Your job contains 1 sequence.
>016815
MRKRKGSKAVHDPETLISKSKTLDPVKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFK
GHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHP
MESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLP
EHMKVQVRSMDELPCYTERDESLLGDEDSLGDEDYNEASENSGSLEETCGDVTINFSSDY
SFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLLSSLETTAPIISSTSAEETNE
LGRQRSEQFATAVNDEENQQLAWRQSITVEVANKDQQQVQSSTGLPNVEVVDLLTPSPNC
REMSYSKKRRVSGLYPVIIDLT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016815
(382 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065775 - symbol:AT2G30350 species:3702 "Arabi... 710 4.3e-70 1
MGI|MGI:1915220 - symbol:Slx1b "SLX1 structure-specific e... 310 1.0e-27 1
RGD|1311568 - symbol:Slx1b "SLX1 structure-specific endon... 307 2.2e-27 1
UNIPROTKB|Q32PI0 - symbol:SLX1A "Structure-specific endon... 300 1.2e-26 1
UNIPROTKB|Q9BQ83 - symbol:SLX1A "Structure-specific endon... 282 9.7e-25 1
FB|FBgn0037263 - symbol:slx1 "nuclease slx1" species:7227... 270 1.8e-23 1
SGD|S000000432 - symbol:SLX1 "Endonuclease involved in DN... 227 8.0e-19 1
POMBASE|SPAP27G11.15 - symbol:slx1 "structure-specific en... 224 1.8e-18 1
CGD|CAL0003774 - symbol:orf19.972 species:5476 "Candida a... 223 2.4e-18 1
WB|WBGene00018909 - symbol:slx-1 species:6239 "Caenorhabd... 229 6.0e-17 1
ASPGD|ASPL0000015291 - symbol:AN8212 species:162425 "Emer... 197 3.4e-13 1
TAIR|locus:2169273 - symbol:AT5G43210 species:3702 "Arabi... 128 1.1e-07 1
>TAIR|locus:2065775 [details] [associations]
symbol:AT2G30350 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA;ISS]
InterPro:IPR000305 Pfam:PF01541 EMBL:CP002685
GenomeReviews:CT485783_GR SMART:SM00465 KO:K15078 eggNOG:NOG296745
EMBL:BT023449 EMBL:AK175389 EMBL:AK175393 EMBL:AK176607
IPI:IPI00530173 RefSeq:NP_180594.2 UniGene:At.12243
ProteinModelPortal:Q682H4 SMR:Q682H4 IntAct:Q682H4
EnsemblPlants:AT2G30350.2 GeneID:817585 KEGG:ath:AT2G30350
TAIR:At2g30350 HOGENOM:HOG000242211 InParanoid:Q682H4 OMA:GAWRTKK
PhylomeDB:Q682H4 ProtClustDB:CLSN2681180 Genevestigator:Q682H4
Uniprot:Q682H4
Length = 368
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 169/353 (47%), Positives = 208/353 (58%)
Query: 45 GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGF 104
GFFACYLLTSL PR KG TYIGFTVNPRRRIRQHNGEI GA RTKK+RPWEMVLCIYGF
Sbjct: 26 GFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGF 85
Query: 105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
PTNVSALQFEWAWQHP ES+AVR+AAA FKSFSGVA+KIKL +TMLNLP W SLN+ VNY
Sbjct: 86 PTNVSALQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNY 145
Query: 165 FSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYT---ERXXXXXXXXXXXXXXXYNEASEN 221
FS+KY+ H PSLP HMKVQV +M++L +T + ++ ++
Sbjct: 146 FSSKYAHHGGKSPSLPLHMKVQVCAMEDLQYFTKVDDSSQPEDEESPEVNEEDDDDDDDD 205
Query: 222 SGSLEETCGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLLS 281
S +L + G+ + S D F E A E F +E+ R ++ FGLL
Sbjct: 206 SSNLSQP-GNSNTSSSDDRHF---EKAKEPVTVF----DEEDRLANF------SGFGLLD 251
Query: 282 SLETTAPIISSTSA-------EETNELGRQRSEQFAT-----AVNDEENQQLAWRQSITV 329
ET +S + +E + R F V DE +
Sbjct: 252 EEETVEDEVSHITVGSIRATEKEPETVFNDRLASFTCFGLVEIVEDEVSHGTIGSTEAME 311
Query: 330 EVANKDQQQVQSSTGLPNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVIIDLT 382
+ K + + S+T +VEV+DL+TPSP+CR S K+RRVS IDLT
Sbjct: 312 KECRKRRNHITSTTTEVDVEVIDLMTPSPSCRAGSSMKRRRVSEF----IDLT 360
>MGI|MGI:1915220 [details] [associations]
symbol:Slx1b "SLX1 structure-specific endonuclease subunit
homolog B (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008821 "crossover
junction endodeoxyribonuclease activity" evidence=ISO] [GO:0010792
"DNA double-strand break processing involved in repair via
single-strand annealing" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISO] [GO:0033557 "Slx1-Slx4 complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000305
MGI:MGI:1915220 Pfam:PF01541 GO:GO:0005634 GO:GO:0046872
GO:GO:0006281 GO:GO:0006310 GO:GO:0090305 GO:GO:0004519
SMART:SM00465 PROSITE:PS50164 KO:K15078 eggNOG:NOG296745
GeneTree:ENSGT00390000013368 HOGENOM:HOG000008012 OMA:GRIYIGF
OrthoDB:EOG4Z62P9 HAMAP:MF_03100 HSSP:Q9KGL3 CTD:79008
EMBL:AK014753 EMBL:AK049139 EMBL:BC145688 IPI:IPI00226433
IPI:IPI00556913 RefSeq:NP_083696.2 UniGene:Mm.280573
ProteinModelPortal:Q8BX32 SMR:Q8BX32 STRING:Q8BX32 PRIDE:Q8BX32
Ensembl:ENSMUST00000144897 GeneID:75764 KEGG:mmu:75764
UCSC:uc009jsh.2 InParanoid:Q8BX32 NextBio:343884 Bgee:Q8BX32
Genevestigator:Q8BX32 Uniprot:Q8BX32
Length = 270
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 61/141 (43%), Positives = 84/141 (59%)
Query: 46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGF 104
FF YLL PR +G Y+GFTVNP RR+RQHN G + GA RT R PW+MVL I+GF
Sbjct: 10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGF 69
Query: 105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
P+ V+AL+FEWAWQHP S + +S + A +++ ML +P W L + + +
Sbjct: 70 PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRW 129
Query: 165 FSTKYSKHSSSCPSLPEHMKV 185
+ +H CP+ P HM +
Sbjct: 130 LRPDF-RHEL-CPAPPAHMPI 148
>RGD|1311568 [details] [associations]
symbol:Slx1b "SLX1 structure-specific endonuclease subunit
homolog B (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA;ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008821 "crossover junction endodeoxyribonuclease
activity" evidence=ISO] [GO:0010792 "DNA double-strand break
processing involved in repair via single-strand annealing"
evidence=ISO] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISO] [GO:0033557 "Slx1-Slx4 complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000305
RGD:1311568 Pfam:PF01541 GO:GO:0005634 GO:GO:0046872 GO:GO:0006281
GO:GO:0006310 GO:GO:0090305 GO:GO:0004519 SMART:SM00465
PROSITE:PS50164 KO:K15078 eggNOG:NOG296745
GeneTree:ENSGT00390000013368 HOGENOM:HOG000008012 OMA:GRIYIGF
HAMAP:MF_03100 HSSP:Q9KGL3 CTD:79008 EMBL:BC087090 IPI:IPI00515761
RefSeq:NP_001009292.1 UniGene:Rn.30339 ProteinModelPortal:Q5PQP5
STRING:Q5PQP5 Ensembl:ENSRNOT00000026231 GeneID:293489
KEGG:rno:293489 UCSC:RGD:1311568 InParanoid:Q5PQP5 NextBio:636218
ArrayExpress:Q5PQP5 Genevestigator:Q5PQP5 Uniprot:Q5PQP5
Length = 271
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 60/141 (42%), Positives = 83/141 (58%)
Query: 46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGF 104
FF YLL PR +G Y+GFTVNP RR+RQHN G + GA RT R PW+MVL ++GF
Sbjct: 10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGF 69
Query: 105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
P+ V+AL+FEWAWQHP S + +S + +++ ML +P W L + V +
Sbjct: 70 PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRW 129
Query: 165 FSTKYSKHSSSCPSLPEHMKV 185
+ +H CP+ P HM +
Sbjct: 130 LRPDF-RHEL-CPAPPPHMPI 148
>UNIPROTKB|Q32PI0 [details] [associations]
symbol:SLX1A "Structure-specific endonuclease subunit SLX1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR000305 Pfam:PF01541 GO:GO:0005634 GO:GO:0046872
GO:GO:0006281 GO:GO:0006310 GO:GO:0090305 GO:GO:0004519
SMART:SM00465 PROSITE:PS50164 KO:K15078 EMBL:BC108108
IPI:IPI00698447 RefSeq:NP_001032533.1 UniGene:Bt.62766
ProteinModelPortal:Q32PI0 STRING:Q32PI0 PRIDE:Q32PI0
Ensembl:ENSBTAT00000011384 GeneID:510858 KEGG:bta:510858 CTD:548593
eggNOG:NOG296745 GeneTree:ENSGT00390000013368 HOGENOM:HOG000008012
InParanoid:Q32PI0 OMA:GRIYIGF OrthoDB:EOG4Z62P9 NextBio:20869653
HAMAP:MF_03100 Uniprot:Q32PI0
Length = 267
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 59/139 (42%), Positives = 80/139 (57%)
Query: 46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGF 104
FF YLL L PR +G Y+GFTVNP RR++QHNG + GA RT R PWEMVL ++GF
Sbjct: 6 FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGF 65
Query: 105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
P+ V+AL+FEWAWQHP S + + + A +++ ML P W L + + +
Sbjct: 66 PSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRW 125
Query: 165 FSTKYSKHSSSCPSLPEHM 183
+ + CP P HM
Sbjct: 126 LRADFRQ--DLCPPPPPHM 142
>UNIPROTKB|Q9BQ83 [details] [associations]
symbol:SLX1A "Structure-specific endonuclease subunit SLX1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] [GO:0008821 "crossover junction endodeoxyribonuclease
activity" evidence=IDA] [GO:0010792 "DNA double-strand break
processing involved in repair via single-strand annealing"
evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0033557 "Slx1-Slx4 complex"
evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR000305
Pfam:PF01541 GO:GO:0046872 GO:GO:0000724 GO:GO:0017108
GO:GO:0008821 PROSITE:PS50164 GO:GO:0010792 KO:K15078 CTD:548593
eggNOG:NOG296745 HOGENOM:HOG000008012 OMA:GRIYIGF OrthoDB:EOG4Z62P9
HAMAP:MF_03100 HSSP:Q9KGL3 GO:GO:0033557 EMBL:AC106782
EMBL:AC133555 EMBL:BC000754 EMBL:BC000803 EMBL:BC015990
EMBL:BC019306 EMBL:BC069007 EMBL:BC130545 EMBL:BC130547
EMBL:BC144462 IPI:IPI00031535 IPI:IPI00376968 RefSeq:NP_001014999.1
RefSeq:NP_001015000.1 RefSeq:NP_076949.1 RefSeq:NP_835145.1
UniGene:Hs.728161 UniGene:Hs.729791 ProteinModelPortal:Q9BQ83
SMR:Q9BQ83 IntAct:Q9BQ83 STRING:Q9BQ83 PRIDE:Q9BQ83 DNASU:548593
DNASU:79008 Ensembl:ENST00000251303 Ensembl:ENST00000330181
Ensembl:ENST00000345535 Ensembl:ENST00000351581 GeneID:548593
GeneID:79008 KEGG:hsa:548593 KEGG:hsa:79008 UCSC:uc002dsx.3
UCSC:uc002dsy.3 CTD:79008 GeneCards:GC16P029471
GeneCards:GC16P030208 HGNC:HGNC:20922 HGNC:HGNC:28748 HPA:HPA047038
neXtProt:NX_Q9BQ83 PharmGKB:PA142671738 InParanoid:Q9BQ83
NextBio:112282 ArrayExpress:Q9BQ83 Bgee:Q9BQ83
Genevestigator:Q9BQ83 Uniprot:Q9BQ83
Length = 275
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 56/139 (40%), Positives = 79/139 (56%)
Query: 46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGF 104
FF YLL L PR++G Y+GFTVN RR++QHNG + GA RT R PWEMVL ++GF
Sbjct: 13 FFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGF 72
Query: 105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
P++V+AL+FEWAWQHP S + + + A +++ ML P W L + + +
Sbjct: 73 PSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRW 132
Query: 165 FSTKYSKHSSSCPSLPEHM 183
+ C P H+
Sbjct: 133 --VRPDLRQDLCLPPPPHV 149
>FB|FBgn0037263 [details] [associations]
symbol:slx1 "nuclease slx1" species:7227 "Drosophila
melanogaster" [GO:0033557 "Slx1-Slx4 complex" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007095 "mitotic G2
DNA damage checkpoint" evidence=IMP] InterPro:IPR000305
Pfam:PF01541 EMBL:AE014297 GO:GO:0007095 GO:GO:0046872
GO:GO:0006281 GO:GO:0006310 GO:GO:0090305 GO:GO:0004519
SMART:SM00465 PROSITE:PS50164 KO:K15078 UniGene:Dm.1060
eggNOG:NOG296745 GeneTree:ENSGT00390000013368 OMA:GRIYIGF
HAMAP:MF_03100 EMBL:BT029079 RefSeq:NP_649484.3
ProteinModelPortal:Q9VN41 SMR:Q9VN41 IntAct:Q9VN41 MINT:MINT-285941
STRING:Q9VN41 EnsemblMetazoa:FBtr0301296 GeneID:40578
KEGG:dme:Dmel_CG18271 UCSC:CG18271-RA CTD:40578 FlyBase:FBgn0037263
InParanoid:Q9VN41 OrthoDB:EOG4G4F6C PhylomeDB:Q9VN41
GenomeRNAi:40578 NextBio:819482 Bgee:Q9VN41 GO:GO:0033557
Uniprot:Q9VN41
Length = 297
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 58/148 (39%), Positives = 83/148 (56%)
Query: 46 FFACYLLTS--LCPRFKGHTYIGFTVNPRRRIRQHNGEIRC---GAVRTKKRRPWEMVLC 100
F+ YLL S L PR++G Y+GFTVNP+RRIRQHN + C GA +T ++ PW MV+
Sbjct: 23 FYGVYLLCSQSLDPRYRGKCYVGFTVNPKRRIRQHN--LGCDFGGARKTSRKGPWLMVMI 80
Query: 101 IYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVA---NKIKLAFTMLNLPNWES 157
++GFP N ALQFEWAWQ P S ++ + ++ ML + W
Sbjct: 81 VHGFPNNTVALQFEWAWQQPSLSTRLKMYPELKRKLPRETFFDYNFRILSNMLGVGPWNR 140
Query: 158 LNIKVNYFSTKYSKHSSSCPSLPEHMKV 185
L + V + T Y + S +LP+HM++
Sbjct: 141 LPLTVRWLETDYERPFSK--ALPKHMEI 166
>SGD|S000000432 [details] [associations]
symbol:SLX1 "Endonuclease involved in DNA recombination and
repair" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IC] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0006261
"DNA-dependent DNA replication" evidence=IGI] [GO:0033557
"Slx1-Slx4 complex" evidence=IPI] InterPro:IPR000305 SGD:S000000432
Pfam:PF01541 GO:GO:0046872 GO:GO:0006281 EMBL:BK006936
GO:GO:0006261 GO:GO:0006310 GO:GO:0017108 SMART:SM00465
PROSITE:PS50164 RefSeq:NP_009787.3 GeneID:852529 KEGG:sce:YBR228W
KO:K15078 eggNOG:NOG296745 GeneTree:ENSGT00390000013368
HAMAP:MF_03100 GO:GO:0033557 OrthoDB:EOG46DQCD EMBL:Z36097
PIR:S46104 RefSeq:NP_009790.3 ProteinModelPortal:P38324 SMR:P38324
DIP:DIP-1770N IntAct:P38324 MINT:MINT-402886 STRING:P38324
EnsemblFungi:YBR228W GeneID:852532 KEGG:sce:YBR231C CYGD:YBR228w
HOGENOM:HOG000248775 OMA:CYLLQSI NextBio:971577
Genevestigator:P38324 GermOnline:YBR228W Uniprot:P38324
Length = 304
Score = 227 (85.0 bits), Expect = 8.0e-19, P = 8.0e-19
Identities = 50/129 (38%), Positives = 77/129 (59%)
Query: 46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIY 102
F+ CYLL S+ R Y+G T NP RR+RQHNG++ G A RTK+ RPWEM++ +
Sbjct: 13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVR 70
Query: 103 GFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSG---VANKIKLAFTMLNLPNWESLN 159
GFP+ ++ALQFE AWQH ++ + + K +G + +K+ L +L ++ +N
Sbjct: 71 GFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMN 130
Query: 160 IKVNYFSTK 168
+ V F+ K
Sbjct: 131 LIVEVFNIK 139
>POMBASE|SPAP27G11.15 [details] [associations]
symbol:slx1 "structure-specific endonuclease catalytic
subunit" species:4896 "Schizosaccharomyces pombe" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016894 "endonuclease activity, active with either ribo- or
deoxyribonucleic acids and producing 3'-phosphomonoesters"
evidence=IDA] [GO:0030874 "nucleolar chromatin" evidence=IDA]
[GO:0030875 "rDNA protrusion" evidence=NAS] [GO:0033557 "Slx1-Slx4
complex" evidence=IDA] [GO:0034065 "replication fork processing at
rDNA locus" evidence=TAS] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0045458 "recombination within rDNA repeats"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000305 PomBase:SPAP27G11.15 Pfam:PF01541 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0000724
SUPFAM:SSF82771 PROSITE:PS50164 KO:K15078 GO:GO:0034065
GO:GO:0030875 eggNOG:NOG296745 OMA:GRIYIGF HAMAP:MF_03100
GO:GO:0033557 OrthoDB:EOG46DQCD RefSeq:NP_593420.1
ProteinModelPortal:Q9P7M3 STRING:Q9P7M3 EnsemblFungi:SPAP27G11.15.1
GeneID:2541657 KEGG:spo:SPAP27G11.15 NextBio:20802750 GO:GO:0016894
GO:GO:0045458 Uniprot:Q9P7M3
Length = 271
Score = 224 (83.9 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 48/127 (37%), Positives = 68/127 (53%)
Query: 46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFP 105
F+ CYLL S + G YIG T +P RR+RQHNGEI GA +TK RPW + +YGFP
Sbjct: 6 FYCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFP 65
Query: 106 TNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYF 165
VSAL+FEW WQ+ S + K + +K +++ W + + +
Sbjct: 66 NKVSALKFEWNWQNLGISRYTKDCDFRSKKQKTIMYCLKGLKHLVDSDTWRRWPLNITFL 125
Query: 166 S-TKYSK 171
+ T +SK
Sbjct: 126 NKTAFSK 132
>CGD|CAL0003774 [details] [associations]
symbol:orf19.972 species:5476 "Candida albicans" [GO:0033557
"Slx1-Slx4 complex" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] InterPro:IPR000305 CGD:CAL0003774
Pfam:PF01541 EMBL:AACQ01000063 EMBL:AACQ01000062 SUPFAM:SSF82771
KO:K15078 eggNOG:NOG296745 HOGENOM:HOG000248775 RefSeq:XP_716810.1
RefSeq:XP_716870.1 ProteinModelPortal:Q5A4X4 STRING:Q5A4X4
GeneID:3641500 GeneID:3641564 KEGG:cal:CaO19.8587
KEGG:cal:CaO19.972 Uniprot:Q5A4X4
Length = 286
Score = 223 (83.6 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 54/144 (37%), Positives = 85/144 (59%)
Query: 46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIY 102
F+ Y+L S+ P+ + TYIG T +P+RR+RQHNG+++ G A RTKK RPW MV+ +Y
Sbjct: 16 FYGVYILKSI-PKPRS-TYIGSTPDPKRRLRQHNGDLKVGGAYRTKKDGSRPWNMVVLVY 73
Query: 103 GFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKV 162
GFP+ ++ALQFE + QH ++ + A S + KLA L +++ +++K+
Sbjct: 74 GFPSRIAALQFEHSLQHAYQTRHIDNDARITSSSRQSSIHSKLANIRLLTTSFDKMSLKI 133
Query: 163 NYFSTK-Y-----SKHSSSCPSLP 180
F + Y +KH C S+P
Sbjct: 134 AIFDEEVYRMWIENKHKIEC-SVP 156
>WB|WBGene00018909 [details] [associations]
symbol:slx-1 species:6239 "Caenorhabditis elegans"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR001965
SMART:SM00184 SMART:SM00249 InterPro:IPR000305 Pfam:PF01541
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0046872 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
GO:GO:0090305 GO:GO:0004519 SMART:SM00465 PROSITE:PS50164 KO:K15078
eggNOG:NOG296745 GeneTree:ENSGT00390000013368 HAMAP:MF_03100
EMBL:FO080752 PIR:T29147 RefSeq:NP_491541.1 HSSP:Q9KGL3
ProteinModelPortal:P91351 SMR:P91351 STRING:P91351 PaxDb:P91351
EnsemblMetazoa:F56A3.2 GeneID:172157 KEGG:cel:CELE_F56A3.2
UCSC:F56A3.2 CTD:172157 WormBase:F56A3.2 InParanoid:P91351
OMA:SHFHSKC NextBio:874259 Uniprot:P91351
Length = 443
Score = 229 (85.7 bits), Expect = 6.0e-17, P = 6.0e-17
Identities = 53/147 (36%), Positives = 84/147 (57%)
Query: 46 FFACYLLTSLCPR--FKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIY 102
F+ Y L S R +K YIG+TV+P RRI QHNG + GA +T R PW+MV ++
Sbjct: 172 FYGVYCLISRSDRPCYKNRCYIGYTVDPNRRIMQHNGGRDKGGAKKTDSRGPWDMVCVVH 231
Query: 103 GFPTNVSALQFEWAWQHPM--ESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNI 160
GFP +V+AL FEWAWQ+P+ +SL +Q K + A ++++A ++N + +
Sbjct: 232 GFPNHVAALHFEWAWQNPLVSKSLKEKQLRKERKE-TPFAFQLRIACELMNSSAFCRFAL 290
Query: 161 KVNYF-STKYSKHSSSCPSLPEHMKVQ 186
+ +T+ +SC P+H K++
Sbjct: 291 TFRWLITTEELPFPTSCVP-PDHTKLR 316
>ASPGD|ASPL0000015291 [details] [associations]
symbol:AN8212 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0033557 "Slx1-Slx4 complex"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] InterPro:IPR001841 SMART:SM00184 InterPro:IPR000305
Pfam:PF01541 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006281 EMBL:BN001302 GO:GO:0006310 GO:GO:0090305
GO:GO:0004519 PROSITE:PS50164 KO:K15078 eggNOG:NOG296745
HAMAP:MF_03100 EMBL:AACD01000143 RefSeq:XP_681481.1
ProteinModelPortal:Q5AU18 EnsemblFungi:CADANIAT00004259
GeneID:2869256 KEGG:ani:AN8212.2 HOGENOM:HOG000160050 OMA:PLMMKEL
OrthoDB:EOG46DQCD Uniprot:Q5AU18
Length = 409
Score = 197 (74.4 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 36/59 (61%), Positives = 45/59 (76%)
Query: 64 YIGFTVNPRRRIRQHNGEIRCGAVRT--KKRRPWEMVLCIYGFPTNVSALQFEWAWQHP 120
YIG T +P RR+ QHNG + GA RT +KRRPWEMV+ + GF + ++ALQFEWAWQHP
Sbjct: 11 YIGSTPDPARRLAQHNGLCKGGARRTADEKRRPWEMVMVVEGFMSKIAALQFEWAWQHP 69
>TAIR|locus:2169273 [details] [associations]
symbol:AT5G43210 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA;ISS]
InterPro:IPR000305 Pfam:PF01541 EMBL:CP002688
GenomeReviews:BA000015_GR EMBL:AB017070 KO:K15078 IPI:IPI00532723
RefSeq:NP_199135.1 UniGene:At.30130 ProteinModelPortal:Q9FHS4
SMR:Q9FHS4 IntAct:Q9FHS4 EnsemblPlants:AT5G43210.1 GeneID:834339
KEGG:ath:AT5G43210 TAIR:At5g43210 eggNOG:NOG281567
HOGENOM:HOG000006185 InParanoid:Q9FHS4 OMA:ANRSEAC PhylomeDB:Q9FHS4
ProtClustDB:CLSN2686803 Genevestigator:Q9FHS4 Uniprot:Q9FHS4
Length = 170
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 47 FACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPT 106
++ YL+ S K TY+G T + RR++QHNGEIR GA + RPW I GF
Sbjct: 54 WSVYLILSTTEPIK--TYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTC 111
Query: 107 NVSALQFEWAWQ 118
A FE W+
Sbjct: 112 LSQASSFESKWK 123
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.129 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 382 349 0.00099 116 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 612 (65 KB)
Total size of DFA: 251 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.15u 0.09s 29.24t Elapsed: 00:00:01
Total cpu time: 29.15u 0.09s 29.24t Elapsed: 00:00:01
Start: Tue May 21 01:31:17 2013 End: Tue May 21 01:31:18 2013