BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016817
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H32|A Chain A, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
pdb|3H32|D Chain D, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
Length = 197
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 129 LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL----EELSSWMS 184
LF + SH++T N+M L+ F ++R YNRV E L E L +
Sbjct: 73 LFEYQKNNKDSHSLTT-----NIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI 127
Query: 185 EGVHHNQ 191
E V H Q
Sbjct: 128 EKVQHIQ 134
>pdb|2P67|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM KINASE
Length = 341
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 37 LDLPNVSTLTPRLRVLREMERLALIAPDGLNEL---RHKFLSYRSGDFWIPIGGIQKGGM 93
+ L N +TL +R LR+ ER L L E RH+ LS + D +P G
Sbjct: 1 MSLINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCG------ 54
Query: 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGL 127
+ + + G G+GKS+ + +L R GL
Sbjct: 55 ---NTLRLGVTGTPGAGKSTFLEAFGMLLIREGL 85
>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 1092
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 262 NENPILI-LTHGDMLSTEERLDARLK---------ICEYLGVSEISGVYDIVCLTEYGFP 311
N NP I L G+ L+TEE + ++ +C+ + SEISG D + + F
Sbjct: 351 NNNPFQITLVKGNKLNTEETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFD 410
Query: 312 AEECDPVTAYSIAEAIYRAL 331
CD + A+Y L
Sbjct: 411 INICDLPRMARLCFAVYAVL 430
>pdb|1FWX|A Chain A, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|B Chain B, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|C Chain C, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|D Chain D, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
Length = 595
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 226 MVVSNIAEIYKALKAGDSKPLDATK 250
+VV NIAEI KA+ AGD + L+ K
Sbjct: 233 IVVFNIAEIEKAIAAGDYQELNGVK 257
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 74 LSYRSGDFWIP---IGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
L +R+ F P + ++ + IP T+ L+G SGSGKS++ +L+
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>pdb|3FHD|A Chain A, Crystal Structure Of The Shutoff And Exonuclease Protein
From Kaposis Sarcoma Associated Herpesvirus
Length = 508
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 299 VYDIVCLTEYGFPAEECDPVTAYSIAEAIYRA 330
VY+I C +Y F ECDP+ Y+ + +Y A
Sbjct: 264 VYEIKCRFKYTFAKMECDPI--YAAYQRLYEA 293
>pdb|3POV|A Chain A, Crystal Structure Of A Sox-Dna Complex
Length = 488
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 299 VYDIVCLTEYGFPAEECDPVTAYSIAEAIYRA 330
VY+I C +Y F ECDP+ Y+ + +Y A
Sbjct: 244 VYEIKCRFKYTFAKMECDPI--YAAYQRLYEA 273
>pdb|4GXW|A Chain A, Crystal Structure Of A Cog1816 Amidohydrolase (Target
Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
pdb|4GXW|B Chain B, Crystal Structure Of A Cog1816 Amidohydrolase (Target
Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
Length = 380
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 49 LRVLREMERLALIAPDGLNELRHKFLSYRSGD-------FWIPIGGIQKGGMDIPPVITI 101
L VLR ++R L PD L + +++L + FW P G ++ G+
Sbjct: 77 LHVLRALDRYLLTRPDDLRRIAYEYLEDAAAHNVRHAEFFWNPTGTVRVSGIPYADAQAA 136
Query: 102 LLMGFSGSGKS 112
++ G + +
Sbjct: 137 IVTGMRDAARD 147
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 95 IPPVITILLMGFSGSGKSSLVNL 117
IP T+ L+G SGSGKS++ NL
Sbjct: 366 IPQGKTVALVGRSGSGKSTIANL 388
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 95 IPPVITILLMGFSGSGKSSLVNLMYSVLSRSG 126
IP T L+G +GSGKS++ L+Y G
Sbjct: 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
>pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 117 LMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176
L + +S +VL + + N + +++E + + + FC Y N ++G
Sbjct: 289 LHFGQISSQRVVLEVEKAESNPG-SKKAFLDEILIWKEISDNFCYY-------NPGYDGF 340
Query: 177 EELSSWMSEGVHHNQRCLRSDDCALMKNDA 206
E SW E ++ ++ +RS L + +A
Sbjct: 341 ESFPSWAKESLNAHRNDVRSHIYTLEEFEA 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,327,248
Number of Sequences: 62578
Number of extensions: 455750
Number of successful extensions: 1260
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1254
Number of HSP's gapped (non-prelim): 16
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)