Query 016815
Match_columns 382
No_of_seqs 240 out of 950
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ywl_A Hypothetical UPF0213 pr 99.9 1.7E-25 5.9E-30 185.0 8.2 81 43-130 3-85 (96)
2 1zg2_A Hypothetical UPF0213 pr 99.9 5.4E-25 1.8E-29 185.2 9.0 80 44-130 5-84 (107)
3 1mk0_A Intron-associated endon 96.2 0.0046 1.6E-07 49.7 4.8 68 48-119 4-80 (97)
4 1yd6_A UVRC; DNA binding prote 95.4 0.039 1.3E-06 45.4 7.1 72 39-117 8-81 (99)
5 1yd0_A Uvrabc system protein C 94.9 0.046 1.6E-06 44.8 6.0 69 40-117 9-79 (96)
6 2wsh_A Endonuclease II; GIY-YI 61.2 6.8 0.00023 34.5 3.8 29 46-78 40-68 (143)
7 1ylx_A Hypothetical protein AP 14.7 44 0.0015 28.0 0.5 55 48-112 33-98 (103)
8 2lfv_A Protein DAMX; cell divi 9.6 98 0.0033 25.4 0.0 44 69-116 37-83 (106)
9 3iz6_X 40S ribosomal protein S 6.6 1.2E+02 0.0039 24.8 0.2 31 350-380 6-36 (86)
10 4dzn_A Coiled-coil peptide CC- 4.8 3.3E+02 0.011 18.3 1.5 9 108-116 18-26 (33)
No 1
>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural genomics, northeast structural genomics consortium (NESG); NMR {Enterococcus faecalis}
Probab=99.92 E-value=1.7e-25 Score=185.03 Aligned_cols=81 Identities=31% Similarity=0.385 Sum_probs=73.1
Q ss_pred CCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccc--cCCCeeEEEEEeccCCHHHHHHHHHHhcCC
Q 016815 43 QKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTK--KRRPWEMVLCIYGFPTNVSALQFEWAWQHP 120 (382)
Q Consensus 43 ~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr--~~rPWemV~ivegF~sKseALqfEwawK~p 120 (382)
...+||||||+|.+ |++|||+|+||.|||+|||+| +||+||+ +++||+||+ +++|+++++||+|||+||++
T Consensus 3 ~~~~~~vYIL~~~~----g~lY~G~T~dl~rRl~qHn~g--~ga~~T~~~~~~p~~LVy-~e~f~~~~~Al~rE~~iK~~ 75 (96)
T 1ywl_A 3 NKKSHYFYVLLCQD----GSFYGGYTTEPERRLTEHNSG--TGAKYTRLAKRRPVIMIH-TEKFETRSEATKAEAAFKKL 75 (96)
T ss_dssp SSSSEEEEEEECTT----CCCEEEEESCHHHHHHHHHHH--HSCSSCSSCCSSCCEEEE-EEEESSHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEEcCC----CCEEEEEeCCHHHHHHHHHcC--CCCCcccccCCCCeEEEE-EEecCCHHHHHHHHHHHHcC
Confidence 35678999999976 899999999999999999986 5899999 999999997 79999999999999999998
Q ss_pred CchhHHHHhh
Q 016815 121 MESLAVRQAA 130 (382)
Q Consensus 121 ~~sr~lr~~~ 130 (382)
.+..+++-+.
T Consensus 76 ~R~~K~~LI~ 85 (96)
T 1ywl_A 76 TRKQKEQYLK 85 (96)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 8877776553
No 2
>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans}
Probab=99.91 E-value=5.4e-25 Score=185.18 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=72.6
Q ss_pred CCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccccCCCeeEEEEEeccCCHHHHHHHHHHhcCCCch
Q 016815 44 KGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMES 123 (382)
Q Consensus 44 ~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~p~~s 123 (382)
+..||||||+|.+ |++|||+|+||.|||+|||+| +||+||++++||+||+ +++|+++++|++|||+||++.+.
T Consensus 5 ~~~~~VYIL~~~~----g~lY~G~T~dl~rRl~qH~~g--~ga~~T~~~~p~~LVy-~e~f~~~~~Al~rE~~iK~~~R~ 77 (107)
T 1zg2_A 5 PMNHYVYILECKD----GSWYTGYTTDVDRRIKKHASG--KGAKYTRGRGPFRLVA-TWAFPSKEEAMRWEYEVKHLSRR 77 (107)
T ss_dssp -CCEEEEEEECTT----SCEEEEEECCHHHHHHHHHHH--TTCCSCCCCSSCEEEE-EEEESCHHHHHHHHHHHHHSCHH
T ss_pred CCceEEEEEEcCC----CCEEEEEECCHHHHHHHHHcc--CCCCccccCCCCEEEE-EEecCCHHHHHHHHHHHhcCCHH
Confidence 4678999999976 899999999999999999986 5899999999999997 79999999999999999999888
Q ss_pred hHHHHhh
Q 016815 124 LAVRQAA 130 (382)
Q Consensus 124 r~lr~~~ 130 (382)
.+++-+.
T Consensus 78 ~K~~LI~ 84 (107)
T 1zg2_A 78 KKEQLVS 84 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
No 3
>1mk0_A Intron-associated endonuclease 1; alpha/beta fold, catalytic domain, DNA-binding surface, hydrolase; HET: CIT; 1.60A {Enterobacteria phage T4} SCOP: d.226.1.1 PDB: 1ln0_A
Probab=96.24 E-value=0.0046 Score=49.75 Aligned_cols=68 Identities=13% Similarity=0.303 Sum_probs=46.1
Q ss_pred EEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCC---CCCccccc----cC-CCeeEEEEEeccCC-HHHHHHHHHHhc
Q 016815 48 ACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI---RCGAVRTK----KR-RPWEMVLCIYGFPT-NVSALQFEWAWQ 118 (382)
Q Consensus 48 ~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~---~gGAk~Tr----~~-rPWemV~ivegF~s-KseALqfEwawK 118 (382)
+||++.+.. .|+.|||.|.|+..|+.+|.... .++.+... .+ .-..+.. .+.++. +.+...+|..|.
T Consensus 4 GIY~I~n~~---ngk~YIGst~~l~~R~~~~~~~l~~g~~~n~~L~~a~~kyG~~F~~~i-Le~~~~~~~el~~~E~~~i 79 (97)
T 1mk0_A 4 GIYQIKNTL---NNKVYVGSAKDFEKRWKRHFKDLEKGCHSSIKLQRSFNKHGNVFECSI-LEEIPYEKDLIIERANFWI 79 (97)
T ss_dssp EEEEEEETT---TCCEEEEEESSHHHHHHHHHHHHHHTCCSCHHHHHHHHHHSSCEEEEE-EEECCCCHHHHHHHHHHHH
T ss_pred EEEEEEECC---CCCEEEEecCCHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCcceEEEE-eeECCCCHHHHHHHHHHHH
Confidence 799999985 38999999999999999995311 11111111 11 3455543 566764 678888998887
Q ss_pred C
Q 016815 119 H 119 (382)
Q Consensus 119 ~ 119 (382)
.
T Consensus 80 ~ 80 (97)
T 1mk0_A 80 K 80 (97)
T ss_dssp H
T ss_pred H
Confidence 5
No 4
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=95.43 E-value=0.039 Score=45.41 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=49.8
Q ss_pred hhccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHH
Q 016815 39 AKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWA 116 (382)
Q Consensus 39 ~~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwa 116 (382)
..+..|.--+||+++-.+ ..-+|||-+.|+.+|+++|=.+. ...+++. ..-..+-+ ....+..+||-.|..
T Consensus 8 ~l~~lP~~pGVY~~~d~~---g~vlYVGKAknLr~Rv~syf~~~--~~~k~~~m~~~~~~i~~--~~t~sE~eAlllE~~ 80 (99)
T 1yd6_A 8 KLAVLPEQPGCYLMKDKH---GTVIYVGKAKSLKERVRSYFTGT--HDGKTQRLVEEIADFEY--IVTSSNAEALILEMN 80 (99)
T ss_dssp HHHTCCSSCEEEEEECSS---CCEEEEEEESCHHHHHHGGGSSC--CCHHHHHHHHHCSEEEE--EECSSHHHHHHHHHH
T ss_pred HHHhCCCCCeEEEEEcCC---CCEEEEecCcCHHHHHHHHcccC--CChHHHHHHHheeEEEE--EEECCHHHHHHHHHH
Confidence 345556677999999876 25799999999999999997542 2233432 12233443 244789999999977
Q ss_pred h
Q 016815 117 W 117 (382)
Q Consensus 117 w 117 (382)
|
T Consensus 81 l 81 (99)
T 1yd6_A 81 L 81 (99)
T ss_dssp H
T ss_pred H
Confidence 5
No 5
>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=94.89 E-value=0.046 Score=44.81 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=48.2
Q ss_pred hccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHHh
Q 016815 40 KDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAW 117 (382)
Q Consensus 40 ~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwaw 117 (382)
.+..|.--+||+.+- + ..-+|||-+.|+.+|+++|-.+. ..+++. ..-..+.++ -..+..+||-.|..|
T Consensus 9 l~~lP~~pGVY~~~d-~---g~vlYVGKAknLr~Rv~syf~~~---~~k~~~~~~~~~~i~~~--~t~sE~eAlllE~~l 79 (96)
T 1yd0_A 9 ILLAPEEPGVYIFKN-K---GVPIYIGKAKRLSNRLRSYLNPQ---TEKVFRIGEEADELETI--VVMNEREAFILEANL 79 (96)
T ss_dssp HHHCCSSCEEEEEEE-T---TEEEEEEEESSHHHHHHGGGSCS---SHHHHHHHHHCSEEEEE--ECSSHHHHHHHHHHH
T ss_pred HHhCCCCCeEEEEEC-C---CeEEEEecCcCHHHHHHHHccCC---CHHHHHHHHhccEEEEE--EECCHHHHHHHHHHH
Confidence 444566668999998 6 14799999999999999997532 233432 122344442 457899999999775
No 6
>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=61.25 E-value=6.8 Score=34.50 Aligned_cols=29 Identities=31% Similarity=0.348 Sum_probs=24.3
Q ss_pred ceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHH
Q 016815 46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQH 78 (382)
Q Consensus 46 fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQH 78 (382)
--+||+....+ .-+|||-+.|+.+|+++.
T Consensus 40 ~~GVY~~~~~g----~ViYVGKAknLkkRv~sY 68 (143)
T 2wsh_A 40 YNVIYAIAIND----ELVYIGKTKNLRKRINYY 68 (143)
T ss_dssp CSEEEEEEETT----EEEEEEEESCHHHHHHHH
T ss_pred CceEEEEEcCC----eEEEEEecccHhHHHHHh
Confidence 44688888643 589999999999999998
No 7
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=14.70 E-value=44 Score=28.04 Aligned_cols=55 Identities=18% Similarity=0.390 Sum_probs=30.6
Q ss_pred EEEEeeeCCCCCCCcEEEEecCCHHHH--------HHHHhCCCCCCccccccCCCeeEEE---EEeccCCHHHHHH
Q 016815 48 ACYLLTSLCPRFKGHTYIGFTVNPRRR--------IRQHNGEIRCGAVRTKKRRPWEMVL---CIYGFPTNVSALQ 112 (382)
Q Consensus 48 ~VYLL~S~d~r~~gs~YIG~T~Dp~RR--------LrQHNg~~~gGAk~Tr~~rPWemV~---ivegF~sKseALq 112 (382)
.+|==.-.. ++||+|+|++-.-+ +++|+|+ .+-...-|.+.- =..||.+-.+||+
T Consensus 33 gifEEeGeg----n~YY~GYTVkKdd~~~~ih~PfikdedG~------La~ekqeWTi~~d~~e~~Gy~sle~Al~ 98 (103)
T 1ylx_A 33 GIFEEHGEG----NRYYVGYTINKDDEMITIHMPFVKNERGE------LALEKQEWTVRKDGREKKGFHSLQEAME 98 (103)
T ss_dssp EEEEEECST----TEEEEEEEEEETTEEEEEEEEEEECTTSC------EEECCSCEEEEETTEEEEEECSHHHHHH
T ss_pred eeeeecCCC----ceEEEEEEEccCCeEEEEeccceecCCCc------eeeecceeEEecCCccccchhhHHHHHH
Confidence 444444444 89999999864433 2333332 233345565421 0357888888865
No 8
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=9.61 E-value=98 Score=25.37 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=28.9
Q ss_pred CCHHHHHHHHhCCCCCCccc--c-ccCCCeeEEEEEeccCCHHHHHHHHHH
Q 016815 69 VNPRRRIRQHNGEIRCGAVR--T-KKRRPWEMVLCIYGFPTNVSALQFEWA 116 (382)
Q Consensus 69 ~Dp~RRLrQHNg~~~gGAk~--T-r~~rPWemV~ivegF~sKseALqfEwa 116 (382)
.++..-+++|... +.+. | +...||-+|. +-.|+|+.+|.+.=..
T Consensus 37 ~~l~~f~~~~~l~---~~~v~~t~rnGk~WyvVl-yG~Y~s~~~A~~A~~~ 83 (106)
T 2lfv_A 37 DNLNGWAKKENLK---NYVVYETTRNGQPWYVLV-SGVYASKEEAKKAVST 83 (106)
Confidence 4566667777631 2322 2 2458998886 6799999999775444
No 9
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=6.57 E-value=1.2e+02 Score=24.80 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=1.5
Q ss_pred EEeccCCCCcccccccccccccccccceeec
Q 016815 350 VVDLLTPSPNCREMSYSKKRRVSGLYPVIID 380 (382)
Q Consensus 350 vidl~spsp~cr~~~~~kkrr~~~~~p~iid 380 (382)
-||||-|||+=--+-..+||=|..----|+|
T Consensus 6 ~~DLl~P~~e~e~~khK~k~Lv~~PnS~Fm~ 36 (86)
T 3iz6_X 6 DIDLLNPPAELEKLKHKKKRLVQSPNSFFMD 36 (86)
T ss_dssp ---------------------------CEEE
T ss_pred chhccCCCHHHHhhhhhheeeccCCCCcEeE
Confidence 3799999998665655666655443333333
No 10
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=4.76 E-value=3.3e+02 Score=18.27 Aligned_cols=9 Identities=56% Similarity=0.863 Sum_probs=5.6
Q ss_pred HHHHHHHHH
Q 016815 108 VSALQFEWA 116 (382)
Q Consensus 108 seALqfEwa 116 (382)
.+||+||.|
T Consensus 18 iaalkfeia 26 (33)
T 4dzn_A 18 IAALKFEIA 26 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456667654
Done!