444443333211 012345788889999999999999999999888654 2222 22334556
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 336 (382)
Q Consensus 275 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i 336 (382)
+..++.+++..+|-.|+..+..+....+. .....-..+..+++|++..++.-|+.+|-+.
T Consensus 292 L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 292 LQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp HHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence 66677788889999999999998875543 3445556778899999999999998887654
No 89
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.27 E-value=1.2e-09 Score=92.40 Aligned_cols=171 Identities=14% Similarity=0.119 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHhCC--cccccchHHHHHH-hcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcC
Q 016814 51 RVRYMVANQLYELCEAVGP--EPTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSS 124 (382)
Q Consensus 51 ~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~-~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~ 124 (382)
.-|..++..|..+++.... .......+|.++. ++.++++.||..|+++|++++..-+ ...+....+|.|..+++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 4677777777777754332 1222357899999 9999999999999999999976422 22334468899999887
Q ss_pred -CCchHHHHHHHHHHHhhccccCh--HhH-HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh----hHhhhHHHH
Q 016814 125 -DSSQHVRSALASVIMGMAPLLGK--DAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPA 196 (382)
Q Consensus 125 -d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~----~~~~~llp~ 196 (382)
+++..+|..++++|+.++...+. +.+ ....+|.+..++++.++.++..++.++..++.. +.+ .....++|.
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHH
Confidence 56889999999999999864432 222 246889999999999999999999999998765 222 123468899
Q ss_pred HHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814 197 IVELAEDRHWRVRLAIIEYIPLLASQ 222 (382)
Q Consensus 197 l~~~~~d~~~~vr~~~~~~l~~l~~~ 222 (382)
+..++.+++..+|..++..+..++..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999865
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.2e-10 Score=97.05 Aligned_cols=185 Identities=11% Similarity=0.066 Sum_probs=134.0
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH-------HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH-
Q 016814 77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD- 148 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~-------~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~- 148 (382)
+| +.+.+.+.+|..|..|++.+..+......+.. ...+.+.+...+.|.+..|...++.++..++...+..
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 55 55777888899999988888887765433211 1234566777888999999999999998887765532
Q ss_pred -------hHHHhhHHHHHH-hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814 149 -------ATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 220 (382)
Q Consensus 149 -------~~~~~l~~~l~~-~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~ 220 (382)
.....++|.+.+ .+.|..+.+|..+..++..++...+.. ..+++.+...+++++|++|..++..+..+.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 123456666654 578888999999888887776554321 345667777889999999999999999999
Q ss_pred hhhchhhh-----HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH
Q 016814 221 SQLGVGFF-----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 265 (382)
Q Consensus 221 ~~~~~~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 265 (382)
..+|.... .+.+++.+..++.|.+..||.+|...++.+...+|..
T Consensus 168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 88875432 3456677788899999999999999999998888753
No 91
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.22 E-value=4.4e-09 Score=82.36 Aligned_cols=221 Identities=13% Similarity=0.115 Sum_probs=168.1
Q ss_pred HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc----hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--h
Q 016814 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V 225 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~----~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~ 225 (382)
+..+..+.+++.|.++.++.+++..+..+.+..+ ...+ +.++|.+..++++++.++-..+++++..+....+ +
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 3466778888899999999999999998887642 2233 7888999999999999999999999999988764 3
Q ss_pred hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh
Q 016814 226 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 305 (382)
Q Consensus 226 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~ 305 (382)
+.| ..+...+....++++.-.+..++..++.+ +.. .....+...+.+++.+++.+++.+++.++..++...+...
T Consensus 111 ~~y-~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~---~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 111 KTF-LKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL---EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHH-HHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS---CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHH-HHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc---cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 433 36788888888999999999999999887 222 1234577788888888899999999999999887766555
Q ss_pred hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhc-CCCCccHHhHHHHHHHHHHHH
Q 016814 306 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELT-EDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~~~~ 378 (382)
..+.++..+-.+++++++.++..|+.++..+...--.+ .-...+.....++. -...+.+|..|-.....+-.+
T Consensus 186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~ 262 (265)
T 3b2a_A 186 HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV 262 (265)
T ss_dssp CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence 67777778888888889999999999999887642211 11245555666666 667788888887766655444
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.21 E-value=1.4e-09 Score=85.14 Aligned_cols=182 Identities=13% Similarity=0.046 Sum_probs=117.0
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-HhH
Q 016814 75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-DAT 150 (382)
Q Consensus 75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~ 150 (382)
..+..+.++++|.++.|+..++.+++.+.+..+.. ...+.++|.+.+++.+++..|--.|.++++.+....+. +..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 35777777888888888888888888888876443 34556777788788888888877888887777655542 223
Q ss_pred HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHH
Q 016814 151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD 230 (382)
Q Consensus 151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 230 (382)
...+...+...++++++-++..++..++.+ +. ......+...+..++.+++.+++..++..+-.++..-+.....+
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~ 188 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT 188 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence 456667777777777777777777777766 21 11124455556666666666777666666666655443222222
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLAE 260 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 260 (382)
.++.-+..+++.+++.+++.|+.++..+..
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 344444555666666666666666666554
No 93
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.20 E-value=2.1e-09 Score=90.97 Aligned_cols=145 Identities=10% Similarity=0.016 Sum_probs=62.0
Q ss_pred HHHHHH-HhcCCCchHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChH--H
Q 016814 194 LPAIVE-LAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE--W 266 (382)
Q Consensus 194 lp~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~--~ 266 (382)
+|.+.. ++.+++..+|..++.+++.++..-. ........+|.+..++.+ ++..+|..|+.+++.++....+. .
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 444444 4455555555555555555443211 111112344444444442 34445555555555444322210 1
Q ss_pred -HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814 267 -AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 267 -~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
.....+|.+..++.+++..+|..|+++++.++...... .....++|.+..++.++++.+|..++.+|+.+..
T Consensus 163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 11234444445554444555555555555544331110 1223344445555554444555555555554443
No 94
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.10 E-value=9.7e-12 Score=92.50 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhh
Q 016814 229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 308 (382)
Q Consensus 229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 308 (382)
.+.-.+.+...++|+++.+|..|+..++.+ |.. -++.+.+.+.|+++.+|..++.+++.+.. .
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~-----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~ 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRM----GDE-----AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------E 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSC----SST-----THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHh----Cch-----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence 345566777788888888888888887654 222 14777888888888899888888877652 2
Q ss_pred hhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814 309 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS 374 (382)
Q Consensus 309 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 374 (382)
..+|.+...++|+++.||..++.+|+.+.. ...+|.|.++++|+++.||..|..+++.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 456777788888888899999998888752 3456777787888888899888888764
No 95
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=99.09 E-value=1.2e-09 Score=86.58 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=89.2
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH-hcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 016814 34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRILNPELAI 112 (382)
Q Consensus 34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~ 112 (382)
.+.++++...+.+++...||..++..|+.. . ....+++.+.. +..|++|.||+.+..+++.++...+++
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 345666666777777777777777766655 1 11446777766 666777777777777777776644443
Q ss_pred HhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 113 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 113 ~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
..++.+...++|++..||..++.....++.........+.++|++..+..|++..||+++..+|..+.+.
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 3456667777777777777777765544433222223356677777777777777777777777776654
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.07 E-value=3.1e-11 Score=89.77 Aligned_cols=84 Identities=24% Similarity=0.268 Sum_probs=35.2
Q ss_pred HhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHH
Q 016814 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 196 (382)
Q Consensus 117 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~ 196 (382)
+.+.++++|+++.||..++.+++.+.. +..++.+.+.++|+++.||..++.+++.+.. ...+|.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~ 108 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAA 108 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHH
Confidence 334444444444444444444444431 1223333344444444444444444444321 223344
Q ss_pred HHHHhcCCCchHHHHHHHHh
Q 016814 197 IVELAEDRHWRVRLAIIEYI 216 (382)
Q Consensus 197 l~~~~~d~~~~vr~~~~~~l 216 (382)
+..+++|+++.||..+...|
T Consensus 109 L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 109 MEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHhCCCHHHHHHHHHHH
Confidence 44444444444444444443
No 97
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=99.03 E-value=8e-10 Score=87.48 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=108.1
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhh-hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 80 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l 80 (382)
++.|.+|+..+||..|+..++.. . . ...+++.+.+ ...|++|.||+.++..++.++...+++. .++.+
T Consensus 76 a~~L~~~~~deVR~~Av~lLg~~-~---~---~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----~l~~~ 144 (240)
T 3l9t_A 76 AFLAYQSDVYQVRMYAVFLFGYL-S---K---DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----ALPII 144 (240)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHT-T---T---SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----THHHH
T ss_pred HHHHHhCcchHHHHHHHHHHHhc-c---C---cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----HHHHH
Confidence 56788999999999999988877 3 1 2568899887 7789999999999999999997555543 58888
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc
Q 016814 81 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 145 (382)
Q Consensus 81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 145 (382)
...+.|++..||..|++.....+.........+.++|.+..+..|++..||.+...+|..+.+.-
T Consensus 145 ~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 145 DEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp HHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 99999999999999998875544331111223468899999999999999999999999998743
No 98
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.01 E-value=2.5e-06 Score=84.36 Aligned_cols=365 Identities=13% Similarity=0.062 Sum_probs=214.1
Q ss_pred CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc-----------------
Q 016814 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----------------- 71 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----------------- 71 (382)
.++.++...+.++..+++..-++ .|+.+++-+.+..+. ++..+...+..|..+.+.+....
T Consensus 124 ~~~~vinKLa~~La~I~k~~~P~-~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~ 201 (1073)
T 3gjx_A 124 KEKVYIGKLNMILVQILKQEWPK-HWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMC 201 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhChh-hccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 35677888888899888864442 377788777777653 34667778888888887754310
Q ss_pred -cccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHH-HhhhHhh-hhhcCCCchHHHHHHHHHHHhhccc-cC
Q 016814 72 -TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAI-QHILPCV-KELSSDSSQHVRSALASVIMGMAPL-LG 146 (382)
Q Consensus 72 -~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~-~~il~~l-~~~~~d~~~~vr~~a~~~l~~l~~~-~~ 146 (382)
..+.+++.+.+.+. ..++.+...++++++.+...++.+.+. +.+++.+ ...+. ++..|..++.++..+... .+
T Consensus 202 ~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~ 279 (1073)
T 3gjx_A 202 NEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVS 279 (1073)
T ss_dssp HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSG
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhcccc
Confidence 01235555555553 356888899999999999988776443 4577766 46664 567999999999998753 22
Q ss_pred h-HhHH----HhhHHHHHHhh-------------cCCChHHHHHHHHhhHHhhhhhch-----hhHhhhH---HHHHHHH
Q 016814 147 K-DATI----EQLLPIFLSLL-------------KDEFPDVRLNIISKLDQVNQVIGI-----DLLSQSL---LPAIVEL 200 (382)
Q Consensus 147 ~-~~~~----~~l~~~l~~~l-------------~d~~~~vr~~~~~~l~~~~~~~~~-----~~~~~~l---lp~l~~~ 200 (382)
. +... +.++..+..++ .+++.+.-.+.+..+..+++.... ..+.+.+ +..+..+
T Consensus 280 ~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~ 359 (1073)
T 3gjx_A 280 QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLV 359 (1073)
T ss_dssp GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 1 1111 11121122222 112223333333333333332211 0111222 3334455
Q ss_pred hcCCCchHHHHHHHHhHHHHhhhch------------------------hhhH---HHHHHHHHHHhccc----------
Q 016814 201 AEDRHWRVRLAIIEYIPLLASQLGV------------------------GFFD---DKLGALCMQWLQDK---------- 243 (382)
Q Consensus 201 ~~d~~~~vr~~~~~~l~~l~~~~~~------------------------~~~~---~~l~~~l~~~l~d~---------- 243 (382)
...++..+-.-+...-..+...+-. ..+. ..+...+..-+.-|
T Consensus 360 s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ 439 (1073)
T 3gjx_A 360 SEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQ 439 (1073)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSS
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCccc
Confidence 5566666655555554444332210 0111 12233333222211
Q ss_pred -----------hh-HHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhccccChh---hh
Q 016814 244 -----------VY-SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---IT 306 (382)
Q Consensus 244 -----------~~-~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~---~~ 306 (382)
+. ..+...-.++.. ...++++.....+++.+.+.+.. .+|..+++++++++.++..+..+ .+
T Consensus 440 ge~~re~~~d~~~~~ly~~mrd~L~~-lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~ 518 (1073)
T 3gjx_A 440 GEVVREFMKDTDSINLYKNMRETLVY-LTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF 518 (1073)
T ss_dssp SCEEEEECSSCHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred chHHHHHHhhcchHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch
Confidence 10 122222233333 33456665556667776665543 46999999999999998776642 56
Q ss_pred hhhhHHHHHhhccCC-----CccHHHHHHHHHHHHhhhhhH-HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814 307 CSRLLPVVINASKDR-----VPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 307 ~~~~l~~l~~~l~d~-----~~~vR~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 378 (382)
...+++.++.+...+ .+.++...+..+|.....+.. ..+...++..+.+...|+++.|+..|+.|+..++.-
T Consensus 519 Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 519 LVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 778888888777544 234777777888877665542 235566666666777899999999999999988764
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.00 E-value=2e-08 Score=88.87 Aligned_cols=232 Identities=15% Similarity=0.106 Sum_probs=161.0
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChh-----hh-hhhhhhh--------hhhhccCCC-HHHHHHHHHHHHHHHHHhCCc
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQ-----DC-VAHILPV--------IVNFSQDKS-WRVRYMVANQLYELCEAVGPE 70 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~-----~~-~~~ll~~--------l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~~ 70 (382)
+-|+..++|+.|+-++..+.+..+.. .. .+....+ +-....|.- .-||+.+++.|+.+ ..++++
T Consensus 183 LFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e 261 (800)
T 3oc3_A 183 LLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP 261 (800)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS
T ss_pred hcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh
Confidence 34778999999999999999876531 00 0111111 112345543 57999999999999 777776
Q ss_pred ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhH
Q 016814 71 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 150 (382)
Q Consensus 71 ~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 150 (382)
..++..++..+..+.|+||..++-.+..+...+.. .+.+++.+...++|.+..||..|+.++..++ .+ ..
T Consensus 262 ---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p-~~ 331 (800)
T 3oc3_A 262 ---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---IT-DS 331 (800)
T ss_dssp ---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CS-ST
T ss_pred ---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---ch-hh
Confidence 35666666677888999999999999988443332 5678899999999999999999999999998 21 22
Q ss_pred HHhhHHHHHHhhcCC--ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh
Q 016814 151 IEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 228 (382)
Q Consensus 151 ~~~l~~~l~~~l~d~--~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 228 (382)
.+.++..+.+.+.+- -..........++.++..-......+.++|.+..++.+.-..||.++++.+..+.
T Consensus 332 l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------- 403 (800)
T 3oc3_A 332 LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-------- 403 (800)
T ss_dssp HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--------
T ss_pred HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--------
Confidence 455666666655442 2233334444445544432111111478888888899999999999999998776
Q ss_pred HHHHHHH-HHHHhccchhHHHHHHHHHHH
Q 016814 229 DDKLGAL-CMQWLQDKVYSIRDAAANNLK 256 (382)
Q Consensus 229 ~~~l~~~-l~~~l~d~~~~vr~~a~~~l~ 256 (382)
...++.. +++.+-+++.+|++.+.+.+.
T Consensus 404 ~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1233333 456778899999999999885
No 100
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.89 E-value=1.4e-06 Score=88.43 Aligned_cols=366 Identities=13% Similarity=0.037 Sum_probs=211.2
Q ss_pred CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc----------------
Q 016814 9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---------------- 72 (382)
Q Consensus 9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~---------------- 72 (382)
..+.||...+.++..+++.--+ ..|+.+++.+.+.++. ++..+..++..|..+++.......
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~ 185 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN 185 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Confidence 5689999999999999987544 4588999988888765 556788899999999875322100
Q ss_pred ccchHHHHHHhcCC-------------------CcHHHHHHHHHHHHHHHHhhCHHHHHH---hhhHhhhhhcCCCchHH
Q 016814 73 RMDLVPAYVRLLRD-------------------NEAEVRIAAAGKVTKFCRILNPELAIQ---HILPCVKELSSDSSQHV 130 (382)
Q Consensus 73 ~~~ll~~l~~~l~d-------------------~~~~VR~~a~~~l~~l~~~~~~~~~~~---~il~~l~~~~~d~~~~v 130 (382)
...+++.+.+.+.+ ++..++..+++++.++....+...+.+ .+++.+..++.+ +.+
T Consensus 186 ~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~l 263 (1204)
T 3a6p_A 186 MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QEL 263 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHH
Confidence 01344555544433 234578888888888777666654433 377777777764 678
Q ss_pred HHHHHHHHHhhccccC-hHh---HHHhh----HHHHHHhh--------cCCChHHHHHHHHhhHHhhhhhc---------
Q 016814 131 RSALASVIMGMAPLLG-KDA---TIEQL----LPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIG--------- 185 (382)
Q Consensus 131 r~~a~~~l~~l~~~~~-~~~---~~~~l----~~~l~~~l--------~d~~~~vr~~~~~~l~~~~~~~~--------- 185 (382)
|..|+.+|..++..-. .+. ....+ +..+.... .+++.++++..++.+..++..+-
T Consensus 264 r~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~ 343 (1204)
T 3a6p_A 264 QLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDV 343 (1204)
T ss_dssp HHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999986432 221 11111 11122222 22234555555555544432211
Q ss_pred --hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--h-h---hhHHHHHHHHHH---Hhc-------------
Q 016814 186 --IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V-G---FFDDKLGALCMQ---WLQ------------- 241 (382)
Q Consensus 186 --~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~-~---~~~~~l~~~l~~---~l~------------- 241 (382)
...+ ..+++.+..+..+++..+-..++.....+.+... . . .+...+++.+.. -+.
T Consensus 344 ~~~~~l-~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~ 422 (1204)
T 3a6p_A 344 ETPSNF-GKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYS 422 (1204)
T ss_dssp CCCTTH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHH
T ss_pred cChhHH-HHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhh
Confidence 1122 5788889888888877776666666665554431 1 1 123445555521 110
Q ss_pred ----cc-------hhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-------------------------CcchH
Q 016814 242 ----DK-------VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-------------------------NPHYL 285 (382)
Q Consensus 242 ----d~-------~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-------------------------~~~~~ 285 (382)
|. -++-|......+..++... ++.....+.+.+.+.+. ++.|.
T Consensus 423 ~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~-p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 501 (1204)
T 3a6p_A 423 RFDFDSDEDFNAFFNSSRAQQGEVMRLACRLD-PKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFV 501 (1204)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHH
Confidence 00 1234666666666665543 22222333344433222 23456
Q ss_pred HHHHHHHHHHHhccccC----hhhhhhhhHHHHHhhc---cCCCccHHHHHHHHHHHHhhhhhH-HHHHHhHHHHHHHhc
Q 016814 286 YRMTILRAISLLAPVMG----SEITCSRLLPVVINAS---KDRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELT 357 (382)
Q Consensus 286 ~r~~a~~~l~~l~~~~~----~~~~~~~~l~~l~~~l---~d~~~~vR~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~ 357 (382)
..++...++..+.+.+. .+.....++|.++..+ ...+|.+|...+..++.+...+.. +.+...++..+...+
T Consensus 502 ~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l 581 (1204)
T 3a6p_A 502 QWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSV 581 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhh
Confidence 66776666666554441 1111112445555542 345688999999999888776652 123344444444333
Q ss_pred CC------------CCccHHhHHHHHHHHHHHHhc
Q 016814 358 ED------------PDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 358 ~d------------~~~~vr~~a~~al~~~~~~~~ 380 (382)
.+ ...+||..|+.++..++...+
T Consensus 582 ~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~ 616 (1204)
T 3a6p_A 582 TFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP 616 (1204)
T ss_dssp HCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ccCCcccccccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 234799999999998887654
No 101
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.84 E-value=5.4e-06 Score=81.98 Aligned_cols=357 Identities=12% Similarity=0.113 Sum_probs=204.9
Q ss_pred HHHHHHHhccChhhhhhhhhhhhhhhcc--CCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCC-----c
Q 016814 19 EGCAALGKLLEPQDCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDN-----E 88 (382)
Q Consensus 19 ~~l~~l~~~~~~~~~~~~ll~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~d~-----~ 88 (382)
+++..+ .+++++.....+++.+.+... ..+|..+.+++-++|.++..+.++ .+...+++.+..+...+ .
T Consensus 461 d~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k 539 (1073)
T 3gjx_A 461 ETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNK 539 (1073)
T ss_dssp HHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHH
T ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchh
Confidence 344443 355566667777777776544 457999999999999998655532 23345667676666443 3
Q ss_pred HHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh----------HHHhhHHH
Q 016814 89 AEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----------TIEQLLPI 157 (382)
Q Consensus 89 ~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~l~~~ 157 (382)
..++...+..+|+..+.+... .+.+.++..+.+.+.|+++.|+.+|+.++..+++..+... +.+.++..
T Consensus 540 ~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~ 619 (1073)
T 3gjx_A 540 AIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNN 619 (1073)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTS
T ss_pred HHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHH
Confidence 446666667888887765322 3556677788888899999999999999999987665432 23444444
Q ss_pred HHHhhcCCChHHHHHHHHhhHHhhhhhchhhH----hhhHHHHHHHH----h----------cCCCc-hHHHHHHHHhHH
Q 016814 158 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVEL----A----------EDRHW-RVRLAIIEYIPL 218 (382)
Q Consensus 158 l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~----~~~llp~l~~~----~----------~d~~~-~vr~~~~~~l~~ 218 (382)
+.....+=.+.-......+++.+....+.+.. .+.++|...+- . .|+.+ +.-..++++...
T Consensus 620 ~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~ 699 (1073)
T 3gjx_A 620 INTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVR 699 (1073)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHH
Confidence 44555555677778888889988888775432 23333322221 1 12211 222345555566
Q ss_pred HHhhhchhhhHHHHHHHHHHH----------hc----------cchh------HHHHHHHHHHHHHHHHhC-hHHHHhhh
Q 016814 219 LASQLGVGFFDDKLGALCMQW----------LQ----------DKVY------SIRDAAANNLKRLAEEFG-PEWAMQHI 271 (382)
Q Consensus 219 l~~~~~~~~~~~~l~~~l~~~----------l~----------d~~~------~vr~~a~~~l~~~~~~~~-~~~~~~~l 271 (382)
++...|..+.. ++.+++..+ +. +..+ .+|+..++.+..++.... .+.....+
T Consensus 700 v~~~~g~~f~~-~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~ 778 (1073)
T 3gjx_A 700 ACKAVGHPFVI-QLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENF 778 (1073)
T ss_dssp HHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHT
T ss_pred HHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh
Confidence 67777764432 222222111 10 0111 245555566666554432 23344555
Q ss_pred HHHHHhhh----cC-----cchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhcc---CCCccHHHHHHHHHHHHh
Q 016814 272 TPQVLEMI----NN-----PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASK---DRVPNIKFNVAKVLQSLI 337 (382)
Q Consensus 272 ~~~l~~~l----~~-----~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~---d~~~~vR~~a~~~l~~i~ 337 (382)
+|.+++.. .+ +++.+-......+.++...+.+. ...+.++...+.+.+ +..|+.|..-.+.+..+.
T Consensus 779 i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~ 858 (1073)
T 3gjx_A 779 VPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVN 858 (1073)
T ss_dssp SHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHH
Confidence 55555432 22 22333333344444444433322 233444444455555 447889999999998887
Q ss_pred hhhhH------HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 338 PIVDQ------SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 338 ~~~~~------~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
.+.-. ......++..+....+.+..++-..+.+.+..+..
T Consensus 859 ~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~ 904 (1073)
T 3gjx_A 859 SHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQ 904 (1073)
T ss_dssp HHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Confidence 76322 12224566666666667777776666666655543
No 102
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.64 E-value=1.5e-05 Score=69.77 Aligned_cols=281 Identities=10% Similarity=0.075 Sum_probs=170.8
Q ss_pred chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 89 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~ 89 (382)
++..++.|++.|....++++. ..+.-+.....+++|.+..||..+++.|..+|+. .....+...+.++++.+++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence 578899999999999999864 3566788889999999999999999999999865 3346789999999998888
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh----HhHHHhhHHHHHHhhcCC
Q 016814 90 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDE 165 (382)
Q Consensus 90 ~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~ 165 (382)
.-+..+-++|..+.+.-+.. ....++..+.. .++.+|..+++.|..-...+++ ......+...+.+.+.|-
T Consensus 115 ~E~~~V~~sL~sllk~Dpk~-tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDAKG-TLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcChHH-HHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 88888888888877643333 22233333333 3578999999988755444443 234567778888888876
Q ss_pred ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc------CCCchHHHHHHHHhHHHH----hhhchhhhHHHHHHH
Q 016814 166 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLA----SQLGVGFFDDKLGAL 235 (382)
Q Consensus 166 ~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~----~~~~~~~~~~~l~~~ 235 (382)
...--..++..+..+- ..+...-.+.+++.+.+... -.+...-...+.++.... .......|...+...
T Consensus 190 T~~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k 268 (507)
T 3u0r_A 190 TGEEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ 268 (507)
T ss_dssp CHHHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence 5433333333332221 11111112566666665532 123333333444443333 333333333333333
Q ss_pred HHHHhccc-----hhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc----C---------------c--chHHHHH
Q 016814 236 CMQWLQDK-----VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN----N---------------P--HYLYRMT 289 (382)
Q Consensus 236 l~~~l~d~-----~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~----~---------------~--~~~~r~~ 289 (382)
+...+.+- ....+...++.++.++...|........++.+.+.|. - + ++..-++
T Consensus 269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vEC 348 (507)
T 3u0r_A 269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVEC 348 (507)
T ss_dssp TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHH
T ss_pred hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHH
Confidence 33333332 2237888899999999988832222334444433331 1 1 2345567
Q ss_pred HHHHHHHhccccC
Q 016814 290 ILRAISLLAPVMG 302 (382)
Q Consensus 290 a~~~l~~l~~~~~ 302 (382)
.+.++..++....
T Consensus 349 LLy~fH~L~~k~P 361 (507)
T 3u0r_A 349 LLYSFHQLGRKLP 361 (507)
T ss_dssp HHHHHHHHHTTCT
T ss_pred HHHHHHHHhhhCh
Confidence 7777777776544
No 103
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.58 E-value=2.2e-05 Score=72.02 Aligned_cols=293 Identities=15% Similarity=0.180 Sum_probs=178.5
Q ss_pred hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc-cC-CCHHHHHHHHHHHHHHHHHhCCc------------
Q 016814 5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QD-KSWRVRYMVANQLYELCEAVGPE------------ 70 (382)
Q Consensus 5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~d-~~~~vR~~a~~~l~~l~~~~~~~------------ 70 (382)
+.+..-..=|+.|+..+..+++.... .+-..-+|.+...+ +| .|.++=+.+.+.|..+...-+.+
T Consensus 30 l~~~tl~eDRR~Av~~Lk~~sk~y~~-~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~ 108 (651)
T 3grl_A 30 VASSTLLDDRRNAVRALKSLSKKYRL-EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSED 108 (651)
T ss_dssp HHHCCSHHHHHHHHHHHHHTTTTTTT-HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------C
T ss_pred HhhccchhHHHHHHHHHHHHHHHhHH-HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchH
Confidence 33444556799999999999886654 33334344444444 44 45566666777776554211110
Q ss_pred -------c--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHH--HhhhHhhhhhcCCCchHHHHHHHH
Q 016814 71 -------P--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAI--QHILPCVKELSSDSSQHVRSALAS 136 (382)
Q Consensus 71 -------~--~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~--~~il~~l~~~~~d~~~~vr~~a~~ 136 (382)
. ....-++.++.++++++..+|..+++.|..++..-+.. .+. ..-+|.+..+++|+...+|..++-
T Consensus 109 ~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 0 01246888999999999999999999999998766543 222 246789999999999999999999
Q ss_pred HHHhhccccChH---hHHHhhHHHHHHhhcCCCh----HHHHHHHHhhHHhhhhhc--hhhHh-hhHHHHHHHHhcC---
Q 016814 137 VIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVIG--IDLLS-QSLLPAIVELAED--- 203 (382)
Q Consensus 137 ~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~----~vr~~~~~~l~~~~~~~~--~~~~~-~~llp~l~~~~~d--- 203 (382)
.|..+++.-..- ...+..++.+.+++.++.. .|-..++..+..+.+.-. ...|. ...+|.+..+++.
T Consensus 189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~ 268 (651)
T 3grl_A 189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE 268 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence 999998744321 1235566777777766443 666677777777765532 11221 1234444444432
Q ss_pred -CCchHH--HH---HHHHhHHHHhhhch---------hhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHhCh--
Q 016814 204 -RHWRVR--LA---IIEYIPLLASQLGV---------GFFDDKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEFGP-- 264 (382)
Q Consensus 204 -~~~~vr--~~---~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~-- 264 (382)
..|.-+ .. ++..+..+...-++ ..+...+++.+.+++..+ ...+|..|+.+++.++.....
T Consensus 269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q 348 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQ 348 (651)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 245421 12 23333333322111 112223556666666544 578999999999998763321
Q ss_pred HHHH----------hhhHHHHHhhhcCcc-hHHHHHHHHHHHHhc
Q 016814 265 EWAM----------QHITPQVLEMINNPH-YLYRMTILRAISLLA 298 (382)
Q Consensus 265 ~~~~----------~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~ 298 (382)
+.+. ..++..++.++.+.+ ..+|.+++.++..+.
T Consensus 349 ~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 349 DYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 1121 123344455565544 789999999998875
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.54 E-value=4.3e-06 Score=82.08 Aligned_cols=335 Identities=12% Similarity=0.036 Sum_probs=195.5
Q ss_pred cchhccCCchHHHHHHHHHHHHHHhccCh------hhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC-----
Q 016814 2 IAWQQSNDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP----- 69 (382)
Q Consensus 2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~----- 69 (382)
++.|+.|++..-.+.|++.++.+...... +..|+.+.|++.+.+. +-+++....-..++.-+....++
T Consensus 513 ~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~ 592 (997)
T 1vsy_5 513 CESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKT 592 (997)
T ss_dssp HHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHH
Confidence 45678888888899999999999876432 4678889999999887 45555444444443333321110
Q ss_pred ---------------c------------------------ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---
Q 016814 70 ---------------E------------------------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--- 107 (382)
Q Consensus 70 ---------------~------------------------~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~--- 107 (382)
. .....++..+. ++++...||++....|..+....-
T Consensus 593 L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~ 670 (997)
T 1vsy_5 593 FFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPS 670 (997)
T ss_dssp HHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccC
Confidence 0 00011222222 466778999999999887765431
Q ss_pred ---H----------------------HHHHHhhh---HhhhhhcC---C--C-----ch--HHHHHHHHHHHhhccccCh
Q 016814 108 ---P----------------------ELAIQHIL---PCVKELSS---D--S-----SQ--HVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 108 ---~----------------------~~~~~~il---~~l~~~~~---d--~-----~~--~vr~~a~~~l~~l~~~~~~ 147 (382)
. +.+.+.+. ..+...-. + + +. ..-..++..+......-..
T Consensus 671 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~ 750 (997)
T 1vsy_5 671 ISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNK 750 (997)
T ss_dssp BSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGH
T ss_pred CCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCc
Confidence 0 11111111 11111111 1 1 11 1123344444433322111
Q ss_pred Hh---HHH-hhHHHHHHhhcCCCh-HHHHH-HHHhhHHhhhhhchhhHhhhHHHHHHHHhc-CCCchHHHHHHHHhHHHH
Q 016814 148 DA---TIE-QLLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLA 220 (382)
Q Consensus 148 ~~---~~~-~l~~~l~~~l~d~~~-~vr~~-~~~~l~~~~~~~~~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~ 220 (382)
.. ... .++|.+..+.++++. ++... +...+..+....-.....+.++..+.+..+ +++| +|..++..+..+.
T Consensus 751 ~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~ 829 (997)
T 1vsy_5 751 VLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFL 829 (997)
T ss_dssp HHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHH
Confidence 11 112 255656555555443 44444 333444443322222222555556655555 6899 9999999887664
Q ss_pred hh----hchhhhHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC------------cc
Q 016814 221 SQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN------------PH 283 (382)
Q Consensus 221 ~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~------------~~ 283 (382)
-. ++.+. ...+...+..+|.|+. .+||+.|+.+|+-++...+.......++..+.+.+.. ++
T Consensus 830 f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~ 908 (997)
T 1vsy_5 830 SAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKT 908 (997)
T ss_dssp HHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHH
T ss_pred HHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchH
Confidence 31 12222 2468888899999999 9999999999999997542422233455555555522 11
Q ss_pred hHHHHHHHHHHHHhccccChh----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814 284 YLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 284 ~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 341 (382)
...|.+|+..++.++..++-. ...+.++..|.....|+.+ ++.++-++++.+-....
T Consensus 909 ~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 909 DIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRA 969 (997)
T ss_dssp CHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccc
Confidence 268899999999998776643 3666777777777888544 99999999998876543
No 105
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.53 E-value=4.1e-05 Score=77.74 Aligned_cols=329 Identities=10% Similarity=-0.014 Sum_probs=181.7
Q ss_pred chHHHHHHHHHHHHHHhccChhhhh---hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC-cc---cccch----HH
Q 016814 10 QDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EP---TRMDL----VP 78 (382)
Q Consensus 10 ~~~vR~~a~~~l~~l~~~~~~~~~~---~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~---~~~~l----l~ 78 (382)
++.++..+++++.....-.+..... ..+++.+..++.+ +.+|..|+++|..++..-.. +. ....+ +.
T Consensus 220 ~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~ 297 (1204)
T 3a6p_A 220 NCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMH 297 (1204)
T ss_dssp HHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHH
Confidence 4456777777776555433332221 2377777777664 57899999999999863322 11 01111 11
Q ss_pred HHHHhc--------CCCcHHHHHHHHHHHHHHHHhhCH----------HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHh
Q 016814 79 AYVRLL--------RDNEAEVRIAAAGKVTKFCRILNP----------ELAIQHILPCVKELSSDSSQHVRSALASVIMG 140 (382)
Q Consensus 79 ~l~~~l--------~d~~~~VR~~a~~~l~~l~~~~~~----------~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~ 140 (382)
.+.+.. .|.+.++++..++.+..++..... ......+++.+..+..+++..|-..++.....
T Consensus 298 ~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ 377 (1204)
T 3a6p_A 298 YILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGA 377 (1204)
T ss_dssp HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHH
Confidence 223322 223456777777777776643221 11234678888888888888887777776665
Q ss_pred hcccc--Ch-H---hHHHhhHHHHHH---hh---cCCC---------------------hHHHHHHHHhhHHhhhhhchh
Q 016814 141 MAPLL--GK-D---ATIEQLLPIFLS---LL---KDEF---------------------PDVRLNIISKLDQVNQVIGID 187 (382)
Q Consensus 141 l~~~~--~~-~---~~~~~l~~~l~~---~l---~d~~---------------------~~vr~~~~~~l~~~~~~~~~~ 187 (382)
+.+.. +. + .....+++.+.. -+ .+.+ .+.|..+...+..++...+.+
T Consensus 378 ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~ 457 (1204)
T 3a6p_A 378 LFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT 457 (1204)
T ss_dssp HHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 54432 11 1 123455555522 11 1000 123554554554444443333
Q ss_pred hHhhhHHHHHHHHhcC-------------------------CCchHHHHHHHHhHHHHhhh---c-hhhhHHHHHHHHHH
Q 016814 188 LLSQSLLPAIVELAED-------------------------RHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQ 238 (382)
Q Consensus 188 ~~~~~llp~l~~~~~d-------------------------~~~~vr~~~~~~l~~l~~~~---~-~~~~~~~l~~~l~~ 238 (382)
.+ ..+.+.+...+.+ +.|....+....+..++..+ . .+.....+.+.++.
T Consensus 458 ~l-~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~ 536 (1204)
T 3a6p_A 458 SF-QMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ 536 (1204)
T ss_dssp HH-HHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 33 5555666444332 12333444444444444333 1 01111123333333
Q ss_pred Hh---ccchhHHHHHHHHHHHHHHHHhCh-HHHHhhhHHHHHhhhcC------------cchHHHHHHHHHHHHhccccC
Q 016814 239 WL---QDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINN------------PHYLYRMTILRAISLLAPVMG 302 (382)
Q Consensus 239 ~l---~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~------------~~~~~r~~a~~~l~~l~~~~~ 302 (382)
.+ ...++.+|..++.+++.+...+.. ..+...++..++..+.+ .+..+|..|+.++..++..++
T Consensus 537 ~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~ 616 (1204)
T 3a6p_A 537 MVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP 616 (1204)
T ss_dssp HHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 345778999999999998887653 23445566666666655 235799999999999998876
Q ss_pred hh--hhhhhhHHHHHhhccCCC---ccHHHHHHHHHHHHhhhhh
Q 016814 303 SE--ITCSRLLPVVINASKDRV---PNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 303 ~~--~~~~~~l~~l~~~l~d~~---~~vR~~a~~~l~~i~~~~~ 341 (382)
.. .+.+.+...+-..+.... ..-+..-.+++..++..++
T Consensus 617 ~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~ 660 (1204)
T 3a6p_A 617 QLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK 660 (1204)
T ss_dssp HHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCC
Confidence 54 456666666666554332 4456666677777755443
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.51 E-value=0.00013 Score=63.96 Aligned_cols=264 Identities=13% Similarity=0.066 Sum_probs=154.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHH
Q 016814 78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 157 (382)
Q Consensus 78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 157 (382)
..++...+- +...+.-|++.+..+.+.++.- .+..+..+..+++|.+..||..+++.|..+|.. .....+..+
T Consensus 32 ~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDv 104 (507)
T 3u0r_A 32 QVILDGVKG-GTKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADI 104 (507)
T ss_dssp HHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHH
Confidence 334444443 5788888888888888877543 235677888899999999999999999999875 346788888
Q ss_pred HHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh----HHHHH
Q 016814 158 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLG 233 (382)
Q Consensus 158 l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~ 233 (382)
+.+++..+++.-+..+-++|..+.+.-+.. .+-..+.++.+ .+..+|..++..|..-...++.+.+ ...+.
T Consensus 105 L~QlLqtdd~~E~~~V~~sL~sllk~Dpk~----tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 105 LTQLLQTDDSAEFNLVNNALLSIFKMDAKG----TLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcChHH----HHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 899998888887777777777776553332 22233333333 3467888888877665555554333 34566
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh------cCcchHHHHHHH----HHHHHhccccCh
Q 016814 234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI------NNPHYLYRMTIL----RAISLLAPVMGS 303 (382)
Q Consensus 234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l------~~~~~~~r~~a~----~~l~~l~~~~~~ 303 (382)
..+.+.+.|-...-=......+.. .+.++.-.-...+++.+.+.. .-.+...-...+ .++..+++....
T Consensus 180 ~~ikK~L~DVT~~EF~L~m~lL~~-lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~S 258 (507)
T 3u0r_A 180 TESKKVLEDVTGEEFVLFMKILSG-LKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHS 258 (507)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHT-SGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCC
T ss_pred HHHHHHhccccHHHHHHHHHHHHh-cccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCCh
Confidence 666677766443221111122211 111221112334555555542 112333333333 444444444444
Q ss_pred hhhhhhhHHHHHhhccCCCc-----cHHHHHHHHHHHHhhhhhHHHHHHhHHHHHH
Q 016814 304 EITCSRLLPVVINASKDRVP-----NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV 354 (382)
Q Consensus 304 ~~~~~~~l~~l~~~l~d~~~-----~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~ 354 (382)
..+...+...++..+++-.. ..+...+++++.+....+........++.+.
T Consensus 259 tkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy 314 (507)
T 3u0r_A 259 TRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLF 314 (507)
T ss_dssp HHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHH
Confidence 44555555555555554333 3899999999999998883222333334333
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.45 E-value=0.00012 Score=69.77 Aligned_cols=148 Identities=17% Similarity=0.150 Sum_probs=92.6
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc--ccccchH-HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-
Q 016814 34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLV-PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE- 109 (382)
Q Consensus 34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll-~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~- 109 (382)
.+.++|++.. ++++++..|..|+.+|+.++..-... .....++ +.+..++.|++..||.+|+.+|.+++...+.+
T Consensus 33 ~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 33 EDKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 4568898866 67889999999999999998521111 1123344 55677899999999999999999998877665
Q ss_pred ---HHHHhhhHhhhhhcCCC--------------c-------hHHHHHHHHHHHhhccccChH---hHHHhhHHHHHHhh
Q 016814 110 ---LAIQHILPCVKELSSDS--------------S-------QHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLL 162 (382)
Q Consensus 110 ---~~~~~il~~l~~~~~d~--------------~-------~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l 162 (382)
.+...+++.+..+++.. . +.+-..++.++..++..-+.. ......+|.+...+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 23345667666654210 0 122334455555555432221 11233445444444
Q ss_pred cC---CChHHHHHHHHhhHHhhh
Q 016814 163 KD---EFPDVRLNIISKLDQVNQ 182 (382)
Q Consensus 163 ~d---~~~~vr~~~~~~l~~~~~ 182 (382)
.+ ...+++..++.+|..+.+
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHT
T ss_pred HhcCCCcHHHHHHHHHHHHHHhc
Confidence 22 246788888888877654
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.35 E-value=2.7e-05 Score=63.01 Aligned_cols=148 Identities=13% Similarity=0.047 Sum_probs=101.7
Q ss_pred cchHHHHHHhcCCCcH--HHHHHHHHHHHHHHHhhCH---HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-
Q 016814 74 MDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK- 147 (382)
Q Consensus 74 ~~ll~~l~~~l~d~~~--~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 147 (382)
..-+|.+++++.++++ .++..++.++..++..-.+ .......+|.|.+++++.++.++..++.+|..++..-..
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3468999999988777 8888888888888754321 133346789999999999999999999999999753211
Q ss_pred -H-hHHHhhHHHHHHhhc-CCChHHHHHHHHhhHHhhhhhc-hhhHhhhHHHHHHHHhc----------------CCCch
Q 016814 148 -D-ATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAE----------------DRHWR 207 (382)
Q Consensus 148 -~-~~~~~l~~~l~~~l~-d~~~~vr~~~~~~l~~~~~~~~-~~~~~~~llp~l~~~~~----------------d~~~~ 207 (382)
. .....-+|.+.+++. ..++.+++.++.+|..+...-. ...+.+.-+|.+.+++. ..+..
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 1 122567888888987 4688999998877777754311 12222334565554321 01346
Q ss_pred HHHHHHHHhHHHHh
Q 016814 208 VRLAIIEYIPLLAS 221 (382)
Q Consensus 208 vr~~~~~~l~~l~~ 221 (382)
++..+..+|..++.
T Consensus 167 v~~na~~~L~nLss 180 (233)
T 3tt9_A 167 IFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 77788888777754
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.28 E-value=5.8e-05 Score=61.03 Aligned_cols=186 Identities=16% Similarity=0.075 Sum_probs=121.1
Q ss_pred hHHHHHHHHhcCCCc--hHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--
Q 016814 192 SLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-- 264 (382)
Q Consensus 192 ~llp~l~~~~~d~~~--~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-- 264 (382)
.-+|.+.+++.++++ .++..++..+..++..-.+ .......+|.+..+|.+++.++++.|+.+|..++..-..
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 346777888877777 7777787888777643221 222234678889999988899999999999998752111
Q ss_pred -HHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHHhhcc----------------CCCccH
Q 016814 265 -EWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVINASK----------------DRVPNI 325 (382)
Q Consensus 265 -~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l~----------------d~~~~v 325 (382)
.......+|.+..++. .+++.+++.++.++..++..-... .+...-+|.+...+. ..++.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 1123457888888887 467889999998888887543322 233445666665432 124579
Q ss_pred HHHHHHHHHHHhhhh-hHH-HHH--HhHHHHHHHhc------CCCCccHHhHHHHHHHHHHH
Q 016814 326 KFNVAKVLQSLIPIV-DQS-MVE--KTIRPCLVELT------EDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 326 R~~a~~~l~~i~~~~-~~~-~~~--~~i~~~l~~l~------~d~~~~vr~~a~~al~~~~~ 377 (382)
+..|..+|..+...- ..+ .+. ..+++.|..++ .+++...+..+.-++..+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 999999999987532 111 111 23455555543 33566778888888876643
No 110
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.12 E-value=0.0013 Score=60.42 Aligned_cols=283 Identities=12% Similarity=0.092 Sum_probs=159.6
Q ss_pred chHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcC-C-CchHHHHHHHHHHHhhccccChHhHH
Q 016814 75 DLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-D-SSQHVRSALASVIMGMAPLLGKDATI 151 (382)
Q Consensus 75 ~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~-d-~~~~vr~~a~~~l~~l~~~~~~~~~~ 151 (382)
+-++.+.+.+. ..-.+-|.+|+..|..+++....+.- ..-+|.+...++ | .+..+-..+.++|..+...-+.+..
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~- 98 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEV- 98 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccc-
Confidence 34555555444 34577899999999988876654433 334455555443 3 3444444455555443322111110
Q ss_pred HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH--
Q 016814 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-- 229 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-- 229 (382)
.. .-.....++ ..+....+.. .+.-++.+..++++++..+|..+++.|..++..-+.....
T Consensus 99 ~~-------~~~~~~~~~---~~~~~d~f~~-------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~I 161 (651)
T 3grl_A 99 EE-------NSTRQSEDL---GSQFTEIFIK-------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQII 161 (651)
T ss_dssp ----------------CH---HHHHHHHHHH-------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred cc-------cccccchHH---HHHHHHHHHc-------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 00 000000001 0111111111 1456788899999999999999999999998765543221
Q ss_pred ---HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh-HH--HHhhhHHHHHhhhcCcch----HHHHHHHHHHHHhcc
Q 016814 230 ---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EW--AMQHITPQVLEMINNPHY----LYRMTILRAISLLAP 299 (382)
Q Consensus 230 ---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~--~~~~l~~~l~~~l~~~~~----~~r~~a~~~l~~l~~ 299 (382)
+.-++.++.+|.|+...+|..++..+..+++.-.. +. ..+..++.++..+..... .+-+-++..+..+.+
T Consensus 162 l~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr 241 (651)
T 3grl_A 162 LVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK 241 (651)
T ss_dssp HHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT
T ss_pred HhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh
Confidence 24578889999999999999999999999874321 11 233466777777665443 566667777777776
Q ss_pred ccC--hhhhh-hhhHHHHHhhccCCCcc------HHHH---HHHHHHHHhhhhhH---------HHHHHhHHHHHHHhcC
Q 016814 300 VMG--SEITC-SRLLPVVINASKDRVPN------IKFN---VAKVLQSLIPIVDQ---------SMVEKTIRPCLVELTE 358 (382)
Q Consensus 300 ~~~--~~~~~-~~~l~~l~~~l~d~~~~------vR~~---a~~~l~~i~~~~~~---------~~~~~~i~~~l~~l~~ 358 (382)
.-. ...|. ...+|.+..+++.+... .-.. ++..+..+...-+. ......+++.+..++-
T Consensus 242 ~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 242 NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 532 22333 34566677776543221 2222 33344444332111 1234566777777654
Q ss_pred CC--CccHHhHHHHHHHHHH
Q 016814 359 DP--DVDVRFFATQAIQSID 376 (382)
Q Consensus 359 d~--~~~vr~~a~~al~~~~ 376 (382)
.+ ...+|..|..+++.+.
T Consensus 322 ~~~~p~~i~~~Al~tla~~i 341 (651)
T 3grl_A 322 ATGVPADILTETINTVSEVI 341 (651)
T ss_dssp CSSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 33 4568887777777654
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.84 E-value=0.023 Score=54.12 Aligned_cols=138 Identities=10% Similarity=-0.028 Sum_probs=87.1
Q ss_pred ccCCchHHHHHHHHHHHHHHhccChh---hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHH
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVP 78 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~ 78 (382)
++++++..|..|+.++..++..-... ...+.+.+++..++.|++..||.+++.+|.+|+...|.+. +...+++
T Consensus 43 L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~ 122 (684)
T 4gmo_A 43 LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLT 122 (684)
T ss_dssp HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHH
Confidence 56789999999999999998632221 1123355677888999999999999999999997766432 2344677
Q ss_pred HHHHhcCCCc---------------------HHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcC---CCchHHH
Q 016814 79 AYVRLLRDNE---------------------AEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSS---DSSQHVR 131 (382)
Q Consensus 79 ~l~~~l~d~~---------------------~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~---d~~~~vr 131 (382)
.+..++.... +.+-..++..|..+++.-..- ......+|.+...+. .....++
T Consensus 123 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~ 202 (684)
T 4gmo_A 123 AIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIY 202 (684)
T ss_dssp HHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHH
T ss_pred HHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHH
Confidence 6665552110 123334445555555432211 112234555555442 2345788
Q ss_pred HHHHHHHHhhcc
Q 016814 132 SALASVIMGMAP 143 (382)
Q Consensus 132 ~~a~~~l~~l~~ 143 (382)
..++.+|..+..
T Consensus 203 ~~a~~~L~~ls~ 214 (684)
T 4gmo_A 203 EEAISCLTTLSE 214 (684)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 888888888754
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.39 E-value=0.014 Score=58.37 Aligned_cols=132 Identities=11% Similarity=-0.018 Sum_probs=84.0
Q ss_pred hhHHHHHHHHhcC----CCchHHHHHHHHhHHHHhhhc------hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814 191 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260 (382)
Q Consensus 191 ~~llp~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 260 (382)
..++..+..++++ +++.+|..++-.++.++...- +....+.+...+.+.+...+.+-+..++++||.+..
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 3455555555544 456788888888888876442 112235566666677777777778888888888764
Q ss_pred HhChHHHHhhhHHHHHhhhcC-------cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc--cCCCccHHHHHHH
Q 016814 261 EFGPEWAMQHITPQVLEMINN-------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS--KDRVPNIKFNVAK 331 (382)
Q Consensus 261 ~~~~~~~~~~l~~~l~~~l~~-------~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l--~d~~~~vR~~a~~ 331 (382)
...++.+...+.. ...++|.+|+.++..+.... + ..+-+.+++.. ....+++|..|+.
T Consensus 470 --------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p----~~v~~il~~i~~n~~e~~EvRiaA~~ 536 (1056)
T 1lsh_A 470 --------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-P----RKVQEIVLPIFLNVAIKSELRIRSCI 536 (1056)
T ss_dssp --------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-H----HHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred --------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-h----HHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 1245556555531 23578899999998887432 2 23334444544 3445789999988
Q ss_pred HHHH
Q 016814 332 VLQS 335 (382)
Q Consensus 332 ~l~~ 335 (382)
.|-.
T Consensus 537 ~Lm~ 540 (1056)
T 1lsh_A 537 VFFE 540 (1056)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 113
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.25 E-value=0.0013 Score=64.72 Aligned_cols=176 Identities=13% Similarity=0.047 Sum_probs=116.2
Q ss_pred hccCCch-HHHHH-HHHHHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHH-h---CCcccccchH
Q 016814 5 QQSNDQD-SVRLL-AVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEA-V---GPEPTRMDLV 77 (382)
Q Consensus 5 l~~d~~~-~vR~~-a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~-~---~~~~~~~~ll 77 (382)
+.++++. +.... |..++..++...-+....+.++..+.+... +++| .|..++..+..+.-. + .++ ....+.
T Consensus 768 l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~ 845 (997)
T 1vsy_5 768 LVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKIL 845 (997)
T ss_dssp TSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTH
T ss_pred HhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHH
Confidence 3444443 45555 556666666554445555667777777666 7899 999998887655431 1 222 234689
Q ss_pred HHHHHhcCCCc-HHHHHHHHHHHHHHHHhh-CHHHHHHhhhHhhhhhcCC------------CchHHHHHHHHHHHhhcc
Q 016814 78 PAYVRLLRDNE-AEVRIAAAGKVTKFCRIL-NPELAIQHILPCVKELSSD------------SSQHVRSALASVIMGMAP 143 (382)
Q Consensus 78 ~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~-~~~~~~~~il~~l~~~~~d------------~~~~vr~~a~~~l~~l~~ 143 (382)
..+..++.|+. .+||+.|..+|..+..+. ...... .++..+.+.+.. ++...|.+++-.|+.+..
T Consensus 846 ~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~-~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~ 924 (997)
T 1vsy_5 846 EFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLL-SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIIS 924 (997)
T ss_dssp HHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHH-HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHH-HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999998776 433222 344445444411 112577888888888887
Q ss_pred ccChH----hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 016814 144 LLGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 184 (382)
Q Consensus 144 ~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~ 184 (382)
.++-+ .+.+.++..+....+|+.+ ++..+-++++.+-+..
T Consensus 925 a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 925 AFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVR 968 (997)
T ss_dssp TCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHT
T ss_pred hCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc
Confidence 77633 3556666677777777444 7777777777776543
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=97.25 E-value=0.084 Score=45.78 Aligned_cols=183 Identities=12% Similarity=0.126 Sum_probs=96.9
Q ss_pred HHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHH
Q 016814 169 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248 (382)
Q Consensus 169 vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 248 (382)
.+...+.....+.-.-.+. +.+.++|.+.++..|++..+|+.+++.+...+.. ..+ +...+++.+..++.|++..|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~e-l~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIE-LLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGG-GHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHcCCCHHHH
Confidence 3444444444432222222 2256666666666666666666666666665542 222 234566666666666666666
Q ss_pred HHHHHHHHHHHHHh-------Ch------H-H-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh----------
Q 016814 249 DAAANNLKRLAEEF-------GP------E-W-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---------- 303 (382)
Q Consensus 249 ~~a~~~l~~~~~~~-------~~------~-~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------- 303 (382)
+.++.+.+.+.... +. + | ....+-..++..+.+.+..+|..++.++..++-....
T Consensus 118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~ 197 (386)
T 3o2t_A 118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRR 197 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 66666655554211 00 0 1 1233445555666667788888888888876421110
Q ss_pred ----------------------hhhhhhhHHHHHhhccCCC--ccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHh
Q 016814 304 ----------------------EITCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356 (382)
Q Consensus 304 ----------------------~~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l 356 (382)
+..-..++..++..+.++. +..=.+++.+|+.++..= +.+...+++.+..+
T Consensus 198 ~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~R--P~~~~rIl~aL~~l 272 (386)
T 3o2t_A 198 QEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQR--PMFMSEVIQAYETL 272 (386)
T ss_dssp GTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHHH
T ss_pred cCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHhh
Confidence 0112456677777777532 223345555666555421 23456777777764
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.24 E-value=0.013 Score=58.70 Aligned_cols=170 Identities=13% Similarity=0.039 Sum_probs=103.8
Q ss_pred hhHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhch------hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814 153 QLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 222 (382)
Q Consensus 153 ~l~~~l~~~l~d----~~~~vr~~~~~~l~~~~~~~~~------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 222 (382)
..+..+..++++ .++.+|..++-+++.+....-. ....+.+...+.+.+...+...+..+++.|+.+..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 344455555544 4678999999999887654311 12235555556666666666677778888877653
Q ss_pred hchhhhHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc--CcchHHHHHHHHH
Q 016814 223 LGVGFFDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--NPHYLYRMTILRA 293 (382)
Q Consensus 223 ~~~~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~~a~~~ 293 (382)
+ ..++.+.+++. +...+||.+|+.++..+.... ++ .+-+.+...+. ..+..+|.+|+..
T Consensus 470 --p-----~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~----~v~~il~~i~~n~~e~~EvRiaA~~~ 537 (1056)
T 1lsh_A 470 --P-----NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR----KVQEIVLPIFLNVAIKSELRIRSCIV 537 (1056)
T ss_dssp --G-----GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH----HHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred --h-----hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hH----HHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 1 23334444442 234679999999999887532 22 24445555554 3458899999998
Q ss_pred HHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814 294 ISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 294 l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 341 (382)
+..-. +.......+.. ..-.|++.+|+......|..++..-.
T Consensus 538 Lm~t~---P~~~~l~~ia~---~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 538 FFESK---PSVALVSMVAV---RLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHTC---CCHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHC---cCHHHHHHHHH---HHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 85432 22222233322 23356788888888888888776543
No 116
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.21 E-value=0.053 Score=44.28 Aligned_cols=127 Identities=15% Similarity=0.239 Sum_probs=73.4
Q ss_pred HHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHH
Q 016814 169 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248 (382)
Q Consensus 169 vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 248 (382)
.+...+.....+.-.-.+. +.+.+++.+.++..|++..+|+.+++.+...+.. ...+....++.+..+++|+++.|.
T Consensus 31 ~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~ 107 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4444444444433222232 2355666666666666666777777766665532 223345566666666666666666
Q ss_pred HHHHHHHHHHHHHh-------Ch-----H--H-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc
Q 016814 249 DAAANNLKRLAEEF-------GP-----E--W-AMQHITPQVLEMINNPHYLYRMTILRAISLLA 298 (382)
Q Consensus 249 ~~a~~~l~~~~~~~-------~~-----~--~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 298 (382)
+.++.+.+.+.... +. + | ....+-..+...+.+.+..+|..++.++..+.
T Consensus 108 K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 108 KRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 66666665554321 11 0 0 12345556666777778999999999999875
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.08 E-value=0.077 Score=43.31 Aligned_cols=160 Identities=7% Similarity=0.055 Sum_probs=75.0
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhh
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQH 270 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 270 (382)
+.++..+.+.-...+ ..|...+.....++-.-.+. +.+++++.+..+..|++.++|.-.+..+...+.. ...+...
T Consensus 15 ~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~ 90 (257)
T 3gs3_A 15 AKVVDWCNELVIASP-STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPH 90 (257)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 334444444433333 45555555555544333333 3445555555555555555555555555555432 1223344
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc-cCCC-ccHHHHHHHHHHHHhhhhhHHHHHHh
Q 016814 271 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS-KDRV-PNIKFNVAKVLQSLIPIVDQSMVEKT 348 (382)
Q Consensus 271 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l-~d~~-~~vR~~a~~~l~~i~~~~~~~~~~~~ 348 (382)
+++.+..++.|++..+...++.+...+. |.+++.. .+++ ..--..+...+ ..
T Consensus 91 ~l~~L~~Ll~d~d~~V~K~~I~~~~~iY-------------~~~l~~i~~~~~~~~~~~~~W~~m-------------~~ 144 (257)
T 3gs3_A 91 VINVVSMLLRDNSAQVIKRVIQACGSIY-------------KNGLQYLCSLMEPGDSAEQAWNIL-------------SL 144 (257)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHH-------------HHHHHHHTTSSSCCHHHHHHHHHH-------------HH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH-------------HHHHHHHhcCCCCcchHHHHHHHH-------------HH
Confidence 5555555555555544444444443322 1111111 1111 10111222222 23
Q ss_pred HHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 349 IRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 349 i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
+...+..+....+..||..+.+.+..+.-+..
T Consensus 145 lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT 176 (257)
T 3gs3_A 145 IKAQILDMIDNENDGIRTNAIKFLEGVVVLQS 176 (257)
T ss_dssp HHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCCcchHHHHHHHHHHHHHhhc
Confidence 44444455555677899999998888876543
No 118
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.56 E-value=0.18 Score=39.03 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=88.8
Q ss_pred HHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc------CCCchHHHHHHHHhHHHHhh--hchhhhHHHHHHHHHHH
Q 016814 168 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW 239 (382)
Q Consensus 168 ~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~ 239 (382)
..|..+..++..= -| .+.++|.+.+... -.++..-...++....+... +.-+.+..+++|.+..+
T Consensus 23 ~~r~~aL~sL~~D---~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEKE---SG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHHC---SS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 4466655555431 12 2556666655432 22445445555555555542 23455667888888876
Q ss_pred hccc---hhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccChhhhhhhhHH
Q 016814 240 LQDK---VYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEITCSRLLP 312 (382)
Q Consensus 240 l~d~---~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~~~~~~l~ 312 (382)
+-.. ...+|+-|++.++.++..+|.. .....+...+...+.|++ ......|+..+..++ .+....-++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG----~~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS----KNVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----HHHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH----HHHHHHhhhc
Confidence 5221 1289999999999999999873 356677777777777754 667777777776655 4545556668
Q ss_pred HHHhhccC
Q 016814 313 VVINASKD 320 (382)
Q Consensus 313 ~l~~~l~d 320 (382)
.+-...++
T Consensus 172 ~l~~~~~~ 179 (196)
T 4atg_A 172 HAEEYKRT 179 (196)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHH
Confidence 77666543
No 119
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.56 E-value=0.33 Score=42.07 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHH
Q 016814 13 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVR 92 (382)
Q Consensus 13 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR 92 (382)
.|...+.-...++-+-.+ ...+.+++-+.++..|++..+|+.++..|...+.. .......+++.+..+++|+++.|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 466666666666554333 46678888899999999999999999999998863 222335678888899999999999
Q ss_pred HHHHHHHHHHHHhh------CH-------H--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc
Q 016814 93 IAAAGKVTKFCRIL------NP-------E--LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 142 (382)
Q Consensus 93 ~~a~~~l~~l~~~~------~~-------~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~ 142 (382)
+.++.+...+-+.. .+ + .....+-..+.....+.+..||..+++.+..+.
T Consensus 118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 99998887765321 11 1 111233344444567788999999999888764
No 120
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.14 E-value=0.5 Score=39.79 Aligned_cols=186 Identities=12% Similarity=0.051 Sum_probs=110.6
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH------HH--HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814 73 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE------LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPL 144 (382)
Q Consensus 73 ~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~------~~--~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 144 (382)
...++..++..+..=+.+.|+-+...+..+.+.-... .. ...++..+....++++...- +-..+...++.
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~--~G~mLRecir~ 153 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALN--CGIMLRECIRH 153 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHH--HHHHHHHHHTS
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhH--HHHHHHHHHHh
Confidence 3467888888888888999999999998887643211 11 12355555555554433211 11111111110
Q ss_pred --cChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hh----hHhhhHHHHHHHHhcCCCchHHHHHHHH
Q 016814 145 --LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---ID----LLSQSLLPAIVELAEDRHWRVRLAIIEY 215 (382)
Q Consensus 145 --~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~---~~----~~~~~llp~l~~~~~d~~~~vr~~~~~~ 215 (382)
+......+..+--+.+.+..++.++-..+...+..+..... .+ .+ +.+...+.+++.++|+-+|+..++.
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~ny-d~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHY-DRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTH-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhH-HHHHHHHHHHhcCCcchhHHHHHHH
Confidence 00011112222334457777788888877777766543211 11 12 3456667778888888899999988
Q ss_pred hHHHHhhhch-hhh-----HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 016814 216 IPLLASQLGV-GFF-----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 261 (382)
Q Consensus 216 l~~l~~~~~~-~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 261 (382)
|+.+.-.-.. ... .+.-+..++.+|+|++..++-.|.+.+.-++.+
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 8887643221 111 145677788888888888888888888877754
No 121
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=95.90 E-value=0.29 Score=39.08 Aligned_cols=131 Identities=9% Similarity=-0.013 Sum_probs=87.5
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhH
Q 016814 39 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILP 117 (382)
Q Consensus 39 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~ 117 (382)
.++.++...+..+.|..++..++.....+.+ .-++.+-..+. -++|.+-...+.+++.+....+ ..+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-----~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-----HHHHH
Confidence 4556666667788898888888765433222 23444444443 3568877766666666654321 23557
Q ss_pred hhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 118 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 118 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
.+.+.+.|++..+|+.++...-.. ..+...+.+++++...+.|++.-|+.++..+|..++..
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~----~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLML----KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTC----GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 788889999999888887744222 12223466778888889999999999999999888765
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.41 E-value=0.13 Score=37.72 Aligned_cols=74 Identities=9% Similarity=0.094 Sum_probs=54.6
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhh----hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814 269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
...+..+...++++++.+...|+..+..+.+++|..+. ...++..+.+.+...++.||..++..+..+...+..
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 34666777777888888888888888888888886522 245666666666666778999999988888877654
No 123
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=95.35 E-value=0.86 Score=36.63 Aligned_cols=131 Identities=9% Similarity=-0.002 Sum_probs=84.1
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-CCCcHHHHHHH-HHHHHHHHHhhCHHHHHHhhh
Q 016814 39 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAA-AGKVTKFCRILNPELAIQHIL 116 (382)
Q Consensus 39 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l-~d~~~~VR~~a-~~~l~~l~~~~~~~~~~~~il 116 (382)
.++.++.+++..+.|..++..+....+.+.++ -++.+..++ ..++|.+-... ...++.+...- + ....
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-p----~~~~ 133 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-P----ELIS 133 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-G----GGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-H----HHHH
Confidence 35556666677778888888876543333222 233333333 34568765554 35556655431 1 2366
Q ss_pred HhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 117 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
+.+.+...|++..+|+.++..+-... .+...+.+++.+...+.|++.-|+.++..+|..++..
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYK----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHH----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 78888899999999888876542221 1122346777888889999999999999999888765
No 124
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.21 E-value=0.79 Score=35.45 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHHH--hChHHHHhhhHHHHHhhhcCcc---hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHh
Q 016814 244 VYSIRDAAANNLKRLAEE--FGPEWAMQHITPQVLEMINNPH---YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVIN 316 (382)
Q Consensus 244 ~~~vr~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~ 316 (382)
+...-....+....+..+ +.-+.+..+++|.++..+-.++ ...|+.|+..++.++..++.. .....+...+.+
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k 138 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKG 138 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHH
Confidence 444445555566666543 2236677889998888764322 279999999999999998864 456788888888
Q ss_pred hccCCCc--cHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCC
Q 016814 317 ASKDRVP--NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED 359 (382)
Q Consensus 317 ~l~d~~~--~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d 359 (382)
.+.|++. .....|+..|..+ |++.....++|.+....++
T Consensus 139 ~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIREHAEEYKRT 179 (196)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhcCHHHHHHH
Confidence 8888654 4777777777766 4555667778888877654
No 125
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=94.49 E-value=0.23 Score=37.41 Aligned_cols=73 Identities=8% Similarity=0.075 Sum_probs=50.0
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccC-CCccHHHHHHHHHHHHhhhhhH
Q 016814 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ 342 (382)
Q Consensus 270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~i~~~~~~ 342 (382)
..+..+...++++++.+...|+..+..+.++||..+ ....++..+.+.+.. .++.||..++..+..+...++.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 355566667777777777788888888888887642 124455555555543 4567888888888888877664
No 126
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.42 E-value=0.41 Score=34.99 Aligned_cols=98 Identities=9% Similarity=0.165 Sum_probs=65.7
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHhhh
Q 016814 45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCVK 120 (382)
Q Consensus 45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~l~ 120 (382)
..++||..=...|..+.. ++ ....+.+..+.+.+++.++.+...|+..+..+.+.+|..... ..++..+.
T Consensus 18 l~~~dw~~ileicD~I~~-----~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~ 91 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQ-----SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS 91 (140)
T ss_dssp SSSCCHHHHHHHHHHHTT-----ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHC-----CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 356677665555555431 11 122456777778888889999999999999999988876331 23445555
Q ss_pred hhcCCCchHHHHHHHHHHHhhccccChH
Q 016814 121 ELSSDSSQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 121 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
.+++..++.||..+...+..++..++.+
T Consensus 92 ~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 92 NVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 5555567788888888888887666543
No 127
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=94.32 E-value=0.89 Score=33.50 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=52.3
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccC------CCccHHHHHHHHHHHHhhh
Q 016814 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d------~~~~vR~~a~~~l~~i~~~ 339 (382)
..+..+...++++++.+...|+..+..+.++||..+ ....++..+.+.+.+ .++.||..++..+..+...
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 355566667778888888888888888888888642 235666667776654 2567888888888888877
Q ss_pred hhH
Q 016814 340 VDQ 342 (382)
Q Consensus 340 ~~~ 342 (382)
++.
T Consensus 118 f~~ 120 (148)
T 1mhq_A 118 FPE 120 (148)
T ss_dssp CTT
T ss_pred cCC
Confidence 754
No 128
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=94.26 E-value=0.48 Score=34.99 Aligned_cols=98 Identities=11% Similarity=0.078 Sum_probs=69.4
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhh
Q 016814 44 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCV 119 (382)
Q Consensus 44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l 119 (382)
...++||..=...|..+.. .+ ....+.+..+...+++.++.+...|+..+..+.+.+|...+ ...++..+
T Consensus 23 ~l~~~dw~~ileicD~I~~-----~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL 96 (149)
T 3g2s_A 23 LNKELDWASINGFCEQLNE-----DF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNEL 96 (149)
T ss_dssp TCSSCCHHHHHHHHHHGGG-----SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHC-----CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 3355677665555555431 11 22345677888888899999999999999999999987632 23456666
Q ss_pred hhhcCC------CchHHHHHHHHHHHhhccccCh
Q 016814 120 KELSSD------SSQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 120 ~~~~~d------~~~~vr~~a~~~l~~l~~~~~~ 147 (382)
.+++.+ .++.||..+...+..++..++.
T Consensus 97 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 97 IKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 667654 4678999999999998877654
No 129
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=93.99 E-value=1.4 Score=35.09 Aligned_cols=127 Identities=6% Similarity=-0.046 Sum_probs=85.8
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 82 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 82 (382)
.|...+.-+.|..|+..++...+...+ .-++.+..++. -++|.+--..+.+++.+...- ...+.+.+.+
T Consensus 62 ~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~~i~~ 131 (220)
T 2b6c_A 62 AYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTIFAL 131 (220)
T ss_dssp HHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHHHHH
T ss_pred HHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHHHHHH
Confidence 344455666777777777665443332 33445555554 567888777776677766431 2336788888
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814 83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 144 (382)
Q Consensus 83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 144 (382)
...|++.-+|..|+.++....+.-.. ..+++.+...+.|++..||.+...+|..+...
T Consensus 132 W~~s~~~w~rR~ai~~~l~~~~~~~~----~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 132 FYGAENFWNRRVALNLQLMLKEKTNQ----DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HTTCSSHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 99999887777777765433332222 35577777799999999999999999999865
No 130
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.82 E-value=2.7 Score=35.49 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=115.1
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-chh-----hh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-
Q 016814 191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG-----FF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE- 261 (382)
Q Consensus 191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~-----~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~- 261 (382)
+.++..+...+..=++..|+.+...+..+...- |.. .+ .+.++..+.....+++-.. ..|.+...
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl------~~G~mLRec 150 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL------NCGIMLREC 150 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH------HHHHHHHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh------HHHHHHHHH
Confidence 556667777777778888888888887776422 211 11 1456666666666554321 11111111
Q ss_pred hChHHH-----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC---hhh---hhhhhHHHHHhhccCCCccHHHHHH
Q 016814 262 FGPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEI---TCSRLLPVVINASKDRVPNIKFNVA 330 (382)
Q Consensus 262 ~~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~---~~~~~l~~l~~~l~d~~~~vR~~a~ 330 (382)
...+.+ ....+-.+.+....++..+-.-|...+..+..... .++ -.+.++..+-+++.++|+-+|..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 111211 12233356677788888887777777777654322 111 2345677777899999999999999
Q ss_pred HHHHHHhhhhhHH-----HH-HHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 331 KVLQSLIPIVDQS-----MV-EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 331 ~~l~~i~~~~~~~-----~~-~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
+.|+.+...=.+- ++ ...-+..+-.++.|+...++..|...+..++.
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 9999997643221 11 14556677778999999999999999988764
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.57 E-value=0.67 Score=34.20 Aligned_cols=73 Identities=7% Similarity=-0.023 Sum_probs=52.1
Q ss_pred hhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH----HHHhHHHHHHHhcCC------CCccHHhHHHHHHHHHHHH
Q 016814 309 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPCLVELTED------PDVDVRFFATQAIQSIDHV 378 (382)
Q Consensus 309 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~----~~~~i~~~l~~l~~d------~~~~vr~~a~~al~~~~~~ 378 (382)
..+..+.+.++++++++...|+..|..+.+..|... ....++..|.+++.+ ++.+||......+..++..
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 455566677778888888888888888888777543 235666777776654 4667888888888888776
Q ss_pred hcc
Q 016814 379 MMS 381 (382)
Q Consensus 379 ~~~ 381 (382)
++.
T Consensus 128 f~~ 130 (149)
T 3g2s_A 128 LPE 130 (149)
T ss_dssp CTT
T ss_pred hCC
Confidence 653
No 132
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=93.46 E-value=1.6 Score=34.98 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=91.6
Q ss_pred hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc-cCCCHHHHHHH-HHHHHHHHHHhCCcccccchHHHHH
Q 016814 4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMV-ANQLYELCEAVGPEPTRMDLVPAYV 81 (382)
Q Consensus 4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~d~~~~vR~~a-~~~l~~l~~~~~~~~~~~~ll~~l~ 81 (382)
.|..++..+.|..|+..+....+.+.++. ++.+..++ ..++|.+--.. ...++.+...- .....+.+.
T Consensus 68 ~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~~~l~ 137 (232)
T 3jxy_A 68 ELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELISAYIP 137 (232)
T ss_dssp HHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGGGTHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHHHHHH
Confidence 34555556677777766654444343322 22333333 35677775555 35666666541 122567777
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814 82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 161 (382)
Q Consensus 82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 161 (382)
+...|++.-+|..|+..+......... ..+++.+...+.|++..||.+...+|..+....+ +.+.+++.+-
T Consensus 138 ~W~~s~~~w~rR~ai~~~l~~~~~~d~----~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p-----~~v~~fl~~~ 208 (232)
T 3jxy_A 138 KWIASDNIWLQRAAILFQLKYKQKMDE----ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP-----DVVWEYVQNN 208 (232)
T ss_dssp HHHHSSCHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHS
T ss_pred HHhcCCchHHHHHHHHHHHHHHhCCCH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH-----HHHHHHHHHC
Confidence 888888877777776655333222222 2456677788999999999999999999986532 3455555543
Q ss_pred hcCCChHHHHHHHHhhH
Q 016814 162 LKDEFPDVRLNIISKLD 178 (382)
Q Consensus 162 l~d~~~~vr~~~~~~l~ 178 (382)
.-++-.++.+++.+.
T Consensus 209 --~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 209 --ELAPLSKREAIKHIK 223 (232)
T ss_dssp --CCCHHHHHHHTTTTH
T ss_pred --CCCHHHHHHHHHhcc
Confidence 223455555555554
No 133
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.89 E-value=2.1 Score=31.53 Aligned_cols=99 Identities=5% Similarity=-0.049 Sum_probs=70.7
Q ss_pred hhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH----HHHhHHHH
Q 016814 277 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPC 352 (382)
Q Consensus 277 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~----~~~~i~~~ 352 (382)
+.+..++|..=...+..+..=. - --...+..+.+.++++++++...|+..|..+....|... ....++..
T Consensus 12 ~~l~~~dw~~~leicD~I~~~~--~----~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~e 85 (148)
T 1mhq_A 12 PSMSEQDWSAIQNFCEQVNTDP--N----GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNE 85 (148)
T ss_dssp TTCSSCCHHHHHHHHHHHHHSS--H----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHcCC--c----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 3445677865444444443311 1 223455667777889999999999999999999988653 23678888
Q ss_pred HHHhcCC------CCccHHhHHHHHHHHHHHHhcc
Q 016814 353 LVELTED------PDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 353 l~~l~~d------~~~~vr~~a~~al~~~~~~~~~ 381 (382)
|.++..+ .+.+||..+...+..++..++.
T Consensus 86 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 86 LIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 8887764 4778999999999999987754
No 134
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.84 E-value=1.1 Score=33.88 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=48.4
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccC------CCccHHHHHHHHHHHHhhh
Q 016814 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d------~~~~vR~~a~~~l~~i~~~ 339 (382)
..+..+...+++++..+...|+..+..+.++||..+ ....++..+.+.+.. .+..||..+++.+..+...
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777777777777542 224456666665542 2456888888888888877
Q ss_pred hhH
Q 016814 340 VDQ 342 (382)
Q Consensus 340 ~~~ 342 (382)
++.
T Consensus 130 f~~ 132 (171)
T 1juq_A 130 LPE 132 (171)
T ss_dssp CTT
T ss_pred cCC
Confidence 764
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.75 E-value=1 Score=33.77 Aligned_cols=96 Identities=11% Similarity=0.161 Sum_probs=66.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhhhh
Q 016814 46 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCVKE 121 (382)
Q Consensus 46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~ 121 (382)
.++||..=...|..+.. .+ ....+.+..+.+.+++.++.|...|+..|..+.+.++.... ...++..+..
T Consensus 29 ~~~Dw~~~leicD~I~~-----~~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~ 102 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGS-----TP-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA 102 (163)
T ss_dssp SSCCHHHHHHHHHHHHH-----SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 46777776666655542 11 12245677788888889999999999999999999987532 1234444545
Q ss_pred hcCC-CchHHHHHHHHHHHhhccccCh
Q 016814 122 LSSD-SSQHVRSALASVIMGMAPLLGK 147 (382)
Q Consensus 122 ~~~d-~~~~vr~~a~~~l~~l~~~~~~ 147 (382)
++.. .++.||..+...+..+...++.
T Consensus 103 l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 103 VIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4443 5678999998888888776654
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=92.16 E-value=1.2 Score=35.56 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=41.7
Q ss_pred hhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH----HHHhHHHHHHHhcC-CCCccHHhHHHHHHHHHHHHhc
Q 016814 309 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPCLVELTE-DPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 309 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~----~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~~~~~~~ 380 (382)
..+..+.+-++++++++...|+..|..+.++.|... ....++..|.+++. .++.+||..+...+..++..+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 344455556666677777777777777766665432 12344444444432 2455677777777777766554
No 137
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=91.87 E-value=9.5 Score=36.81 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=69.4
Q ss_pred hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCC---CcHHHHHHHHHHHHHHHH
Q 016814 31 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRD---NEAEVRIAAAGKVTKFCR 104 (382)
Q Consensus 31 ~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d---~~~~VR~~a~~~l~~l~~ 104 (382)
+.+...++|++......++..+...+..++..++. +.+ +.+.+.++..+...+.. .+++--.++++++..++.
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~-l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLE-LDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHh-cCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 34566788888888999999999999999999885 444 44444455555555555 567767778888888877
Q ss_pred hhCHH-HHHHhhhHhhhh---hcCCCchHHHHHHHHHHHhhcc
Q 016814 105 ILNPE-LAIQHILPCVKE---LSSDSSQHVRSALASVIMGMAP 143 (382)
Q Consensus 105 ~~~~~-~~~~~il~~l~~---~~~d~~~~vr~~a~~~l~~l~~ 143 (382)
.+-.. .+..++.|.+.- .++-.++.--..+.+.+..++.
T Consensus 413 ~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 413 FIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 65332 122234444433 3333333333445555555543
No 138
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=91.66 E-value=1.6 Score=34.82 Aligned_cols=99 Identities=12% Similarity=0.210 Sum_probs=67.5
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhh
Q 016814 44 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCV 119 (382)
Q Consensus 44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l 119 (382)
...++||..=...+..+.. + .....+.+..+.+.+++.++.|...|+..|..+.+.+|.... ...++..+
T Consensus 20 ~~~~~dw~~ileicD~I~~-----~-~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l 93 (226)
T 3zyq_A 20 LLLETDWESILQICDLIRQ-----G-DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEEL 93 (226)
T ss_dssp TCSSCCHHHHHHHHHHHHT-----T-SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHH
Confidence 3356677766666665541 1 222346788888888999999999999999999999887522 12344444
Q ss_pred hhhcC-CCchHHHHHHHHHHHhhccccChH
Q 016814 120 KELSS-DSSQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 120 ~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
.++++ ..++.||..+...+..++..+..+
T Consensus 94 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 94 KDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 44443 355789999999888888766543
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.68 E-value=4.3 Score=30.65 Aligned_cols=98 Identities=7% Similarity=-0.003 Sum_probs=69.3
Q ss_pred hhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH----HHHhHHHHH
Q 016814 278 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPCL 353 (382)
Q Consensus 278 ~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~----~~~~i~~~l 353 (382)
.+..++|..=...+..+..=. - --...+-.+.+.++++++++...|+..|..+.+..|... ....++..|
T Consensus 25 ~l~~~Dw~~ileicD~I~~~~--~----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 25 SNRQEDWEYIIGFCDQINKEL--E----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp TCSSCCHHHHHHHHHHHHHST--T----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCC--c----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 345667865444444443311 1 123455667788889999999999999999999888643 235677778
Q ss_pred HHhcCC------CCccHHhHHHHHHHHHHHHhcc
Q 016814 354 VELTED------PDVDVRFFATQAIQSIDHVMMS 381 (382)
Q Consensus 354 ~~l~~d------~~~~vr~~a~~al~~~~~~~~~ 381 (382)
.++... .+.+||..+...+..++..++.
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 887652 4678999999999999987764
No 140
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=90.54 E-value=7 Score=32.84 Aligned_cols=134 Identities=14% Similarity=0.222 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHhh-CHHHHHHhhhHhhhhh-cC--------CCchHHHHHHHHHHHhhccccChHh--HHHhhHH
Q 016814 89 AEVRIAAAGKVTKFCRIL-NPELAIQHILPCVKEL-SS--------DSSQHVRSALASVIMGMAPLLGKDA--TIEQLLP 156 (382)
Q Consensus 89 ~~VR~~a~~~l~~l~~~~-~~~~~~~~il~~l~~~-~~--------d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~ 156 (382)
..||+..++.+..+.+.. ..+.+.+.++|.+.+. +. -.+++|-......+..+...+.+.. ..+.++.
T Consensus 43 R~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe 122 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 122 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456666666666666543 3344556666666542 21 1346677777777777766555432 2344455
Q ss_pred HHHHhhcC---CChHHHHHHHHhhHHhhhh-------hchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh
Q 016814 157 IFLSLLKD---EFPDVRLNIISKLDQVNQV-------IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 223 (382)
Q Consensus 157 ~l~~~l~d---~~~~vr~~~~~~l~~~~~~-------~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 223 (382)
.-.+++++ +.|+.|.+..+-+..+... ++++.+ ..++..+...++++...|-..++..+..+...+
T Consensus 123 ~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f-klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 123 CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF-KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 198 (321)
T ss_dssp HHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 55566664 5799999988888776543 344444 566777777777877777777777776666555
No 141
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=89.40 E-value=1.2 Score=32.27 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=63.9
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH--HhhhH
Q 016814 40 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI--QHILP 117 (382)
Q Consensus 40 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~--~~il~ 117 (382)
.+.+..+|.+|-.--....-|.++......+ ...++++.+.+.+++.++.|...|++.|..++..-+..... ..-..
T Consensus 15 ~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~-~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~ 93 (140)
T 1vdy_A 15 MIDAVTSDEDKVAPVYKLEEICDLLRSSHVS-IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV 93 (140)
T ss_dssp HHHHTTCSCSSCCCHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH
T ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence 3566777777666666666666655332212 23678999999999999999999999999998766554211 11112
Q ss_pred hhhhhc-----------CCCchHHHHHHHHHHHhhc
Q 016814 118 CVKELS-----------SDSSQHVRSALASVIMGMA 142 (382)
Q Consensus 118 ~l~~~~-----------~d~~~~vr~~a~~~l~~l~ 142 (382)
.+..+. +|....||..|-+++..+.
T Consensus 94 ~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 94 AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 222222 1223578888877766554
No 142
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=89.22 E-value=4.6 Score=28.85 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhh
Q 016814 231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL 310 (382)
Q Consensus 231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 310 (382)
.++|-+...++|.+|.+....+..+..+- +.++|.+.+.+.+.+.. --...+..+...+..+ ....+
T Consensus 31 p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~---W~ywil~~lv~~~~~~-~~~~l 97 (134)
T 3ut4_A 31 PIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIM---WKYWVIKLMIPYLIYP-NKQLV 97 (134)
T ss_dssp HHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHH---HHHHHHHHHGGGCCHH-HHHHH
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChH---HHHHHHHHHHHcCCHH-HHHHH
Confidence 46666677777777777666666555432 23555555555433321 1334455555555554 45566
Q ss_pred HHHHHhhccCCCc-----cHHHHHHHHHHHH
Q 016814 311 LPVVINASKDRVP-----NIKFNVAKVLQSL 336 (382)
Q Consensus 311 l~~l~~~l~d~~~-----~vR~~a~~~l~~i 336 (382)
.|.+.++...+.. .+...|-+.|..+
T Consensus 98 ~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 98 KSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 6777776665522 2445555555444
No 143
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=88.33 E-value=13 Score=32.93 Aligned_cols=249 Identities=11% Similarity=0.130 Sum_probs=135.2
Q ss_pred CCcHHHHHHHHHHHHHHHHh--hC----HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc-cChH-hHHHhhHHH
Q 016814 86 DNEAEVRIAAAGKVTKFCRI--LN----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-LGKD-ATIEQLLPI 157 (382)
Q Consensus 86 d~~~~VR~~a~~~l~~l~~~--~~----~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~~~-~~~~~l~~~ 157 (382)
|++|.=-..+.+.+..+... +. +..+...++-.+.+++.++++.=|......++.+-.. .+.. .....+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888877653 22 2233345777788899999999999998888776433 3322 223444455
Q ss_pred HHHhhcC-CChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCchH-HHHHHHHhHHHHhhhchhhhHHHH
Q 016814 158 FLSLLKD-EFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRV-RLAIIEYIPLLASQLGVGFFDDKL 232 (382)
Q Consensus 158 l~~~l~d-~~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~v-r~~~~~~l~~l~~~~~~~~~~~~l 232 (382)
+..++.+ +...--...++.++.+...... +.....+...+..+.+.+.... ...+..++..+.+. ++... ..+
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~L~-~~v 285 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLT-EPV 285 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-CGGGH-HHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc-CcHhH-HHH
Confidence 5555433 2222233455555555544321 1111223333444444444322 23444455444432 22222 233
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHh---hhHHHHHhhhcCcchHHHHHHHHHHHH--hccccChhhhh
Q 016814 233 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ---HITPQVLEMINNPHYLYRMTILRAISL--LAPVMGSEITC 307 (382)
Q Consensus 233 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~~l~~~~~~~r~~a~~~l~~--l~~~~~~~~~~ 307 (382)
+..+.+..--.+..-...-+.-+..+.+..+++.+.. .++..+...+.+++..|-+.|+..... +...+. ...
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~--~n~ 363 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNA 363 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH--hch
Confidence 3334333322233333345667777777777766543 455666778889999998888754422 111111 123
Q ss_pred hhhHHHHHhh-----ccCCCccHHHHHHHHHHHHhh
Q 016814 308 SRLLPVVINA-----SKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 308 ~~~l~~l~~~-----l~d~~~~vR~~a~~~l~~i~~ 338 (382)
..++|.+... -++.+..||..+..++..+.+
T Consensus 364 ~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 364 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred hhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3455555443 345677899999999986654
No 144
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=88.26 E-value=3.9 Score=30.39 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=63.6
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhh----hhhhhHHH-
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPV- 313 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~- 313 (382)
+.+++|..-...+..+.. +.. -....+..+...++ ++++.+...|+..+..+.++||..+ ....++..
T Consensus 29 l~~~Dw~~~leicD~I~~-----~~~-~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~ 102 (157)
T 1elk_A 29 LQSEDWALNMEICDIINE-----TEE-GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV 102 (157)
T ss_dssp CSSCCHHHHHHHHHHHHH-----SSS-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC-----CCc-cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH
Confidence 345677664444443322 111 12346667777787 5788899999999999999999752 23446665
Q ss_pred HHhhcc---CCCccHHHHHHHHHHHHhhhhh
Q 016814 314 VINASK---DRVPNIKFNVAKVLQSLIPIVD 341 (382)
Q Consensus 314 l~~~l~---d~~~~vR~~a~~~l~~i~~~~~ 341 (382)
+.+.+. ++...||..+++.+..+...++
T Consensus 103 Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 103 LVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp THHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 555553 3345799999999999988765
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=88.18 E-value=8.3 Score=30.49 Aligned_cols=69 Identities=9% Similarity=0.079 Sum_probs=36.9
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccC-CCccHHHHHHHHHHHHhh
Q 016814 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD-RVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~i~~ 338 (382)
..+..+...+.++++.+...|+..+..+.+++|..+ ....++..+.+.+++ .+..||..+++.+..+..
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666666665432 123455555555443 234455555555555543
No 146
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=87.86 E-value=13 Score=32.36 Aligned_cols=252 Identities=10% Similarity=0.111 Sum_probs=135.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHh--hCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc-ChH-hHHHhhHH
Q 016814 85 RDNEAEVRIAAAGKVTKFCRI--LNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKD-ATIEQLLP 156 (382)
Q Consensus 85 ~d~~~~VR~~a~~~l~~l~~~--~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~-~~~~~l~~ 156 (382)
.|++|.=-..+.+.+..+... +.+. .+...++-.+..++.++++.=|......+..+-..+ +.. .....+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 356788778888888887664 2333 122346677888999999999999988888765332 221 12233444
Q ss_pred HHHHhhcCC-ChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCchH-HHHHHHHhHHHHhhhchhhhHHH
Q 016814 157 IFLSLLKDE-FPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRV-RLAIIEYIPLLASQLGVGFFDDK 231 (382)
Q Consensus 157 ~l~~~l~d~-~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~v-r~~~~~~l~~l~~~~~~~~~~~~ 231 (382)
.+..++.+. ...--...+..++.+...... +.-...+...+..+.+.++... ...+..++.++.+. ++... ..
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-Dp~L~-~~ 251 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLT-EP 251 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-CGGGH-HH
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh-CchhH-HH
Confidence 455544332 222223455556665554321 1111223333444444444321 23444555554432 22222 23
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHh---hhHHHHHhhhcCcchHHHHHHHHHHHH--hccccC--hh
Q 016814 232 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ---HITPQVLEMINNPHYLYRMTILRAISL--LAPVMG--SE 304 (382)
Q Consensus 232 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~~l~~~~~~~r~~a~~~l~~--l~~~~~--~~ 304 (382)
++..+.+..--.+..-...-+.-+..+.+..+++.+.. .++..+...+.+++..|-+.|+..... +...+. ..
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~ 331 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA 331 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH
Confidence 33333333322333333345566777777777765543 455566677889999998888755422 111111 11
Q ss_pred hhhhhhHHHHHhh-ccCCCccHHHHHHHHHHHHhh
Q 016814 305 ITCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 305 ~~~~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~ 338 (382)
.....++|.+.+. -++.+..||..+..++..+.+
T Consensus 332 ~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 332 KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 2344455555443 456678899999999988754
No 147
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=87.22 E-value=6 Score=28.61 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=48.8
Q ss_pred HHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814 197 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 266 (382)
Q Consensus 197 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 266 (382)
+.+...+++|..-...+..+..+......+ +...+++.+.+.|++.++.++..|+..|..++.. |.+.
T Consensus 16 V~~ATs~d~~~~pgylm~EIA~~T~~s~~~-~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~-Gs~~ 83 (140)
T 1vdy_A 16 IDAVTSDEDKVAPVYKLEEICDLLRSSHVS-IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK-SGSE 83 (140)
T ss_dssp HHHTTCSCSSCCCHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT-SCHH
T ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh-CCHH
Confidence 455667777776666666666665433223 2357899999999999999999999999998874 4443
No 148
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=87.10 E-value=6.2 Score=28.22 Aligned_cols=99 Identities=8% Similarity=0.004 Sum_probs=59.3
Q ss_pred chhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh
Q 016814 185 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 264 (382)
Q Consensus 185 ~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 264 (382)
|.+.. ..++|.+...++|.||-+...++..|.... +.+.|.+...+++.+..=+ ...+..+...+..
T Consensus 25 ~~~~i-~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~ 91 (134)
T 3ut4_A 25 IDNEI-EPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWK---YWVIKLMIPYLIY 91 (134)
T ss_dssp CHHHH-HHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCH
T ss_pred CHHHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCH
Confidence 55555 678888899999999998888877776543 2455666665554332211 2333334444433
Q ss_pred HHHHhhhHHHHHhhhcCc-----chHHHHHHHHHHHHh
Q 016814 265 EWAMQHITPQVLEMINNP-----HYLYRMTILRAISLL 297 (382)
Q Consensus 265 ~~~~~~l~~~l~~~l~~~-----~~~~r~~a~~~l~~l 297 (382)
+ ....+.|.+.....++ ...+.+.|-..+...
T Consensus 92 ~-~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 92 P-NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp H-HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 3 3345666666666554 356666666666554
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=86.46 E-value=7.8 Score=30.65 Aligned_cols=96 Identities=6% Similarity=0.094 Sum_probs=63.1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHhhh
Q 016814 45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCVK 120 (382)
Q Consensus 45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~l~ 120 (382)
..++||..-...+..+.. ++. ...+.+..+.+-+++.++.|...|+..|..+.+.+|..... ..++..+.
T Consensus 18 ~~~~dw~~~leicd~i~~-----~~~-~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~ 91 (220)
T 1dvp_A 18 RLEPDWPSILLICDEINQ-----KDV-TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFS 91 (220)
T ss_dssp CSSCCHHHHHHHHHHHHT-----TSS-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhhcC-----CCc-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHH
Confidence 346777765555554431 111 23456777888888999999999999999999888764221 22444444
Q ss_pred hhcC-CCchHHHHHHHHHHHhhccccC
Q 016814 121 ELSS-DSSQHVRSALASVIMGMAPLLG 146 (382)
Q Consensus 121 ~~~~-d~~~~vr~~a~~~l~~l~~~~~ 146 (382)
.+++ ..+..||..+...+..+...+.
T Consensus 92 ~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 92 SFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 4443 4567889888888888776554
No 150
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=86.02 E-value=33 Score=35.09 Aligned_cols=149 Identities=9% Similarity=0.048 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-hhhh
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-ITCS 308 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~ 308 (382)
+.++.+...++.+.++.|+.-+...-..+.+.+ .+.+...++..+.....+.+..--.+|+..+..++...... ....
T Consensus 399 ~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a 477 (1323)
T 3s4w_B 399 PSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNA 477 (1323)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHH
Confidence 456677778888999999999988888888777 35567778888877766666555667888888888654332 1223
Q ss_pred hhHHHHHhhccCCCc-cHHHHHHHHHHHHhhhhh---HHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814 309 RLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380 (382)
Q Consensus 309 ~~l~~l~~~l~d~~~-~vR~~a~~~l~~i~~~~~---~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 380 (382)
.++..++..+.+=+. ++|.. ...|..++-.-+ ...+.+.+.-.+.+-+..++.+.++...-+.-.++..++
T Consensus 478 ~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~~ 552 (1323)
T 3s4w_B 478 AFVKGILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIMA 552 (1323)
T ss_dssp HHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHHH
Confidence 345555555555443 35543 555555442111 112445555566677777777776666655555555554
No 151
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=84.62 E-value=11 Score=32.35 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=6.8
Q ss_pred chHHHHHHhcCCCc
Q 016814 75 DLVPAYVRLLRDNE 88 (382)
Q Consensus 75 ~ll~~l~~~l~d~~ 88 (382)
++.|.+.+++.|+.
T Consensus 59 ei~~~~~~L~~d~~ 72 (351)
T 3gvo_A 59 EILQAAYQLMTDVF 72 (351)
T ss_dssp HHGGGHHHHHTSTT
T ss_pred HHHHhHHHHHhChh
Confidence 34444555555543
No 152
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=84.42 E-value=17 Score=30.50 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=48.5
Q ss_pred CCCchHHHHHHHHhHHHHhhhc-------hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814 203 DRHWRVRLAIIEYIPLLASQLG-------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 263 (382)
Q Consensus 203 d~~~~vr~~~~~~l~~l~~~~~-------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 263 (382)
++.|+.|......+..+..+.- ++.+ +.++..+....+++..+|-+.++..+..+...++
T Consensus 133 ~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f-klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 133 EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF-KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp TCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 4678999999999998876543 3332 4678888899999999999999999999888774
No 153
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=83.77 E-value=18 Score=30.56 Aligned_cols=7 Identities=14% Similarity=0.050 Sum_probs=3.0
Q ss_pred HhhccCC
Q 016814 315 INASKDR 321 (382)
Q Consensus 315 ~~~l~d~ 321 (382)
..++.|+
T Consensus 276 ~~L~~d~ 282 (333)
T 3bwt_A 276 QSLLNDS 282 (333)
T ss_dssp HHHHTST
T ss_pred HHHHcCC
Confidence 3444444
No 154
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=83.65 E-value=11 Score=30.45 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc-ccChh
Q 016814 231 KLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSE 304 (382)
Q Consensus 231 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~-~~~~~ 304 (382)
.+.|.+....++ +...+|..++..+|.+++.-.++. ....++|.+...++..+.-.+..|...+.++.. ..|-+
T Consensus 101 yLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~ 180 (268)
T 2fv2_A 101 FLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLA 180 (268)
T ss_dssp GTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHH
Confidence 355555444443 346789899999999887644432 346789999998888888888888888888642 22221
Q ss_pred h---------hhhhhH-HHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHH------HhcCCCCccHHhHH
Q 016814 305 I---------TCSRLL-PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV------ELTEDPDVDVRFFA 368 (382)
Q Consensus 305 ~---------~~~~~l-~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~------~l~~d~~~~vr~~a 368 (382)
+ ....++ ..+..+..++++.+-...+++.-.+.............+|.-. .++. .|+.++.+-
T Consensus 181 YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~~~l~-~D~~~k~~l 259 (268)
T 2fv2_A 181 YICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK-DDTTTKRWL 259 (268)
T ss_dssp HHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTHHHHT-SCHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHHHHHh-cCHHHHHHH
Confidence 1 122333 2344455677776667777777777665444333333333221 1122 255566555
Q ss_pred HHHHH
Q 016814 369 TQAIQ 373 (382)
Q Consensus 369 ~~al~ 373 (382)
.+-+.
T Consensus 260 ~qLl~ 264 (268)
T 2fv2_A 260 AQLVK 264 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=82.98 E-value=12 Score=27.68 Aligned_cols=95 Identities=11% Similarity=0.147 Sum_probs=65.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHh-h
Q 016814 46 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAI----QHILPC-V 119 (382)
Q Consensus 46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~-l 119 (382)
.++||..=...|..+.. ++ ....+.+..+.+.++ ..++.|...|+..+..+.+.+|..... ..++.. +
T Consensus 30 ~~~Dw~~~leicD~I~~-----~~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~L 103 (157)
T 1elk_A 30 QSEDWALNMEICDIINE-----TE-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVL 103 (157)
T ss_dssp SSCCHHHHHHHHHHHHH-----SS-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHH
Confidence 46677776666665542 12 122456777777786 578999999999999999999876332 234554 4
Q ss_pred hhhcC---CCchHHHHHHHHHHHhhccccC
Q 016814 120 KELSS---DSSQHVRSALASVIMGMAPLLG 146 (382)
Q Consensus 120 ~~~~~---d~~~~vr~~a~~~l~~l~~~~~ 146 (382)
..++. ++...||..+...+..+...++
T Consensus 104 vk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 104 VRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 55553 3456899999999888887665
No 156
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=82.16 E-value=25 Score=30.64 Aligned_cols=249 Identities=10% Similarity=0.085 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHh--C----CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHHH-HHHhhhHh
Q 016814 47 DKSWRVRYMVANQLYELCEAV--G----PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPEL-AIQHILPC 118 (382)
Q Consensus 47 d~~~~vR~~a~~~l~~l~~~~--~----~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~-~~~~-~~~~il~~ 118 (382)
|++|.=-+.+.+.+..+...- . ........+-.+++++.+++++=|...-..|..+-..+ +... +...+-..
T Consensus 95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inni 174 (403)
T 3fga_B 95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 174 (403)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 456766677777776665532 1 12222335666788999999999988877777654332 2221 11111112
Q ss_pred hhhhcCCCc-hHHHHHHHHHHHhhccccC---hHhHHHhhHHHHHHhhcCCChH-HHHHHHHhhHHhhhhhchhhHhhhH
Q 016814 119 VKELSSDSS-QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQSL 193 (382)
Q Consensus 119 l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~~~~~l~~~~~~~~~~~~~~~l 193 (382)
+...+.+.. ..--....+.++.+...+. ++.....+...+..+-+..+-. .-.....++..+.+. ...+...+
T Consensus 175 f~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK--Dp~L~~~v 252 (403)
T 3fga_B 175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEPV 252 (403)
T ss_dssp HHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH--CGGGHHHH
T ss_pred HHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh--CchhHHHH
Confidence 222211111 1111234444444443332 1111112223333333332211 112222233333221 01122344
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHH---HHHHHHHHhccchhHHHHHHHHHHHH--HHHHhChHHHH
Q 016814 194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKR--LAEEFGPEWAM 268 (382)
Q Consensus 194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~ 268 (382)
+..+....--.+..-....+..+..+....++..+.+. ++..+...+.+++..|-+.|+..+.. +...+. ...
T Consensus 253 i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~--~n~ 330 (403)
T 3fga_B 253 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNA 330 (403)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHH--HhH
Confidence 44444444444444455677778888888887776543 45555667788999999988766522 111111 112
Q ss_pred hhhHHHHHhhh-----cCcchHHHHHHHHHHHHhcc
Q 016814 269 QHITPQVLEMI-----NNPHYLYRMTILRAISLLAP 299 (382)
Q Consensus 269 ~~l~~~l~~~l-----~~~~~~~r~~a~~~l~~l~~ 299 (382)
..++|.+...+ ++-+..+|..+..++..+.+
T Consensus 331 ~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 331 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 33555544333 23456788888888877654
No 157
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=81.02 E-value=29 Score=30.73 Aligned_cols=249 Identities=11% Similarity=0.087 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH--hCCc----ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-HHHHhhhHh
Q 016814 47 DKSWRVRYMVANQLYELCEA--VGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-LAIQHILPC 118 (382)
Q Consensus 47 d~~~~vR~~a~~~l~~l~~~--~~~~----~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~-~~~-~~~~~il~~ 118 (382)
|++|.=-+.+.+.+..+.+. +... ......+-.+++++.+++++-|...-..|..+-..+ +.. .+...+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45676667777776666543 2222 122346777888999999999988877776664332 221 111111122
Q ss_pred hhhhcCC-CchHHHHHHHHHHHhhccccC---hHhHHHhhHHHHHHhhcCCChH-HHHHHHHhhHHhhhhhchhhHhhhH
Q 016814 119 VKELSSD-SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQSL 193 (382)
Q Consensus 119 l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~~~~~l~~~~~~~~~~~~~~~l 193 (382)
+...+.+ ....--....+.++.+...+. ++.....+...+..+.+...-. --.....++..+.+. ...+...+
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~v 285 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEPV 285 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH--CGGGHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc--CcHhHHHH
Confidence 2222211 111111244455555544332 1211222223333333332211 111222222232221 01122334
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHH---HHHHHHHHhccchhHHHHHHHHHHHHH--HHHhChHHHH
Q 016814 194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWAM 268 (382)
Q Consensus 194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~~--~~~~~~~~~~ 268 (382)
+..+....--.+..-....+..+..+....++..+.+. ++..+...+.+++..|-+.|+..+..- ...+. ...
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~--~n~ 363 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNA 363 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH--hch
Confidence 44444443333444445677778888888888777644 555566778899999999988665321 21111 113
Q ss_pred hhhHHHHHhhhc-----CcchHHHHHHHHHHHHhcc
Q 016814 269 QHITPQVLEMIN-----NPHYLYRMTILRAISLLAP 299 (382)
Q Consensus 269 ~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~ 299 (382)
..++|.+...+. +-+..+|..+..++..+.+
T Consensus 364 ~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 364 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred hhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 446676665442 2345689888888877654
No 158
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=80.37 E-value=44 Score=32.32 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=58.2
Q ss_pred HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC--hHhHHHhhHHHHHHhhcC---CChHHHHHHHHhhHHhhhhh
Q 016814 110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQVI 184 (382)
Q Consensus 110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d---~~~~vr~~~~~~l~~~~~~~ 184 (382)
.+.+.+.|.+...+.+++..+...+..++..++..-+ ++...+.++..+...+.. ..+.-...+++++..++..+
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 4456677788888889999999888888888886433 245556666666666665 34555556677777776554
Q ss_pred chh-hHhhhHHHHHHHH
Q 016814 185 GID-LLSQSLLPAIVEL 200 (382)
Q Consensus 185 ~~~-~~~~~llp~l~~~ 200 (382)
-.. .+...+.|.+.-+
T Consensus 415 v~~~~yr~hl~~lL~l~ 431 (799)
T 1vsy_4 415 VMDKLYRVHITNVLSML 431 (799)
T ss_dssp TTSTTGGGHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHH
Confidence 332 2334444444433
No 159
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=73.26 E-value=9.2 Score=28.18 Aligned_cols=73 Identities=8% Similarity=0.047 Sum_probs=44.1
Q ss_pred hhHHHHHhhhcC-cchHHHHHHHHHHHHhccccChhhh----hhhhHHH-HHhhccCC---CccHHHHHHHHHHHHhhhh
Q 016814 270 HITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV-VINASKDR---VPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 270 ~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~-l~~~l~d~---~~~vR~~a~~~l~~i~~~~ 340 (382)
..+..+...+.. ++..+...|+..+..+.++||..+. ...++.. +.+.+.++ ...||..+++.+..+...+
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 355555566653 4666666677777777777776521 2234432 44444432 2358888888888888766
Q ss_pred hH
Q 016814 341 DQ 342 (382)
Q Consensus 341 ~~ 342 (382)
+.
T Consensus 133 ~~ 134 (152)
T 3rru_A 133 PG 134 (152)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 160
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=73.17 E-value=35 Score=27.55 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=68.5
Q ss_pred hHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh-hH--
Q 016814 271 ITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-DQ-- 342 (382)
Q Consensus 271 l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~-~~-- 342 (382)
+.|.+...-++.. ...|.+++..++.+.+.-..+. ...+++|..++.+...+.-.+..|...+.+|...- |-
T Consensus 102 LyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~Y 181 (268)
T 2fv2_A 102 LYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAY 181 (268)
T ss_dssp THHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred hhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHH
Confidence 4555444333333 6799999999999998755552 24679999999999988889999999888887432 11
Q ss_pred -----HHH---HHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814 343 -----SMV---EKTIRPCLVELTEDPDVDVRFFATQAIQSI 375 (382)
Q Consensus 343 -----~~~---~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 375 (382)
+.| ..-+-..+..+..++++++-++..+..-.+
T Consensus 182 iC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 182 ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 222 (268)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 111 122222333456778777766666554443
No 161
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=72.65 E-value=90 Score=32.03 Aligned_cols=148 Identities=12% Similarity=0.074 Sum_probs=90.0
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHH-
Q 016814 34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELA- 111 (382)
Q Consensus 34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~- 111 (382)
.+.++.+...++...++.+|..+......+-..+ +..+.++++..++....+ .+.+|- +|+..|..++...+....
T Consensus 398 f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd-~ALdvL~~L~~~~~~~l~~ 475 (1323)
T 3s4w_B 398 CPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVD-TALDVLLELIVLNASAMRL 475 (1323)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHH-HHHHHHHHHHhcCHHHHhH
Confidence 3446666677888999999999999888777766 445567788888775443 445554 488888888765433311
Q ss_pred HHhhhHhhhhhcCCCc-hHHHHHHHHHHHhhcc---ccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 016814 112 IQHILPCVKELSSDSS-QHVRSALASVIMGMAP---LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 184 (382)
Q Consensus 112 ~~~il~~l~~~~~d~~-~~vr~~a~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~ 184 (382)
...++..+...+++-+ ..+|.. ...++.++- ..+.....+++-=++++.+...+...++..+-....+...+
T Consensus 476 ~a~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~ 551 (1323)
T 3s4w_B 476 NAAFVKGILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIM 551 (1323)
T ss_dssp THHHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHH
Confidence 1123333344444433 456665 555555541 11222345677778888898888877765444433444433
No 162
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=72.50 E-value=5.7 Score=31.85 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=43.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHH----HHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC
Q 016814 77 VPAYVRLLRDNEAEVRIAAAG----KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 146 (382)
Q Consensus 77 l~~l~~~l~d~~~~VR~~a~~----~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 146 (382)
.+.+.+...|++.-+|.+++. .+..+......+...+.+++.+...+.|+...|+.++..+|..+.....
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 455566666666555556665 5555433322222345667777777788888888888888877776544
No 163
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=71.87 E-value=27 Score=25.65 Aligned_cols=98 Identities=8% Similarity=0.090 Sum_probs=65.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhH-h
Q 016814 45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAI----QHILP-C 118 (382)
Q Consensus 45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~-~ 118 (382)
+.++||..=...|..+.. .+ ....+.+..+...++. .++.+...|+..|..+.+.+|..... ..++. .
T Consensus 29 l~~~Dw~~ileicD~In~-----~~-~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~ 102 (152)
T 3rru_A 29 VQTEDWGQFMHICDIINT-----TQ-DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKEN 102 (152)
T ss_dssp CCSCCHHHHHHHHHHHHH-----ST-THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHH
Confidence 356788766666665542 11 1234567777777764 57888888999999999999876332 23444 3
Q ss_pred hhhhcCCC---chHHHHHHHHHHHhhccccChH
Q 016814 119 VKELSSDS---SQHVRSALASVIMGMAPLLGKD 148 (382)
Q Consensus 119 l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~ 148 (382)
+.+++.++ ...||..+...+..++..++.+
T Consensus 103 L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~ 135 (152)
T 3rru_A 103 LVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGG 135 (152)
T ss_dssp TGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSS
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 55555543 3479999999999999877643
No 164
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=70.02 E-value=51 Score=28.08 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=11.7
Q ss_pred HHHhhhHhhhhhcCCCch
Q 016814 111 AIQHILPCVKELSSDSSQ 128 (382)
Q Consensus 111 ~~~~il~~l~~~~~d~~~ 128 (382)
+.+.+.+.+..++.|...
T Consensus 128 i~~el~~~~~~L~~d~~G 145 (351)
T 3gvo_A 128 MVKELDGHVLKCVKDQNG 145 (351)
T ss_dssp HHGGGTTCHHHHHHSTTH
T ss_pred HHHHhhhhHHHHHHhhhh
Confidence 445566667777777655
No 165
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=69.95 E-value=50 Score=27.93 Aligned_cols=140 Identities=6% Similarity=-0.034 Sum_probs=78.0
Q ss_pred CCCchHHHHHHHHhHHHHh---hhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh-ChHHH--HhhhHHHHH
Q 016814 203 DRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPEWA--MQHITPQVL 276 (382)
Q Consensus 203 d~~~~vr~~~~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~~--~~~l~~~l~ 276 (382)
+.+.+.++.++..|..+.. .+-.++....=+..+.....+.+.+...-++.++..+..+. |.+-. ...++..+.
T Consensus 129 ~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ly 208 (339)
T 3dad_A 129 SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLY 208 (339)
T ss_dssp HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHH
Confidence 3445555556666655332 11233333333455555566667777777777777775531 11111 233555666
Q ss_pred hhhcCcchHHHHHHHHHHHHhccccChh--hhhh-----------hhHHHHHhhcc---CCCccHHHHHHHHHHHHhhhh
Q 016814 277 EMINNPHYLYRMTILRAISLLAPVMGSE--ITCS-----------RLLPVVINASK---DRVPNIKFNVAKVLQSLIPIV 340 (382)
Q Consensus 277 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~-----------~~l~~l~~~l~---d~~~~vR~~a~~~l~~i~~~~ 340 (382)
.++.+....+-..|+..+..++...... .+.. .-+..++..+. ..+.++...++..+..+....
T Consensus 209 slv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~a 288 (339)
T 3dad_A 209 TLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAAL 288 (339)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcC
Confidence 6666666677777777777766544211 1111 11345666665 556778888888888777765
Q ss_pred hH
Q 016814 341 DQ 342 (382)
Q Consensus 341 ~~ 342 (382)
+.
T Consensus 289 pd 290 (339)
T 3dad_A 289 PD 290 (339)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 166
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=68.68 E-value=65 Score=28.78 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHhChHH-HH--hhhHHHHHhhhcCcchHHHHHHHHHHHHh
Q 016814 244 VYSIRDAAANNLKRLAEEFGPEW-AM--QHITPQVLEMINNPHYLYRMTILRAISLL 297 (382)
Q Consensus 244 ~~~vr~~a~~~l~~~~~~~~~~~-~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~l 297 (382)
++.+-.-|+.-+|.+++.++... .. -..-..+++++.+++..||..|+.+++.+
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45555555566666665543311 11 11233445555555555555555555554
No 167
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=68.10 E-value=54 Score=27.62 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=11.6
Q ss_pred HHHhhhHhhhhhcCCCch
Q 016814 111 AIQHILPCVKELSSDSSQ 128 (382)
Q Consensus 111 ~~~~il~~l~~~~~d~~~ 128 (382)
+.+.+-+.+..+++|...
T Consensus 116 i~~el~~~~~~L~~d~~g 133 (333)
T 3bwt_A 116 VVDSLRPYTVQLSKDLNG 133 (333)
T ss_dssp HHHHHGGGHHHHHTSTTH
T ss_pred HHHHHHHHHHHHhcCCcc
Confidence 345566777777777654
No 168
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=66.81 E-value=13 Score=29.67 Aligned_cols=65 Identities=6% Similarity=-0.098 Sum_probs=43.5
Q ss_pred hhccCCCHHHHHHHHH----HHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 016814 43 NFSQDKSWRVRYMVAN----QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 107 (382)
Q Consensus 43 ~~~~d~~~~vR~~a~~----~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~ 107 (382)
+++.|++..+|..++. .+..+.....++.....+++.+...+.|++.-|+++...+|..+++...
T Consensus 115 ~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 115 KWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 4666666666666666 5555443433434446677777778888888888888888888877653
No 169
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=61.93 E-value=88 Score=27.94 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=42.0
Q ss_pred CccHHHHHHHHHHHHhhhhhHHH-H--HHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814 322 VPNIKFNVAKVLQSLIPIVDQSM-V--EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 322 ~~~vR~~a~~~l~~i~~~~~~~~-~--~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 377 (382)
++.+-..|+.=+|++..+++... + .-.....+-++.+++|++||..|..|++.+..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46677888888899988776432 1 12356666778899999999999999988764
No 170
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=59.88 E-value=44 Score=28.72 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=10.7
Q ss_pred HHHhhhHhhhhhcCCCch
Q 016814 111 AIQHILPCVKELSSDSSQ 128 (382)
Q Consensus 111 ~~~~il~~l~~~~~d~~~ 128 (382)
+...+.+.+..++.|+..
T Consensus 133 ii~el~~~~~~L~~d~~G 150 (369)
T 3k49_A 133 LVLELSDSVLQMIKDQNG 150 (369)
T ss_dssp HHGGGTTCHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 344556666667777654
No 171
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=59.81 E-value=97 Score=27.71 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=100.8
Q ss_pred hhhhhhhhhccCCC--HHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcCCC------cHHHHHHHHHHHHHHHHhh
Q 016814 36 HILPVIVNFSQDKS--WRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDN------EAEVRIAAAGKVTKFCRIL 106 (382)
Q Consensus 36 ~ll~~l~~~~~d~~--~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~~l~~~l~d~------~~~VR~~a~~~l~~l~~~~ 106 (382)
.+++-+....+.+. +.+-...=++.-++........ ....+++.+.+.+.++ ++.- .++.+.++...+
T Consensus 31 ~ll~~L~t~~e~~~~p~~in~Lie~~~LnL~~~t~~~~~~~~~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~ 107 (500)
T 3vld_A 31 NLLTQLENELNEDNLPEDINTLLRKCSLNLVTVVSLPDMDVKPLLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMA 107 (500)
T ss_dssp HHHHHHHHHHHTSSCCTTHHHHHHHHHHHHHHSCSCCSCCCHHHHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHS
T ss_pred HHHHHHHhhhccCCCCchhHHHHHHHhhcchhcccCCcccHHHHHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcC
Confidence 34444444433222 3444444444444554433332 3457899999988333 2332 778888888888
Q ss_pred CHHHHHHhh-hHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHH-HhhHHHHHHhhcCCChHHHHH-HHHhhHHhhhh
Q 016814 107 NPELAIQHI-LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI-EQLLPIFLSLLKDEFPDVRLN-IISKLDQVNQV 183 (382)
Q Consensus 107 ~~~~~~~~i-l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~-~~~~l~~~~~~ 183 (382)
+-+.+.+.+ +..+.+.+++.++.+-..+++.+. ..-+.+.+. ..++..+.++.-|++..+ . .+.++..+...
T Consensus 108 ~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~s~pk~lfa~t~iidiLL~lyFd~~t~i--~~vvn~IE~~~~~ 182 (500)
T 3vld_A 108 DFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE---NSQPKGLFATSNIIDILLDILFDEKVEN--DKLITAIEKALER 182 (500)
T ss_dssp CHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---TCSSGGGGTTSSHHHHHHHHHTCTTCCC--HHHHHHHHHHHHH
T ss_pred CHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---ccCchhHhccChHHHHHHHHHcCCCCCc--HHHHHHHHHHHHH
Confidence 887665432 345666777778888889998877 222333322 456677777766654433 2 33444444333
Q ss_pred hchhhH-----hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh
Q 016814 184 IGIDLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 223 (382)
Q Consensus 184 ~~~~~~-----~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 223 (382)
+..+.+ .+.-+|.+...-++.+.-+....+..+..+...+
T Consensus 183 LssdeLirrril~nnl~lL~~vK~~~~~i~~sRLLdll~il~~~i 227 (500)
T 3vld_A 183 LSTDELIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLTIEFQFI 227 (500)
T ss_dssp HTTSHHHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHHHHhccc
Confidence 333332 1345677777666666655555666665555444
No 172
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=59.07 E-value=48 Score=24.00 Aligned_cols=71 Identities=8% Similarity=0.019 Sum_probs=51.1
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814 269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 339 (382)
Q Consensus 269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 339 (382)
+.++..+.+.+....+..+..+++.+..+++++|.. .|...+.+.+.......++.+|....+.+..+-..
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 456666666666667888889999999999888865 23444555555555555678999999999888754
No 173
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=54.67 E-value=1.1e+02 Score=26.61 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHHHH--hC----CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 016814 47 DKSWRVRYMVANQLYELCEA--VG----PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 103 (382)
Q Consensus 47 d~~~~vR~~a~~~l~~l~~~--~~----~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~ 103 (382)
|++|.=-+.+.+.+..+.+. +. ........+-.+++++++++++-|......+..+-
T Consensus 140 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY 202 (392)
T 2jak_A 140 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIY 202 (392)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 45666566666666665542 11 22222346667778888888888888777776553
No 174
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=51.33 E-value=1.1e+02 Score=25.56 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHhccc-cChhh---hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHh
Q 016814 284 YLYRMTILRAISLLAPV-MGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVEL 356 (382)
Q Consensus 284 ~~~r~~a~~~l~~l~~~-~~~~~---~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l 356 (382)
+..+..+++++..+-.. .|.+. ..+.+++.+...+.+++.++|.+++..+-.++.....+ .-...++..+.++
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~i 241 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTI 241 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 44566777777665332 22221 23456666666667778888888888777766543210 1123345555554
Q ss_pred cC-CCCccHHhHHHHHHHHHH
Q 016814 357 TE-DPDVDVRFFATQAIQSID 376 (382)
Q Consensus 357 ~~-d~~~~vr~~a~~al~~~~ 376 (382)
.+ ..|.+....+..|++.+.
T Consensus 242 l~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 242 LEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HTTCCCHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHH
Confidence 43 356666666666766665
No 175
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=46.66 E-value=23 Score=30.38 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=58.6
Q ss_pred ccCCchHHHHHHHHHHHHHHhccC-hhhhh------hhhhhhhhhh----ccCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLE-PQDCV------AHILPVIVNF----SQDKSWRVRYMVANQLYELCEAVGPEPTRM 74 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~-~~~~~------~~ll~~l~~~----~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~ 74 (382)
..+..+..++.+++++..+-..-. ..... ..++..+... ....+..+|-+++..+-+++-.........
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~ 287 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 287 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCT
T ss_pred cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchH
Confidence 335578889999999888765432 21111 1122222111 123356789999998888887654322223
Q ss_pred chHHHHHHhcC---------CCcHHHHHHHHHHHHHHHH
Q 016814 75 DLVPAYVRLLR---------DNEAEVRIAAAGKVTKFCR 104 (382)
Q Consensus 75 ~ll~~l~~~l~---------d~~~~VR~~a~~~l~~l~~ 104 (382)
++++.+.+++. ..+++....++-++|.+..
T Consensus 288 el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 288 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 45555555554 2467777778888888763
No 176
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=45.17 E-value=1.5e+02 Score=25.40 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=7.0
Q ss_pred HHHhHHHHHHHhc
Q 016814 345 VEKTIRPCLVELT 357 (382)
Q Consensus 345 ~~~~i~~~l~~l~ 357 (382)
+...+.|.+..+.
T Consensus 332 l~~~i~p~l~~L~ 344 (369)
T 3k49_A 332 IVIAIRAYLDKLN 344 (369)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3345566666554
No 177
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=44.67 E-value=28 Score=30.56 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=57.9
Q ss_pred cCCchHHHHHHHHHHHHHHhccC-hhh-h-----hhhhhhhhhhh----ccCCCHHHHHHHHHHHHHHHHHhCCcccccc
Q 016814 7 SNDQDSVRLLAVEGCAALGKLLE-PQD-C-----VAHILPVIVNF----SQDKSWRVRYMVANQLYELCEAVGPEPTRMD 75 (382)
Q Consensus 7 ~d~~~~vR~~a~~~l~~l~~~~~-~~~-~-----~~~ll~~l~~~----~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 75 (382)
.+..+..++.+++++..+-..-. ... . ...++..+... ....+..+|.+++..+-+++-.........+
T Consensus 272 ~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~e 351 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLE 351 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCTT
T ss_pred CCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHH
Confidence 35578889999998888765432 111 1 11122222111 1233567899999998888876543222234
Q ss_pred hHHHHHHhcC---------CCcHHHHHHHHHHHHHHHH
Q 016814 76 LVPAYVRLLR---------DNEAEVRIAAAGKVTKFCR 104 (382)
Q Consensus 76 ll~~l~~~l~---------d~~~~VR~~a~~~l~~l~~ 104 (382)
+++.+.+++. ..+++....++-++|.+..
T Consensus 352 l~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 352 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 5555555554 2366777778888888763
No 178
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=44.51 E-value=74 Score=25.66 Aligned_cols=98 Identities=11% Similarity=0.060 Sum_probs=55.4
Q ss_pred ccCCchHHHHHHHHHHHHHHhccC-hh-hh-----hhhhhhhhhhhccC----CCHHHHHHHHHHHHHHHHHhCCccccc
Q 016814 6 QSNDQDSVRLLAVEGCAALGKLLE-PQ-DC-----VAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPEPTRM 74 (382)
Q Consensus 6 ~~d~~~~vR~~a~~~l~~l~~~~~-~~-~~-----~~~ll~~l~~~~~d----~~~~vR~~a~~~l~~l~~~~~~~~~~~ 74 (382)
..+..+..+..+++++..+-.+-. .. -. ...++..+.....| ++..+|-+++..+-+++-.........
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~ 178 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 178 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCT
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchH
Confidence 334567889999998888766433 21 11 11222222222222 366789899988888887655432223
Q ss_pred chHHHHHHhcCC---------CcHHHHHHHHHHHHHHH
Q 016814 75 DLVPAYVRLLRD---------NEAEVRIAAAGKVTKFC 103 (382)
Q Consensus 75 ~ll~~l~~~l~d---------~~~~VR~~a~~~l~~l~ 103 (382)
++...+.+++.. .+++....++.++|.+.
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~ 216 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 216 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHH
Confidence 344444443331 24566666777777775
No 179
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=44.11 E-value=82 Score=22.77 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh------hhhhhh---HHHHHhh
Q 016814 247 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE------ITCSRL---LPVVINA 317 (382)
Q Consensus 247 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~------~~~~~~---l~~l~~~ 317 (382)
+-...+..|..++...-. ..+.++..+.+.+....+..|..+++.+-.++++.+.+ .|...+ ++.++..
T Consensus 21 ~S~~~I~~LT~~a~~~~~--~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~ 98 (145)
T 3d9j_A 21 ISKAKMTQITKAAIKAIK--FYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQN 98 (145)
T ss_dssp CCHHHHHHHHHHHHHTGG--GHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHH
Confidence 334445555555543211 22445555656565556677788888888887776642 232222 2222222
Q ss_pred ccCCCccHHHHHHHHHHHHhh
Q 016814 318 SKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 318 l~d~~~~vR~~a~~~l~~i~~ 338 (382)
.....+..|....+.+..+-+
T Consensus 99 ~~~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 99 LYRCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp HTSSCGGGHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhcC
Confidence 223448899998888888853
No 180
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=41.35 E-value=85 Score=22.16 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=16.3
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814 268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPV 300 (382)
Q Consensus 268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 300 (382)
.+.++..+.+.+.......|...++.+..+..+
T Consensus 37 a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~n 69 (135)
T 4fu3_A 37 AGPIVSVWHRELRKAKSNRKLTFLYLANDVIQN 69 (135)
T ss_dssp HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 344555555555444444455555555555443
No 181
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=40.59 E-value=2.3e+02 Score=26.30 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH----------HHhhhHHHHHh-hhcCcchHHHHHHHHHHHHh
Q 016814 229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----------AMQHITPQVLE-MINNPHYLYRMTILRAISLL 297 (382)
Q Consensus 229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----------~~~~l~~~l~~-~l~~~~~~~r~~a~~~l~~l 297 (382)
.+.-++++..+++++...+...++..+..+....+... +.. +.-.+.. +...++...|..|...++.+
T Consensus 315 f~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~-~~q~L~~v~~~~P~~~lR~~a~~vl~~~ 393 (596)
T 4f52_E 315 LQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLT-VPQGLVKVMTLCPIETLRKKSLAMLQLY 393 (596)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHH-HHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 34456677788898888888888888888887665421 111 1111212 23468889999999999999
Q ss_pred ccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814 298 APVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 336 (382)
Q Consensus 298 ~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i 336 (382)
...++.+ ..-.++..++... ..+.++..++..+..-
T Consensus 394 I~~~~~e-~R~~iL~~LL~~~--~~~~v~~~lI~~~Kde 429 (596)
T 4f52_E 394 INKLDSQ-GKYTLFRCLLNTS--NHSGVEAFIIQNIKNQ 429 (596)
T ss_dssp HHHBCHH-HHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred HHhCChH-HHHHHHHHHHhcC--CChHHHHHHHHHHHHH
Confidence 9888865 4556666666644 3477888888777543
No 182
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=40.23 E-value=1.7e+02 Score=24.75 Aligned_cols=102 Identities=11% Similarity=0.066 Sum_probs=64.8
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHH---hhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc-ChHhH--HHhhH
Q 016814 82 RLLRDNEAEVRIAAAGKVTKFCR---ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKDAT--IEQLL 155 (382)
Q Consensus 82 ~~l~d~~~~VR~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~~~--~~~l~ 155 (382)
+-+.+.+...+..++..|..+.. .+-.+.+...=+..+.....+.+.....-+..++..+.... |-+.. .+.++
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI 204 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTI 204 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHH
Confidence 33344556666677777776332 23344444444566777777778888888888888887653 22111 25567
Q ss_pred HHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814 156 PIFLSLLKDEFPDVRLNIISKLDQVNQV 183 (382)
Q Consensus 156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~ 183 (382)
..+..+++.....|-+.+++.+..++.+
T Consensus 205 ~~lyslv~s~~~~V~k~AL~LL~v~V~~ 232 (339)
T 3dad_A 205 QWLYTLCASLSRLVVKTALKLLLVFVEY 232 (339)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHcc
Confidence 7777777777777777777777776654
No 183
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=35.16 E-value=1.3e+02 Score=21.77 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=39.9
Q ss_pred HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHh
Q 016814 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 221 (382)
Q Consensus 152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~ 221 (382)
+.++..+.+.+....+.-+..++-.+..+++..|.+ .|...+.+.+......-+..+|..+.+.+...-+
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 455566666665556677777766666666665542 2223344444444444455666666666666553
No 184
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=34.75 E-value=2e+02 Score=23.91 Aligned_cols=97 Identities=6% Similarity=0.038 Sum_probs=56.5
Q ss_pred CCchHHHHHHHHHHHHHHhccCh-h---hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHH
Q 016814 8 NDQDSVRLLAVEGCAALGKLLEP-Q---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAY 80 (382)
Q Consensus 8 d~~~~vR~~a~~~l~~l~~~~~~-~---~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l 80 (382)
+..|..+..+++++..+-..-.. + ...+.+++.+.....+++..+|.+++..+-+++-...... ....++..+
T Consensus 159 ~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l 238 (304)
T 3ebb_A 159 KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI 238 (304)
T ss_dssp TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 34566677777777776553221 1 1223455666666667788888888888888876543211 112244444
Q ss_pred HHhcCC-CcHHHHHHHHHHHHHHHH
Q 016814 81 VRLLRD-NEAEVRIAAAGKVTKFCR 104 (382)
Q Consensus 81 ~~~l~d-~~~~VR~~a~~~l~~l~~ 104 (382)
.+.+.. ++.+....++.++|.+..
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHh
Confidence 444432 356666667777777764
No 185
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=32.41 E-value=72 Score=22.54 Aligned_cols=31 Identities=3% Similarity=-0.097 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260 (382)
Q Consensus 230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 260 (382)
+.++..+.+.+.....+-|...+..+..++.
T Consensus 38 ~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ 68 (135)
T 4fu3_A 38 GPIVSVWHRELRKAKSNRKLTFLYLANDVIQ 68 (135)
T ss_dssp HHHHHHHHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 4555555555544444444444444444443
No 186
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=30.49 E-value=39 Score=17.62 Aligned_cols=26 Identities=8% Similarity=0.150 Sum_probs=20.4
Q ss_pred hhhhhhhhhccCCCHHHHHHHHHHHH
Q 016814 36 HILPVIVNFSQDKSWRVRYMVANQLY 61 (382)
Q Consensus 36 ~ll~~l~~~~~d~~~~vR~~a~~~l~ 61 (382)
.+..++.++..+.++..|++..+.+.
T Consensus 7 ~l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 7 GLMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp SHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 46677788888888889988887753
No 187
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=30.01 E-value=1.4e+02 Score=20.86 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=52.4
Q ss_pred hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhh---hhhHHH
Q 016814 240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITC---SRLLPV 313 (382)
Q Consensus 240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~---~~~l~~ 313 (382)
|+.....+...+..++... ...+.++..+.+.+.......|...++.+..+.++.+.. .|. ..++|.
T Consensus 17 L~~s~~sI~~~s~w~l~h~-------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~ 89 (132)
T 4flb_A 17 VTNTMESIQGLSSWCIENK-------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPE 89 (132)
T ss_dssp CCSSHHHHHHHHHHHHHTG-------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHH
T ss_pred CcccHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Confidence 4555555555554444321 112446666666666666778888888888888766432 233 344454
Q ss_pred HHhhccCCCccHHHHHHHHHHHHhh
Q 016814 314 VINASKDRVPNIKFNVAKVLQSLIP 338 (382)
Q Consensus 314 l~~~l~d~~~~vR~~a~~~l~~i~~ 338 (382)
.+....+ +..|....+.+..+-+
T Consensus 90 ~~~~~~~--~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 90 AAALVKD--PSVSKSVERIFKIWED 112 (132)
T ss_dssp HHHTTCS--TTTHHHHHHHHHHHHH
T ss_pred HHHHhCC--HHHHHHHHHHHHHhcc
Confidence 4444443 5677777777776643
No 188
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=26.88 E-value=1.6e+02 Score=20.54 Aligned_cols=99 Identities=9% Similarity=0.002 Sum_probs=57.8
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH---HHHHH
Q 016814 271 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEK 347 (382)
Q Consensus 271 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~ 347 (382)
-+...+..++++...+.....+++...- ..+.++..+.+.+....++-|...+..+..+....+. ..+..
T Consensus 9 ~l~~~L~~L~~s~~sI~~~s~w~l~h~~-------~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~ 81 (132)
T 4flb_A 9 SLDRKFQSVTNTMESIQGLSSWCIENKK-------HHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRE 81 (132)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHTGG-------GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHH
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHH
Confidence 3344445566666777777777775532 3345566666666666778888888888888776532 22333
Q ss_pred hHHHHHHHhcCC-CCccHHhHHHHHHHHHH
Q 016814 348 TIRPCLVELTED-PDVDVRFFATQAIQSID 376 (382)
Q Consensus 348 ~i~~~l~~l~~d-~~~~vr~~a~~al~~~~ 376 (382)
.+.+.+...... .+++.|....+.+..+-
T Consensus 82 ~f~~~l~~~~~~~~~~~~~~kl~~ll~iW~ 111 (132)
T 4flb_A 82 SFADVLPEAAALVKDPSVSKSVERIFKIWE 111 (132)
T ss_dssp HHHTTHHHHHHTTCSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 333333332211 24556766666666554
No 189
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.02 E-value=2e+02 Score=21.25 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=46.6
Q ss_pred ChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH-hhC
Q 016814 29 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR-ILN 107 (382)
Q Consensus 29 ~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~-~~~ 107 (382)
+.+++...+.+++.++....|. ..++.++..+. ...+...++..++...-|.+..-|+.+...|..+.. .++
T Consensus 5 s~ee~~kk~~~ii~EYf~~~D~---~Ea~~~l~eL~----~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls 77 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEYFEHGDT---NEVAEMLRDLN----LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMS 77 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHT----CSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhC----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCC
Confidence 4455666677777777665543 44555555433 222455667777766667777778888887777643 234
Q ss_pred HHHHHH
Q 016814 108 PELAIQ 113 (382)
Q Consensus 108 ~~~~~~ 113 (382)
.+.+.+
T Consensus 78 ~~~i~~ 83 (165)
T 2rg8_A 78 TTDVEK 83 (165)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 190
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.99 E-value=2.8e+02 Score=23.75 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=52.5
Q ss_pred ChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH--hh
Q 016814 29 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR--IL 106 (382)
Q Consensus 29 ~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~--~~ 106 (382)
+++.....+-+++.++....|. ..+++++..+. .++.+...++..++...-|.+..-|+.+...|..+.. .+
T Consensus 7 ~~~~~~k~~~~ii~EY~~~~D~---~Ea~~~l~eL~---~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 7 SKEELLKLTETVVTEYLNSGNA---NEAVNGVREMR---APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHT---CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHhC---CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 3455556667777888776665 56666666543 1222334555555555556778889999999998876 45
Q ss_pred CHHHHHHhhhH
Q 016814 107 NPELAIQHILP 117 (382)
Q Consensus 107 ~~~~~~~~il~ 117 (382)
+.+.+...+..
T Consensus 81 s~~~~~~Gf~~ 91 (364)
T 3l6a_A 81 TSDNFMQAFLN 91 (364)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66665544433
No 191
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=21.31 E-value=34 Score=29.33 Aligned_cols=99 Identities=10% Similarity=0.153 Sum_probs=47.6
Q ss_pred hcCcchHHHHHHHHHHHHhccc-c-Chhhh-----hhhhHHHHHhhc----cCCCccHHHHHHHHHHHHhhhhhHHHHHH
Q 016814 279 INNPHYLYRMTILRAISLLAPV-M-GSEIT-----CSRLLPVVINAS----KDRVPNIKFNVAKVLQSLIPIVDQSMVEK 347 (382)
Q Consensus 279 l~~~~~~~r~~a~~~l~~l~~~-~-~~~~~-----~~~~l~~l~~~l----~d~~~~vR~~a~~~l~~i~~~~~~~~~~~ 347 (382)
+.+..+..+..+++++..+-.. . |.... ...++..+...+ .+.+.++|.+++..+-.++..........
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~ 287 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 287 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCT
T ss_pred cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchH
Confidence 3345677778888887776432 2 22211 122222222222 12245677777776666654432211001
Q ss_pred hHHHHHHHhcC---------CCCccHHhHHHHHHHHHHH
Q 016814 348 TIRPCLVELTE---------DPDVDVRFFATQAIQSIDH 377 (382)
Q Consensus 348 ~i~~~l~~l~~---------d~~~~vr~~a~~al~~~~~ 377 (382)
.+.+.+..++. ..+.+....+.-|++.+..
T Consensus 288 el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 288 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 22223333222 2366777777777777663
No 192
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.46 E-value=2.6e+02 Score=20.59 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc-cCh
Q 016814 225 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV-MGS 303 (382)
Q Consensus 225 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~-~~~ 303 (382)
.+.+.+...+++..++...+. ..++.++..+. ...+...++..+++.--|.+...|+.+...+..+... +..
T Consensus 6 ~ee~~kk~~~ii~EYf~~~D~---~Ea~~~l~eL~----~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls~ 78 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHGDT---NEVAEMLRDLN----LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMST 78 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHT----CSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBCH
T ss_pred HHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhC----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCH
Confidence 344555666666666655443 33444444432 2224555666766666677888899999999988542 333
Q ss_pred hhhh---hhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814 304 EITC---SRLLPVVINASKDRVPNIKFNVAKVLQSL 336 (382)
Q Consensus 304 ~~~~---~~~l~~l~~~l~d~~~~vR~~a~~~l~~i 336 (382)
+.+. ..++..+-...-| .|.+-....+.++..
T Consensus 79 ~~i~~Gf~~lle~ldDl~iD-iP~a~~~la~fiara 113 (165)
T 2rg8_A 79 TDVEKSFDKLLKDLPELALD-TPRAPQLVGQFIARA 113 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhccc-ccchHHHHHHHHHHH
Confidence 3332 2222222222223 455555444444443
Done!