BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016817
(382 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224128396|ref|XP_002320319.1| predicted protein [Populus trichocarpa]
gi|222861092|gb|EEE98634.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/376 (70%), Positives = 317/376 (84%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MKSQLS + DE S L YCWWRSAAKFDECV+LKLDLP++++LTPRLRVL+E+ERLAL
Sbjct: 1 MKSQLSSNDEDECQLSRLGYCWWRSAAKFDECVRLKLDLPHIASLTPRLRVLKELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
IA +GLNELR+K YRSGDFW+P GG++K MDIPPVITILL+GFSGSGKSSLVNLMYS
Sbjct: 61 IAHEGLNELRYKLQMYRSGDFWVPTGGLKKEEMDIPPVITILLVGFSGSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
V RSGL+ FA+TSSG ++ TMYMEEHNVMRS+Q GFCVYDSRGFNY ++ + LEELS
Sbjct: 121 VFGRSGLIPFARTSSGGATKYTTMYMEEHNVMRSMQGGFCVYDSRGFNYGKIGDALEELS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
SWMS+G+HHNQ CLRS D L++ D E L+SS K+V R V+ MVV NIAE++KA KA
Sbjct: 181 SWMSDGIHHNQLCLRSGDDVLLEADTETVGLRSSSKFVQRTVNIPMVVVNIAEVHKASKA 240
Query: 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVY 300
DSKPL+AT+ LF +P LRKCNENPILILTHGD+L+TEER+D RL++CE LG+SE +GVY
Sbjct: 241 SDSKPLEATRELFHSPALRKCNENPILILTHGDLLTTEERMDMRLRLCERLGISETNGVY 300
Query: 301 DIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCMLCFIA 360
DIVCLTEYGF AEE DPVTAY++AEA+YRALLISDRGHSPKK +DWA+ +LS ++CF+
Sbjct: 301 DIVCLTEYGFLAEESDPVTAYALAEAVYRALLISDRGHSPKKNLQDWALFVLSWLMCFMG 360
Query: 361 SFLSLLADLCSRLGQR 376
+ S LADLCS+LGQR
Sbjct: 361 ALFSFLADLCSKLGQR 376
>gi|224068434|ref|XP_002302744.1| predicted protein [Populus trichocarpa]
gi|222844470|gb|EEE82017.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust.
Identities = 264/381 (69%), Positives = 319/381 (83%), Gaps = 1/381 (0%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MKSQ S + DE+ S L YCWWRSAAKFDECV+LK D+PN+++LTPR+RVLRE+ERLAL
Sbjct: 1 MKSQHSSNDEDEHQLSSLGYCWWRSAAKFDECVRLKSDIPNIASLTPRVRVLRELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
I+ +GLNE+R+K YRSGDFW+P GGI+K MDIPPVITILL+GFSGSGKSSLVNLMYS
Sbjct: 61 ISHEGLNEVRYKLQMYRSGDFWVPTGGIKKEEMDIPPVITILLVGFSGSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
VL RSGL+ FAQTSSG +S TMYMEEHNVMRSLQ GFCVYDSRGF+Y ++ + LEELS
Sbjct: 121 VLGRSGLIPFAQTSSGCASKYTTMYMEEHNVMRSLQGGFCVYDSRGFSYGKIGDALEELS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
SWMS+GVHHNQ CLRS D L+++DAE L+ S K+V R V+F+MVV NIAE+YKALKA
Sbjct: 181 SWMSDGVHHNQLCLRSGDDVLLEDDAETAGLRPSSKFVQRTVNFSMVVVNIAEVYKALKA 240
Query: 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVY 300
DSKPL+AT+ LF +PGLR CNENP+LILTHGD+L+TE+R+D R+K+CE LG+SE +GVY
Sbjct: 241 SDSKPLEATRELFHSPGLRNCNENPMLILTHGDLLTTEQRIDIRIKLCERLGISETNGVY 300
Query: 301 DIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCMLCFIA 360
DIVCLTEYGF AEE DPVTAY++ EA+YRALLI+DRGH PKK +DWAV + S ++C
Sbjct: 301 DIVCLTEYGFLAEESDPVTAYAVTEAVYRALLIADRGHFPKKNLQDWAVFLFSWLMCLTG 360
Query: 361 SFLSLLADLCSRLGQRGQKLK 381
+ + LADLCS+LG+R KLK
Sbjct: 361 ALFAFLADLCSKLGRR-DKLK 380
>gi|255548537|ref|XP_002515325.1| ATP binding protein, putative [Ricinus communis]
gi|223545805|gb|EEF47309.1| ATP binding protein, putative [Ricinus communis]
Length = 382
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 259/381 (67%), Positives = 319/381 (83%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MK+QLS + D+Y PS ++YCWWRS AKF+EC +LKL LPN+S+LTPR+RVLRE+ERLAL
Sbjct: 1 MKNQLSSSDEDDYPPSRMLYCWWRSTAKFEECARLKLGLPNISSLTPRIRVLRELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
I+ +GLNELR+K Y+SGD+W+P GGI+K MDIP VITILL+GFS SGKSSLVNLMYS
Sbjct: 61 ISHEGLNELRYKLQMYKSGDYWVPTGGIEKEEMDIPSVITILLVGFSSSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
VL R+GLV FAQTSSG + + TMYMEEHNVMRS+QSGFCV+DSRGFNY+++ E LEELS
Sbjct: 121 VLGRTGLVPFAQTSSGGAKNYTTMYMEEHNVMRSMQSGFCVFDSRGFNYDKIGEALEELS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
SWM++GVHHNQ CLRS D L+K+D E +SS K+++RRV+ AMVV NIAE+YKALKA
Sbjct: 181 SWMTDGVHHNQLCLRSGDATLLKDDIEAAASRSSSKFLIRRVNCAMVVVNIAEVYKALKA 240
Query: 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVY 300
GDSK L+AT+ LF +P LRKCNENPILILTHGD+L+ EER++ R+KICE LG+ E +GVY
Sbjct: 241 GDSKQLEATRELFCSPALRKCNENPILILTHGDLLTNEERIEGRIKICERLGIQETNGVY 300
Query: 301 DIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCMLCFIA 360
D+VCLTEYGF AEE DPVTAY++AEA+YRALLISDRGH P K F+DWA+ ILS ++ F+
Sbjct: 301 DVVCLTEYGFLAEESDPVTAYAVAEAVYRALLISDRGHFPSKKFQDWAIFILSWLMSFLG 360
Query: 361 SFLSLLADLCSRLGQRGQKLK 381
+ LA++C+ LGQR KLK
Sbjct: 361 IVFAFLAEICTALGQRRNKLK 381
>gi|359480106|ref|XP_003632400.1| PREDICTED: uncharacterized protein LOC100854991 [Vitis vinifera]
Length = 379
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/380 (63%), Positives = 304/380 (80%), Gaps = 1/380 (0%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MKSQ S D+Y+ LVYCWWRSA F E K K++LPNVSTLTP L++LRE+ERLAL
Sbjct: 1 MKSQFSSTYEDDYESLMLVYCWWRSAVTFGEAAKFKVELPNVSTLTPTLKLLRELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
+A +GL+ELR K +SYRSGDFW+P GG+++ MDIPPVITILL+GFSGSGKSSLVNLMYS
Sbjct: 61 MAREGLSELRQKLVSYRSGDFWVPTGGMKREDMDIPPVITILLVGFSGSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
VL RSGL+ FA TSS NS+ T +MEEHNV+RS+QSGFCVYDSRG +Y+ + E +EE+S
Sbjct: 121 VLGRSGLIPFATTSSENSAKCTTKFMEEHNVLRSMQSGFCVYDSRGLDYDLMGESIEEVS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
WM+ GVHHNQ CLR+ D LM + + SS K+ R+V+ AMVV NIAEI+K+LK
Sbjct: 181 EWMTNGVHHNQLCLRTGD-NLMSEEELSEVPGSSSKFTPRKVNCAMVVVNIAEIFKSLKK 239
Query: 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVY 300
GD KPL+AT+ LF P L+KCNENPILI+THGD+LSTEER+ RL +CE+LG+SE +GVY
Sbjct: 240 GDWKPLEATRELFRCPALKKCNENPILIMTHGDLLSTEERIKIRLTLCEFLGISETTGVY 299
Query: 301 DIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCMLCFIA 360
DIVCLTEYGF A+E DPVT+Y+++EA+YRALLISDRGH PK++ DW +L L+ ++C++A
Sbjct: 300 DIVCLTEYGFLADESDPVTSYALSEAVYRALLISDRGHIPKRSILDWTLLALALLMCYLA 359
Query: 361 SFLSLLADLCSRLGQRGQKL 380
+F LA+ S+LGQ+ +KL
Sbjct: 360 AFFEFLAEFFSKLGQKKKKL 379
>gi|297743947|emb|CBI36917.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/288 (63%), Positives = 233/288 (80%), Gaps = 1/288 (0%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVM 152
MDIPPVITILL+GFSGSGKSSLVNLMYSVL RSGL+ FA TSS NS+ T +MEEHNV+
Sbjct: 1 MDIPPVITILLVGFSGSGKSSLVNLMYSVLGRSGLIPFATTSSENSAKCTTKFMEEHNVL 60
Query: 153 RSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK 212
RS+QSGFCVYDSRG +Y+ + E +EE+S WM+ GVHHNQ CLR+ D LM + +
Sbjct: 61 RSMQSGFCVYDSRGLDYDLMGESIEEVSEWMTNGVHHNQLCLRTGD-NLMSEEELSEVPG 119
Query: 213 SSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHG 272
SS K+ R+V+ AMVV NIAEI+K+LK GD KPL+AT+ LF P L+KCNENPILI+THG
Sbjct: 120 SSSKFTPRKVNCAMVVVNIAEIFKSLKKGDWKPLEATRELFRCPALKKCNENPILIMTHG 179
Query: 273 DMLSTEERLDARLKICEYLGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALL 332
D+LSTEER+ RL +CE+LG+SE +GVYDIVCLTEYGF A+E DPVT+Y+++EA+YRALL
Sbjct: 180 DLLSTEERIKIRLTLCEFLGISETTGVYDIVCLTEYGFLADESDPVTSYALSEAVYRALL 239
Query: 333 ISDRGHSPKKTFRDWAVLILSCMLCFIASFLSLLADLCSRLGQRGQKL 380
ISDRGH PK++ DW +L L+ ++C++A+F LA+ S+LGQ+ +KL
Sbjct: 240 ISDRGHIPKRSILDWTLLALALLMCYLAAFFEFLAEFFSKLGQKKKKL 287
>gi|449464106|ref|XP_004149770.1| PREDICTED: uncharacterized protein LOC101208586 [Cucumis sativus]
gi|449520910|ref|XP_004167475.1| PREDICTED: uncharacterized protein LOC101225331 [Cucumis sativus]
Length = 436
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 161/312 (51%), Gaps = 26/312 (8%)
Query: 48 RLRVLREM----ERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILL 103
R RV RE+ ++L I + LN+ + K LSY G + +GG++ DIP +++L
Sbjct: 84 RNRVHREIIESYDQLR-IRSENLNQAKQKILSYSPGAWIEQVGGMKLSDYDIPQTTSLIL 142
Query: 104 MGFSGSGKSSLVNLMYSVLSRSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162
+G GSGKSSL+N + V AQ S +S T ++ E+ ++R +S FC+Y
Sbjct: 143 IGPKGSGKSSLINRISKVFEEDHFAPERAQVSCNSSGEDGTFFLHEYMILRKSKS-FCLY 201
Query: 163 DSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK-YVLRR 221
D+RG + N + +E L WMS+GVHH + R D + + N +S P+ V+R
Sbjct: 202 DTRGLS-NDPSDNIEMLKQWMSKGVHHGKLVTRKSDASSLINRMRCKARQSFPRSRVVRI 260
Query: 222 VDFAMVVSNIAEIYKALKAGDSKPLDATKRL---FSAPGLRKCNENPILILTHGDMLSTE 278
++F + V + + K++ GD K D + + F+ P L ++ P+++LTHGD+LS
Sbjct: 261 INFVIFVVDGLSVLKSID-GDDKQKDYDRVITTAFNCPYLSYGDDKPVVVLTHGDLLSFA 319
Query: 279 ERLDARLKICEYLGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGH 338
E + R + LG+ ++DI + DPVT +I + ++ L +D+
Sbjct: 320 ENVRVRGHLGNLLGIPSTKQIFDI---------PDRYDPVTELTIIDMLHYCLEHADKNL 370
Query: 339 SPKKTFRDWAVL 350
PK+ W V+
Sbjct: 371 PPKR----WTVI 378
>gi|168027995|ref|XP_001766514.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682159|gb|EDQ68579.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 524
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 129/242 (53%), Gaps = 2/242 (0%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
+ E+R K Y G + + GG++K IP V T+L++G G+GKS+L+N + VL+
Sbjct: 185 IEEMRLKLQRYEPGQWLVESGGMRKSDFAIPEVTTLLVVGSMGAGKSTLINNLIRVLNNK 244
Query: 126 GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
G+ T ++ E+ + S ++ CV+DSRG +V +GLE L WM +
Sbjct: 245 SQDFDRAQVCGDPGENGTYFLNEYMLNES-KNNICVFDSRGMPELKVADGLEVLEDWMVK 303
Query: 186 GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR-VDFAMVVSNIAEIYKALKAGDSK 244
GV H Q +R+ D + +K E + K +R ++F + V N ++K +GD+
Sbjct: 304 GVRHGQMVIRTSDSSRVKEAVERKARQGHHKLSKKRHINFVIFVINATTVHKIRHSGDTL 363
Query: 245 PLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVYDIVC 304
R+F P + ++ P++++THGD LS ++RL AR+ + LGVS + V+DI
Sbjct: 364 SRPNFLRIFKFPLITFKDDRPVVVMTHGDELSEDDRLAARIYLGNLLGVSPVDHVFDIAG 423
Query: 305 LT 306
T
Sbjct: 424 FT 425
>gi|255580517|ref|XP_002531083.1| ATP binding protein, putative [Ricinus communis]
gi|223529329|gb|EEF31297.1| ATP binding protein, putative [Ricinus communis]
Length = 419
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 154/310 (49%), Gaps = 23/310 (7%)
Query: 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123
+ L+E + K LSY G + +GG++ ++P T+LL+G GSGKSSLVN + V
Sbjct: 93 ESLDEAKSKILSYTPGGWKEKVGGMKLSDYNVPKTTTLLLVGPRGSGKSSLVNRISKVFD 152
Query: 124 RSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW 182
AQ S S+ T +++E+ ++ + FC+YD+RGF ++ ++ +E L W
Sbjct: 153 DDKFAPERAQVSYNPSAGEGTYFLQEY-MIPGCSTSFCLYDTRGF-FDNSYDNIEMLKYW 210
Query: 183 MSEGVHHNQRCLRS-DDCAL---MKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKAL 238
M+ GV H + +R DD +L MK + +S R V+F + V N + K++
Sbjct: 211 MTRGVCHGELTVRKCDDSSLRTRMKCKVRYNGSQSKKN---RTVNFVIFVVNGLAVLKSM 267
Query: 239 KAGDSKP---LDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSE 295
+ K D F+ P ++ P++++THGD+LS +R R+ + E LG+
Sbjct: 268 GSEVEKGNQYTDMIASAFNCPYASFKDDKPVVVVTHGDLLSLSDRTRIRVHLGELLGIPP 327
Query: 296 ISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCM 355
++DI E CDPVT +I + + +L +D + P+ T + ++ +
Sbjct: 328 AKQIFDI---------PESCDPVTELTIIDMLRYSLEHAD-NNLPQDTVAEKVHRVIGSL 377
Query: 356 LCFIASFLSL 365
+ F+ L
Sbjct: 378 YACVHLFIML 387
>gi|42566738|ref|NP_193039.3| P-loop containing nucleoside triphosphate hydrolase
domain-containing protein [Arabidopsis thaliana]
gi|332657819|gb|AEE83219.1| P-loop containing nucleoside triphosphate hydrolase
domain-containing protein [Arabidopsis thaliana]
Length = 481
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 146/297 (49%), Gaps = 20/297 (6%)
Query: 51 VLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSG 110
+L+ + L + L + R++ LSY G + ++ +IP +I+L+G G+G
Sbjct: 63 ILQSHDLLLRTSKRKLRQARNEILSYTPGSW----SDVKLSDYNIPKTTSIMLVGPKGAG 118
Query: 111 KSSLVNLMYSVLSRSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169
KSSLVN + V+ +L AQ S G S T +++E+ + R + FC+YD+RG +
Sbjct: 119 KSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFCLYDTRGLSR 178
Query: 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229
+ + WM+ GV H + + + D + +K D I D Y R+V+ + V
Sbjct: 179 ISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLK-DRLIRD--GGTGYERRKVNSIIFVV 235
Query: 230 NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289
N EI K+++ S T F++P L ++ P +++THGDMLS EER R+ + E
Sbjct: 236 NAVEILKSMECETSYASMITT-AFNSPILLFKDDKPAVVMTHGDMLSREERARVRVFLGE 294
Query: 290 YLGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHS--PKKTF 344
LG+ ++DI E D TA +I + +L +D+ PKK F
Sbjct: 295 LLGIPPHKQIFDI---------PESRDTATAITICNLLCYSLQHADKNFVFLPKKNF 342
>gi|42570140|ref|NP_849371.2| P-loop containing nucleoside triphosphate hydrolase
domain-containing protein [Arabidopsis thaliana]
gi|332657820|gb|AEE83220.1| P-loop containing nucleoside triphosphate hydrolase
domain-containing protein [Arabidopsis thaliana]
Length = 479
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 146/297 (49%), Gaps = 20/297 (6%)
Query: 51 VLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSG 110
+L+ + L + L + R++ LSY G + ++ +IP +I+L+G G+G
Sbjct: 61 ILQSHDLLLRTSKRKLRQARNEILSYTPGSW----SDVKLSDYNIPKTTSIMLVGPKGAG 116
Query: 111 KSSLVNLMYSVLSRSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169
KSSLVN + V+ +L AQ S G S T +++E+ + R + FC+YD+RG +
Sbjct: 117 KSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFCLYDTRGLSR 176
Query: 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229
+ + WM+ GV H + + + D + +K D I D Y R+V+ + V
Sbjct: 177 ISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLK-DRLIRD--GGTGYERRKVNSIIFVV 233
Query: 230 NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289
N EI K+++ S T F++P L ++ P +++THGDMLS EER R+ + E
Sbjct: 234 NAVEILKSMECETSYASMITT-AFNSPILLFKDDKPAVVMTHGDMLSREERARVRVFLGE 292
Query: 290 YLGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHS--PKKTF 344
LG+ ++DI E D TA +I + +L +D+ PKK F
Sbjct: 293 LLGIPPHKQIFDI---------PESRDTATAITICNLLCYSLQHADKNFVFLPKKNF 340
>gi|357505167|ref|XP_003622872.1| hypothetical protein MTR_7g055730 [Medicago truncatula]
gi|355497887|gb|AES79090.1| hypothetical protein MTR_7g055730 [Medicago truncatula]
Length = 487
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 149/315 (47%), Gaps = 34/315 (10%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L + + K L YR G + G++ D+P +++L+G SGSGKSSL+N + V
Sbjct: 92 LKQAKEKILRYRPGTWIEKARGLKLRDYDVPETTSLILVGPSGSGKSSLINRISKVFDDD 151
Query: 126 GLVLFAQTSSGNSSHTI----TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSS 181
FA T + S +++ T ++ EH + R S C+YD+R + N+ HE E L +
Sbjct: 152 K---FAPTRAQVSYNSLRGDGTYFLREHMIPRDSNS-ICLYDTRSLS-NKSHENNEMLKN 206
Query: 182 WMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL----RRVDFAMVVSNIAEIYKA 237
WM+EGVHH + +RS D + E K + K R+V+F + V N +
Sbjct: 207 WMTEGVHHGELVIRSKDNQTL---TESLKCKGNKKGFFSSKSRKVNFVIYVLNGLSVLNM 263
Query: 238 LKAGDS-------KPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290
++ D + + +T F+ P L ++ P+L+LTHGD+LS +R R+ + E
Sbjct: 264 MENADGAFKARYIEEIVSTFN-FNNPFLSFKDDKPVLVLTHGDLLSLSDRARVRVYLGEV 322
Query: 291 LGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVL 350
LG+ ++DI ECD + S + R L + P+KT V
Sbjct: 323 LGIPPTKQIFDI----------PECDDLVTESAIIGMLRYTLEHADNNIPQKTNVMNKVH 372
Query: 351 ILSCMLCFIASFLSL 365
+S L I L++
Sbjct: 373 KISLSLFMILMMLAI 387
>gi|297790788|ref|XP_002863279.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp.
lyrata]
gi|297309113|gb|EFH39538.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp.
lyrata]
Length = 479
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 139/282 (49%), Gaps = 20/282 (7%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L + R++ L Y G + ++ D+P +I+L+G G+GKSSLVN + V+
Sbjct: 77 LRQARNEILRYTPGSW----SDVKLSDYDVPKTTSIMLVGPKGAGKSSLVNKISRVIEDD 132
Query: 126 GLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS 184
AQ S G S T +++E+ + R + FC+YD+RG ++ + + WM+
Sbjct: 133 EFFPARAQESFGTQSKGGTFFVQEYMIPRGGSASFCLYDTRGLSHISSSDNTRMIEQWMT 192
Query: 185 EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSK 244
+GVHH + + + D + +K D I D Y R+V+ + V N EI K+++ ++
Sbjct: 193 KGVHHGEPVIWTSDSSDLK-DRLIRD--GGTGYERRKVNSVIFVINAVEILKSMEC-ETS 248
Query: 245 PLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVYDIVC 304
F+ P L ++ P +++THGDMLS E+R R+ + E LG+ ++DI
Sbjct: 249 YAHMISTAFNCPLLSFKDDKPAVVMTHGDMLSLEDRARVRVFLGELLGIPPAKQIFDI-- 306
Query: 305 LTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHS--PKKTF 344
E D TA +I + +L +D+ PK+ F
Sbjct: 307 -------PESRDIATALTICNLLCYSLDHADKNFVFLPKRNF 341
>gi|225470035|ref|XP_002265228.1| PREDICTED: uncharacterized protein LOC100246086 [Vitis vinifera]
gi|297741779|emb|CBI33051.3| unnamed protein product [Vitis vinifera]
Length = 384
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 159/328 (48%), Gaps = 27/328 (8%)
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPI-GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY 119
I + L + + + LSY G WI + GG++ ++P +++L+G GSGKSSL+N +
Sbjct: 47 IRTNALEKAKSRILSYTPGA-WIEMSGGMKFSDYNVPETTSLILVGPKGSGKSSLINKIS 105
Query: 120 SVLSRSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEE 178
V AQ S S T +++E+ + R + FC+YD+RG + + + ++
Sbjct: 106 RVFEDDKFAPERAQVSYNLSVGDGTYFLQEYMIPRG-STSFCLYDTRGLS-DVSSDNMQM 163
Query: 179 LSSWMSEGVHHNQRCLRSDDC----ALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEI 234
L W+++GV H + +R+ D A MK A SS R V+F + V N +
Sbjct: 164 LKHWITKGVRHGELAIRNSDSPSIRARMKCKARQSGYNSSKT---RLVNFVIFVVNGLSV 220
Query: 235 YKALKAGDSKP----LDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290
K++ + D + +F P L ++ P++++THGD+LS +R R+ + E+
Sbjct: 221 LKSIDSCDDGASQFYIQTIAEMFCCPYLSFRDDMPVVVVTHGDLLSLSDRARVRVHLGEH 280
Query: 291 LGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWA-- 348
LG+S ++DI E C T +I + + +L +DR K F D
Sbjct: 281 LGISPGKQIFDI---------PESCGKATELTIIDMLRYSLEHADRNLPCKGWFLDKGRV 331
Query: 349 VLILSCMLCFIASFLSLLADLCSRLGQR 376
V +++C+ I +LS+ + R+ R
Sbjct: 332 VPLMACIFLLIILWLSVASTHIYRVHMR 359
>gi|224069876|ref|XP_002303066.1| predicted protein [Populus trichocarpa]
gi|222844792|gb|EEE82339.1| predicted protein [Populus trichocarpa]
Length = 575
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 139/280 (49%), Gaps = 22/280 (7%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L E + K LSY G + + G++ D+P +L++G GSGKSSL+N + V
Sbjct: 123 LEEGKSKILSYTPGGWMENVIGMKLSDFDVPNTTVLLVIGPKGSGKSSLINRISKVFEDD 182
Query: 126 GLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS 184
AQ S +S+ T +++E+ + RS S FC+YD+RG +Y+ ++ L +W++
Sbjct: 183 KFASERAQVSYNSSAADGTYFLQEYMIPRS-SSSFCLYDTRGLSYDS-YDSANMLKNWIT 240
Query: 185 EGVHHNQRCLRSDDCALMKND----AEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
+GVHH + +R D + ++N A + +S R V F + V + + K++
Sbjct: 241 KGVHHRELIIRPSDNSHLRNQMKCKARGNGCQSK---ETRMVTFVIFVVDGLAVLKSMDN 297
Query: 241 ---GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEIS 297
K + F P + ++ P++++THGD+LS +R R+ + E LG+
Sbjct: 298 LVDEGKKYTQMIAKTFDCPYISFNDDKPVVVVTHGDLLSLNDRARVRVHLGELLGIPPAK 357
Query: 298 GVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRG 337
++DI E DPVT +I ++ +L +D+
Sbjct: 358 QIFDI---------PESHDPVTELTIVNMLHYSLEHADKN 388
>gi|226502704|ref|NP_001150449.1| ATP binding protein [Zea mays]
gi|195639348|gb|ACG39142.1| ATP binding protein [Zea mays]
Length = 375
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 126/240 (52%), Gaps = 6/240 (2%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L E + Y+ GD+ +GG + G +P V T+LL+G GSGKS+LVN + V +
Sbjct: 59 LREAKEFIRRYKPGDWIEGVGGAKAGHFVLPEVTTLLLVGPRGSGKSTLVNRITRVFDKD 118
Query: 126 GLVLFAQTS--SGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM 183
+ S NS TM++ E+ + R+ S C+YD+RG++ N + + + L WM
Sbjct: 119 DDPFAPDRAQVSCNSKSNGTMFLREYPIPRN-SSAVCIYDTRGWS-NDLEKNFKMLHQWM 176
Query: 184 SEGVHHNQRCLRSDDCA-LMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGD 242
++G+ H + + DD + N + S +Y +R+V+F + V + + +++ +
Sbjct: 177 TKGISHGETTMWDDDEGNKIGNMKPLGRQYSFLRYKIRKVNFVIFVVDGVAVLESMDDSN 236
Query: 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVYDI 302
+ ++ F P L ++ P++++THGD LS ++R+ + ++ E L + +YDI
Sbjct: 237 KGYTEILRQTFMYPFLSIGDDKPVVVVTHGDRLSIQQRVHVQAELAELLDIPA-QQIYDI 295
>gi|413941832|gb|AFW74481.1| ATP binding protein [Zea mays]
Length = 419
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 125/240 (52%), Gaps = 6/240 (2%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L E + Y+ GD+ +G + G +P V T+LL+G GSGKS+LVN + V +
Sbjct: 103 LREAKEFIRRYKPGDWIEGVGSAKAGHFVLPEVTTLLLVGPRGSGKSTLVNRITRVFDKD 162
Query: 126 GLVLFAQTS--SGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM 183
+ S NS TM++ E+ + R+ S C+YD+RG++ N + + + L WM
Sbjct: 163 DDPFAPDRAQVSCNSKSNGTMFLREYPIPRN-SSAVCIYDTRGWS-NDLEKNFKMLHQWM 220
Query: 184 SEGVHHNQRCLRSDDCA-LMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGD 242
++G+ H + + DD + N + S +Y +R+V+F + V + + +++ +
Sbjct: 221 TKGISHGETTMWDDDEGNKIGNMKPLGRQYSFLRYKIRKVNFVLFVVDGVAVLESMDDSN 280
Query: 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVYDI 302
+ ++ F P L ++ P++++THGD LS ++R+ + ++ E L + +YDI
Sbjct: 281 KGYTEILRQTFMYPFLSIGDDKPVVVVTHGDRLSIQQRVHVQAELAELLDIPA-QQIYDI 339
>gi|388500938|gb|AFK38535.1| unknown [Medicago truncatula]
Length = 474
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 133/289 (46%), Gaps = 18/289 (6%)
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
I L E + K LSYR G + G++ D+P +LL+G SGSGKSSL+N +
Sbjct: 93 IDSKNLKEAKEKILSYRPGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISK 152
Query: 121 VLSRSGLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEEL 179
V AQ S + T ++ E+ + R S C+YD+R + + HE + L
Sbjct: 153 VFDEDKFAPARAQVSYNSIRGNGTCFLREYMIPRDSNS-ICLYDTRSLS-DDSHENNKML 210
Query: 180 SSWMSEGVHHNQRCLRS-DDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN----IAEI 234
+WM++GV H + R DD L KN D K R+V++ + V N + I
Sbjct: 211 KNWMTKGVRHGELVARGMDDKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVI 270
Query: 235 YKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVS 294
A A + + F+ P L ++ P+L+LTHGD+LS +R R + E LG+
Sbjct: 271 ENAGGALEEWYIQQIVSTFNCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIP 330
Query: 295 EISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKT 343
++DI +CD + S + R L G+ P+K+
Sbjct: 331 PTKQIFDI----------PDCDDLVTESAIVGMLRYTLEHADGNFPQKS 369
>gi|356567802|ref|XP_003552104.1| PREDICTED: uncharacterized protein LOC100783278 [Glycine max]
Length = 429
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 144/293 (49%), Gaps = 25/293 (8%)
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
I L + K L Y+ G + GG++ D+P +LL+G GSGKSSL+N +
Sbjct: 91 IHSKDLKREKQKILRYKPGAWIEKAGGLKISDYDVPKTTCLLLVGPRGSGKSSLINRISK 150
Query: 121 VLSRSGLVLFAQTSSGNSSHTI----TMYMEEHNVMRSLQSGFCVYDSRGFNYN-RVHEG 175
V+ FA + S +++ T +++E+ + R S C+YD+R + N E
Sbjct: 151 VVEDD---RFAPARAQESYNSLLGDGTSFLQEYMIPRYSNS-ICLYDTRSLSDNSEKDEN 206
Query: 176 LEELSSWMSEGVHHNQRCLR-SDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEI 234
+ L SWM++GVHH + +R +D+ L K+ K R+V+F + V N +
Sbjct: 207 IRMLKSWMTKGVHHGELVVRKTDNQRLRKSLKGKAHKKGYLSSKTRKVNFVIYVVNGLLV 266
Query: 235 YKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYL 291
KA++ A +++ + + F+ P L ++ P+L+ THGD+LS ER R + L
Sbjct: 267 LKAMENDGALETQCVQSIVSTFNCPFLSFKDDKPVLVFTHGDLLSFSERALVREHLGTLL 326
Query: 292 GVSEISGVYDIVCLTEYGFPAEECD-PVTAYSIAEAIYRALLISDRGHSPKKT 343
G+ ++DI +CD P T +I + +L +DR H P+++
Sbjct: 327 GIPPTKQIFDI----------PDCDCPATESAIIGMLRYSLAHADR-HFPQRS 368
>gi|357505165|ref|XP_003622871.1| hypothetical protein MTR_7g055720 [Medicago truncatula]
gi|355497886|gb|AES79089.1| hypothetical protein MTR_7g055720 [Medicago truncatula]
Length = 475
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 133/289 (46%), Gaps = 18/289 (6%)
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
I L E + K LSYR G + G++ D+P +LL+G SGSGKSSL+N +
Sbjct: 93 IDSKNLKEAKEKILSYRPGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISK 152
Query: 121 VLSRSGLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEEL 179
V AQ S + T ++ E+ + R S C+YD+R + + HE + L
Sbjct: 153 VFDEDKFAPARAQVSYNSIRGNGTCFLREYMIPRDSNS-ICLYDTRSLS-DDSHENNKML 210
Query: 180 SSWMSEGVHHNQRCLRS-DDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN----IAEI 234
+WM++GV H + R DD L KN D K R+V++ + V N + I
Sbjct: 211 KNWMTKGVRHGELVARGMDDKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVI 270
Query: 235 YKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVS 294
A A + + F+ P L ++ P+L+LTHGD+LS +R R + E LG+
Sbjct: 271 ENAGGALEEWYIQQIVSTFNCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIP 330
Query: 295 EISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKT 343
++DI +CD + S + R L G+ P+K+
Sbjct: 331 PTKQIFDI----------PDCDDLVTESAIVGMLRYTLEHADGNFPQKS 369
>gi|33589692|gb|AAQ22612.1| At4g13030 [Arabidopsis thaliana]
Length = 372
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 16/246 (6%)
Query: 102 LLMGFSGSGKSSLVNLMYSVLSRSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFC 160
+L+G G+GKSSLVN + V+ +L AQ S G S T +++E+ + R + FC
Sbjct: 1 MLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFC 60
Query: 161 VYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220
+YD+RG + + + WM+ GV H + + + D + +K D I D Y R
Sbjct: 61 LYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLK-DRLIRD--GGTGYERR 117
Query: 221 RVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280
+V+ + V N EI K+++ S T F++P L ++ P +++THGDMLS EER
Sbjct: 118 KVNSIIFVVNAVEILKSMECETSYASMITT-AFNSPILLFKDDKPAVVMTHGDMLSREER 176
Query: 281 LDARLKICEYLGVSEISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHS- 339
R+ + E LG+ ++DI E D TA +I + +L +D+
Sbjct: 177 ARVRVFLGELLGIPPHKQIFDI---------PESRDTATAITICNLLCYSLQHADKNFVF 227
Query: 340 -PKKTF 344
PKK F
Sbjct: 228 LPKKNF 233
>gi|414869394|tpg|DAA47951.1| TPA: hypothetical protein ZEAMMB73_985826 [Zea mays]
Length = 341
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 123/231 (53%), Gaps = 6/231 (2%)
Query: 76 YRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTS- 134
Y+ GD+ +GG + G +P V T+LL+G GS KS+LVN + V + +
Sbjct: 35 YKPGDWIEGVGGAKAGHFVLPEVTTLLLVGPRGSVKSTLVNRITRVFDKDDDPFAPDRAQ 94
Query: 135 -SGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRC 193
S NS TM++ E+ + R+ S C+YD+RG++ N + + + L WM++G+ H +
Sbjct: 95 VSCNSQSNGTMFLREYPIPRN-SSAVCIYDTRGWS-NDLEKNFKMLHQWMTKGISHGETT 152
Query: 194 LRSDDCA-LMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRL 252
+ DD + N + S +Y + +V+F + V + + +++ + + ++
Sbjct: 153 MWDDDEGNKIGNMKPLGRQYSFLRYKIWKVNFVIFVVDGVAVLESMDDSNKGYTEILRQT 212
Query: 253 FSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVYDIV 303
F P L ++ P++++THGD LS ++R+ + ++ E L + + +YDI+
Sbjct: 213 FMYPFLSIGDDKPVVVVTHGDRLSIQQRVHVQAELAELLDIP-VQQIYDIL 262
>gi|218196465|gb|EEC78892.1| hypothetical protein OsI_19263 [Oryza sativa Indica Group]
Length = 367
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 125/252 (49%), Gaps = 18/252 (7%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L E + Y+ GD + G + G +P + T LL+G +GKS+LVN + V +
Sbjct: 51 LREAKELIRRYKPGDLVEGVCGTKSGDYVLPDITTFLLVGPRDAGKSALVNRITRVFDKD 110
Query: 126 GLVLFAQTS--SGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG-LEELSSW 182
+ S NS T T ++ E+ V R+ S C+YD+R + N HE + L W
Sbjct: 111 DDPDAPDRAQVSCNSKSTGTSFLREYRVPRNSNS-ICIYDTRSLSNN--HENNFKMLQRW 167
Query: 183 MSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV------LRRVDFAMVVSNIAEIYK 236
M++G+ H +D N ++I ++KS + R+V+F + V N A + +
Sbjct: 168 MTKGLSHGDIITWDND-----NYSKIQNIKSMGRQYSFLRCKTRKVNFVIFVVNGASVLE 222
Query: 237 ALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEI 296
+++ + +D + F P L ++ P +++THGD L+ ++R+ R ++ E LG+ +
Sbjct: 223 SIENNNKNYIDMLHKTFMYPFLSFGDDKPAVVVTHGDRLTAQQRMHVRNELVELLGIP-L 281
Query: 297 SGVYDIVCLTEY 308
++DI +Y
Sbjct: 282 QQIFDISGCDDY 293
>gi|115462943|ref|NP_001055071.1| Os05g0274300 [Oryza sativa Japonica Group]
gi|50878346|gb|AAT85121.1| unknown protein [Oryza sativa Japonica Group]
gi|113578622|dbj|BAF16985.1| Os05g0274300 [Oryza sativa Japonica Group]
gi|222630935|gb|EEE63067.1| hypothetical protein OsJ_17875 [Oryza sativa Japonica Group]
Length = 382
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 126/253 (49%), Gaps = 20/253 (7%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L E + Y+ GD + G + G +P + T LL+G +GKS+LVN + V +
Sbjct: 66 LREAKELIRRYKPGDLVEGVCGTKSGDYVLPDITTFLLVGPRDAGKSALVNRITRVFDKD 125
Query: 126 GLVLF---AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG-LEELSS 181
AQ S NS T T ++ E+ V R+ S C+YD+R + N HE + L
Sbjct: 126 DDPDAPDRAQVSC-NSKSTGTSFLREYRVPRNSNS-ICIYDTRSLSNN--HENNFKMLQR 181
Query: 182 WMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV------LRRVDFAMVVSNIAEIY 235
WM++G+ H +D N ++I ++KS + R+V+F + V N A +
Sbjct: 182 WMTKGLSHGDIITWDND-----NYSKIQNIKSMGRQYSFLRCKTRKVNFVIFVVNGASVL 236
Query: 236 KALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSE 295
++++ + +D + F P L ++ P +++THGD L+ ++R+ R ++ E LG+
Sbjct: 237 ESIENNNKNYIDMLHKTFMYPFLSFGDDKPAVVVTHGDRLTAQQRMHVRNELVELLGIP- 295
Query: 296 ISGVYDIVCLTEY 308
+ ++DI +Y
Sbjct: 296 LQQIFDISGCDDY 308
>gi|46200523|gb|AAS82599.1| hypothetical protein S250_18C08.34 [Sorghum bicolor]
Length = 301
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 128/260 (49%), Gaps = 12/260 (4%)
Query: 50 RVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGS 109
R LRE + L E++ Y+ GD+ +GG + G +P + T+LL+G GS
Sbjct: 42 RQLREAKEFHFNRQ--LREVKELIRRYKPGDWVEGVGGAKAGHFLLPEITTLLLVGPRGS 99
Query: 110 GKSSLVNLMYSVLSRSGLVLFAQTS--SGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167
GKS+LVN + V + + S NS+ T+++ E+ + R+ S C+YD+ G+
Sbjct: 100 GKSTLVNRITRVFDKDDDPFAPDRAQVSCNSTSNRTIFLHEYPIPRN-SSAICIYDTCGW 158
Query: 168 NYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE-IDDLKSSPKYVLRRVDFAM 226
+ N + + L WM++G+ H + + +D + + S +Y+ R+V+F +
Sbjct: 159 S-NDPKKNFKMLHQWMTKGISHGETIMWDNDEGNKTGGIKPLGRQYSFLRYITRKVNFVI 217
Query: 227 VVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286
V + + +++ + + + + F P L ++ P++++THGD LS ++ + +
Sbjct: 218 FVVDGVAVLESIDSNNKGYTEILHQTFMYPFLSIGDDKPVVVVTHGDRLSIQQCAHVQNE 277
Query: 287 ICEYLGVS-----EISGVYD 301
+ E L + I GV D
Sbjct: 278 LTELLNIPAQQIYAIPGVVD 297
>gi|242078087|ref|XP_002443812.1| hypothetical protein SORBIDRAFT_07g002570 [Sorghum bicolor]
gi|241940162|gb|EES13307.1| hypothetical protein SORBIDRAFT_07g002570 [Sorghum bicolor]
Length = 394
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 119/231 (51%), Gaps = 5/231 (2%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L E++ Y+ GD+ +GG + G +P + T+LL+G GSGKS+LVN + V +
Sbjct: 83 LREVKELIRRYKPGDWVEGVGGAKAGHFLLPEITTLLLVGPRGSGKSTLVNRITRVFDKD 142
Query: 126 GLVLFAQTS--SGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM 183
+ S NS+ T+++ E+ + R+ S C+YD+ G++ N + + L WM
Sbjct: 143 DDPFAPDRAQVSCNSTSNRTIFLHEYPIPRN-SSAICIYDTCGWS-NDPKKNFKMLHQWM 200
Query: 184 SEGVHHNQRCLRSDDCALMKNDAE-IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGD 242
++G+ H + + +D + + S +Y+ R+V+F + V + + +++ + +
Sbjct: 201 TKGISHGETIMWDNDEGNKTGGIKPLGRQYSFLRYITRKVNFVIFVVDGVAVLESIDSNN 260
Query: 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGV 293
+ + F P L ++ P++++THGD LS ++ + ++ E L +
Sbjct: 261 KGYTEILHQTFMYPFLSIGDDKPVVVVTHGDRLSIQQCAHVQNELTELLNI 311
>gi|5123944|emb|CAB45502.1| putative protein [Arabidopsis thaliana]
gi|7268005|emb|CAB78345.1| putative protein [Arabidopsis thaliana]
Length = 360
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 5/191 (2%)
Query: 102 LLMGFSGSGKSSLVNLMYSVLSRSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFC 160
+L+G G+GKSSLVN + V+ +L AQ S G S T +++E+ + R + FC
Sbjct: 1 MLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFC 60
Query: 161 VYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220
+YD+RG + + + WM+ GV H + + + D + +K D I D Y R
Sbjct: 61 LYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLK-DRLIRD--GGTGYERR 117
Query: 221 RVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280
+V+ + V N EI K+++ S T F++P L ++ P +++THGDMLS EER
Sbjct: 118 KVNSIIFVVNAVEILKSMECETSYASMITT-AFNSPILLFKDDKPAVVMTHGDMLSREER 176
Query: 281 LDARLKICEYL 291
R+ + E L
Sbjct: 177 ARVRVFLGELL 187
>gi|388520931|gb|AFK48527.1| unknown [Lotus japonicus]
Length = 210
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 48 RLRVLREM----ERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILL 103
RLRV +E+ ++L I L E + K LSYR G + +GG++ D+P ++L
Sbjct: 31 RLRVYQEILQTYDQLK-IDSKNLKEAKEKILSYRPGAWIEKVGGLKLCDYDVPKTTCLIL 89
Query: 104 MGFSGSGKSSLVNLMYSVLSRSGLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162
+G SGSGKSSL+N + V AQ S + + T ++ E+ + R ++ C+Y
Sbjct: 90 VGPSGSGKSSLINRISKVFEDDNFAPARAQVSYNSLNGDGTCFLREYMIPRE-KTSICLY 148
Query: 163 DSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK 212
D+R + + ++E L +WM++GV + + +R+ D ++ + D K
Sbjct: 149 DTRSLS-DDLNENNRMLKNWMTKGVCNGELVVRNADNQKLRKSLKHKDNK 197
>gi|414886271|tpg|DAA62285.1| TPA: hypothetical protein ZEAMMB73_289405 [Zea mays]
Length = 236
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 76 YRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTS- 134
Y+ GD+ +GG + G +P V T+LL+G GSGKS+LVN + V + +
Sbjct: 139 YKPGDWIEGVGGAKAGHFVLPEVTTLLLVGPRGSGKSTLVNRITRVFDKDDDPFAPDRAQ 198
Query: 135 -SGNSSHTITMYMEEHNVMRS 154
S NS TM++ E+ + R+
Sbjct: 199 VSCNSKSNGTMFLREYPIPRN 219
>gi|413916052|gb|AFW55984.1| hypothetical protein ZEAMMB73_901421 [Zea mays]
Length = 584
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 76 YRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTS- 134
Y+ GD+ +GG + G +P V T+LL+G GSGKS+LVN + V + +
Sbjct: 172 YKPGDWIEGVGGAKAGHFVLPEVTTLLLVGPRGSGKSTLVNRITRVFDKDDDPFAPDRAQ 231
Query: 135 -SGNSSHTITMYMEEHNVMRS 154
S NS TM++ E+ + R+
Sbjct: 232 VSCNSKSNGTMFLREYPIPRN 252
>gi|420453577|ref|ZP_14952413.1| hypothetical protein HPHPA8_0657 [Helicobacter pylori Hp A-8]
gi|393069326|gb|EJB70123.1| hypothetical protein HPHPA8_0657 [Helicobacter pylori Hp A-8]
Length = 154
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 29/132 (21%)
Query: 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI----------PPVITILLMGFSGSGKSS 113
D LN + HKFL GD + G ++GG+++ P++ ILLMG +G GKSS
Sbjct: 7 DKLNGILHKFL----GDAFTLDG--KEGGLNMEKLHEAIKKEKPIMNILLMGATGVGKSS 60
Query: 114 LVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173
L+N ++ + + IT ++E++ + G ++D++G H
Sbjct: 61 LINALFG----------KEIAKAGVGKPITQHLEKY---VDEEKGLILWDTKGIEDKDYH 107
Query: 174 EGLEELSSWMSE 185
+ ++ + M +
Sbjct: 108 DTMQSIKKEMED 119
>gi|88602569|ref|YP_502747.1| GTPase EngC [Methanospirillum hungatei JF-1]
gi|88188031|gb|ABD41028.1| GTPase EngC [Methanospirillum hungatei JF-1]
Length = 204
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 83 IPIGGIQKGGMD-----IPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN 137
IPI + G++ + P T++ +G SG GKS+L+N + + + + G
Sbjct: 18 IPISALNNTGLEHLNPFLAPGNTVIFLGSSGVGKSTLINTLNGTSVQKTEDI--REDDGK 75
Query: 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSD 197
HT M H V SL SG C+ D+ G R+ E + + +QRC R
Sbjct: 76 ERHTT---MVRHLV--SLPSGSCLIDTPGMREIRIWTAEESVQDAFEDIAKFSQRC-RFS 129
Query: 198 DCA 200
DCA
Sbjct: 130 DCA 132
>gi|323445635|gb|EGB02148.1| hypothetical protein AURANDRAFT_35515 [Aureococcus anophagefferens]
Length = 269
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P + +LL+G G+GKSSLVN +YS L + L A+ G + TIT +++ L
Sbjct: 41 PKVNVLLVGGPGAGKSSLVNSIYSALEGEMVRLAAR---GTGAGTITTRFTKYD-FEDLA 96
Query: 157 SGFCVYDSRGFNYNRVHEGL--EELSSWMSEGVHHNQRCL 194
++DS G+ + G L + +G +QR +
Sbjct: 97 PAVAIWDSAGWTEDTYKHGALNHVLGGHLPDGFELDQRHI 136
>gi|440795787|gb|ELR16903.1| zinc finger domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 525
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 13/84 (15%)
Query: 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSL 155
P +T LL+G +G GKSSL+NL++ G ++ AQ S NS+ T + + EH ++ L
Sbjct: 194 PNKVTFLLLGLTGHGKSSLINLLF------GRLVTAQGHSQNST-TQDVALYEHPLVDGL 246
Query: 156 ----QSGFCVYDSRGFNYNRVHEG 175
GF +DSRG ++ +E
Sbjct: 247 YFIDTPGF--FDSRGEAQDQENEA 268
>gi|294624751|ref|ZP_06703416.1| ribosome-associated GTPase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292600955|gb|EFF45027.1| ribosome-associated GTPase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 363
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN-----DAEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A ID +
Sbjct: 258 CLIDTPGMRELKP-TGEEDLAEGGFSDVEALAAQCRFNDCAHVAEPGCAVQAAIDAGELD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + M V++ AE A A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRMEVASAAEKLAARVAQNNRGKGSGKRPASVDRPGRR 363
>gi|294665013|ref|ZP_06730321.1| ribosome-associated GTPase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292605204|gb|EFF48547.1| ribosome-associated GTPase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 363
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN-----DAEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A ID +
Sbjct: 258 CLIDTPGMRELKP-TGEEDLAEGGFSDVEALAAQCRFNDCAHVAEPGCAVQAAIDAGELD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + M V++ AE A A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRMEVASAAEKLAARVAQNNRGKGSGKRPASVDRPGRR 363
>gi|421713057|ref|ZP_16152388.1| 50S ribosome-binding GTPase family protein [Helicobacter pylori
R32b]
gi|407216423|gb|EKE86260.1| 50S ribosome-binding GTPase family protein [Helicobacter pylori
R32b]
Length = 153
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 29/130 (22%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDI----------PPVITILLMGFSGSGKSSLV 115
LN + HKFL GD + G ++GG+++ P++ ILLMG +G GKSSL+
Sbjct: 10 LNGVLHKFL----GDAFTLDG--KEGGLNMEKLHEAIKKEKPIMNILLMGATGVGKSSLI 63
Query: 116 NLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175
N ++ + + IT ++E++ + G ++D++G +
Sbjct: 64 NALFG----------KEVAKAGVGKPITQHLEKY---VDEEKGLILWDTKGIEDKDYEDT 110
Query: 176 LEELSSWMSE 185
LE + M +
Sbjct: 111 LESIKKEMED 120
>gi|420519711|ref|ZP_15018152.1| GTPase of unknown function family protein [Helicobacter pylori Hp
H-5b]
gi|393126584|gb|EJC27034.1| GTPase of unknown function family protein [Helicobacter pylori Hp
H-5b]
Length = 150
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 15/88 (17%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNS-SHTITMYMEEHNVMRSLQS 157
+ ILLMG++GSGKSSL+N ++ A+T+ G + I Y++E Q
Sbjct: 38 MNILLMGYTGSGKSSLINALFG-------KEIAKTAVGEPVTQHIEKYIDE-------QK 83
Query: 158 GFCVYDSRGFNYNRVHEGLEELSSWMSE 185
G ++D++G H+ ++ + M E
Sbjct: 84 GLILWDTQGIEAADYHDTMQSIKQRMEE 111
>gi|116872763|ref|YP_849544.1| GTPase EngC [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116741641|emb|CAK20765.1| GTPase engC protein 2, putative [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 346
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYM 146
G + D+ P T++L+G SG GKSS +N + V + A S G HT T
Sbjct: 172 GFEALKRDLKPHSTLVLLGSSGVGKSSFINSLAGVDLIKTADIRADDSKGK--HTTT--- 226
Query: 147 EEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMK 203
H M L +G+ V D+ R F H GLE S + E H C R DC+ K
Sbjct: 227 --HREMHLLNNGWIVIDTPGMREFGVGINHTGLETTFSDIEELAQH---C-RFRDCSHTK 280
>gi|420423737|ref|ZP_14922808.1| hypothetical protein HPHPA4_0964 [Helicobacter pylori Hp A-4]
gi|393041459|gb|EJB42475.1| hypothetical protein HPHPA4_0964 [Helicobacter pylori Hp A-4]
Length = 155
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 29/130 (22%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDI----------PPVITILLMGFSGSGKSSLV 115
LN + KFL GD + G ++GG+++ P++ ILLMG +G GKSSL+
Sbjct: 10 LNGVLRKFL----GDAFTLDG--KEGGLNMEKLHEAIKKEKPIMNILLMGGTGVGKSSLI 63
Query: 116 NLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175
N ++ + + IT ++E++ Q G ++D++G H+
Sbjct: 64 NALFG----------KEIAKAGVGKPITQHLEKY---IDEQKGLVLWDTKGIEDKDYHDT 110
Query: 176 LEELSSWMSE 185
++ + M +
Sbjct: 111 MQSIKKEMED 120
>gi|420489231|ref|ZP_14987826.1| hypothetical protein HPHPP11_1089 [Helicobacter pylori Hp P-11]
gi|420522990|ref|ZP_15021411.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-11b]
gi|393106071|gb|EJC06616.1| hypothetical protein HPHPP11_1089 [Helicobacter pylori Hp P-11]
gi|393128988|gb|EJC29427.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-11b]
Length = 151
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 29/130 (22%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDI----------PPVITILLMGFSGSGKSSLV 115
LN + KFL GD + G ++GG+++ P++ ILLMG +G GKSSL+
Sbjct: 10 LNGILRKFL----GDAFTLDG--KEGGLNMEKLCEVIKKEKPIMNILLMGATGVGKSSLI 63
Query: 116 NLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175
N ++ + + IT ++E++ Q G ++D++G H+
Sbjct: 64 NALFG----------KEIAKAGVGKPITQHLEKY---IDEQKGLILWDTKGIEGKDYHDT 110
Query: 176 LEELSSWMSE 185
++ + M +
Sbjct: 111 MQSIKKEMED 120
>gi|443316736|ref|ZP_21046169.1| ribosome small subunit-dependent GTPase A [Leptolyngbya sp. PCC
6406]
gi|442783647|gb|ELR93554.1| ribosome small subunit-dependent GTPase A [Leptolyngbya sp. PCC
6406]
Length = 410
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 75 SYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVN-LMYSVLSRSGLVLFAQT 133
S ++ D W+P+G + + + I + G SG GKSSL+N L+ + R+G V
Sbjct: 197 SVQTQDPWLPLGDMLRDRVTI-------ISGPSGVGKSSLINGLIPAAHLRTGTV---SG 246
Query: 134 SSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
G HT H + L +G + D+ GFN +H EEL + E
Sbjct: 247 KLGRGRHTT-----RHVELFELPTGGLLADTPGFNQPDIHCAPEELGYYFPE 293
>gi|420430541|ref|ZP_14929569.1| hypothetical protein HPHPA20_0986 [Helicobacter pylori Hp A-20]
gi|393047238|gb|EJB48213.1| hypothetical protein HPHPA20_0986 [Helicobacter pylori Hp A-20]
Length = 180
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSL 155
P + +LLMG++GSGKSSL+N ++ + + IT ++E++
Sbjct: 43 KPKMNVLLMGYTGSGKSSLINALFG----------EEIAKAGVGKPITQHLEKY---IDE 89
Query: 156 QSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
Q G ++D++G H+ ++ + M +
Sbjct: 90 QKGLILWDTKGIEAADYHDTMQSIKKEMED 119
>gi|221214161|ref|ZP_03587133.1| macrolide export ATP-binding/permease protein MacB 1/2
[Burkholderia multivorans CGD1]
gi|421467510|ref|ZP_15916124.1| ABC transporter, ATP-binding protein [Burkholderia multivorans ATCC
BAA-247]
gi|221165816|gb|EED98290.1| macrolide export ATP-binding/permease protein MacB 1/2
[Burkholderia multivorans CGD1]
gi|400233600|gb|EJO63130.1| ABC transporter, ATP-binding protein [Burkholderia multivorans ATCC
BAA-247]
Length = 232
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L E+RH SYR G +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 4 APPPLVEIRHVAKSYRRGSQIVPV--LTDITLDIGEGDFVALMGPSGSGKSTLLNLVAGI 61
>gi|375107303|ref|ZP_09753564.1| ABC-type antimicrobial peptide transport system, ATPase component
[Burkholderiales bacterium JOSHI_001]
gi|374668034|gb|EHR72819.1| ABC-type antimicrobial peptide transport system, ATPase component
[Burkholderiales bacterium JOSHI_001]
Length = 237
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 76 YRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LSRSGLVLFAQTS 134
YR+G+ + + +Q +DIP ++L+G SGSGKS+L+N++ + + SG V F
Sbjct: 17 YRTGE--VDVVALQGVTLDIPRGEFVVLLGASGSGKSTLLNILGGLDVPTSGTVSFGDHE 74
Query: 135 -SGNSSHTITMYMEEH 149
+G S +T Y EH
Sbjct: 75 LTGASEADLTRYRREH 90
>gi|384892769|ref|YP_005766862.1| hypothetical protein HPCU_03970 [Helicobacter pylori Cuz20]
gi|308062066|gb|ADO03954.1| hypothetical protein HPCU_03970 [Helicobacter pylori Cuz20]
Length = 143
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 29/130 (22%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDI----------PPVITILLMGFSGSGKSSLV 115
L+ + HKFL GD + G ++GG+++ P++ ILLMG SG GKSSL+
Sbjct: 10 LSGILHKFL----GDAFTLDG--KEGGLNMEKMRETIKKEKPIMNILLMGESGVGKSSLI 63
Query: 116 NLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175
N ++ + + +T ++E+H + G ++D++G
Sbjct: 64 NALFG----------QEVAKAGVGGPLTQHLEKH---VDEEKGLILWDTKGIEAEDYQNT 110
Query: 176 LEELSSWMSE 185
+E L M +
Sbjct: 111 MESLKKEMED 120
>gi|228991039|ref|ZP_04151001.1| GTPase [Bacillus pseudomycoides DSM 12442]
gi|228997122|ref|ZP_04156751.1| GTPase [Bacillus mycoides Rock3-17]
gi|229004778|ref|ZP_04162512.1| GTPase [Bacillus mycoides Rock1-4]
gi|228756492|gb|EEM05803.1| GTPase [Bacillus mycoides Rock1-4]
gi|228762631|gb|EEM11549.1| GTPase [Bacillus mycoides Rock3-17]
gi|228768715|gb|EEM17316.1| GTPase [Bacillus pseudomycoides DSM 12442]
Length = 349
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 55 MERLALIAPDGLNELRHKFLSYRSGDFWIPIGGI---QKGGMD-----IPPVITILLMGF 106
M + L D ++ K L + +PI + Q+ G++ + TI L+G
Sbjct: 142 MPVIVLTKSDLCEDVEQKILETEAIAIGVPIFAVDSLQQAGVESLQQFVTSGKTIALVGS 201
Query: 107 SGSGKSSLVN-LMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165
SG+GKS+L+N LM S ++++G + + HT T H + L SG V D+
Sbjct: 202 SGAGKSTLLNALMGSEVAKTGGI---REEDSKGRHTTT-----HRELFQLPSGGLVIDTP 253
Query: 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDC 199
G ++ EG E + + S+ + C R DC
Sbjct: 254 GMRELQLWEGSEAIHATFSDIEKFAEEC-RFRDC 286
>gi|420499867|ref|ZP_14998419.1| hypothetical protein HPHPP26_1426 [Helicobacter pylori Hp P-26]
gi|393149101|gb|EJC49413.1| hypothetical protein HPHPP26_1426 [Helicobacter pylori Hp P-26]
Length = 109
Score = 41.2 bits (95), Expect = 0.89, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
+ ILLMG++GSGKSSL+N ++ + + IT ++E++ Q G
Sbjct: 1 MNILLMGYTGSGKSSLINALFG----------KEIAKAGVGKPITQHLEKY---IDEQKG 47
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSE 185
++D++G H+ ++ + M +
Sbjct: 48 LILWDTKGIEATDYHDTMQSIKKEMED 74
>gi|260833092|ref|XP_002611491.1| hypothetical protein BRAFLDRAFT_63874 [Branchiostoma floridae]
gi|229296862|gb|EEN67501.1| hypothetical protein BRAFLDRAFT_63874 [Branchiostoma floridae]
Length = 317
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 50/282 (17%)
Query: 67 NELRHKFLSYRSGDFW-------IPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNL-- 117
N+ R + +YR G+ + I +Q+GG+ I L G +GSGKSS +N
Sbjct: 55 NKKRQELRNYRFGNIHGQHYFAGLDIRDMQEGGLRIG------LFGPAGSGKSSFINTCE 108
Query: 118 --MYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175
M L R + QT+ G + + Y+++ + + FC+ D+RGF
Sbjct: 109 RAMKQGLRRGNADI--QTAYGEGTIVLQEYLDD------IDNDFCLVDTRGF----FQHN 156
Query: 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIY 235
++EL++ +++ VH R + + EID+ P ++ A+++
Sbjct: 157 IDELTA-LADIVHGRIRPGQEVKFGRSADKEEIDEY--FPNWL-----HAIII------- 201
Query: 236 KALKAGDSKPLDATKRLFSAPGLRK-CNENPILILTHGDMLSTEERLDARLKICEYLGVS 294
L A D + D + +R + ++TH D + + D K G
Sbjct: 202 -VLSATDPRLQDGHTHRNNLKIVRDFMRRRVVTVITHHDRIHESQEEDILAKASAATG-- 258
Query: 295 EISGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDR 336
S + I + Y +E D T E + AL +++R
Sbjct: 259 --SALDHIFFVANYHIDKKETDYNTEMGALEVMKSALHVAER 298
>gi|168007234|ref|XP_001756313.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692352|gb|EDQ78709.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 458
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 17/102 (16%)
Query: 101 ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFC 160
I+L G +GSGKS++ + L++ GL +++ G+S+ +T +V R G+
Sbjct: 196 IILFGRTGSGKSTVARM----LTQGGLENYSKFVPGSSAKGVT-----KDVTREQGRGWF 246
Query: 161 VYDSRGFNYNRV------HEGLEELSSWMSE--GVHHNQRCL 194
V D+ GF +R+ E +++L ++MS+ G+H + C+
Sbjct: 247 VTDTPGFGESRMSGTVPTEEAIQKLKTFMSKIGGIHTHFACV 288
>gi|348506968|ref|XP_003441029.1| PREDICTED: interferon-induced protein 44-like [Oreochromis
niloticus]
Length = 297
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
+ ILL G G+GKSS +N + SVL G + ++ NS + T+ + + + +
Sbjct: 53 LRILLYGPPGAGKSSFINSVDSVL--RGKIAIRALAAANSGDSFTIAHKTYKIQKGNPET 110
Query: 159 FCVY---DSRGFNYNRVHEG---LEE----LSSWMSEGVHHNQRCLRSDDCALMKNDAEI 208
F + D+ G R HEG +E+ +S + EG N +C + A ++ + +
Sbjct: 111 FYPFVFTDTMGL--ERDHEGGIHVEDIKLAISGHVKEGYRFNPKCPLPETDANYRSSSTL 168
Query: 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAG 241
DD VLR M+ + K ++A
Sbjct: 169 DDKAHILALVLRADTVNMIDDETVKKMKGVRAA 201
>gi|418515905|ref|ZP_13082083.1| GTPase RsgA [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
gi|418520792|ref|ZP_13086839.1| GTPase RsgA [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|410703215|gb|EKQ61709.1| GTPase RsgA [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|410707508|gb|EKQ65960.1| GTPase RsgA [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
Length = 363
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A ID +
Sbjct: 258 CLIDTPGMRELKP-TGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIDAGELD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + M V++ AE A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRMEVASAAEKLATRVAQNNRGKGSGKRPASVDRPGRR 363
>gi|381170260|ref|ZP_09879419.1| ribosome small subunit-dependent GTPase A [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380689328|emb|CCG35906.1| ribosome small subunit-dependent GTPase A [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 363
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A ID +
Sbjct: 258 CLIDTPGMRELK-PTGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIDAGELD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + M V++ AE A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRMEVASAAEKLATRVAQNNRGKGSGKRPASVDRPGRR 363
>gi|390992832|ref|ZP_10263047.1| ribosome small subunit-dependent GTPase A [Xanthomonas axonopodis
pv. punicae str. LMG 859]
gi|372552421|emb|CCF70022.1| ribosome small subunit-dependent GTPase A [Xanthomonas axonopodis
pv. punicae str. LMG 859]
Length = 363
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A ID +
Sbjct: 258 CLIDTPGMRELKP-TGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIDAGELD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + M V++ AE A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRMEVASAAEKLATRVAQNNRGKGSGKRPASVDRPGRR 363
>gi|116688327|ref|YP_833950.1| ABC transporter-like protein [Burkholderia cenocepacia HI2424]
gi|116646416|gb|ABK07057.1| ABC transporter related protein [Burkholderia cenocepacia HI2424]
Length = 232
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L EL H SYR G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 4 APTPLVELSHVAKSYRRGNQIVPV--LTDISLDIGEGDFVALMGPSGSGKSTLLNLVAGI 61
>gi|254246803|ref|ZP_04940124.1| ABC-type antimicrobial peptide transport system, ATPase component
[Burkholderia cenocepacia PC184]
gi|124871579|gb|EAY63295.1| ABC-type antimicrobial peptide transport system, ATPase component
[Burkholderia cenocepacia PC184]
Length = 232
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L EL H SYR G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 4 APPPLVELSHVAKSYRRGNQIVPV--LTDISLDIGEGDFVALMGPSGSGKSTLLNLVAGI 61
>gi|380513772|ref|ZP_09857179.1| GTPase RsgA [Xanthomonas sacchari NCPPB 4393]
Length = 370
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P T +L+G SG+GKS+L N + V + A S G HT T H + L
Sbjct: 202 PGQTAVLVGSSGAGKSTLTNTLLGVQKMRTAAVRATDSRGR--HTTT-----HRALLPLP 254
Query: 157 SGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA 200
SG C+ D+ G + G E+L+ + R +DCA
Sbjct: 255 SGACLIDTPGMRELK-PTGEEDLAEGAFADIEALAAQCRFNDCA 297
>gi|260833104|ref|XP_002611497.1| hypothetical protein BRAFLDRAFT_63868 [Branchiostoma floridae]
gi|229296868|gb|EEN67507.1| hypothetical protein BRAFLDRAFT_63868 [Branchiostoma floridae]
Length = 292
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 111/280 (39%), Gaps = 46/280 (16%)
Query: 67 NELRHKFLSYRSGDFW-------IPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY 119
N R + L+YR GD + I +++GG + I L+G GSGKSS +N
Sbjct: 11 NRKRQELLNYRFGDVHGQHYFCGLDIRDMREGG------VRIGLIGPIGSGKSSFINTCE 64
Query: 120 SVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG-FNYNRVHEGLEE 178
L A+ + N TI + + + FC+ D+RG F +N ++E
Sbjct: 65 RALKPDLRKGTAEIQTANGEGTIVL----QEFLDDFDNDFCLVDTRGLFQHN-----IDE 115
Query: 179 LSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-LKSSPKYVLRRVDFAMVVSNIAEIYKA 237
++ + + V+ ++ + A+I+D +++ P ++ A+++
Sbjct: 116 FTA-LGDIVYGR---IKPGEVVKFGTPADIEDTVENFPNWL-----HAIII--------V 158
Query: 238 LKAGDSKPLDATKRLFSAPGLRK-CNENPILILTHGDMLSTEERLDARLKICEYLGVSEI 296
L A D + D +R + ++TH DM+ + D K C G
Sbjct: 159 LSATDPRLQDGHTHRKHLKIVRDFMRRRVVTVITHHDMIDRSQEEDILAKACAATG---- 214
Query: 297 SGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDR 336
S + Y +E D T + + AL +++R
Sbjct: 215 SAREQTFLVANYHLDKKETDYNTEIKAMDVMKSALNVAER 254
>gi|170731639|ref|YP_001763586.1| ABC transporter-like protein [Burkholderia cenocepacia MC0-3]
gi|169814881|gb|ACA89464.1| ABC transporter related [Burkholderia cenocepacia MC0-3]
Length = 232
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L EL H SYR G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 4 APTPLVELSHVAKSYRRGNQIVPV--LTDITLDIGEGDFVALMGPSGSGKSTLLNLVAGI 61
>gi|420462116|ref|ZP_14960902.1| hypothetical protein HPHPH3_0942 [Helicobacter pylori Hp H-3]
gi|393079851|gb|EJB80582.1| hypothetical protein HPHPH3_0942 [Helicobacter pylori Hp H-3]
Length = 109
Score = 40.4 bits (93), Expect = 1.6, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
+ ILLMG++GSGKSSL+N ++ + + IT ++E++ Q G
Sbjct: 1 MNILLMGYTGSGKSSLINALFG----------KEIAKAGVGKPITQHLEKY---IDEQKG 47
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSE 185
+D++G H+ ++ + M +
Sbjct: 48 LVFWDTQGIEATDYHDTMQSIKKEMED 74
>gi|420482316|ref|ZP_14980953.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-2]
gi|420512739|ref|ZP_15011222.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-2b]
gi|393099550|gb|EJC00132.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-2]
gi|393157802|gb|EJC58063.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-2b]
Length = 148
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 15/88 (17%)
Query: 99 ITILLMGFSGSGKSSLVNLMY-SVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQS 157
+ ILLMG++GSGKSSL+N ++ ++++G+ +T ++E++ Q
Sbjct: 38 MNILLMGYTGSGKSSLINALFGKEIAKAGV-----------GKPVTQHLEKY---IDEQK 83
Query: 158 GFCVYDSRGFNYNRVHEGLEELSSWMSE 185
G ++D++G H+ ++ + M E
Sbjct: 84 GLILWDTKGIEDKDYHDTMQSIKQRMEE 111
>gi|420479311|ref|ZP_14977960.1| hypothetical protein HPHPH34_1202 [Helicobacter pylori Hp H-34]
gi|393095553|gb|EJB96157.1| hypothetical protein HPHPH34_1202 [Helicobacter pylori Hp H-34]
Length = 395
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
+ ILLMG++GSGKSSL+N ++ + + IT ++E++ Q G
Sbjct: 38 MNILLMGYTGSGKSSLINALFG----------KEIAKAGVGKPITQHLEKY---IDEQKG 84
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSE 185
++D++G H+ ++ + M +
Sbjct: 85 LILWDTKGIEGKDYHDTMQSIKKEMED 111
>gi|206558596|ref|YP_002229356.1| ABC transporter ATP-binding protein [Burkholderia cenocepacia
J2315]
gi|421868611|ref|ZP_16300257.1| ABC-type antimicrobial peptide transport system,ATPase component
[Burkholderia cenocepacia H111]
gi|444359227|ref|ZP_21160550.1| ABC transporter, ATP-binding protein [Burkholderia cenocepacia BC7]
gi|444371412|ref|ZP_21170972.1| ABC transporter, ATP-binding protein [Burkholderia cenocepacia
K56-2Valvano]
gi|198034633|emb|CAR50500.1| ABC transporter ATP-binding protein [Burkholderia cenocepacia
J2315]
gi|358071394|emb|CCE51135.1| ABC-type antimicrobial peptide transport system,ATPase component
[Burkholderia cenocepacia H111]
gi|443595502|gb|ELT64084.1| ABC transporter, ATP-binding protein [Burkholderia cenocepacia
K56-2Valvano]
gi|443602385|gb|ELT70469.1| ABC transporter, ATP-binding protein [Burkholderia cenocepacia BC7]
Length = 232
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L EL H SYR G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 4 APPPLVELSHVAKSYRRGNQIVPV--LTDITLDIGEGDFVALMGPSGSGKSTLLNLVAGI 61
>gi|285017667|ref|YP_003375378.1| GTPase engc protein [Xanthomonas albilineans GPE PC73]
gi|283472885|emb|CBA15390.1| probable gtpase engc protein [Xanthomonas albilineans GPE PC73]
Length = 370
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P T++L+G SG+GKS+L N + V + + S G HT T H + L
Sbjct: 202 PGQTVVLVGSSGAGKSTLTNTLLGVHKMRTAAVRERDSRGR--HTTT-----HRALLPLP 254
Query: 157 SGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA 200
SG C+ D+ G + G E+L+ + R +DCA
Sbjct: 255 SGACLIDTPGMRELK-PTGEEDLAEGAFADIEALAAQCRFNDCA 297
>gi|384894216|ref|YP_005768265.1| hypothetical protein HPSAT_03070 [Helicobacter pylori Sat464]
gi|308063470|gb|ADO05357.1| hypothetical protein HPSAT_03070 [Helicobacter pylori Sat464]
Length = 158
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 29/125 (23%)
Query: 71 HKFLSYRSGDFWIPIGGIQKGGMDI----------PPVITILLMGFSGSGKSSLVNLMYS 120
HKF S D ++ G ++GG+++ P++ ILLMG SG GKSSL+N ++
Sbjct: 15 HKF----SADAFMLDG--KEGGLNMEKMHEVIKKEKPIMNILLMGESGVGKSSLINALFG 68
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
+ + IT ++E+H + + ++D++G +E L
Sbjct: 69 ----------QEVAKAGVGKAITQHLEKH---VNEEKDLILWDTKGIEAEDYQNTMESLK 115
Query: 181 SWMSE 185
M +
Sbjct: 116 KEMED 120
>gi|420434015|ref|ZP_14933020.1| hypothetical protein HPHPH24_1052 [Helicobacter pylori Hp H-24]
gi|420507780|ref|ZP_15006289.1| GTPase of unknown function family protein [Helicobacter pylori Hp
H-24b]
gi|420509363|ref|ZP_15007865.1| GTPase of unknown function family protein [Helicobacter pylori Hp
H-24c]
gi|420533197|ref|ZP_15031558.1| hypothetical protein HPHPM1_1044 [Helicobacter pylori Hp M1]
gi|420534773|ref|ZP_15033121.1| hypothetical protein HPHPM2_0924 [Helicobacter pylori Hp M2]
gi|420536484|ref|ZP_15034826.1| hypothetical protein HPHPM3_0957 [Helicobacter pylori Hp M3]
gi|420538276|ref|ZP_15036603.1| hypothetical protein HPHPM4_1054 [Helicobacter pylori Hp M4]
gi|420540010|ref|ZP_15038327.1| hypothetical protein HPHPM5_1090 [Helicobacter pylori Hp M5]
gi|420541675|ref|ZP_15039983.1| hypothetical protein HPHPM6_1079 [Helicobacter pylori Hp M6]
gi|420543195|ref|ZP_15041487.1| hypothetical protein HPHPM9_0878 [Helicobacter pylori Hp M9]
gi|393050430|gb|EJB51390.1| hypothetical protein HPHPH24_1052 [Helicobacter pylori Hp H-24]
gi|393117633|gb|EJC18134.1| GTPase of unknown function family protein [Helicobacter pylori Hp
H-24b]
gi|393120789|gb|EJC21278.1| GTPase of unknown function family protein [Helicobacter pylori Hp
H-24c]
gi|393137658|gb|EJC38041.1| hypothetical protein HPHPM1_1044 [Helicobacter pylori Hp M1]
gi|393141413|gb|EJC41778.1| hypothetical protein HPHPM2_0924 [Helicobacter pylori Hp M2]
gi|393142990|gb|EJC43335.1| hypothetical protein HPHPM4_1054 [Helicobacter pylori Hp M4]
gi|393144132|gb|EJC44476.1| hypothetical protein HPHPM3_0957 [Helicobacter pylori Hp M3]
gi|393146227|gb|EJC46556.1| hypothetical protein HPHPM5_1090 [Helicobacter pylori Hp M5]
gi|393148295|gb|EJC48619.1| hypothetical protein HPHPM6_1079 [Helicobacter pylori Hp M6]
gi|393159250|gb|EJC59503.1| hypothetical protein HPHPM9_0878 [Helicobacter pylori Hp M9]
Length = 109
Score = 40.0 bits (92), Expect = 2.0, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 15/88 (17%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSV-LSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQS 157
+ ILLMG++GSGKSSL+N ++ ++++G+ +T ++E++ Q
Sbjct: 1 MNILLMGYTGSGKSSLINALFGKEIAKTGI-----------GEPVTQHLEKY---IDEQK 46
Query: 158 GFCVYDSRGFNYNRVHEGLEELSSWMSE 185
G ++D++G H+ ++ + M +
Sbjct: 47 GLILWDTKGIEAADYHDTMQSIKKEMED 74
>gi|420443747|ref|ZP_14942675.1| hypothetical protein HPHPH41_0827 [Helicobacter pylori Hp H-41]
gi|393061254|gb|EJB62123.1| hypothetical protein HPHPH41_0827 [Helicobacter pylori Hp H-41]
Length = 168
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
+ ILLMG++GSGKSSL+N ++ + + IT ++E++ Q G
Sbjct: 1 MNILLMGYTGSGKSSLINALFG----------KEIAKAGVGKPITQHLEKY---IDEQKG 47
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSE 185
++D++G H+ ++ + M +
Sbjct: 48 LILWDTKGIEATDYHDTMQSIKKEMED 74
>gi|420497734|ref|ZP_14996294.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-25]
gi|420528107|ref|ZP_15026499.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-25c]
gi|420529976|ref|ZP_15028361.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-25d]
gi|393114013|gb|EJC14531.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-25]
gi|393134002|gb|EJC34417.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-25c]
gi|393136305|gb|EJC36696.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-25d]
Length = 109
Score = 40.0 bits (92), Expect = 2.0, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
+ ILLMG++GSGKSSL+N ++ + + IT ++E++ Q G
Sbjct: 1 MNILLMGYTGSGKSSLINALFG----------KEIAKAGVGKPITQHLEKY---VDEQKG 47
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSE 185
++D++G H ++ + M +
Sbjct: 48 LILWDTKGIEDKDYHNTMQSIKKEMED 74
>gi|416950926|ref|ZP_11935417.1| ABC transporter ATP-binding protein [Burkholderia sp. TJI49]
gi|325523231|gb|EGD01601.1| ABC transporter ATP-binding protein [Burkholderia sp. TJI49]
Length = 232
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L E+ H SYR G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 4 APPPLVEISHVAKSYRRGNQLVPV--LTDITLDIGEGEFVALMGPSGSGKSTLLNLVAGI 61
>gi|339505632|ref|YP_004693052.1| lipid A export ATP-binding/permease MsbA [Roseobacter litoralis Och
149]
gi|338759625|gb|AEI96089.1| putative lipid A export ATP-binding/permease protein MsbA
[Roseobacter litoralis Och 149]
Length = 610
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 41 NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100
+ TLTPR R+ +AL P G EL +Y GG+Q + + P
Sbjct: 333 GIKTLTPRQRIEDNASAMALEVPAGQIELHDLGFAYGR-----QTGGVQGINLTVHPGEK 387
Query: 101 ILLMGFSGSGKSSLVNLM 118
I ++G SG GKS+LV L+
Sbjct: 388 IGIVGASGVGKSTLVALL 405
>gi|420452066|ref|ZP_14950916.1| hypothetical protein HPHPA6_0815 [Helicobacter pylori Hp A-6]
gi|393069907|gb|EJB70702.1| hypothetical protein HPHPA6_0815 [Helicobacter pylori Hp A-6]
Length = 398
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
+ ILLMG++GSGKSSL+N ++ + + IT ++E++ Q G
Sbjct: 38 MNILLMGYTGSGKSSLINALFG----------KEIAKAGVGKPITQHIEKY---IDEQKG 84
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSE 185
++D++G H+ ++ + M +
Sbjct: 85 LILWDTQGIEAADYHDTMQSIKKEMED 111
>gi|381196246|ref|ZP_09903588.1| lipid A export permease/ATP-binding protein MsbA [Acinetobacter
lwoffii WJ10621]
Length = 575
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 35/139 (25%)
Query: 37 LDLP---NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93
LDLP N LTP L+ + + + L+ DG + L LS + G+
Sbjct: 316 LDLPEEKNTGALTPVLKGNIDFKHVNLVYTDGHHALHDFNLSVKEGE------------- 362
Query: 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNV-M 152
T+ L+G SG+GK+SLVNL LV F T+SG + ++ HN+ +
Sbjct: 363 ------TVALVGRSGAGKTSLVNL---------LVRFQDTTSG---QILFDGVDIHNIEI 404
Query: 153 RSLQSGFCVYDSRGFNYNR 171
SL++ + + + +NR
Sbjct: 405 NSLRTQVAMVNQQVVLFNR 423
>gi|340617620|ref|YP_004736073.1| nitrate-specific ABC transporter ATPase [Zobellia galactanivorans]
gi|339732417|emb|CAZ95685.1| Nitrate-specific ABC transporter, ATPase component [Zobellia
galactanivorans]
Length = 279
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG 126
EL + + SY GD + + + I + ++GF+GSGK++LVNL+ +L SG
Sbjct: 5 ELNNVYKSYGEGDNRTDV--LSNINLSIEEGEFVAIVGFTGSGKTTLVNLINGLLKPTSG 62
Query: 127 LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162
VLF ++SH + + ++++ L G VY
Sbjct: 63 EVLFKGEPVVDTSHERGVIFQNYSLLPWLTVGQNVY 98
>gi|420431333|ref|ZP_14930352.1| hypothetical protein HPHPH16_0047 [Helicobacter pylori Hp H-16]
gi|393048926|gb|EJB49892.1| hypothetical protein HPHPH16_0047 [Helicobacter pylori Hp H-16]
Length = 156
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 15/90 (16%)
Query: 97 PVITILLMGFSGSGKSSLVNLMY-SVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSL 155
P + +LLMG +GSGKSSL+N ++ ++++G+ + I Y++E
Sbjct: 44 PKMNVLLMGATGSGKSSLINALFGEEIAKAGI-------GEPVTQHIEKYIDE------- 89
Query: 156 QSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
Q G ++D++G H+ ++ + M E
Sbjct: 90 QKGLILWDTQGIEAADYHDTMQSIKQRMEE 119
>gi|262370376|ref|ZP_06063702.1| lipid ABC transporter membrane/ATP-binding protein [Acinetobacter
johnsonii SH046]
gi|262314718|gb|EEY95759.1| lipid ABC transporter membrane/ATP-binding protein [Acinetobacter
johnsonii SH046]
Length = 575
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 35/139 (25%)
Query: 37 LDLP---NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93
LDLP N LTP L+ + + + L+ DG + L LS + G+
Sbjct: 316 LDLPEEKNTGALTPVLKGNIDFKHVNLVYTDGHHALHDFNLSVKEGE------------- 362
Query: 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNV-M 152
T+ L+G SG+GK+SLVNL LV F T+SG + ++ HN+ +
Sbjct: 363 ------TVALVGRSGAGKTSLVNL---------LVRFQDTTSG---QILFDGVDIHNIEI 404
Query: 153 RSLQSGFCVYDSRGFNYNR 171
SL++ + + + +NR
Sbjct: 405 NSLRTQVAMVNQQVVLFNR 423
>gi|384891124|ref|YP_005765257.1| hypothetical protein hp908_0757 [Helicobacter pylori 908]
gi|385223796|ref|YP_005783722.1| hypothetical protein hp2017_07253 [Helicobacter pylori 2017]
gi|385231646|ref|YP_005791565.1| hypothetical protein hp2018_07263 [Helicobacter pylori 2018]
gi|307637433|gb|ADN79883.1| hypothetical protein hp908_0757 [Helicobacter pylori 908]
gi|325996023|gb|ADZ51428.1| hypothetical protein hp2018_07263 [Helicobacter pylori 2018]
gi|325997618|gb|ADZ49826.1| hypothetical protein hp2017_07253 [Helicobacter pylori 2017]
Length = 171
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 15/90 (16%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYS-VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSL 155
P + +LLMG +GSGKSSL+N ++ ++++G+ + I Y++E
Sbjct: 59 PKMNVLLMGATGSGKSSLINALFGEEIAKAGI-------GEPVTQHIEKYIDE------- 104
Query: 156 QSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
Q G ++D++G H+ ++ + M E
Sbjct: 105 QKGLILWDTQGIEAADYHDTMQSIKQRMEE 134
>gi|299770409|ref|YP_003732435.1| lipid A export permease/ATP-binding protein MsbA [Acinetobacter
oleivorans DR1]
gi|298700497|gb|ADI91062.1| lipid A export permease/ATP-binding protein MsbA [Acinetobacter
oleivorans DR1]
Length = 575
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 31/103 (30%)
Query: 37 LDLP---NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93
LDLP N L P+L +G H L+Y G + I+ +
Sbjct: 316 LDLPEEQNNGQLKPKL--------------NGAIRFDHVTLNYADG-----VAAIKDFSL 356
Query: 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG 136
DI P T+ L+G SG+GKSSLVN+ LV F + SSG
Sbjct: 357 DILPGQTVALVGRSGAGKSSLVNM---------LVRFQEVSSG 390
>gi|443629359|ref|ZP_21113689.1| putative ABC transporter ATP-binding protein [Streptomyces
viridochromogenes Tue57]
gi|443337098|gb|ELS51410.1| putative ABC transporter ATP-binding protein [Streptomyces
viridochromogenes Tue57]
Length = 593
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 14 DPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA---LIAPDGLNELR 70
DP L+ W +DE L + VS RL +R++E A +APDG + L
Sbjct: 312 DPVNLILRW------YDE-----LQVAQVSL--ARLVGVRDIEPDAGEETLAPDGRDVLA 358
Query: 71 HKF-LSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-------L 122
+ YR G + ++K +++ P + L+G SG+GKS+L L+ + +
Sbjct: 359 ERVHFGYREG-----VDVLRKVSLEVAPGTRLALVGPSGAGKSTLGRLLAGIYAPRDGRI 413
Query: 123 SRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168
+ G L T+ SH + E H + SL+ + D++ +
Sbjct: 414 TLGGAELSRMTAERVRSHVALVNQEHHVFVGSLRDNLLLADTKATD 459
>gi|387900985|ref|YP_006331324.1| methionine ABC transporter [Burkholderia sp. KJ006]
gi|387575877|gb|AFJ84593.1| Methionine ABC transporter [Burkholderia sp. KJ006]
Length = 232
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
L E+RH SYR G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 8 LVEIRHVAKSYRRGNQVVPV--LTDITLDIAAGDFVALMGPSGSGKSTLLNLVAGI 61
>gi|134294399|ref|YP_001118134.1| ABC transporter-like protein [Burkholderia vietnamiensis G4]
gi|134137556|gb|ABO53299.1| ABC transporter related protein [Burkholderia vietnamiensis G4]
Length = 235
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
L E+RH SYR G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 11 LVEIRHVAKSYRRGNQVVPV--LTDITLDIAAGDFVALMGPSGSGKSTLLNLVAGI 64
>gi|402565023|ref|YP_006614368.1| ABC transporter [Burkholderia cepacia GG4]
gi|402246220|gb|AFQ46674.1| ABC transporter [Burkholderia cepacia GG4]
Length = 235
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L E+ H SYR G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 7 APPPLVEISHVAKSYRRGNQIVPV--LTDITLDIGAGDFVALMGPSGSGKSTLLNLVAGI 64
>gi|357414820|ref|YP_004926556.1| ABC transporter [Streptomyces flavogriseus ATCC 33331]
gi|320012189|gb|ADW07039.1| ABC transporter transmembrane region [Streptomyces flavogriseus
ATCC 33331]
Length = 593
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 14 DPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA---LIAPDGLNELR 70
DP GL+ W +DE ++ L RL +RE+E A L+ PDG E+R
Sbjct: 312 DPIGLILRW------YDELQVAQVSLA-------RLVGVREIEPDAGDDLVGPDG-REVR 357
Query: 71 HKFL--SYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV------- 121
+ + YR+G + + + +D+ P + L+G SG+GKS+L L+ +
Sbjct: 358 AEEVRFGYRAG-----VDVLHEVSLDVAPGTRLALVGPSGAGKSTLGRLLAGIYAPRAGS 412
Query: 122 LSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV 161
+S G L T+ +H + E H + SL+ +
Sbjct: 413 VSLGGAELSRMTAERVRTHVALVNQEHHVFVGSLRDNLLL 452
>gi|169633366|ref|YP_001707102.1| lipid ABC transporter membrane/ATP-binding protein [Acinetobacter
baumannii SDF]
gi|169152158|emb|CAP01061.1| lipid transport protein, flippase (ABC superfamily, membrane
(N-terminal), atp_bind (C-terminal)) [Acinetobacter
baumannii]
Length = 575
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 31/104 (29%)
Query: 37 LDLP---NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93
LDLP N L P+L+ G H L+Y G I+ +
Sbjct: 316 LDLPEEQNSGELKPQLQ--------------GAIRFDHVVLNYADGT-----QAIKDFSL 356
Query: 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN 137
DI P T+ L+G SG+GK+SLVN+ LVLF + SSG
Sbjct: 357 DIRPGETVALVGRSGAGKTSLVNM---------LVLFQEVSSGQ 391
>gi|261854852|ref|YP_003262135.1| lipoprotein releasing system, ATP-binding protein [Halothiobacillus
neapolitanus c2]
gi|261835321|gb|ACX95088.1| lipoprotein releasing system, ATP-binding protein [Halothiobacillus
neapolitanus c2]
Length = 235
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 12/61 (19%)
Query: 63 PDGLNELRHKFLSYRSGDFWIPIG-----GIQKGGMDIPPVITILLMGFSGSGKSSLVNL 117
PD + E RH +YR GD +P+ ++KG M + ++G SGSGKSSL+ L
Sbjct: 11 PDIVLETRHLHRTYREGDLVVPVLKGIDLAVKKGEM-------LAIVGASGSGKSSLLQL 63
Query: 118 M 118
M
Sbjct: 64 M 64
>gi|21244218|ref|NP_643800.1| ribosome-associated GTPase [Xanthomonas axonopodis pv. citri str.
306]
gi|38257668|sp|Q8PGW9.1|RSGA_XANAC RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|21109858|gb|AAM38336.1| integral membrane nucleotide protein [Xanthomonas axonopodis pv.
citri str. 306]
Length = 363
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 13/160 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A ID +
Sbjct: 258 CLIDTPGMRELKP-TGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIDAGELD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFS 254
P+ V + M V++ AE A +++ + KR S
Sbjct: 317 PERVANYMKLRMEVASAAEKLATRVAQNNRGKGSGKRPAS 356
>gi|420417072|ref|ZP_14916177.1| hypothetical protein HPNQ4044_0997 [Helicobacter pylori NQ4044]
gi|393034903|gb|EJB35953.1| hypothetical protein HPNQ4044_0997 [Helicobacter pylori NQ4044]
Length = 363
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
+ ILLMG++GSGKSSL+N ++ + + IT ++E++ + G
Sbjct: 1 MNILLMGYTGSGKSSLINALFG----------KEIAKAGVGKPITQHLEKY---IDEEKG 47
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSE 185
++D++G H+ ++ + M +
Sbjct: 48 LVLWDTKGIEDKDYHDTMQSIKKEMED 74
>gi|420480776|ref|ZP_14979419.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-1]
gi|420511275|ref|ZP_15009762.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-1b]
gi|393096792|gb|EJB97389.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-1]
gi|393119759|gb|EJC20249.1| GTPase of unknown function family protein [Helicobacter pylori Hp
P-1b]
Length = 155
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSL 155
P++ ILLMG +G GKSSL+N ++ + + IT ++E++
Sbjct: 44 KPIMNILLMGATGVGKSSLINALFG----------KEVAKAGVGKPITQHLEKY---VDE 90
Query: 156 QSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
+ G ++D++G H+ ++ + M +
Sbjct: 91 EKGLVLWDTQGIEAADYHDTMQSIKKEMED 120
>gi|313669265|ref|YP_004049549.1| ABC transporter [Neisseria lactamica 020-06]
gi|313006727|emb|CBN88197.1| putative ABC transporter [Neisseria lactamica 020-06]
Length = 618
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 20 YCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSG 79
Y W SA F+ + ++TL+ +L + + L L P G + H SY +G
Sbjct: 320 YIMWESARLFENIGTIN---DGMATLSKPHTILDKPQALPLNVPQGAIKFEHVDFSYEAG 376
Query: 80 DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
P+ + ++I P + L+G SG+GKS++VNL+
Sbjct: 377 K---PL--LNGFNLNIKPGEKVGLIGRSGAGKSTIVNLL 410
>gi|420458583|ref|ZP_14957393.1| hypothetical protein HPHPA26_0751 [Helicobacter pylori Hp A-26]
gi|393076104|gb|EJB76858.1| hypothetical protein HPHPA26_0751 [Helicobacter pylori Hp A-26]
Length = 146
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 15/88 (17%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSV-LSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQS 157
+ ILLMG++GSGKSSL+N ++ ++++G+ IT ++E++ Q
Sbjct: 38 MNILLMGYTGSGKSSLINALFGKEIAKAGV-----------GKPITQHLEKY---IDEQK 83
Query: 158 GFCVYDSRGFNYNRVHEGLEELSSWMSE 185
G ++D++G H+ ++ + M +
Sbjct: 84 GLILWDTKGIEGKDYHDTMQSIKKEMED 111
>gi|420463609|ref|ZP_14962386.1| hypothetical protein HPHPH4_0740 [Helicobacter pylori Hp H-4]
gi|393079952|gb|EJB80682.1| hypothetical protein HPHPH4_0740 [Helicobacter pylori Hp H-4]
Length = 109
Score = 39.7 bits (91), Expect = 2.8, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
+ IL MG++GSGKSSL+N ++ + + IT ++E++ + Q G
Sbjct: 1 MNILFMGYTGSGKSSLINALFG----------KEIAKAGVGKPITQHLEKY---INEQKG 47
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSE 185
+D++G H+ ++ + M +
Sbjct: 48 LVFWDTQGIEATDYHDTMQSIKQRMED 74
>gi|420457094|ref|ZP_14955912.1| hypothetical protein HPHPA16_0944 [Helicobacter pylori Hp A-16]
gi|393073920|gb|EJB74685.1| hypothetical protein HPHPA16_0944 [Helicobacter pylori Hp A-16]
Length = 154
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSL 155
P + +LLMG +GSGKSSL+N ++ + + IT ++E++
Sbjct: 43 KPKMNVLLMGATGSGKSSLINALFG----------EEIAKAGVGKPITQHLEKY---IDE 89
Query: 156 QSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
Q G ++D++G H+ ++ + M +
Sbjct: 90 QKGLILWDTQGIEAADYHDTMQSIKKEMED 119
>gi|218678709|ref|ZP_03526606.1| probable toxin secretion ABC transporter, ATP-binding protein
[Rhizobium etli CIAT 894]
Length = 240
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 57 RLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVN 116
RLAL AP GL E R+ YR G I + GI + I P + ++G SGSGKS+L
Sbjct: 29 RLALPAPRGLIEFRNVSFRYRPGGQDI-LKGIN---LQIRPGEVVGIVGASGSGKSTLTK 84
Query: 117 LMYSV-LSRSGLVLF 130
L+ + L+ G VL
Sbjct: 85 LIQRLYLASEGQVLL 99
>gi|420475718|ref|ZP_14974387.1| hypothetical protein HPHPH21_0912 [Helicobacter pylori Hp H-21]
gi|393091584|gb|EJB92211.1| hypothetical protein HPHPH21_0912 [Helicobacter pylori Hp H-21]
Length = 154
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSL 155
P + +LLMG +GSGKSSL+N ++ + + IT ++E++
Sbjct: 43 KPKMNVLLMGATGSGKSSLINALFG----------KEIAKAGVGKPITQHLEKY---VDE 89
Query: 156 QSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
Q G +D++G H+ ++ + M +
Sbjct: 90 QKGLVFWDTQGIEAADYHDTMQSIKKEMED 119
>gi|171317390|ref|ZP_02906584.1| ABC transporter related [Burkholderia ambifaria MEX-5]
gi|171097470|gb|EDT42310.1| ABC transporter related [Burkholderia ambifaria MEX-5]
Length = 235
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L E+ H SYR G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 7 APPPLVEISHVAKSYRRGNQVVPV--LTDITLDIGEGDFVALMGPSGSGKSTLLNLVAGI 64
>gi|375134563|ref|YP_004995213.1| lipid transport protein [Acinetobacter calcoaceticus PHEA-2]
gi|325122008|gb|ADY81531.1| lipid transport protein [Acinetobacter calcoaceticus PHEA-2]
Length = 575
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 31/103 (30%)
Query: 37 LDLP---NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93
LDLP N L P+L + +AL DG+ ++ DF +
Sbjct: 316 LDLPEEQNNGQLKPKLNGAIRFDHVALNYADGVQAIK---------DF----------SL 356
Query: 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG 136
DI P T+ L+G SG+GKSSLVN+ LV F + SSG
Sbjct: 357 DILPGQTVALVGRSGAGKSSLVNM---------LVRFQEVSSG 390
>gi|293608260|ref|ZP_06690563.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427426117|ref|ZP_18916183.1| lipid A export permease/ATP-binding protein MsbA [Acinetobacter
baumannii WC-136]
gi|292828833|gb|EFF87195.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425697067|gb|EKU66757.1| lipid A export permease/ATP-binding protein MsbA [Acinetobacter
baumannii WC-136]
Length = 575
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 31/103 (30%)
Query: 37 LDLP---NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93
LDLP N L P+L + +AL DG+ ++ DF +
Sbjct: 316 LDLPEEQNNGQLKPKLNGAIRFDHVALNYADGVQAIK---------DF----------SL 356
Query: 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG 136
DI P T+ L+G SG+GKSSLVN+ LV F + SSG
Sbjct: 357 DILPGQTVALVGRSGAGKSSLVNM---------LVRFQEVSSG 390
>gi|78064879|ref|YP_367648.1| efflux ABC transporter ATPase [Burkholderia sp. 383]
gi|77965624|gb|ABB07004.1| ABC efflux pump, ATPase subunit [Burkholderia sp. 383]
Length = 232
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L E+ H SYR G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 4 APPPLVEISHVAKSYRRGNQIVPV--LTDITLDIGEGDFVALMGPSGSGKSTLLNLVAGI 61
>gi|420420012|ref|ZP_14919099.1| hypothetical protein HPNQ4161_0509 [Helicobacter pylori NQ4161]
gi|393037248|gb|EJB38284.1| hypothetical protein HPNQ4161_0509 [Helicobacter pylori NQ4161]
Length = 119
Score = 39.3 bits (90), Expect = 3.4, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P++ ILLMG +G GKSSL+N ++ + + IT ++E++ Q
Sbjct: 13 PIMNILLMGATGVGKSSLINALFG----------KEIAKAGVGKPITQHLEKY---IDEQ 59
Query: 157 SGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
G ++D+ G H+ ++ + M +
Sbjct: 60 KGLILWDTNGIEDKDYHDTMQSIKKEMED 88
>gi|325926587|ref|ZP_08187901.1| ribosome small subunit-dependent GTPase A [Xanthomonas perforans
91-118]
gi|325542939|gb|EGD14388.1| ribosome small subunit-dependent GTPase A [Xanthomonas perforans
91-118]
Length = 363
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A ID +
Sbjct: 258 CLIDTPGMRELK-PTGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIDAGELD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + + V++ AE A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRVEVASAAEKLATRVAQNNRGKGSGKRPASVDRPGRR 363
>gi|319788315|ref|YP_004147790.1| ribosome small subunit-dependent GTPase A [Pseudoxanthomonas
suwonensis 11-1]
gi|317466827|gb|ADV28559.1| ribosome small subunit-dependent GTPase A [Pseudoxanthomonas
suwonensis 11-1]
Length = 371
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 97 PVITILLMGFSGSGKSSLVN-LMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSL 155
P T +L+G SG+GKS+L N L+ ++G V + S HT T H + L
Sbjct: 210 PGCTAVLVGSSGAGKSTLTNSLLGRERMKTGEV---RASDSRGRHTTT-----HRALVPL 261
Query: 156 QSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA 200
SG C+ D+ G + G EEL+ + R +DCA
Sbjct: 262 PSGACLVDTPGMRELK-PTGEEELADGAFGDIEELASQCRFNDCA 305
>gi|78049177|ref|YP_365352.1| ribosome-associated GTPase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|123584227|sp|Q3BPG1.1|RSGA_XANC5 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|78037607|emb|CAJ25352.1| putative GTPase [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 363
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRENDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----AEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A ID +
Sbjct: 258 CLIDTPGMRELK-PTGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVRAAIDAGELD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + + V++ AE A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRVEVASAAEKLATRVAQNNRGKGSGKRPASVDRPGRR 363
>gi|289662566|ref|ZP_06484147.1| ribosome-associated GTPase [Xanthomonas campestris pv. vasculorum
NCPPB 702]
gi|289667783|ref|ZP_06488858.1| ribosome-associated GTPase [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 363
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
T +L+G SG+GKS+L N + + A S G HT T H + L SG
Sbjct: 205 TAVLVGSSGAGKSTLTNTLLGTQKMKTNAVRANDSRGR--HTTT-----HRALIPLPSGA 257
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN-----DAEIDDLKSS 214
C+ D+ G + G E+L+ V R +DCA + A I+
Sbjct: 258 CLIDTPGMRELK-PTGEEDLAEGGFSDVEALAAQCRFNDCAHIAEPGCAVQAAIEADTLD 316
Query: 215 PKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA--PGLR 259
P+ V + + V++ AE A +++ + KR S PG R
Sbjct: 317 PERVANYMKLRVEVASAAEKLATRVAQNNRGSGSGKRPASGDRPGRR 363
>gi|218768953|ref|YP_002343465.1| ABC transporter [Neisseria meningitidis Z2491]
gi|433474744|ref|ZP_20432092.1| ABC transporter family protein [Neisseria meningitidis 88050]
gi|433478964|ref|ZP_20436263.1| ABC transporter family protein [Neisseria meningitidis 63041]
gi|433512628|ref|ZP_20469430.1| ABC transporter family protein [Neisseria meningitidis 63049]
gi|433514747|ref|ZP_20471523.1| ABC transporter family protein [Neisseria meningitidis 2004090]
gi|433516855|ref|ZP_20473608.1| ABC transporter family protein [Neisseria meningitidis 96023]
gi|433519045|ref|ZP_20475771.1| ABC transporter family protein [Neisseria meningitidis 65014]
gi|433523213|ref|ZP_20479885.1| ABC transporter family protein [Neisseria meningitidis 97020]
gi|433527434|ref|ZP_20484047.1| ABC transporter family protein [Neisseria meningitidis NM3652]
gi|433529527|ref|ZP_20486126.1| ABC transporter family protein [Neisseria meningitidis NM3642]
gi|433531645|ref|ZP_20488214.1| ABC transporter family protein [Neisseria meningitidis 2007056]
gi|433533725|ref|ZP_20490274.1| ABC transporter family protein [Neisseria meningitidis 2001212]
gi|433540200|ref|ZP_20496657.1| ABC transporter family protein [Neisseria meningitidis 63006]
gi|121052961|emb|CAM09315.1| putative ABC transporter [Neisseria meningitidis Z2491]
gi|432212804|gb|ELK68739.1| ABC transporter family protein [Neisseria meningitidis 88050]
gi|432218938|gb|ELK74790.1| ABC transporter family protein [Neisseria meningitidis 63041]
gi|432250383|gb|ELL05778.1| ABC transporter family protein [Neisseria meningitidis 63049]
gi|432256069|gb|ELL11394.1| ABC transporter family protein [Neisseria meningitidis 96023]
gi|432256411|gb|ELL11734.1| ABC transporter family protein [Neisseria meningitidis 2004090]
gi|432256786|gb|ELL12100.1| ABC transporter family protein [Neisseria meningitidis 65014]
gi|432262669|gb|ELL17905.1| ABC transporter family protein [Neisseria meningitidis 97020]
gi|432267503|gb|ELL22681.1| ABC transporter family protein [Neisseria meningitidis NM3652]
gi|432269665|gb|ELL24822.1| ABC transporter family protein [Neisseria meningitidis 2007056]
gi|432269778|gb|ELL24931.1| ABC transporter family protein [Neisseria meningitidis NM3642]
gi|432274278|gb|ELL29371.1| ABC transporter family protein [Neisseria meningitidis 2001212]
gi|432278181|gb|ELL33225.1| ABC transporter family protein [Neisseria meningitidis 63006]
Length = 618
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 20 YCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSG 79
Y W SA F+ + ++TL+ +L + + L L P G + H SY +G
Sbjct: 320 YIMWESARLFENIGTVG---DGMATLSKPHTILDKPQALPLNVPQGAIKFEHVDFSYEAG 376
Query: 80 DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130
P+ + ++I P + L+G SG+GKS++VNL+ +SG VL
Sbjct: 377 K---PL--LNGFNLNIKPGEKVGLIGRSGAGKSTIVNLLLRFYEPQSGTVLI 423
>gi|290969135|ref|ZP_06560660.1| ABC transporter, ATP-binding protein [Megasphaera genomosp. type_1
str. 28L]
gi|290780641|gb|EFD93244.1| ABC transporter, ATP-binding protein [Megasphaera genomosp. type_1
str. 28L]
Length = 571
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 45 LTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLM 104
LTPR+ R+ R+ A G H SY +G+ P+ +Q + P T+ ++
Sbjct: 312 LTPRITDRRDARRMP--AHSGTIRFSHICFSYVAGE---PV--LQDVSFSVEPGKTVAIV 364
Query: 105 GFSGSGKSSLVNLM 118
G +GSGKSSLVNL+
Sbjct: 365 GETGSGKSSLVNLL 378
>gi|420412321|ref|ZP_14911450.1| hypothetical protein HPNQ4228_1214 [Helicobacter pylori NQ4228]
gi|393027979|gb|EJB29067.1| hypothetical protein HPNQ4228_1214 [Helicobacter pylori NQ4228]
Length = 156
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P + +LLMG +G GKSSL+N ++ + + IT ++E++ Q
Sbjct: 44 PKMNVLLMGATGVGKSSLINALFG----------KEIAKAGVGKPITQHLEKY---IDEQ 90
Query: 157 SGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
G ++D++G H+ ++ + M E
Sbjct: 91 KGLILWDTKGIEAADYHDTMQSIKQRMEE 119
>gi|385338837|ref|YP_005892710.1| Lipid A export ATP-binding/permease protein msbA [Neisseria
meningitidis WUE 2594]
gi|319411251|emb|CBY91658.1| Lipid A export ATP-binding/permease protein msbA [Neisseria
meningitidis WUE 2594]
Length = 630
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 20 YCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSG 79
Y W SA F+ + ++TL+ +L + + L L P G + H SY +G
Sbjct: 332 YIMWESARLFENIGTVG---DGMATLSKPHTILDKPQALPLNVPQGAIKFEHVDFSYEAG 388
Query: 80 DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130
P+ + ++I P + L+G SG+GKS++VNL+ +SG VL
Sbjct: 389 K---PL--LNGFNLNIKPGEKVGLIGRSGAGKSTIVNLLLRFYEPQSGTVLI 435
>gi|107024347|ref|YP_622674.1| ABC transporter [Burkholderia cenocepacia AU 1054]
gi|105894536|gb|ABF77701.1| ABC transporter related protein [Burkholderia cenocepacia AU 1054]
Length = 232
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L EL H SY+ G+ +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 4 APTPLVELSHVAKSYQRGNQIVPV--LTDISLDIGEGDFVALMGPSGSGKSTLLNLVAGI 61
>gi|402569279|ref|YP_006618623.1| cysteine ABC transporter permease/ATP-binding protein [Burkholderia
cepacia GG4]
gi|402250476|gb|AFQ50929.1| cysteine ABC transporter permease/ATP-binding protein [Burkholderia
cepacia GG4]
Length = 1180
Score = 38.9 bits (89), Expect = 4.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 50 RVLREMERLALIAPDGLNELR-HKFLSYRSGDFWIP---IGGIQKGGMDIPPVITILLMG 105
R LR +E+ + DG L + + + DF P + I + ++PP T+ L+G
Sbjct: 913 RRLRALEKEPVTVVDGTQALSGNATVRFEEADFTYPGRAVPAIDRVSFEVPPGSTVALVG 972
Query: 106 FSGSGKSSLVNLM 118
SG+GKS++ +L+
Sbjct: 973 ASGAGKSTVASLL 985
>gi|423419991|ref|ZP_17397080.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG3X2-1]
gi|401101900|gb|EJQ09887.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG3X2-1]
Length = 349
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVN-LMYSVLSRSGLVLFAQTSSGNSSHTITM 144
GI+ + P TI L+G SG+GKS+L+N L+ +V++++G + + HT T
Sbjct: 181 AGIESLQQFVSPGKTIALVGSSGAGKSTLLNALIGTVVAKTGDI---REEDSKGRHTTT- 236
Query: 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN 204
H + L SG V D+ G ++ EG + + S+ C R DC K+
Sbjct: 237 ----HRELFQLPSGGLVIDTPGMRELQLWEGSAAIQTAFSDIEDLANTC-RFRDC---KH 288
Query: 205 DAE 207
D E
Sbjct: 289 DGE 291
>gi|420455159|ref|ZP_14953989.1| hypothetical protein HPHPA14_0591 [Helicobacter pylori Hp A-14]
gi|393073509|gb|EJB74283.1| hypothetical protein HPHPA14_0591 [Helicobacter pylori Hp A-14]
Length = 150
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSL 155
P + ILLMG +G GKSSL+N ++ A+T G S IT ++E++
Sbjct: 43 KPKMNILLMGATGVGKSSLINALFG-------EEIAKTGVGES---ITQHLEKY---VDE 89
Query: 156 QSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
+ G ++D++G H+ ++ + M +
Sbjct: 90 KKGLILWDTKGIEGKDYHDTMQSIKKEMED 119
>gi|423391677|ref|ZP_17368903.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG1X1-3]
gi|401637510|gb|EJS55263.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG1X1-3]
Length = 349
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVN-LMYSVLSRSGLVLFAQTSSGNSSHTITMY 145
GI+ + P TI L+G SG+GKS+L+N L+ +V++++G + + HT T
Sbjct: 182 GIESLQQFVSPGKTIALVGSSGAGKSTLLNALIGTVVAKTGDI---REEDSKGRHTTT-- 236
Query: 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND 205
H + L SG V D+ G ++ EG + + S+ C R DC K+D
Sbjct: 237 ---HRELFQLPSGGLVIDTPGMRELQLWEGNAAIQTAFSDIEDLANTC-RFRDC---KHD 289
Query: 206 AE 207
E
Sbjct: 290 GE 291
>gi|365874466|ref|ZP_09413999.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase
component [Thermanaerovibrio velox DSM 12556]
gi|363984553|gb|EHM10760.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase
component [Thermanaerovibrio velox DSM 12556]
Length = 248
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-L 122
D + ELR F ++R+G + ++ + +P + ++G SGSGK++++ +M + +
Sbjct: 5 DVVLELRGVFKTFRAGKMRVE--ALKGVSLTVPRGSFVAVVGASGSGKTTMLRIMGGLEI 62
Query: 123 SRSGLVLFAQTSSGNSSHTITMYMEEHNV 151
G VL S G H + M +EH +
Sbjct: 63 PDRGEVLLRPASQGCPRHPVGMVFQEHRL 91
>gi|258516405|ref|YP_003192627.1| ABC transporter [Desulfotomaculum acetoxidans DSM 771]
gi|257780110|gb|ACV64004.1| ABC transporter related [Desulfotomaculum acetoxidans DSM 771]
Length = 594
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 5 LSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALIAPD 64
S E+ + +P + SA + ++ L N++ P R RE+E L A +
Sbjct: 279 FSAIEIFKLNPQEFIVISVISARLWPRLSSFQMGLQNINNTLPAFRAARELENQCLAAGE 338
Query: 65 GL--NELRHKF-----LSYRSGDFWIPIGGIQKG----GMDIPPVITILLMGFSGSGKSS 113
L NE K + +R+ F+ I + +P TI +G SG+GKS+
Sbjct: 339 RLPENEASKKIDLYHGVQFRNVSFYYDSSSINYSLNELNLFLPAGRTIAFVGVSGAGKST 398
Query: 114 LVNLMYSVL 122
+V+L+ +L
Sbjct: 399 VVDLLIGLL 407
>gi|422418931|ref|ZP_16495886.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
N1-067]
gi|313633395|gb|EFS00233.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
N1-067]
Length = 351
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLM--YSVLSRSGLVLFAQTSSGNSSHTITM 144
G + D+ P T++L+G SG GKSS +N + +++ SG+ + HT T
Sbjct: 176 GFEALEHDLKPRSTLVLLGSSGVGKSSFINALAGKTLMKTSGI----REDDSKGKHTTT- 230
Query: 145 YMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL 201
H M L++G+ V D+ R F GLE S + + H C R +DC+
Sbjct: 231 ----HREMHLLENGWIVIDTPGMREFGIGLNQAGLETTFSDVEKLTEH---C-RFNDCSH 282
Query: 202 MK 203
K
Sbjct: 283 TK 284
>gi|422421993|ref|ZP_16498946.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
S4-171]
gi|313638086|gb|EFS03355.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
S4-171]
Length = 351
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLM--YSVLSRSGLVLFAQTSSGNSSHTITM 144
G + D+ P T++L+G SG GKSS +N + +++ SG+ + HT T
Sbjct: 176 GFEALEHDLKPRSTLVLLGSSGVGKSSFINALAGKTLMKTSGI----REDDSKGKHTTT- 230
Query: 145 YMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL 201
H M L++G+ V D+ R F GLE S + + H C R +DC+
Sbjct: 231 ----HREMHLLENGWIVIDTPGMREFGIGLNQAGLETTFSDVEKLTEH---C-RFNDCSH 282
Query: 202 MK 203
K
Sbjct: 283 TK 284
>gi|365093246|ref|ZP_09330313.1| ABC transporter-like protein [Acidovorax sp. NO-1]
gi|363414629|gb|EHL21777.1| ABC transporter-like protein [Acidovorax sp. NO-1]
Length = 248
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 59 ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
AL A D + R +Y++G+ + + + +DI ++L+G SGSGKS+L+N++
Sbjct: 11 ALPAADVVFHARDLCKTYQTGE--VQVRALHGVNLDIVRGEFVVLLGASGSGKSTLLNIL 68
Query: 119 YSV-LSRSGLVLFAQTS-SGNSSHTITMYMEEH 149
+ + SG V FA + SG S +T Y EH
Sbjct: 69 GGLDVPTSGEVRFADHALSGASESELTAYRREH 101
>gi|161523386|ref|YP_001578398.1| ABC transporter-like protein [Burkholderia multivorans ATCC 17616]
gi|189351841|ref|YP_001947469.1| ABC-type antimicrobial peptide transporter ATPase [Burkholderia
multivorans ATCC 17616]
gi|421475579|ref|ZP_15923520.1| ABC transporter, ATP-binding protein [Burkholderia multivorans CF2]
gi|160340815|gb|ABX13901.1| ABC transporter related [Burkholderia multivorans ATCC 17616]
gi|189335863|dbj|BAG44933.1| ABC-type antimicrobial peptide transport system ATPase component
[Burkholderia multivorans ATCC 17616]
gi|400229915|gb|EJO59742.1| ABC transporter, ATP-binding protein [Burkholderia multivorans CF2]
Length = 232
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121
AP L E+ H SYR G +P+ + +DI + LMG SGSGKS+L+NL+ +
Sbjct: 4 APPPLVEISHVAKSYRRGSQVVPV--LTDITLDIGEGDFVALMGPSGSGKSTLLNLVAGI 61
>gi|73670189|ref|YP_306204.1| hypothetical protein Mbar_A2720 [Methanosarcina barkeri str.
Fusaro]
gi|72397351|gb|AAZ71624.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 369
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 21 CWWRSAA---KFDECVKLKLDLPNVSTLTPRLRVLREMER-LALIAPDGLN--------- 67
C R AA ++ + + LD + T + LR +ER LA++ G N
Sbjct: 105 CLSRGAAGDGSGEQVIAVNLDTIFIVTSVGKDLNLRRLERYLAIVYSSGANPVILLNKID 164
Query: 68 ------ELRHKFLSYRSGDFWIPIGGIQKGGMD-----IPPVITILLMGFSGSGKSSLVN 116
L K S IP+ + K G+D + P T+ L+G SG GKS+L+N
Sbjct: 165 LEDKPTRLVEKIQSITGDVPVIPLSALSKTGLDELSPYLNPGETVALIGSSGVGKSTLIN 224
Query: 117 -LMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175
L+ + ++G + + HT T+ + L +G + D+ G ++ +
Sbjct: 225 ALLGETVQKTGDI---RKDDEKGRHTTTVRQ-----LFLLSNGAVLIDNPGIREIQLGDS 276
Query: 176 LEELSSWMSEGVHHNQRCLRSD-------DCALMK 203
+ L SE V + C D CA++K
Sbjct: 277 ADGLEKAFSEIVDAARNCKFKDCTHRDEPGCAVLK 311
>gi|420470607|ref|ZP_14969316.1| hypothetical protein HPHPH11_0963 [Helicobacter pylori Hp H-11]
gi|393086040|gb|EJB86719.1| hypothetical protein HPHPH11_0963 [Helicobacter pylori Hp H-11]
Length = 146
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
+ ILLMG++GSGKSSL+N ++ + + IT ++E++ + G
Sbjct: 38 MNILLMGYTGSGKSSLINALFG----------EEIAKAGVGKPITQHLEKY---VDEEKG 84
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSE 185
++D++G H+ ++ + M +
Sbjct: 85 LILWDTKGIEDKDYHDTMQSIKKEMED 111
>gi|261400493|ref|ZP_05986618.1| acyl-phosphate glycerol 3-phosphate acyltransferase [Neisseria
lactamica ATCC 23970]
gi|269209753|gb|EEZ76208.1| acyl-phosphate glycerol 3-phosphate acyltransferase [Neisseria
lactamica ATCC 23970]
Length = 618
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 20 YCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSG 79
Y W SA F+ + ++TL+ +L + L L P G + H SY +G
Sbjct: 320 YIMWESARLFENIGTVN---DGMATLSKPHTILDKPRALPLKVPQGAIKFEHVDFSYEAG 376
Query: 80 DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
P+ + ++I P + L+G SG+GKS++VNL+
Sbjct: 377 K---PL--LNGFNLNIKPGEKVGLIGRSGAGKSTIVNLL 410
>gi|190014660|ref|YP_001967424.1| LecD [Agrobacterium tumefaciens]
gi|71849463|gb|AAZ50411.1| LecD [Agrobacterium tumefaciens]
Length = 618
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKS----SLVNLMYSVLSR 124
+R+ S+R+GD W P+ ++ DI P T+ ++G SGSGKS S++ L+ SR
Sbjct: 21 VRNLTTSFRAGDTWNPV--VRNISFDITPKETVAIVGESGSGKSVTSLSIMRLLSEASSR 78
Query: 125 -SGLVLFA 131
G VL +
Sbjct: 79 IEGQVLLS 86
>gi|406938928|gb|EKD72053.1| hypothetical protein ACD_46C00022G0001 [uncultured bacterium]
Length = 596
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 13/104 (12%)
Query: 34 KLKLDLPNVSTLTPRLRVLREMERLALI-APDG---LNELRHKFLSYRSGDFWIPIG--- 86
+++ P +S + ++L E+E A+ A DG +E++ L YR P
Sbjct: 317 QIRFSYPTMSCIYQEFQILTELEHEAIPPACDGKLLFSEIQIHHLHYRY-----PTSKKD 371
Query: 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129
I M IP +I L+G SGSGKS+LVN++ +L +SG +L
Sbjct: 372 AISDINMTIPKGQSIGLIGASGSGKSTLVNILLGLLPIQSGQIL 415
>gi|451820207|ref|YP_007456408.1| dihydrodipicolinate reductase DapB [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451786186|gb|AGF57154.1| dihydrodipicolinate reductase DapB [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 251
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 188 HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLD 247
HHNQ+ ALM DA + +K + YV R A N I+ A++ G +
Sbjct: 141 HHNQKVDAPSGTALMLADAAKESIKDTTTYVYGREGNAKREENEIGIH-AVRGGGI--IG 197
Query: 248 ATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEYLGVSEISGVYDI 302
+ +F+ G ++ LTH +S E LK CEY+ I G+YD+
Sbjct: 198 DHEVIFAGTG-------EVIELTH-KAISREVFAVGALKACEYMATVTIPGLYDM 244
>gi|229017344|ref|ZP_04174247.1| GTPase [Bacillus cereus AH1273]
gi|229023520|ref|ZP_04180016.1| GTPase [Bacillus cereus AH1272]
gi|228737788|gb|EEL88288.1| GTPase [Bacillus cereus AH1272]
gi|228743907|gb|EEL94006.1| GTPase [Bacillus cereus AH1273]
Length = 349
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVN-LMYSVLSRSGLVLFAQTSSGNSSHTITMY 145
GI+ + P TI L+G SG+GKS+L+N L+ +V++++G + + HT T
Sbjct: 182 GIESLQQFVSPGKTIALVGSSGAGKSTLLNALIGTVVAKTGDI---REEDSKGRHTTT-- 236
Query: 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND 205
H + L SG + D+ G ++ EG + + S+ C R DC K+D
Sbjct: 237 ---HRELFQLPSGGLIIDTPGMRELQLWEGNAAIQTAFSDIEDLANTC-RFRDC---KHD 289
Query: 206 AE 207
E
Sbjct: 290 GE 291
>gi|282554643|ref|YP_003347660.1| hypothetical protein [Klebsiella phage KP34]
gi|262410476|gb|ACY66740.1| conserved hypothetical protein [Klebsiella phage KP34]
Length = 655
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 60 LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96
++ P+G N L K Y SGD+W P G+Q G D P
Sbjct: 111 VVLPEGANALPMKESMYSSGDYWTPFQGLQMQGADHP 147
>gi|423397267|ref|ZP_17374468.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-1]
gi|423408103|ref|ZP_17385252.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-3]
gi|401650161|gb|EJS67735.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-1]
gi|401658541|gb|EJS76037.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-3]
Length = 349
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 31/170 (18%)
Query: 52 LREMERLALIAPD------------GL-NELRHKFLSYRSGDFWIPI---GGIQKGGMD- 94
+R MER L+A + GL N++ K + + +PI ++ G+D
Sbjct: 126 VRRMERYLLLAYESGAMPVIVLTKSGLCNDVEQKIVETEAVAIGVPIFVVDSLEHTGIDS 185
Query: 95 ----IPPVITILLMGFSGSGKSSLVNLMYSV-LSRSGLVLFAQTSSGNSSHTITMYMEEH 149
+ P TI L+G SG GKS+L+N + + ++++G + + HT T H
Sbjct: 186 LKQFVSPGKTIALVGSSGVGKSTLLNALIGIEVAKTGDI---REEDSKGRHTTT-----H 237
Query: 150 NVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDC 199
+ L SG + D+ G ++ EG + + + S+ + + R DC
Sbjct: 238 RELFQLPSGALIIDTPGMRELQLWEGSDAIQTTFSD-IEELAKICRFRDC 286
>gi|315634411|ref|ZP_07889698.1| molybdate ABC superfamily ATP binding cassette transporter, ABC
protein [Aggregatibacter segnis ATCC 33393]
gi|315477001|gb|EFU67746.1| molybdate ABC superfamily ATP binding cassette transporter, ABC
protein [Aggregatibacter segnis ATCC 33393]
Length = 353
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNV 151
+DIP L G SGSGKSSL+NL+ +++ G++ NS+ + + + + N+
Sbjct: 19 LDIPSQGVTALFGLSGSGKSSLINLVSGLINPDEGVISLNDRELFNSAENVCVPINQRNI 78
Query: 152 MRSLQSGFCVYDSRGFNYNRVHEGL 176
G+ D+R F + V+ L
Sbjct: 79 ------GYVFQDARLFPHYTVNGNL 97
>gi|299748822|ref|XP_001840173.2| hypothetical protein CC1G_02636 [Coprinopsis cinerea okayama7#130]
gi|298408150|gb|EAU81620.2| hypothetical protein CC1G_02636 [Coprinopsis cinerea okayama7#130]
Length = 364
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 16/103 (15%)
Query: 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEH 149
K G+D P + ++L G +G GKSS++N++ R G+ +S+H
Sbjct: 79 KPGVDRPRIKNVVLFGETGVGKSSVINMI-----REGITTALDDQGASSTHG-------- 125
Query: 150 NVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQR 192
+ S ++ C + S+G Y V +G EE W + G++ QR
Sbjct: 126 EALVSSRAVGCTFSSQG--YPAVLDG-EEYLFWDTAGLNEGQR 165
>gi|319793385|ref|YP_004155025.1| lipid a ABC exporter, fused ATPase and inner membrane subunits msba
[Variovorax paradoxus EPS]
gi|315595848|gb|ADU36914.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
[Variovorax paradoxus EPS]
Length = 594
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123
DG ELR+ +SYR D + G+ + I P + +G SGSGK++LVNL+ +
Sbjct: 343 DGHIELRNVQVSYRGDDEQRALDGV---SLTIQPGQVVAFVGPSGSGKTTLVNLLPRFVQ 399
Query: 124 RSG 126
SG
Sbjct: 400 PSG 402
>gi|406039413|ref|ZP_11046768.1| lipid transport protein flippase [Acinetobacter ursingii DSM 16037
= CIP 107286]
Length = 575
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 31/104 (29%)
Query: 37 LDLP---NVSTLTPRLRVLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93
LDLP N TL P L+ G H L Y+S + IQ +
Sbjct: 316 LDLPEEKNTGTLKPELK--------------GNIRFDHVGLVYKS-----DVHAIQDFTL 356
Query: 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN 137
+I TI L+G SG+GK+SLVNL LV F +T+SG
Sbjct: 357 NIKSGETIALVGRSGAGKTSLVNL---------LVRFQETTSGQ 391
>gi|371777219|ref|ZP_09483541.1| ABC transporter-like protein [Anaerophaga sp. HS1]
Length = 598
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT----SSGNSSHTITMYMEEHNVM-- 152
+I MG SGSGK++L+NLM + G + T S+ + H + Y+++ +
Sbjct: 395 SIGFMGPSGSGKTTLMNLMLGFWTPNKGSFMVDDTPIKPSNLKAWHKLVGYVQQEVYLID 454
Query: 153 RSLQSGFCV-YDSRGFNYNRVHEGLEELSSW-----MSEGVHHN 190
SL DS+ N+NR+ + L++ S W + EGVH N
Sbjct: 455 ASLAENVAFGVDSKNINHNRLEQVLKKTSLWDMVQELPEGVHTN 498
>gi|326336742|ref|ZP_08202910.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit
[Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325691212|gb|EGD33183.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit
[Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 467
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 101 ILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
LL GF+G+GK++L+N + VL +VL A T G ++ IT Y ++
Sbjct: 42 FLLRGFAGTGKTTLINTLVKVLGSLSKKIVLLAPT--GRAAKVITSYAKQKAFTIHKYIY 99
Query: 159 FCVYDSRGFNYN-RVHEGLEEL-----SSWMSEGVHHNQRCLRSD 197
+ + GF +N R ++ + L +S + EG + R L SD
Sbjct: 100 QPINEESGFFFNLRTNKASDTLFIVDEASMIGEGANFGSRSLLSD 144
>gi|336395841|ref|ZP_08577240.1| UvrA [Lactobacillus farciminis KCTC 3681]
Length = 754
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 72 KFLSYRSGDFWIPIGGIQKGGMD-----IPPVITILLMGFSGSGKSSLVNLMYSVLSRSG 126
KF R WI + I ++ IP + ++ G +GSGKS+LVN +S
Sbjct: 447 KFRQPRKVSDWISVQNITSHNLNKVSARIPKGVLTVVSGPAGSGKSTLVNAFKQQMSGMD 506
Query: 127 LVLFAQTSSG-NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYN 170
V +Q S G N T Y+ N +R L + ++ F+YN
Sbjct: 507 YVDLSQDSVGVNIRSTPATYLNILNPLRKLFANANKVSTQLFSYN 551
>gi|241764114|ref|ZP_04762151.1| ABC transporter related protein [Acidovorax delafieldii 2AN]
gi|241366578|gb|EER61066.1| ABC transporter related protein [Acidovorax delafieldii 2AN]
Length = 248
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 75 SYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LSRSGLVLFAQT 133
+Y++G+ + + + +DI ++L+G SGSGKS+L+N++ + + SG V FA
Sbjct: 27 TYQTGE--VQVRALHDVDLDIVRGEFVVLLGASGSGKSTLLNILGGLDVPTSGEVRFADH 84
Query: 134 S-SGNSSHTITMYMEEH 149
+ SG S +T Y EH
Sbjct: 85 ALSGASESELTAYRREH 101
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,937,617,876
Number of Sequences: 23463169
Number of extensions: 243786873
Number of successful extensions: 838475
Number of sequences better than 100.0: 182
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 838356
Number of HSP's gapped (non-prelim): 190
length of query: 382
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 238
effective length of database: 8,980,499,031
effective search space: 2137358769378
effective search space used: 2137358769378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)