BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016816
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 74 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 131
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 132 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 173
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 74 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 131
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 132 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 173
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI+E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 257 NYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEMMFKHG 316
N I +VY N T +LI E V G ++ D + K + E + + Q + + H
Sbjct: 75 NVITLHEVYEN-KTDVILIGELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHS 132
Query: 317 F--VHCD--PHAANLLVRPVPSEKKSILGKRKPQLILIDHGLYKELDATTKF 364
H D P LL R VP KP++ +ID GL ++D +F
Sbjct: 133 LQIAHFDLKPENIMLLDRNVP----------KPRIKIIDFGLAHKIDFGNEF 174
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 274 LIMEFVDGAQVNDVKSIRKLG-IDPHEVSRLVSQAFAEMMFKH--GFVHCDPHAANLLV 329
++ME+VDG + D+ + G + P +++ A + F H G +H D AN+L+
Sbjct: 93 IVMEYVDGVTLRDI--VHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANILI 149
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 274 LIMEFVDGAQVNDVKSIRKLG-IDPHEVSRLVSQAFAEMMFKH--GFVHCDPHAANLLV 329
++ME+VDG + D+ + G + P +++ A + F H G +H D AN+++
Sbjct: 93 IVMEYVDGVTLRDI--VHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMI 149
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 274 LIMEFVDGAQVNDVKSIRKLG-IDPHEVSRLVSQAFAEMMFKH--GFVHCDPHAANLLV 329
++ME+VDG + D+ + G + P +++ A + F H G +H D AN+++
Sbjct: 93 IVMEYVDGVTLRDI--VHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMI 149
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 274 LIMEFVDGAQVNDVKSIRKLG-IDPHEVSRLVSQAFAEMMFKH--GFVHCDPHAANLLV 329
++ME+VDG + D+ + G + P +++ A + F H G +H D AN+++
Sbjct: 93 IVMEYVDGVTLRDI--VHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMI 149
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 274 LIMEFVDGAQVNDVKSIRKLG-IDPHEVSRLVSQAFAEMMFKH--GFVHCDPHAANLLV 329
++ME+VDG + D+ + G + P +++ A + F H G +H D AN+++
Sbjct: 93 IVMEYVDGVTLRDI--VHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMI 149
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 274 LIMEFVDGAQVNDVKSIRKLG-IDPHEVSRLVSQAFAEMMFKH--GFVHCDPHAANLLV 329
++ME+VDG + D+ + G + P +++ A + F H G +H D AN+++
Sbjct: 110 IVMEYVDGVTLRDI--VHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMI 166
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 252 SPHIANYIYAPKVYWNLSTSKLLIMEFVDGAQVNDVKSIRKLGIDPHEVSRLVSQAFAEM 311
SPH+ Y + Y+ +T ++ME+ V+D+ +R + E++ ++ +
Sbjct: 83 SPHVVKYYGS---YFK-NTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGL 138
Query: 312 MFKHGF--VHCDPHAANLLV 329
+ H +H D A N+L+
Sbjct: 139 EYLHFMRKIHRDIKAGNILL 158
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 68 PEGSSERAKVKHEVHLRSARKLQELC---FKNGGIYIKLGQHIGQLEY 112
P+G+ E K + + L SA L+ LC K G Y+ GQ++ Q+ Y
Sbjct: 375 PDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIY 422
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,476,937
Number of Sequences: 62578
Number of extensions: 348374
Number of successful extensions: 897
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 23
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)