BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016815
         (382 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZG2|A Chain A, Solution Nmr Structure Of The Upf0213 Protein Bh0048 From
           Bacillus Halodurans. Northeast Structural Genomics
           Target Bhr2
          Length = 107

 Score = 35.0 bits (79), Expect = 0.063,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 61  GHTYIGFTVNPRRRIRQH-NGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQH 119
           G  Y G+T +  RRI++H +G+   GA  T+ R P+ +V   + FP+   A+++E+  +H
Sbjct: 18  GSWYTGYTTDVDRRIKKHASGK---GAKYTRGRGPFRLV-ATWAFPSKEEAMRWEYEVKH 73


>pdb|1YWL|A Chain A, Solution Nmr Structure Of The Protein Ef2693 From E.
           Faecalis: Northeast Structural Genomics Consortium
           Target Efr36
          Length = 96

 Score = 33.1 bits (74), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 50  YLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVS 109
           Y    LC    G  Y G+T  P RR+ +HN        R  KRRP  M+     F T   
Sbjct: 8   YFYVLLCQ--DGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVIMIH-TEKFETRSE 64

Query: 110 ALQFEWAWQHPMESLAVRQAAATFKSF 136
           A + E A++     L  +Q     K+F
Sbjct: 65  ATKAEAAFK----KLTRKQKEQYLKTF 87


>pdb|3SIP|E Chain E, Crystal Structure Of Drice And Diap1-Bir1 Complex
 pdb|3SIP|F Chain F, Crystal Structure Of Drice And Diap1-Bir1 Complex
          Length = 115

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 120 PMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSL 179
           P++ L  RQ A T   F+   +K+K  F  + + +WE  +  V     ++ + S +CP L
Sbjct: 25  PLDWLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPV----PEHQRWSPNCPLL 80


>pdb|1SDZ|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Reaper Peptide
 pdb|1SE0|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Grim Peptide
          Length = 116

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 120 PMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSL 179
           P++ L  RQ A T   F+   +K+K  F  + + +WE  +  V     ++ + S +CP L
Sbjct: 26  PLDWLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPV----PEHQRWSPNCPLL 81


>pdb|3SIQ|A Chain A, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
 pdb|3SIQ|B Chain B, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
 pdb|3SIQ|C Chain C, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
 pdb|3SIQ|D Chain D, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
 pdb|3SIQ|E Chain E, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
 pdb|3SIQ|F Chain F, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
          Length = 136

 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 120 PMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSL 179
           P++ L  RQ A T   F+   +K+K  F  + + +WE  +  V     ++ + S +CP L
Sbjct: 48  PLDWLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPV----PEHQRWSPNCPLL 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.129    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,683,376
Number of Sequences: 62578
Number of extensions: 331972
Number of successful extensions: 714
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 6
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)