Query 016815
Match_columns 382
No_of_seqs 240 out of 950
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3005 GIY-YIG type nuclease 100.0 1.5E-41 3.3E-46 324.2 10.5 233 41-283 3-250 (276)
2 PRK00329 GIY-YIG nuclease supe 99.9 5.5E-23 1.2E-27 167.7 10.8 78 44-128 4-81 (86)
3 COG2827 Predicted endonuclease 99.9 2E-21 4.4E-26 162.2 9.3 79 45-130 3-81 (95)
4 PF01541 GIY-YIG: GIY-YIG cata 98.9 2.7E-09 5.8E-14 81.4 7.0 68 46-119 1-72 (80)
5 smart00465 GIYc GIY-YIG type n 98.1 8.9E-06 1.9E-10 62.0 7.1 68 48-119 3-72 (84)
6 PF10544 T5orf172: T5orf172 do 96.9 0.0028 6E-08 50.5 6.2 63 48-119 2-66 (100)
7 TIGR01453 grpIintron_endo grou 96.7 0.0041 8.8E-08 58.2 6.6 68 48-119 3-77 (214)
8 PHA02598 denA endonuclease II; 78.8 6.4 0.00014 35.9 6.3 32 45-80 32-63 (138)
9 PRK14671 uvrC excinuclease ABC 76.6 8.5 0.00018 42.1 7.6 77 37-118 13-91 (621)
10 PRK12306 uvrC excinuclease ABC 74.9 6.8 0.00015 42.0 6.3 68 44-117 8-77 (519)
11 PRK14668 uvrC excinuclease ABC 74.5 8.1 0.00018 41.9 6.8 73 36-117 6-80 (577)
12 PRK00558 uvrC excinuclease ABC 73.9 8.2 0.00018 41.9 6.7 73 39-117 7-81 (598)
13 PRK10545 nucleotide excision r 73.5 6.2 0.00014 39.3 5.3 68 40-117 28-98 (286)
14 PRK14667 uvrC excinuclease ABC 71.5 11 0.00024 40.9 7.0 71 40-117 10-82 (567)
15 PRK14666 uvrC excinuclease ABC 71.2 11 0.00023 42.1 6.9 73 41-118 7-81 (694)
16 PRK14672 uvrC excinuclease ABC 71.0 12 0.00026 41.8 7.1 73 38-117 13-87 (691)
17 PRK14669 uvrC excinuclease ABC 70.7 12 0.00026 41.1 7.1 77 40-121 7-85 (624)
18 PRK07883 hypothetical protein; 67.2 9.4 0.0002 41.0 5.3 99 7-117 184-284 (557)
19 PF13455 MUG113: Meiotically u 65.1 4 8.7E-05 33.6 1.6 16 65-80 3-18 (83)
20 TIGR00194 uvrC excinuclease AB 62.2 21 0.00045 38.9 6.8 68 43-117 8-77 (574)
21 COG3680 Uncharacterized protei 42.8 44 0.00095 33.1 4.9 68 47-119 16-98 (259)
22 COG0322 UvrC Nuclease subunit 39.6 75 0.0016 34.9 6.6 78 40-124 9-88 (581)
23 smart00878 Biotin_carb_C Bioti 32.4 1.1E+02 0.0025 26.1 5.4 67 85-165 40-106 (107)
24 PRK14670 uvrC excinuclease ABC 27.9 86 0.0019 34.4 4.7 53 61-117 7-61 (574)
No 1
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=324.18 Aligned_cols=233 Identities=34% Similarity=0.598 Sum_probs=181.3
Q ss_pred ccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccccCCCeeEEEEEeccCCHHHHHHHHHHhcCC
Q 016815 41 DQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHP 120 (382)
Q Consensus 41 ~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~p 120 (382)
+....||+||||.|.+|+++|++|||+|+||.||||||||.++|||++|++++||+||++|+|||++.+|||||||||||
T Consensus 3 ~~~~~Fy~cYlL~s~sp~~r~~~yigst~nP~rRlRqhNg~~~gga~kt~~~~PWeMv~iV~GFPn~vsALqFEwAWQ~p 82 (276)
T KOG3005|consen 3 KDGKGFYCCYLLTSLSPRYKGRTYIGSTVNPSRRLRQHNGEIKGGAWKTKKRRPWEMVMIVHGFPNKVSALQFEWAWQHP 82 (276)
T ss_pred cccCceEEEEEEeecCcCcCCceEEeeeCCCchhHHhhCCcccCcccccCCCCCceEEEEeccCCccchhcchhhhccCc
Confidence 34578999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CchhHHHHhhhhhc---ccccccchHHHHHHhcCCCCCCCCCceEEEecchhhhcccCCCCCCCcceEeeecCCCCcccc
Q 016815 121 MESLAVRQAAATFK---SFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYT 197 (382)
Q Consensus 121 ~~sr~lr~~~~~~K---~~sg~~~klrll~~ML~~~pw~RlpLtV~~Fs~e~~~~~~~c~~lP~Hm~v~~g~~~~Lp~~~ 197 (382)
..|+++++....+| ...-|.++|+++.+|+++++|.|+||+++|+..++..-+. |.++|.||.+.+|.+.--....
T Consensus 83 ~~S~~~k~~~~~~k~~~~et~F~~~Lr~l~~~~~~~aw~R~pl~~~wl~~~~~~~f~-~l~~p~h~~~~~~~~~~~~~~~ 161 (276)
T KOG3005|consen 83 LISRYLKEKDTRLKSKSIETDFMYRLRILNHVLRSGAWARSPLTIRWLETDLETPFT-CLSQPGHSELKFGKVTRKAPAV 161 (276)
T ss_pred chhhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCchhcCCccchhcchhhcCCcc-ccCCCCcccccccccccccccc
Confidence 99999999987777 5667899999999999999999999999999999887666 8899999999998875333222
Q ss_pred ccccCccCCCCCCCCccccccccCCCCccccccccccC--------CCCCCcchhhhhhhhhhhccc----ccCCCCCCC
Q 016815 198 ERDESLLGDEDSLGDEDYNEASENSGSLEETCGDVTIN--------FSSDYSFSIYEAADEQCGQFK----QYGNEQPRD 265 (382)
Q Consensus 198 ~~~~~~~~~~~~~~d~~~~e~s~~S~S~~qv~~D~~~~--------~ss~~~~ti~~~~~~~~~~~~----~~~~rqp~~ 265 (382)
+....- +-.|+..+--..--+....+|++-... ..+++.- .+|-+|++-. +.|.=-|..
T Consensus 162 ~~~~~~-----~~eDal~~~~~~~~~~~celc~~ei~e~~~~~a~c~~~~c~~----~~h~~CLa~~~~~~e~g~~~p~e 232 (276)
T KOG3005|consen 162 KRRRDM-----SFEDALPQPRTGALNVECELCEKEILETDWSRATCPNPDCDS----LNHLTCLAEELLEVEPGQLIPLE 232 (276)
T ss_pred cccccC-----chhhcccCccccccchhhHHHHHHhccccceeccCCCCCCCc----hhhhhhhhHHHhccCCCceeccC
Confidence 222111 112222222222222344455544421 1222222 3677786552 666677888
Q ss_pred CCCccccccCCCCCcccc
Q 016815 266 SSCLEVNCQQPFGLLSSL 283 (382)
Q Consensus 266 ~~~p~~~c~qPfg~~s~~ 283 (382)
--||.|+...=|+-+-.+
T Consensus 233 g~cp~C~~~~~w~~lv~~ 250 (276)
T KOG3005|consen 233 GMCPKCEKFLSWTTLVDL 250 (276)
T ss_pred CCCCchhceeeHHHHHHH
Confidence 999999998777766443
No 2
>PRK00329 GIY-YIG nuclease superfamily protein; Validated
Probab=99.89 E-value=5.5e-23 Score=167.67 Aligned_cols=78 Identities=27% Similarity=0.368 Sum_probs=70.6
Q ss_pred CCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccccCCCeeEEEEEeccCCHHHHHHHHHHhcCCCch
Q 016815 44 KGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMES 123 (382)
Q Consensus 44 ~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~p~~s 123 (382)
+.+||||||+|.+ |++|||+|+||.+||+|||.| +||++|++++||.||+ ++.|+++++|+++|++||+..+.
T Consensus 4 ~~~~~vYil~~~~----~~~Y~G~T~dl~~Rl~qH~~g--~ga~~tr~~~p~~Lv~-~e~~~~~~~A~~~E~~lK~~~r~ 76 (86)
T PRK00329 4 MKPWFLYLLRCAD----GSLYTGITTDVERRFAQHQSG--KGAKYTRGRPPLTLVF-VEPVGDRSEALRAEYRFKQLTKK 76 (86)
T ss_pred CCceEEEEEEcCC----CCEEEEEcCCHHHHHHHHHcC--CCCCCccCCCceEEEE-EEECCCHHHHHHHHHHHhcCCHH
Confidence 5679999999987 899999999999999999986 6899999999999997 79999999999999999997766
Q ss_pred hHHHH
Q 016815 124 LAVRQ 128 (382)
Q Consensus 124 r~lr~ 128 (382)
.+++-
T Consensus 77 ~K~~l 81 (86)
T PRK00329 77 QKERL 81 (86)
T ss_pred HHHHH
Confidence 65543
No 3
>COG2827 Predicted endonuclease containing a URI domain [DNA replication, recombination, and repair]
Probab=99.85 E-value=2e-21 Score=162.22 Aligned_cols=79 Identities=25% Similarity=0.316 Sum_probs=72.5
Q ss_pred CceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccccCCCeeEEEEEeccCCHHHHHHHHHHhcCCCchh
Q 016815 45 GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESL 124 (382)
Q Consensus 45 ~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~p~~sr 124 (382)
..||||||+|.| |++|||+|+|+.||+.|||.| .||+||++++|..||+ ++.|+++++||++|+++|+..+..
T Consensus 3 ~~~~vYil~c~d----gtlY~GvT~D~~rR~~~H~~G--kgakyT~~~~~~~Lv~-~e~~~~~~~A~~~E~~iK~~~R~~ 75 (95)
T COG2827 3 NNWYVYILRCAD----GTLYTGVTTDLERRLAEHNSG--KGAKYTRRYGPVRLVW-YEEFDDKSEALRREKRIKKLTRKQ 75 (95)
T ss_pred cceEEEEEEeCC----CCEEEEecCCHHHHHHHHhcc--cccchhccCCceEEEE-EeecCCHHHHHHHHHHHHHHhHHH
Confidence 468999999998 999999999999999999997 6999999999999998 899999999999999999988777
Q ss_pred HHHHhh
Q 016815 125 AVRQAA 130 (382)
Q Consensus 125 ~lr~~~ 130 (382)
+++-+.
T Consensus 76 K~~LIe 81 (95)
T COG2827 76 KERLIE 81 (95)
T ss_pred HHHHHh
Confidence 766554
No 4
>PF01541 GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR000305 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. It is found in the amino terminal region of excinuclease abc subunit c (uvrC), Bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage.; GO: 0004518 nuclease activity, 0006281 DNA repair, 0005622 intracellular; PDB: 1YWL_A 1YD6_D 1YD5_A 1YD1_A 1YCZ_A 1YD0_A 1YD3_A 1YD4_A 1YD2_A 1LN0_A ....
Probab=98.94 E-value=2.7e-09 Score=81.36 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=54.9
Q ss_pred ceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccc----cCCCeeEEEEEeccCCHHHHHHHHHHhcC
Q 016815 46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTK----KRRPWEMVLCIYGFPTNVSALQFEWAWQH 119 (382)
Q Consensus 46 fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr----~~rPWemV~ivegF~sKseALqfEwawK~ 119 (382)
.++||+|.|.+ .+.+|||.|.|+.+|+.+|+.+. ++..+. ....|+++ +++.+.+..+|+.+|..|..
T Consensus 1 k~gIY~i~~~~---~~~~YIG~t~nl~~R~~~H~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~i~ 72 (80)
T PF01541_consen 1 KYGIYIIYNKD---NKKIYIGSTKNLKKRLNEHFSGN--KSKKKKQKKYGWDNFEFI-IIEEFNTKSEALKLEQYLIK 72 (80)
T ss_dssp -EEEEEEEETT---TEEEEEEEESSHHHHHHHHHHHC--THCSHCHHHHHSSCEEEE-EEEEESSHHHHHHHHHHHHH
T ss_pred CcEEEEEEECC---CCEEEEEEECCHHHHHHHHhcCC--CCCcchhhhcccccEEEE-eeEEeCCHHHHHHHHHHHHH
Confidence 36899999987 25689999999999999998753 223333 26899998 58999999999999999865
No 5
>smart00465 GIYc GIY-YIG type nucleases (URI domain).
Probab=98.14 E-value=8.9e-06 Score=61.99 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=43.8
Q ss_pred EEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccc--cCCCeeEEEEEeccCCHHHHHHHHHHhcC
Q 016815 48 ACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTK--KRRPWEMVLCIYGFPTNVSALQFEWAWQH 119 (382)
Q Consensus 48 ~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr--~~rPWemV~ivegF~sKseALqfEwawK~ 119 (382)
+||++.+.. .+.+|||.|.|+.+|+.+|..+..++..... ...+|.+.+.+-.+.... |+.+|..|.+
T Consensus 3 gvY~i~~~~---~~~~YVG~t~nl~~R~~~h~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~E~~~i~ 72 (84)
T smart00465 3 GVYYITNKK---NGKLYVGKAKNLRNRLKRHFSGSRKGRLLIDALLKYGGNFEFIILESFDES-ALELEKYLIK 72 (84)
T ss_pred EEEEEEECC---CCEEEEEEccCHHHHHHHHHhCCCCChHHHHHHHHhcCCeEEEEeecChHh-HHHHHHHHHH
Confidence 689998854 3899999999999999999975332222222 123433333233333333 8888888765
No 6
>PF10544 T5orf172: T5orf172 domain; InterPro: IPR018306 This entry represents a DNA-binding domain found in bacteriophage T5, ORF172 []. The domain is related to the Bro-N and KilA-N domains that are widespread in large-DNA viruses infecting bacteria and eukaryotes [].
Probab=96.90 E-value=0.0028 Score=50.46 Aligned_cols=63 Identities=29% Similarity=0.346 Sum_probs=44.8
Q ss_pred EEEEeeeCCCCCCCc--EEEEecCCHHHHHHHHhCCCCCCccccccCCCeeEEEEEeccCCHHHHHHHHHHhcC
Q 016815 48 ACYLLTSLCPRFKGH--TYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQH 119 (382)
Q Consensus 48 ~VYLL~S~d~r~~gs--~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~ 119 (382)
|+|++.+.. ..+. +=||+|.||.+|++|++.. .+....+|++++. ..+.....|-+.|..+++
T Consensus 2 yiYi~~~~~--~~~~~~~KIG~T~~~~~Rl~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~E~~ih~ 66 (100)
T PF10544_consen 2 YIYILTSPS--NPGYNIYKIGYTTNPERRLRELNRN------STGSPFDFEVIYE-FESVPVPDARKVERLIHR 66 (100)
T ss_pred EEEEEEecC--CCCceeEEEeeECCHHHHHHHhhcc------ccCCCCceeEEEE-EEEEecCCHHHHHHHHHH
Confidence 689997754 2355 7899999999999999942 1345678888763 344445567777887765
No 7
>TIGR01453 grpIintron_endo group I intron endonuclease. This model represents one subfamily of endonucleases containing the endo/excinuclease amino terminal domain, Pfam:PF01541 at its amino end. A distinct subfamily includes excinuclease abc subunit c (uvrC). Members of pfam01541 are often termed GIY-YIG endonucleases after conserved motifs near the amino end. This subfamily in this model is found in open reading frames of group I introns in both phage and mitochondria. The closely related endonucleases of phage T4: segA, segB, segC, segD and segE, score below the trusted cutoff for the family.
Probab=96.69 E-value=0.0041 Score=58.23 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=45.7
Q ss_pred EEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcc-ccc----cCC--CeeEEEEEeccCCHHHHHHHHHHhcC
Q 016815 48 ACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAV-RTK----KRR--PWEMVLCIYGFPTNVSALQFEWAWQH 119 (382)
Q Consensus 48 ~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk-~Tr----~~r--PWemV~ivegF~sKseALqfEwawK~ 119 (382)
+||++++.. .|.+|||.|.|+.+|+.+|......|.. ... .++ -+.+.. .+.+-+..+.+.+|..|-.
T Consensus 3 GIY~i~n~~---ngk~YIGss~nl~~R~~~h~~~~~~~~~~~l~~ai~kyG~~nF~~~i-le~~~~~~~l~~lE~~~I~ 77 (214)
T TIGR01453 3 GIYKITNNI---NGKIYVGSSVNLEKRLKEHLKLLKKGNRIKLQKALNKYGWSNFSFEI-LEYYCNKDDLIERETYYIK 77 (214)
T ss_pred EEEEEEECC---CCcEEEEeccCHHHHHHHHHHHHhcCChHHHHHHHHHhChHheEEEE-EEEeCCHHHHHHHHHHHHH
Confidence 699999964 3899999999999999999864333433 221 222 344443 3333466677789988764
No 8
>PHA02598 denA endonuclease II; Provisional
Probab=78.77 E-value=6.4 Score=35.87 Aligned_cols=32 Identities=28% Similarity=0.216 Sum_probs=26.9
Q ss_pred CceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhC
Q 016815 45 GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG 80 (382)
Q Consensus 45 ~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg 80 (382)
.-.+||+.+..+ .-+|||-+.|+..|++++-.
T Consensus 32 ~~n~VY~~~~~~----~viYVGKAknLkkRv~sYf~ 63 (138)
T PHA02598 32 KKNVIYAIAVDD----ELVYIGKTKNLRKRIDYYRN 63 (138)
T ss_pred cceEEEEEEeCC----eEEEEeehhhHHHHHHHHhC
Confidence 446899998544 68999999999999999964
No 9
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=76.56 E-value=8.5 Score=42.10 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=52.3
Q ss_pred HhhhccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHH
Q 016815 37 QKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFE 114 (382)
Q Consensus 37 ~~~~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfE 114 (382)
+...+..|.-=+||+.+-.+ ..-+|||=+.|+.+|+++|=.+......+|.. ..-+.+-|++ ..|..+||-+|
T Consensus 13 ~~~l~~lP~~PGVYl~~d~~---g~viYVGKAknLr~RV~sYF~~~~~~~~K~~~lv~~i~~ie~i~--t~sE~EALlLE 87 (621)
T PRK14671 13 VEKLASLPTSPGVYQFKNAA---GRVIYVGKAKNLRNRVRSYFRNSRQLSGKTLVLVGHIADLEVII--TSSEVEALILE 87 (621)
T ss_pred HHHHHhCCCCCeEEEEECCC---CCEEEeecchhHHHHHHHHcCCCCCCChHHHHHHHhhceEEEEE--eCCHHHHHHHH
Confidence 34455567777999999875 25899999999999999996421111223432 2344555433 36999999999
Q ss_pred HHhc
Q 016815 115 WAWQ 118 (382)
Q Consensus 115 wawK 118 (382)
..+=
T Consensus 88 ~~LI 91 (621)
T PRK14671 88 NNLI 91 (621)
T ss_pred HHHH
Confidence 7653
No 10
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=74.92 E-value=6.8 Score=42.02 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=47.0
Q ss_pred CCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHHh
Q 016815 44 KGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAW 117 (382)
Q Consensus 44 ~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwaw 117 (382)
|.-=+||+.+-.+ ..-+|||=+.|+.+|+++|=.+...+ .+|+. ..-..+-|++ ..|..+||-+|..+
T Consensus 8 P~~PGVYl~~d~~---g~vIYVGKAknLr~RV~sYF~~~~~~-~K~~~lv~~i~~ie~iv--t~sE~eALlLE~~L 77 (519)
T PRK12306 8 PTNPGCYLYKDEE---GTIIYVGKAKNLKKRVSSYFQKKDHD-PKTQSLVKAIRDIEFIV--TDNEVEALLLENTL 77 (519)
T ss_pred CCCCeEEEEECCC---CCEEEeccchhHHHHHHHhCCCCCCC-hHHHHHHHHhcEEEEEE--eCCHHHHHHHHHHH
Confidence 4444899999875 25899999999999999996532112 23443 2344454433 35999999999765
No 11
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=74.48 E-value=8.1 Score=41.92 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=49.3
Q ss_pred HHhhhccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHH
Q 016815 36 EQKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQF 113 (382)
Q Consensus 36 ~~~~~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqf 113 (382)
.+...+..|.-=+||+.+- + ..-+|||=+.|+.+|+++|-.. . ..+|+. ..-+.+-+++ .+|..+||-+
T Consensus 6 l~~k~~~LP~~PGVYl~~d-~---g~viYVGKAknLr~RV~sYF~~--~-~~k~~~lv~~i~~ie~i~--t~sE~eALlL 76 (577)
T PRK14668 6 VRERAAELPREPGVYQFVA-G---GTVLYVGKAVDLRDRVRSYADP--R-SERIRRMVERADDIDFAV--TDTETQALLL 76 (577)
T ss_pred HHHHHHhCCCCCEEEEEcC-C---CeEEEeeCcHhHHHHHHHHcCC--C-ChHHHHHHHhhCeEEEEE--eCCHHHHHHH
Confidence 3344455566668999874 3 1589999999999999999642 1 224542 2334444433 3599999999
Q ss_pred HHHh
Q 016815 114 EWAW 117 (382)
Q Consensus 114 Ewaw 117 (382)
|..+
T Consensus 77 E~~L 80 (577)
T PRK14668 77 EANL 80 (577)
T ss_pred HHHH
Confidence 9765
No 12
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=73.94 E-value=8.2 Score=41.89 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=49.7
Q ss_pred hhccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHH
Q 016815 39 AKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWA 116 (382)
Q Consensus 39 ~~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwa 116 (382)
..+..|.--+||+.+-.+ ..-+|||=+.|+.+|+++|=.+.... .+|.. ..-..+-+++ ..|..+||-.|..
T Consensus 7 ~l~~lP~~PGVY~~~d~~---g~viYVGKAknLr~Rv~sYF~~~~~~-~k~~~lv~~i~~ie~i~--t~sE~eALlLE~~ 80 (598)
T PRK00558 7 KLKTLPDSPGVYRMKDAN---GTVIYVGKAKNLKNRVRSYFRKSHDS-PKTRAMVSEIADIEYIV--TRSETEALLLENN 80 (598)
T ss_pred HHhhCCCCCeEEEEECCC---CCEEEecCchhHHHHHHhhCCCCCcC-hHHHHHHHhcCeEEEEE--eCCHHHHHHHHHH
Confidence 345567777999999865 25899999999999999996532111 23443 2233444433 3589999999976
Q ss_pred h
Q 016815 117 W 117 (382)
Q Consensus 117 w 117 (382)
|
T Consensus 81 L 81 (598)
T PRK00558 81 L 81 (598)
T ss_pred H
Confidence 5
No 13
>PRK10545 nucleotide excision repair endonuclease; Provisional
Probab=73.54 E-value=6.2 Score=39.35 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=45.7
Q ss_pred hccCCCceEEEEeeeCCCCCCC-c-EEEEecCCHHHHHHHHhCCCCCCcccccc-CCCeeEEEEEeccCCHHHHHHHHHH
Q 016815 40 KDQQKGFFACYLLTSLCPRFKG-H-TYIGFTVNPRRRIRQHNGEIRCGAVRTKK-RRPWEMVLCIYGFPTNVSALQFEWA 116 (382)
Q Consensus 40 ~~~~~~fy~VYLL~S~d~r~~g-s-~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~-~rPWemV~ivegF~sKseALqfEwa 116 (382)
.+..|.--+||+.+-.+ | . +|||=+.|+.+|+.+|=.. ++..+. ..-..+-+ ....+-.+||-.|..
T Consensus 28 l~~LP~~PGVYlf~d~~----g~~~LYVGKAknLR~RV~syF~~----~k~~~m~~~i~~Ie~--i~T~sEleALLLE~~ 97 (286)
T PRK10545 28 LEDLPKLPGVYLFHGES----DTMPLYIGKSVNIRSRVLSHLRT----PDEAAMLRQSRRISW--ICTAGEIGALLLEAR 97 (286)
T ss_pred HHhCCCCCeEEEEEcCC----CCEEEEEechHhHHHHHHHHcCc----HHHHHHHHhcceEEE--EEeCCHHHHHHHHHH
Confidence 34456666999999766 5 4 8999999999999999642 121111 22333333 234689999999966
Q ss_pred h
Q 016815 117 W 117 (382)
Q Consensus 117 w 117 (382)
+
T Consensus 98 L 98 (286)
T PRK10545 98 L 98 (286)
T ss_pred H
Confidence 4
No 14
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=71.50 E-value=11 Score=40.87 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=47.6
Q ss_pred hccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHHh
Q 016815 40 KDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAW 117 (382)
Q Consensus 40 ~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwaw 117 (382)
.+..|.-=+||+.+ .+ ..-+|||=+.|+.+|+++|=.+...+ .+|.. ..-..+-|+ -..|..+||-+|..+
T Consensus 10 l~~lP~~PGVYl~~-~~---g~viYVGKAknLr~RV~sYF~~~~~~-~K~~~lv~~i~~ie~i--~t~sE~EALlLE~~L 82 (567)
T PRK14667 10 IEKAPEEPGVYLFK-KK---KRYIYIGKAKNIKNRLLQHYKQSETD-PKERAIFSESSSLEWI--ITRNEYEALVLEIDL 82 (567)
T ss_pred HHhCCCCCeEEEEe-cC---CeEEEeeCcHhHHHHHHHHcCCCCCC-hHHHHHHHhhCeEEEE--EeCCHHHHHHHHHHH
Confidence 34455556899998 65 24799999999999999996532112 23543 233344443 336999999999765
No 15
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=71.21 E-value=11 Score=42.09 Aligned_cols=73 Identities=18% Similarity=0.113 Sum_probs=49.5
Q ss_pred ccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHHhc
Q 016815 41 DQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQ 118 (382)
Q Consensus 41 ~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwawK 118 (382)
+..|.-=+||+.+-.+ ..-+|||=+.|+.+|+++|=.+......+|.. ..-+.+-|+ -..|..+||-+|..+=
T Consensus 7 ~~LP~~PGVYlfkD~~---G~VIYVGKAKNLR~RV~SYF~~~~~~~~K~~~Lv~~i~~Ie~i--vT~sE~EALLLE~~LI 81 (694)
T PRK14666 7 STIPLTPGVYLYKDEA---GRIIYVGKARHLRRRVASYFRDVSALTPKTVAMLRHAVTIDTL--STTTEKEALLLEASLI 81 (694)
T ss_pred hhCCCCCeEEEEECCC---CCEEEeeCcHhHHHHHHHHcCCCCCCChHHHHHHHhcCeeEEE--EeCCHHHHHHHHHHHH
Confidence 3445556899999865 25899999999999999996531111223433 344555553 3469999999997653
No 16
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=71.03 E-value=12 Score=41.78 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=49.9
Q ss_pred hhhccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHH
Q 016815 38 KAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEW 115 (382)
Q Consensus 38 ~~~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEw 115 (382)
......|.-=+||+.+-.+ ..-+|||=+.|+.+|+++|=.+. -..+|+. ..-+.+-|+ ...|..+||-+|.
T Consensus 13 ~~~~~LP~~PGVYlfkd~~---G~VLYVGKAKNLR~RV~SYF~~~--~~~K~~~Lv~~i~~Ie~i--vT~sE~EALLLE~ 85 (691)
T PRK14672 13 IQALSAPSTSGVYLWKDVH---GVVIYVGKAKSLRTRLTSYFRCR--HDPKTRVLMSRAAALEYL--QTQHEYEALLLEN 85 (691)
T ss_pred HHHHhCCCCCeEEEEECCC---CCEEEeeCcHHHHHHHHHHcCCC--CCchHHHHHHhhCcEEEE--EeCCHHHHHHHHH
Confidence 3344456666899999875 14699999999999999996531 1223442 334455543 3469999999997
Q ss_pred Hh
Q 016815 116 AW 117 (382)
Q Consensus 116 aw 117 (382)
.+
T Consensus 86 ~L 87 (691)
T PRK14672 86 TL 87 (691)
T ss_pred HH
Confidence 65
No 17
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=70.71 E-value=12 Score=41.10 Aligned_cols=77 Identities=19% Similarity=0.172 Sum_probs=51.4
Q ss_pred hccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHHh
Q 016815 40 KDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAW 117 (382)
Q Consensus 40 ~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwaw 117 (382)
.+..|.-=+||+.+..+ ..-+|||=+.|+.+|+++|=........+|+. ..-+.+-++ -..|..+||-+|..+
T Consensus 7 l~~lP~~PGVYl~~d~~---g~viYVGKAknLr~RV~sYF~~~~~~~~K~~~lv~~i~~ie~i--~t~sE~EALlLE~~L 81 (624)
T PRK14669 7 IRTLPTSPGVYLYKNAG---GEVIYVGKAKNLRSRVRSYFSEDKLGNIKTGSLIREAVDIDYI--LVDNEKEALALENNL 81 (624)
T ss_pred HHhCCCCCeEEEEECCC---CCEEEeeCchhHHHHHHHHhccCccCChHHHHHHHhhceEEEE--EeCCHHHHHHHHHHH
Confidence 34445556899999865 24799999999999999996521111224543 234445543 346999999999776
Q ss_pred cCCC
Q 016815 118 QHPM 121 (382)
Q Consensus 118 K~p~ 121 (382)
=+-+
T Consensus 82 Ik~~ 85 (624)
T PRK14669 82 IKQY 85 (624)
T ss_pred Hhhh
Confidence 4433
No 18
>PRK07883 hypothetical protein; Validated
Probab=67.20 E-value=9.4 Score=40.99 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=60.8
Q ss_pred CccccCcchhhcccccCCCCCCchhhhHHHHhhhccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCc
Q 016815 7 SKAVHDPETLISKSKTLDPVKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGA 86 (382)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGA 86 (382)
...+...+-|+...+.++|.+--. . ...+..|.-=+||+.+-.+ ..-+|||-+.|+.+|+++|=......
T Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~~~----~--~~~~~lP~~PGVY~~~d~~---g~viYVGKAknLr~Rv~sYF~~~~~~- 253 (557)
T PRK07883 184 NLGVHTLEELLTYLPRVTPAQRRK----R--HLADGLPHAPGVYLFRGPS---GEVLYVGTAVNLRRRVRSYFTAAETR- 253 (557)
T ss_pred hcCCCCHHHHHHhhhhcChhhhcc----h--HHHhhCCCCceEEEEECCC---CcEEEeehhhhHHHHHHHHcCCCCCC-
Confidence 334444555666666666655221 1 1123345555899999875 24799999999999999996532112
Q ss_pred ccccc--CCCeeEEEEEeccCCHHHHHHHHHHh
Q 016815 87 VRTKK--RRPWEMVLCIYGFPTNVSALQFEWAW 117 (382)
Q Consensus 87 k~Tr~--~rPWemV~ivegF~sKseALqfEwaw 117 (382)
.+|.. ..-..+-++ -.+|..+||-+|..+
T Consensus 254 ~k~~~lv~~i~~ie~i--~t~sE~eAllLE~~l 284 (557)
T PRK07883 254 GRMREMVALAERVDHV--ECAHALEAEVRELRL 284 (557)
T ss_pred chHHHHHhhhceEEEE--EeCCHHHHHHHHHHH
Confidence 23432 223344443 336999999999754
No 19
>PF13455 MUG113: Meiotically up-regulated gene 113
Probab=65.10 E-value=4 Score=33.56 Aligned_cols=16 Identities=44% Similarity=0.555 Sum_probs=15.2
Q ss_pred EEecCCHHHHHHHHhC
Q 016815 65 IGFTVNPRRRIRQHNG 80 (382)
Q Consensus 65 IG~T~Dp~RRLrQHNg 80 (382)
||.|+|+.+||.|.+.
T Consensus 3 IGrt~nv~rRl~qW~~ 18 (83)
T PF13455_consen 3 IGRTTNVERRLNQWSR 18 (83)
T ss_pred ccccCCHHHHHHHHHH
Confidence 8999999999999986
No 20
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=62.20 E-value=21 Score=38.88 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=47.4
Q ss_pred CCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHHh
Q 016815 43 QKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAW 117 (382)
Q Consensus 43 ~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwaw 117 (382)
.|.-=+||+.+-.. ..-+|||=+.|+.+|+++|=... ...+|+. ..-+.+-+++ ..|..+||-+|..|
T Consensus 8 lP~~PGVYl~~d~~---g~viYVGKAknLr~Rv~sYF~~~--~~~K~~~mv~~i~~ie~iv--t~sE~eALlLE~~l 77 (574)
T TIGR00194 8 LPDKPGCYLMKDRN---GQVLYVGKAKNLKKRVSSYFREN--NSAKTQALVKQIADIEYIL--TKNENEALILEANL 77 (574)
T ss_pred CCCCCeEEEEECCC---CCEEEEecHHHHHHHHHHhcCCC--CCchHHHHHHhcCeEEEEE--eCCHHHHHHHHHHH
Confidence 44555899999875 25899999999999999996531 1234542 2334444433 35899999999765
No 21
>COG3680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.82 E-value=44 Score=33.08 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=43.0
Q ss_pred eEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCC-CC---------cccc---c--cCCCeeEEEEEeccCCHHHHH
Q 016815 47 FACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIR-CG---------AVRT---K--KRRPWEMVLCIYGFPTNVSAL 111 (382)
Q Consensus 47 y~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~-gG---------Ak~T---r--~~rPWemV~ivegF~sKseAL 111 (382)
||||+|.- ||....+|+|--. -.|+-.|.-+.. .+ ++.- | +.-|--++. ++|.++...|+
T Consensus 16 ~YVY~l~D--pr~~~ifYVGKG~--GnRVf~H~~~~sa~~d~~~~~srKlk~i~e~r~agl~iih~i~-~hgl~dEktay 90 (259)
T COG3680 16 FYVYCLTD--PRKDKIFYVGKGC--GNRVFEHEWVASASQDSGEIISRKLKAISECRKAGLYIIHLIE-VHGLADEKTAY 90 (259)
T ss_pred eEEEEEec--CCCCcEEEEecCC--ccchHHhhhhhhcccccchHHHHHHHHHHHHHHcCCeeeeeeh-hhcCcchhHHH
Confidence 77999864 4455689999664 357888872110 01 1111 1 233444554 89999999999
Q ss_pred HHHHHhcC
Q 016815 112 QFEWAWQH 119 (382)
Q Consensus 112 qfEwawK~ 119 (382)
+.|.|+=.
T Consensus 91 ~~eaa~id 98 (259)
T COG3680 91 KLEAAIID 98 (259)
T ss_pred HHHHHHhh
Confidence 99988643
No 22
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=39.58 E-value=75 Score=34.91 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=54.8
Q ss_pred hccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHHh
Q 016815 40 KDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAW 117 (382)
Q Consensus 40 ~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwaw 117 (382)
.+..|..=+||+.+-.+ ..-+|||=..|+.+|++++=.+. +..+|.. ...-.|.+++- .+-.+||-+|.-|
T Consensus 9 l~~lP~~PGvY~~~d~~---g~VlYVGKAknLr~Rv~sYF~~~--~~~kt~~lv~~i~~iE~ivt--~~E~EALlLE~nL 81 (581)
T COG0322 9 LKNLPHSPGVYLMKDEN---GTVLYVGKAKNLRKRVSSYFRGR--LDPKTAALVENIADIEYIVT--DTETEALLLENNL 81 (581)
T ss_pred HHhCCCCCeeEEEECCC---CCEEEEeehhhHHHHHHHhhcCC--CcHHHHHHHHhhcceeEEEe--CCHHHHHHHHHhH
Confidence 45556667999999876 25799999999999999996532 2245653 34445555442 5899999999887
Q ss_pred cCCCchh
Q 016815 118 QHPMESL 124 (382)
Q Consensus 118 K~p~~sr 124 (382)
=+-+.-+
T Consensus 82 IK~~~Pr 88 (581)
T COG0322 82 IKKHKPR 88 (581)
T ss_pred HHhhCCc
Confidence 5544433
No 23
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=32.44 E-value=1.1e+02 Score=26.12 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=45.9
Q ss_pred CccccccCCCeeEEEEEeccCCHHHHHHHHHHhcCCCchhHHHHhhhhhcccccccchHHHHHHhcCCCCCCCCCceEEE
Q 016815 85 GAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164 (382)
Q Consensus 85 GAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~p~~sr~lr~~~~~~K~~sg~~~klrll~~ML~~~pw~RlpLtV~~ 164 (382)
|..-+-.+-|.--..|+++ +++.+|+++ ++.+...+. ..|+...+..+..+|+.+-|..-..+.+|
T Consensus 40 G~~v~~~yDsmlAKliv~g-~~R~~A~~r------------l~~aL~e~~-i~Gv~TN~~~l~~ll~~~~f~~g~~~T~~ 105 (107)
T smart00878 40 GYEVPPYYDSMIAKLIVHG-ETREEAIAR------------LRRALDEFR-IEGVKTNIPFLRALLRHPDFRAGDVDTGF 105 (107)
T ss_pred CCCcCcchhhhceEEEEEc-CCHHHHHHH------------HHHHHHhCE-EECccCCHHHHHHHhcCHhhhcCcccccc
Confidence 4444445677744445666 688888875 333333332 34788889999999999999888888877
Q ss_pred e
Q 016815 165 F 165 (382)
Q Consensus 165 F 165 (382)
+
T Consensus 106 l 106 (107)
T smart00878 106 L 106 (107)
T ss_pred c
Confidence 6
No 24
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=27.85 E-value=86 Score=34.36 Aligned_cols=53 Identities=23% Similarity=0.183 Sum_probs=37.1
Q ss_pred CcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHHh
Q 016815 61 GHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAW 117 (382)
Q Consensus 61 gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwaw 117 (382)
.-+|||=+.|+.+|+++|=... . ..+|+. ..-+.+-|++ .+|..+||-+|..+
T Consensus 7 ~vIYVGKAknLr~RV~sYF~~~-~-~~K~~~lv~~i~~ie~iv--t~sE~EALlLE~~L 61 (574)
T PRK14670 7 KILYIGKAKNLRSRVKNYFLEK-I-SHKTKILMKNVKNIEVIT--TNSEYEALLLECNL 61 (574)
T ss_pred CEEEeeCcHhHHHHHHHHcCCC-C-CchHHHHHHhcCeEEEEE--eCCHHHHHHHHHHH
Confidence 5799999999999999996531 1 224543 3344555433 36999999999665
Done!