Query 016817
Match_columns 382
No_of_seqs 455 out of 2786
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 4.9E-59 1.1E-63 421.5 -4.4 217 65-302 1-226 (240)
2 COG1135 AbcC ABC-type metal io 100.0 6.7E-59 1.5E-63 439.8 -8.5 281 66-378 1-292 (339)
3 COG1125 OpuBA ABC-type proline 100.0 3.4E-55 7.3E-60 404.3 -6.7 219 66-304 1-228 (309)
4 COG3842 PotA ABC-type spermidi 100.0 5.1E-53 1.1E-57 413.3 -4.6 218 64-304 3-229 (352)
5 COG1136 SalX ABC-type antimicr 100.0 9.5E-53 2.1E-57 388.5 -4.8 212 66-290 1-217 (226)
6 COG1116 TauB ABC-type nitrate/ 100.0 3.8E-53 8.3E-58 392.4 -7.7 199 66-290 3-206 (248)
7 COG2884 FtsE Predicted ATPase 100.0 8.6E-52 1.9E-56 367.1 -3.2 207 66-290 1-212 (223)
8 COG3839 MalK ABC-type sugar tr 100.0 6.5E-52 1.4E-56 403.6 -8.1 216 66-304 3-226 (338)
9 COG1120 FepC ABC-type cobalami 100.0 4.2E-52 9.1E-57 391.2 -9.9 228 66-314 2-242 (258)
10 COG3638 ABC-type phosphate/pho 100.0 5.9E-51 1.3E-55 373.1 -6.0 209 65-290 2-223 (258)
11 COG1117 PstB ABC-type phosphat 100.0 6.5E-50 1.4E-54 361.0 -2.1 219 64-303 5-239 (253)
12 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.3E-50 2.8E-55 379.5 -8.2 219 65-309 3-236 (254)
13 COG1118 CysA ABC-type sulfate/ 100.0 4.3E-50 9.3E-55 379.2 -5.0 220 66-305 2-231 (345)
14 COG1127 Ttg2A ABC-type transpo 100.0 9.7E-50 2.1E-54 366.0 -6.4 221 63-301 5-235 (263)
15 COG1124 DppF ABC-type dipeptid 100.0 1.4E-49 3.1E-54 366.0 -6.3 220 65-300 2-230 (252)
16 TIGR02314 ABC_MetN D-methionin 100.0 3E-49 6.5E-54 390.2 -11.8 222 66-301 1-230 (343)
17 COG4181 Predicted ABC-type tra 100.0 3E-46 6.4E-51 326.8 -1.1 211 65-289 5-220 (228)
18 COG4598 HisP ABC-type histidin 100.0 1.9E-46 4E-51 330.5 -3.1 227 64-303 4-243 (256)
19 COG4175 ProV ABC-type proline/ 100.0 1.1E-46 2.3E-51 356.8 -6.1 207 87-304 43-257 (386)
20 PRK11432 fbpC ferric transport 100.0 3.9E-47 8.4E-52 376.5 -10.4 217 64-303 4-228 (351)
21 PRK11650 ugpC glycerol-3-phosp 100.0 3.6E-47 7.7E-52 377.5 -10.8 216 66-303 3-226 (356)
22 KOG0058 Peptide exporter, ABC 100.0 1E-46 2.2E-51 389.3 -8.1 250 24-300 416-690 (716)
23 COG3840 ThiQ ABC-type thiamine 100.0 1.8E-46 3.9E-51 331.1 -5.5 200 66-290 1-205 (231)
24 COG1122 CbiO ABC-type cobalt t 100.0 2.3E-46 4.9E-51 350.7 -6.3 217 65-301 2-228 (235)
25 TIGR03265 PhnT2 putative 2-ami 100.0 6.2E-47 1.4E-51 375.4 -11.0 216 65-303 3-226 (353)
26 COG0411 LivG ABC-type branched 100.0 1.4E-46 3E-51 346.5 -9.1 223 65-307 3-245 (250)
27 PRK09452 potA putrescine/sperm 100.0 1.7E-46 3.7E-51 374.6 -10.7 218 63-303 11-236 (375)
28 COG2274 SunT ABC-type bacterio 100.0 3.4E-46 7.3E-51 396.1 -10.4 249 24-300 421-695 (709)
29 TIGR03258 PhnT 2-aminoethylpho 100.0 2.7E-46 5.8E-51 371.8 -10.5 215 66-303 5-230 (362)
30 COG0444 DppD ABC-type dipeptid 100.0 1.4E-45 2.9E-50 352.8 -5.3 224 67-302 2-244 (316)
31 TIGR00960 3a0501s02 Type II (G 100.0 1.5E-45 3.3E-50 341.1 -7.4 208 66-290 1-213 (216)
32 PRK11607 potG putrescine trans 100.0 8.2E-46 1.8E-50 370.1 -10.6 217 64-303 17-241 (377)
33 COG4604 CeuD ABC-type enteroch 100.0 5E-45 1.1E-49 325.6 -5.3 228 66-314 1-239 (252)
34 COG4555 NatA ABC-type Na+ tran 100.0 5.1E-45 1.1E-49 326.6 -5.4 209 66-296 1-217 (245)
35 PRK10851 sulfate/thiosulfate t 100.0 1E-45 2.2E-50 366.7 -11.2 215 66-303 2-228 (353)
36 TIGR01186 proV glycine betaine 100.0 4.2E-45 9E-50 362.8 -7.1 205 87-302 8-220 (363)
37 PRK13537 nodulation ABC transp 100.0 2.2E-45 4.8E-50 358.1 -9.1 214 64-300 5-226 (306)
38 PRK15079 oligopeptide ABC tran 100.0 4.8E-45 1E-49 359.1 -8.6 226 63-301 5-251 (331)
39 PRK11000 maltose/maltodextrin 100.0 3.5E-45 7.7E-50 365.1 -10.7 214 66-302 3-224 (369)
40 cd03261 ABC_Org_Solvent_Resist 100.0 6.7E-45 1.5E-49 341.2 -8.8 206 67-290 1-212 (235)
41 COG1131 CcmA ABC-type multidru 100.0 1.6E-44 3.5E-49 349.8 -6.7 211 66-298 4-223 (293)
42 COG1123 ATPase components of v 100.0 3.4E-44 7.3E-49 365.2 -5.1 226 63-302 277-520 (539)
43 PRK11308 dppF dipeptide transp 100.0 1.1E-44 2.4E-49 356.1 -8.6 225 64-301 3-244 (327)
44 PRK09536 btuD corrinoid ABC tr 100.0 5.2E-45 1.1E-49 366.4 -11.2 224 65-310 2-238 (402)
45 PRK11022 dppD dipeptide transp 100.0 1.2E-44 2.6E-49 355.8 -8.7 224 66-301 3-243 (326)
46 PRK11153 metN DL-methionine tr 100.0 1.1E-44 2.3E-49 358.4 -9.0 219 66-300 1-229 (343)
47 cd03219 ABC_Mj1267_LivG_branch 100.0 1.9E-44 4.1E-49 338.0 -8.2 203 67-290 1-218 (236)
48 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.8E-44 6.1E-49 332.9 -7.3 208 67-290 1-215 (218)
49 cd03259 ABC_Carb_Solutes_like 100.0 1.8E-44 3.9E-49 333.2 -8.6 201 67-290 1-206 (213)
50 PRK09473 oppD oligopeptide tra 100.0 2.1E-44 4.6E-49 354.5 -8.7 227 63-301 9-251 (330)
51 PRK13536 nodulation factor exp 100.0 1.8E-44 4E-49 356.1 -9.7 214 64-300 39-260 (340)
52 TIGR02673 FtsE cell division A 100.0 3.6E-44 7.7E-49 331.3 -7.4 207 66-290 1-212 (214)
53 PRK11174 cysteine/glutathione 100.0 1.8E-44 3.8E-49 380.1 -11.1 247 24-299 299-570 (588)
54 cd03265 ABC_DrrA DrrA is the A 100.0 4.2E-44 9.1E-49 332.6 -8.3 202 67-290 1-207 (220)
55 cd03266 ABC_NatA_sodium_export 100.0 2.9E-44 6.2E-49 332.9 -9.4 206 66-290 1-211 (218)
56 COG1132 MdlB ABC-type multidru 100.0 2.9E-44 6.3E-49 377.1 -10.9 249 23-300 279-551 (567)
57 COG4525 TauB ABC-type taurine 100.0 2.9E-43 6.2E-48 313.9 -3.0 201 66-290 3-208 (259)
58 cd03258 ABC_MetN_methionine_tr 100.0 5.5E-44 1.2E-48 334.4 -8.1 209 66-290 1-216 (233)
59 COG1123 ATPase components of v 100.0 7.5E-44 1.6E-48 362.7 -7.9 227 65-303 4-246 (539)
60 TIGR01288 nodI ATP-binding ABC 100.0 4.4E-44 9.5E-49 348.4 -9.2 213 65-300 3-223 (303)
61 PRK13643 cbiO cobalt transport 100.0 6.5E-44 1.4E-48 344.9 -8.6 223 66-301 1-233 (288)
62 cd03218 ABC_YhbG The ABC trans 100.0 5.7E-44 1.2E-48 333.9 -9.1 203 67-290 1-208 (232)
63 COG1137 YhbG ABC-type (unclass 100.0 2.9E-44 6.3E-49 321.3 -10.7 222 65-307 3-234 (243)
64 cd03296 ABC_CysA_sulfate_impor 100.0 5.1E-44 1.1E-48 336.2 -9.9 202 66-290 2-212 (239)
65 TIGR02315 ABC_phnC phosphonate 100.0 1.2E-43 2.7E-48 333.8 -7.8 208 66-290 1-221 (243)
66 cd03301 ABC_MalK_N The N-termi 100.0 8.9E-44 1.9E-48 328.4 -8.7 201 67-290 1-206 (213)
67 PRK15093 antimicrobial peptide 100.0 1.3E-43 2.8E-48 349.0 -8.2 224 66-301 3-248 (330)
68 cd03292 ABC_FtsE_transporter F 100.0 1.3E-43 2.8E-48 327.4 -7.7 206 67-290 1-211 (214)
69 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.6E-44 1.4E-48 382.1 -11.2 246 23-299 402-671 (686)
70 PRK11629 lolD lipoprotein tran 100.0 1.7E-43 3.6E-48 331.5 -7.2 210 65-290 4-220 (233)
71 cd03225 ABC_cobalt_CbiO_domain 100.0 1.6E-43 3.5E-48 326.3 -7.3 203 68-290 1-209 (211)
72 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-43 2.7E-48 329.2 -8.2 202 67-290 1-207 (222)
73 TIGR03415 ABC_choXWV_ATP choli 100.0 2.3E-43 5.1E-48 352.1 -6.8 221 69-302 27-255 (382)
74 KOG0055 Multidrug/pheromone ex 100.0 3.8E-43 8.3E-48 380.4 -5.8 264 12-302 284-577 (1228)
75 cd03263 ABC_subfamily_A The AB 100.0 1.2E-43 2.7E-48 329.0 -8.5 202 67-290 1-207 (220)
76 cd03260 ABC_PstB_phosphate_tra 100.0 1.5E-43 3.3E-48 330.1 -8.0 202 67-290 1-215 (227)
77 PRK10908 cell division protein 100.0 1.8E-43 3.8E-48 328.8 -7.8 207 66-290 1-212 (222)
78 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.5E-43 3.3E-48 328.8 -8.4 199 67-289 1-206 (220)
79 PRK13634 cbiO cobalt transport 100.0 1.4E-43 3.1E-48 342.9 -9.1 224 67-302 3-236 (290)
80 PRK10070 glycine betaine trans 100.0 3.6E-43 7.9E-48 352.8 -6.6 220 65-301 27-254 (400)
81 cd03256 ABC_PhnC_transporter A 100.0 2.8E-43 6.1E-48 330.8 -7.2 207 67-290 1-220 (241)
82 PRK13637 cbiO cobalt transport 100.0 1.6E-43 3.5E-48 342.0 -9.2 220 67-301 3-234 (287)
83 PRK11831 putative ABC transpor 100.0 2E-43 4.2E-48 338.3 -8.7 209 64-290 5-219 (269)
84 COG4161 ArtP ABC-type arginine 100.0 1.3E-42 2.9E-47 301.5 -2.7 208 66-290 2-216 (242)
85 TIGR02211 LolD_lipo_ex lipopro 100.0 3.6E-43 7.8E-48 326.2 -6.8 208 67-290 2-216 (221)
86 TIGR02868 CydC thiol reductant 100.0 2E-43 4.4E-48 367.7 -9.5 222 24-272 282-528 (529)
87 cd03226 ABC_cobalt_CbiO_domain 100.0 3E-43 6.4E-48 323.5 -7.4 196 68-290 1-201 (205)
88 cd03268 ABC_BcrA_bacitracin_re 100.0 2.2E-43 4.7E-48 324.9 -8.5 197 67-290 1-201 (208)
89 PRK13650 cbiO cobalt transport 100.0 1.3E-43 2.7E-48 341.4 -10.6 217 66-302 4-230 (279)
90 PRK13651 cobalt transporter AT 100.0 2.5E-43 5.4E-48 343.4 -8.6 228 67-302 3-255 (305)
91 cd03262 ABC_HisP_GlnQ_permease 100.0 3.9E-43 8.6E-48 323.9 -7.0 204 67-290 1-210 (213)
92 PRK11264 putative amino-acid A 100.0 3.9E-43 8.5E-48 331.9 -7.2 211 66-290 3-219 (250)
93 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.4E-43 2.9E-48 381.0 -11.9 249 22-300 419-699 (710)
94 TIGR01188 drrA daunorubicin re 100.0 4.5E-43 9.8E-48 341.2 -7.1 196 87-299 8-211 (302)
95 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.7E-43 1.2E-47 335.1 -6.3 206 68-290 26-236 (269)
96 COG0410 LivF ABC-type branched 100.0 3E-43 6.6E-48 322.0 -8.6 219 65-303 2-228 (237)
97 PRK13631 cbiO cobalt transport 100.0 2.5E-43 5.3E-48 345.6 -9.9 233 63-303 18-267 (320)
98 PRK09493 glnQ glutamine ABC tr 100.0 3.8E-43 8.2E-48 330.3 -8.3 205 66-290 1-211 (240)
99 TIGR03522 GldA_ABC_ATP gliding 100.0 3E-43 6.6E-48 342.3 -9.3 209 67-299 3-219 (301)
100 PRK13647 cbiO cobalt transport 100.0 3E-43 6.5E-48 338.0 -9.3 205 65-290 3-213 (274)
101 PRK10584 putative ABC transpor 100.0 7E-43 1.5E-47 325.9 -6.8 213 64-290 4-221 (228)
102 PRK10619 histidine/lysine/argi 100.0 4.8E-43 1E-47 333.1 -8.1 215 64-290 3-227 (257)
103 PRK13646 cbiO cobalt transport 100.0 3.8E-43 8.2E-48 339.3 -9.1 223 67-301 3-235 (286)
104 PRK11248 tauB taurine transpor 100.0 4.1E-43 8.9E-48 333.7 -9.0 198 66-289 1-203 (255)
105 cd03264 ABC_drug_resistance_li 100.0 4.5E-43 9.8E-48 323.5 -8.7 199 67-290 1-204 (211)
106 cd03235 ABC_Metallic_Cations A 100.0 5.7E-43 1.2E-47 323.2 -8.1 196 68-290 1-207 (213)
107 TIGR03375 type_I_sec_LssB type 100.0 2.5E-43 5.4E-48 378.1 -12.3 240 23-290 412-674 (694)
108 cd03269 ABC_putative_ATPase Th 100.0 3.7E-43 8E-48 323.8 -9.6 198 67-290 1-203 (210)
109 PRK11176 lipid transporter ATP 100.0 4E-43 8.7E-48 369.3 -10.9 241 23-290 292-553 (582)
110 KOG0057 Mitochondrial Fe/S clu 100.0 1.3E-42 2.8E-47 348.6 -7.2 239 23-290 302-560 (591)
111 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 6.4E-43 1.4E-47 328.1 -9.2 202 66-290 1-207 (236)
112 TIGR01193 bacteriocin_ABC ABC- 100.0 4.4E-43 9.5E-48 377.0 -11.8 240 23-290 422-683 (708)
113 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1E-42 2.2E-47 327.9 -8.6 205 67-290 1-211 (242)
114 COG4988 CydD ABC-type transpor 100.0 2.2E-42 4.9E-47 351.0 -6.9 248 25-300 270-542 (559)
115 PRK11247 ssuB aliphatic sulfon 100.0 9.6E-43 2.1E-47 331.6 -9.1 196 64-290 10-209 (257)
116 TIGR00972 3a0107s01c2 phosphat 100.0 1.1E-42 2.3E-47 328.7 -8.7 203 66-290 1-218 (247)
117 PRK11300 livG leucine/isoleuci 100.0 1.1E-42 2.3E-47 329.9 -8.8 206 65-290 4-229 (255)
118 PRK10895 lipopolysaccharide AB 100.0 6.9E-43 1.5E-47 328.7 -10.1 204 66-290 3-212 (241)
119 cd03257 ABC_NikE_OppD_transpor 100.0 2.2E-42 4.7E-47 322.0 -6.7 210 66-290 1-221 (228)
120 PRK11144 modC molybdate transp 100.0 1.1E-42 2.5E-47 345.1 -9.2 214 66-304 1-221 (352)
121 TIGR02769 nickel_nikE nickel i 100.0 2.2E-42 4.7E-47 330.3 -7.1 220 66-300 2-239 (265)
122 PRK13638 cbiO cobalt transport 100.0 9.6E-43 2.1E-47 333.7 -9.8 216 66-301 1-225 (271)
123 PRK13644 cbiO cobalt transport 100.0 9.1E-43 2E-47 334.6 -10.1 217 66-303 1-226 (274)
124 PRK11160 cysteine/glutathione 100.0 1.1E-42 2.5E-47 365.6 -10.4 237 26-290 291-548 (574)
125 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.3E-42 2.8E-47 320.5 -8.9 199 67-290 1-204 (211)
126 PRK11614 livF leucine/isoleuci 100.0 5.2E-43 1.1E-47 328.8 -11.7 214 65-300 4-225 (237)
127 KOG0055 Multidrug/pheromone ex 100.0 4.2E-42 9E-47 372.3 -6.4 247 27-300 939-1212(1228)
128 PRK10790 putative multidrug tr 100.0 9E-43 1.9E-47 367.5 -11.5 248 23-300 292-562 (592)
129 PRK13641 cbiO cobalt transport 100.0 1.7E-42 3.7E-47 334.8 -8.6 219 66-301 2-234 (287)
130 TIGR00958 3a01208 Conjugate Tr 100.0 1.4E-42 3E-47 373.1 -10.4 248 23-300 428-701 (711)
131 PRK13635 cbiO cobalt transport 100.0 1E-42 2.2E-47 335.2 -10.3 216 65-300 4-228 (279)
132 TIGR03005 ectoine_ehuA ectoine 100.0 2E-42 4.4E-47 327.8 -8.1 212 67-290 1-222 (252)
133 PRK13636 cbiO cobalt transport 100.0 1.6E-42 3.5E-47 334.4 -9.0 219 65-301 4-231 (283)
134 PRK14273 phosphate ABC transpo 100.0 2.5E-42 5.5E-47 327.5 -7.5 216 63-300 4-237 (254)
135 TIGR03411 urea_trans_UrtD urea 100.0 1.6E-42 3.4E-47 326.3 -8.9 203 66-290 2-217 (242)
136 PRK14250 phosphate ABC transpo 100.0 1.1E-42 2.4E-47 327.8 -10.0 201 66-290 3-207 (241)
137 TIGR03410 urea_trans_UrtE urea 100.0 2.3E-42 5.1E-47 322.8 -7.9 202 67-290 1-207 (230)
138 PRK10575 iron-hydroxamate tran 100.0 1.4E-42 3E-47 331.6 -9.8 206 64-290 9-223 (265)
139 TIGR03608 L_ocin_972_ABC putat 100.0 4.3E-42 9.4E-47 315.4 -6.2 201 69-288 1-206 (206)
140 PRK13548 hmuV hemin importer A 100.0 1.6E-42 3.5E-47 330.0 -9.4 204 66-290 2-216 (258)
141 PRK11124 artP arginine transpo 100.0 2.8E-42 6.1E-47 324.8 -7.8 209 66-290 2-216 (242)
142 PRK10253 iron-enterobactin tra 100.0 1.6E-42 3.4E-47 331.2 -10.0 207 63-290 4-219 (265)
143 TIGR01978 sufC FeS assembly AT 100.0 3.9E-42 8.4E-47 323.5 -7.3 204 67-290 1-220 (243)
144 COG4148 ModC ABC-type molybdat 100.0 3.4E-41 7.4E-46 314.7 -0.9 200 90-305 16-222 (352)
145 PRK14247 phosphate ABC transpo 100.0 3.8E-42 8.3E-47 325.4 -7.8 203 66-290 3-220 (250)
146 PRK13538 cytochrome c biogenes 100.0 3.7E-42 8.1E-47 316.2 -7.7 198 66-288 1-202 (204)
147 COG4987 CydC ABC-type transpor 100.0 4.3E-42 9.3E-47 344.6 -8.0 251 23-300 286-560 (573)
148 PRK10247 putative ABC transpor 100.0 8.6E-42 1.9E-46 318.5 -5.7 205 63-290 4-212 (225)
149 PRK11231 fecE iron-dicitrate t 100.0 2.3E-42 5E-47 328.1 -9.8 203 66-290 2-213 (255)
150 PRK13652 cbiO cobalt transport 100.0 3.4E-42 7.4E-47 331.1 -9.1 215 66-301 3-227 (277)
151 KOG0056 Heavy metal exporter H 100.0 4.1E-42 8.9E-47 339.7 -8.7 246 27-300 490-760 (790)
152 PRK13640 cbiO cobalt transport 100.0 2.5E-42 5.5E-47 332.9 -10.1 218 64-301 3-232 (282)
153 COG4559 ABC-type hemin transpo 100.0 7.7E-42 1.7E-46 308.3 -6.3 227 66-314 1-244 (259)
154 PRK13632 cbiO cobalt transport 100.0 3.4E-42 7.4E-47 330.0 -9.1 218 63-300 4-230 (271)
155 PRK15112 antimicrobial peptide 100.0 5.6E-42 1.2E-46 327.9 -8.3 209 64-290 2-225 (267)
156 TIGR02324 CP_lyasePhnL phospho 100.0 1.2E-41 2.7E-46 316.6 -5.7 208 66-288 1-222 (224)
157 PRK14267 phosphate ABC transpo 100.0 4.2E-42 9.1E-47 325.6 -9.0 206 65-290 3-223 (253)
158 COG4172 ABC-type uncharacteriz 100.0 5.5E-41 1.2E-45 326.3 -1.6 229 63-303 3-249 (534)
159 PRK13543 cytochrome c biogenes 100.0 1.1E-41 2.5E-46 315.4 -6.1 201 62-289 7-211 (214)
160 PRK14242 phosphate transporter 100.0 7.2E-42 1.6E-46 324.0 -7.6 207 63-290 3-223 (253)
161 PRK13639 cbiO cobalt transport 100.0 5.3E-42 1.1E-46 329.5 -8.7 216 66-301 1-226 (275)
162 PRK14268 phosphate ABC transpo 100.0 5.2E-42 1.1E-46 326.3 -8.8 217 63-300 9-241 (258)
163 TIGR02857 CydD thiol reductant 100.0 5.8E-42 1.2E-46 356.8 -9.4 238 24-288 272-529 (529)
164 TIGR01277 thiQ thiamine ABC tr 100.0 8.9E-42 1.9E-46 315.6 -7.3 198 68-290 2-204 (213)
165 TIGR02203 MsbA_lipidA lipid A 100.0 3.3E-42 7.2E-47 361.3 -11.5 241 23-290 281-542 (571)
166 TIGR02142 modC_ABC molybdenum 100.0 9.6E-42 2.1E-46 338.8 -8.0 211 71-301 4-221 (354)
167 PRK09984 phosphonate/organopho 100.0 8.7E-42 1.9E-46 325.4 -8.0 210 65-290 3-228 (262)
168 PRK13648 cbiO cobalt transport 100.0 7.8E-42 1.7E-46 327.1 -8.5 218 64-301 5-231 (269)
169 PRK10744 pstB phosphate transp 100.0 7.9E-42 1.7E-46 325.4 -8.6 208 62-290 9-230 (260)
170 COG4172 ABC-type uncharacteriz 100.0 2.4E-41 5.2E-46 328.8 -5.4 228 64-302 274-517 (534)
171 PRK11701 phnK phosphonate C-P 100.0 1.1E-41 2.3E-46 324.0 -7.9 220 65-300 5-240 (258)
172 PRK10261 glutathione transport 100.0 1.6E-41 3.5E-46 359.8 -7.6 232 63-300 9-257 (623)
173 PRK13649 cbiO cobalt transport 100.0 8.7E-42 1.9E-46 328.5 -8.7 222 67-301 3-234 (280)
174 PRK10261 glutathione transport 100.0 9.9E-42 2.2E-46 361.4 -9.2 223 64-301 311-553 (623)
175 PRK10771 thiQ thiamine transpo 100.0 4.8E-42 1E-46 321.4 -10.4 200 66-290 1-205 (232)
176 TIGR01846 type_I_sec_HlyB type 100.0 6.2E-42 1.3E-46 367.3 -11.3 241 23-290 405-666 (694)
177 PRK13642 cbiO cobalt transport 100.0 8.3E-42 1.8E-46 328.4 -9.6 217 66-301 4-229 (277)
178 PRK14269 phosphate ABC transpo 100.0 1.1E-41 2.3E-46 321.9 -8.7 202 66-290 2-216 (246)
179 TIGR03873 F420-0_ABC_ATP propo 100.0 1.3E-41 2.7E-46 323.2 -8.5 202 67-290 2-212 (256)
180 PRK13633 cobalt transporter AT 100.0 1.3E-41 2.8E-46 327.6 -8.7 222 64-301 2-233 (280)
181 PRK10762 D-ribose transporter 100.0 1.6E-41 3.5E-46 351.5 -8.9 205 65-290 3-216 (501)
182 cd03231 ABC_CcmA_heme_exporter 100.0 3.1E-41 6.8E-46 309.5 -6.3 194 67-288 1-198 (201)
183 PRK14256 phosphate ABC transpo 100.0 2E-41 4.2E-46 321.0 -8.1 217 64-300 2-235 (252)
184 PRK14235 phosphate transporter 100.0 2.1E-41 4.6E-46 323.8 -7.9 209 61-290 14-237 (267)
185 PTZ00265 multidrug resistance 100.0 2.3E-41 4.9E-46 384.8 -9.2 238 27-290 1114-1433(1466)
186 TIGR02323 CP_lyasePhnK phospho 100.0 2.3E-41 5.1E-46 320.5 -7.7 210 65-290 2-224 (253)
187 PRK13549 xylose transporter AT 100.0 2.3E-41 5E-46 350.7 -8.4 205 65-290 4-218 (506)
188 PRK09700 D-allose transporter 100.0 1.9E-41 4.1E-46 351.7 -9.2 205 65-290 4-220 (510)
189 COG4618 ArpD ABC-type protease 100.0 4.2E-41 9.1E-46 335.1 -7.2 250 24-300 287-559 (580)
190 PRK14259 phosphate ABC transpo 100.0 3.9E-41 8.5E-46 322.4 -7.2 208 62-290 9-228 (269)
191 PRK13540 cytochrome c biogenes 100.0 4.4E-41 9.6E-46 308.2 -6.6 193 66-285 1-197 (200)
192 PRK14241 phosphate transporter 100.0 2.6E-41 5.7E-46 321.4 -8.4 204 66-289 4-221 (258)
193 PRK14274 phosphate ABC transpo 100.0 3.2E-41 6.9E-46 321.0 -7.9 217 63-300 9-242 (259)
194 TIGR03740 galliderm_ABC gallid 100.0 3.2E-41 6.9E-46 313.9 -7.9 195 67-290 1-199 (223)
195 cd03297 ABC_ModC_molybdenum_tr 100.0 4.3E-41 9.4E-46 311.1 -7.0 199 71-290 5-207 (214)
196 PRK13547 hmuV hemin importer A 100.0 1.2E-41 2.7E-46 326.6 -11.2 204 66-290 1-230 (272)
197 PRK13645 cbiO cobalt transport 100.0 2.2E-41 4.9E-46 327.2 -9.5 226 65-301 5-240 (289)
198 PRK15439 autoinducer 2 ABC tra 100.0 3.2E-41 6.9E-46 350.0 -9.1 203 64-290 9-215 (510)
199 PRK14239 phosphate transporter 100.0 3.2E-41 7E-46 319.2 -8.3 215 65-300 4-235 (252)
200 PLN03232 ABC transporter C fam 100.0 1.4E-41 2.9E-46 388.8 -13.0 248 24-300 1181-1457(1495)
201 PRK14245 phosphate ABC transpo 100.0 3.2E-41 6.8E-46 319.3 -8.5 215 65-300 2-233 (250)
202 PRK15134 microcin C ABC transp 100.0 8.2E-41 1.8E-45 348.4 -6.7 223 63-300 272-514 (529)
203 PRK13657 cyclic beta-1,2-gluca 100.0 1.8E-41 3.8E-46 357.4 -11.8 239 24-290 284-544 (588)
204 PRK14248 phosphate ABC transpo 100.0 4.2E-41 9.1E-46 321.8 -8.3 208 62-290 17-238 (268)
205 PRK14257 phosphate ABC transpo 100.0 3.5E-41 7.7E-46 331.4 -9.3 219 63-303 77-315 (329)
206 TIGR01842 type_I_sec_PrtD type 100.0 2.4E-41 5.2E-46 353.5 -11.2 241 23-290 268-528 (544)
207 TIGR02982 heterocyst_DevA ABC 100.0 4.1E-41 8.8E-46 312.7 -8.5 206 67-290 2-216 (220)
208 PRK10789 putative multidrug tr 100.0 2.6E-41 5.6E-46 355.0 -11.2 250 23-299 264-536 (569)
209 COG4152 ABC-type uncharacteriz 100.0 1.2E-40 2.7E-45 306.0 -5.3 205 66-296 2-214 (300)
210 PRK14270 phosphate ABC transpo 100.0 5.2E-41 1.1E-45 318.0 -8.2 216 64-300 2-234 (251)
211 cd03300 ABC_PotA_N PotA is an 100.0 6.4E-41 1.4E-45 313.9 -7.7 201 67-290 1-206 (232)
212 PRK14240 phosphate transporter 100.0 5.3E-41 1.2E-45 317.6 -8.3 204 66-290 3-220 (250)
213 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.8E-41 1E-45 322.8 -9.2 207 66-301 2-225 (275)
214 PRK14251 phosphate ABC transpo 100.0 6E-41 1.3E-45 317.4 -8.5 205 65-290 3-221 (251)
215 PLN03130 ABC transporter C fam 100.0 3.9E-41 8.5E-46 386.0 -11.9 251 22-301 1182-1461(1622)
216 PRK14237 phosphate transporter 100.0 7.5E-41 1.6E-45 320.1 -8.2 220 60-300 14-250 (267)
217 cd03267 ABC_NatA_like Similar 100.0 1.6E-40 3.5E-45 312.2 -6.3 188 87-290 36-229 (236)
218 PRK03695 vitamin B12-transport 100.0 7E-41 1.5E-45 317.0 -8.8 197 68-290 2-208 (248)
219 PRK14243 phosphate transporter 100.0 1E-40 2.3E-45 318.6 -7.8 205 64-289 8-224 (264)
220 PRK14255 phosphate ABC transpo 100.0 1.2E-40 2.7E-45 315.4 -7.4 215 64-300 3-235 (252)
221 TIGR02204 MsbA_rel ABC transpo 100.0 7.2E-41 1.6E-45 351.7 -10.6 241 23-290 285-549 (576)
222 PRK14262 phosphate ABC transpo 100.0 1E-40 2.2E-45 315.7 -8.6 204 66-290 3-220 (250)
223 PRK14272 phosphate ABC transpo 100.0 1.3E-40 2.7E-45 315.2 -7.9 214 66-300 4-235 (252)
224 PRK09544 znuC high-affinity zi 100.0 5.5E-41 1.2E-45 318.5 -10.4 199 65-301 3-209 (251)
225 PRK14249 phosphate ABC transpo 100.0 1E-40 2.3E-45 315.9 -8.5 216 64-300 2-234 (251)
226 PRK14265 phosphate ABC transpo 100.0 1.2E-40 2.6E-45 319.9 -8.2 206 62-289 16-234 (274)
227 PRK14238 phosphate transporter 100.0 1.2E-40 2.6E-45 319.3 -8.5 216 63-300 21-254 (271)
228 PRK10419 nikE nickel transport 100.0 1.7E-40 3.7E-45 317.8 -7.5 220 66-300 3-240 (268)
229 TIGR00968 3a0106s01 sulfate AB 100.0 6.8E-41 1.5E-45 314.8 -10.2 201 67-290 1-206 (237)
230 PRK13539 cytochrome c biogenes 100.0 1.7E-40 3.6E-45 306.1 -7.4 194 66-289 2-199 (207)
231 cd03299 ABC_ModC_like Archeal 100.0 1.1E-40 2.4E-45 313.1 -9.0 200 67-290 1-205 (235)
232 COG4619 ABC-type uncharacteriz 100.0 9.5E-40 2.1E-44 285.1 -2.5 203 66-290 3-209 (223)
233 PRK14260 phosphate ABC transpo 100.0 1.5E-40 3.3E-45 316.4 -8.3 204 65-289 6-223 (259)
234 PRK15134 microcin C ABC transp 100.0 2.4E-40 5.2E-45 344.8 -7.7 213 64-290 3-232 (529)
235 PRK11288 araG L-arabinose tran 100.0 1.8E-40 3.9E-45 343.7 -8.7 205 65-290 3-215 (501)
236 cd03245 ABCC_bacteriocin_expor 100.0 1.7E-40 3.8E-45 307.9 -8.2 196 67-290 3-213 (220)
237 PRK14253 phosphate ABC transpo 100.0 2.1E-40 4.5E-45 313.3 -8.0 203 66-290 3-219 (249)
238 COG4608 AppF ABC-type oligopep 100.0 3.5E-40 7.7E-45 309.5 -6.4 187 65-303 3-201 (268)
239 TIGR01189 ccmA heme ABC export 100.0 2.7E-40 5.9E-45 302.3 -7.1 184 67-274 1-188 (198)
240 TIGR02633 xylG D-xylose ABC tr 100.0 2.2E-40 4.7E-45 342.9 -8.8 205 66-290 1-216 (500)
241 PRK14254 phosphate ABC transpo 100.0 2E-40 4.2E-45 320.2 -8.6 206 63-290 36-255 (285)
242 cd03252 ABCC_Hemolysin The ABC 100.0 1.5E-40 3.2E-45 312.0 -9.5 201 67-290 1-211 (237)
243 TIGR00957 MRP_assoc_pro multi 100.0 1.5E-40 3.3E-45 380.7 -11.5 250 23-300 1230-1507(1522)
244 TIGR03269 met_CoM_red_A2 methy 100.0 5.5E-40 1.2E-44 341.5 -6.3 212 67-290 1-244 (520)
245 PRK14275 phosphate ABC transpo 100.0 1.6E-40 3.6E-45 320.9 -9.6 206 63-290 36-256 (286)
246 PRK14258 phosphate ABC transpo 100.0 2E-40 4.4E-45 316.0 -8.9 207 65-290 6-226 (261)
247 PRK14261 phosphate ABC transpo 100.0 2E-40 4.4E-45 314.2 -8.9 216 64-300 4-236 (253)
248 PRK10418 nikD nickel transport 100.0 2.6E-40 5.6E-45 313.9 -8.3 201 66-290 4-216 (254)
249 PRK14244 phosphate ABC transpo 100.0 2.8E-40 6.1E-45 312.9 -8.2 202 68-290 7-223 (251)
250 cd03234 ABCG_White The White s 100.0 7.9E-40 1.7E-44 305.2 -5.0 203 66-290 3-219 (226)
251 TIGR01184 ntrCD nitrate transp 100.0 8.2E-40 1.8E-44 306.3 -5.0 183 88-290 1-190 (230)
252 PRK14236 phosphate transporter 100.0 2.9E-40 6.2E-45 316.8 -8.5 209 61-290 20-242 (272)
253 TIGR01166 cbiO cobalt transpor 100.0 1.2E-39 2.5E-44 296.2 -4.1 176 87-275 7-189 (190)
254 CHL00131 ycf16 sulfate ABC tra 100.0 4.4E-40 9.5E-45 311.5 -7.6 207 64-290 5-227 (252)
255 PRK14271 phosphate ABC transpo 100.0 3.6E-40 7.8E-45 317.0 -8.9 216 63-300 18-250 (276)
256 PRK10982 galactose/methyl gala 100.0 4.8E-40 1E-44 339.6 -8.6 201 69-290 1-209 (491)
257 TIGR03269 met_CoM_red_A2 methy 100.0 6E-40 1.3E-44 341.2 -8.1 215 63-290 276-503 (520)
258 cd03251 ABCC_MsbA MsbA is an e 100.0 3E-40 6.5E-45 309.1 -9.6 201 67-290 1-211 (234)
259 TIGR01192 chvA glucan exporter 100.0 2.8E-40 6E-45 348.2 -11.1 238 24-290 284-544 (585)
260 cd03248 ABCC_TAP TAP, the Tran 100.0 3E-40 6.6E-45 307.7 -9.8 206 63-290 8-223 (226)
261 PRK15056 manganese/iron transp 100.0 3E-40 6.5E-45 316.7 -10.4 212 65-300 5-229 (272)
262 PRK14246 phosphate ABC transpo 100.0 6.6E-40 1.4E-44 312.0 -8.0 222 63-300 7-240 (257)
263 PRK13549 xylose transporter AT 100.0 1.4E-39 3.1E-44 337.3 -6.3 209 64-290 257-480 (506)
264 cd03230 ABC_DR_subfamily_A Thi 100.0 8.6E-40 1.9E-44 293.2 -7.0 166 67-290 1-170 (173)
265 PRK09580 sufC cysteine desulfu 100.0 1.6E-39 3.4E-44 306.8 -6.6 205 66-290 1-221 (248)
266 cd03244 ABCC_MRP_domain2 Domai 100.0 6.7E-40 1.5E-44 304.2 -9.0 197 66-290 2-212 (221)
267 PTZ00243 ABC transporter; Prov 100.0 5.8E-40 1.3E-44 375.7 -11.6 249 23-300 1227-1532(1560)
268 cd03254 ABCC_Glucan_exporter_l 100.0 6.9E-40 1.5E-44 305.7 -9.1 196 66-290 2-212 (229)
269 TIGR01194 cyc_pep_trnsptr cycl 100.0 5.8E-40 1.3E-44 343.8 -10.8 239 23-290 278-545 (555)
270 PRK09700 D-allose transporter 100.0 1.6E-39 3.5E-44 337.2 -7.9 204 64-290 263-484 (510)
271 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.5E-39 3.2E-44 305.3 -8.0 197 67-290 1-212 (238)
272 PRK14266 phosphate ABC transpo 100.0 1.4E-39 3E-44 307.9 -8.5 214 66-300 3-233 (250)
273 cd03246 ABCC_Protease_Secretio 100.0 2E-39 4.4E-44 290.8 -7.1 166 67-290 1-170 (173)
274 TIGR02770 nickel_nikD nickel i 100.0 2.2E-39 4.8E-44 303.1 -7.4 188 87-290 1-201 (230)
275 PRK10938 putative molybdenum t 100.0 1.1E-39 2.3E-44 336.9 -10.6 196 66-290 3-210 (490)
276 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.9E-39 6.3E-44 297.4 -6.8 191 64-290 4-198 (207)
277 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.4E-39 7.4E-44 301.0 -6.5 190 67-290 23-217 (224)
278 PRK14263 phosphate ABC transpo 100.0 2.3E-39 4.9E-44 309.0 -8.2 205 64-289 6-222 (261)
279 cd03229 ABC_Class3 This class 100.0 2E-39 4.3E-44 292.1 -8.5 172 67-290 1-176 (178)
280 cd03215 ABC_Carb_Monos_II This 100.0 6.3E-39 1.4E-43 289.9 -5.3 170 65-290 3-179 (182)
281 TIGR02633 xylG D-xylose ABC tr 100.0 4.9E-39 1.1E-43 332.8 -7.3 209 64-290 255-478 (500)
282 TIGR01271 CFTR_protein cystic 100.0 2E-39 4.4E-44 370.6 -11.4 248 24-300 1150-1439(1490)
283 cd03213 ABCG_EPDR ABCG transpo 100.0 9.4E-39 2E-43 291.8 -5.2 175 66-290 3-187 (194)
284 COG1129 MglA ABC-type sugar tr 100.0 1.2E-38 2.6E-43 322.7 -5.6 207 63-290 5-220 (500)
285 PRK14264 phosphate ABC transpo 100.0 4.7E-39 1E-43 313.5 -8.5 215 64-300 43-288 (305)
286 PRK10522 multidrug transporter 100.0 2.5E-39 5.4E-44 338.5 -11.2 236 25-290 275-524 (547)
287 PRK14252 phosphate ABC transpo 100.0 6.7E-39 1.4E-43 306.1 -7.9 209 62-290 12-235 (265)
288 cd03253 ABCC_ATM1_transporter 100.0 5.5E-39 1.2E-43 300.9 -8.3 195 67-290 1-210 (236)
289 PRK13541 cytochrome c biogenes 100.0 9.8E-39 2.1E-43 291.5 -6.6 184 66-280 1-188 (195)
290 cd03233 ABC_PDR_domain1 The pl 100.0 2.7E-38 5.8E-43 290.5 -4.4 184 66-290 3-195 (202)
291 COG4167 SapF ABC-type antimicr 100.0 4.8E-38 1E-42 278.0 -3.5 224 65-302 3-240 (267)
292 cd03232 ABC_PDR_domain2 The pl 100.0 3E-38 6.6E-43 287.9 -5.1 174 66-290 3-184 (192)
293 PRK10762 D-ribose transporter 100.0 2.5E-38 5.4E-43 327.7 -6.4 200 65-290 256-470 (501)
294 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.8E-38 4E-43 291.1 -6.6 173 67-290 1-180 (200)
295 cd03214 ABC_Iron-Siderophores_ 100.0 6.7E-39 1.4E-43 289.2 -9.6 169 68-290 1-173 (180)
296 cd03250 ABCC_MRP_domain1 Domai 100.0 1.7E-38 3.6E-43 291.7 -7.2 183 67-290 1-202 (204)
297 TIGR01257 rim_protein retinal- 100.0 1.9E-38 4.1E-43 363.5 -8.6 215 63-298 1934-2156(2272)
298 cd03290 ABCC_SUR1_N The SUR do 100.0 2.3E-38 5E-43 293.7 -6.7 198 68-289 2-215 (218)
299 TIGR00954 3a01203 Peroxysomal 100.0 1.7E-38 3.8E-43 338.4 -8.9 230 24-290 378-653 (659)
300 cd03247 ABCC_cytochrome_bd The 100.0 3.2E-38 7E-43 284.1 -6.0 167 67-290 1-171 (178)
301 cd03228 ABCC_MRP_Like The MRP 100.0 2.5E-38 5.4E-43 283.2 -6.8 165 67-290 1-169 (171)
302 PRK15064 ABC transporter ATP-b 100.0 3.8E-38 8.3E-43 328.4 -6.5 190 66-290 1-227 (530)
303 PRK10535 macrolide transporter 100.0 9.8E-38 2.1E-42 332.2 -4.3 219 65-300 3-231 (648)
304 cd03223 ABCD_peroxisomal_ALDP 100.0 5.4E-38 1.2E-42 280.0 -5.3 158 67-290 1-162 (166)
305 PTZ00265 multidrug resistance 100.0 2.9E-38 6.2E-43 359.5 -9.3 241 31-290 340-654 (1466)
306 cd03288 ABCC_SUR2 The SUR doma 100.0 1.7E-38 3.6E-43 302.2 -10.1 199 63-290 16-229 (257)
307 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.6E-38 1.4E-42 296.6 -6.0 173 88-290 15-191 (246)
308 PRK15439 autoinducer 2 ABC tra 100.0 6.7E-38 1.4E-42 325.2 -6.8 201 64-290 266-478 (510)
309 TIGR01257 rim_protein retinal- 100.0 6E-38 1.3E-42 359.4 -7.9 205 64-290 926-1135(2272)
310 TIGR03771 anch_rpt_ABC anchore 100.0 5E-38 1.1E-42 292.9 -7.0 177 93-290 1-188 (223)
311 COG3845 ABC-type uncharacteriz 100.0 1.4E-37 3E-42 309.9 -4.9 205 65-290 3-215 (501)
312 PRK11819 putative ABC transpor 100.0 1.6E-37 3.4E-42 325.5 -5.0 191 64-290 4-235 (556)
313 PRK10982 galactose/methyl gala 100.0 1.1E-37 2.4E-42 322.1 -6.9 205 64-290 248-466 (491)
314 PRK11288 araG L-arabinose tran 100.0 1.5E-37 3.2E-42 321.9 -6.4 201 65-290 256-471 (501)
315 COG5265 ATM1 ABC-type transpor 100.0 9.1E-38 2E-42 305.3 -8.7 250 22-299 209-484 (497)
316 TIGR01187 potA spermidine/putr 100.0 1.2E-37 2.6E-42 306.1 -8.1 182 103-301 1-190 (325)
317 PRK10938 putative molybdenum t 100.0 1.4E-37 3.1E-42 321.1 -8.3 207 64-290 258-478 (490)
318 PRK15064 ABC transporter ATP-b 100.0 2.3E-37 5E-42 322.5 -7.4 186 65-290 318-510 (530)
319 PRK13409 putative ATPase RIL; 100.0 2.6E-37 5.6E-42 325.0 -7.2 188 64-290 338-529 (590)
320 PLN03211 ABC transporter G-25; 100.0 7.6E-37 1.7E-41 325.1 -4.7 198 69-290 71-282 (659)
321 PRK13546 teichoic acids export 100.0 1.9E-37 4.2E-42 296.3 -8.8 175 87-290 39-218 (264)
322 cd03216 ABC_Carb_Monos_I This 100.0 2.4E-37 5.2E-42 275.0 -7.7 153 67-290 1-157 (163)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-36 2.5E-41 318.7 -4.7 190 65-290 3-233 (552)
324 PRK11819 putative ABC transpor 100.0 5.4E-37 1.2E-41 321.5 -7.8 191 64-290 322-517 (556)
325 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.4E-37 1.2E-41 321.2 -7.9 191 64-290 320-515 (552)
326 PRK13545 tagH teichoic acids e 100.0 3.2E-37 6.9E-42 315.3 -9.6 205 64-300 19-231 (549)
327 COG1101 PhnK ABC-type uncharac 100.0 1.2E-36 2.6E-41 275.2 -5.0 209 66-290 1-224 (263)
328 COG4136 ABC-type uncharacteriz 100.0 8.9E-37 1.9E-41 262.2 -6.7 198 66-287 2-206 (213)
329 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.1E-36 4.7E-41 287.7 -5.9 194 70-290 4-214 (255)
330 COG4674 Uncharacterized ABC-ty 100.0 5.3E-36 1.2E-40 267.3 -5.7 221 65-307 4-241 (249)
331 PRK10636 putative ABC transpor 100.0 8.3E-36 1.8E-40 316.8 -8.0 187 64-290 310-502 (638)
332 PRK11147 ABC transporter ATPas 100.0 1.1E-35 2.4E-40 316.0 -7.6 190 64-289 317-511 (635)
333 COG4107 PhnK ABC-type phosphon 100.0 1.2E-34 2.7E-39 254.5 0.3 229 63-302 3-242 (258)
334 cd03291 ABCC_CFTR1 The CFTR su 100.0 8.2E-36 1.8E-40 287.5 -8.5 199 47-290 15-233 (282)
335 COG1119 ModF ABC-type molybden 100.0 1E-35 2.2E-40 274.7 -8.1 212 60-290 25-248 (257)
336 PRK15177 Vi polysaccharide exp 100.0 2.4E-35 5.3E-40 273.2 -5.7 172 87-290 2-178 (213)
337 PLN03130 ABC transporter C fam 100.0 1.2E-35 2.7E-40 340.8 -10.1 225 24-290 566-814 (1622)
338 PLN03232 ABC transporter C fam 100.0 1.6E-35 3.5E-40 338.9 -10.9 227 23-290 565-814 (1495)
339 PRK10636 putative ABC transpor 100.0 6E-35 1.3E-39 310.2 -6.0 205 66-290 1-221 (638)
340 TIGR00955 3a01204 The Eye Pigm 100.0 1.4E-34 3.1E-39 306.4 -4.1 195 87-299 40-254 (617)
341 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.3E-35 7.1E-40 256.3 -8.0 138 67-290 1-142 (144)
342 PLN03073 ABC transporter F fam 100.0 9.1E-35 2E-39 311.2 -6.5 190 64-290 506-699 (718)
343 TIGR00957 MRP_assoc_pro multi 100.0 4.2E-35 9E-40 336.0 -10.3 228 24-290 585-836 (1522)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 1.6E-34 3.5E-39 260.3 -6.6 140 70-290 4-147 (177)
345 KOG0054 Multidrug resistance-a 100.0 9.4E-35 2E-39 321.3 -10.0 248 25-301 1086-1362(1381)
346 PRK11147 ABC transporter ATPas 100.0 4.7E-34 1E-38 303.5 -6.4 199 66-290 3-228 (635)
347 PRK13409 putative ATPase RIL; 100.0 3.5E-34 7.5E-39 301.3 -7.6 190 71-290 78-286 (590)
348 COG1134 TagH ABC-type polysacc 100.0 7.7E-34 1.7E-38 262.3 -5.1 204 66-300 24-235 (249)
349 TIGR00956 3a01205 Pleiotropic 100.0 1.4E-33 3E-38 320.7 -5.5 202 66-290 759-978 (1394)
350 COG4778 PhnL ABC-type phosphon 100.0 5.4E-33 1.2E-37 243.3 -1.4 217 66-289 4-226 (235)
351 cd03238 ABC_UvrA The excision 100.0 1.8E-33 3.9E-38 253.3 -6.1 149 87-290 10-163 (176)
352 COG0396 sufC Cysteine desulfur 100.0 2.3E-33 4.9E-38 256.5 -5.9 212 66-296 3-229 (251)
353 COG4586 ABC-type uncharacteriz 100.0 4.3E-33 9.4E-38 259.8 -4.2 189 86-290 38-232 (325)
354 TIGR01271 CFTR_protein cystic 100.0 1.4E-33 2.9E-38 322.9 -10.3 226 27-290 349-622 (1490)
355 PLN03140 ABC transporter G fam 100.0 9E-33 2E-37 313.8 -6.1 206 66-289 867-1094(1470)
356 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4.4E-33 9.5E-38 245.5 -7.2 149 69-289 2-154 (157)
357 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-32 2.7E-37 313.0 -5.8 190 87-290 76-286 (1394)
358 PLN03140 ABC transporter G fam 100.0 5.8E-32 1.2E-36 307.3 -1.0 188 87-290 180-413 (1470)
359 COG0488 Uup ATPase components 100.0 3.3E-32 7.2E-37 281.1 -4.1 189 65-290 2-225 (530)
360 PLN03073 ABC transporter F fam 100.0 8.8E-33 1.9E-37 295.9 -8.7 211 65-290 176-416 (718)
361 COG4133 CcmA ABC-type transpor 100.0 2.4E-31 5.3E-36 236.4 -0.5 187 66-275 2-192 (209)
362 PTZ00243 ABC transporter; Prov 100.0 4E-32 8.8E-37 311.3 -9.3 166 87-290 675-856 (1560)
363 KOG0054 Multidrug resistance-a 100.0 2E-31 4.4E-36 294.9 -9.4 226 25-290 469-717 (1381)
364 cd03270 ABC_UvrA_I The excisio 100.0 5.8E-31 1.3E-35 246.1 -5.2 191 87-289 10-212 (226)
365 KOG0059 Lipid exporter ABCA1 a 100.0 1.3E-30 2.9E-35 285.5 -5.9 206 65-290 563-773 (885)
366 KOG0061 Transporter, ABC super 100.0 2.4E-30 5.2E-35 273.1 -4.1 206 66-290 25-246 (613)
367 COG0488 Uup ATPase components 99.9 4.8E-30 1E-34 265.1 -4.7 188 64-290 319-511 (530)
368 PF00005 ABC_tran: ABC transpo 99.9 7.7E-31 1.7E-35 225.1 -10.8 130 88-239 1-134 (137)
369 COG4138 BtuD ABC-type cobalami 99.9 2.6E-29 5.6E-34 221.1 -2.0 205 88-312 15-233 (248)
370 cd03278 ABC_SMC_barmotin Barmo 99.9 2.1E-29 4.5E-34 230.9 -4.2 161 88-290 12-190 (197)
371 COG4615 PvdE ABC-type sideroph 99.9 1.8E-29 4E-34 245.3 -6.8 235 25-290 275-523 (546)
372 cd03271 ABC_UvrA_II The excisi 99.9 4.7E-28 1E-32 230.7 -6.5 192 87-289 10-245 (261)
373 COG4170 SapD ABC-type antimicr 99.9 1.2E-26 2.5E-31 209.7 0.8 225 65-301 2-248 (330)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.9 5.1E-27 1.1E-31 220.8 -3.9 182 87-289 17-234 (243)
375 cd03279 ABC_sbcCD SbcCD and ot 99.9 9.6E-27 2.1E-31 215.5 -5.3 185 66-290 5-208 (213)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.6E-27 5.6E-32 219.4 -9.3 181 67-290 6-204 (212)
377 COG4178 ABC-type uncharacteriz 99.9 8.2E-27 1.8E-31 240.8 -6.6 188 64-288 390-586 (604)
378 KOG0927 Predicted transporter 99.9 4.6E-26 9.9E-31 229.0 -1.8 190 63-290 386-581 (614)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.1E-26 2.4E-31 220.2 -7.6 176 98-289 25-242 (251)
380 COG1129 MglA ABC-type sugar tr 99.9 3.5E-25 7.5E-30 224.8 -5.1 189 88-290 275-476 (500)
381 cd03240 ABC_Rad50 The catalyti 99.9 3.3E-25 7.1E-30 204.2 -6.2 161 92-290 17-197 (204)
382 KOG0065 Pleiotropic drug resis 99.9 1E-23 2.3E-28 229.8 1.0 186 87-290 806-1006(1391)
383 COG1245 Predicted ATPase, RNas 99.9 3.6E-24 7.8E-29 211.7 -2.5 166 93-290 362-531 (591)
384 KOG0060 Long-chain acyl-CoA tr 99.9 1E-23 2.2E-28 213.5 -4.0 236 23-290 361-641 (659)
385 PRK00349 uvrA excinuclease ABC 99.9 1.7E-23 3.8E-28 228.4 -4.3 90 193-288 810-905 (943)
386 PRK00635 excinuclease ABC subu 99.8 2E-23 4.3E-28 237.1 -6.7 196 87-289 610-885 (1809)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.8 6E-23 1.3E-27 188.3 -4.0 168 88-290 12-190 (198)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.1E-23 2.3E-28 199.5 -10.0 182 94-290 19-233 (247)
389 KOG0066 eIF2-interacting prote 99.8 1.8E-22 3.8E-27 198.6 -3.3 187 64-290 584-776 (807)
390 KOG2355 Predicted ABC-type tra 99.8 2.6E-22 5.7E-27 181.0 -2.2 205 63-290 10-223 (291)
391 KOG0927 Predicted transporter 99.8 1.8E-22 3.9E-27 203.2 -6.9 212 64-290 73-294 (614)
392 COG3845 ABC-type uncharacteriz 99.8 4.6E-22 1E-26 199.0 -4.2 210 62-290 253-478 (501)
393 KOG0062 ATPase component of AB 99.8 4.6E-22 9.9E-27 199.3 -4.3 189 65-290 79-270 (582)
394 TIGR00630 uvra excinuclease AB 99.8 5.5E-22 1.2E-26 216.4 -4.9 91 193-289 808-904 (924)
395 KOG0062 ATPase component of AB 99.8 1.2E-21 2.6E-26 196.3 -5.7 192 63-290 359-554 (582)
396 KOG0064 Peroxisomal long-chain 99.8 8.7E-21 1.9E-25 190.3 -2.6 187 67-290 482-683 (728)
397 COG2401 ABC-type ATPase fused 99.8 1.2E-20 2.7E-25 184.9 -1.6 177 68-275 379-570 (593)
398 COG1245 Predicted ATPase, RNas 99.7 5.6E-21 1.2E-25 189.2 -10.9 195 71-290 79-288 (591)
399 KOG0065 Pleiotropic drug resis 99.7 2.3E-19 4.9E-24 196.2 0.1 188 87-290 130-337 (1391)
400 cd03280 ABC_MutS2 MutS2 homolo 99.7 4.6E-19 9.9E-24 162.6 -4.1 141 88-290 17-165 (200)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.7 9.1E-19 2E-23 162.4 -6.4 73 208-284 121-201 (213)
402 cd03283 ABC_MutS-like MutS-lik 99.7 1.6E-18 3.5E-23 159.2 -5.8 131 87-275 16-150 (199)
403 KOG0066 eIF2-interacting prote 99.7 9.8E-18 2.1E-22 165.4 -0.7 205 66-290 264-484 (807)
404 cd03239 ABC_SMC_head The struc 99.6 3.6E-18 7.9E-23 154.1 -4.0 71 214-290 95-172 (178)
405 cd03241 ABC_RecN RecN ATPase i 99.6 1.3E-17 2.8E-22 160.5 -3.3 72 212-290 169-247 (276)
406 cd03227 ABC_Class2 ABC-type Cl 99.6 5.6E-18 1.2E-22 150.4 -5.6 132 92-290 15-155 (162)
407 cd03282 ABC_MSH4_euk MutS4 hom 99.6 7.3E-17 1.6E-21 148.7 -4.8 137 87-282 18-158 (204)
408 PRK00635 excinuclease ABC subu 99.6 2.2E-16 4.7E-21 180.3 -2.5 91 194-290 1680-1776(1809)
409 cd03243 ABC_MutS_homologs The 99.6 8.7E-17 1.9E-21 147.7 -4.9 138 91-290 22-165 (202)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.2E-16 2.6E-21 149.2 -4.5 140 87-290 19-167 (222)
411 KOG0063 RNAse L inhibitor, ABC 99.5 8E-16 1.7E-20 151.7 -5.8 171 88-290 352-532 (592)
412 COG0178 UvrA Excinuclease ATPa 99.4 4.8E-15 1E-19 155.8 -3.0 89 195-289 804-898 (935)
413 TIGR02858 spore_III_AA stage I 99.4 6.3E-15 1.4E-19 141.3 -2.1 144 99-300 112-268 (270)
414 cd00820 PEPCK_HprK Phosphoenol 99.4 3.8E-14 8.3E-19 117.1 2.1 74 87-178 4-77 (107)
415 cd03242 ABC_RecF RecF is a rec 99.4 1.3E-14 2.9E-19 139.1 -4.2 63 211-282 181-255 (270)
416 TIGR00630 uvra excinuclease AB 99.3 4.2E-14 9E-19 155.0 -7.2 87 196-288 470-561 (924)
417 cd03284 ABC_MutS1 MutS1 homolo 99.3 1E-13 2.2E-18 128.9 -3.8 138 87-290 20-167 (216)
418 PRK00349 uvrA excinuclease ABC 99.3 4.3E-14 9.3E-19 155.1 -7.3 88 195-288 471-563 (943)
419 TIGR01069 mutS2 MutS2 family p 99.3 1.1E-13 2.4E-18 149.8 -5.2 126 91-275 314-447 (771)
420 smart00534 MUTSac ATPase domai 99.3 1.1E-13 2.4E-18 125.5 -4.6 71 199-275 48-124 (185)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.2 1E-12 2.2E-17 122.0 -2.2 130 88-275 19-156 (213)
422 KOG0063 RNAse L inhibitor, ABC 99.2 3.5E-13 7.6E-18 133.3 -5.9 197 66-290 74-288 (592)
423 PF02463 SMC_N: RecF/RecN/SMC 99.1 6.3E-14 1.4E-18 129.9 -13.5 61 211-275 134-201 (220)
424 PRK00409 recombination and DNA 99.1 1.4E-12 3.1E-17 141.6 -5.1 139 92-289 320-464 (782)
425 TIGR03238 dnd_assoc_3 dnd syst 99.1 1.1E-11 2.4E-16 125.7 0.8 65 87-164 21-87 (504)
426 cd01128 rho_factor Transcripti 99.1 4.1E-11 8.9E-16 113.7 1.4 174 93-290 11-208 (249)
427 cd03287 ABC_MSH3_euk MutS3 hom 99.0 1.5E-11 3.3E-16 114.8 -3.8 44 87-130 20-65 (222)
428 PTZ00132 GTP-binding nuclear p 99.0 1.3E-11 2.9E-16 113.8 -6.0 45 212-256 149-203 (215)
429 PRK13695 putative NTPase; Prov 98.9 4.3E-11 9.3E-16 107.2 -3.6 75 209-290 74-150 (174)
430 TIGR02655 circ_KaiC circadian 98.9 1.7E-10 3.7E-15 119.6 -1.3 169 88-290 10-191 (484)
431 PRK07721 fliI flagellum-specif 98.9 3.5E-10 7.7E-15 115.3 0.7 169 87-290 148-329 (438)
432 cd03286 ABC_MSH6_euk MutS6 hom 98.8 1.9E-10 4.1E-15 107.1 -3.5 135 87-281 19-159 (218)
433 TIGR00618 sbcc exonuclease Sbc 98.8 1.3E-10 2.7E-15 130.8 -5.8 78 208-290 945-1035(1042)
434 PHA02562 46 endonuclease subun 98.8 4.2E-10 9E-15 118.4 -3.8 74 209-290 464-551 (562)
435 PRK06002 fliI flagellum-specif 98.8 3E-09 6.6E-14 108.1 2.4 93 63-164 136-229 (450)
436 PF13304 AAA_21: AAA domain; P 98.8 8.9E-11 1.9E-15 107.4 -8.1 64 209-275 232-301 (303)
437 PRK07196 fliI flagellum-specif 98.7 4.3E-09 9.3E-14 106.9 3.0 93 87-184 145-241 (434)
438 PRK06995 flhF flagellar biosyn 98.7 2.9E-09 6.3E-14 109.5 1.3 161 87-289 245-415 (484)
439 cd01124 KaiC KaiC is a circadi 98.7 7.3E-10 1.6E-14 99.4 -4.2 80 208-290 66-164 (187)
440 TIGR00634 recN DNA repair prot 98.7 3.5E-10 7.7E-15 119.3 -7.5 72 212-290 439-517 (563)
441 PRK06793 fliI flagellum-specif 98.6 3.4E-09 7.3E-14 107.6 -1.8 144 65-271 129-284 (432)
442 PRK08533 flagellar accessory p 98.6 3.5E-09 7.6E-14 99.4 -1.6 38 94-131 20-59 (230)
443 cd01130 VirB11-like_ATPase Typ 98.6 2.5E-08 5.4E-13 90.4 3.6 46 88-133 15-61 (186)
444 PRK10869 recombination and rep 98.6 7.4E-10 1.6E-14 116.4 -7.5 71 213-290 430-507 (553)
445 PRK10246 exonuclease subunit S 98.6 1.1E-09 2.3E-14 123.1 -6.9 77 208-289 944-1031(1047)
446 cd01120 RecA-like_NTPases RecA 98.6 3E-09 6.6E-14 92.1 -2.9 34 100-133 1-35 (165)
447 PRK09825 idnK D-gluconate kina 98.5 7.1E-08 1.5E-12 86.9 4.4 68 97-178 2-69 (176)
448 cd01131 PilT Pilus retraction 98.5 3.5E-08 7.6E-13 90.5 2.4 56 223-288 66-121 (198)
449 PRK06315 type III secretion sy 98.5 2.9E-08 6.3E-13 101.1 1.8 123 87-215 154-293 (442)
450 COG3910 Predicted ATPase [Gene 98.5 2.7E-08 5.9E-13 89.5 1.4 63 209-275 125-190 (233)
451 PRK03918 chromosome segregatio 98.5 2.5E-09 5.4E-14 118.2 -6.9 76 209-290 784-868 (880)
452 TIGR00767 rho transcription te 98.5 2.1E-08 4.5E-13 100.5 -0.0 78 41-123 102-193 (415)
453 TIGR02788 VirB11 P-type DNA tr 98.5 5.6E-08 1.2E-12 95.2 2.5 41 91-131 137-178 (308)
454 TIGR00235 udk uridine kinase. 98.4 1.7E-07 3.8E-12 86.3 4.3 70 96-176 4-75 (207)
455 TIGR02168 SMC_prok_B chromosom 98.4 1.2E-08 2.6E-13 115.3 -4.2 75 208-289 1084-1165(1179)
456 PRK10416 signal recognition pa 98.4 5.2E-07 1.1E-11 88.7 6.9 77 96-177 112-190 (318)
457 TIGR00606 rad50 rad50. This fa 98.4 1.9E-08 4.1E-13 115.7 -5.2 73 209-283 1195-1278(1311)
458 PRK13830 conjugal transfer pro 98.3 5E-08 1.1E-12 107.2 -1.8 64 209-275 608-697 (818)
459 PRK01156 chromosome segregatio 98.3 1.3E-08 2.9E-13 112.9 -6.6 78 209-290 797-884 (895)
460 cd02023 UMPK Uridine monophosp 98.3 6.6E-08 1.4E-12 88.2 -1.1 34 100-134 1-34 (198)
461 PRK06067 flagellar accessory p 98.3 7.5E-08 1.6E-12 90.2 -1.4 59 214-275 101-167 (234)
462 TIGR03881 KaiC_arch_4 KaiC dom 98.3 6.8E-08 1.5E-12 90.0 -1.8 170 88-290 9-189 (229)
463 TIGR02169 SMC_prok_A chromosom 98.3 3.8E-08 8.2E-13 111.5 -4.8 74 209-289 1070-1150(1164)
464 PRK08149 ATP synthase SpaL; Va 98.3 3.6E-07 7.7E-12 92.9 2.1 72 87-165 141-216 (428)
465 PRK10078 ribose 1,5-bisphospho 98.2 5.4E-07 1.2E-11 81.6 2.1 36 98-135 2-37 (186)
466 TIGR02322 phosphon_PhnN phosph 98.2 1.6E-06 3.5E-11 77.6 5.1 75 98-172 1-81 (179)
467 TIGR02546 III_secr_ATP type II 98.2 1.4E-06 3.1E-11 88.7 4.5 82 87-173 135-217 (422)
468 PF13555 AAA_29: P-loop contai 98.2 8.2E-07 1.8E-11 66.1 2.0 36 88-123 12-48 (62)
469 PRK07594 type III secretion sy 98.2 9E-07 2E-11 90.1 2.7 63 65-133 128-191 (433)
470 PRK02224 chromosome segregatio 98.1 1.3E-07 2.8E-12 104.8 -4.7 76 209-290 777-868 (880)
471 PRK01889 GTPase RsgA; Reviewed 98.1 9.3E-07 2E-11 88.3 1.5 68 88-168 185-253 (356)
472 PLN02318 phosphoribulokinase/u 98.1 2.1E-06 4.6E-11 89.8 4.1 64 99-179 66-129 (656)
473 PRK07960 fliI flagellum-specif 98.1 1.7E-06 3.8E-11 88.2 3.0 71 87-165 165-239 (455)
474 COG0178 UvrA Excinuclease ATPa 98.1 1.1E-07 2.3E-12 101.3 -6.0 101 197-303 465-579 (935)
475 TIGR00152 dephospho-CoA kinase 98.1 6.5E-07 1.4E-11 81.2 -0.2 71 217-290 61-132 (188)
476 PRK09270 nucleoside triphospha 98.1 2.2E-06 4.7E-11 80.3 3.3 35 96-130 31-66 (229)
477 TIGR00554 panK_bact pantothena 98.1 4.9E-06 1.1E-10 80.8 5.5 38 97-134 61-101 (290)
478 PLN02796 D-glycerate 3-kinase 98.1 9.4E-07 2E-11 87.3 0.5 49 87-135 81-141 (347)
479 cd01125 repA Hexameric Replica 98.1 6.1E-07 1.3E-11 84.5 -0.8 56 216-273 80-159 (239)
480 PRK09862 putative ATP-dependen 98.0 1.3E-06 2.9E-11 90.6 1.2 61 69-135 187-248 (506)
481 cd01136 ATPase_flagellum-secre 98.0 2.5E-06 5.5E-11 84.0 3.1 47 87-134 59-106 (326)
482 PLN03210 Resistant to P. syrin 98.0 2.9E-06 6.3E-11 96.8 3.4 43 91-133 200-244 (1153)
483 TIGR02524 dot_icm_DotB Dot/Icm 98.0 1.6E-06 3.5E-11 86.6 1.0 28 96-123 132-159 (358)
484 PRK09099 type III secretion sy 98.0 3.1E-06 6.6E-11 86.5 2.8 47 87-134 153-200 (441)
485 PRK03846 adenylylsulfate kinas 98.0 4.2E-06 9E-11 76.6 3.2 40 96-135 22-63 (198)
486 TIGR01420 pilT_fam pilus retra 98.0 3.7E-06 7.9E-11 83.6 2.9 37 96-132 120-158 (343)
487 PRK00300 gmk guanylate kinase; 98.0 3.7E-06 8.1E-11 76.8 2.6 28 96-123 3-30 (205)
488 TIGR01026 fliI_yscN ATPase Fli 98.0 4.8E-06 1E-10 85.2 3.4 47 87-134 153-200 (440)
489 TIGR03498 FliI_clade3 flagella 97.9 5.9E-06 1.3E-10 84.0 3.4 47 87-134 130-177 (418)
490 cd01854 YjeQ_engC YjeQ/EngC. 97.9 1.3E-05 2.8E-10 77.8 4.9 41 89-130 153-194 (287)
491 TIGR03497 FliI_clade2 flagella 97.9 7E-06 1.5E-10 83.4 3.1 48 87-135 127-175 (413)
492 PRK11545 gntK gluconate kinase 97.9 6.5E-06 1.4E-10 73.2 2.5 61 104-178 1-61 (163)
493 TIGR02903 spore_lon_C ATP-depe 97.9 1.6E-06 3.6E-11 92.4 -1.7 106 98-255 175-291 (615)
494 PRK05399 DNA mismatch repair p 97.9 1.1E-06 2.3E-11 97.0 -3.4 127 88-275 598-732 (854)
495 TIGR03496 FliI_clade1 flagella 97.9 7.1E-06 1.5E-10 83.3 2.5 63 65-133 110-173 (411)
496 PRK14723 flhF flagellar biosyn 97.9 1.1E-05 2.4E-10 87.1 4.1 48 87-134 174-224 (767)
497 cd02025 PanK Pantothenate kina 97.8 9.2E-06 2E-10 75.8 2.8 31 100-130 1-34 (220)
498 PRK08472 fliI flagellum-specif 97.8 8.6E-06 1.9E-10 83.0 2.7 48 87-135 147-195 (434)
499 cd02026 PRK Phosphoribulokinas 97.8 2E-05 4.2E-10 76.0 4.8 30 100-129 1-31 (273)
500 PRK00098 GTPase RsgA; Reviewed 97.8 2E-05 4.4E-10 76.8 4.9 34 97-130 163-197 (298)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-59 Score=421.48 Aligned_cols=217 Identities=14% Similarity=0.139 Sum_probs=188.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++|+++||+|+|+... +|+||||+|++||+++|+||||||||||||||+||.+ ++|+|+++|.++...
T Consensus 1 ~mi~i~~l~K~fg~~~------VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~----- 69 (240)
T COG1126 1 MMIEIKNLSKSFGDKE------VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDK----- 69 (240)
T ss_pred CeEEEEeeeEEeCCeE------EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccch-----
Confidence 3789999999997544 6999999999999999999999999999999999999 999999999865321
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+...+|+ ++|||||+++|||++||.||+........ .....++++.++|+++||.+..+ .||.+||||||||
T Consensus 70 ---~~~~~~R~-~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~-~yP~qLSGGQqQR 144 (240)
T COG1126 70 ---KDILKLRR-KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD-AYPAQLSGGQQQR 144 (240)
T ss_pred ---hhHHHHHH-hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh-hCccccCcHHHHH
Confidence 14556776 99999999999999999999987653321 11223356777899999998865 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|||||||+++|+++|+|| +|||+...++++.++++ .+.|+|+|+|||+|.+ +.+++|||++|++ +..++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L---A~eGmTMivVTHEM~F--Ar~VadrviFmd~G~iie~g~ 219 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL---AEEGMTMIIVTHEMGF--AREVADRVIFMDQGKIIEEGP 219 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH---HHcCCeEEEEechhHH--HHHhhheEEEeeCCEEEEecC
Confidence 999999999999999999 99999999999999999 4579999999998888 9999999999998 66678
Q ss_pred ccceeeE
Q 016817 296 ISGVYDI 302 (382)
Q Consensus 296 ~~~v~~~ 302 (382)
++++|..
T Consensus 220 p~~~f~~ 226 (240)
T COG1126 220 PEEFFDN 226 (240)
T ss_pred HHHHhcC
Confidence 8888854
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-59 Score=439.77 Aligned_cols=281 Identities=18% Similarity=0.158 Sum_probs=224.5
Q ss_pred hhHHHHHhhhcccC-CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~-~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
||++++|+|.|..+ +..+ .+|+||||+|++||++||||.||||||||+|||++|.. ++|+|.++|+++..+
T Consensus 1 mI~l~~vsK~~~~~~~~~~--~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l----- 73 (339)
T COG1135 1 MIELENVSKTFGQTGTGTV--TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTAL----- 73 (339)
T ss_pred CeEEEeeeeeeccCCCCce--eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccC-----
Confidence 57899999999763 2222 27999999999999999999999999999999999999 899999999977643
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
....++..|+ +|||+||+++|+...||++|+.+.....+. +...++++.++++.+||.+..+ +||.+|||||||||
T Consensus 74 -~~~~Lr~~R~-~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-~yP~qLSGGQKQRV 150 (339)
T COG1135 74 -SEAELRQLRQ-KIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-RYPAQLSGGQKQRV 150 (339)
T ss_pred -ChHHHHHHHh-hccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-cCchhcCcchhhHH
Confidence 3455666776 999999999999999999999876543331 2233467888999999997755 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|+|||+|| +|||++...|+++|+++ +++.|.||++|||.|+. +.++||+|.+|++ +..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I--n~~lglTIvlITHEm~V--vk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDI--NRELGLTIVLITHEMEV--VKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH--HHHcCCEEEEEechHHH--HHHHhhhheEeeCCEEEEeccH
Confidence 99999999999999999 99999999999999999 47889999999997777 9999999999998 777888
Q ss_pred cceeeEEEeccccCCCCcCCchhHHHHHHHHHHHhhhccCCCCCcccchhhHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Q 016817 297 SGVYDIVCLTEYGFPAEECDPVTAYSIAEAIYRALLISDRGHSPKKTFRDWAVLILSCMLCFIA--SFLSLLADLCSRLG 374 (382)
Q Consensus 297 ~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 374 (382)
.++|..| .++.+...+................. ..+..++.+. |.| +..|+++++++++|
T Consensus 227 ~~vF~~P-----------k~~~t~~fi~~~~~~~~~~~~~~~l~---~~~~~~~rl~----f~g~~~~~plis~~~~~~~ 288 (339)
T COG1135 227 SEVFANP-----------KHAITQEFIGETLEIDLPEELLERLE---SGDGPLLRLT----FTGESADQPLLSEVARRFG 288 (339)
T ss_pred HHhhcCc-----------chHHHHHHHHhhccccCcHHHHhhhc---cCCceEEEEE----ecCccccchHHHHHHHHhC
Confidence 8888443 33344433332211111100000000 2455666666 888 99999999999999
Q ss_pred cccc
Q 016817 375 QRGQ 378 (382)
Q Consensus 375 ~~~~ 378 (382)
+++.
T Consensus 289 v~~n 292 (339)
T COG1135 289 VDVN 292 (339)
T ss_pred CceE
Confidence 9875
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-55 Score=404.27 Aligned_cols=219 Identities=15% Similarity=0.137 Sum_probs=190.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++||||+|++.. +++|+||+|++||+++++|||||||||+||+|++|++ ++|+|+++|+++.+...
T Consensus 1 MI~~~nvsk~y~~~~------av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~---- 70 (309)
T COG1125 1 MIEFENVSKRYGNKK------AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDP---- 70 (309)
T ss_pred CceeeeeehhcCCce------eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCH----
Confidence 689999999997544 7999999999999999999999999999999999999 89999999998765443
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccc-cccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKN-DAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSGGqkQRv 222 (382)
.++|+ +||||-|...|||++||.+||..+....+ .....++++.++++++||+. ...+|||++|||||||||
T Consensus 71 -----~~LRr-~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 -----VELRR-KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRV 144 (309)
T ss_pred -----HHHHH-hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHH
Confidence 23776 99999999999999999999988765443 23334567889999999975 345699999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
.+||||+.+|+|||+|| +|||.++..+++.++++ +++.|+|||+||||++. +.+++|+|++|++ +..++|
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~l--q~~l~kTivfVTHDidE--A~kLadri~vm~~G~i~Q~~~P 220 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL--QKELGKTIVFVTHDIDE--ALKLADRIAVMDAGEIVQYDTP 220 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHH--HHHhCCEEEEEecCHHH--HHhhhceEEEecCCeEEEeCCH
Confidence 99999999999999999 99999999999999999 47789999999995554 9999999999997 555677
Q ss_pred cceeeEEE
Q 016817 297 SGVYDIVC 304 (382)
Q Consensus 297 ~~v~~~~~ 304 (382)
.+++..|.
T Consensus 221 ~~il~~Pa 228 (309)
T COG1125 221 DEILANPA 228 (309)
T ss_pred HHHHhCcc
Confidence 77775543
No 4
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-53 Score=413.33 Aligned_cols=218 Identities=15% Similarity=0.109 Sum_probs=188.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.+.++++||+|+|++.. +|+|+||+|++||+++|+||||||||||||+|+|++. ++|+|.++|+++.+.+..
T Consensus 3 ~~~l~i~~v~k~yg~~~------av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~- 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT------AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE- 75 (352)
T ss_pred CceEEEEeeeeecCCee------EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-
Confidence 35789999999997322 6999999999999999999999999999999999999 899999999998765432
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCccccccccccccccCCCccceee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
+ |.||||||++.|||++||.+||.+......... ..++++.++++.++|.++.. ++|++|||||||
T Consensus 76 ----------k-R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-R~p~qLSGGQqQ 143 (352)
T COG3842 76 ----------K-RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-RKPHQLSGGQQQ 143 (352)
T ss_pred ----------h-cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-hChhhhChHHHH
Confidence 2 489999999999999999999988764221111 12357889999999998765 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||||||||+.+|++||||| +||.+.+.++...++++ +++.|.|.|+|||| .+++..++|||++|++ .-.+
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~l--q~~~giT~i~VTHD--qeEAl~msDrI~Vm~~G~I~Q~g 219 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL--QRELGITFVYVTHD--QEEALAMSDRIAVMNDGRIEQVG 219 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHH--HHhcCCeEEEEECC--HHHHhhhccceEEccCCceeecC
Confidence 9999999999999999999 99999999999999999 36789999999995 5559999999999998 4456
Q ss_pred cccceeeEEE
Q 016817 295 EISGVYDIVC 304 (382)
Q Consensus 295 ~~~~v~~~~~ 304 (382)
+|+++|..|.
T Consensus 220 tP~eiY~~P~ 229 (352)
T COG3842 220 TPEEIYERPA 229 (352)
T ss_pred CHHHHhhCcc
Confidence 7777886654
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.5e-53 Score=388.55 Aligned_cols=212 Identities=20% Similarity=0.151 Sum_probs=179.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++||++.|..+...+ .+|+++||+|++||+++|+|||||||||||++|.|+.. ++|.|+++|+++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~--~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l------ 72 (226)
T COG1136 1 MIELKNVSKIYGLGGEKV--EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKL------ 72 (226)
T ss_pred CcEEeeeEEEeccCCcce--EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcC------
Confidence 356899999998665433 27999999999999999999999999999999999999 899999999977543
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
...++..+|+++||||||+++|+|.+|+.||+.......+... ...+.+..+++.+||.+...+++|.+||||||||||
T Consensus 73 ~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA 152 (226)
T COG1136 73 SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA 152 (226)
T ss_pred CHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH
Confidence 3456667888899999999999999999999986542222111 234556778889999977666899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||+|| +||.++.+.|+++|+++. ++.|+||||||||+++ +. +|||++.+++
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~--~~~g~tii~VTHd~~l--A~-~~dr~i~l~d 217 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELN--KERGKTIIMVTHDPEL--AK-YADRVIELKD 217 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH--HhcCCEEEEEcCCHHH--HH-hCCEEEEEeC
Confidence 9999999999999999 999999999999999994 6679999999998877 55 6777776654
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-53 Score=392.38 Aligned_cols=199 Identities=14% Similarity=0.109 Sum_probs=174.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++++++.|+.. . ||+|+||+|++||+++|+||||||||||||+|+||.+ ++|+|.++|+++....
T Consensus 3 ~l~i~~v~~~f~~~--~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~----- 71 (248)
T COG1116 3 LLEIEGVSKSFGGV--E----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG----- 71 (248)
T ss_pred eEEEEeeEEEeCce--E----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----
Confidence 57889999999752 2 6999999999999999999999999999999999999 8999999999763221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..+|||||++.|||+.||.+|+.+.....+ ......+++.++++.+||.++.+ ++|++|||||||||+
T Consensus 72 ----------~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~-~~P~qLSGGMrQRVa 140 (248)
T COG1116 72 ----------PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED-KYPHQLSGGMRQRVA 140 (248)
T ss_pred ----------CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh-cCccccChHHHHHHH
Confidence 379999999999999999999977543322 12223356888999999997755 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||..++..+++.+.+++ ++.++||++||| +++|+..++|||++|.+
T Consensus 141 iARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw--~~~~~TvllVTH--di~EAv~LsdRivvl~~ 206 (248)
T COG1116 141 IARALATRPKLLLLDEPFGALDALTREELQDELLRLW--EETRKTVLLVTH--DVDEAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH--HhhCCEEEEEeC--CHHHHHhhhCEEEEecC
Confidence 9999999999999999 999999999999999995 667899999999 56669999999999976
No 7
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=8.6e-52 Score=367.07 Aligned_cols=207 Identities=21% Similarity=0.188 Sum_probs=182.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+|+||+|.|+.+. ++|+||||+|++||++-|+||||||||||+|+|++..+ ++|+|+++|+++..++.
T Consensus 1 mI~f~~V~k~Y~~g~-----~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~---- 71 (223)
T COG2884 1 MIRFENVSKAYPGGR-----EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG---- 71 (223)
T ss_pred CeeehhhhhhcCCCc-----hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc----
Confidence 688999999998773 27999999999999999999999999999999999999 89999999998875543
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+...+|+ +||+||||+.|.++.||+||+.+.....+. +...++++.++|+.+||.+... ..|.+|||||||||+
T Consensus 72 --~~iP~LRR-~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~-~lP~~LSGGEQQRva 147 (223)
T COG2884 72 --REIPFLRR-QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKAR-ALPSQLSGGEQQRVA 147 (223)
T ss_pred --cccchhhh-eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhh-cCccccCchHHHHHH
Confidence 34445776 999999999999999999999876544332 2233467888999999998766 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||++.+|++||.|| +|||....+|++++.++ ...|+||+|.|||.++ +..+..+++.+++
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei---nr~GtTVl~ATHd~~l--v~~~~~rvl~l~~ 212 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI---NRLGTTVLMATHDLEL--VNRMRHRVLALED 212 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH---hhcCcEEEEEeccHHH--HHhccCcEEEEeC
Confidence 9999999999999999 99999999999999999 4579999999998777 8888888888876
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.5e-52 Score=403.55 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=188.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++||+|.|++.. +|+++||+|++||+++|+||||||||||||+|+||++ ++|+|.|+|+++.+.++.
T Consensus 3 ~i~l~~v~K~yg~~~------~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--- 73 (338)
T COG3839 3 ELELKNVRKSFGSFE------VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--- 73 (338)
T ss_pred EEEEeeeEEEcCCce------eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh---
Confidence 678999999997653 4999999999999999999999999999999999999 999999999998865432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.|.|+||||++.|||+|||++|+.+.....+ .....++++.++++.++|.+.++ ++|.+||||||||||
T Consensus 74 ---------~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-r~P~~LSGGQrQRVA 143 (338)
T COG3839 74 ---------KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-RKPLQLSGGQRQRVA 143 (338)
T ss_pred ---------HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-cCcccCChhhHHHHH
Confidence 1589999999999999999999987654332 22334577889999999998776 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|+++|||| +||...+..+...|+++ +++.|.|+|+||| +..++..++|+|++|++ ...++|.
T Consensus 144 laRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l--h~~l~~T~IYVTH--Dq~EAmtladri~Vm~~G~i~Q~g~p~ 219 (338)
T COG3839 144 LARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL--HERLGTTTIYVTH--DQVEAMTLADRIVVMNDGRIQQVGTPL 219 (338)
T ss_pred HHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH--HHhcCCcEEEEcC--CHHHHHhhCCEEEEEeCCeeeecCChH
Confidence 9999999999999999 89999999999999998 3667999999999 45559999999999986 4566777
Q ss_pred ceeeEEE
Q 016817 298 GVYDIVC 304 (382)
Q Consensus 298 ~v~~~~~ 304 (382)
++|+.|.
T Consensus 220 ely~~P~ 226 (338)
T COG3839 220 ELYERPA 226 (338)
T ss_pred HHhhCcc
Confidence 7886554
No 9
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.2e-52 Score=391.25 Aligned_cols=228 Identities=16% Similarity=0.085 Sum_probs=196.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++.. +|+|+||+|++||+++|+||||||||||||+|+|+++ .+|+|+++|+++.+++.
T Consensus 2 ~L~~~~ls~~y~~~~------il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~---- 71 (258)
T COG1120 2 MLEVENLSFGYGGKP------ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSP---- 71 (258)
T ss_pred eeEEEEEEEEECCee------EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCH----
Confidence 578899999997433 6999999999999999999999999999999999999 89999999998765432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh---c--CccccccccccCccccccccccccccCCCcccee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS---E--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
++.+ +.++|++|.+...+.+||+|.+...+..+. . ...+.+.+.++++.+|+.++.. |...+||||||
T Consensus 72 --kelA----k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-r~~~~LSGGer 144 (258)
T COG1120 72 --KELA----KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-RPVDELSGGER 144 (258)
T ss_pred --HHHh----hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-CcccccChhHH
Confidence 2322 489999999776667999999987754321 1 2223456888999999997765 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccc
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGV 293 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~ 293 (382)
|||.|||||+++|++||||| +||..++.+++++++++. +++|+|||+|+||+++ +.++||++++|++ +..
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~--~~~~~tvv~vlHDlN~--A~ryad~~i~lk~G~i~a~ 220 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN--REKGLTVVMVLHDLNL--AARYADHLILLKDGKIVAQ 220 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEECCeEEee
Confidence 99999999999999999999 999999999999999994 6779999999999888 9999999999997 778
Q ss_pred ccccceeeEEEecc-ccCCCCc
Q 016817 294 SEISGVYDIVCLTE-YGFPAEE 314 (382)
Q Consensus 294 ~~~~~v~~~~~l~~-~~~~~~~ 314 (382)
|.|+++++.+.+++ |+++...
T Consensus 221 G~p~evlT~e~l~~Vygv~~~~ 242 (258)
T COG1120 221 GTPEEVLTEENLREVYGVDADV 242 (258)
T ss_pred cCcchhcCHHHHHHHhCCceEE
Confidence 88899999999888 9987543
No 10
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-51 Score=373.09 Aligned_cols=209 Identities=15% Similarity=0.129 Sum_probs=183.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+++||++.|+++.. +|+||||+|++||+++||||||||||||||+|+|+.+ ++|+|.++|.++..
T Consensus 2 ~~i~~~nl~k~yp~~~~-----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~------ 70 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ-----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITK------ 70 (258)
T ss_pred ceEEEeeeeeecCCCce-----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhc------
Confidence 47899999999975542 7999999999999999999999999999999999999 89999999986643
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh--------hh-cCccccccccccCccccccccccccccCCC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW--------MS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~--------~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
+...+++.+|+ ++||+||+++|.+.++|.+|+...... ++ ....++.++.++|+++|+.+... ++.++|
T Consensus 71 ~~~k~lr~~r~-~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-qra~~L 148 (258)
T COG3638 71 LKGKELRKLRR-DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-QRASTL 148 (258)
T ss_pred cchHHHHHHHH-hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-HHhccC
Confidence 33456677886 999999999999999999999775421 11 12234456778999999998876 899999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+++|+++|.|| +|||.+.+.+++.|++++ ++.|.|+|+..|++++ +.+||+||+-|++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in--~~~g~Tvi~nLH~vdl--A~~Y~~Riigl~~ 223 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDIN--QEDGITVIVNLHQVDL--AKKYADRIIGLKA 223 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHH--HHcCCEEEEEechHHH--HHHHHhhheEecC
Confidence 9999999999999999999999999 999999999999999994 7789999999997777 9999999999987
No 11
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-50 Score=361.00 Aligned_cols=219 Identities=16% Similarity=0.129 Sum_probs=186.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~ 137 (382)
...++++|+++.|+... +|+|||++|++++++|||||||||||||||+++++.+ . +|+|.++|+++.+
T Consensus 5 ~~~~~~~~l~~yYg~~~------aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH------ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECchh------hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 45688999999997654 7999999999999999999999999999999999986 3 6999999998764
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccc---cccCC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEI---DDLKS 213 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~---~~~~~ 213 (382)
.. .+..++|+ ++|||||.|+.|| +|++||+.++.+..+ ....-++.+++.|+.+.|.+...| +.+..
T Consensus 79 ~~-------~d~~~lRr-~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~ 149 (253)
T COG1117 79 PK-------VDVVELRR-RVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALG 149 (253)
T ss_pred CC-------CCHHHHHH-HheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccC
Confidence 32 23345776 9999999999999 999999998876554 222334678888999988764433 56788
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||++|||||+.+|+|||||| +|||.+...|.++|.+| + +..|||+|||+|.. +.+++|+..++..
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eL---k-~~yTIviVTHnmqQ--AaRvSD~taFf~~ 223 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL---K-KKYTIVIVTHNMQQ--AARVSDYTAFFYL 223 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHH---H-hccEEEEEeCCHHH--HHHHhHhhhhhcc
Confidence 99999999999999999999999999 99999999999999999 3 56899999996666 9999999887765
Q ss_pred ---cccccccceeeEE
Q 016817 291 ---LGVSEISGVYDIV 303 (382)
Q Consensus 291 ---~~~~~~~~v~~~~ 303 (382)
+..++++++|+.|
T Consensus 224 G~LvE~g~T~~iF~~P 239 (253)
T COG1117 224 GELVEFGPTDKIFTNP 239 (253)
T ss_pred cEEEEEcCHHhhhcCc
Confidence 7888899999765
No 12
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-50 Score=379.52 Aligned_cols=219 Identities=16% Similarity=0.133 Sum_probs=184.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+++|++++|+++. ||+||||+|++|++++|+||||||||||+|+|+|+++ .+|+|.++|++......
T Consensus 3 ~~i~v~nl~v~y~~~~------vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--- 73 (254)
T COG1121 3 PMIEVENLTVSYGNRP------VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--- 73 (254)
T ss_pred cEEEEeeeEEEECCEe------eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---
Confidence 4789999999997542 5999999999999999999999999999999999999 89999999986543221
Q ss_pred ehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhh----hh-cCccccccccccCccccccccccccccCCCc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSW----MS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~----~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
+ .+||||||.. .-|| .||+|.+...... +. ....+++.+.++|+++|+.++. ++.+.+||
T Consensus 74 ---------~-~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-~r~i~~LS 141 (254)
T COG1121 74 ---------R-LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-DRQIGELS 141 (254)
T ss_pred ---------C-CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-CCcccccC
Confidence 1 3799999954 3466 8999999765321 11 1223457889999999999765 49999999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY-- 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~-- 290 (382)
|||+|||.|||||+++|++|+||| ++|+.++..+.++|+++ +++|+||+|||||+.. +..++|+|++++.
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l---~~eg~tIl~vtHDL~~--v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL---RQEGKTVLMVTHDLGL--VMAYFDRVICLNRHL 216 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCcHH--hHhhCCEEEEEcCee
Confidence 999999999999999999999999 99999999999999999 3349999999997776 9999999999998
Q ss_pred cccccccceeeEEEecc-cc
Q 016817 291 LGVSEISGVYDIVCLTE-YG 309 (382)
Q Consensus 291 ~~~~~~~~v~~~~~l~~-~~ 309 (382)
+..++++++++.+.+.. |+
T Consensus 217 ~~~G~~~~~~~~~~l~~~~g 236 (254)
T COG1121 217 IASGPPEEVLTEENLEKAFG 236 (254)
T ss_pred EeccChhhccCHHHHHHHhC
Confidence 77888888887666544 54
No 13
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-50 Score=379.18 Aligned_cols=220 Identities=15% Similarity=0.090 Sum_probs=185.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|+++.|+.-. +++||||+|+.||.+||+||||||||||||+|+||+. ++|+|.++|+.+.+.+..
T Consensus 2 ~i~i~~~~~~~~~~~------a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--- 72 (345)
T COG1118 2 SIRINNVKKRFGAFG------ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--- 72 (345)
T ss_pred ceeehhhhhhccccc------ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc---
Confidence 578899999997654 7999999999999999999999999999999999999 899999999944433221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cC--ccccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EG--VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~--~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..|.++||||||++.||+++||.+||.+...... .. ...+.++.++|+.+.|+... ++||.+||||||||
T Consensus 73 ------~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-~ryP~QLSGGQrQR 145 (345)
T COG1118 73 ------AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-DRYPAQLSGGQRQR 145 (345)
T ss_pred ------chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-hcCchhcChHHHHH
Confidence 1333689999999999999999999988653221 11 22345678889999999664 59999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
||+||||+.+|++||||| +||..-+.++...|+++. .+.|.|+++||||+ +++.+.+|+|++|++ ...++
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~--~~~~~ttvfVTHD~--eea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH--DRLGVTTVFVTHDQ--EEALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHH--HhhCceEEEEeCCH--HHHHhhcceEEEecCCeeeeeCC
Confidence 999999999999999999 999999999999999983 55699999999955 459999999999998 34567
Q ss_pred ccceeeEEEe
Q 016817 296 ISGVYDIVCL 305 (382)
Q Consensus 296 ~~~v~~~~~l 305 (382)
+.++|+.|.-
T Consensus 222 p~ev~~~P~s 231 (345)
T COG1118 222 PDEVYDHPAS 231 (345)
T ss_pred HHHHhcCCCc
Confidence 7778876554
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.7e-50 Score=365.98 Aligned_cols=221 Identities=18% Similarity=0.153 Sum_probs=187.0
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+.+.|++++|+++|++.. +++|+||+|++||+++|+||||||||||+|+|.|+++ ++|+|+++|+++...+
T Consensus 5 ~~~~I~vr~v~~~fG~~~------Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls-- 76 (263)
T COG1127 5 PEPLIEVRGVTKSFGDRV------ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLS-- 76 (263)
T ss_pred CcceEEEeeeeeecCCEE------EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccC--
Confidence 356899999999996543 6999999999999999999999999999999999999 8999999999876443
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc---ccccccccCccccccccccccccCCCccce
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH---HNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
..++.++|+ ++|++||+..||..+||+||+.+....+. ..+ .++.+..-++.+||.....+++|++|||||
T Consensus 77 ----~~~~~~ir~-r~GvlFQ~gALFssltV~eNVafplre~~-~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM 150 (263)
T COG1127 77 ----EEELYEIRK-RMGVLFQQGALFSSLTVFENVAFPLREHT-KLPESLIRELVLMKLELVGLRGAAADLYPSELSGGM 150 (263)
T ss_pred ----HHHHHHHHh-heeEEeeccccccccchhHhhheehHhhc-cCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchH
Confidence 344555776 89999999999999999999987543322 111 123445568899998774569999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
++||+|||||+.+|+||++|| ||||.+...+-++|+++ +..-|.|++||||| ++++..+||+++++.+ +.
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L--~~~lg~T~i~VTHD--l~s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIREL--NDALGLTVIMVTHD--LDSLLTIADRVAVLADGKVIA 226 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH--HHhhCCEEEEEECC--hHHHHhhhceEEEEeCCEEEE
Confidence 999999999999999999999 99999999999999999 36679999999995 4559999999999987 66
Q ss_pred cccccceee
Q 016817 293 VSEISGVYD 301 (382)
Q Consensus 293 ~~~~~~v~~ 301 (382)
.++++++..
T Consensus 227 ~Gt~~el~~ 235 (263)
T COG1127 227 EGTPEELLA 235 (263)
T ss_pred eCCHHHHHh
Confidence 677766663
No 15
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=366.04 Aligned_cols=220 Identities=17% Similarity=0.113 Sum_probs=183.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|+++.|+.+.... ++|++|||+|.+||++||+|+||||||||.|+|+|+.+ ++|+|+++|+++......
T Consensus 2 ~~l~v~nl~~~y~~~~~~~--~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~-- 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAF--HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRA-- 77 (252)
T ss_pred ceEEEeceEEEecCCcchh--hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccc--
Confidence 3788999999998665322 37999999999999999999999999999999999999 899999999865422111
Q ss_pred ehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...+ +.+.||||||. +.|..||.+.+.+.....+. ....+++.++++.+||.+.+.+++|++|||||+||
T Consensus 78 ------~~~~-~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~-~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR 149 (252)
T COG1124 78 ------KAFY-RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL-SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR 149 (252)
T ss_pred ------hhhc-cceeEEecCCccccCcchhHHHHHhhhhccCCc-cHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH
Confidence 0123 48999999974 78999999998775432111 12234588899999998877779999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|||||||+.+|++||||| +||+..+.+|+++|.++ +++++.|.||||||+.+ +.++||||++|++ +...+
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l--~~~~~lt~l~IsHdl~~--v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL--KKERGLTYLFISHDLAL--VEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHH--HHhcCceEEEEeCcHHH--HHHHhhheeeeeCCeEEEeec
Confidence 999999999999999999 99999999999999999 47789999999998887 9999999999998 55555
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
..+++
T Consensus 226 ~~~l~ 230 (252)
T COG1124 226 TEELL 230 (252)
T ss_pred hhhhh
Confidence 55555
No 16
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3e-49 Score=390.15 Aligned_cols=222 Identities=14% Similarity=0.121 Sum_probs=181.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++|++++|+.++... ++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 1 mI~~~~lsk~y~~~~~~~--~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~----- 73 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTI--QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLS----- 73 (343)
T ss_pred CEEEEEEEEEECCCCcce--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-----
Confidence 578999999996432111 16999999999999999999999999999999999999 8999999999765332
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..+....|+ +|||+||++.+|+..|+.+|+.+.....+. .....+++.++++.+||.+..+ ++|.+|||||||||+
T Consensus 74 -~~~l~~~r~-~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 74 -NSELTKARR-QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-SYPSNLSGGQKQRVA 150 (343)
T ss_pred -HHHHHHHhc-CEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHH
Confidence 223333454 899999999999999999999765322111 1112345678899999987654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||++. +.++||++++|++ +..+++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~--~~~g~tiiliTH~~~~--v~~~~d~v~vl~~G~iv~~g~~~ 226 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEIN--RRLGLTILLITHEMDV--VKRICDCVAVISNGELIEQGTVS 226 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 4458999999996666 9999999999987 5556666
Q ss_pred ceee
Q 016817 298 GVYD 301 (382)
Q Consensus 298 ~v~~ 301 (382)
+++.
T Consensus 227 ~v~~ 230 (343)
T TIGR02314 227 EIFS 230 (343)
T ss_pred HHHc
Confidence 6664
No 17
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3e-46 Score=326.82 Aligned_cols=211 Identities=16% Similarity=0.095 Sum_probs=181.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..|++++++++.+.+...++ +|++|+|.|++||.+|||||||||||||+-+++||.. ++|+|++.|+++..+
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~--IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~l----- 77 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELS--ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL----- 77 (228)
T ss_pred ceeehhhhhhhhcCCCccee--EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhc-----
Confidence 37899999999987765553 7999999999999999999999999999999999999 899999999976533
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
....++.+|.+++|||||.+.|.|++|..||+.......+... .....+.+.++.+||.+.+. .||.+|||||||||
T Consensus 78 -dEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~-HyP~qLSGGEQQRV 155 (228)
T COG4181 78 -DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-HYPAQLSGGEQQRV 155 (228)
T ss_pred -CHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccc-cCccccCchHHHHH
Confidence 3456677888899999999999999999999976543332212 22345778899999998876 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+||||++..|+||+.|| +||..+-.+|.++|-.+ +++.|+|.|+||||+.+ +.++ +|.+-|.
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l--nre~G~TlVlVTHD~~L--A~Rc-~R~~r~~ 220 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL--NRERGTTLVLVTHDPQL--AARC-DRQLRLR 220 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH--hhhcCceEEEEeCCHHH--HHhh-hheeeee
Confidence 99999999999999999 99999999999999998 48899999999998888 7764 4444443
No 18
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-46 Score=330.47 Aligned_cols=227 Identities=12% Similarity=0.071 Sum_probs=192.4
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc----
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~---- 138 (382)
.+.++++|+.|+|+... +|++|||+.++|+++.|||.|||||||+||||+=|.. +.|.|.++|+.+.-.
T Consensus 4 ~~~l~v~dlHK~~G~~e------VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 4 ENALEVEDLHKRYGEHE------VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ccceehhHHHhhcccch------hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCC
Confidence 45789999999997665 7999999999999999999999999999999999988 799999999876421
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHh-hhh-cCccccccccccCccccccccccccccCCCcc
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSS-WMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~-~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
........++...+|. +.|||||+++|++++|+.||+.+... .++ .+....++++.+|.++|+.+..+ .||..|||
T Consensus 78 G~l~~ad~~q~~r~Rs-~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~~LSG 155 (256)
T COG4598 78 GQLKPADKRQLQRLRT-RLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPAHLSG 155 (256)
T ss_pred CCeeeCCHHHHHHHHH-HhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCccccCc
Confidence 1222334567777887 89999999999999999999977542 222 11222356677899999997765 99999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--- 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--- 290 (382)
|||||++|||||+++|+++|+|| +|||+...++++.++++ .+.|+|+++|||.|.+ +...+..|+++++
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L---AeEgrTMv~VTHEM~F--AR~Vss~v~fLh~G~i 230 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL---AEEGRTMVVVTHEMGF--ARDVSSHVIFLHQGKI 230 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH---HHhCCeEEEEeeehhH--HHhhhhheEEeeccee
Confidence 99999999999999999999999 99999999999999999 4679999999997777 9999999999988
Q ss_pred cccccccceeeEE
Q 016817 291 LGVSEISGVYDIV 303 (382)
Q Consensus 291 ~~~~~~~~v~~~~ 303 (382)
-..|+|+++|..|
T Consensus 231 EE~G~P~qvf~nP 243 (256)
T COG4598 231 EEEGPPEQVFGNP 243 (256)
T ss_pred cccCChHHHhcCC
Confidence 4567888898543
No 19
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=356.78 Aligned_cols=207 Identities=18% Similarity=0.178 Sum_probs=181.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
.++|+||+|++||++.|+|-||||||||+|+|+||++ ++|+|+++|.++.. +...++..+|+++++||||++.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~------~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK------LSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhc------CCHHHHHHHHhhhhhhhhhhhc
Confidence 5899999999999999999999999999999999999 89999999997753 3456777889889999999999
Q ss_pred CCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 166 GFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|+|+.||.+|+.+.....+ .....++++.++++.+||..+. ++||++|||||||||.|||||+.+|+|||+|| +|
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~-~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSAL 195 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA-DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSAL 195 (386)
T ss_pred cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh-hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhc
Confidence 9999999999987654333 2223345678889999999765 49999999999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceeeEEE
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYDIVC 304 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~~~~ 304 (382)
||--+.++++.|.++ +++.++||++|||| ++++.++.+||.+|++ +..|.|++++..|.
T Consensus 196 DPLIR~~mQdeLl~L--q~~l~KTIvFitHD--LdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 196 DPLIRTEMQDELLEL--QAKLKKTIVFITHD--LDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ChHHHHHHHHHHHHH--HHHhCCeEEEEecC--HHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence 999999999999998 46678999999995 5559999999999998 66677788886654
No 20
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-47 Score=376.50 Aligned_cols=217 Identities=12% Similarity=0.050 Sum_probs=181.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++|+++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+.+.
T Consensus 4 ~~~l~~~~l~~~~~~~--~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~-- 75 (351)
T PRK11432 4 KNFVVLKNITKRFGSN--T----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI-- 75 (351)
T ss_pred CcEEEEEeEEEEECCe--E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--
Confidence 4588999999999642 2 5999999999999999999999999999999999999 89999999997753221
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+ +.+|||||++.+|+++||.+|+.+........ ....+++.++++.+++.+.. +++|.+||||||||
T Consensus 76 ---------~~-r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~-~r~~~~LSgGq~QR 144 (351)
T PRK11432 76 ---------QQ-RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE-DRYVDQISGGQQQR 144 (351)
T ss_pred ---------HH-CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHH
Confidence 12 48999999999999999999998754221111 11235677889999998765 49999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+..+..+.+.|+++. ++.|+|+|+||||++. +..+||+|++|++ +..++
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tii~vTHd~~e--~~~laD~i~vm~~G~i~~~g~ 220 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ--QQFNITSLYVTHDQSE--AFAVSDTVIVMNKGKIMQIGS 220 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEcCCHHH--HHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999 999999999999999983 4568999999995554 9999999999987 45566
Q ss_pred ccceeeEE
Q 016817 296 ISGVYDIV 303 (382)
Q Consensus 296 ~~~v~~~~ 303 (382)
+++++..|
T Consensus 221 ~~~~~~~p 228 (351)
T PRK11432 221 PQELYRQP 228 (351)
T ss_pred HHHHHhCC
Confidence 66666543
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-47 Score=377.54 Aligned_cols=216 Identities=14% Similarity=0.073 Sum_probs=179.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.+.+.
T Consensus 3 ~l~i~~l~~~~~~~~-~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~---- 73 (356)
T PRK11650 3 GLKLQAVRKSYDGKT-Q----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP---- 73 (356)
T ss_pred EEEEEeEEEEeCCCC-E----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH----
Confidence 578999999994222 2 5999999999999999999999999999999999999 89999999997753221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.+|||||++.+|+++||++|+.+........ ....+++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 74 -------~~-r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~QRva 144 (356)
T PRK11650 74 -------AD-RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-RKPRELSGGQRQRVA 144 (356)
T ss_pred -------HH-CCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHH
Confidence 12 38999999999999999999997754221111 112345778899999987654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|+|+||||++. +..+||++++|++ +..++++
T Consensus 145 lARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tii~vTHd~~e--a~~l~D~i~vl~~G~i~~~g~~~ 220 (356)
T PRK11650 145 MGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH--RRLKTTSLYVTHDQVE--AMTLADRVVVMNGGVAEQIGTPV 220 (356)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEeCCEEEEECCHH
Confidence 9999999999999999 999999999999999983 4458999999995554 9999999999987 4456666
Q ss_pred ceeeEE
Q 016817 298 GVYDIV 303 (382)
Q Consensus 298 ~v~~~~ 303 (382)
+++..+
T Consensus 221 ~~~~~p 226 (356)
T PRK11650 221 EVYEKP 226 (356)
T ss_pred HHHhCC
Confidence 676543
No 22
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-46 Score=389.28 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=207.1
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhh-h-----hc-CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL-A-----LI-APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~-~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
....++..++.+.+++-++..+.+|+.++++.+|. + .+ ...+.|+|+||+|+|+..... ++|+|+||+|+
T Consensus 416 ~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~---~Vlk~lsfti~ 492 (716)
T KOG0058|consen 416 QLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDV---PVLKNLSFTIR 492 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCc---hhhcCceeeeC
Confidence 34567788889999999999999999999999874 1 11 245789999999999876432 37999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||++|||||||+||||++++|.++|+ ++|+|.+||+|+.++... .+|+ +||+|-|+|.||. .||+||
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~---------~lr~-~Ig~V~QEPvLFs-~sI~eN 561 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHK---------YLRR-KIGLVGQEPVLFS-GSIREN 561 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHH---------HHHH-Heeeeeccceeec-ccHHHH
Confidence 999999999999999999999999999 899999999998766543 2665 9999999999998 899999
Q ss_pred HHHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|.+.. ....++++.++.++.+..+++. ..|. +||||||||+||||||+++|.|||||| +|
T Consensus 562 I~YG~-----~~~t~e~i~~AAk~ANah~FI~-~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 562 IAYGL-----DNATDEEIEAAAKMANAHEFIT-NFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSAL 635 (716)
T ss_pred HhcCC-----CCCCHHHHHHHHHHhChHHHHH-hCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhc
Confidence 96542 3455677888888877766554 3333 599999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|.+++..+.+.|.++. +++|||+|+| +++++++ +|+|+++++ ...|.-++.+
T Consensus 636 DaeSE~lVq~aL~~~~----~~rTVlvIAH--RLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 636 DAESEYLVQEALDRLM----QGRTVLVIAH--RLSTVRH-ADQIVVIDKGRVVEMGTHDELL 690 (716)
T ss_pred chhhHHHHHHHHHHhh----cCCeEEEEeh--hhhHhhh-ccEEEEEcCCeEEecccHHHHh
Confidence 9999999999999874 5799999999 9988886 556666665 4445444454
No 23
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-46 Score=331.10 Aligned_cols=200 Identities=17% Similarity=0.117 Sum_probs=170.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|+.+++|.++|+.-. . .++++|+.||++||+||||||||||+|+|+|++. .+|+|+++|++....++
T Consensus 1 ~l~L~~V~~~y~~~~--~------~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P---- 68 (231)
T COG3840 1 MLALDDVRFSYGHLP--M------RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP---- 68 (231)
T ss_pred CccccceEEeeCcce--E------EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc----
Confidence 467788999995432 1 4588999999999999999999999999999999 89999999998754332
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh-hhcCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW-MSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
++ +-++++||+++||.++||.+|+...... +.-...++++++.++.++||..+.+ +.|.+||||||||||
T Consensus 69 -------~~-RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~-RLP~~LSGGqRQRvA 139 (231)
T COG3840 69 -------AE-RPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLK-RLPGELSGGQRQRVA 139 (231)
T ss_pred -------cc-CChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhh-hCccccCchHHHHHH
Confidence 22 3799999999999999999999654321 1111234567888999999998765 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|+++-+|||||| +|||.-+.+++.++.+++ .+++.|++|||| ..+++.+++++++++++
T Consensus 140 LARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~--~E~~~TllmVTH--~~~Da~~ia~~~~fl~~ 205 (231)
T COG3840 140 LARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC--DERKMTLLMVTH--HPEDAARIADRVVFLDN 205 (231)
T ss_pred HHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH--HhhCCEEEEEeC--CHHHHHHhhhceEEEeC
Confidence 9999999999999999 999999999999999995 778999999999 66669999999999987
No 24
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-46 Score=350.75 Aligned_cols=217 Identities=18% Similarity=0.167 Sum_probs=182.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|+++ .. +|+++||+|++|++++|+||||||||||+++++|+++ ++|+|.++|.++..
T Consensus 2 ~~i~~~~l~~~y~~~-~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~------ 70 (235)
T COG1122 2 RMIEAENLSFRYPGR-KA----ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS------ 70 (235)
T ss_pred ceEEEEEEEEEcCCC-ce----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccc------
Confidence 367889999999876 22 6999999999999999999999999999999999999 89999999987542
Q ss_pred ehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
......+|+ ++|||||+| .+|. -||.+.+.+....++... ..++++.++++.+|+.+..+ +.|++|||||||
T Consensus 71 --~~~~~~~~~-~vG~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-r~p~~LSGGqkq 145 (235)
T COG1122 71 --EKSLLELRQ-KVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-RPPFNLSGGQKQ 145 (235)
T ss_pred --hhhHHHhhc-ceEEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-CCccccCCccee
Confidence 112233555 899999997 4554 799999987765443222 23467888999999998754 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
|||||.+|+++|++||||| +||+..+..+++.++++. .+.|+|+|++|||++. +..+||++++|++ +..+
T Consensus 146 RvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~--~~~~~tii~~tHd~~~--~~~~ad~v~vl~~G~i~~~g 221 (235)
T COG1122 146 RVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK--EEGGKTIIIVTHDLEL--VLEYADRVVVLDDGKILADG 221 (235)
T ss_pred eHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH--hcCCCeEEEEeCcHHH--HHhhCCEEEEEECCEEeecC
Confidence 9999999999999999999 999999999999999993 4457999999997766 9999999999987 4566
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
.+.++|.
T Consensus 222 ~p~~i~~ 228 (235)
T COG1122 222 DPAEIFN 228 (235)
T ss_pred CHHHHhh
Confidence 6666764
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.2e-47 Score=375.42 Aligned_cols=216 Identities=11% Similarity=0.058 Sum_probs=180.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+...
T Consensus 3 ~~l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--- 73 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFT------ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--- 73 (353)
T ss_pred cEEEEEEEEEEeCCeE------EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH---
Confidence 3688999999996432 5999999999999999999999999999999999999 89999999997653221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.+ +.+||+||++.+||++||.+|+.+....... .....+++.++++.++|.+.++ ++|.+|||||||||
T Consensus 74 --------~~-r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-~~~~~LSgGq~QRv 143 (353)
T TIGR03265 74 --------QK-RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-KYPGQLSGGQQQRV 143 (353)
T ss_pred --------HH-CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-CChhhCCHHHHHHH
Confidence 12 3899999999999999999999775422111 1112356788999999987655 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+..+..+.+.|+++. ++.|.|+|+||||++ ++..+||++++|++ +..+++
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~--~~~~~tvi~vTHd~~--ea~~l~d~i~vl~~G~i~~~g~~ 219 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ--RRLGVTTIMVTHDQE--EALSMADRIVVMNHGVIEQVGTP 219 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEcCCHH--HHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999 999999999999999983 556899999999555 49999999999987 455666
Q ss_pred cceeeEE
Q 016817 297 SGVYDIV 303 (382)
Q Consensus 297 ~~v~~~~ 303 (382)
.+++..+
T Consensus 220 ~~~~~~p 226 (353)
T TIGR03265 220 QEIYRHP 226 (353)
T ss_pred HHHHhCC
Confidence 6676543
No 26
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=346.47 Aligned_cols=223 Identities=17% Similarity=0.138 Sum_probs=189.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+++++++++++|++-. +++||||+|++||+++||||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 3 ~lL~v~~l~k~FGGl~------Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p--- 73 (250)
T COG0411 3 PLLEVRGLSKRFGGLT------AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP--- 73 (250)
T ss_pred ceeeeccceeecCCEE------EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCH---
Confidence 4678999999996433 6999999999999999999999999999999999999 89999999998765442
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-------hcC------ccccccccccCccccccccccccc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-------SEG------VHHNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-------~~~------~~~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
.+. .| ..|+-.||.+.+|+.+||.||+....... +.+ ....+++.++|+.+||.+..+ ++
T Consensus 74 ---~~i--ar-~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~-~~ 146 (250)
T COG0411 74 ---HRI--AR-LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD-RP 146 (250)
T ss_pred ---HHH--Hh-ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc-ch
Confidence 222 23 37889999999999999999997653211 100 112255677899999997765 99
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
..+||+|||+|+.|||||+.+|++||||| ++.+....++.+.|+++. ++.|.||++|.|||++ +..+||||++
T Consensus 147 A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~--~~~g~tillIEHdM~~--Vm~l~dri~V 222 (250)
T COG0411 147 AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR--DRGGVTILLIEHDMKL--VMGLADRIVV 222 (250)
T ss_pred hhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHH--hcCCcEEEEEEeccHH--HhhhccEEEe
Confidence 99999999999999999999999999999 999999999999999993 4467999999999888 9999999999
Q ss_pred hhh---cccccccceeeEEEecc
Q 016817 288 CEY---LGVSEISGVYDIVCLTE 307 (382)
Q Consensus 288 l~~---~~~~~~~~v~~~~~l~~ 307 (382)
|+. +..|+|++|.++|.+.+
T Consensus 223 l~~G~~IAeG~P~eV~~dp~Vie 245 (250)
T COG0411 223 LNYGEVIAEGTPEEVRNNPRVIE 245 (250)
T ss_pred ccCCcCcccCCHHHHhcCHHhHH
Confidence 987 88899999987765544
No 27
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.7e-46 Score=374.60 Aligned_cols=218 Identities=16% Similarity=0.086 Sum_probs=181.4
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 11 ~~~~L~l~~l~~~~~~~~------~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~- 83 (375)
T PRK09452 11 LSPLVELRGISKSFDGKE------VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA- 83 (375)
T ss_pred CCceEEEEEEEEEECCeE------EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-
Confidence 456799999999996422 5999999999999999999999999999999999999 89999999997643221
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
.+ +.+||+||++.+|+++||.+|+.+.....+.. ....+++.++++.++|.+..+ ++|.+|||||||
T Consensus 84 ----------~~-r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~p~~LSgGq~Q 151 (375)
T PRK09452 84 ----------EN-RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-RKPHQLSGGQQQ 151 (375)
T ss_pred ----------HH-CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHH
Confidence 12 37999999999999999999997653211111 111345677899999987655 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+|||||+.+|++||||| +||+..+..+.+.|+++. ++.|.|+|+||||++. +..++|++++|++ ...+
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~--~~~g~tiI~vTHd~~e--a~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ--RKLGITFVFVTHDQEE--ALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999 999999999999999983 4568999999996555 9999999999987 4456
Q ss_pred cccceeeEE
Q 016817 295 EISGVYDIV 303 (382)
Q Consensus 295 ~~~~v~~~~ 303 (382)
++.+++..|
T Consensus 228 ~~~~i~~~p 236 (375)
T PRK09452 228 TPREIYEEP 236 (375)
T ss_pred CHHHHHhCc
Confidence 666676544
No 28
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.4e-46 Score=396.08 Aligned_cols=249 Identities=16% Similarity=0.164 Sum_probs=210.3
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh--------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
+++.|+..++.+..+++....+.+|+.++++.+++.. +.-.+.|+++||+|+|+....+ +|+|+||+|
T Consensus 421 ~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~----vL~~isL~I 496 (709)
T COG2274 421 YFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPP----VLEDLSLEI 496 (709)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcc----hhhceeEEe
Confidence 5789999999999999999999999999999987621 1224579999999999876533 599999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++||++||+|+||||||||+|+|.|+++ ++|+|++||.|+.+.. ...+|+ +||||+||+.+|. .|++|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~---------~~~lR~-~ig~V~Q~~~Lf~-gSI~e 565 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID---------LASLRR-QVGYVLQDPFLFS-GSIRE 565 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcC---------HHHHHh-heeEEcccchhhc-CcHHH
Confidence 9999999999999999999999999999 8999999999876443 233676 9999999999998 89999
Q ss_pred hHHHHHhhhhcCccccccccccCccccccccccccccCC-----------CccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-----------SPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----------LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
|+... .+....+++.++++..|+.+++. +.|.+ ||||||||++|||||+++|+|||||| +
T Consensus 566 Ni~l~-----~p~~~~e~i~~A~~~ag~~~fI~-~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSa 639 (709)
T COG2274 566 NIALG-----NPEATDEEIIEAAQLAGAHEFIE-NLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSA 639 (709)
T ss_pred HHhcC-----CCCCCHHHHHHHHHHhCcHHHHH-hcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 99542 34445577888888888887766 55543 99999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
||+.+++.|.+.|.++. .|+|+|+||| +++++. .||+|++|++ +..++.++++
T Consensus 640 LD~~sE~~I~~~L~~~~----~~~T~I~IaH--Rl~ti~-~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 640 LDPETEAIILQNLLQIL----QGRTVIIIAH--RLSTIR-SADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred cCHhHHHHHHHHHHHHh----cCCeEEEEEc--cchHhh-hccEEEEccCCceeccCCHHHHH
Confidence 99999999999999984 6899999999 666565 6778888876 5555554444
No 29
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.7e-46 Score=371.79 Aligned_cols=215 Identities=14% Similarity=0.087 Sum_probs=178.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc--ceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS--GLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~--G~I~i~G~~i~~~~~~~ 142 (382)
.++++||+++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++ |+|.++|+++.+...
T Consensus 5 ~l~~~~l~~~~~~~--~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~-- 76 (362)
T TIGR03258 5 GIRIDHLRVAYGAN--T----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP-- 76 (362)
T ss_pred EEEEEEEEEEECCe--E----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--
Confidence 57889999999643 2 5999999999999999999999999999999999999 89 999999997643211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+ +.+||+||++.+|+++||++|+.+........ ....+++.++++.++|.+..+ ++|.+||||||||
T Consensus 77 ---------~~-r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~~~~LSgGq~QR 145 (362)
T TIGR03258 77 ---------HK-RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-HLPAQLSGGMQQR 145 (362)
T ss_pred ---------HH-CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-CChhhCCHHHHHH
Confidence 12 38999999999999999999997654221111 112345778899999987654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccC-CCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCN-ENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~-g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
|+|||||+.+|++||||| +||+..+..+.+.|+++. ++. |.|+|+||||++. +..+||+|++|++ +..+
T Consensus 146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~--~~~~g~til~vTHd~~e--a~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH--EELPELTILCVTHDQDD--ALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--HhCCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999 999999999999999983 443 8999999995555 9999999999987 4556
Q ss_pred cccceeeEE
Q 016817 295 EISGVYDIV 303 (382)
Q Consensus 295 ~~~~v~~~~ 303 (382)
++++++..+
T Consensus 222 ~~~~~~~~p 230 (362)
T TIGR03258 222 EPQALYDAP 230 (362)
T ss_pred CHHHHHhCc
Confidence 666676543
No 30
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-45 Score=352.79 Aligned_cols=224 Identities=14% Similarity=0.140 Sum_probs=188.6
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCccc
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNSSH 140 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~~~ 140 (382)
++++|++.+|......+ .+++||||+|++||++||||.|||||||+.+.|+|+++ + +|+|.|+|+++...+
T Consensus 2 L~v~nL~v~f~~~~g~v--~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~- 78 (316)
T COG0444 2 LEVKNLSVSFPTDAGVV--KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS- 78 (316)
T ss_pred ceEeeeEEEEecCCccE--EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC-
Confidence 67899999997654333 27999999999999999999999999999999999996 3 689999999865433
Q ss_pred ceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC---ccccccccccCcccccccc--ccccccCC
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG---VHHNQRCLRSDDCALMKND--AEIDDLKS 213 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~---~~~~~~~~~~l~~~~L~~~--~~~~~~~~ 213 (382)
..+...+|.+.|+|+|||+ .|.|.+||.+.+.+........ ....+++.++|+.+|+.+. ..+.||++
T Consensus 79 -----~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe 153 (316)
T COG0444 79 -----EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE 153 (316)
T ss_pred -----HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence 3345568888999999996 5788999999887765433211 1123567889999999853 44699999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||.||.||+.+|++||+|| +||...+.+|+++|+++. ++.|+|+|+||||+.+ +.++||+|.+|..
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~--~e~~~aiilITHDl~v--va~~aDri~VMYa 229 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ--REKGTALILITHDLGV--VAEIADRVAVMYA 229 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhcceEEEEEC
Confidence 99999999999999999999999999 999999999999999993 6789999999998888 9999999999987
Q ss_pred ---cccccccceeeE
Q 016817 291 ---LGVSEISGVYDI 302 (382)
Q Consensus 291 ---~~~~~~~~v~~~ 302 (382)
+..++..++|..
T Consensus 230 G~iVE~g~~~~i~~~ 244 (316)
T COG0444 230 GRIVEEGPVEEIFKN 244 (316)
T ss_pred cEEEEeCCHHHHhcC
Confidence 777888888854
No 31
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.5e-45 Score=341.10 Aligned_cols=208 Identities=17% Similarity=0.152 Sum_probs=169.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+++... +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----- 71 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQP----ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLR----- 71 (216)
T ss_pred CeEEEEEEEEecCCCee----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcC-----
Confidence 46789999999643222 5999999999999999999999999999999999998 8999999998654221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
......+|+ .++|+||++.+|+.+|+.+|+.+........ ....+++.++++.+++.+... +++.+|||||||||+
T Consensus 72 -~~~~~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~ 148 (216)
T TIGR00960 72 -GREIPFLRR-HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-ALPMQLSGGEQQRVA 148 (216)
T ss_pred -hhHHHHHHH-hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHH
Confidence 111222444 8999999999998899999997643211111 112345677899999986654 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||+||||++. +..+||+++++++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~vsH~~~~--~~~~~d~i~~l~~ 213 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEF---NRRGTTVLVATHDINL--VETYRHRTLTLSR 213 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 9999999999999999 99999999999999998 3358999999996665 8888999988864
No 32
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-46 Score=370.14 Aligned_cols=217 Identities=15% Similarity=0.093 Sum_probs=180.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.+.+.
T Consensus 17 ~~~l~l~~v~~~~~~~--~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~-- 88 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQ--H----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP-- 88 (377)
T ss_pred CceEEEEeEEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--
Confidence 4579999999999642 2 5999999999999999999999999999999999999 89999999997643221
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+ +.+||+||++.+|+++||.+|+.+....... .....+++.++++.+++.+..+ ++|.+||||||||
T Consensus 89 ---------~~-r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~~~~LSgGq~QR 157 (377)
T PRK11607 89 ---------YQ-RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-RKPHQLSGGQRQR 157 (377)
T ss_pred ---------HH-CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHH
Confidence 23 3899999999999999999999765321111 1112345678899999987654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+..+..+.+.|+++. ++.|.|+|+||||++. +..++|++++|++ +..++
T Consensus 158 VaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tii~vTHd~~e--a~~laDri~vl~~G~i~~~g~ 233 (377)
T PRK11607 158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL--ERVGVTCVMVTHDQEE--AMTMAGRIAIMNRGKFVQIGE 233 (377)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEcCCHHH--HHHhCCEEEEEeCCEEEEEcC
Confidence 999999999999999999 999999999999999883 4568999999995554 9999999999987 45566
Q ss_pred ccceeeEE
Q 016817 296 ISGVYDIV 303 (382)
Q Consensus 296 ~~~v~~~~ 303 (382)
+.+++..+
T Consensus 234 ~~~~~~~p 241 (377)
T PRK11607 234 PEEIYEHP 241 (377)
T ss_pred HHHHHhCC
Confidence 66666543
No 33
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-45 Score=325.57 Aligned_cols=228 Identities=14% Similarity=0.074 Sum_probs=199.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++||+|+|+... +|+++|++|++|.+++|+|||||||||||.++++|++ ++|+|+++|.++...+.
T Consensus 1 MI~i~nv~K~y~~~~------vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s---- 70 (252)
T COG4604 1 MITIENVSKSYGTKV------VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPS---- 70 (252)
T ss_pred CeeehhhhHhhCCEE------eeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCCh----
Confidence 688999999996543 6999999999999999999999999999999999999 99999999998765432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc---cccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV---HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
+.++ ++++.+-|++.....+||++-+.++++++..+. .++..+.++++.++|.+. .+++..+||||||||
T Consensus 71 --~~LA----k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l-~dryLd~LSGGQrQR 143 (252)
T COG4604 71 --KELA----KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL-SDRYLDELSGGQRQR 143 (252)
T ss_pred --HHHH----HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch-HHHhHHhcccchhhh
Confidence 3333 378889999888889999999998887765443 344668899999999965 569999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
.-||+.|+++.+.++||| +||.++...+++.|++++ .+.|+||++|-||+++ +..++|.|+-|++ +..|+
T Consensus 144 AfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla--~el~KtiviVlHDINf--AS~YsD~IVAlK~G~vv~~G~ 219 (252)
T COG4604 144 AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA--DELGKTIVVVLHDINF--ASCYSDHIVALKNGKVVKQGS 219 (252)
T ss_pred hhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHH--HHhCCeEEEEEecccH--HHhhhhheeeecCCEEEecCC
Confidence 999999999999999999 999999999999999995 6789999999999999 8889999999987 77889
Q ss_pred ccceeeEEEecc-ccCCCCc
Q 016817 296 ISGVYDIVCLTE-YGFPAEE 314 (382)
Q Consensus 296 ~~~v~~~~~l~~-~~~~~~~ 314 (382)
++++++.+.+++ |..+...
T Consensus 220 ~~eii~~~~L~eiydm~i~v 239 (252)
T COG4604 220 PDEIIQPEILSEIYDMDIPV 239 (252)
T ss_pred HHHhcCHHHHHHHhcCCcee
Confidence 999998888877 7766554
No 34
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-45 Score=326.56 Aligned_cols=209 Identities=14% Similarity=0.132 Sum_probs=181.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|+++.+++++|++.. ++++||||++++|+++||+|||||||||+||+|++++. ++|+|+++|.|+...+
T Consensus 1 Ml~v~~l~K~y~~~v-----~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p----- 70 (245)
T COG4555 1 MLEVTDLTKSYGSKV-----QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP----- 70 (245)
T ss_pred CeeeeehhhhccCHH-----hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-----
Confidence 578899999997632 27999999999999999999999999999999999998 8999999999764332
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..+|+ +||.+|.+..+|..+|++||+.+++..++ .....+.++.++.+.++|.+.++ ++..++|-||||||+
T Consensus 71 -----~~vrr-~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-rRv~~~S~G~kqkV~ 143 (245)
T COG4555 71 -----SFVRR-KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-RRVGEFSTGMKQKVA 143 (245)
T ss_pred -----HHHhh-hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-HHHhhhchhhHHHHH
Confidence 23565 99999988889999999999999886654 33334567788899999998765 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
|||||+++|++++||| |||..++..+.+.++++ ++.|++||++|| .+.+++.+||+|+++++ +..+..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~---k~egr~viFSSH--~m~EvealCDrvivlh~Gevv~~gs~ 217 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL---KNEGRAVIFSSH--IMQEVEALCDRVIVLHKGEVVLEGSI 217 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHh---hcCCcEEEEecc--cHHHHHHhhheEEEEecCcEEEcCCH
Confidence 9999999999999999 99999999999999998 667999999999 55559999999999987 444444
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1e-45 Score=366.74 Aligned_cols=215 Identities=16% Similarity=0.111 Sum_probs=178.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++. . +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.....
T Consensus 2 ~L~i~~l~~~~~~~--~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~---- 71 (353)
T PRK10851 2 SIEIANIKKSFGRT--Q----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA---- 71 (353)
T ss_pred EEEEEEEEEEeCCe--E----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----
Confidence 36789999999643 2 5999999999999999999999999999999999999 89999999997643210
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCc---cccccccccCccccccccccccccCCCcccee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGV---HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.+ +.+||+||++.+|+++|+.+|+.+...... ... ...+++.++++.++|.+..+ ++|.+||||||
T Consensus 72 -------~~-r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGq~ 142 (353)
T PRK10851 72 -------RD-RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-RYPAQLSGGQK 142 (353)
T ss_pred -------HH-CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHH
Confidence 22 389999999999999999999976532110 011 12346778899999986654 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccc
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGV 293 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~ 293 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|+|+||||++. +..+||+|++|++ +..
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~--~~~g~tii~vTHd~~e--a~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH--EELKFTSVFVTHDQEE--AMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999 999999999999999983 4458999999996555 9999999999987 455
Q ss_pred ccccceeeEE
Q 016817 294 SEISGVYDIV 303 (382)
Q Consensus 294 ~~~~~v~~~~ 303 (382)
+++++++..|
T Consensus 219 g~~~~i~~~p 228 (353)
T PRK10851 219 GTPDQVWREP 228 (353)
T ss_pred cCHHHHHhCc
Confidence 6666676543
No 36
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.2e-45 Score=362.85 Aligned_cols=205 Identities=16% Similarity=0.148 Sum_probs=170.1
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.... ......+|++.+|||||++.
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~------~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQS------PVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCC------HHHHHHHHhCcEEEEECCCc
Confidence 6999999999999999999999999999999999999 8999999999775432 22222344458999999999
Q ss_pred CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 166 GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+|+++||.+|+.+.....+.. ....+++.++++.+||..... ++|.+|||||||||+|||||+.+|++||||| +|
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999999999997654322111 112356778899999986654 9999999999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceeeE
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYDI 302 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~~ 302 (382)
|+.++..+++.|.++. ++.|+|||+||||++. +.++||+|++|++ +..+++++++..
T Consensus 161 D~~~r~~l~~~l~~l~--~~~~~Tii~vTHd~~e--a~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQ--ATLQKTIVFITHDLDE--AIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999983 4458999999996555 8999999999987 445566666543
No 37
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.2e-45 Score=358.09 Aligned_cols=214 Identities=14% Similarity=0.101 Sum_probs=177.2
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|++|+|++.. +|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++....
T Consensus 5 ~~~i~i~~l~k~~~~~~------~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~--- 75 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKL------VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA--- 75 (306)
T ss_pred CceEEEEeEEEEECCeE------EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch---
Confidence 45899999999996432 6999999999999999999999999999999999999 8999999999764211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...|+ .+||+||++.+++.+|+.||+.+....++.. ....+++.++++.+++.+..+ +++.+||||||||
T Consensus 76 -------~~~~~-~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr 146 (306)
T PRK13537 76 -------RHARQ-RVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGELSGGMKRR 146 (306)
T ss_pred -------HHHHh-cEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CchhhCCHHHHHH
Confidence 11343 8999999999999999999998655332211 111245667888999986654 8999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+++|++|+||| +||+.++..++++|+++ +++|+|||++||+++ ++.++||+|++|++ +..++
T Consensus 147 l~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l---~~~g~till~sH~l~--e~~~~~d~i~il~~G~i~~~g~ 221 (306)
T PRK13537 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL---LARGKTILLTTHFME--EAERLCDRLCVIEEGRKIAEGA 221 (306)
T ss_pred HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEECCCHH--HHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999 99999999999999998 346899999999555 49999999999987 44555
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
++++.
T Consensus 222 ~~~l~ 226 (306)
T PRK13537 222 PHALI 226 (306)
T ss_pred HHHHH
Confidence 54443
No 38
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.8e-45 Score=359.12 Aligned_cols=226 Identities=12% Similarity=0.047 Sum_probs=181.3
Q ss_pred cCchhHHHHHhhhcccCC---------eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 63 PDGLNELRHKFLSYRSGD---------FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~---------~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
.+++++++||+++|+.+. ... .+|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~--~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G 82 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTL--KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLG 82 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCce--EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECC
Confidence 356899999999996321 011 26999999999999999999999999999999999999 899999999
Q ss_pred ecCCCcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcCc---cccccccccCcccccccccc
Q 016817 133 TSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEGV---HHNQRCLRSDDCALMKNDAE 207 (382)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~---~~~~~~~~~l~~~~L~~~~~ 207 (382)
+++.+.. ..+...+|+ .++||||++ .+++.+|+.+|+.+....+.... ...+++.++++.+++.+...
T Consensus 83 ~~i~~~~------~~~~~~~r~-~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~ 155 (331)
T PRK15079 83 KDLLGMK------DDEWRAVRS-DIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155 (331)
T ss_pred EECCcCC------HHHHHHHhC-ceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh
Confidence 9765332 122333554 899999997 58888999999976432221111 12345667899999954344
Q ss_pred ccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
+++|++|||||+|||+|||||+.+|++||+|| +||+.++..++++|+++. ++.|.|+|+||||++. +.++||+
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~--~~~~~til~iTHdl~~--~~~~~dr 231 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ--REMGLSLIFIAHDLAV--VKHISDR 231 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhCCE
Confidence 59999999999999999999999999999999 999999999999999983 4458999999997766 9899999
Q ss_pred hhhhhh---cccccccceee
Q 016817 285 LKICEY---LGVSEISGVYD 301 (382)
Q Consensus 285 v~ll~~---~~~~~~~~v~~ 301 (382)
|++|.+ +..+++.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~~ 251 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVYH 251 (331)
T ss_pred EEEEECCEEEEEcCHHHHHc
Confidence 999976 55566666664
No 39
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-45 Score=365.07 Aligned_cols=214 Identities=14% Similarity=0.100 Sum_probs=176.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 3 ~l~i~~l~~~~~~~--~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~---- 72 (369)
T PRK11000 3 SVTLRNVTKAYGDV--V----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---- 72 (369)
T ss_pred EEEEEEEEEEeCCe--E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH----
Confidence 47889999999643 2 5999999999999999999999999999999999999 89999999997643211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.+||+||++.+|+++|+.+|+.+........ ....+++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 73 -------~~-~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-~~~~~LSgGq~QRva 143 (369)
T PRK11000 73 -------AE-RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVA 143 (369)
T ss_pred -------hH-CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHH
Confidence 12 37999999999999999999997653211111 112345778899999986654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|+|+||||++. +..+||++++|++ +..+++.
T Consensus 144 LAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~--~~~g~tvI~vTHd~~~--~~~~~d~i~vl~~G~i~~~g~~~ 219 (369)
T PRK11000 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH--KRLGRTMIYVTHDQVE--AMTLADKIVVLDAGRVAQVGKPL 219 (369)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HHhCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 4458999999996554 8899999999987 4445555
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 220 ~i~~~ 224 (369)
T PRK11000 220 ELYHY 224 (369)
T ss_pred HHHhC
Confidence 56543
No 40
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-45 Score=341.17 Aligned_cols=206 Identities=18% Similarity=0.108 Sum_probs=168.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 1 l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~------ 68 (235)
T cd03261 1 IELRGLTKSFGGR--T----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLS------ 68 (235)
T ss_pred CeEEEEEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccC------
Confidence 4578999999642 2 5999999999999999999999999999999999998 8999999998764321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..+...+++ .++|+||++.+|+.+|+.+|+.+...... .. ....+++.++++.+++.+... +++.+|||||||||+
T Consensus 69 ~~~~~~~~~-~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~ 146 (235)
T cd03261 69 EAELYRLRR-RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-LYPAELSGGMKKRVA 146 (235)
T ss_pred hhhHHHHhc-ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHH
Confidence 111122444 79999999999998999999976432111 01 111234667889999986654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +..+||++++|++
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tvi~vsH~~~~--~~~~~d~v~~l~~ 212 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLK--KELGLTSIMVTHDLDT--AFAIADRIAVLYD 212 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEecCHHH--HHHhcCEEEEEEC
Confidence 9999999999999999 999999999999999983 3358999999996655 8889999999976
No 41
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-44 Score=349.84 Aligned_cols=211 Identities=18% Similarity=0.201 Sum_probs=178.8
Q ss_pred hhHHHHHhhhccc-CCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRS-GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~-~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.++++|++++|+. .. +|+||||+|++|+++||+||||||||||+|+|+|++. ++|+|.++|.+....
T Consensus 4 ~i~~~~l~k~~~~~~~------~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~----- 72 (293)
T COG1131 4 VIEVRNLTKKYGGDKT------ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE----- 72 (293)
T ss_pred eeeecceEEEeCCCCE------EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-----
Confidence 5678999999973 33 6999999999999999999999999999999999999 899999999865421
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
...+++ ++||++|++.+++.+|++||+.+.+..++.. ....+++.++++.++|.+.. ++++.+||+|||||+
T Consensus 73 -----~~~~~~-~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl 145 (293)
T COG1131 73 -----PAKVRR-RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKVRTLSGGMKQRL 145 (293)
T ss_pred -----HHHHHh-heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHH
Confidence 122444 8999999999999999999999887655422 22346788999999999744 588999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+||+||+.+|++||||| ||||.++..++++|++++ ++.|+||+++|| .++++..+||+|+++++ +..+++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~--~~g~~tvlissH--~l~e~~~~~d~v~il~~G~~~~~g~~ 221 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELA--KEGGVTILLSTH--ILEEAEELCDRVIILNDGKIIAEGTP 221 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH--hCCCcEEEEeCC--cHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999 999999999999999993 333489999999 56669999999999987 444444
Q ss_pred cc
Q 016817 297 SG 298 (382)
Q Consensus 297 ~~ 298 (382)
.+
T Consensus 222 ~~ 223 (293)
T COG1131 222 EE 223 (293)
T ss_pred HH
Confidence 33
No 42
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.4e-44 Score=365.22 Aligned_cols=226 Identities=16% Similarity=0.100 Sum_probs=187.9
Q ss_pred cCchhHHHHHhhhcccCC-------eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 63 PDGLNELRHKFLSYRSGD-------FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~-------~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
.++.++++|+++.|...+ ..+ .+++||||++.+||++||||+||||||||.|+|+|+++ ++|+|.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~--~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEV--KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccce--eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 467889999999997421 122 37999999999999999999999999999999999999 89999999987
Q ss_pred CCCcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC--ccccccccccCccccccccccccc
Q 016817 135 SGNSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG--VHHNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 135 i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~--~~~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
.+.. ..+...+|+ .+-|+|||| .|.|.+||.+++.+........ ...++++.+++++++|.....++|
T Consensus 355 -~~~~------~~~~~~~r~-~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry 426 (539)
T COG1123 355 -LDLT------GGELRRLRR-RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426 (539)
T ss_pred -cccc------cchhhhhhh-heEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 2221 122333554 899999996 5889999999998765332211 222345778899999987545699
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
|++|||||||||+|||||+.+|++|++|| +||+..+..+.++|+++ +++.|.|.|+||||+.+ +.++||||++
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l--q~e~g~t~lfISHDl~v--V~~i~drv~v 502 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL--QEELGLTYLFISHDLAV--VRYIADRVAV 502 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH--HHHhCCEEEEEeCCHHH--HHhhCceEEE
Confidence 99999999999999999999999999999 99999999999999999 46789999999998877 9999999999
Q ss_pred hhh---cccccccceeeE
Q 016817 288 CEY---LGVSEISGVYDI 302 (382)
Q Consensus 288 l~~---~~~~~~~~v~~~ 302 (382)
|+. +..++.+.+|+.
T Consensus 503 m~~G~iVE~G~~~~v~~~ 520 (539)
T COG1123 503 MYDGRIVEEGPTEKVFEN 520 (539)
T ss_pred EECCeEEEeCCHHHHhcC
Confidence 987 777777778843
No 43
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=356.06 Aligned_cols=225 Identities=12% Similarity=0.067 Sum_probs=180.8
Q ss_pred CchhHHHHHhhhcccCCe------eeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 64 DGLNELRHKFLSYRSGDF------WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~------~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
+++|+++||++.|+.+.. .+ .+|+||||+|++||++||+|+||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~--~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~ 80 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLV--KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL 80 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCce--eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcC
Confidence 458999999999963210 11 26999999999999999999999999999999999999 8999999999765
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccC
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
..+ ..+...+|+ .++||||++ .+++.+++.+++.+...... ......+++.++++.+||.+...+++|+
T Consensus 81 ~~~------~~~~~~~r~-~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~ 153 (327)
T PRK11308 81 KAD------PEAQKLLRQ-KIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH 153 (327)
T ss_pred cCC------HHHHHHHhC-CEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc
Confidence 332 223333555 899999997 58888999999865432211 1111234577889999996433359999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||+|| +||+.++..++++|+++. ++.|.|+|+||||+.. +.++||+|++|.
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~--~~~g~til~iTHdl~~--~~~~adrv~vm~ 229 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ--QELGLSYVFISHDLSV--VEHIADEVMVMY 229 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 4468999999997666 888999999997
Q ss_pred h---cccccccceee
Q 016817 290 Y---LGVSEISGVYD 301 (382)
Q Consensus 290 ~---~~~~~~~~v~~ 301 (382)
+ +..++..+++.
T Consensus 230 ~G~ive~g~~~~~~~ 244 (327)
T PRK11308 230 LGRCVEKGTKEQIFN 244 (327)
T ss_pred CCEEEEECCHHHHhc
Confidence 6 55566666664
No 44
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.2e-45 Score=366.38 Aligned_cols=224 Identities=13% Similarity=0.040 Sum_probs=184.6
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|++. . +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.....
T Consensus 2 ~~L~~~nls~~y~~~--~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~--- 72 (402)
T PRK09536 2 PMIDVSDLSVEFGDT--T----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA--- 72 (402)
T ss_pred ceEEEeeEEEEECCE--E----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCH---
Confidence 368899999999643 2 5999999999999999999999999999999999999 89999999987653221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh---c--CccccccccccCccccccccccccccCCCccce
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS---E--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
..+++ ++||++|++.+++.+|+.+|+.+....+. . .....+++.++++.+++.+..+ +++.+|||||
T Consensus 73 ------~~~~~-~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-~~~~~LSgGe 144 (402)
T PRK09536 73 ------RAASR-RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-RPVTSLSGGE 144 (402)
T ss_pred ------HHHhc-ceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-CChhhCCHHH
Confidence 12343 89999999998888999999976432210 1 1123356788999999986654 9999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
||||+|||||+++|++||||| +||+.++..++++|+++. ++|+|||++|||++. +.++||+++++++ +.
T Consensus 145 rQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~---~~g~TIIivsHdl~~--~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV---DDGKTAVAAIHDLDL--AARYCDELVLLADGRVRA 219 (402)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH---hcCCEEEEEECCHHH--HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999 999999999999999983 358999999996666 9999999999987 55
Q ss_pred cccccceeeEEEecc-ccC
Q 016817 293 VSEISGVYDIVCLTE-YGF 310 (382)
Q Consensus 293 ~~~~~~v~~~~~l~~-~~~ 310 (382)
.++++++++.+.+.+ |+.
T Consensus 220 ~G~~~ev~~~~~l~~~~~~ 238 (402)
T PRK09536 220 AGPPADVLTADTLRAAFDA 238 (402)
T ss_pred ecCHHHHhCcHHHHHHhCC
Confidence 667777776665544 554
No 45
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=355.77 Aligned_cols=224 Identities=12% Similarity=0.050 Sum_probs=178.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-----ccceeeeEeecCCCccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-----~~G~I~i~G~~i~~~~~ 140 (382)
+++++|+++.|+.....+ .+|+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 3 ~L~v~~l~~~~~~~~~~~--~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~- 79 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPF--RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS- 79 (326)
T ss_pred eEEEeCeEEEECCCCccE--EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC-
Confidence 578999999997533211 16999999999999999999999999999999999986 4899999999765332
Q ss_pred ceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccc--cccccccCCC
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKN--DAEIDDLKSS 214 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~L 214 (382)
..+...+|++.++|+||++ .+++.+++.+++........ ......+++.++++.+||.+ ...+++|++|
T Consensus 80 -----~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~L 154 (326)
T PRK11022 80 -----EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQL 154 (326)
T ss_pred -----HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 2333334545799999997 47888898888765432221 11122356778899999964 2234899999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
||||||||+|||||+.+|++||+|| +||+.++..++++|+++. ++.|.|+|+||||+.. +.++||+|++|.+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~--~~~g~til~iTHdl~~--~~~~adri~vm~~G 230 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQ--QKENMALVLITHDLAL--VAEAAHKIIVMYAG 230 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECC
Confidence 9999999999999999999999999 999999999999999983 4468999999997666 8889999999987
Q ss_pred --cccccccceee
Q 016817 291 --LGVSEISGVYD 301 (382)
Q Consensus 291 --~~~~~~~~v~~ 301 (382)
+..+++.++++
T Consensus 231 ~ive~g~~~~~~~ 243 (326)
T PRK11022 231 QVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCHHHHhh
Confidence 55566666664
No 46
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=358.44 Aligned_cols=219 Identities=17% Similarity=0.164 Sum_probs=177.3
Q ss_pred hhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
||+++|++++|+.+ ... +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 1 mi~i~~l~~~y~~~~~~~~----il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~--- 73 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIH----ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALS--- 73 (343)
T ss_pred CEEEEeEEEEeCCCCCceE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCC---
Confidence 47789999999732 222 5999999999999999999999999999999999998 8999999999764322
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+...+|+ .+||+||++.+|+.+|+.+|+.+.....+.. ....+++.++++.+|+.+... +++.+||||||||
T Consensus 74 ---~~~~~~~~~-~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qR 148 (343)
T PRK11153 74 ---EKELRKARR-QIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-RYPAQLSGGQKQR 148 (343)
T ss_pred ---HHHHHHHhc-CEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHH
Confidence 122222444 8999999999999899999997653222111 112245677889999986654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..+++.|+++. ++.|+|||++|||++. +.++||++++|++ +..++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~--~~~g~tiilvtH~~~~--i~~~~d~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN--RELGLTIVLITHEMDV--VKRICDRVAVIDAGRLVEQGT 224 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999 999999999999999983 4458999999996655 8899999999987 34455
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
+.+++
T Consensus 225 ~~~~~ 229 (343)
T PRK11153 225 VSEVF 229 (343)
T ss_pred HHHHH
Confidence 55554
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.9e-44 Score=337.98 Aligned_cols=203 Identities=17% Similarity=0.137 Sum_probs=166.8
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----- 69 (236)
T cd03219 1 LEVRGLTKRFGGL--V----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP----- 69 (236)
T ss_pred CeeeeeEEEECCE--E----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCH-----
Confidence 3578999999642 2 5999999999999999999999999999999999998 89999999987643211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-----------ccccccccccCccccccccccccccCCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-----------VHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-----------~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
.. .++..++|+||++.+|+.+|+.+|+.+........ ....+.+.++++.+|+.+... +++.+|
T Consensus 70 -~~---~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~L 144 (236)
T cd03219 70 -HE---IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD-RPAGEL 144 (236)
T ss_pred -HH---HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhh-CChhhC
Confidence 11 11237999999999999899999997653211110 111235677888999986554 899999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ .+.|+|||++|||++. +..+||+++++++
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~vsH~~~~--~~~~~d~i~~l~~ 218 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL---RERGITVLLVEHDMDV--VMSLADRVTVLDQ 218 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEEEEEeC
Confidence 9999999999999999999999999 99999999999999998 3368999999996655 8889999999976
No 48
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.8e-44 Score=332.93 Aligned_cols=208 Identities=20% Similarity=0.142 Sum_probs=166.9
Q ss_pred hHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++|++++|+++. .. +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 1 l~~~~l~~~~~~~~~~~~----il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~---- 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQ----ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLS---- 72 (218)
T ss_pred CeEeeeEEEecCCCccee----EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcc----
Confidence 45789999996521 22 5999999999999999999999999999999999998 8999999998654221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
......++++.++|++|++.+|+.+|+.+|+.+........ ....+.+.++++.+|+.+... +++.+|||||||||
T Consensus 73 --~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv 149 (218)
T cd03255 73 --EKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-HYPSELSGGQQQRV 149 (218)
T ss_pred --hhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-cChhhcCHHHHHHH
Confidence 11111122247999999999998889999997643211111 112345677889999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +. +||++++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~-~~d~v~~l~~ 215 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELN--KEAGTTIVVVTHDPEL--AE-YADRIIELRD 215 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCeEEEEECCHHH--Hh-hhcEEEEeeC
Confidence 99999999999999999 999999999999999983 3358999999996655 76 8899888864
No 49
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-44 Score=333.23 Aligned_cols=201 Identities=16% Similarity=0.100 Sum_probs=166.4
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. + +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 1 l~~~~l~~~~~~~--~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~----- 69 (213)
T cd03259 1 LELKGLSKTYGSV--R----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP----- 69 (213)
T ss_pred CeeeeeEEEeCCe--e----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch-----
Confidence 4578999999642 2 5999999999999999999999999999999999998 89999999987643210
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.++|+||++.+++.+|+.+|+.+........ ....+++.++++.+++.+... +++.+|||||||||+|
T Consensus 70 ------~~-~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~l 141 (213)
T cd03259 70 ------ER-RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-RYPHELSGGQQQRVAL 141 (213)
T ss_pred ------hh-ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHH
Confidence 12 37999999998998899999997543211101 112245677888999986654 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +.++||+++++++
T Consensus 142 a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~~~d~v~~l~~ 206 (213)
T cd03259 142 ARALAREPSLLLLDEPLSALDAKLREELREELKELQ--RELGITTIYVTHDQEE--ALALADRIAVMNE 206 (213)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEecCHHH--HHHhcCEEEEEEC
Confidence 999999999999999 999999999999999983 3358999999996655 8889999998875
No 50
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.1e-44 Score=354.49 Aligned_cols=227 Identities=18% Similarity=0.134 Sum_probs=181.0
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNS 138 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~ 138 (382)
..++++++|+++.|..+...+ .+|+||||+|++||++||+|+||||||||+++|+|+++ + +|+|+++|+++...
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~--~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDV--TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred CCceEEEeCeEEEEecCCCCE--EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 456899999999996422111 16999999999999999999999999999999999998 5 99999999976533
Q ss_pred ccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc-C-ccccccccccCcccccccc--ccccccC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKND--AEIDDLK 212 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~--~~~~~~~ 212 (382)
+ ..+...+|++.|+||||++ .+++.+|+.+++.+....... . ....+++.++++.++|.+. ..+++|+
T Consensus 87 ~------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~ 160 (330)
T PRK09473 87 P------EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH 160 (330)
T ss_pred C------HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence 2 2333445545899999997 678889999988654322211 1 1112456778888998642 2248999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||+|||+|||||+.+|++||+|| +||+.++..++++|+++. ++.|.|+|+||||+.. +.++||++++|.
T Consensus 161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~--~~~g~til~iTHdl~~--~~~~~Dri~vm~ 236 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELK--REFNTAIIMITHDLGV--VAGICDKVLVMY 236 (330)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HHcCCEEEEEECCHHH--HHHhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 4458999999997666 888999999998
Q ss_pred h---cccccccceee
Q 016817 290 Y---LGVSEISGVYD 301 (382)
Q Consensus 290 ~---~~~~~~~~v~~ 301 (382)
+ +..+++++++.
T Consensus 237 ~G~ive~g~~~~i~~ 251 (330)
T PRK09473 237 AGRTMEYGNARDVFY 251 (330)
T ss_pred CCEEEEECCHHHHHh
Confidence 6 55666666664
No 51
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.8e-44 Score=356.09 Aligned_cols=214 Identities=15% Similarity=0.100 Sum_probs=176.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+|+++||+++|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 39 ~~~i~i~nl~k~y~~~~------~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~--- 109 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA------VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA--- 109 (340)
T ss_pred ceeEEEEEEEEEECCEE------EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch---
Confidence 35799999999996432 6999999999999999999999999999999999999 8999999999764211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...++ .+||+||++.+++.+|+.+|+.+....++.. ....+++.++++.++|.+..+ +++.+||||||||
T Consensus 110 -------~~~~~-~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~-~~~~~LS~G~kqr 180 (340)
T PRK13536 110 -------RLARA-RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-ARVSDLSGGMKRR 180 (340)
T ss_pred -------HHHhc-cEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhC-CChhhCCHHHHHH
Confidence 12343 8999999999999999999997654322111 112234567788999986654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+++|++||||| +|||.++..++++|+++ .+.|+|||++||+++ ++.++||+|+++++ +..++
T Consensus 181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l---~~~g~tilisSH~l~--e~~~~~d~i~il~~G~i~~~g~ 255 (340)
T PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL---LARGKTILLTTHFME--EAERLCDRLCVLEAGRKIAEGR 255 (340)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEECCCHH--HHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999 99999999999999998 336899999999555 49999999999987 44555
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
+.++.
T Consensus 256 ~~~l~ 260 (340)
T PRK13536 256 PHALI 260 (340)
T ss_pred HHHHH
Confidence 55543
No 52
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.6e-44 Score=331.31 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=168.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 1 ~l~~~~l~~~~~~~~-~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~---- 71 (214)
T TIGR02673 1 MIEFHNVSKAYPGGV-A----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRG---- 71 (214)
T ss_pred CEEEEeeeEEeCCCc-e----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCH----
Confidence 467899999995222 2 6999999999999999999999999999999999998 89999999987643211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.....+++ .++|++|++.+|+..|+.+|+.+....... .....+++.++++.+++.+... +.+.+|||||||||+
T Consensus 72 --~~~~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~ 147 (214)
T TIGR02673 72 --RQLPLLRR-RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-AFPEQLSGGEQQRVA 147 (214)
T ss_pred --HHHHHHHh-heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHH
Confidence 11122343 899999999999889999999764321111 1112345677889999986654 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|||+||||++. +..+||++++|++
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~tH~~~~--~~~~~d~i~~l~~ 212 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL---NKRGTTVIVATHDLSL--VDRVAHRVIILDD 212 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhcCEEEEecC
Confidence 9999999999999999 99999999999999997 3358999999996554 8888999988763
No 53
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.8e-44 Score=380.10 Aligned_cols=247 Identities=11% Similarity=0.038 Sum_probs=198.0
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhh-------hc-CcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA-------LI-APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
++..|+..++.+...+..+..+.+|+.++++.++.. .+ ...+.|+++||+|.|.++. + +|+|+||+|
T Consensus 299 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~-~----vL~~i~l~i 373 (588)
T PRK11174 299 EFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGK-T----LAGPLNFTL 373 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCC-e----eeeeeEEEE
Confidence 456899999999999999999999999999775421 11 0123599999997664432 2 599999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
++|+++||+||||||||||+++|+|+++++|+|.+||+++.+.+. ..+|+ +|+||+|++.+|+ .|++||
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~---------~~lr~-~i~~v~Q~~~LF~-~TI~eN 442 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDP---------ESWRK-HLSWVGQNPQLPH-GTLRDN 442 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCH---------HHHHh-heEEecCCCcCCC-cCHHHH
Confidence 999999999999999999999999999779999999998765432 22565 8999999999998 799999
Q ss_pred HHHHHhhhhcCccccccccccCccccccccccccc-----------cCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-----------LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+.+. .+...++++.++++.+++.+++. +. -..||||||||++|||||+++|+|||||| +|
T Consensus 443 I~~g-----~~~~~~eei~~al~~a~l~~~i~-~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaL 516 (588)
T PRK11174 443 VLLG-----NPDASDEQLQQALENAWVSEFLP-LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASL 516 (588)
T ss_pred hhcC-----CCCCCHHHHHHHHHHhCHHHHHH-hcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 9542 23345567788888888765443 32 23499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
|+++.+.+.+.|+++. +++|+|+||| +++.+. .+|+|+++++ +..|+.+++
T Consensus 517 D~~te~~i~~~l~~~~----~~~TvIiItH--rl~~i~-~aD~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 517 DAHSEQLVMQALNAAS----RRQTTLMVTH--QLEDLA-QWDQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred CHHHHHHHHHHHHHHh----CCCEEEEEec--ChHHHH-hCCEEEEEeCCeEeecCCHHHH
Confidence 9999999999999873 5799999999 555465 5788888876 444443333
No 54
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-44 Score=332.56 Aligned_cols=202 Identities=16% Similarity=0.086 Sum_probs=166.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~--~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~------- 67 (220)
T cd03265 1 IEVENLVKKYGDF--E----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE------- 67 (220)
T ss_pred CEEEEEEEEECCE--E----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-------
Confidence 4578999999642 2 5999999999999999999999999999999999998 899999999865321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
. ...++ .++|+||++.+++.+|+.+|+.+........ ....+++.++++.+++.+... +++.+|||||||||+|
T Consensus 68 ~---~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~l 142 (220)
T cd03265 68 P---REVRR-RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-RLVKTYSGGMRRRLEI 142 (220)
T ss_pred h---HHHhh-cEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHH
Confidence 0 11333 7999999999998899999997643221111 112345678899999986654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||++|||++. +..+||+++++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tvi~~tH~~~~--~~~~~d~i~~l~~ 207 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK--EEFGMTILLTTHYMEE--AEQLCDRVAIIDH 207 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 999999999999999 999999999999999983 3348999999996555 8889999999876
No 55
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.9e-44 Score=332.87 Aligned_cols=206 Identities=15% Similarity=0.105 Sum_probs=168.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++..... ++|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~--~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------ 72 (218)
T cd03266 1 MITADALTKRFRDVKKTV--QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE------ 72 (218)
T ss_pred CeEEEEEEEecCCCCccc--eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC------
Confidence 467899999997542100 15999999999999999999999999999999999998 899999999865321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
...+++ .++|+||++.+|+..|+.+|+.+........ ....+++.++++.+|+.+.+. +++.+|||||||||+
T Consensus 73 ----~~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ 146 (218)
T cd03266 73 ----PAEARR-RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-RRVGGFSTGMRQKVA 146 (218)
T ss_pred ----HHHHHh-hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-hhhhhcCHHHHHHHH
Confidence 112344 8999999999999899999997643221111 112345677899999986655 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|||+||||++. +..++|+++++++
T Consensus 147 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~tH~~~~--~~~~~d~i~~l~~ 211 (218)
T cd03266 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL---RALGKCILFSTHIMQE--VERLCDRVVVLHR 211 (218)
T ss_pred HHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 9999999999999999 99999999999999998 3358999999996554 8889999998875
No 56
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.9e-44 Score=377.09 Aligned_cols=249 Identities=18% Similarity=0.130 Sum_probs=205.5
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++..|+.+++.+...+..+..+.+|+.++++.++... ....+.|+++||+|+|+++. ++|+|+||+++
T Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~-----~vl~~is~~i~ 353 (567)
T COG1132 279 LRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKK-----PVLKDISFSIE 353 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCC-----ccccCceEEEc
Confidence 35677999999999999999999999999999866311 11234599999999998532 26999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||.+||+||||||||||+++|+|+++ ++|+|.+||+++.+... ..+|+ +|++|+||+.+|. .|+++|
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~---------~~lr~-~I~~V~Qd~~LF~-~TI~~N 422 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL---------DSLRK-RIGIVSQDPLLFS-GTIREN 422 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCH---------HHHHH-hccEEcccceeec-ccHHHH
Confidence 999999999999999999999999999 79999999998875542 23665 9999999999998 899999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+.++ .....++++.++++.+++.+++. +.| ..||||||||++||||++++|+||+||| +|
T Consensus 423 I~~g-----~~~at~eei~~a~k~a~~~d~I~-~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSal 496 (567)
T COG1132 423 IALG-----RPDATDEEIEEALKLANAHEFIA-NLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSAL 496 (567)
T ss_pred HhcC-----CCCCCHHHHHHHHHHhChHHHHH-hCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence 9643 23345567778888777665544 323 3499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|+.++..+++.+.++. +++|+|+|+| +++++.. +|+|+++++ +..|..++.+
T Consensus 497 D~~tE~~I~~~l~~l~----~~rT~iiIaH--Rlsti~~-aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 497 DTETEALIQDALKKLL----KGRTTLIIAH--RLSTIKN-ADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred CHHhHHHHHHHHHHHh----cCCEEEEEec--cHhHHHh-CCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999872 5689999999 7777887 888888876 5556555544
No 57
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-43 Score=313.90 Aligned_cols=201 Identities=14% Similarity=0.143 Sum_probs=172.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
++.+++++.+|.+.... +|+|+|++|.+||+++++||||||||||+|+++|+.+ ..|+|.+||+.+....
T Consensus 3 ~l~~~~~sl~y~g~~~~----~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg----- 73 (259)
T COG4525 3 MLNVSHLSLSYEGKPRS----ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG----- 73 (259)
T ss_pred eeehhheEEecCCcchh----hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----
Confidence 56788999999765422 6999999999999999999999999999999999999 8999999999765332
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..-|.|||+..|+|++++.+|+++.....+ .+....+++.+.+..+||.+.- ++++.+|||||||||.
T Consensus 74 ----------aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-~~~i~qLSGGmrQRvG 142 (259)
T COG4525 74 ----------AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-HKYIWQLSGGMRQRVG 142 (259)
T ss_pred ----------ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-ccceEeecchHHHHHH
Confidence 145899999999999999999988754433 2222345677788999999765 5999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++|+||| +||.-++++++++|.+++ ++.|+.+++||| +++++.-.++++++|..
T Consensus 143 iARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw--~~tgk~~lliTH--~ieEAlflatrLvvlsp 208 (259)
T COG4525 143 IARALAVEPQLLLLDEPFGALDALTREQMQELLLDLW--QETGKQVLLITH--DIEEALFLATRLVVLSP 208 (259)
T ss_pred HHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHH--HHhCCeEEEEec--cHHHHHhhhheeEEecC
Confidence 9999999999999999 999999999999999995 778999999999 55558888999998854
No 58
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-44 Score=334.38 Aligned_cols=209 Identities=18% Similarity=0.155 Sum_probs=169.7
Q ss_pred hhHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+|+++|++++|++.. .+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 ~i~~~~l~~~~~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--- 73 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVT----ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS--- 73 (233)
T ss_pred CeEEecceEEccCCCCcee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC---
Confidence 467899999996431 12 5999999999999999999999999999999999999 8999999998764221
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.......++ .++|++|++.+|+.+|+.+|+.+....... .....+.+.++++.+++.+... +++.+||||||||
T Consensus 74 ---~~~~~~~~~-~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr 148 (233)
T cd03258 74 ---GKELRKARR-RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-AYPAQLSGGQKQR 148 (233)
T ss_pred ---HHHHHHHHh-heEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-cChhhCCHHHHHH
Confidence 111112343 799999999999889999999764321111 1111235677889999986654 8999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||++|||++. +..+||+++++++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tvii~sH~~~~--~~~~~d~i~~l~~ 216 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDIN--RELGLTIVLITHEMEV--VKRICDRVAVMEK 216 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 999999999999999983 3348999999996555 8889999999876
No 59
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.5e-44 Score=362.68 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=192.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c----cceeeeEeecCCCcc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R----SGLVLFAQTSSGNSS 139 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~----~G~I~i~G~~i~~~~ 139 (382)
++++++|+++.|......+ .+++||||+|.+||++||||.|||||||+.++|.|+++ . +|+|.++|+++...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~--~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l- 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRV--PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL- 80 (539)
T ss_pred ceEEEeceEEEEecCCcce--eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC-
Confidence 4889999999997654333 27999999999999999999999999999999999998 5 79999999976533
Q ss_pred cceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc--CccccccccccCcccccccccc-ccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAE-IDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~-~~~~~~L 214 (382)
.....+.+|.+.|+|+||++ .|.|-+|+.+.+.+....... .....+++.++++++||.+... ++||++|
T Consensus 81 -----~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheL 155 (539)
T COG1123 81 -----SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQL 155 (539)
T ss_pred -----CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCccc
Confidence 33445667878999999996 366778999988876544321 2223456778899999986544 3599999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
||||||||.||+||+.+|++||+|| +||+.++.+|+++|+++ +++.|+++|+||||+.+ +.++||+|++|.+
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l--~~e~g~a~l~ITHDl~V--va~~aDrv~Vm~~G 231 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL--QRELGMAVLFITHDLGV--VAELADRVVVMYKG 231 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHH--HHHcCcEEEEEcCCHHH--HHHhcCeEEEEECC
Confidence 9999999999999999999999999 99999999999999999 37789999999998888 9999999999987
Q ss_pred --cccccccceeeEE
Q 016817 291 --LGVSEISGVYDIV 303 (382)
Q Consensus 291 --~~~~~~~~v~~~~ 303 (382)
+..++++++|+.+
T Consensus 232 ~iVE~G~~~~i~~~p 246 (539)
T COG1123 232 EIVETGPTEEILSNP 246 (539)
T ss_pred EEEEecCHHHHHhcc
Confidence 7888888898654
No 60
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.4e-44 Score=348.44 Aligned_cols=213 Identities=16% Similarity=0.084 Sum_probs=173.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+++|++++|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 3 ~~i~~~~l~~~~~~~~------~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----- 71 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKV------VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR----- 71 (303)
T ss_pred cEEEEEeEEEEeCCeE------EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-----
Confidence 4688999999996432 5999999999999999999999999999999999998 899999999865321
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
....|+ .+||++|++.+++.+|+.+|+.+.....+.. ....+++.++++.+++.+... +++.+|||||||||
T Consensus 72 -----~~~~~~-~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~-~~~~~LSgG~~qrv 144 (303)
T TIGR01288 72 -----ARLARV-AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-VRVALLSGGMKRRL 144 (303)
T ss_pred -----HHHHhh-cEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-CchhhCCHHHHHHH
Confidence 112343 8999999999998899999997543222111 111234566788899986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +..+||+++++++ +..+++
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~~g~til~~sH~~~~--~~~~~d~i~~l~~G~i~~~g~~ 219 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL---LARGKTILLTTHFMEE--AERLCDRLCVLESGRKIAEGRP 219 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEECCCHHH--HHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999 99999999999999998 3368999999996555 8899999999976 344444
Q ss_pred ccee
Q 016817 297 SGVY 300 (382)
Q Consensus 297 ~~v~ 300 (382)
.++.
T Consensus 220 ~~~~ 223 (303)
T TIGR01288 220 HALI 223 (303)
T ss_pred HHHH
Confidence 4443
No 61
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-44 Score=344.94 Aligned_cols=223 Identities=14% Similarity=0.130 Sum_probs=174.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++|++++|+.+... ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.....
T Consensus 1 mi~~~~v~~~y~~~~~~-~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~---- 75 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPF-ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK---- 75 (288)
T ss_pred CEEEEEEEEEeCCCCcc-cccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccc----
Confidence 57889999999643210 0016999999999999999999999999999999999999 89999999997642110
Q ss_pred hhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
......+|+ .+||+||++ .+|+ .|+.+|+.+....++. .....+++.++++.++|.+.+.++.|.+||||||||
T Consensus 76 -~~~~~~~~~-~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr 152 (288)
T PRK13643 76 -QKEIKPVRK-KVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR 152 (288)
T ss_pred -cccHHHHHh-hEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH
Confidence 011222444 899999987 5666 6999999765322211 111234567788899996433359999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||++|||++. +..+||+|++|++ +..++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l---~~~g~til~vtHd~~~--~~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI---HQSGQTVVLVTHLMDD--VADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999 99999999999999998 3358999999997665 8889999999987 45566
Q ss_pred ccceee
Q 016817 296 ISGVYD 301 (382)
Q Consensus 296 ~~~v~~ 301 (382)
+.+++.
T Consensus 228 ~~~~~~ 233 (288)
T PRK13643 228 PSDVFQ 233 (288)
T ss_pred HHHHHc
Confidence 666664
No 62
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.7e-44 Score=333.87 Aligned_cols=203 Identities=13% Similarity=0.097 Sum_probs=166.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++.. +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|+++|+++.....
T Consensus 1 l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----- 69 (232)
T cd03218 1 LRAENLSKRYGKRK------VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPM----- 69 (232)
T ss_pred CeEEEEEEEeCCEE------eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCH-----
Confidence 45789999996432 5999999999999999999999999999999999999 89999999986542211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.. ..+ +.++|+||++.+|+.+|+.+|+.......... ....+.+.++++.+++.+... +.+.+|||||||||+|
T Consensus 70 -~~--~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~l 144 (232)
T cd03218 70 -HK--RAR-LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK-SKASSLSGGERRRVEI 144 (232)
T ss_pred -hH--HHh-ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHH
Confidence 11 112 37999999999999899999997643211111 111234567888899986554 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++ .+.|+|||++|||++. +..+||+++++++
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~---~~~~~tii~~sH~~~~--~~~~~d~i~~l~~ 208 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL---KDRGIGVLITDHNVRE--TLSITDRAYIIYE 208 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 99999999999999998 3358999999996655 8889999999976
No 63
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-44 Score=321.33 Aligned_cols=222 Identities=13% Similarity=0.086 Sum_probs=189.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+++.++|+.|+|+... ++++|||+|++||++||+|||||||||.+.++.|+.+ ++|+|++||.|++..+.
T Consensus 3 ~~L~a~~l~K~y~kr~------Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm--- 73 (243)
T COG1137 3 STLVAENLAKSYKKRK------VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM--- 73 (243)
T ss_pred cEEEehhhhHhhCCee------eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCCh---
Confidence 3678899999996544 6999999999999999999999999999999999999 99999999998865432
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-c--cccccccccCccccccccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-V--HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~--~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+ .|. .|||++|++..|-.+||.+|+..+....... . ..+.+..++++.+++.+. .+++..+||||||+
T Consensus 74 ---~~R--Arl-GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-r~~~a~sLSGGERR 146 (243)
T COG1137 74 ---HKR--ARL-GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-RDSKAYSLSGGERR 146 (243)
T ss_pred ---HHH--hhc-CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-hcCcccccccchHH
Confidence 222 333 8999999999999999999998765433211 1 112335678999999865 45899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
|+.|||||+.+|+++|||| ++||.....|.++++.| +++|..|+++-| +..+...+|||.+++.. +..|
T Consensus 147 R~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L---~~rgiGvLITDH--NVREtL~i~dRaYIi~~G~vla~G 221 (243)
T COG1137 147 RVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL---KDRGIGVLITDH--NVRETLDICDRAYIISDGKVLAEG 221 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHH---HhCCceEEEccc--cHHHHHhhhheEEEEecCeEEecC
Confidence 9999999999999999999 99999999999999999 668999999999 66668899999999987 7788
Q ss_pred cccceeeEEEecc
Q 016817 295 EISGVYDIVCLTE 307 (382)
Q Consensus 295 ~~~~v~~~~~l~~ 307 (382)
.++++.+.|.+++
T Consensus 222 ~p~ei~~n~~Vr~ 234 (243)
T COG1137 222 SPEEIVNNEDVRR 234 (243)
T ss_pred CHHHHhcChhhhh
Confidence 8999998887766
No 64
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-44 Score=336.15 Aligned_cols=202 Identities=16% Similarity=0.116 Sum_probs=166.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 2 ~l~~~~l~~~~~~~--~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---- 71 (239)
T cd03296 2 SIEVRNVSKRFGDF--V----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV---- 71 (239)
T ss_pred EEEEEeEEEEECCE--E----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc----
Confidence 36789999999642 2 5999999999999999999999999999999999998 89999999987642211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc----Cc-cccccccccCccccccccccccccCCCcccee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE----GV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~----~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.+ +.++|++|++.+|+..|+.+|+.+....... .. ...+.+.++++.+++.+... +++.+||||||
T Consensus 72 -------~~-~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~ 142 (239)
T cd03296 72 -------QE-RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-RYPAQLSGGQR 142 (239)
T ss_pred -------cc-cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHH
Confidence 12 3799999999999889999999754321111 00 11234567788999986554 89999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||++|||++. +..+||++++|++
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tvii~sH~~~~--~~~~~d~i~~l~~ 212 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH--DELHVTTVFVTHDQEE--ALEVADRVVVMNK 212 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999 999999999999999983 3348999999996655 8888999999976
No 65
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.2e-43 Score=333.82 Aligned_cols=208 Identities=16% Similarity=0.142 Sum_probs=168.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 1 ~l~~~~l~~~~~~~-~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----- 70 (243)
T TIGR02315 1 MLEVENLSKVYPNG-KQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR----- 70 (243)
T ss_pred CeEEEeeeeecCCC-cc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCC-----
Confidence 46789999999622 22 6999999999999999999999999999999999998 8999999998654221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh--------h-cCccccccccccCccccccccccccccCCCc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM--------S-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~--------~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
......+++ .++|+||++.+|+.+|+.+|+.+..... . ......+++.++++.+++.+... +++.+||
T Consensus 71 -~~~~~~~~~-~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS 147 (243)
T TIGR02315 71 -GKKLRKLRR-RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-QRADQLS 147 (243)
T ss_pred -HHHHHHHHh-heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-CCcccCC
Confidence 111122344 8999999999998899999996432110 0 01112245667888999986554 8999999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +.++||+++++++
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tiii~tH~~~~--~~~~~d~v~~l~~ 221 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRIN--KEDGITVIINLHQVDL--AKKYADRIVGLKA 221 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhcCeEEEEEC
Confidence 999999999999999999999999 999999999999999983 3358999999996665 8889999999976
No 66
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=8.9e-44 Score=328.44 Aligned_cols=201 Identities=11% Similarity=0.086 Sum_probs=165.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 i~~~~l~~~~~~~~------~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~----- 69 (213)
T cd03301 1 VELENVTKRFGNVT------ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP----- 69 (213)
T ss_pred CEEEeeEEEECCee------eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-----
Confidence 35789999996432 5999999999999999999999999999999999998 89999999987642211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.++|++|++.+|+..|+.+|+......... .....+++.++++.+|+.+... +++.+||||||||++|
T Consensus 70 ------~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~l 141 (213)
T cd03301 70 ------KD-RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-RKPKQLSGGQRQRVAL 141 (213)
T ss_pred ------cc-ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-CChhhCCHHHHHHHHH
Confidence 12 3799999999999889999999764321111 1111235667788999986654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 142 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tvi~~sH~~~~--~~~~~d~i~~l~~ 206 (213)
T cd03301 142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQ--QRLGTTTIYVTHDQVE--AMTMADRIAVMND 206 (213)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhcCeEEEEEC
Confidence 999999999999999 999999999999999983 3358999999996655 8888999988865
No 67
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=349.05 Aligned_cols=224 Identities=16% Similarity=0.160 Sum_probs=176.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-----ccceeeeEeecCCCccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-----~~G~I~i~G~~i~~~~~ 140 (382)
+++++|++++|..+.... .+|+||||+|.+||+++|+|+||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 3 ~L~v~~l~~~y~~~~~~~--~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~- 79 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWV--KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS- 79 (330)
T ss_pred eEEEeeeEEEEeCCCCCE--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC-
Confidence 688999999995421111 16999999999999999999999999999999999984 5899999999764322
Q ss_pred ceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhh-cC------ccccccccccCcccccccc--cccc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMS-EG------VHHNQRCLRSDDCALMKND--AEID 209 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~-~~------~~~~~~~~~~l~~~~L~~~--~~~~ 209 (382)
..+...+|++.++||||++. +++.+|+.+++.+...... .+ ....+++.++++.+||.+. ..++
T Consensus 80 -----~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 80 -----PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred -----HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 22333344457999999975 6778899999865321111 11 0112456788999999742 2358
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
+|.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||+.. +.++||+++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~--~~~g~tii~itHdl~~--v~~~~dri~ 230 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLN--QNNNTTILLISHDLQM--LSQWADKIN 230 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HhcCCEEEEEECCHHH--HHHhCCEEE
Confidence 999999999999999999999999999999 999999999999999983 4458999999997666 989999999
Q ss_pred hhhh---cccccccceee
Q 016817 287 ICEY---LGVSEISGVYD 301 (382)
Q Consensus 287 ll~~---~~~~~~~~v~~ 301 (382)
+|++ +..+++++++.
T Consensus 231 vm~~G~ive~g~~~~i~~ 248 (330)
T PRK15093 231 VLYCGQTVETAPSKELVT 248 (330)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 9987 45555555653
No 68
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.3e-43 Score=327.37 Aligned_cols=206 Identities=17% Similarity=0.124 Sum_probs=167.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++. . +|+|+||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 1 l~~~~l~~~~~~~~-~----~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~------ 69 (214)
T cd03292 1 IEFINVTKTYPNGT-A----ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLR------ 69 (214)
T ss_pred CEEEEEEEEeCCCc-e----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCC------
Confidence 35789999996432 2 5999999999999999999999999999999999998 8999999998764321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
......+|+ .++|++|++.+|+..|+.+|+.+....... .....+++.++++.+++.+... +++.+||||||||++|
T Consensus 70 ~~~~~~~~~-~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~l 147 (214)
T cd03292 70 GRAIPYLRR-KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-ALPAELSGGEQQRVAI 147 (214)
T ss_pred HHHHHHHHH-heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHH
Confidence 111222444 899999999999989999999764322111 1112245667888999986554 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +..+||++++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~---~~~~~tiiivtH~~~~--~~~~~d~i~~l~~ 211 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI---NKAGTTVVVATHAKEL--VDTTRHRVIALER 211 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 999999999999999 99999999999999998 3358999999996655 8888999888764
No 69
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.6e-44 Score=382.11 Aligned_cols=246 Identities=16% Similarity=0.133 Sum_probs=200.7
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh----c--CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL----I--APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++..|+.+++.....++.+..+.+|+.++++.++... . ...+.|+++||+|+|++...+ +|+|+||+|+
T Consensus 402 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~----vL~~isl~i~ 477 (686)
T TIGR03797 402 GSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPL----ILDDVSLQIE 477 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCCcc----ceeeeEEEEC
Confidence 36788999999999999999999999999987754311 0 112468999999999654333 5999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||.+||+||||||||||+|+|+|+++ ++|+|.+||+++.+... ..+|+ ++|||+|++.+|+ .|++||
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~---------~~lr~-~i~~v~Q~~~lf~-gTI~eN 546 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV---------QAVRR-QLGVVLQNGRLMS-GSIFEN 546 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH---------HHHHh-ccEEEccCCccCc-ccHHHH
Confidence 999999999999999999999999999 89999999998765432 23665 8999999999998 799999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+... .+ .+++++.++++.+++.+.+. +.| ..||||||||++|||||+++|++||||| +|
T Consensus 547 i~~~-----~~-~~~e~i~~al~~a~l~~~i~-~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~L 619 (686)
T TIGR03797 547 IAGG-----AP-LTLDEAWEAARMAGLAEDIR-AMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSAL 619 (686)
T ss_pred HhcC-----CC-CCHHHHHHHHHHcCcHHHHH-hccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 9642 22 45567788888888876544 333 3599999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
|+.+++.+.+.|+++ ++|+|+||| +++.+. .+|+|++|++ +..|+.+++
T Consensus 620 D~~te~~i~~~L~~~------~~T~IiItH--r~~~i~-~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 620 DNRTQAIVSESLERL------KVTRIVIAH--RLSTIR-NADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred CHHHHHHHHHHHHHh------CCeEEEEec--ChHHHH-cCCEEEEEECCEEEEECCHHHH
Confidence 999999999999875 479999999 554465 4888888876 444444443
No 70
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=331.47 Aligned_cols=210 Identities=19% Similarity=0.147 Sum_probs=168.6
Q ss_pred chhHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 65 GLNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
++++++||++.|+.+. .+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~-- 77 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTD----VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLS-- 77 (233)
T ss_pred ceEEEEeEEEEcCCCCccee----eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--
Confidence 4789999999996432 22 5999999999999999999999999999999999998 8999999998764322
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+....+++.++|+||++.+|+.+|+.+|+.+....... .....+++.++++.+|+.+... +.+.+|||||||
T Consensus 78 ----~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~q 152 (233)
T PRK11629 78 ----SAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-HRPSELSGGERQ 152 (233)
T ss_pred ----HHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHH
Confidence 1122223323799999999999888999999764321111 1112345677899999986654 899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +..+| ++++|++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tvii~sH~~~~--~~~~~-~~~~l~~ 220 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN--RLQGTAFLVVTHDLQL--AKRMS-RQLEMRD 220 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHhhC-EEEEEEC
Confidence 9999999999999999999 999999999999999983 3358999999996655 77765 6666655
No 71
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.6e-43 Score=326.28 Aligned_cols=203 Identities=21% Similarity=0.173 Sum_probs=162.8
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
+++|++++|++.... +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------- 69 (211)
T cd03225 1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS------- 69 (211)
T ss_pred CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC-------
Confidence 367899999652222 5999999999999999999999999999999999998 8999999998654221
Q ss_pred hhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 147 EEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
...+++ .++|++|++. .++..|+.+|+.+........ ....+.+.++++.+++.+... +++.+|||||||||+|
T Consensus 70 --~~~~~~-~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~l 145 (211)
T cd03225 70 --LKELRR-KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-RSPFTLSGGQKQRVAI 145 (211)
T ss_pred --HHHHHh-hceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHH
Confidence 111343 7999999974 355689999996543211101 111235667888899986554 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +..+||+++++++
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~---~~~~~tvi~~sH~~~~--~~~~~d~i~~l~~ 209 (211)
T cd03225 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL---KAEGKTIIIVTHDLDL--LLELADRVIVLED 209 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 999999999999999 99999999999999998 3348999999996655 8888999988753
No 72
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.3e-43 Score=329.22 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=163.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|++. + +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----- 69 (222)
T cd03224 1 LEVENLNAGYGKS--Q----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP----- 69 (222)
T ss_pred CEEeeEEeecCCe--e----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCH-----
Confidence 4578999999643 2 5999999999999999999999999999999999999 89999999986543211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-cccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-LMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ ..+ +.++|+||++.+|+.+|+.+|+.+...... .....+.+.++++.+ ++.+... +++.+|||||||||+|
T Consensus 70 -~~--~~~-~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrv~l 143 (222)
T cd03224 70 -HE--RAR-AGIGYVPEGRRIFPELTVEENLLLGAYARR-RAKRKARLERVYELFPRLKERRK-QLAGTLSGGEQQMLAI 143 (222)
T ss_pred -HH--HHh-cCeEEeccccccCCCCcHHHHHHHHhhhcC-chhHHHHHHHHHHHHHhhhhhhh-CchhhCCHHHHHHHHH
Confidence 11 122 379999999999998999999976432211 111123345567777 4665544 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+++.|+++ .+.|.|||++|||++. +.++||+++++++
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 207 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL---RDEGVTILLVEQNARF--ALEIADRAYVLER 207 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhccEEEEeeC
Confidence 999999999999999 99999999999999998 3368999999996655 8889999999876
No 73
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.3e-43 Score=352.06 Aligned_cols=221 Identities=15% Similarity=0.059 Sum_probs=175.3
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
-.++.++|+... +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|++... ........
T Consensus 27 ~~~~~~~~g~~~------~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~--~i~~~~~~ 98 (382)
T TIGR03415 27 REEILDETGLVV------GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSI--DVANCDAA 98 (382)
T ss_pred HHHHHHhhCCEE------EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEeccc--ccccCCHH
Confidence 346677785432 6999999999999999999999999999999999999 89999999963100 00011223
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecceee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAM 226 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAr 226 (382)
....+|++.++|+||++.+|+++|+.+|+.+.....+. .....+++.++++.+||.+.. +++|.+|||||||||+|||
T Consensus 99 ~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-~~~~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 99 TLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-DKKPGELSGGMQQRVGLAR 177 (382)
T ss_pred HHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHH
Confidence 33345545899999999999999999999765322111 111234567889999998665 4999999999999999999
Q ss_pred eehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 227 VVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 227 aL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
||+.+|+|||||| +||+..+..+++.|.++. ++.++|||+||||++. +.++||++++|++ +..+++++++
T Consensus 178 ALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~--~~~~~TII~iTHdl~e--~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 178 AFAMDADILLMDEPFSALDPLIRTQLQDELLELQ--AKLNKTIIFVSHDLDE--ALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999 999999999999999983 4458999999996655 9999999999987 4556666666
Q ss_pred eE
Q 016817 301 DI 302 (382)
Q Consensus 301 ~~ 302 (382)
..
T Consensus 254 ~~ 255 (382)
T TIGR03415 254 LN 255 (382)
T ss_pred hC
Confidence 43
No 74
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.8e-43 Score=380.36 Aligned_cols=264 Identities=17% Similarity=0.149 Sum_probs=204.1
Q ss_pred CCCCCCceEEeeccccchhhhhh---hccCCCCccccchhHHHHHHhhhh--h-------hcCcCchhHHHHHhhhcccC
Q 016817 12 EYDPSGLVYCWWRSAAKFDECVK---LKLDLPNVSTLTPRLRVLREMERL--A-------LIAPDGLNELRHKFLSYRSG 79 (382)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~i~i~nvs~~y~~~ 79 (382)
.|.+-....|.+.+.--=..++. -...+..+.++..++.++++-.+. + .....+.|+++||+|+|+..
T Consensus 284 ~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsR 363 (1228)
T KOG0055|consen 284 GYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSR 363 (1228)
T ss_pred CCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCC
Confidence 34444555555544332223332 233444677888888888776653 1 11235689999999999876
Q ss_pred CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccc
Q 016817 80 DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158 (382)
Q Consensus 80 ~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig 158 (382)
... ++|+|+||+|++|+++||||||||||||++++|.|+++ ++|+|.+||.|+.+.... .+|+ +||
T Consensus 364 pdv---~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~---------~lr~-~ig 430 (1228)
T KOG0055|consen 364 PDV---KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLK---------WLRS-QIG 430 (1228)
T ss_pred Ccc---hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchH---------HHHh-hcC
Confidence 522 27999999999999999999999999999999999999 899999999988654432 2666 999
Q ss_pred eeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeee
Q 016817 159 FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMV 227 (382)
Q Consensus 159 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAra 227 (382)
+|+|+|.||. .|++|||.+ +......+++.++.++++..+++. +.| -+||||||||||||||
T Consensus 431 lV~QePvlF~-~tI~eNI~~-----G~~dat~~~i~~a~k~ana~~fi~-~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 431 LVSQEPVLFA-TTIRENIRY-----GKPDATREEIEEAAKAANAHDFIL-KLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred eeeechhhhc-ccHHHHHhc-----CCCcccHHHHHHHHHHccHHHHHH-hhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 9999999997 899999954 334455667777777776655443 333 2499999999999999
Q ss_pred ehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 228 VSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 228 L~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
|+++|+|||||| +||+++++.++++|.+.. .|+|.|+|+| +++++++ +|+|+++++ +..|..++++.
T Consensus 504 lv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~----~grTTivVaH--RLStIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAESERVVQEALDKAS----KGRTTIVVAH--RLSTIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHhCCCEEEecCcccccCHHHHHHHHHHHHHhh----cCCeEEEEee--ehhhhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999 999999999999999873 6899999999 8888987 888888877 66666666654
Q ss_pred E
Q 016817 302 I 302 (382)
Q Consensus 302 ~ 302 (382)
.
T Consensus 577 ~ 577 (1228)
T KOG0055|consen 577 L 577 (1228)
T ss_pred c
Confidence 3
No 75
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.2e-43 Score=329.04 Aligned_cols=202 Identities=16% Similarity=0.148 Sum_probs=166.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++||++.|+++..+ +|+|+||++++||+++|+||||||||||+++|+|+++ ++|+|+++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------- 69 (220)
T cd03263 1 LQIRNLTKTYKKGTKP----AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD------- 69 (220)
T ss_pred CEEEeeEEEeCCCCce----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-------
Confidence 4578999999653122 5999999999999999999999999999999999998 899999999865321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
...+++ .++|++|++.+++..|+.+|+.+........ ....+++.++++.+++.+... +++.+|||||||||+|
T Consensus 70 ---~~~~~~-~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~l 144 (220)
T cd03263 70 ---RKAARQ-SLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-KRARTLSGGMKRKLSL 144 (220)
T ss_pred ---hHHHhh-hEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-ChhhhCCHHHHHHHHH
Confidence 012343 7999999999998899999997643222111 111245667888899986554 8899999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|||++|||++. +.++||+++++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~--~~~~~d~i~~l~~ 207 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR----KGRSIILTTHSMDE--AEALCDRIAIMSD 207 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEcCCHHH--HHHhcCEEEEEEC
Confidence 999999999999999 999999999999999983 25899999996665 8889999999876
No 76
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.5e-43 Score=330.13 Aligned_cols=202 Identities=19% Similarity=0.177 Sum_probs=163.8
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh-----c-ccceeeeEeecCCCccc
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL-----S-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~-----~-~~G~I~i~G~~i~~~~~ 140 (382)
|+++||+++|+... +|+|+||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++....
T Consensus 1 i~~~~l~~~~~~~~------~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~- 73 (227)
T cd03260 1 IELRDLNVYYGDKH------ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD- 73 (227)
T ss_pred CEEEEEEEEcCCce------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcc-
Confidence 45789999996432 699999999999999999999999999999999999 8 7999999998653221
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc--ccccccccCccccccccccccc--cCCCcc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH--HNQRCLRSDDCALMKNDAEIDD--LKSSPK 216 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~--~~~~~~~~l~~~~L~~~~~~~~--~~~LSG 216 (382)
.+...+++ .++|+||++.+| .+|+.+|+.+.......... ..+++.++++.+|+.+... +. +.+|||
T Consensus 74 ------~~~~~~~~-~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~LSg 144 (227)
T cd03260 74 ------VDVLELRR-RVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK-DRLHALGLSG 144 (227)
T ss_pred ------hHHHHHHh-hEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHh-ccCCcccCCH
Confidence 01122343 899999999888 69999999754321111111 2345677889999986555 44 699999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++ .|||++|||++. +..+||+++++++
T Consensus 145 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~-~tii~~sH~~~~--~~~~~d~i~~l~~ 215 (227)
T cd03260 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK---KE-YTIVIVTHNMQQ--AARVADRTAFLLN 215 (227)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---hC-cEEEEEeccHHH--HHHhCCEEEEEeC
Confidence 99999999999999999999999 999999999999999983 34 899999996655 8889999999876
No 77
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.8e-43 Score=328.82 Aligned_cols=207 Identities=20% Similarity=0.158 Sum_probs=167.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~-~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----- 70 (222)
T PRK10908 1 MIRFEHVSKAYLGGR-Q----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLK----- 70 (222)
T ss_pred CEEEEeeEEEecCCC-e----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCC-----
Confidence 467899999994222 2 5999999999999999999999999999999999999 8999999998764221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
......+++ .++|++|++.+++..|+.+|+.+........ ....+.+.++++.+++.+... +++.+|||||||||+
T Consensus 71 -~~~~~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ 147 (222)
T PRK10908 71 -NREVPFLRR-QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-NFPIQLSGGEQQRVG 147 (222)
T ss_pred -hhHHHHHHh-heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CCchhCCHHHHHHHH
Confidence 111122343 8999999998888899999997643211111 111234567888999986654 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|+|++|||++. +..+||+++++++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 212 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF---NRVGVTVLMATHDIGL--ISRRSYRMLTLSD 212 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999 99999999999999998 3358999999996665 8889999998876
No 78
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-43 Score=328.81 Aligned_cols=199 Identities=15% Similarity=0.104 Sum_probs=165.3
Q ss_pred hHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++|++++|+++. .+ +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~~~~~----il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------ 70 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVT----ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG------ 70 (220)
T ss_pred CeEEEEEEEcCCCCcceE----EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc------
Confidence 45789999996421 22 5999999999999999999999999999999999998 89999999986531
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.+ +.++|++|++.+|+..|+.+|+.+........ ....+.+.++++.+++.+... +.+.+||||||||+
T Consensus 71 --------~~-~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl 140 (220)
T cd03293 71 --------PG-PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-AYPHQLSGGMRQRV 140 (220)
T ss_pred --------cc-CcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHHH
Confidence 12 37999999999998899999997643211111 112345677889999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +..+||++++|+
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~ 206 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW--RETGKTVLLVTHDIDE--AVFLADRVVVLS 206 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHH--HHcCCEEEEEecCHHH--HHHhCCEEEEEE
Confidence 99999999999999999 999999999999999873 3458999999996654 888999999987
No 79
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=342.89 Aligned_cols=224 Identities=14% Similarity=0.116 Sum_probs=174.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+..... ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 3 l~~~~l~~~y~~~~~~-~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----- 76 (290)
T PRK13634 3 ITFQKVEHRYQYKTPF-ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK----- 76 (290)
T ss_pred EEEEEEEEEECCCCcc-cccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccc-----
Confidence 6789999999642100 0016999999999999999999999999999999999999 89999999997642110
Q ss_pred hhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 146 MEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.......++ .+||+||++ .+|+ .|+.+|+.+.....+.. ....+++.++++.++|.+.+.++++.+|||||||||
T Consensus 77 ~~~~~~~~~-~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (290)
T PRK13634 77 NKKLKPLRK-KVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV 154 (290)
T ss_pred cchHHHHHh-hEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHH
Confidence 011122343 799999986 4564 79999997643221111 111245677889999974434589999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||++. +..+||+|++|++ +..+++
T Consensus 155 ~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~--~~~g~tviiitHd~~~--~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH--KEKGLTTVLVTHSMED--AARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999 999999999999999983 4458999999996665 8889999999987 445555
Q ss_pred cceeeE
Q 016817 297 SGVYDI 302 (382)
Q Consensus 297 ~~v~~~ 302 (382)
++++..
T Consensus 231 ~~~~~~ 236 (290)
T PRK13634 231 REIFAD 236 (290)
T ss_pred HHHhcC
Confidence 666643
No 80
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-43 Score=352.84 Aligned_cols=220 Identities=15% Similarity=0.115 Sum_probs=177.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..++++++.+.|+.. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++....
T Consensus 27 ~~~~~~~~~~~~~~~--~----~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~---- 96 (400)
T PRK10070 27 QGLSKEQILEKTGLS--L----GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS---- 96 (400)
T ss_pred ccccHHHHHhhcCCe--E----EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCC----
Confidence 367788888888432 2 6999999999999999999999999999999999999 8999999999765322
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.......+++.+||+||++.+|+++|+.+|+.+.....+.. ....+++.++++.+||.+... ++|.+|||||||||
T Consensus 97 --~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-~~~~~LSgGq~QRv 173 (400)
T PRK10070 97 --DAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-SYPDELSGGMRQRV 173 (400)
T ss_pred --HHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-cCcccCCHHHHHHH
Confidence 11222233347999999999999999999997653221111 112345677899999986654 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+++.|.++. ++.|+|||+||||++. +.++||++++|++ +..+++
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~--~~~g~TIIivTHd~~~--~~~~~Dri~vL~~G~i~~~g~~ 249 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQ--AKHQRTIVFISHDLDE--AMRIGDRIAIMQNGEVVQVGTP 249 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH--HHCCCeEEEEECCHHH--HHHhCCEEEEEECCEEEecCCH
Confidence 99999999999999999 999999999999999983 3458999999996555 8899999999987 334445
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
++++.
T Consensus 250 ~~l~~ 254 (400)
T PRK10070 250 DEILN 254 (400)
T ss_pred HHHHh
Confidence 55544
No 81
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-43 Score=330.79 Aligned_cols=207 Identities=17% Similarity=0.126 Sum_probs=167.4
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~-~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~------ 69 (241)
T cd03256 1 IEVENLSKTYPNG-KK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK------ 69 (241)
T ss_pred CEEeeEEEecCCc-cE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccC------
Confidence 3578999999642 22 5999999999999999999999999999999999998 8999999998764321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh--------hh-cCccccccccccCccccccccccccccCCCcc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW--------MS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~--------~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
......+++ .++|++|++.+|+.+|+.+|+.+.... .. ......+++.++++.+++.+... +++.+|||
T Consensus 70 ~~~~~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~ 147 (241)
T cd03256 70 GKALRQLRR-QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-QRADQLSG 147 (241)
T ss_pred HhHHHHHHh-ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-CCcccCCH
Confidence 111122343 899999999999889999999653210 00 00112245667788999986554 89999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||++|||++. +..+||++++|++
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~tH~~~~--~~~~~d~v~~l~~ 220 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRIN--REEGITVIVSLHQVDL--AREYADRIVGLKD 220 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999 999999999999999983 3358999999996655 8889999999976
No 82
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-43 Score=341.98 Aligned_cols=220 Identities=16% Similarity=0.138 Sum_probs=172.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++||+++|+.+... ..++|+||||+|++||++||+||||||||||+++|+|+++ ++|+|+++|+++...+.
T Consensus 3 l~~~~l~~~y~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----- 76 (287)
T PRK13637 3 IKIENLTHIYMEGTPF-EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV----- 76 (287)
T ss_pred EEEEEEEEECCCCCcc-ccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc-----
Confidence 6789999999642100 0016999999999999999999999999999999999999 89999999987643210
Q ss_pred hhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhh-cCccccccccccCcccccc--ccccccccCCCccceee
Q 016817 146 MEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMK--NDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~LSGGqkQ 220 (382)
.....++ .+||+||++ .+|+ .|+.+|+.+.....+ ......+++.++++.+||. +.. ++++.+|||||||
T Consensus 77 --~~~~~~~-~ig~v~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~~LSgGq~q 151 (287)
T PRK13637 77 --KLSDIRK-KVGLVFQYPEYQLFE-ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK-DKSPFELSGGQKR 151 (287)
T ss_pred --cHHHHhh-ceEEEecCchhcccc-ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhc-cCCcccCCHHHHH
Confidence 0112343 899999986 3444 799999975432211 1111224567889999996 444 5999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||++. +..+||+++++++ +..+
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~--~~~g~tvi~vtHd~~~--~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELH--KEYNMTIILVSHSMED--VAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999 999999999999999983 3458999999996655 8889999999976 4455
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
++.+++.
T Consensus 228 ~~~~~~~ 234 (287)
T PRK13637 228 TPREVFK 234 (287)
T ss_pred CHHHHHh
Confidence 5555654
No 83
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2e-43 Score=338.27 Aligned_cols=209 Identities=13% Similarity=0.097 Sum_probs=170.1
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+.+|+++|++++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++.....
T Consensus 5 ~~~l~~~~l~~~~~~~--~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-- 76 (269)
T PRK11831 5 ANLVDMRGVSFTRGNR--C----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSR-- 76 (269)
T ss_pred cceEEEeCeEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccCh--
Confidence 4589999999999542 2 5999999999999999999999999999999999998 89999999986643211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccccccccccCCCccceee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
......++ .++|+||++.+|+.+|+.+|+.+....... . ....+.+.++++.+++.+... +++.+|||||||
T Consensus 77 ----~~~~~~~~-~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~q 150 (269)
T PRK11831 77 ----SRLYTVRK-RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-LMPSELSGGMAR 150 (269)
T ss_pred ----hhHHHHhh-cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHH
Confidence 11112343 799999999999888999999764211110 0 011234566788999986554 899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +.++||+++++++
T Consensus 151 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tiiivsH~~~~--~~~~~d~v~~l~~ 219 (269)
T PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELN--SALGVTCVVVSHDVPE--VLSIADHAYIVAD 219 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhcCcEEEEEecCHHH--HHHhhCEEEEEEC
Confidence 9999999999999999999 999999999999999983 3348999999996555 8889999999976
No 84
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=301.46 Aligned_cols=208 Identities=19% Similarity=0.107 Sum_probs=176.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.|+++|+++.|+... +|.||+|+.++||.+.++||||+|||||+|.++-+.- .+|+..|.|.... .+ ...
T Consensus 2 sirv~~in~~yg~~q------~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd-~s--~~~ 72 (242)
T COG4161 2 SIQLNGINCFYGAHQ------ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFD-FS--KTP 72 (242)
T ss_pred ceEEcccccccccch------heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccc-cc--cCc
Confidence 367899999997765 7999999999999999999999999999999998877 7999999886432 21 122
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc---ccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH---HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..++...+|+ ++|||||.+.|+|++||.+|+-+..... .+.. ...++.++++++.|.++.+ ++|-.|||||+||
T Consensus 73 ~~k~i~~lr~-~vgmvfqqy~lwphltv~enlieap~kv-~gl~~~qa~~~a~ellkrlrl~~~ad-r~plhlsggqqqr 149 (242)
T COG4161 73 SDKAIRDLRR-NVGMVFQQYNLWPHLTVQENLIEAPCRV-LGLSKDQALARAEKLLKRLRLKPYAD-RYPLHLSGGQQQR 149 (242)
T ss_pred cHHHHHHHHH-hhhhhhhhhccCchhHHHHHHHhhhHHH-hCCCHHHHHHHHHHHHHHhccccccc-cCceecccchhhh
Confidence 3356666886 9999999999999999999997754322 2222 2345667888999997765 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+++|++|++|| +|||+-..++.++|+++ .+.|.|-++|||+.+. +.+.+.+|+.|++
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel---~~tgitqvivthev~v--a~k~as~vvyme~ 216 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL---AETGITQVIVTHEVEV--ARKTASRVVYMEN 216 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH---HhcCceEEEEEeehhH--HHhhhhheEeeec
Confidence 999999999999999999 99999999999999999 5689999999995555 9999999999987
No 85
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.6e-43 Score=326.16 Aligned_cols=208 Identities=18% Similarity=0.106 Sum_probs=166.2
Q ss_pred hHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++||+++|+++. .+ +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 2 l~~~~v~~~~~~~~~~~~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~---- 73 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTR----VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS---- 73 (221)
T ss_pred EEEEeeeEEccCCCcceE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC----
Confidence 56889999996432 22 5999999999999999999999999999999999999 8999999998764321
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
......+|++.++|++|++.+|+..|+.+|+.+....... .....+.+.++++.+|+.+... +++.+|||||||||
T Consensus 74 --~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv 150 (221)
T TIGR02211 74 --SNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-HRPSELSGGERQRV 150 (221)
T ss_pred --HhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHH
Confidence 1112223323799999999999889999999764311111 1112235667888999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +.. +|++++|++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~tH~~~~--~~~-~d~v~~l~~ 216 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN--RELNTSFLVVTHDLEL--AKK-LDRVLEMKD 216 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--Hhh-cCEEEEEeC
Confidence 99999999999999999 999999999999999983 3458999999997665 655 588888764
No 86
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2e-43 Score=367.72 Aligned_cols=222 Identities=17% Similarity=0.134 Sum_probs=185.4
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhh----------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA----------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl 93 (382)
++..|+..+......+..+..+.+|+.++++.++.. ..+..+.|+++||+|+|++++ + +|+|+||
T Consensus 282 ~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~----vL~~isl 356 (529)
T TIGR02868 282 AAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSP-P----VLDGVSL 356 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCC-c----eeecceE
Confidence 467889999999999999999999999998766421 001123589999999997543 2 5999999
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRV 172 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv 172 (382)
+|++||.+||+||||||||||+|+|+|+++ ++|+|.+||.++.+. ...+|+ +++||+|++.+|+ .|+
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~----------~~~lr~-~i~~V~Q~~~lF~-~TI 424 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL----------QDELRR-RISVFAQDAHLFD-TTV 424 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH----------HHHHHh-heEEEccCccccc-ccH
Confidence 999999999999999999999999999999 899999999977533 223665 8999999999998 799
Q ss_pred hhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh--
Q 016817 173 HEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 173 ~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE-- 239 (382)
+||+.+. .+...++++.++++.+++++++. +.| ..||||||||++|||||+++|+||||||
T Consensus 425 ~eNI~~g-----~~~~~~e~i~~al~~a~l~~~i~-~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T 498 (529)
T TIGR02868 425 RDNLRLG-----RPDATDEELWAALERVGLADWLR-SLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT 498 (529)
T ss_pred HHHHhcc-----CCCCCHHHHHHHHHHcCCHHHHH-hCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999642 23345667888888888876554 333 3499999999999999999999999999
Q ss_pred -cCCCCcchhhhhhccCccccccCCCCeEEEecC
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd 272 (382)
+||++++..+.+.+.++. .++|+|+|||+
T Consensus 499 SaLD~~te~~I~~~l~~~~----~~~TvIiItHr 528 (529)
T TIGR02868 499 EHLDAGTESELLEDLLAAL----SGKTVVVITHH 528 (529)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEEecC
Confidence 999999999999999862 57999999994
No 87
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3e-43 Score=323.46 Aligned_cols=196 Identities=16% Similarity=0.139 Sum_probs=161.5
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
+++|++++|+++ .. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~~-~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--------- 66 (205)
T cd03226 1 RIENISFSYKKG-TE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--------- 66 (205)
T ss_pred CcccEEEEeCCc-Cc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---------
Confidence 368999999652 22 6999999999999999999999999999999999998 89999999986521
Q ss_pred hhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 147 EEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
...+ +.+||+||++. .+...|+.+|+.+.... .. ...+++.++++.+++.+... ++|.+|||||||||+||
T Consensus 67 ---~~~~-~~i~~~~q~~~~~~~~~tv~e~l~~~~~~--~~-~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la 138 (205)
T cd03226 67 ---KERR-KSIGYVMQDVDYQLFTDSVREELLLGLKE--LD-AGNEQAETVLKDLDLYALKE-RHPLSLSGGQKQRLAIA 138 (205)
T ss_pred ---HHhh-cceEEEecChhhhhhhccHHHHHhhhhhh--cC-ccHHHHHHHHHHcCCchhcC-CCchhCCHHHHHHHHHH
Confidence 1123 37999999974 23357999999653211 11 12245678899999987654 99999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ .+.|.|||++|||++. +..+||+++++++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sH~~~~--~~~~~d~i~~l~~ 201 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIREL---AAQGKAVIVITHDYEF--LAKVCDRVLLLAN 201 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999 99999999999999998 3358999999996555 8888999988864
No 88
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.2e-43 Score=324.87 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=166.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. + +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~--~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------- 67 (208)
T cd03268 1 LKTNDLTKTYGKK--R----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN------- 67 (208)
T ss_pred CEEEEEEEEECCe--E----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-------
Confidence 3578999999542 2 5999999999999999999999999999999999999 899999999865311
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
...++ .++|+||++.+++..|+.+|+....... . ...+++.++++.+++.+... +++.+|||||||||+||
T Consensus 68 ----~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~-~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la 138 (208)
T cd03268 68 ----IEALR-RIGALIEAPGFYPNLTARENLRLLARLL--G-IRKKRIDEVLDVVGLKDSAK-KKVKGFSLGMKQRLGIA 138 (208)
T ss_pred ----HHHHh-hEEEecCCCccCccCcHHHHHHHHHHhc--C-CcHHHHHHHHHHcCCHHHHh-hhHhhCCHHHHHHHHHH
Confidence 11333 7999999999998899999997643211 1 12345677889999986654 89999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ .++|.|+|++|||++. +..+||+++++++
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~tH~~~~--~~~~~d~v~~l~~ 201 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSL---RDQGITVLISSHLLSE--IQKVADRIGIINK 201 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEcCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999 99999999999999998 3368999999996665 8888999998875
No 89
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=341.44 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=173.8
Q ss_pred hhHHHHHhhhcccCC-eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~-~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+++++|++++|+... .. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++....
T Consensus 4 ~l~~~~l~~~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~---- 75 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKY----TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEN---- 75 (279)
T ss_pred eEEEEeEEEEcCCCCcCe----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCc----
Confidence 688999999996432 22 5999999999999999999999999999999999999 8999999998764211
Q ss_pred ehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...+|+ .+||+||++. +++..|+.+|+.+.....+.. ....+++.++++.+||.+..+ ++|.+||||||||
T Consensus 76 -----~~~~~~-~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qr 148 (279)
T PRK13650 76 -----VWDIRH-KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-REPARLSGGQKQR 148 (279)
T ss_pred -----HHHHHh-hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHH
Confidence 112444 8999999973 566689999997543221111 112345678899999986654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..+++.|+++. ++.|+|||+||||++. +. .||+++++++ +..++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tilivtH~~~~--~~-~~dri~~l~~G~i~~~g~ 223 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIR--DDYQMTVISITHDLDE--VA-LSDRVLVMKNGQVESTST 223 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HH-hCCEEEEEECCEEEEECC
Confidence 999999999999999999 999999999999999983 3358999999997665 74 7899988876 34555
Q ss_pred ccceeeE
Q 016817 296 ISGVYDI 302 (382)
Q Consensus 296 ~~~v~~~ 302 (382)
+++++..
T Consensus 224 ~~~~~~~ 230 (279)
T PRK13650 224 PRELFSR 230 (279)
T ss_pred HHHHHcC
Confidence 6566543
No 90
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=343.43 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=174.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccc-----
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH----- 140 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~----- 140 (382)
|+++|++++|+++... ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.....
T Consensus 3 i~~~~l~~~y~~~~~~-~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 3 IKVKNIVKIFNKKLPT-ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 7789999999653210 0016999999999999999999999999999999999999 89999999876421100
Q ss_pred -----c--ee---ehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCcccccccccc
Q 016817 141 -----T--IT---MYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAE 207 (382)
Q Consensus 141 -----~--~~---~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~ 207 (382)
. .. ........+++ .+||+||++ .+|. .||.+|+.+.....+.. ....+++.++++.+||.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRR-RVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred ccccccccccccccccchHHHHHh-ceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 0 00 00011223444 899999985 4554 79999997543222111 112345778899999963334
Q ss_pred ccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
+++|.+|||||||||+|||||+.+|++||||| +||+.++..+++.|+++ ++.|.|||+||||++. +.++||+
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tiiivtHd~~~--~~~~adr 234 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL---NKQGKTIILVTHDLDN--VLEWTKR 234 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeeCHHH--HHHhCCE
Confidence 59999999999999999999999999999999 99999999999999998 3468999999996665 8889999
Q ss_pred hhhhhh---cccccccceeeE
Q 016817 285 LKICEY---LGVSEISGVYDI 302 (382)
Q Consensus 285 v~ll~~---~~~~~~~~v~~~ 302 (382)
+++|++ +..+++++++..
T Consensus 235 v~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 235 TIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEEECCEEEEECCHHHHhcC
Confidence 999987 445566666643
No 91
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.9e-43 Score=323.91 Aligned_cols=204 Identities=14% Similarity=0.130 Sum_probs=166.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.. . +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 68 (213)
T cd03262 1 IEIKNLHKSFGDF--H----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK------ 68 (213)
T ss_pred CEEEEEEEEECCe--E----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccc------
Confidence 3578999999642 2 5999999999999999999999999999999999999 8999999998653110
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.....+++ .++|++|++.+|+.+|+.+|+.+....... .....+++.++++.+++.+... +++.+|||||+|||+
T Consensus 69 -~~~~~~~~-~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ 145 (213)
T cd03262 69 -KNINELRQ-KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-AYPAQLSGGQQQRVA 145 (213)
T ss_pred -hhHHHHHh-cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-hCccccCHHHHHHHH
Confidence 11112343 899999999999889999999764321111 1112235667888899986554 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ ++.|+|||++|||++. +.++||+++++++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tvi~~sh~~~~--~~~~~d~i~~l~~ 210 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL---AEEGMTMVVVTHEMGF--AREVADRVIFMDD 210 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 9999999999999999 99999999999999998 3358999999996555 8889999988764
No 92
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.9e-43 Score=331.95 Aligned_cols=211 Identities=13% Similarity=0.111 Sum_probs=169.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...... ..
T Consensus 3 ~l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~ 75 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--T----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL-SQ 75 (250)
T ss_pred cEEEeceEEEECCe--e----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccc-cc
Confidence 68899999999643 2 5999999999999999999999999999999999998 899999999876422100 00
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.......+++ .++|++|++.+|+..|+.+|+.+....... . ....+++.++++.+|+.+.. ++++.+|||||||||
T Consensus 76 ~~~~~~~~~~-~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 76 QKGLIRQLRQ-HVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-TSYPRRLSGGQQQRV 153 (250)
T ss_pred hhhHHHHhhh-hEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-hCChhhCChHHHHHH
Confidence 0001122343 799999999999889999999754221111 0 11123466778889998654 489999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +..+||++++|++
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~~~tvi~~tH~~~~--~~~~~d~i~~l~~ 219 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL---AQEKRTMVIVTHEMSF--ARDVADRAIFMDQ 219 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999 99999999999999998 3358999999996555 8889999999976
No 93
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.4e-43 Score=381.02 Aligned_cols=249 Identities=17% Similarity=0.137 Sum_probs=200.1
Q ss_pred eeccccchhhhhhhccCCCCccccchhHHHHHHhhhhhhc--------------CcCchhHHHHHhhhcccCCeeeecCC
Q 016817 22 WWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALI--------------APDGLNELRHKFLSYRSGDFWIPIGG 87 (382)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~i~nvs~~y~~~~~~v~~~v 87 (382)
..++..|+.+++.....++.+..+.+|+.++++.++.... ...+.|+++||+|+|++..++ +
T Consensus 419 ~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~----v 494 (710)
T TIGR03796 419 MSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPP----L 494 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCC----c
Confidence 3467899999999999999999999999999987643110 012468999999999864333 6
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
|+|+||+|++||.+||+||||||||||+|+|+|+++ ++|+|.+||.++.+.. ...+|+ .+|||+|++.+
T Consensus 495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~---------~~~lr~-~i~~v~Q~~~l 564 (710)
T TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP---------REVLAN-SVAMVDQDIFL 564 (710)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC---------HHHHHh-heeEEecCChh
Confidence 999999999999999999999999999999999999 8999999999775432 223665 99999999999
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccc-----------cCCCccceeeecceeeeehhHHHHH
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-----------LKSSPKYVLRRVDFAMVVSNIAEIY 235 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~LSGGqkQRvaIAraL~~~P~iL 235 (382)
|+ .|++||+... .+...++++.++++.+++.+.+. +. ...||||||||++|||||+++|++|
T Consensus 565 f~-gTi~eNi~l~-----~~~~~~~~i~~al~~~~l~~~i~-~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~il 637 (710)
T TIGR03796 565 FE-GTVRDNLTLW-----DPTIPDADLVRACKDAAIHDVIT-SRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSIL 637 (710)
T ss_pred hh-ccHHHHhhCC-----CCCCCHHHHHHHHHHhCCHHHHH-hCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 97 7999999532 22344566777788777765443 32 2459999999999999999999999
Q ss_pred HHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 236 KALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 236 LLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|||| +||+.++..+.+.|++ .++|+|+||| +++.+.. +|+|++|++ +..|+.++++
T Consensus 638 iLDEptS~LD~~te~~i~~~l~~------~~~T~IiitH--rl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 638 ILDEATSALDPETEKIIDDNLRR------RGCTCIIVAH--RLSTIRD-CDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred EEECccccCCHHHHHHHHHHHHh------cCCEEEEEec--CHHHHHh-CCEEEEEeCCEEEEecCHHHHH
Confidence 9999 9999999999999875 3799999999 5554664 788888876 4445444443
No 94
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.5e-43 Score=341.18 Aligned_cols=196 Identities=15% Similarity=0.113 Sum_probs=162.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+|+||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++... ...+|+ .+||++|++.
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------~~~~~~-~i~~~~q~~~ 76 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE----------PRKVRR-SIGIVPQYAS 76 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC----------HHHHHh-hcEEecCCCC
Confidence 6999999999999999999999999999999999998 899999999865321 112343 7999999999
Q ss_pred CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 166 GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+++.+|+.+|+.+.....+.. ....+++.++++.+++.+... +++.+|||||||||+|||||+.+|++||||| +|
T Consensus 77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 77 VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999999999997654322111 112345678899999986654 9999999999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
|+.++..+++.|+++ +++|+|||++|||++. +.++||++++|++ +..+++.++
T Consensus 156 D~~~~~~l~~~l~~~---~~~g~tvi~~sH~~~~--~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 156 DPRTRRAIWDYIRAL---KEEGVTILLTTHYMEE--ADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred CHHHHHHHHHHHHHH---HhCCCEEEEECCCHHH--HHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999998 3458999999996555 9999999999986 334444443
No 95
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-43 Score=335.13 Aligned_cols=206 Identities=17% Similarity=0.114 Sum_probs=168.0
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
.++|+++.|+... +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 26 ~~~~~~~~~~~~~------il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~------ 93 (269)
T cd03294 26 SKEEILKKTGQTV------GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSR------ 93 (269)
T ss_pred hhhhhhhhcCCce------EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccCh------
Confidence 6779999996543 5999999999999999999999999999999999999 89999999987643211
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
.....++.+.++|++|++.+|+.+|+.+|+.+...... ......+++.++++.+++.+... +++.+|||||||||+||
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 94 KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-KYPDELSGGMQQRVGLA 172 (269)
T ss_pred hhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CCcccCCHHHHHHHHHH
Confidence 11111222379999999999988999999976432111 11112245667889999986654 99999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +.++||++++|++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tiii~tH~~~~--~~~~~d~v~~l~~ 236 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQ--AELQKTIVFITHDLDE--ALRLGDRIAIMKD 236 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999 999999999999999983 3458999999996555 8889999999876
No 96
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-43 Score=322.03 Aligned_cols=219 Identities=12% Similarity=0.078 Sum_probs=177.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++..|+... +|++|||++++||+++|+||||+|||||+|+|+|+.+ .+|+|.++|+|+...+..
T Consensus 2 ~mL~v~~l~~~YG~~~------~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~-- 73 (237)
T COG0410 2 PMLEVENLSAGYGKIQ------ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPH-- 73 (237)
T ss_pred CceeEEeEeeccccee------EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHH--
Confidence 5789999999996533 6999999999999999999999999999999999999 799999999988754422
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccc-ccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL-MKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~LSGGqkQRv 222 (382)
+ ..|. .++||||.-.+|+.+||.||+.................+++.+.|- |.+.. +++..+|||||||.+
T Consensus 74 ----~--r~r~-Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~-~~~aG~LSGGEQQML 145 (237)
T COG0410 74 ----E--RARL-GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERR-NQRAGTLSGGEQQML 145 (237)
T ss_pred ----H--HHhC-CeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHh-cCcccCCChHHHHHH
Confidence 2 2343 8999999999999999999997654322110111111444555553 44443 488899999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
||||||+.+|++||||| +|-|.-..+|.+.|+++. ++.|.||++|.++.+. +.+++|+.++|.+ +.+++.
T Consensus 146 AiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~--~~~g~tIlLVEQn~~~--Al~iaDr~yvle~Griv~~G~~ 221 (237)
T COG0410 146 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR--KEGGMTILLVEQNARF--ALEIADRGYVLENGRIVLSGTA 221 (237)
T ss_pred HHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHH--HcCCcEEEEEeccHHH--HHHhhCEEEEEeCCEEEEecCH
Confidence 99999999999999999 999999999999999993 4558899999996666 9999999999987 566666
Q ss_pred cceeeEE
Q 016817 297 SGVYDIV 303 (382)
Q Consensus 297 ~~v~~~~ 303 (382)
+++.+.+
T Consensus 222 ~eL~~~~ 228 (237)
T COG0410 222 AELLADP 228 (237)
T ss_pred HHHhcCH
Confidence 6665443
No 97
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=345.57 Aligned_cols=233 Identities=12% Similarity=0.097 Sum_probs=177.5
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccc-
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH- 140 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~- 140 (382)
..++|+++|++++|+.+... ..++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++.+...
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~-~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQEN-ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCceEEEEeEEEEeCCCCcc-cccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 34689999999999643100 0016999999999999999999999999999999999999 89999999987643100
Q ss_pred --c-e---eehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCcccccccccccccc
Q 016817 141 --T-I---TMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 141 --~-~---~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
. . .........+|+ .+||+||++ .+|+ .|+.+|+.+........ ....+++.++++.+++.+...++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~-~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRR-RVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccccchHHHHHh-cEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 0 0 000011223454 899999987 5776 59999996543211111 1112356678889999632334899
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+++.|+++ .++|.|||+||||++. +..+||++++|
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l---~~~g~TiiivtHd~~~--~~~~adri~vl 249 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDA---KANNKTVFVITHTMEH--VLEVADEVIVM 249 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3358999999996655 88889999999
Q ss_pred hh---cccccccceeeEE
Q 016817 289 EY---LGVSEISGVYDIV 303 (382)
Q Consensus 289 ~~---~~~~~~~~v~~~~ 303 (382)
++ +..+++++++..+
T Consensus 250 ~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 250 DKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred ECCEEEEeCCHHHHhcCH
Confidence 87 5556666666543
No 98
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.8e-43 Score=330.30 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=167.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+|+||++++||+++|+||||||||||+++|+|+++ ++|+|+++|.++....
T Consensus 1 ~l~~~~l~~~~~~~--~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----- 69 (240)
T PRK09493 1 MIEFKNVSKHFGPT--Q----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPK----- 69 (240)
T ss_pred CEEEEeEEEEECCe--E----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-----
Confidence 46788999999642 2 5999999999999999999999999999999999998 8999999998764211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.....+++ .++|++|++.+++.+|+.+|+.+....... .....+.+.++++.+|+.+.++ +++.+|||||||||
T Consensus 70 --~~~~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv 145 (240)
T PRK09493 70 --VDERLIRQ-EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-HYPSELSGGQQQRV 145 (240)
T ss_pred --hhHHHHhh-ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-cChhhcCHHHHHHH
Confidence 01112343 799999999999889999999654211111 1112245667888999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|||++|||++. +..+||+++++++
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 211 (240)
T PRK09493 146 AIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL---AEEGMTMVIVTHEIGF--AEKVASRLIFIDK 211 (240)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999 99999999999999998 3358999999996655 8888999999976
No 99
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3e-43 Score=342.29 Aligned_cols=209 Identities=13% Similarity=0.110 Sum_probs=172.4
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. . +|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 3 l~~~~l~~~~~~~--~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~------ 70 (301)
T TIGR03522 3 IRVSSLTKLYGTQ--N----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP------ 70 (301)
T ss_pred EEEEEEEEEECCE--E----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh------
Confidence 6789999999642 2 5999999999999999999999999999999999999 8999999998654211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+++ .+||+||++.+|+.+|+.+|+.+....++.. ....+++.++++.+|+.+..+ +++.+|||||||||+|
T Consensus 71 ----~~~~~-~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~l 144 (301)
T TIGR03522 71 ----KEVQR-NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-KKIGQLSKGYRQRVGL 144 (301)
T ss_pred ----HHHHh-ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CchhhCCHHHHHHHHH
Confidence 12344 8999999999999999999997654322211 112345677899999987654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
||||+.+|++||||| +||+.++..+++.|+++ + .++|||++||+++. +.++||+++++++ +..++..+
T Consensus 145 a~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~---~-~~~tiii~sH~l~~--~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 145 AQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI---G-KDKTIILSTHIMQE--VEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh---c-CCCEEEEEcCCHHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999 99999999999999998 3 36999999995554 9999999999976 33444444
Q ss_pred e
Q 016817 299 V 299 (382)
Q Consensus 299 v 299 (382)
+
T Consensus 219 ~ 219 (301)
T TIGR03522 219 L 219 (301)
T ss_pred H
Confidence 3
No 100
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=337.98 Aligned_cols=205 Identities=15% Similarity=0.137 Sum_probs=167.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|+.+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 3 ~~l~~~~l~~~~~~~~-~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---- 73 (274)
T PRK13647 3 NIIEVEDLHFRYKDGT-K----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEN---- 73 (274)
T ss_pred ceEEEEEEEEEeCCCC-e----eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCC----
Confidence 3688999999996332 2 6999999999999999999999999999999999999 8999999998764221
Q ss_pred ehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...+++ .+||+||++. .++..|+.+|+.+....... .....+++.++++.+++.+... ++|.+||||||||
T Consensus 74 -----~~~~~~-~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgG~~qr 146 (274)
T PRK13647 74 -----EKWVRS-KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-KPPYHLSYGQKKR 146 (274)
T ss_pred -----HHHHHh-hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CChhhCCHHHHHH
Confidence 111333 7999999973 33457999999754321111 1112245677889999986654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..++++|+++. ++|.|||++|||++. +.++||++++|++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~g~tili~tH~~~~--~~~~~d~i~~l~~ 213 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLH---NQGKTVIVATHDVDL--AAEWADQVIVLKE 213 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH---HCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 999999999999999983 358999999996665 8889999999987
No 101
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=7e-43 Score=325.87 Aligned_cols=213 Identities=17% Similarity=0.108 Sum_probs=169.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++++|++++|+.+.... ++|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~--- 78 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHEL--SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD--- 78 (228)
T ss_pred CceEEEeeeEEEccCCCcce--EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCC---
Confidence 35899999999997532110 15999999999999999999999999999999999998 8999999998664321
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
......++.+.++|++|++.+++.+|+.+|+.+....... .....+++.++++.+++.+... +++.+||||||||
T Consensus 79 ---~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qr 154 (228)
T PRK10584 79 ---EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-HLPAQLSGGEQQR 154 (228)
T ss_pred ---HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHH
Confidence 1112223334799999999999988999999754311111 1112345677889999986654 8999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +.. ||+++++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~-~d~i~~l~~ 221 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLN--REHGTTLILVTHDLQL--AAR-CDRRLRLVN 221 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHh-CCEEEEEEC
Confidence 999999999999999999 999999999999999983 3458999999997665 654 788888865
No 102
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.8e-43 Score=333.11 Aligned_cols=215 Identities=12% Similarity=0.060 Sum_probs=172.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++++|+++.|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.......
T Consensus 3 ~~~l~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 3 ENKLNVIDLHKRYGEH--E----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred CccEEEeeeEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccc
Confidence 4578999999999642 2 5999999999999999999999999999999999999 8999999998764211100
Q ss_pred e----ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCCCcc
Q 016817 143 T----MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 143 ~----~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
. ....+...+++ .++|++|++.+++.+|+.+|+.+....... .....+++.++++.+|+.+...++++.+|||
T Consensus 77 ~~~~~~~~~~~~~~~~-~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 77 GQLKVADKNQLRLLRT-RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred cccccccchHHHHHhh-ceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH
Confidence 0 01112223444 899999999999889999999753321111 1112345677889999986543488999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|+|||+||||++. +..+||+++++++
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l---~~~g~tiiivsH~~~~--~~~~~d~i~~l~~ 227 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL---AEEGKTMVVVTHEMGF--ARHVSSHVIFLHQ 227 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999999999 99999999999999998 3358999999996655 8888999999976
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-43 Score=339.25 Aligned_cols=223 Identities=12% Similarity=0.116 Sum_probs=173.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++||+++|+.+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.....
T Consensus 3 l~~~~l~~~y~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~----- 76 (286)
T PRK13646 3 IRFDNVSYTYQKGTPY-EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK----- 76 (286)
T ss_pred EEEEEEEEEECCCCcc-ccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc-----
Confidence 6789999999642200 0026999999999999999999999999999999999999 89999999997643210
Q ss_pred hhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 146 MEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
......+|+ .+||+||++ .+|+ .|+.+|+.+.....+.. ....+++.++++.+||.....++++.+|||||||||
T Consensus 77 ~~~~~~~~~-~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 77 DKYIRPVRK-RIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred cchHHHHHh-heEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 011222454 899999986 4665 69999997643221111 112345677888999963334489999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.++|+++. ++.|+|||+||||++. +.++||++++|++ +..+++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tvl~vtH~~~~--~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ--TDENKTIILVSHDMNE--VARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999 999999999999999983 3458999999996665 8889999999986 445555
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
.+++.
T Consensus 231 ~~~~~ 235 (286)
T PRK13646 231 KELFK 235 (286)
T ss_pred HHHHh
Confidence 55654
No 104
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-43 Score=333.69 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=165.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|++++|++++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++...
T Consensus 1 ml~~~~l~~~~~~~--~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------ 68 (255)
T PRK11248 1 MLQISHLYADYGGK--P----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP------ 68 (255)
T ss_pred CEEEEEEEEEeCCe--e----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC------
Confidence 46789999999642 2 5999999999999999999999999999999999998 899999999865321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
+ ..+||++|++.+++..|+.+|+.+........ ....+++.++++.+++.+... +++.+|||||||||+
T Consensus 69 --------~-~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrl~ 138 (255)
T PRK11248 69 --------G-AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVG 138 (255)
T ss_pred --------C-CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHH
Confidence 1 25899999999998899999996542211111 111245677889999986554 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +..+||++++++
T Consensus 139 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~g~tviivsH~~~~--~~~~~d~i~~l~ 203 (255)
T PRK11248 139 IARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLW--QETGKQVLLITHDIEE--AVFMATELVLLS 203 (255)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEe
Confidence 9999999999999999 999999999999999973 3358999999996665 888999999996
No 105
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-43 Score=323.47 Aligned_cols=199 Identities=16% Similarity=0.140 Sum_probs=164.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|++. + +|+|+||+|++| +++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 i~~~~~~~~~~~~--~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~------ 67 (211)
T cd03264 1 LQLENLTKRYGKK--R----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP------ 67 (211)
T ss_pred CEEEEEEEEECCE--E----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch------
Confidence 4578999999543 2 599999999999 999999999999999999999999 8999999998653211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+++ .++|++|++.+|+.+|+.+|+.+........ ....+.+.++++.+++.+..+ +++.+|||||||||+|
T Consensus 68 ----~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~l 141 (211)
T cd03264 68 ----QKLRR-RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-KKIGSLSGGMRRRVGI 141 (211)
T ss_pred ----HHHHh-heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-CchhhCCHHHHHHHHH
Confidence 12344 8999999999999889999997643211111 111245667888999986654 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. + +.|||+||||++. +.+++|+++++++
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tii~vsH~~~~--~~~~~d~i~~l~~ 204 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG---E-DRIVILSTHIVED--VESLCNQVAVLNK 204 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---C-CCEEEEEcCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 999999999999999983 2 5899999996665 8888999998875
No 106
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.7e-43 Score=323.23 Aligned_cols=196 Identities=15% Similarity=0.079 Sum_probs=161.0
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
+++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 1 ~~~~l~~~~~~~--~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---------- 64 (213)
T cd03235 1 EVEDLTVSYGGH--P----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE---------- 64 (213)
T ss_pred CcccceeEECCE--E----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----------
Confidence 368999999642 2 5999999999999999999999999999999999998 8999999997531
Q ss_pred hhhhhHhhhccceeeEeCCCC--ChhhhhhhHHHHHhhhhc-----CccccccccccCccccccccccccccCCCcccee
Q 016817 147 EEHNVMRSLQSGFCVYDSRGF--NYNRVHEGLEELSSWMSE-----GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~--~~~tv~eni~~~~~~~~~-----~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
..++ .++|++|++.++ ...|+.+|+......... .....+++.++++.+++.+... +++.+||||||
T Consensus 65 ----~~~~-~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~ 138 (213)
T cd03235 65 ----KERK-RIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-RQIGELSGGQQ 138 (213)
T ss_pred ----HHHh-heEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHH
Confidence 1333 799999998763 237999999653211100 0112245677888999986554 89999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++|.|||+||||++. +.++||++++|++
T Consensus 139 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~~tvi~~sH~~~~--~~~~~d~i~~l~~ 207 (213)
T cd03235 139 QRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR---REGMTILVVTHDLGL--VLEYFDRVLLLNR 207 (213)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH--HHHhcCEEEEEcC
Confidence 99999999999999999999 999999999999999983 368999999996555 8889999998875
No 107
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.5e-43 Score=378.09 Aligned_cols=240 Identities=18% Similarity=0.176 Sum_probs=198.3
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh--------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
+++..|+..++.....++.+..+.+|+.++++.++... ....+.|+++||+|+|++...+ +|+|+||+
T Consensus 412 ~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~----vL~~i~l~ 487 (694)
T TIGR03375 412 GRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETP----ALDNVSLT 487 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCcc----ceeeeeEE
Confidence 46789999999999999999999999999998765311 0112468999999999754333 59999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++||.+||+||||||||||+++|+|+++ ++|+|.+||.++.+.+. ..+|+ .++||+|++.+|+ .|++
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~---------~~lr~-~i~~v~Q~~~lf~-~TI~ 556 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP---------ADLRR-NIGYVPQDPRLFY-GTLR 556 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH---------HHHHh-ccEEECCChhhhh-hhHH
Confidence 99999999999999999999999999999 89999999998764432 23565 8999999999998 7999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
||+... .+..+++++.++++.+++.+.+. +.| ..||||||||++|||||+++|++|||||
T Consensus 557 eNi~~~-----~~~~~~~~i~~a~~~~~l~~~i~-~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts 630 (694)
T TIGR03375 557 DNIALG-----APYADDEEILRAAELAGVTEFVR-RHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTS 630 (694)
T ss_pred HHHhCC-----CCCCCHHHHHHHHHHcChHHHHH-hCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 999532 22344566777888888766543 333 3599999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||++++..+.+.|.++. +++|+|+|||+ ++.+. .||+|++|++
T Consensus 631 ~LD~~te~~i~~~l~~~~----~~~T~iiItHr--l~~~~-~~D~iivl~~ 674 (694)
T TIGR03375 631 AMDNRSEERFKDRLKRWL----AGKTLVLVTHR--TSLLD-LVDRIIVMDN 674 (694)
T ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEEecC--HHHHH-hCCEEEEEeC
Confidence 999999999999999873 57999999994 54464 6788888876
No 108
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-43 Score=323.81 Aligned_cols=198 Identities=16% Similarity=0.143 Sum_probs=164.7
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|+++.|++. . +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~--~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-------- 66 (210)
T cd03269 1 LEVENVTKRFGRV--T----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-------- 66 (210)
T ss_pred CEEEEEEEEECCE--E----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--------
Confidence 3578999999532 2 5999999999999999999999999999999999998 89999999985421
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..++ .++|++|++.+++..|+.+|+......... .....+.+.++++.+++.+... +++.+|||||||||+|
T Consensus 67 -----~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~l 139 (210)
T cd03269 67 -----AARN-RIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQF 139 (210)
T ss_pred -----HHHc-cEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-CcHhhCCHHHHHHHHH
Confidence 1333 799999999999889999999764322111 1112345677888999986554 8899999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +.++||+++++++
T Consensus 140 a~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~---~~~~~tii~~sH~~~~--~~~~~d~i~~l~~ 203 (210)
T cd03269 140 IAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL---ARAGKTVILSTHQMEL--VEELCDRVLLLNK 203 (210)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEECCCHHH--HHHhhhEEEEEeC
Confidence 999999999999999 99999999999999997 3358999999996655 8888999988875
No 109
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4e-43 Score=369.29 Aligned_cols=241 Identities=15% Similarity=0.141 Sum_probs=195.2
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhh------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
..+..|+..++.....++.+..+.+|+.++++.++.. .....+.|+++||+|+|+++..+ +|+|+||+|+
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~----il~~i~l~i~ 367 (582)
T PRK11176 292 IALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVP----ALRNINFKIP 367 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCCc----cccCceEEeC
Confidence 3567899999999999999999999999988765431 11112469999999999754333 5999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+|+.+||+||||||||||+++|+|+++ ++|+|.+||+++.+... ..+|+ .|+|++|++.+|+ .|+++|
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~---------~~~~~-~i~~v~Q~~~lf~-~Ti~~N 436 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL---------ASLRN-QVALVSQNVHLFN-DTIANN 436 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH---------HHHHh-hceEEccCceeec-chHHHH
Confidence 999999999999999999999999999 89999999997754321 22555 8999999999998 799999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+.... ....+++++.++++.+++.+.+. +.| ..||||||||++|||||+++|++||||| +|
T Consensus 437 i~~~~----~~~~~~~~i~~al~~~~l~~~i~-~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaL 511 (582)
T PRK11176 437 IAYAR----TEQYSREQIEEAARMAYAMDFIN-KMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511 (582)
T ss_pred HhcCC----CCCCCHHHHHHHHHHhCcHHHHH-hcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccC
Confidence 95421 11234567777888887765433 222 3499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.+...+.+.|.++. .++|+|+|||++.. +. .||+|+++++
T Consensus 512 D~~t~~~i~~~l~~~~----~~~tvI~VtHr~~~--~~-~~D~Ii~l~~ 553 (582)
T PRK11176 512 DTESERAIQAALDELQ----KNRTSLVIAHRLST--IE-KADEILVVED 553 (582)
T ss_pred CHHHHHHHHHHHHHHh----CCCEEEEEecchHH--HH-hCCEEEEEEC
Confidence 9999999999999872 47999999995533 54 5888888876
No 110
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-42 Score=348.63 Aligned_cols=239 Identities=17% Similarity=0.152 Sum_probs=186.5
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhh------hhhcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMER------LALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
+.+..|+..++.....+.++..-+.......+.+. .+....++.|+|+||+++|+++.+ +|+++||+|+
T Consensus 302 ~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~dV~f~y~~k~~-----iL~gvsf~I~ 376 (591)
T KOG0057|consen 302 FQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFDDVHFSYGPKRK-----VLKGVSFTIP 376 (591)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEEeeEEEeCCCCc-----eecceeEEec
Confidence 33445555555555444433333322222211111 123334567999999999986542 6999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
+||.+||+|+|||||||++|+|.++++.+|+|++||+++++... ..+|+ .|||||||..||+ .||..||
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~---------~SlR~-~Ig~VPQd~~LFn-dTIl~NI 445 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSL---------ESLRQ-SIGVVPQDSVLFN-DTILYNI 445 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhCh---------HHhhh-heeEeCCcccccc-hhHHHHh
Confidence 99999999999999999999999999999999999998865442 23676 8999999999998 7999999
Q ss_pred HHHHhhhhcCccccccccccCccccccccccccccCC-----------CccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 177 EELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-----------SPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----------LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
.+ +......+++.++.+++++.+.+. +.|.+ |||||||||+||||++++|+|+++|| +||
T Consensus 446 ~Y-----Gn~sas~eeV~e~~k~a~~hd~i~-~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD 519 (591)
T KOG0057|consen 446 KY-----GNPSASDEEVVEACKRAGLHDVIS-RLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALD 519 (591)
T ss_pred hc-----CCCCcCHHHHHHHHHHcCcHHHHH-hccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccc
Confidence 54 345556778888999999987666 66554 99999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.+++..+++.+.+.. .|+|+|+|.|++++ +.. +|+|+++++
T Consensus 520 ~~TE~~i~~~i~~~~----~~rTvI~IvH~l~l--l~~-~DkI~~l~n 560 (591)
T KOG0057|consen 520 SETEREILDMIMDVM----SGRTVIMIVHRLDL--LKD-FDKIIVLDN 560 (591)
T ss_pred hhhHHHHHHHHHHhc----CCCeEEEEEecchh--Hhc-CCEEEEEEC
Confidence 999999999999853 68999999996555 775 566666665
No 111
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=6.4e-43 Score=328.10 Aligned_cols=202 Identities=16% Similarity=0.100 Sum_probs=164.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 ~l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~---- 70 (236)
T TIGR03864 1 ALEVAGLSFAYGAR--R----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR---- 70 (236)
T ss_pred CEEEEeeEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh----
Confidence 36788999999642 2 5999999999999999999999999999999999998 89999999986542210
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..++ .++|++|++.+++.+|+.+|+......... .....+.+.++++.+|+.+.+. +++.+||||||||++
T Consensus 71 ------~~~~-~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~ 142 (236)
T TIGR03864 71 ------AALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERAD-DKVRELNGGHRRRVE 142 (236)
T ss_pred ------hhhh-hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHH
Confidence 1222 799999999888889999999654321110 0112234667888899986654 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. +++|.|+|++|||++. +.. ||++++|++
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~~-~d~i~~l~~ 207 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC--RDQGLSVLWATHLVDE--IEA-DDRLVVLHR 207 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH--HhCCCEEEEEecChhh--Hhh-CCEEEEEeC
Confidence 9999999999999999 999999999999999983 3358999999997666 764 899988876
No 112
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.4e-43 Score=376.98 Aligned_cols=240 Identities=16% Similarity=0.150 Sum_probs=194.8
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh--------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
.++..|+.+++.+...++.+..+.+|+.++++.++... ....+.|+++||+|+|+.+. + +|+|+||+
T Consensus 422 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-~----iL~~isl~ 496 (708)
T TIGR01193 422 SYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGS-N----ILSDISLT 496 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCC-c----ceeceeEE
Confidence 46778999999999999999999999999987654311 11234689999999997432 2 69999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++|+.+||+||||||||||+++|+|+++ ++|+|++||.++.+.. ...+|+ ++|||+|++.+|+ .|++
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~---------~~~lr~-~i~~v~Q~~~lf~-gTI~ 565 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID---------RHTLRQ-FINYLPQEPYIFS-GSIL 565 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcC---------HHHHHH-heEEEecCceehh-HHHH
Confidence 99999999999999999999999999999 8999999999775433 223665 8999999999998 7999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccc------c----cccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE------I----DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~------~----~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
||+.... ....+++++.++++.+++.+++. + .....||||||||++|||||+++|++||||| +
T Consensus 566 eNi~l~~----~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~ 641 (708)
T TIGR01193 566 ENLLLGA----KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641 (708)
T ss_pred HHHhccC----CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence 9996421 12234456677777777765433 0 2234599999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.++..+.+.|+++ +|+|+|+|||++ +.+. .+|+|++|++
T Consensus 642 LD~~te~~i~~~L~~~-----~~~T~IiitHr~--~~~~-~~D~i~~l~~ 683 (708)
T TIGR01193 642 LDTITEKKIVNNLLNL-----QDKTIIFVAHRL--SVAK-QSDKIIVLDH 683 (708)
T ss_pred CCHHHHHHHHHHHHHh-----cCCEEEEEecch--HHHH-cCCEEEEEEC
Confidence 9999999999999875 478999999954 4364 6888888876
No 113
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=327.93 Aligned_cols=205 Identities=16% Similarity=0.135 Sum_probs=167.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. .. +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~-~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----- 70 (242)
T cd03295 1 IEFENVTKRYGGG-KK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP----- 70 (242)
T ss_pred CEEEEEEEEeCCc-ce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh-----
Confidence 3578999999752 22 5999999999999999999999999999999999999 89999999986642211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccc-cccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKN-DAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSGGqkQRva 223 (382)
..+++ .++|++|++.+|+.+|+.+|+.+........ ....+.+.++++.+++.+ ...++++.+|||||||||+
T Consensus 71 ----~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~ 145 (242)
T cd03295 71 ----VELRR-KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVG 145 (242)
T ss_pred ----HHhhc-ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHH
Confidence 11343 7999999999998899999997643221111 112245677888999985 2334899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 146 laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~--~~~g~tvii~sH~~~~--~~~~~d~i~~l~~ 211 (242)
T cd03295 146 VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ--QELGKTIVFVTHDIDE--AFRLADRIAIMKN 211 (242)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999 999999999999999983 3348999999996554 8889999999986
No 114
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-42 Score=350.95 Aligned_cols=248 Identities=14% Similarity=0.096 Sum_probs=203.0
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhhh-------hcCcCch--hHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA-------LIAPDGL--NELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
|.+|++.++..+++-.++.++.+.+..+++.+... .....+- ++++|+++.|++++ + +++|+||++
T Consensus 270 ff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~----~l~~l~~t~ 344 (559)
T COG4988 270 FFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-P----ALSDLNLTI 344 (559)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-c----ccCCceeEe
Confidence 67899999999999999988889999888887641 1112223 44559999998875 2 699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++|+.+||||+||||||||+++|+|+.+ ++|+|.+||.++.+.+.. .+|+ +++||+|+|.+|+ .|++|
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~---------~~~k-~i~~v~Q~p~lf~-gTire 413 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPE---------AWRK-QISWVSQNPYLFA-GTIRE 413 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHH---------HHHh-HeeeeCCCCcccc-ccHHH
Confidence 9999999999999999999999999999 999999999987655432 2564 9999999999998 79999
Q ss_pred hHHHHHhhhhcCccccccccccCccccccccccc-----cccC----CCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEI-----DDLK----SSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~----~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
|+.+. .....++.+.++++.+++.++..+ ..+. .|||||+|||++||||+.+++++|+|| +||
T Consensus 414 Ni~l~-----~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD 488 (559)
T COG4988 414 NILLA-----RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488 (559)
T ss_pred Hhhcc-----CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCC
Confidence 99543 344567788889999998876651 1122 399999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
.+++..|++.|.++. +++|+|+|||++.. +. -+|+|++|++ +..+..++.+
T Consensus 489 ~etE~~i~~~l~~l~----~~ktvl~itHrl~~--~~-~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 489 AETEQIILQALQELA----KQKTVLVITHRLED--AA-DADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HhHHHHHHHHHHHHH----hCCeEEEEEcChHH--Hh-cCCEEEEecCCceeccCCHHHHh
Confidence 999999999999984 56999999994443 65 4677777776 6666665554
No 115
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-43 Score=331.62 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=167.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++|+++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~~~~~------il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~------ 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGERT------VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA------ 77 (257)
T ss_pred CCcEEEEEEEEEECCcc------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH------
Confidence 45799999999996432 5999999999999999999999999999999999998 8999999887431
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.++ +.++|++|++.+|+..|+.+|+.+.. .. ...+++.++++.+++.+... +++.+|||||||||
T Consensus 78 --------~~~-~~i~~v~q~~~l~~~~tv~enl~~~~----~~-~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqrl 142 (257)
T PRK11247 78 --------EAR-EDTRLMFQDARLLPWKKVIDNVGLGL----KG-QWRDAALQALAAVGLADRAN-EWPAALSGGQKQRV 142 (257)
T ss_pred --------Hhh-CceEEEecCccCCCCCcHHHHHHhcc----cc-hHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHH
Confidence 123 37999999999998899999996531 01 12345677889999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +..+||+++++++
T Consensus 143 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~~~tviivsHd~~~--~~~~~d~i~~l~~ 209 (257)
T PRK11247 143 ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW--QQHGFTVLLVTHDVSE--AVAMADRVLLIEE 209 (257)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999 999999999999999973 3458999999996665 8889999999976
No 116
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.1e-42 Score=328.73 Aligned_cols=203 Identities=18% Similarity=0.146 Sum_probs=165.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~~ 139 (382)
+++++|++++|+... +|+|+||+|++||+++|+||||||||||+++|+|+++ + +|+|+++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYGEKE------ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEECCee------eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 467899999996432 5999999999999999999999999999999999998 7 999999998764211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCcccccc----ccccccccCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMK----NDAEIDDLKS 213 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~----~~~~~~~~~~ 213 (382)
......++ .++|+||++.+|+ .|+.+|+.+....... . ....+.+.++++.+|+. +.. ++++.+
T Consensus 75 -------~~~~~~~~-~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 144 (247)
T TIGR00972 75 -------IDVVELRR-RVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRL-HDSALG 144 (247)
T ss_pred -------cchHHHHh-heEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHh-hCCccc
Confidence 01112343 8999999999998 9999999754321110 0 11124566788889997 444 488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.++|+++. + +.|||+||||++. +..+||++++|++
T Consensus 145 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tiiivsH~~~~--~~~~~d~i~~l~~ 218 (247)
T TIGR00972 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK---K-KYTIVIVTHNMQQ--AARISDRTAFFYD 218 (247)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---h-cCeEEEEecCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999 999999999999999983 3 4899999996555 8889999999986
No 117
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=329.88 Aligned_cols=206 Identities=13% Similarity=0.117 Sum_probs=167.8
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|+++.|++. + +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 4 ~~l~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--- 74 (255)
T PRK11300 4 PLLSVSGLMMRFGGL--L----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG--- 74 (255)
T ss_pred ceEEEeeEEEEECCE--E----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCH---
Confidence 478999999999642 2 5999999999999999999999999999999999999 89999999987643211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-------h-cC------c--cccccccccCcccccccccc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-------S-EG------V--HHNQRCLRSDDCALMKNDAE 207 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-------~-~~------~--~~~~~~~~~l~~~~L~~~~~ 207 (382)
.. .++..++|+||++.+|+.+|+.+|+.+..... . .. . ...+.+.++++.+|+.+...
T Consensus 75 ---~~---~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 148 (255)
T PRK11300 75 ---HQ---IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN 148 (255)
T ss_pred ---HH---HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhh
Confidence 11 12236899999999999899999997642100 0 00 0 01124556788899976654
Q ss_pred ccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
+++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|.++. ++.|.|||++|||++. +..+||+
T Consensus 149 -~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~--~~~~~tii~~sH~~~~--~~~~~d~ 223 (255)
T PRK11300 149 -RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELR--NEHNVTVLLIEHDMKL--VMGISDR 223 (255)
T ss_pred -CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH--hhcCCEEEEEeCCHHH--HHHhCCE
Confidence 9999999999999999999999999999999 999999999999999983 3348999999996555 8889999
Q ss_pred hhhhhh
Q 016817 285 LKICEY 290 (382)
Q Consensus 285 v~ll~~ 290 (382)
++++++
T Consensus 224 i~~l~~ 229 (255)
T PRK11300 224 IYVVNQ 229 (255)
T ss_pred EEEEEC
Confidence 999876
No 118
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-43 Score=328.71 Aligned_cols=204 Identities=13% Similarity=0.098 Sum_probs=167.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|.++...+.
T Consensus 3 ~l~~~~l~~~~~~~--~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---- 72 (241)
T PRK10895 3 TLTAKNLAKAYKGR--R----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL---- 72 (241)
T ss_pred eEEEeCcEEEeCCE--E----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----
Confidence 67889999999642 2 5999999999999999999999999999999999998 89999999987643211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
. ...|+ .++|++|++.+++.+|+.+|+......... .....+.+.++++.+++.+... +++.+|||||||||
T Consensus 73 --~--~~~~~-~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv 146 (241)
T PRK10895 73 --H--ARARR-GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD-SMGQSLSGGERRRV 146 (241)
T ss_pred --H--HHHHh-CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhh-cchhhCCHHHHHHH
Confidence 1 11233 799999999999889999999654211110 1111234667788889976544 88999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.++++ .++|.|||++|||++. +.++||+++++++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~g~tiii~sH~~~~--~~~~~d~v~~l~~ 212 (241)
T PRK10895 147 EIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL---RDSGLGVLITDHNVRE--TLAVCERAYIVSQ 212 (241)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhcCCEEEEEEcCHHH--HHHhcCEEEEEeC
Confidence 99999999999999999 99999999999999987 3468999999996654 8889999999876
No 119
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.2e-42 Score=321.99 Aligned_cols=210 Identities=17% Similarity=0.111 Sum_probs=164.4
Q ss_pred hhHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++||+++|++.. .+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-- 74 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVK----ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSR-- 74 (228)
T ss_pred CeEEEeeeEeccCCCccee----eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccch--
Confidence 367889999996431 12 5999999999999999999999999999999999998 89999999987643211
Q ss_pred eehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcCcccc--cc-ccccCccccccccccccccCCCccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEGVHHN--QR-CLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~--~~-~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
.....+|+ .++|++|++ .+++.+|+.+|+.+............ +. +.++++.+++.....++++.+||||
T Consensus 75 ----~~~~~~~~-~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 149 (228)
T cd03257 75 ----RLRKIRRK-EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGG 149 (228)
T ss_pred ----hhHHHhhc-cEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHH
Confidence 01112343 899999998 46667899999975432211111111 11 2367788888532234899999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~~~d~i~~l~~ 221 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQ--EELGLTLLFITHDLGV--VAKIADRVAVMYA 221 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhcCeEEEEeC
Confidence 9999999999999999999999 999999999999999983 3348999999996655 8888999998875
No 120
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=345.13 Aligned_cols=214 Identities=15% Similarity=0.092 Sum_probs=172.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+.....
T Consensus 1 ~l~~-~l~k~~~~~-------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~-- 69 (352)
T PRK11144 1 MLEL-NFKQQLGDL-------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI-- 69 (352)
T ss_pred CeEE-EEEEEeCCE-------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc--
Confidence 3556 889999542 14 8999999999999999999999999999999998 8999999998764321100
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.....+ +.+||+||++.+|+++|+.+|+.+... ....+++.++++.+++.+..+ ++|.+|||||||||+|
T Consensus 70 ---~~~~~~-~~i~~v~q~~~l~~~~tv~enl~~~~~-----~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qRval 139 (352)
T PRK11144 70 ---CLPPEK-RRIGYVFQDARLFPHYKVRGNLRYGMA-----KSMVAQFDKIVALLGIEPLLD-RYPGSLSGGEKQRVAI 139 (352)
T ss_pred ---ccchhh-CCEEEEcCCcccCCCCcHHHHHHhhhh-----hhhHHHHHHHHHHcCCchhhh-CCcccCCHHHHHHHHH
Confidence 011123 389999999999999999999965321 122345778899999986654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
||||+.+|++||||| +||+.++..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++++
T Consensus 140 araL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~--~~~g~tii~vTHd~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 140 GRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA--REINIPILYVSHSLDE--ILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCeEEEEecCHHH--HHHhCCEEEEEeCCEEEEecCHHH
Confidence 999999999999999 999999999999999983 4458999999996554 8899999999987 44555566
Q ss_pred eeeEEE
Q 016817 299 VYDIVC 304 (382)
Q Consensus 299 v~~~~~ 304 (382)
++..+.
T Consensus 216 i~~~p~ 221 (352)
T PRK11144 216 VWASSA 221 (352)
T ss_pred HHhCcc
Confidence 665443
No 121
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.2e-42 Score=330.27 Aligned_cols=220 Identities=17% Similarity=0.157 Sum_probs=172.4
Q ss_pred hhHHHHHhhhcccC-------CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCC
Q 016817 66 LNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN 137 (382)
Q Consensus 66 ~i~i~nvs~~y~~~-------~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~ 137 (382)
+++++||+++|+.+ ... +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAP----VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEeccCccccccCceE----EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 57889999999632 222 5999999999999999999999999999999999999 89999999987643
Q ss_pred cccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccCC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
.. ..+...+|+ .++|+||++ .+++..|+.+|+.+...... ......+++.++++.+|+.+...++++.+
T Consensus 78 ~~------~~~~~~~~~-~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 150 (265)
T TIGR02769 78 LD------RKQRRAFRR-DVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ 150 (265)
T ss_pred cC------HHHHHHHhh-ceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh
Confidence 21 112222343 799999996 46677899999865432111 11112345677889999963333489999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +..+||+++++++
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tiiivsH~~~~--~~~~~d~i~~l~~ 226 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQ--QAFGTAYLFITHDLRL--VQSFCQRVAVMDK 226 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEeCCHHH--HHHHhcEEEEEeC
Confidence 99999999999999999999999999 999999999999999983 3348999999996665 8889999999976
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..+++++++
T Consensus 227 G~i~~~g~~~~~~ 239 (265)
T TIGR02769 227 GQIVEECDVAQLL 239 (265)
T ss_pred CEEEEECCHHHHc
Confidence 3344444443
No 122
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-43 Score=333.74 Aligned_cols=216 Identities=14% Similarity=0.093 Sum_probs=169.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|++++||+++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 ml~~~~l~~~~~~~~------il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----- 69 (271)
T PRK13638 1 MLATSDLWFRYQDEP------VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK----- 69 (271)
T ss_pred CeEEEEEEEEcCCcc------cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEccccc-----
Confidence 477899999996432 6999999999999999999999999999999999999 8999999998763110
Q ss_pred hhhhhhhHhhhccceeeEeCCC-CChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRG-FNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l-~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.....+|+ .+||++|++.+ +...++.+|+.+.....+... ...+++.++++.+++.+.. ++++.+||||||||+
T Consensus 70 --~~~~~~~~-~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl 145 (271)
T PRK13638 70 --RGLLALRQ-QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-HQPIQCLSHGQKKRV 145 (271)
T ss_pred --CCHHHHHh-heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-cCCchhCCHHHHHHH
Confidence 01112343 79999999753 334678888865422111111 1123456788889998655 489999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||+||||++. +..+||+++++++ +..+++
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~g~tii~vtH~~~~--~~~~~d~i~~l~~G~i~~~g~~ 220 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI---VAQGNHVIISSHDIDL--IYEISDAVYVLRQGQILTHGAP 220 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999 99999999999999998 3358999999996665 8889999999976 344555
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
.+++.
T Consensus 221 ~~~~~ 225 (271)
T PRK13638 221 GEVFA 225 (271)
T ss_pred HHHhc
Confidence 55554
No 123
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-43 Score=334.64 Aligned_cols=217 Identities=18% Similarity=0.105 Sum_probs=171.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.....
T Consensus 1 ml~~~~l~~~~~~~~-~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---- 71 (274)
T PRK13644 1 MIRLENVSYSYPDGT-P----ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK---- 71 (274)
T ss_pred CEEEEEEEEEcCCCC-c----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcccc----
Confidence 467899999995322 1 6999999999999999999999999999999999999 89999999987643210
Q ss_pred hhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
...+++ .+||++|++. .+...|+.+|+.+.....+. .....+.+.++++.+|+.+... +++.+|||||||||
T Consensus 72 ----~~~~~~-~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv 145 (274)
T PRK13644 72 ----LQGIRK-LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-RSPKTLSGGQGQCV 145 (274)
T ss_pred ----HHHHHh-heEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CCcccCCHHHHHHH
Confidence 112333 7999999975 35558999999754322111 1112345677888999986655 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+++.|+++ ++.|.|||++|||++. +. .||+++++++ +..+++
T Consensus 146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l---~~~g~til~~tH~~~~--~~-~~d~v~~l~~G~i~~~g~~ 219 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL---HEKGKTIVYITHNLEE--LH-DADRIIVMDRGKIVLEGEP 219 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEecCHHH--Hh-hCCEEEEEECCEEEEECCH
Confidence 99999999999999999 99999999999999998 3458999999997665 74 5899998876 444555
Q ss_pred cceeeEE
Q 016817 297 SGVYDIV 303 (382)
Q Consensus 297 ~~v~~~~ 303 (382)
++++..+
T Consensus 220 ~~~~~~~ 226 (274)
T PRK13644 220 ENVLSDV 226 (274)
T ss_pred HHHhcCh
Confidence 5665443
No 124
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.1e-42 Score=365.62 Aligned_cols=237 Identities=15% Similarity=0.131 Sum_probs=194.9
Q ss_pred ccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCce
Q 016817 26 AAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (382)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G 98 (382)
..|+..+......+..+..+.+|+.++++.++... ....+.|+++||+|+|+++..+ +|+|+||++++|
T Consensus 291 ~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~----il~~i~~~i~~G 366 (574)
T PRK11160 291 FEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQP----VLKGLSLQIKAG 366 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCCCc----ceecceEEECCC
Confidence 46788888888888889999999999998765311 1123469999999999754333 599999999999
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
|+++|+||||||||||+++|+|+++ ++|+|++||+++.+.+. ..+|+ .++||+|++.+|+ .|++||+.
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~---------~~~r~-~i~~v~Q~~~lf~-~ti~~Ni~ 435 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE---------AALRQ-AISVVSQRVHLFS-ATLRDNLL 435 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH---------HHHHh-heeEEcccchhhc-ccHHHHhh
Confidence 9999999999999999999999999 89999999998764432 22555 8999999999998 79999995
Q ss_pred HHHhhhhcCccccccccccCcccccccccccc----------ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCC
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEID----------DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSK 244 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~----------~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~ 244 (382)
.. .+...++++.++++.+++.+++. + ....||||||||++|||||+++|++||||| +||+.
T Consensus 436 ~~-----~~~~~~~~i~~al~~~~l~~~i~-~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 436 LA-----APNASDEALIEVLQQVGLEKLLE-DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred cC-----CCccCHHHHHHHHHHcCCHHHHc-CccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 43 22345567788888888887654 3 334599999999999999999999999999 99999
Q ss_pred cchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 245 PLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 245 ~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++..+.+.|.++. +++|+|+||| +++++.. +|+|+++++
T Consensus 510 t~~~i~~~l~~~~----~~~tviiitH--r~~~~~~-~d~i~~l~~ 548 (574)
T PRK11160 510 TERQILELLAEHA----QNKTVLMITH--RLTGLEQ-FDRICVMDN 548 (574)
T ss_pred HHHHHHHHHHHHc----CCCEEEEEec--ChhHHHh-CCEEEEEeC
Confidence 9999999999873 5899999999 5554764 788888876
No 125
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-42 Score=320.47 Aligned_cols=199 Identities=17% Similarity=0.060 Sum_probs=163.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|++ . ..|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 i~~~~l~~~~~~-~-------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~----- 67 (211)
T cd03298 1 VRLDKIRFSYGE-Q-------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP----- 67 (211)
T ss_pred CEEEeEEEEeCC-E-------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH-----
Confidence 457899999953 2 239999999999999999999999999999999999 89999999987642211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.++|++|++.+|+.+|+.+|+.+....... ....++++.++++.+++.+... +++.+||||||||++|
T Consensus 68 ------~~-~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~i 139 (211)
T cd03298 68 ------AD-RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-RLPGELSGGERQRVAL 139 (211)
T ss_pred ------hH-ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHHHHHHH
Confidence 12 3799999999999889999999653211000 1112345677899999986654 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 140 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~~~d~i~~l~~ 204 (211)
T cd03298 140 ARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH--AETKMTVLMVTHQPED--AKRLAQRVVFLDN 204 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHhhhCEEEEEEC
Confidence 999999999999999 999999999999999983 3458999999996655 8888999998875
No 126
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-43 Score=328.79 Aligned_cols=214 Identities=11% Similarity=0.070 Sum_probs=169.6
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|+... +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 4 ~~l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--- 74 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQ------ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT--- 74 (237)
T ss_pred cEEEEEeEEEeeCCce------eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH---
Confidence 4788999999996432 6999999999999999999999999999999999999 89999999987643211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-cccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-LMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~LSGGqkQRv 222 (382)
. ...+ +.++|++|++.+|+..|+.+|+....... ......+.+.++++.+ ++.+... +++.+|||||||||
T Consensus 75 ---~--~~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrl 146 (237)
T PRK11614 75 ---A--KIMR-EAVAIVPEGRRVFSRMTVEENLAMGGFFA-ERDQFQERIKWVYELFPRLHERRI-QRAGTMSGGEQQML 146 (237)
T ss_pred ---H--HHHH-hCEEEeccCcccCCCCcHHHHHHHhhhcc-ChhHHHHHHHHHHHHHHHHHHHHh-CchhhCCHHHHHHH
Confidence 1 1123 37999999999998889999997542111 1111123345566777 4665444 88999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +.++||+++++++ +..+++
T Consensus 147 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~G~i~~~~~~ 221 (237)
T PRK11614 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL---REQGMTIFLVEQNANQ--ALKLADRGYVLENGHVVLEDTG 221 (237)
T ss_pred HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCcHHH--HHhhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999 99999999999999998 3358999999996554 8889999999976 334444
Q ss_pred ccee
Q 016817 297 SGVY 300 (382)
Q Consensus 297 ~~v~ 300 (382)
++++
T Consensus 222 ~~~~ 225 (237)
T PRK11614 222 DALL 225 (237)
T ss_pred HHHh
Confidence 4443
No 127
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.2e-42 Score=372.33 Aligned_cols=247 Identities=16% Similarity=0.148 Sum_probs=201.8
Q ss_pred cchhhhhhhccCCCCccccchhHHHHHHhhhh-h--------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCc
Q 016817 27 AKFDECVKLKLDLPNVSTLTPRLRVLREMERL-A--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPP 97 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~ 97 (382)
+-+.++..+..++..+..+..++..+++.++. . .+.-.+.|+++||+|+|+..... ++|+|+||+|++
T Consensus 939 ~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~---~Il~~l~l~i~~ 1015 (1228)
T KOG0055|consen 939 MALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDV---PVLNNLSLSIRA 1015 (1228)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCc---hhhcCCcEEecC
Confidence 34556667777888888999999999998862 1 11224579999999999865432 379999999999
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
|+.+||||||||||||.+.+|-++|+ ++|.|.+||+|+++++.. .+|+ ++|.|.|+|.||. .|++|||
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~---------~LR~-~i~lVsQEP~LF~-~TIrENI 1084 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLK---------WLRK-QIGLVSQEPVLFN-GTIRENI 1084 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHH---------HHHH-hcceeccCchhhc-ccHHHHH
Confidence 99999999999999999999999999 899999999998766532 3676 9999999999998 8999999
Q ss_pred HHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 177 EELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
.++. .. ...+++.++++.+++.+++. ..|. +||||||||+|||||+++||+|||||| +||
T Consensus 1085 ~YG~----~~-vs~~eIi~Aak~ANaH~FI~-sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALD 1158 (1228)
T KOG0055|consen 1085 AYGS----EE-VSEEEIIEAAKLANAHNFIS-SLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALD 1158 (1228)
T ss_pred hccC----CC-CCHHHHHHHHHHhhhHHHHh-cCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhh
Confidence 6541 12 45567788888887766554 3333 599999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
.++++.+++.|.+.. .|+|.|+|+| +++++.+ ||.|+++++ ++.|..++++
T Consensus 1159 seSErvVQeALd~a~----~gRT~IvIAH--RLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1159 SESERVVQEALDRAM----EGRTTIVIAH--RLSTIQN-ADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred hhhHHHHHHHHHHhh----cCCcEEEEec--chhhhhc-CCEEEEEECCEEEecccHHHHH
Confidence 999999999999973 6899999999 8988886 566666665 5556555554
No 128
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9e-43 Score=367.49 Aligned_cols=248 Identities=15% Similarity=0.127 Sum_probs=200.3
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-----cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCc
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPP 97 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~ 97 (382)
.++..|+.+++.....+..+..+.+|+.++++.++.+. ....+.|+++|++|+|+++. + +|+|+||+|++
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~----il~~i~l~i~~ 366 (592)
T PRK10790 292 GRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDN-L----VLQNINLSVPS 366 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCC-c----eeeceeEEEcC
Confidence 36789999999999999999999999999987654311 11234699999999997432 2 59999999999
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
||.+||+|+||||||||+++|+|+++ ++|+|.+||.++.+... ..+|+ +|+|++|++.+|+ .|+++|+
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~---------~~l~~-~i~~v~Q~~~lF~-~Ti~~NI 435 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH---------SVLRQ-GVAMVQQDPVVLA-DTFLANV 435 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCH---------HHHHh-heEEEccCCcccc-chHHHHH
Confidence 99999999999999999999999999 89999999997754332 22555 9999999999998 6999999
Q ss_pred HHHHhhhhcCccccccccccCccccccccccccc-----------cCCCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 177 EELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-----------LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
... . ..+++++.++++.+|+.+.+. +. ...||||||||++|||||+.+|+|||||| +||
T Consensus 436 ~~~-----~-~~~d~~i~~a~~~~gl~~~i~-~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD 508 (592)
T PRK10790 436 TLG-----R-DISEEQVWQALETVQLAELAR-SLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508 (592)
T ss_pred HhC-----C-CCCHHHHHHHHHHcCcHHHHH-hccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 643 2 234566778888888775443 33 24599999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
+.+.+.+.+.|+++. .++|+|+|||++ +... .+|+|++|++ +..|+.++++
T Consensus 509 ~~t~~~i~~~l~~~~----~~~tvIivtHr~--~~l~-~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 509 SGTEQAIQQALAAVR----EHTTLVVIAHRL--STIV-EADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHHHHHHh----CCCEEEEEecch--HHHH-hCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999873 469999999955 3355 5888888876 4444444443
No 129
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=334.84 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=171.2
Q ss_pred hhHHHHHhhhcccCC---eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~---~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+|+++|++++|+++. +. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~----~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~- 76 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKK----GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETG- 76 (287)
T ss_pred EEEEEEEEEEcCCCCCcccc----ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc-
Confidence 367899999996421 12 6999999999999999999999999999999999999 89999999987642110
Q ss_pred eeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc-CccccccccccCcccccc-ccccccccCCCccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMK-NDAEIDDLKSSPKY 217 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSGG 217 (382)
.......+. .+||+||++ .+| .+|+.+|+.+....... .....+++.++++.+|+. +.. ++++.+||||
T Consensus 77 ----~~~~~~~~~-~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~~LSgG 149 (287)
T PRK13641 77 ----NKNLKKLRK-KVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-SKSPFELSGG 149 (287)
T ss_pred ----cchHHHHHh-ceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-hCCcccCCHH
Confidence 001112333 799999997 355 47999999754321111 111224567788999996 444 4999999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---c
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---L 291 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~ 291 (382)
|||||+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||++|||++. +.++||+++++++ +
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l---~~~g~tvlivsH~~~~--~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY---QKAGHTVILVTHNMDD--VAEYADDVLVLEHGKLI 224 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEE
Confidence 9999999999999999999999 99999999999999998 3458999999996665 8899999999986 3
Q ss_pred ccccccceee
Q 016817 292 GVSEISGVYD 301 (382)
Q Consensus 292 ~~~~~~~v~~ 301 (382)
..+++++++.
T Consensus 225 ~~g~~~~~~~ 234 (287)
T PRK13641 225 KHASPKEIFS 234 (287)
T ss_pred EeCCHHHHhc
Confidence 4455555543
No 130
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.4e-42 Score=373.08 Aligned_cols=248 Identities=14% Similarity=0.097 Sum_probs=196.0
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-----c--CcCchhHHHHHhhhcccCC-eeeecCCcccCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----I--APDGLNELRHKFLSYRSGD-FWIPIGGIQKGGMD 94 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~i~i~nvs~~y~~~~-~~v~~~vL~~isl~ 94 (382)
.++..|+..++.....+.++..+.+|+.++++.++... . ...+.|+++||+|+|++.. .+ +|+|+||+
T Consensus 428 ~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~----vL~~isl~ 503 (711)
T TIGR00958 428 EQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVP----VLKGLTFT 503 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCc----cccCceEE
Confidence 35778999999999999999999999999987765311 0 1234699999999997532 22 69999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++||+++|+||||||||||+++|+|+++ ++|+|.+||+++.+... ..+|+ +|+||+|++.+|+ .|++
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~---------~~lr~-~i~~v~Q~~~lF~-gTIr 572 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH---------HYLHR-QVALVGQEPVLFS-GSVR 572 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH---------HHHHh-hceEEecCccccc-cCHH
Confidence 99999999999999999999999999999 89999999998754432 22554 8999999999998 8999
Q ss_pred hhHHHHHhhhhcCccccccccccCccccccccccccc-----------cCCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-----------LKSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
||+.+. .....++++.++++.+++.+++. +. ..+||||||||++|||||+++|+||||||
T Consensus 573 eNI~~g-----~~~~~~e~i~~al~~a~l~~~i~-~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTS 646 (711)
T TIGR00958 573 ENIAYG-----LTDTPDEEIMAAAKAANAHDFIM-EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATS 646 (711)
T ss_pred HHHhcC-----CCCCCHHHHHHHHHHcCCHHHHH-hCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcccc
Confidence 999543 22234556777788777765443 22 24599999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
+||++++..+.+ ... ..++|+|+||| +++.+. .+|+|+++++ +..|+.++++
T Consensus 647 aLD~~te~~i~~-~~~-----~~~~TvIiItH--rl~~i~-~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 647 ALDAECEQLLQE-SRS-----RASRTVLLIAH--RLSTVE-RADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred ccCHHHHHHHHH-hhc-----cCCCeEEEEec--cHHHHH-hCCEEEEEECCEEEEeeCHHHHH
Confidence 999999999988 222 25899999999 454465 5788888876 4445444443
No 131
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=335.15 Aligned_cols=216 Identities=14% Similarity=0.111 Sum_probs=172.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++||+++|+....+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...+
T Consensus 4 ~~l~~~~l~~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~---- 75 (279)
T PRK13635 4 EIIRVEHISFRYPDAATY----ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEET---- 75 (279)
T ss_pred ceEEEEEEEEEeCCCCcc----ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCc----
Confidence 478999999999643222 6999999999999999999999999999999999999 8999999999764321
Q ss_pred ehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
. ..+++ .+||+||++. +++..|+.+|+.+....... .....+++.++++.+||.+... +.|.+||||||||
T Consensus 76 --~---~~~~~-~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qr 148 (279)
T PRK13635 76 --V---WDVRR-QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-REPHRLSGGQKQR 148 (279)
T ss_pred --H---HHHhh-heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHH
Confidence 1 11333 7999999973 56668999999764322111 1111245677889999987655 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||++|||++. +. .||+++++++ +..++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~--~~~~~tilivsH~~~~--~~-~~d~i~~l~~G~i~~~g~ 223 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK--EQKGITVLSITHDLDE--AA-QADRVIVMNKGEILEEGT 223 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HcCCCEEEEEecCHHH--HH-cCCEEEEEECCEEEEECC
Confidence 999999999999999999 999999999999999983 3348999999997665 76 4889888876 34444
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
+++++
T Consensus 224 ~~~~~ 228 (279)
T PRK13635 224 PEEIF 228 (279)
T ss_pred HHHHh
Confidence 44444
No 132
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2e-42 Score=327.80 Aligned_cols=212 Identities=13% Similarity=0.114 Sum_probs=168.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcc--cce-
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSS--HTI- 142 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~--~~~- 142 (382)
|+++||+++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGIL--T----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCCe--e----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 4678999999643 2 5999999999999999999999999999999999998 8999999998764321 000
Q ss_pred -eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-h-cCccccccccccCccccccccccccccCCCcccee
Q 016817 143 -TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-S-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 143 -~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.........+++ .++|+||++.+|+..|+.+|+.+..... . ......+.+.++++.+|+.+... +.+.+|||||+
T Consensus 75 ~~~~~~~~~~~~~-~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~ 152 (252)
T TIGR03005 75 VPADEKHLRQMRN-KIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-HMPAQLSGGQQ 152 (252)
T ss_pred cccchhHHHHHhh-CeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-cChhhcCHHHH
Confidence 000011122344 8999999999998899999997542111 1 01111234667888999986654 89999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|+|+||||++. +..++|+++++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tiiivsH~~~~--~~~~~d~i~~l~~ 222 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLA--SEHDLTMLLVTHEMGF--AREFADRVCFFDK 222 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999999 999999999999999983 3348999999996655 8888999999987
No 133
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=334.35 Aligned_cols=219 Identities=15% Similarity=0.084 Sum_probs=173.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+++|++++|+.+. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 4 ~~l~~~~l~~~~~~~~-~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~---- 74 (283)
T PRK13636 4 YILKVEELNYNYSDGT-H----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR---- 74 (283)
T ss_pred ceEEEEeEEEEeCCCC-e----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCc----
Confidence 4789999999996322 2 6999999999999999999999999999999999999 8999999998763110
Q ss_pred ehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.....+|+ .+||+||++. .+...|+.+|+.+........ ....+++.++++.+||.+.. ++++.+||||||||
T Consensus 75 ---~~~~~~~~-~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qr 149 (283)
T PRK13636 75 ---KGLMKLRE-SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKR 149 (283)
T ss_pred ---chHHHHHh-hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-hCCcccCCHHHHHH
Confidence 11122444 8999999973 223479999997643222111 11224567788999998665 49999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
++|||||+.+|++||||| +||+.++..+.++|+++. ++.|+|||++|||++. +..+||++++|++ +..++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~--~~~g~tillvsH~~~~--~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ--KELGLTIIIATHDIDI--VPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999 999999999999999983 3348999999996655 8889999999976 44555
Q ss_pred ccceee
Q 016817 296 ISGVYD 301 (382)
Q Consensus 296 ~~~v~~ 301 (382)
+++++.
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 555554
No 134
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-42 Score=327.48 Aligned_cols=216 Identities=14% Similarity=0.104 Sum_probs=169.9
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~ 136 (382)
..++++++|++++|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ + +|+|+++|+++.
T Consensus 4 ~~~~l~~~~l~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 4 NEAIIETENLNLFYTDFK------ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CCceEEEeeeEEEeCCce------eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 456899999999996432 5999999999999999999999999999999999998 4 899999998653
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCcccccc----ccccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMK----NDAEIDD 210 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~----~~~~~~~ 210 (382)
... .....+|+ .++|++|++.+|+ .|+.+|+.+....... . ....+.+.++++.+++. +.. +++
T Consensus 78 ~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~ 147 (254)
T PRK14273 78 SNN-------FDILELRR-KIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKL-NTN 147 (254)
T ss_pred ccc-------ccHHHHhh-ceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHH-hCC
Confidence 210 01112344 8999999998886 8999999764321111 0 11123456677777763 233 488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++ + ++.|||++|||++. +.++||++++
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~~~tvii~sH~~~~--~~~~~d~i~~ 221 (254)
T PRK14273 148 ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL---K-ESYTIIIVTHNMQQ--AGRISDRTAF 221 (254)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 99999999999999998 3 36899999996655 8889999999
Q ss_pred hhh---ccccccccee
Q 016817 288 CEY---LGVSEISGVY 300 (382)
Q Consensus 288 l~~---~~~~~~~~v~ 300 (382)
|++ +..+++++++
T Consensus 222 l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 222 FLNGCIEEESSTDELF 237 (254)
T ss_pred EECCEEEEeCCHHHHH
Confidence 976 3344444444
No 135
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.6e-42 Score=326.29 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=167.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 2 ~i~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---- 71 (242)
T TIGR03411 2 ILYLEGLSVSFDGF--K----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE---- 71 (242)
T ss_pred eEEEEeeEEEcCCe--E----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCH----
Confidence 67899999999642 2 5999999999999999999999999999999999998 89999999986543211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh---------cCccccccccccCccccccccccccccCCCc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS---------EGVHHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---------~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
.+ .+++.++|+||++.+|+.+|+.+|+.+...... ......+++.++++.+|+.+... +++.+||
T Consensus 72 --~~---~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS 145 (242)
T TIGR03411 72 --HQ---IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD-RLAGLLS 145 (242)
T ss_pred --HH---HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhc-CChhhCC
Confidence 11 112379999999999998999999976431100 00112345677888999986654 8999999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||+|||||+.+|++||||| +||+.++..+.+.|+++. + ++|||++|||++. +..+||+++++++
T Consensus 146 ~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tii~~sH~~~~--~~~~~d~i~~l~~ 217 (242)
T TIGR03411 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA---G-KHSVVVVEHDMEF--VRSIADKVTVLHQ 217 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh---c-CCEEEEEECCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999999999 999999999999999983 2 6899999996555 8889999999876
No 136
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=327.80 Aligned_cols=201 Identities=16% Similarity=0.156 Sum_probs=165.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~------~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----- 71 (241)
T PRK14250 3 EIEFKEVSYSSFGKE------ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID----- 71 (241)
T ss_pred eEEEEeEEEEeCCee------eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC-----
Confidence 467899999996432 5999999999999999999999999999999999998 8999999998754211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
...+|+ .++|+||++.+|+ .|+.+|+.+... . .. ...+++.++++.+++.+...++++.+|||||||||+|
T Consensus 72 ----~~~~~~-~i~~~~q~~~~~~-~tv~e~l~~~~~-~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 142 (241)
T PRK14250 72 ----VIDLRR-KIGMVFQQPHLFE-GTVKDNIEYGPM-L-KG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSI 142 (241)
T ss_pred ----hHHhhh-cEEEEecCchhch-hhHHHHHhcchh-h-cC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHH
Confidence 112343 7999999998887 699999864321 1 11 1223566778889996333348999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tii~~sH~~~~--~~~~~d~i~~l~~ 207 (241)
T PRK14250 143 ARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLK--NKMNLTVIWITHNMEQ--AKRIGDYTAFLNK 207 (241)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhCCCEEEEEeccHHH--HHHhCCEEEEEeC
Confidence 999999999999999 999999999999999983 3358999999996655 8889999999986
No 137
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.3e-42 Score=322.76 Aligned_cols=202 Identities=12% Similarity=0.063 Sum_probs=163.6
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++||++.|+.. + +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----- 69 (230)
T TIGR03410 1 LEVSNLNVYYGQS--H----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP----- 69 (230)
T ss_pred CEEEeEEEEeCCe--E----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH-----
Confidence 4578999999643 2 5999999999999999999999999999999999999 89999999987643211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccc-ccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL-MKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.. ..+ +.++|+||++.+|+.+|+.+|+.+..... .....+...++++.++ +.+.. ++++.+||||||||++|
T Consensus 70 -~~--~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LS~G~~qrv~l 142 (230)
T TIGR03410 70 -HE--RAR-AGIAYVPQGREIFPRLTVEENLLTGLAAL--PRRSRKIPDEIYELFPVLKEML-GRRGGDLSGGQQQQLAI 142 (230)
T ss_pred -HH--HHH-hCeEEeccCCcccCCCcHHHHHHHHHHhc--CcchHHHHHHHHHHHHhHHHHh-hCChhhCCHHHHHHHHH
Confidence 11 122 37999999999999889999997543211 1112233456677776 45444 48999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|.++. ++.|+|||++|||++. +..+||+++++++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~~~d~v~~l~~ 207 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLR--AEGGMAILLVEQYLDF--ARELADRYYVMER 207 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HcCCcEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 999999999999999973 3348999999996555 8889999999876
No 138
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=331.60 Aligned_cols=206 Identities=15% Similarity=0.038 Sum_probs=169.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+.+++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 9 ~~~l~i~~l~~~~~~~--~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--- 79 (265)
T PRK10575 9 DTTFALRNVSFRVPGR--T----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS--- 79 (265)
T ss_pred CceEEEeeEEEEECCE--E----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCC---
Confidence 3579999999999642 2 5999999999999999999999999999999999999 8999999998653221
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-----CccccccccccCccccccccccccccCCCccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-----GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-----~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
...+++ .++|+||++.+++.+|+.+|+.+....... .....+++.++++.+++.+... +++.+||||
T Consensus 80 ------~~~~~~-~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG 151 (265)
T PRK10575 80 ------SKAFAR-KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-RLVDSLSGG 151 (265)
T ss_pred ------HHHHhh-heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCCHH
Confidence 112343 799999998888888999999653211100 0112235667888999986554 899999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||||+.+|++||||| +||+.++..+.++|.++. ++.|.|||++|||++. +.++||+++++++
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~--~~~~~tiii~sH~~~~--i~~~~d~i~~l~~ 223 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS--QERGLTVIAVLHDINM--AARYCDYLVALRG 223 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999999 999999999999999983 3348999999996555 8889999999876
No 139
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.3e-42 Score=315.40 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=160.8
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
++|+++.|++. + +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...... .
T Consensus 1 i~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-----~ 69 (206)
T TIGR03608 1 LKNISKKFGDK--I----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSK-----K 69 (206)
T ss_pred CcceEEEECCE--E----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchh-----h
Confidence 46899999642 2 5999999999999999999999999999999999998 899999999875322110 0
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecceee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAM 226 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAr 226 (382)
.....+ +.++|++|++.+|+..|+.+|+.+....... .....+++.++++.+++.+..+ +++.+||||||||++|||
T Consensus 70 ~~~~~~-~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 70 ASKFRR-EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-QKIYELSGGEQQRVALAR 147 (206)
T ss_pred HHHHHH-hCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-CChhhCCHHHHHHHHHHH
Confidence 111123 3899999999999889999999764321111 1112345677889999976654 899999999999999999
Q ss_pred eehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 227 VVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 227 aL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
||+.+|++||||| +||+.++..+.+.|+++ .+.|.|+|++|||++. + ..||++++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sh~~~~--~-~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLEL---NDEGKTIIIVTHDPEV--A-KQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--H-hhcCEEEeC
Confidence 9999999999999 99999999999999998 3358999999997654 5 467877654
No 140
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=329.96 Aligned_cols=204 Identities=16% Similarity=0.064 Sum_probs=166.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 2 ~l~~~~l~~~~~~~~------il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~---- 71 (258)
T PRK13548 2 MLEARNLSVRLGGRT------LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP---- 71 (258)
T ss_pred eEEEEeEEEEeCCee------eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH----
Confidence 578899999996432 5999999999999999999999999999999999998 89999999986542211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
..++ +.++|++|++.+++.+|+.+|+.+....... .....+.+.++++.+++.+... +++.+|||||||||+
T Consensus 72 -----~~~~-~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGe~qrv~ 144 (258)
T PRK13548 72 -----AELA-RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-RDYPQLSGGEQQRVQ 144 (258)
T ss_pred -----HHhh-hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHH
Confidence 1123 3799999998887778999999754211110 0111234667888999986554 999999999999999
Q ss_pred eeeeeh------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVS------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+ .+|++||||| +||+.++..+.+.|+++. +++|.|||++|||++. +..+||++++|++
T Consensus 145 la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 216 (258)
T PRK13548 145 LARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLA--HERGLAVIVVLHDLNL--AARYADRIVLLHQ 216 (258)
T ss_pred HHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEECCHHH--HHHhcCEEEEEEC
Confidence 999999 5999999999 999999999999999982 2468999999996665 8889999999976
No 141
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=324.78 Aligned_cols=209 Identities=18% Similarity=0.090 Sum_probs=167.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|+++.|+... +|+|+||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..... .
T Consensus 2 ~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~ 72 (242)
T PRK11124 2 SIQLNGINCFYGAHQ------ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT---P 72 (242)
T ss_pred EEEEEeeEEEECCee------eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccc---c
Confidence 467899999996432 5999999999999999999999999999999999999 89999999986521100 0
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-hcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-SEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.......+|+ .++|++|++.+|+.+|+.+|+....... ... ....+.+.++++.+|+.+.+. +.+.+|||||||||
T Consensus 73 ~~~~~~~~~~-~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv 150 (242)
T PRK11124 73 SDKAIRELRR-NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-RFPLHLSGGQQQRV 150 (242)
T ss_pred chhhHHHHHh-heEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHH
Confidence 0011122444 7999999999998899999996432111 111 111234667788899986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ +++|+|+|++|||++. +..++|+++++++
T Consensus 151 ~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sh~~~~--~~~~~d~i~~l~~ 216 (242)
T PRK11124 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL---AETGITQVIVTHEVEV--ARKTASRVVYMEN 216 (242)
T ss_pred HHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999 99999999999999998 3458999999996655 8888999998876
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=331.21 Aligned_cols=207 Identities=13% Similarity=0.032 Sum_probs=169.9
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
...+|+++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 4 ~~~~l~i~~l~~~~~~~--~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-- 75 (265)
T PRK10253 4 SVARLRGEQLTLGYGKY--T----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYA-- 75 (265)
T ss_pred cccEEEEEEEEEEECCE--E----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCC--
Confidence 45688999999999643 2 5999999999999999999999999999999999998 8999999998653211
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-----cCccccccccccCccccccccccccccCCCcc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-----EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
....++ .++|+||++.+|+..|+.+|+........ ......+.+.++++.+++.+... +++.+|||
T Consensus 76 -------~~~~~~-~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~ 146 (265)
T PRK10253 76 -------SKEVAR-RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-QSVDTLSG 146 (265)
T ss_pred -------HHHHhh-heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCCh
Confidence 111233 79999999988888999999965321110 00111235667888999986554 99999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||++|||||+.+|++||||| +||+.++..+.+.|.++. ++.|.|||++|||++. +.++||+++++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~--~~~~~tiii~tH~~~~--~~~~~d~i~~l~~ 219 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN--REKGYTLAAVLHDLNQ--ACRYASHLIALRE 219 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999 999999999999999983 3358999999996665 8899999999976
No 143
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.9e-42 Score=323.45 Aligned_cols=204 Identities=13% Similarity=0.011 Sum_probs=162.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
|+++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|++ + ++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~--- 71 (243)
T TIGR01978 1 LKIKDLHVSVEDK--E----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP--- 71 (243)
T ss_pred CeEeeEEEEECCE--E----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH---
Confidence 4678999999642 2 599999999999999999999999999999999995 5 79999999987643211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--C---cc---ccccccccCccccccccccccccC-CC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--G---VH---HNQRCLRSDDCALMKNDAEIDDLK-SS 214 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~---~~---~~~~~~~~l~~~~L~~~~~~~~~~-~L 214 (382)
.. .++..++|++|++.+|+.+|+.+|+......... . .. ..+++.++++.+++.+...++.+. +|
T Consensus 72 ---~~---~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 145 (243)
T TIGR01978 72 ---DE---RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGF 145 (243)
T ss_pred ---HH---hhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCc
Confidence 11 1112589999999999999999999764321110 0 01 123456778889997433347776 59
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh-hhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL-DARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~-~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||+||||++. +..+ ||++++|++
T Consensus 146 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tvi~vsH~~~~--~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL---REPDRSFLIITHYQRL--LNYIKPDYVHVLLD 220 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH---HHCCcEEEEEEecHHH--HHhhcCCeEEEEeC
Confidence 9999999999999999999999999 99999999999999998 3468999999996655 8887 799998876
No 144
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-41 Score=314.73 Aligned_cols=200 Identities=17% Similarity=0.127 Sum_probs=170.6
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 168 (382)
+++|+.+.-.++||.|+||||||||+|+|+|+.+ ++|.|.+||.-+.+.......+.. + ++|||||||..|||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~-----~-RriGYVFQDARLFp 89 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPE-----K-RRIGYVFQDARLFP 89 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChh-----h-heeeeEeecccccc
Confidence 6789998767999999999999999999999999 899999999977665443333322 2 48999999999999
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCc
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKP 245 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~ 245 (382)
++||+.|+.+... ........++.+.+|+.+.+. ++|.+|||||||||||+|||+..|++||||| +||..-
T Consensus 90 H~tVrgNL~YG~~-----~~~~~~fd~iv~lLGI~hLL~-R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 90 HYTVRGNLRYGMW-----KSMRAQFDQLVALLGIEHLLD-RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ceEEecchhhhhc-----ccchHhHHHHHHHhCcHHHHh-hCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 9999999976542 123445677888999997765 9999999999999999999999999999999 999999
Q ss_pred chhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceeeEEEe
Q 016817 246 LDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYDIVCL 305 (382)
Q Consensus 246 ~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~~~~l 305 (382)
+.+++-.|.++. .+.+..|++||| .++++.+.+|+|++|++ ...+..+++|..+.+
T Consensus 164 K~EilpylERL~--~e~~IPIlYVSH--S~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~ 222 (352)
T COG4148 164 KREILPYLERLR--DEINIPILYVSH--SLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDF 222 (352)
T ss_pred hhHHHHHHHHHH--HhcCCCEEEEec--CHHHHHhhhheEEEecCCeEEecCcHHHHhcCccc
Confidence 999999999994 667899999999 77779999999999998 556677777765543
No 145
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=325.37 Aligned_cols=203 Identities=17% Similarity=0.095 Sum_probs=165.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~ 139 (382)
+++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQV--E----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECCe--e----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 57899999999643 2 5999999999999999999999999999999999986 3999999998764221
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C--ccccccccccCcccccccc---ccccccCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G--VHHNQRCLRSDDCALMKND---AEIDDLKS 213 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~--~~~~~~~~~~l~~~~L~~~---~~~~~~~~ 213 (382)
...+++ .+||+||++.+++..|+.+|+.+....... . ....+.+.++++.+++.+. ..++++.+
T Consensus 77 ---------~~~~~~-~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 146 (250)
T PRK14247 77 ---------VIELRR-RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGK 146 (250)
T ss_pred ---------HHHHhc-cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCccc
Confidence 112343 899999999888889999999764321110 0 1112346677888888531 23488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . .|.|+|++|||++. +..+||++++|++
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~sH~~~~--~~~~~d~i~~l~~ 220 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL---K-KDMTIVLVTHFPQQ--AARISDYVAFLYK 220 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999999999999 99999999999999997 3 37999999996655 8889999999976
No 146
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.7e-42 Score=316.22 Aligned_cols=198 Identities=13% Similarity=0.046 Sum_probs=164.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~----- 69 (204)
T PRK13538 1 MLEARNLACERDER--I----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR----- 69 (204)
T ss_pred CeEEEEEEEEECCE--E----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-----
Confidence 46788999999642 2 5999999999999999999999999999999999999 8999999998654211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+++ .++|++|++.+++.+|+.+|+....... +....+++.++++.+|+.+.. ++++.+||||||||++|
T Consensus 70 -----~~~~~-~~~~~~~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl~l 140 (204)
T PRK13538 70 -----DEYHQ-DLLYLGHQPGIKTELTALENLRFYQRLH--GPGDDEALWEALAQVGLAGFE-DVPVRQLSAGQQRRVAL 140 (204)
T ss_pred -----HHhhh-heEEeCCccccCcCCcHHHHHHHHHHhc--CccHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHHHH
Confidence 11333 7999999998888899999997643211 112334667789999998655 48999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
||||+.+|++||||| +||+.++..+.+.|+++ +++|.|||++|||+.. +..+..|++++
T Consensus 141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~--i~~~~~~~~~~ 202 (204)
T PRK13538 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH---AEQGGMVILTTHQDLP--VASDKVRKLRL 202 (204)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HHCCCEEEEEecChhh--hccCCceEEec
Confidence 999999999999999 99999999999999997 3458899999997666 77677777665
No 147
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-42 Score=344.61 Aligned_cols=251 Identities=14% Similarity=0.122 Sum_probs=203.3
Q ss_pred eccccchhhhh-hhccCCCCccccchhHHHHHHhhhhhhc------CcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 23 WRSAAKFDECV-KLKLDLPNVSTLTPRLRVLREMERLALI------APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 23 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
+...++|.-++ ..+..+++...+..|+.++.+.++.... ..+..++++||||+|++...+ +|+|+||++
T Consensus 286 f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~----~L~~~~l~l 361 (573)
T COG4987 286 FAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTK----ALKNFNLTL 361 (573)
T ss_pred HHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccc----hhhccceee
Confidence 44456666666 6667888889999999999888765211 112278999999999876644 699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++||.+||+|+||||||||+++|+|.++ ++|+|.++|.++..++.. . +|. .++++.|.+.+|. .|+++
T Consensus 362 ~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~------~---~~e-~i~vl~Qr~hlF~-~Tlr~ 430 (573)
T COG4987 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQ------A---LRE-TISVLTQRVHLFS-GTLRD 430 (573)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChh------h---HHH-HHhhhccchHHHH-HHHHH
Confidence 9999999999999999999999999999 899999999987654431 1 444 8999999999998 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccccc----------ccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEID----------DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~----------~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|+.. .++...++.+.++++++||++.+.+. .-..||||||||++|||+|+++.+++|||| +|
T Consensus 431 NL~l-----A~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegL 505 (573)
T COG4987 431 NLRL-----ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505 (573)
T ss_pred HHhh-----cCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccC
Confidence 9953 34556778899999999998766532 123499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|+.+..+++++|.+-+ +|+|+|||||++.- +. .+|+|+++++ +..+...+.+
T Consensus 506 D~~TE~~vL~ll~~~~----~~kTll~vTHrL~~--le-~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 506 DPITERQVLALLFEHA----EGKTLLMVTHRLRG--LE-RMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred ChhhHHHHHHHHHHHh----cCCeEEEEeccccc--Hh-hcCEEEEEECCeeeecCCHHhhh
Confidence 9999999999998853 69999999994444 65 5677777776 5666655554
No 148
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=8.6e-42 Score=318.51 Aligned_cols=205 Identities=14% Similarity=0.114 Sum_probs=166.3
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.+++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 4 ~~~~i~~~~l~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~- 76 (225)
T PRK10247 4 NSPLLQLQNVGYLAGDAK------ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP- 76 (225)
T ss_pred CCceEEEeccEEeeCCce------eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH-
Confidence 345799999999996432 5999999999999999999999999999999999998 89999999986543211
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+++ .++|+||++.+|+ .|+.+|+.+..... ......+++.++++.+++.+...++++.+|||||+||
T Consensus 77 --------~~~~~-~i~~~~q~~~l~~-~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 145 (225)
T PRK10247 77 --------EIYRQ-QVSYCAQTPTLFG-DTVYDNLIFPWQIR-NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQR 145 (225)
T ss_pred --------HHHHh-ccEEEeccccccc-ccHHHHHHhHHhhc-CCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHH
Confidence 11333 8999999998887 59999997542111 1111223456788899996433348999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +. .||+++++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tvii~sh~~~~--~~-~~d~i~~l~~ 212 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV--REQNIAVLWVTHDKDE--IN-HADKVITLQP 212 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEECChHH--HH-hCCEEEEEec
Confidence 999999999999999999 999999999999999983 3458999999997665 75 5899998863
No 149
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=328.08 Aligned_cols=203 Identities=15% Similarity=0.093 Sum_probs=166.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++. . +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 2 ~l~~~~l~~~~~~~--~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----- 70 (255)
T PRK11231 2 TLRTENLTVGYGTK--R----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLS----- 70 (255)
T ss_pred EEEEEeEEEEECCE--E----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCC-----
Confidence 47789999999642 2 5999999999999999999999999999999999998 8999999998653211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh----hhc-CccccccccccCccccccccccccccCCCcccee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW----MSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~----~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
. ..+++ .++|+||++.+++..|+.+|+.+.... +.. .....+++.++++.+++.+... +++.+|||||+
T Consensus 71 -~---~~~~~-~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~ 144 (255)
T PRK11231 71 -S---RQLAR-RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-RRLTDLSGGQR 144 (255)
T ss_pred -H---HHHhh-heEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-CCcccCCHHHH
Confidence 1 11333 799999999888888999999753211 110 1112235667888899986554 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +.++||+++++++
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l---~~~~~tiii~tH~~~~--~~~~~d~i~~l~~ 213 (255)
T PRK11231 145 QRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL---NTQGKTVVTVLHDLNQ--ASRYCDHLVVLAN 213 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEECCHHH--HHHhcCEEEEEEC
Confidence 99999999999999999999 99999999999999997 3358999999996555 8899999999976
No 150
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-42 Score=331.08 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=171.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~~~-~----~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----- 72 (277)
T PRK13652 3 LIETRDLCYSYSGSK-E----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN----- 72 (277)
T ss_pred eEEEEEEEEEeCCCC-c----eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-----
Confidence 578899999996332 1 5999999999999999999999999999999999999 8999999998654211
Q ss_pred hhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...+++ .+||+||++. ++ ..|+.+|+.+....... .....+++.++++.+++.+... +.+.+||||||||
T Consensus 73 ----~~~~~~-~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qr 145 (277)
T PRK13652 73 ----IREVRK-FVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-RVPHHLSGGEKKR 145 (277)
T ss_pred ----HHHHHh-heEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHHHHHH
Confidence 112333 7999999973 44 47999999654321111 1111234677889999986655 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
++|||||+.+|++||||| +||+.++..+.++|+++. ++.|.|||++|||++. +.++||+++++++ +..++
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~--~~~g~tvli~tH~~~~--~~~~~drv~~l~~G~i~~~g~ 221 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLP--ETYGMTVIFSTHQLDL--VPEMADYIYVMDKGRIVAYGT 221 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEECCeEEEECC
Confidence 999999999999999999 999999999999999983 3348999999996655 8889999999976 44555
Q ss_pred ccceee
Q 016817 296 ISGVYD 301 (382)
Q Consensus 296 ~~~v~~ 301 (382)
+++++.
T Consensus 222 ~~~~~~ 227 (277)
T PRK13652 222 VEEIFL 227 (277)
T ss_pred HHHHhc
Confidence 555553
No 151
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-42 Score=339.72 Aligned_cols=246 Identities=17% Similarity=0.165 Sum_probs=199.3
Q ss_pred cchhhhhhhccCCCCccccchhHHHHHHhhhh--------hhcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCce
Q 016817 27 AKFDECVKLKLDLPNVSTLTPRLRVLREMERL--------ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G 98 (382)
.|+.-.|.+--.+++...-+++..++++.++. +...+.+.|+++||+|.|..++ ++|+||||++.+|
T Consensus 490 ~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k-----~vl~disF~v~pG 564 (790)
T KOG0056|consen 490 MPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGK-----PVLSDISFTVQPG 564 (790)
T ss_pred CchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCC-----ceeecceEEecCC
Confidence 45555555556667777788888888888875 2223457899999999998765 3699999999999
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
+++|||||||+||||++|++.++++ .+|.|.|||+|++... ...+|+ .||.||||..||+ .|+..||.
T Consensus 565 ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt---------~~SLRs-~IGVVPQDtvLFN-dTI~yNIr 633 (790)
T KOG0056|consen 565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT---------QSSLRS-SIGVVPQDTVLFN-DTILYNIR 633 (790)
T ss_pred cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH---------HHHHHH-hcCcccCcceeec-ceeeehee
Confidence 9999999999999999999999999 9999999999875322 234776 9999999999998 79999995
Q ss_pred HHHhhhhcCccccccccccCccccccccccccccCC-----------CccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-----------SPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----------LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
+. +..+.++++.++.+..++.+.+. ..|.. |||||||||||||+++++|.|++||| +||.
T Consensus 634 ya-----k~~AsneevyaAAkAA~IHdrIl-~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT 707 (790)
T KOG0056|consen 634 YA-----KPSASNEEVYAAAKAAQIHDRIL-QFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT 707 (790)
T ss_pred ec-----CCCCChHHHHHHHHHhhHHHHHh-cCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence 43 45556677888888777776554 44443 99999999999999999999999999 9999
Q ss_pred CcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--ccccccccee
Q 016817 244 KPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--LGVSEISGVY 300 (382)
Q Consensus 244 ~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--~~~~~~~~v~ 300 (382)
.+++.|+..|.+++ .++|.|+|.| +++++.++|.++++-++ ++.|..++.+
T Consensus 708 ~tER~IQaaL~rlc----a~RTtIVvAH--RLSTivnAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 708 NTERAIQAALARLC----ANRTTIVVAH--RLSTIVNADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred ccHHHHHHHHHHHh----cCCceEEEee--eehheecccEEEEEeCCeEeecCcHHHHH
Confidence 99999999999996 6889999999 89888875555554444 5556555544
No 152
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=332.86 Aligned_cols=218 Identities=14% Similarity=0.104 Sum_probs=172.9
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc---ceeeeEeecCCCcc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGNSS 139 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~---G~I~i~G~~i~~~~ 139 (382)
+.+++++|++++|++.... +|+++||+|++||+++|+||||||||||+++|+|+++ ++ |+|+++|.++....
T Consensus 3 ~~~l~i~~l~~~~~~~~~~----~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKP----ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred CceEEEEEEEEEcCCCCcc----ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCC
Confidence 4578999999999643222 5999999999999999999999999999999999998 65 99999998764211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
...+++ .+||+||++. +++..|+.+|+.+........ ....+++.++++.+||.+... ++|.+||||
T Consensus 79 ---------~~~~~~-~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~G 147 (282)
T PRK13640 79 ---------VWDIRE-KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-SEPANLSGG 147 (282)
T ss_pred ---------HHHHHh-heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHH
Confidence 111343 8999999974 566689999997532111111 111245677899999987655 999999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---c
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---L 291 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~ 291 (382)
|+|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||++|||++. +. .||++++|++ +
T Consensus 148 ~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~--~~~g~tvli~tH~~~~--~~-~~d~i~~l~~G~i~ 222 (282)
T PRK13640 148 QKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK--KKNNLTVISITHDIDE--AN-MADQVLVLDDGKLL 222 (282)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HH-hCCEEEEEECCEEE
Confidence 9999999999999999999999 999999999999999983 3358999999997665 74 6899998876 4
Q ss_pred ccccccceee
Q 016817 292 GVSEISGVYD 301 (382)
Q Consensus 292 ~~~~~~~v~~ 301 (382)
..+++++++.
T Consensus 223 ~~g~~~~~~~ 232 (282)
T PRK13640 223 AQGSPVEIFS 232 (282)
T ss_pred EeCCHHHHhc
Confidence 4555555654
No 153
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-42 Score=308.29 Aligned_cols=227 Identities=17% Similarity=0.103 Sum_probs=189.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+.+|+|++..++. +|+++||++.+||++||+||||||||||||.|+|... ++|++.++|.++..++
T Consensus 1 mi~a~nls~~~~Gr~------ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~----- 69 (259)
T COG4559 1 MIRAENLSYSLAGRR------LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP----- 69 (259)
T ss_pred CeeeeeeEEEeecce------eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCC-----
Confidence 578899998886554 6999999999999999999999999999999999998 8999999999765433
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-c--cccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-V--HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~--~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+.+ ++-+.++|+..+-..+||.|.+.+.......+ . .+.+.+.++|..+++..+.. +...+||||||||
T Consensus 70 -~~~lA----~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-R~y~~LSGGEqQR 143 (259)
T COG4559 70 -PEELA----RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-RDYRTLSGGEQQR 143 (259)
T ss_pred -HHHHH----HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-cchhhcCchHHHH
Confidence 23333 35678999987744489999998776444322 2 23344778899999987655 8899999999999
Q ss_pred cceeeeehh------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--
Q 016817 222 VDFAMVVSN------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY-- 290 (382)
Q Consensus 222 vaIAraL~~------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~-- 290 (382)
|.+||+|++ ++++|+||| +||+.++..++++.++++ ..|..|+.|-||+++ +..|||+|++|++
T Consensus 144 VqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la---~~g~~V~~VLHDLNL--AA~YaDrivll~~Gr 218 (259)
T COG4559 144 VQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA---REGGAVLAVLHDLNL--AAQYADRIVLLHQGR 218 (259)
T ss_pred HHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHH---hcCCcEEEEEccchH--HHHhhheeeeeeCCe
Confidence 999999987 345889999 999999999999999994 468999999999999 9999999999998
Q ss_pred -cccccccceeeEEEecc-ccCCCCc
Q 016817 291 -LGVSEISGVYDIVCLTE-YGFPAEE 314 (382)
Q Consensus 291 -~~~~~~~~v~~~~~l~~-~~~~~~~ 314 (382)
+..+.|.++++.|.++. ||.+..+
T Consensus 219 v~a~g~p~~vlt~Etl~~vyg~~~~V 244 (259)
T COG4559 219 VIASGSPQDVLTDETLERVYGADIRV 244 (259)
T ss_pred EeecCCHHHhcCHHHHHHHhCCceee
Confidence 78889999999988877 8876544
No 154
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-42 Score=330.01 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=171.5
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+..+++++|++++|+++..+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 4 ~~~~l~~~nl~~~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~-- 77 (271)
T PRK13632 4 KSVMIKVENVSFSYPNSENN----ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN-- 77 (271)
T ss_pred cceEEEEEeEEEEcCCCCcc----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC--
Confidence 34589999999999643222 6999999999999999999999999999999999999 8999999998764211
Q ss_pred eeehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCcccee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
...+|+ .+||++|++. .|+.+|+.+|+.+........ ....+.+.++++.+++.+... +++.+||||||
T Consensus 78 -------~~~~~~-~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~ 148 (271)
T PRK13632 78 -------LKEIRK-KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-KEPQNLSGGQK 148 (271)
T ss_pred -------HHHHhc-ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CCcccCCHHHH
Confidence 112444 7999999974 566689999997543211111 111234667888999986655 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccc
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGV 293 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~ 293 (382)
||++|||||+.+|++||||| +||+.++..++++|+++. ++.+.|||++|||++. +. .||++++|++ ...
T Consensus 149 qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~-~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 149 QRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLR--KTRKKTLISITHDMDE--AI-LADKVIVFSEGKLIAQ 223 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEEechhH--Hh-hCCEEEEEECCEEEEe
Confidence 99999999999999999999 999999999999999983 3335899999997665 65 6899988876 333
Q ss_pred cccccee
Q 016817 294 SEISGVY 300 (382)
Q Consensus 294 ~~~~~v~ 300 (382)
+++++++
T Consensus 224 g~~~~~~ 230 (271)
T PRK13632 224 GKPKEIL 230 (271)
T ss_pred cCHHHHh
Confidence 4444444
No 155
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5.6e-42 Score=327.86 Aligned_cols=209 Identities=13% Similarity=0.077 Sum_probs=166.6
Q ss_pred CchhHHHHHhhhcccC-------CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 64 DGLNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~-------~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+++|+++||+++|+.. ..+ +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 77 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVE----AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL 77 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccc----eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence 3578999999999631 112 6999999999999999999999999999999999999 899999999865
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhh--cCccccccccccCcccccccccccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
.... .. .+++.++|+||++. +++..|+.+++........ ......+.+.++++.+++.+...++++
T Consensus 78 ~~~~---------~~-~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 147 (267)
T PRK15112 78 HFGD---------YS-YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP 147 (267)
T ss_pred CCCc---------hh-hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc
Confidence 3211 01 12237999999974 5677889888865321110 011122456778999999533344889
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +..+||+++++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tviivsH~~~~--~~~~~d~i~~l 223 (267)
T PRK15112 148 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQ--EKQGISYIYVTQHLGM--MKHISDQVLVM 223 (267)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCcEEEEEeCCHHH--HHHhcCEEEEE
Confidence 9999999999999999999999999999 999999999999999983 3358999999996555 88899999999
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 224 ~~ 225 (267)
T PRK15112 224 HQ 225 (267)
T ss_pred EC
Confidence 76
No 156
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-41 Score=316.63 Aligned_cols=208 Identities=15% Similarity=0.040 Sum_probs=164.0
Q ss_pred hhHHHHHhhhcccC-----CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee----cC
Q 016817 66 LNELRHKFLSYRSG-----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT----SS 135 (382)
Q Consensus 66 ~i~i~nvs~~y~~~-----~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~----~i 135 (382)
|++++|++++|+.. ... +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|. ++
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~ 76 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLP----VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDL 76 (224)
T ss_pred CEEEEeeEEEeecccCCCcceE----EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccch
Confidence 46789999999631 122 5999999999999999999999999999999999998 8999999842 22
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCC
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
.. ........++++.+||++|++.+++.+|+.+|+.+.....+.. ....+++.++++.+++.+...++++.+|
T Consensus 77 ~~------~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 77 AQ------ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred hh------cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 11 1112222233347999999999999999999997532211111 1112456678888999764444889999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||||||++|||||+.+|++||||| +||+.++..+.+.|+++ +++|+|||+||||++. +..+||+++.+
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~g~tii~vsH~~~~--~~~~~d~i~~~ 222 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA---KARGAALIGIFHDEEV--RELVADRVMDV 222 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--HHHhcceeEec
Confidence 9999999999999999999999999 99999999999999998 3458999999996555 87888988765
No 157
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-42 Score=325.63 Aligned_cols=206 Identities=17% Similarity=0.094 Sum_probs=164.9
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~ 138 (382)
.+++++|++++|+... +|+|+||+|++||+++|+||||||||||+++|+|+++ + +|+|+++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~------~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGSNH------VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCCee------eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 3688999999996432 5999999999999999999999999999999999987 4 89999999876411
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc---CccccccccccCcccccccc---ccccccC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE---GVHHNQRCLRSDDCALMKND---AEIDDLK 212 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~---~~~~~~~~~~~l~~~~L~~~---~~~~~~~ 212 (382)
. . ....+|. .++|+||++.+|+..|+.+|+.+....... .....+.+.++++.+++.+. ..++++.
T Consensus 77 ~----~---~~~~~~~-~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 148 (253)
T PRK14267 77 D----V---DPIEVRR-EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148 (253)
T ss_pred c----c---ChHHHhh-ceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChh
Confidence 0 0 0112344 799999999999889999999754321110 01112345667788887421 2348899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. +++|||++|||++. +..+||++++++
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~--~~~~~d~i~~l~ 222 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK----KEYTIVLVTHSPAQ--AARVSDYVAFLY 222 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----hCCEEEEEECCHHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 36899999996655 888999999997
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 223 ~ 223 (253)
T PRK14267 223 L 223 (253)
T ss_pred C
Confidence 6
No 158
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.5e-41 Score=326.29 Aligned_cols=229 Identities=17% Similarity=0.120 Sum_probs=194.0
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~ 136 (382)
..+.++++|++..|...+..++ ++++|||+|.+||++||||.||||||-..+.|+||++ + +|+|.|+|.++-
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~--aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVE--AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CCcceeeeccEEEEecCCcceE--eeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 4568899999999975544442 7999999999999999999999999999999999997 3 799999999764
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccc--cccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKN--DAEIDD 210 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~ 210 (382)
..+.++++.+|..+|+|+||+| .|.|-.|+...+.+...+.. .....++++.++++.+|+.+ ...+.|
T Consensus 81 ------~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 81 ------AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred ------cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 3445677778888999999997 47888899888877654442 22334466778899999974 223489
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
|++|||||||||.||+||+++|++||.|| +||..-+.+|+++|+++ +++.|+++++||||+.+ +.+++|+|.+
T Consensus 155 PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L--q~~~gMa~lfITHDL~i--Vr~~ADrV~V 230 (534)
T COG4172 155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL--QAELGMAILFITHDLGI--VRKFADRVYV 230 (534)
T ss_pred CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH--HHHhCcEEEEEeccHHH--HHHhhhhEEE
Confidence 99999999999999999999999999999 99999999999999999 47789999999998888 9999999999
Q ss_pred hhh---cccccccceeeEE
Q 016817 288 CEY---LGVSEISGVYDIV 303 (382)
Q Consensus 288 l~~---~~~~~~~~v~~~~ 303 (382)
|.. +..+..+.+|..|
T Consensus 231 M~~G~ivE~~~t~~lF~~P 249 (534)
T COG4172 231 MQHGEIVETGTTETLFAAP 249 (534)
T ss_pred EeccEEeecCcHHHHhhCC
Confidence 987 6777778888654
No 159
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-41 Score=315.37 Aligned_cols=201 Identities=14% Similarity=0.079 Sum_probs=168.1
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccc
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~ 140 (382)
..+++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 7 ~~~~~l~~~~l~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~-- 78 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEP------VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG-- 78 (214)
T ss_pred CCcceEEEeeEEEecCCce------eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--
Confidence 3456899999999996432 5999999999999999999999999999999999999 899999999865321
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+ +.++|++|++.+++..|+.+|+...... .+....+.+.++++.+++.+..+ +++.+|||||||
T Consensus 79 ----------~~~-~~i~~~~q~~~~~~~~t~~e~l~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~q 144 (214)
T PRK13543 79 ----------DRS-RFMAYLGHLPGLKADLSTLENLHFLCGL--HGRRAKQMPGSALAIVGLAGYED-TLVRQLSAGQKK 144 (214)
T ss_pred ----------hhh-hceEEeecCcccccCCcHHHHHHHHHHh--cCCcHHHHHHHHHHHcCChhhcc-CChhhCCHHHHH
Confidence 022 3799999999888888999999754311 12222344567788899986654 899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||+||||++.+|++||||| +||+.++..+.+.|+++ .++|.|+|++|||++. +.++|+++++++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH---LRGGGAALVTTHGAYA--APPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEecChhh--hhhhcceEEEEe
Confidence 9999999999999999999 99999999999999987 3458999999996665 899999988764
No 160
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-42 Score=324.02 Aligned_cols=207 Identities=15% Similarity=0.098 Sum_probs=165.1
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
.+++|+++|++++|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 3 ~~~~l~~~~l~~~~~~~--~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 3 SPPKMEARGLSFFYGDF--Q----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred CCcEEEEeeeEEEECCe--e----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 35689999999999642 2 5999999999999999999999999999999999963 5899999998764
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---cccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDL 211 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~ 211 (382)
... .....+|+ .++|++|++.+|+ .|+.+|+.+......... ...+++.++++.+++.+. ..++++
T Consensus 77 ~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (253)
T PRK14242 77 DPH-------VDVVELRR-RVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESA 147 (253)
T ss_pred ccc-------cCHHHHhh-cEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc
Confidence 211 01112343 8999999998888 599999976432111101 112445667788887431 224789
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ + .+.|||++|||++. +.++||+++++
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~-~~~tvii~tH~~~~--~~~~~d~v~~l 221 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL---K-ARYTIIIVTHNMQQ--AARVSDVTAFF 221 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---h-cCCeEEEEEecHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3 36899999996655 88899999999
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 222 ~~ 223 (253)
T PRK14242 222 YM 223 (253)
T ss_pred EC
Confidence 76
No 161
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-42 Score=329.45 Aligned_cols=216 Identities=17% Similarity=0.112 Sum_probs=170.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~-~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~----- 70 (275)
T PRK13639 1 ILETRDLKYSYPDGT-E----ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDK----- 70 (275)
T ss_pred CEEEEEEEEEeCCCC-e----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECcccc-----
Confidence 467899999996322 2 5999999999999999999999999999999999999 8999999998763110
Q ss_pred hhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.....+++ .++|+||++. +++ .|+.+|+.+........ ....+++.++++.+++.+.. ++++.+|||||+||
T Consensus 71 --~~~~~~~~-~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~Gq~qr 145 (275)
T PRK13639 71 --KSLLEVRK-TVGIVFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-NKPPHHLSGGQKKR 145 (275)
T ss_pred --chHHHHHh-heEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-cCChhhCCHHHHHH
Confidence 11112343 8999999963 454 79999996543211111 11124566788999998665 49999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
++|||||+.+|++||||| +||+.++..+.+.|+++ .+.|.|||++|||++. +..+||++++|++ +..++
T Consensus 146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l---~~~~~til~vtH~~~~--~~~~~d~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL---NKEGITIIISTHDVDL--VPVYADKVYVMSDGKIIKEGT 220 (275)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999 99999999999999998 3358999999996555 8889999999976 44555
Q ss_pred ccceee
Q 016817 296 ISGVYD 301 (382)
Q Consensus 296 ~~~v~~ 301 (382)
+++++.
T Consensus 221 ~~~~~~ 226 (275)
T PRK13639 221 PKEVFS 226 (275)
T ss_pred HHHHhc
Confidence 655654
No 162
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-42 Score=326.29 Aligned_cols=217 Identities=15% Similarity=0.118 Sum_probs=169.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++++++|++++|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 9 ~~~~l~~~~l~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQ------ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred cceeEEEeeeEEEeCCee------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 356899999999996422 5999999999999999999999999999999999986 4999999998653
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccc---cccccccC
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKN---DAEIDDLK 212 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~---~~~~~~~~ 212 (382)
... .....+++ .++|+||++.+|+ .|+.+|+.+........ ....+.+.++++.+++.+ ...++++.
T Consensus 83 ~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 153 (258)
T PRK14268 83 EPD-------VDVVELRK-NVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPAL 153 (258)
T ss_pred ccc-------chHHHHhh-hEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChh
Confidence 211 01112343 7999999998888 89999997543211111 011234566788887732 22348899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||+|||+|||||+.+|++||||| +||+.++..+.+.|+++ . ++.|||+||||++. +.++||++++|+
T Consensus 154 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l---~-~~~tiiivsH~~~~--~~~~~d~i~~l~ 227 (258)
T PRK14268 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL---K-KDYTIVIVTHNMQQ--AARISDYTGFFL 227 (258)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH---h-hCCEEEEEECCHHH--HHHhCCEEEEEE
Confidence 999999999999999999999999999 99999999999999998 3 37999999996555 888999999997
Q ss_pred h---ccccccccee
Q 016817 290 Y---LGVSEISGVY 300 (382)
Q Consensus 290 ~---~~~~~~~~v~ 300 (382)
+ +..+++++++
T Consensus 228 ~G~i~~~~~~~~~~ 241 (258)
T PRK14268 228 MGELIEFGQTRQIF 241 (258)
T ss_pred CCEEEEeCCHHHHh
Confidence 6 3344444444
No 163
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.8e-42 Score=356.78 Aligned_cols=238 Identities=15% Similarity=0.114 Sum_probs=192.1
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-----c-CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCc
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----I-APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPP 97 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~ 97 (382)
++..|+.+++.....++.+..+.+|+.++++.++... . ...+.|+++||+|+|+++.++ +|+|+||+|++
T Consensus 272 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~----il~~i~l~i~~ 347 (529)
T TIGR02857 272 EFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRRAP----ALRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCCcc----cccceeEEECC
Confidence 4678999999999999999999999999987543211 1 112469999999999764333 59999999999
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
|+.++|+||||||||||+|+|+|+++ ++|+|.+||.++.+.+. ..+|+ +++||+|++.+|+ .|++||+
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~---------~~lr~-~i~~v~Q~~~lf~-~ti~~Ni 416 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA---------DSWRD-QIAWVPQHPFLFA-GTIAENI 416 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH---------HHHHh-heEEEcCCCcccC-cCHHHHH
Confidence 99999999999999999999999999 89999999998764432 23555 8999999999998 7999999
Q ss_pred HHHHhhhhcCccccccccccCccccccccccc----------cccCCCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 177 EELSSWMSEGVHHNQRCLRSDDCALMKNDAEI----------DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~----------~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
... .+...++++.++++.+++.+++.+ .....||||||||++|||||+++|++||||| +||+
T Consensus 417 ~~~-----~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~ 491 (529)
T TIGR02857 417 RLA-----RPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491 (529)
T ss_pred hcc-----CCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 542 122344567777887777654431 2335699999999999999999999999999 9999
Q ss_pred CcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 244 KPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 244 ~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+++.+.+.+.++. +++|+|+|||++ +.+. .||+|++|
T Consensus 492 ~~~~~i~~~l~~~~----~~~t~i~itH~~--~~~~-~~d~i~~l 529 (529)
T TIGR02857 492 ETEALVTEALRALA----QGRTVLLVTHRL--ALAE-RADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhc----CCCEEEEEecCH--HHHH-hCCEEEeC
Confidence 99999999999872 589999999954 4465 57777653
No 164
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=8.9e-42 Score=315.60 Aligned_cols=198 Identities=14% Similarity=0.091 Sum_probs=164.1
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
+++|++++|+ . .++++||++++|++++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 2 ~~~~l~~~~~--~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------- 66 (213)
T TIGR01277 2 ALDKVRYEYE--H------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA------- 66 (213)
T ss_pred eEEeeeEEeC--C------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC-------
Confidence 5789999995 2 3789999999999999999999999999999999999 8999999998764211
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-hcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-SEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..+ +.++|++|++.+|+.+|+.+|+.+..... ......++++.++++.+++.+... +.|.+||||||||++||
T Consensus 67 ----~~~-~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 67 ----PYQ-RPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-RLPEQLSGGQRQRVALA 140 (213)
T ss_pred ----hhc-cceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-CCcccCCHHHHHHHHHH
Confidence 123 37999999999998899999996532111 001112345667889999986654 99999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.++|+++. ++.|.|||+||||++. +..+||++++|++
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~--~~~~~tii~vsh~~~~--~~~~~d~v~~l~~ 204 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC--SERQRTLLMVTHHLSD--ARAIASQIAVVSQ 204 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHhhcCeEEEEEC
Confidence 99999999999999 999999999999999983 3348999999996655 8888999998875
No 165
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.3e-42 Score=361.33 Aligned_cols=241 Identities=17% Similarity=0.120 Sum_probs=197.0
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhh------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++.+|+..++.....+..+..+.+|+.++++.++.. .....+.|+++||+|+|++...+ +|+|+||+++
T Consensus 281 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~----il~~inl~i~ 356 (571)
T TIGR02203 281 IALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRP----ALDSISLVIE 356 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCCc----cccCeeEEec
Confidence 4788999999999999999999999999998765431 11123469999999999754333 5999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||+++|+|+||||||||+++|+|+++ ++|+|.++|.++.+... ..+|+ +++|++|++.+|+ .|+++|
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~---------~~~~~-~i~~v~Q~~~lf~-~Ti~~N 425 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL---------ASLRR-QVALVSQDVVLFN-DTIANN 425 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCH---------HHHHh-hceEEccCccccc-ccHHHH
Confidence 999999999999999999999999999 89999999997654321 22554 8999999999997 799999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+.... .+...++++.++++.+|+.+.+. +.| ..||||||||++||||++.+|++||||| +|
T Consensus 426 i~~~~----~~~~~~~~i~~~l~~~~l~~~i~-~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~L 500 (571)
T TIGR02203 426 IAYGR----TEQADRAEIERALAAAYAQDFVD-KLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSAL 500 (571)
T ss_pred HhcCC----CCCCCHHHHHHHHHHcChHHHHH-hCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 95321 11344567778888888875543 333 3499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.+++.+++.|.++. .++|+|+|||++.. . ..||+|+.+++
T Consensus 501 D~~~~~~i~~~L~~~~----~~~tiIiitH~~~~--~-~~~D~ii~l~~ 542 (571)
T TIGR02203 501 DNESERLVQAALERLM----QGRTTLVIAHRLST--I-EKADRIVVMDD 542 (571)
T ss_pred CHHHHHHHHHHHHHHh----CCCEEEEEehhhHH--H-HhCCEEEEEeC
Confidence 9999999999999872 57999999996644 4 56888888875
No 166
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.6e-42 Score=338.79 Aligned_cols=211 Identities=15% Similarity=0.069 Sum_probs=167.9
Q ss_pred HHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhh
Q 016817 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEH 149 (382)
Q Consensus 71 nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~ 149 (382)
|++++|++. .+ ++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....... ..
T Consensus 4 ~l~~~~~~~-------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~-----~~ 70 (354)
T TIGR02142 4 RFSKRLGDF-------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI-----FL 70 (354)
T ss_pred EEEEEECCE-------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcccc-----cc
Confidence 678888532 26 8999999999999999999999999999999998 8999999998764321100 01
Q ss_pred hhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh
Q 016817 150 NVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229 (382)
Q Consensus 150 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~ 229 (382)
...+ +.++|+||++.+|+++|+.+|+.+..... ......+++.++++.++|.+..+ +++.+|||||||||+|||||+
T Consensus 71 ~~~~-~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 71 PPEK-RRIGYVFQEARLFPHLSVRGNLRYGMKRA-RPSERRISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred chhh-CCeEEEecCCccCCCCcHHHHHHHHhhcc-ChhHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHH
Confidence 1123 37999999999999999999997643211 11112235677899999986654 999999999999999999999
Q ss_pred hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 230 NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 230 ~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
.+|++||||| +||+.++..+.+.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++++++.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~--~~~g~tiiivtH~~~~--~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLH--AEFGIPILYVSHSLQE--VLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9999999999 999999999999999983 3458999999996555 8889999999987 33444444543
No 167
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=8.7e-42 Score=325.36 Aligned_cols=210 Identities=14% Similarity=0.098 Sum_probs=169.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCccc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSH 140 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~ 140 (382)
++++++||+++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ + +|+|+++|.++.....
T Consensus 3 ~~l~~~nl~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ------ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCCeE------EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 4789999999996432 5999999999999999999999999999999999997 4 4999999986532110
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh--------h-cCccccccccccCcccccccccccccc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM--------S-EGVHHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~--------~-~~~~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
. ......+++ .++|+||++.+|+.+|+.+|+....... . ......+++.++++.+++.+..+ +.+
T Consensus 77 ~----~~~~~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~ 150 (262)
T PRK09984 77 L----ARDIRKSRA-NTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-QRV 150 (262)
T ss_pred c----chhHHHHHh-heEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-CCc
Confidence 0 011122343 7999999999999899999996532100 0 01112245677888999986554 899
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~g~tvii~tH~~~~--~~~~~d~i~~l 226 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN--QNDGITVVVTLHQVDY--ALRYCERIVAL 226 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 999999999999999983 3358999999996665 88899999999
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 227 ~~ 228 (262)
T PRK09984 227 RQ 228 (262)
T ss_pred EC
Confidence 76
No 168
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-42 Score=327.09 Aligned_cols=218 Identities=14% Similarity=0.142 Sum_probs=172.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++.... +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 5 ~~~l~i~~l~~~~~~~~~~----~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~--- 77 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASF----TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN--- 77 (269)
T ss_pred CceEEEEEEEEEcCCCCCc----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC---
Confidence 5589999999999653222 5999999999999999999999999999999999999 8999999998764211
Q ss_pred eehhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
...+++ .++|++|++. +|+..++.+|+.+........ ....+++.++++.+++.+... +++.+|||||||
T Consensus 78 ------~~~~~~-~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~q 149 (269)
T PRK13648 78 ------FEKLRK-HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-YEPNALSGGQKQ 149 (269)
T ss_pred ------HHHHHh-heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-CCcccCCHHHHH
Confidence 112444 7999999974 666688889886543211111 111235667888999986554 899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
|++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +.. ||+++++++ +..+
T Consensus 150 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~~~tiiivtH~~~~--~~~-~d~i~~l~~G~i~~~g 224 (269)
T PRK13648 150 RVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVK--SEHNITIISITHDLSE--AME-ADHVIVMNKGTVYKEG 224 (269)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCchH--Hhc-CCEEEEEECCEEEEec
Confidence 9999999999999999999 999999999999999973 3358999999997655 765 899988876 3444
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
++++++.
T Consensus 225 ~~~~~~~ 231 (269)
T PRK13648 225 TPTEIFD 231 (269)
T ss_pred CHHHHhc
Confidence 5444443
No 169
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-42 Score=325.41 Aligned_cols=208 Identities=15% Similarity=0.140 Sum_probs=166.5
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
.+.++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++
T Consensus 9 ~~~~~l~~~~l~~~~~~~--~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 9 TAPSKIQVRNLNFYYGKF--H----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CCCceEEEEEEEEEeCCe--E----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 456789999999999643 2 5999999999999999999999999999999999984 589999999876
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccc---cccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKN---DAEIDD 210 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~---~~~~~~ 210 (382)
.... .....+|+ .++|+||++.+|+ .|+.+|+.+....... . ....+++.++++.+++.+ ...+++
T Consensus 83 ~~~~-------~~~~~~~~-~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 83 LTPK-------QDIALLRA-KVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred cccc-------cchHHHhc-ceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 3210 01122444 8999999998888 8999999754321110 0 111245667788888742 123488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . .+.|||++|||++. +..++|++++
T Consensus 154 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~---~-~~~tiii~sH~~~~--~~~~~d~i~~ 227 (260)
T PRK10744 154 GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL---K-QDYTVVIVTHNMQQ--AARCSDYTAF 227 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEeCCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 99999999999999998 2 36899999996655 8889999999
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
+++
T Consensus 228 l~~ 230 (260)
T PRK10744 228 MYL 230 (260)
T ss_pred EEC
Confidence 986
No 170
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-41 Score=328.79 Aligned_cols=228 Identities=14% Similarity=0.074 Sum_probs=194.3
Q ss_pred CchhHHHHHhhhcccCCeee-----ecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCc
Q 016817 64 DGLNELRHKFLSYRSGDFWI-----PIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNS 138 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v-----~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~ 138 (382)
...++.+++...|+-++..+ +..+++++||++++|+.+||||.||||||||-.+|.+|++++|+|.|+|+++...
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~ 353 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGL 353 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccccc
Confidence 45789999999997532111 2348999999999999999999999999999999999999779999999987533
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcCc---cccccccccCccccccccccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEGV---HHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~---~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
..++...+|+ ++-.|||||+ |.|.+||.+.|.+......... ..++++.++|+.+||+....++||++
T Consensus 354 ------~~~~mrplR~-~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhE 426 (534)
T COG4172 354 ------SRKEMRPLRR-RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE 426 (534)
T ss_pred ------Chhhhhhhhh-hceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcc
Confidence 3344555776 8999999985 7899999999988764443222 23466788999999998777799999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||||+|||||++.+|++++||| +||..-+.++.++|+++ +++.|.+-++||||+.. +..+|++|++|++
T Consensus 427 FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L--Q~k~~LsYLFISHDL~V--vrAl~~~viVm~~ 502 (534)
T COG4172 427 FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL--QQKHGLSYLFISHDLAV--VRALCHRVIVMRD 502 (534)
T ss_pred cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH--HHHhCCeEEEEeccHHH--HHHhhceEEEEeC
Confidence 99999999999999999999999999 99999999999999999 47789999999997777 9999999999998
Q ss_pred ---cccccccceeeE
Q 016817 291 ---LGVSEISGVYDI 302 (382)
Q Consensus 291 ---~~~~~~~~v~~~ 302 (382)
+..|+.+++|+.
T Consensus 503 GkiVE~G~~~~if~~ 517 (534)
T COG4172 503 GKIVEQGPTEAVFAN 517 (534)
T ss_pred CEEeeeCCHHHHhcC
Confidence 778888889954
No 171
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.1e-41 Score=324.03 Aligned_cols=220 Identities=16% Similarity=0.062 Sum_probs=170.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec-----CCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS-----SGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~-----i~~~ 138 (382)
++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|++ +...
T Consensus 5 ~~l~~~~l~~~~~~~~------il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYGPRK------GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcCCce------eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 4789999999996432 5999999999999999999999999999999999998 89999999986 4321
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccccccccccCCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
. .......+++.++|++|++. +++..|+.+|+.+....+.. . ....+.+.++++.+++.+...++.+.+|
T Consensus 79 ~------~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 152 (258)
T PRK11701 79 S------EAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF 152 (258)
T ss_pred C------HHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccC
Confidence 1 11111122237999999973 56667888888643211110 0 0112345677888898642234899999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +..+||+++++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tii~isH~~~~--~~~~~d~i~~l~~g 228 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLV--RELGLAVVIVTHDLAV--ARLLAHRLLVMKQG 228 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEeCCHHH--HHHhcCEEEEEECC
Confidence 9999999999999999999999999 999999999999999873 3358999999996655 8888999999987
Q ss_pred --ccccccccee
Q 016817 291 --LGVSEISGVY 300 (382)
Q Consensus 291 --~~~~~~~~v~ 300 (382)
+..+++++++
T Consensus 229 ~i~~~~~~~~~~ 240 (258)
T PRK11701 229 RVVESGLTDQVL 240 (258)
T ss_pred EEEEeCCHHHHh
Confidence 3344444444
No 172
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=359.83 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=178.2
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcc--
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSS-- 139 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~-- 139 (382)
.+++|+++|++++|+...... ++|+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|.++....
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~--~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKI--AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CCceEEEeceEEEecCCCCce--eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccc
Confidence 356899999999996422111 16999999999999999999999999999999999998 8999999987542100
Q ss_pred --cceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhh-h-cCccccccccccCccccccc--ccccccc
Q 016817 140 --HTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWM-S-EGVHHNQRCLRSDDCALMKN--DAEIDDL 211 (382)
Q Consensus 140 --~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~-~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~ 211 (382)
............+|++.||||||++ .+++.+||.+|+.+..... + ......+++.++++.+||.+ ...++++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 0001111222234434799999997 6788899999997653221 1 11112345677899999963 2234899
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
++|||||||||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +.++||+|++|
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~--~~~g~tvi~itHdl~~--~~~~adri~vl 242 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQ--KEMSMGVIFITHDMGV--VAEIADRVLVM 242 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHH--HhcCCEEEEEcCCHHH--HHHhCCEEEEe
Confidence 9999999999999999999999999999 999999999999999983 4458999999996666 88999999999
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..+++++++
T Consensus 243 ~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 243 YQGEAVETGSVEQIF 257 (623)
T ss_pred eCCeecccCCHHHhh
Confidence 86 4445555554
No 173
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-42 Score=328.48 Aligned_cols=222 Identities=14% Similarity=0.105 Sum_probs=169.6
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++... ..++|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++......
T Consensus 3 l~~~~l~~~~~~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~---- 77 (280)
T PRK13649 3 INLQNVSYTYQAGTPF-EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKN---- 77 (280)
T ss_pred EEEEEEEEEcCCCCcc-ccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccc----
Confidence 6789999999642100 0016999999999999999999999999999999999998 899999999876432100
Q ss_pred hhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 146 MEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.....+|+ .++|++|++ .+|+ .|+.+|+.+........ ....+.+.++++.+++.+...++++.+|||||||||
T Consensus 78 -~~~~~~~~-~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 154 (280)
T PRK13649 78 -KDIKQIRK-KVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV 154 (280)
T ss_pred -cCHHHHHh-heEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 01112343 799999996 4565 69999997543211111 111234567788889974333489999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|+|||+||||++. +..+||+++++++ +..+++
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiiivsH~~~~--~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL---HQSGMTIVLVTHLMDD--VANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeccHHH--HHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999 99999999999999998 3358999999996655 8889999999976 334444
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
++++.
T Consensus 230 ~~~~~ 234 (280)
T PRK13649 230 KDIFQ 234 (280)
T ss_pred HHHhc
Confidence 44543
No 174
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-42 Score=361.40 Aligned_cols=223 Identities=16% Similarity=0.132 Sum_probs=178.4
Q ss_pred CchhHHHHHhhhcccC---------CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 64 DGLNELRHKFLSYRSG---------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~---------~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
.++++++||++.|+.. ... +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~ 386 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVH----AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQ 386 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceE----EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCE
Confidence 4589999999999621 112 6999999999999999999999999999999999999 8999999998
Q ss_pred cCCCcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc--CccccccccccCcccccccccccc
Q 016817 134 SSGNSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEID 209 (382)
Q Consensus 134 ~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~ 209 (382)
++...+ ......+|+ .|+|+||++ .+++.+|+.+|+.+....... .....+++.++++.+||.....++
T Consensus 387 ~i~~~~------~~~~~~~~~-~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 459 (623)
T PRK10261 387 RIDTLS------PGKLQALRR-DIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459 (623)
T ss_pred ECCcCC------HHHHHHhcC-CeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC
Confidence 764321 111222343 899999997 588889999999764321111 111224567889999996322349
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
+|++|||||||||+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||++. +.++||+|+
T Consensus 460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~--~~~g~tvi~isHdl~~--v~~~~dri~ 535 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQ--RDFGIAYLFISHDMAV--VERISHRVA 535 (623)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEE
Confidence 999999999999999999999999999999 999999999999999983 4458999999997666 999999999
Q ss_pred hhhh---cccccccceee
Q 016817 287 ICEY---LGVSEISGVYD 301 (382)
Q Consensus 287 ll~~---~~~~~~~~v~~ 301 (382)
+|++ +..+++.+++.
T Consensus 536 vl~~G~iv~~g~~~~i~~ 553 (623)
T PRK10261 536 VMYLGQIVEIGPRRAVFE 553 (623)
T ss_pred EEECCEEEEecCHHHHhc
Confidence 9976 45566666664
No 175
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-42 Score=321.38 Aligned_cols=200 Identities=15% Similarity=0.078 Sum_probs=164.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++||+++|+. . ..++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.....
T Consensus 1 ~l~~~~l~~~~~~-~-------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---- 68 (232)
T PRK10771 1 MLKLTDITWLYHH-L-------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---- 68 (232)
T ss_pred CeEEEEEEEEECC-c-------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh----
Confidence 4678999999963 2 348999999999999999999999999999999999 89999999986542211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh-hhcCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW-MSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.++|+||++.+|+.+|+.+|+.+.... ........+++.++++.+|+.+..+ +++.+|||||||||+
T Consensus 69 -------~~-~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ 139 (232)
T PRK10771 69 -------SR-RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-RLPGQLSGGQRQRVA 139 (232)
T ss_pred -------hh-ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-CCcccCCHHHHHHHH
Confidence 12 3799999999999888999999643211 0001112345677899999986654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||++.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++
T Consensus 140 laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 205 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC--QERQLTLLMVSHSLED--AARIAPRSLVVAD 205 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEECCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999 999999999999999973 3358999999996665 8889999999876
No 176
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.2e-42 Score=367.33 Aligned_cols=241 Identities=17% Similarity=0.109 Sum_probs=196.2
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
+++..|+.+++.+...++.+..+.+|+.++++.++... +...+.|+++||+|+|+.+..+ +|+|+||+|
T Consensus 405 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~----il~~i~l~i 480 (694)
T TIGR01846 405 GRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPE----VLSNLNLDI 480 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCcc----ccccceEEE
Confidence 46788999999999999999999999999998765311 1113468999999999754333 599999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++|+.++|+||||||||||+|+|+|+++ ++|+|.+||.++.+.+. ..+|+ .++||+|++.+|+ .|++|
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~---------~~~r~-~i~~v~q~~~lf~-~ti~e 549 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP---------AWLRR-QMGVVLQENVLFS-RSIRD 549 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCH---------HHHHH-hCeEEccCCeehh-hhHHH
Confidence 9999999999999999999999999999 89999999998764432 23565 8999999999998 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|+... .+...++.+.++++.+++.+.+. ......||||||||++|||||+++|++||||| +|
T Consensus 550 Ni~~~-----~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~L 624 (694)
T TIGR01846 550 NIALC-----NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSAL 624 (694)
T ss_pred HHhcC-----CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 99532 22234456666777776654432 12345699999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+.+.|+++. .++|+|+|||++ +.+. .+|+++++++
T Consensus 625 D~~~~~~i~~~l~~~~----~~~t~i~itH~~--~~~~-~~d~ii~l~~ 666 (694)
T TIGR01846 625 DYESEALIMRNMREIC----RGRTVIIIAHRL--STVR-ACDRIIVLEK 666 (694)
T ss_pred CHHHHHHHHHHHHHHh----CCCEEEEEeCCh--HHHH-hCCEEEEEeC
Confidence 9999999999999872 579999999955 4465 4888888876
No 177
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-42 Score=328.40 Aligned_cols=217 Identities=14% Similarity=0.062 Sum_probs=172.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+..... .+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...+
T Consensus 4 ~l~~~~l~~~~~~~~~~---~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~----- 75 (277)
T PRK13642 4 ILEVENLVFKYEKESDV---NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN----- 75 (277)
T ss_pred eEEEEEEEEEcCCCCcC---eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCC-----
Confidence 68899999999743211 15999999999999999999999999999999999999 8999999998764211
Q ss_pred hhhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeec
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
...+++ .+||+||++. .++..|+.+|+.+......... ...+++.++++.+++.+... +++.+|||||||||
T Consensus 76 ----~~~~~~-~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv 149 (277)
T PRK13642 76 ----VWNLRR-KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-REPARLSGGQKQRV 149 (277)
T ss_pred ----HHHHhc-ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHH
Confidence 112443 8999999974 5666899999975432111111 11234567888999986654 89999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +. .||+++++++ +..+++
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tiil~sH~~~~--~~-~~d~i~~l~~G~i~~~g~~ 224 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIK--EKYQLTVLSITHDLDE--AA-SSDRILVMKAGEIIKEAAP 224 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HH-hCCEEEEEECCEEEEeCCH
Confidence 99999999999999999 999999999999999983 3358999999996665 76 5899998876 445555
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
++++.
T Consensus 225 ~~~~~ 229 (277)
T PRK13642 225 SELFA 229 (277)
T ss_pred HHHhc
Confidence 55553
No 178
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=321.87 Aligned_cols=202 Identities=13% Similarity=0.105 Sum_probs=163.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh---c-ccceeeeEeecCCCcccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL---S-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~---~-~~G~I~i~G~~i~~~~~~ 141 (382)
+++++|+++.|++. . +|+|+||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++....
T Consensus 2 ~~~~~~l~~~~~~~--~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~-- 73 (246)
T PRK14269 2 IAKTTNLNLFYGKK--Q----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD-- 73 (246)
T ss_pred ceeeeeeEEEECCE--e----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC--
Confidence 57889999999642 2 599999999999999999999999999999999997 3 6999999999764321
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc---CccccccccccCcccccccc---ccccccCCCc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE---GVHHNQRCLRSDDCALMKND---AEIDDLKSSP 215 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~---~~~~~~~~~~~l~~~~L~~~---~~~~~~~~LS 215 (382)
...+|+ .++|+||++.+|+ .|+.+|+.+....... .....+++.++++.+++.+. ..++++.+||
T Consensus 74 -------~~~~~~-~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 144 (246)
T PRK14269 74 -------VVALRK-NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALS 144 (246)
T ss_pred -------HHHHhh-hEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCC
Confidence 112344 8999999999998 7999999754311110 01122345677888888532 2347889999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . .|+|+|+||||++. +..+||+++++++
T Consensus 145 ~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~tH~~~~--~~~~~d~i~~l~~ 216 (246)
T PRK14269 145 GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL---S-HNLSMIMVTHNMQQ--GKRVADYTAFFHL 216 (246)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---h-CCCEEEEEecCHHH--HHhhCcEEEEEEC
Confidence 999999999999999999999999 99999999999999997 3 37999999996555 8889999999986
No 179
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.3e-41 Score=323.18 Aligned_cols=202 Identities=17% Similarity=0.060 Sum_probs=165.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|+++.|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 2 l~~~~l~~~~~~~--~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----- 70 (256)
T TIGR03873 2 LRLSRVSWSAGGR--L----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR----- 70 (256)
T ss_pred ceEEeEEEEECCE--E----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH-----
Confidence 5678999999643 2 5999999999999999999999999999999999999 89999999986543211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-h-cC---ccccccccccCccccccccccccccCCCccceee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-S-EG---VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~-~~---~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
...++ .++|++|++.+++..|+.+|+.+..... . .. ....+++.++++.+++.+... +++.+|||||||
T Consensus 71 ----~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~q 144 (256)
T TIGR03873 71 ----RARAR-RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-RDMSTLSGGERQ 144 (256)
T ss_pred ----HHHhh-heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHH
Confidence 11333 7999999987777789999997542111 0 01 112235677888999986554 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+.+|++||||| +||+.++..+.+.|+++ +++|.|||++|||++. +..+||++++|++
T Consensus 145 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 212 (256)
T TIGR03873 145 RVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL---AATGVTVVAALHDLNL--AASYCDHVVVLDG 212 (256)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 9999999999999999999 99999999999999998 3458999999996665 8889999999976
No 180
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=327.59 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=172.4
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++++|++++|+++......++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++....
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~--- 78 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE--- 78 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc---
Confidence 357899999999974311000016999999999999999999999999999999999999 8999999998664211
Q ss_pred eehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCcccee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
....++ +.+||+||++. +++ .++.+|+.+.....+ ......+++.++++.+||.+... +++.+||||||
T Consensus 79 -----~~~~~~-~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~ 150 (280)
T PRK13633 79 -----NLWDIR-NKAGMVFQNPDNQIVA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-HAPHLLSGGQK 150 (280)
T ss_pred -----cHHHHh-hheEEEecChhhhhcc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHH
Confidence 111134 38999999974 444 688999865432211 11112345677899999987655 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccc
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGV 293 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~ 293 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +.. ||+++++++ +..
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~~~g~tillvtH~~~~--~~~-~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELN--KKYGITIILITHYMEE--AVE-ADRIIVMDSGKVVME 225 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecChHH--Hhc-CCEEEEEECCEEEEe
Confidence 99999999999999999999 999999999999999983 3358999999996665 765 888888876 345
Q ss_pred ccccceee
Q 016817 294 SEISGVYD 301 (382)
Q Consensus 294 ~~~~~v~~ 301 (382)
+++++++.
T Consensus 226 g~~~~~~~ 233 (280)
T PRK13633 226 GTPKEIFK 233 (280)
T ss_pred cCHHHHhc
Confidence 55555553
No 181
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=351.50 Aligned_cols=205 Identities=11% Similarity=0.085 Sum_probs=169.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++|+++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.++.....
T Consensus 3 ~~i~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--- 73 (501)
T PRK10762 3 ALLQLKGIDKAFPGV--K----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP--- 73 (501)
T ss_pred ceEEEeeeEEEeCCe--E----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---
Confidence 478999999999642 2 5999999999999999999999999999999999998 89999999987632111
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cC----ccccccccccCccccccccccccccCCCccce
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EG----VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~----~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
.. .+++.+||+||++.+++.+|+.+|+.+...... .. ...++++.++++.+|+.+..+ +++.+|||||
T Consensus 74 ---~~---~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~ 146 (501)
T PRK10762 74 ---KS---SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD-KLVGELSIGE 146 (501)
T ss_pred ---HH---HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHH
Confidence 11 122379999999999999999999976421110 01 011235677899999986654 8999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+|||||+.+|++||||| +||+.++..+.++|+++ ++.|.|||+||||++. +..+||+++++++
T Consensus 147 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~~~tvii~sHd~~~--~~~~~d~i~~l~~ 216 (501)
T PRK10762 147 QQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL---KSQGRGIVYISHRLKE--IFEICDDVTVFRD 216 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 999999999999999999999 99999999999999998 3458999999996665 8899999999976
No 182
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.1e-41 Score=309.55 Aligned_cols=194 Identities=13% Similarity=0.026 Sum_probs=162.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|+++.|++.. +|+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 l~i~~l~~~~~~~~------~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 68 (201)
T cd03231 1 LEADELTCERDGRA------LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR------ 68 (201)
T ss_pred CEEEEEEEEeCCce------eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc------
Confidence 35789999996432 5999999999999999999999999999999999999 8999999998653210
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..+++ .++|++|++.+++..|+.+|+.... .....+++.++++.+++.+.. ++++.+||||||||++||
T Consensus 69 ----~~~~~-~i~~~~q~~~~~~~~tv~e~l~~~~-----~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la 137 (201)
T cd03231 69 ----DSIAR-GLLYLGHAPGIKTTLSVLENLRFWH-----ADHSDEQVEEALARVGLNGFE-DRPVAQLSAGQQRRVALA 137 (201)
T ss_pred ----HHhhh-heEEeccccccCCCcCHHHHHHhhc-----ccccHHHHHHHHHHcCChhhh-cCchhhCCHHHHHHHHHH
Confidence 12343 8999999998888899999996532 111334567788999998655 489999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||+.+|++||||| +||+.++..+.+.|+++ .+.|.|+|++|||... ...+|++++++
T Consensus 138 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~g~tiii~sH~~~~--~~~~~~~~~~~ 198 (201)
T cd03231 138 RLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH---CARGGMVVLTTHQDLG--LSEAGARELDL 198 (201)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEecCchh--hhhccceeEec
Confidence 99999999999999 99999999999999987 3458999999996554 77788888765
No 183
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=321.04 Aligned_cols=217 Identities=13% Similarity=0.139 Sum_probs=168.9
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
++.++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++..
T Consensus 2 ~~~l~~~nl~~~~~~~--~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 2 NNKVKLEQLNVHFGKN--H----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred CcEEEEEEEEEEeCCe--e----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 3468899999999642 2 5999999999999999999999999999999999974 37999999987642
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCcccccccc---ccccccC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKND---AEIDDLK 212 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~---~~~~~~~ 212 (382)
... ....+|+ .++|+||++.+|+..|+.+|+......... . ....+++.++++.+++... ..++.+.
T Consensus 76 ~~~-------~~~~~~~-~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 147 (252)
T PRK14256 76 RGV-------DPVSIRR-RVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAM 147 (252)
T ss_pred ccC-------ChHHhhc-cEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcC
Confidence 110 1112343 799999999999989999999653211111 0 1112345667778887531 2237899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|||++|||++. +..+||++++++
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~----~~~tiiivsH~~~~--~~~~~d~i~~l~ 221 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK----EKYTIIIVTHNMQQ--AARVSDYTAFFY 221 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----hCCcEEEEECCHHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 35899999996555 888999999997
Q ss_pred h---ccccccccee
Q 016817 290 Y---LGVSEISGVY 300 (382)
Q Consensus 290 ~---~~~~~~~~v~ 300 (382)
+ ...+++++++
T Consensus 222 ~G~i~~~~~~~~~~ 235 (252)
T PRK14256 222 MGDLVECGETKKIF 235 (252)
T ss_pred CCEEEEeCCHHHHH
Confidence 6 3344444444
No 184
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=323.83 Aligned_cols=209 Identities=15% Similarity=0.109 Sum_probs=167.2
Q ss_pred cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeec
Q 016817 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTS 134 (382)
Q Consensus 61 ~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~ 134 (382)
....++|+++||+++|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|++
T Consensus 14 ~~~~~~l~~~nl~~~~~~~--~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 14 TATEIKMRARDVSVFYGEK--Q----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED 87 (267)
T ss_pred cCCCceEEEEeEEEEECCE--E----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE
Confidence 3456789999999999642 2 5999999999999999999999999999999999985 58999999987
Q ss_pred CCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--Cc-cccccccccCcccccccc---ccc
Q 016817 135 SGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GV-HHNQRCLRSDDCALMKND---AEI 208 (382)
Q Consensus 135 i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~-~~~~~~~~~l~~~~L~~~---~~~ 208 (382)
+.... .....+|+ .++|++|++.+|+ .|+.+|+.+....... .. ...+++.++++.+++.+. ..+
T Consensus 88 i~~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 158 (267)
T PRK14235 88 IYDPR-------LDVVELRA-RVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLH 158 (267)
T ss_pred Ccccc-------cchHHHhh-ceEEEecCCCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhh
Confidence 64211 01112343 8999999998888 5999999754321111 11 112345678888888531 224
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. .+.|||++|||++. +..+||++
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~----~~~tiiivtH~~~~--~~~~~d~v 232 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR----QNYTIVIVTHSMQQ--AARVSQRT 232 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh----cCCeEEEEEcCHHH--HHhhCCEE
Confidence 7899999999999999999999999999999 999999999999999983 36899999996555 88899999
Q ss_pred hhhhh
Q 016817 286 KICEY 290 (382)
Q Consensus 286 ~ll~~ 290 (382)
+++++
T Consensus 233 ~~l~~ 237 (267)
T PRK14235 233 AFFHL 237 (267)
T ss_pred EEEEC
Confidence 99876
No 185
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.3e-41 Score=384.82 Aligned_cols=238 Identities=15% Similarity=0.092 Sum_probs=193.5
Q ss_pred cchhhhhhhccCCCCccccchhHHHHHHhhhh-h------hc-----CcCchhHHHHHhhhcccCC-eeeecCCcccCCC
Q 016817 27 AKFDECVKLKLDLPNVSTLTPRLRVLREMERL-A------LI-----APDGLNELRHKFLSYRSGD-FWIPIGGIQKGGM 93 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~-----~~~~~i~i~nvs~~y~~~~-~~v~~~vL~~isl 93 (382)
.++..++.+..++..+..+.+|+.++++.++. + .. ...+.|+++||+|+|++.. .+ +|+|+||
T Consensus 1114 ~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~----vL~~lsl 1189 (1466)
T PTZ00265 1114 SYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVP----IYKDLTF 1189 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCc----cccCeeE
Confidence 46777888889999999999999999976431 0 00 1124699999999997532 22 6999999
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhcc-------------------------------------------------
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSR------------------------------------------------- 124 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~------------------------------------------------- 124 (382)
+|++|+++|||||||||||||+++|.|++++
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999983
Q ss_pred ------cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCc
Q 016817 125 ------SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDD 198 (382)
Q Consensus 125 ------~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~ 198 (382)
+|+|++||.++.++.. ..+|+ .||||+|++.||+ .|++|||.+. .....++++.++++
T Consensus 1270 ~~~~~~~G~I~idG~di~~~~~---------~~lR~-~i~~V~Qep~LF~-gTIreNI~~g-----~~~at~eeI~~A~k 1333 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVDICDYNL---------KDLRN-LFSIVSQEPMLFN-MSIYENIKFG-----KEDATREDVKRACK 1333 (1466)
T ss_pred cccCCCCCeEEECCEEHHhCCH---------HHHHh-hccEeCCCCcccc-ccHHHHHhcC-----CCCCCHHHHHHHHH
Confidence 8999999998865442 23665 9999999999997 8999999643 23345567888888
Q ss_pred ccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCC
Q 016817 199 CALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNEN 264 (382)
Q Consensus 199 ~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~ 264 (382)
.+++.+++. ..| .+||||||||++|||||+++|+|||||| +||+++++.|++.|.++. ..+++
T Consensus 1334 ~A~l~~fI~-~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~--~~~~~ 1410 (1466)
T PTZ00265 1334 FAAIDEFIE-SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK--DKADK 1410 (1466)
T ss_pred HcCCHHHHH-hCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh--ccCCC
Confidence 888876554 333 3499999999999999999999999999 999999999999999872 13589
Q ss_pred CeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 265 PILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 265 tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|+||| +++++. .||+|+++++
T Consensus 1411 TvIiIaH--Rlsti~-~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1411 TIITIAH--RIASIK-RSDKIVVFNN 1433 (1466)
T ss_pred EEEEEec--hHHHHH-hCCEEEEEeC
Confidence 9999999 666676 4777777764
No 186
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.3e-41 Score=320.53 Aligned_cols=210 Identities=16% Similarity=0.076 Sum_probs=164.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec-----CCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS-----SGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~-----i~~~ 138 (382)
++++++|++++|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|++ +...
T Consensus 2 ~~l~~~~l~~~~~~~~------~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK------GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL 75 (253)
T ss_pred ceEEEeeeEEEeCCce------EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC
Confidence 4788999999996432 5999999999999999999999999999999999998 89999999975 3211
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccccccccccCCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
...+....+++.++|++|++. +++..++.+|+.+....... . ....+.+.++++.+++.+...++.+.+|
T Consensus 76 ------~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~L 149 (253)
T TIGR02323 76 ------SEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAF 149 (253)
T ss_pred ------CHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhc
Confidence 111221122237999999974 44556788888543211110 0 0122456678889999632234899999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||+||||++. +..+||+++++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tii~vsH~~~~--~~~~~d~~~~l~~ 224 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV--RDLGLAVIIVTHDLGV--ARLLAQRLLVMQQ 224 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 9999999999999999999999999 999999999999999873 3458999999996655 8888999999876
No 187
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=350.72 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=169.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecCCCcccc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i~~~~~~ 141 (382)
++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 4 ~~l~~~nl~~~~~~~--~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-- 75 (506)
T PRK13549 4 YLLEMKNITKTFGGV--K----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN-- 75 (506)
T ss_pred ceEEEeeeEEEeCCe--E----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC--
Confidence 579999999999642 2 5999999999999999999999999999999999987 3999999998764221
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-c---cccccccccCccccccccccccccCCCccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-V---HHNQRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
.. ..+++.+||+||++.+++.+|+.+|+.+........ . ...+++.++++.+++.+.. ++++.+||||
T Consensus 76 ----~~---~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG 147 (506)
T PRK13549 76 ----IR---DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-ATPVGNLGLG 147 (506)
T ss_pred ----HH---HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-ccchhhCCHH
Confidence 01 112237999999999999899999997543211001 0 1124567789999997655 4999999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||||+.+|++||||| +||+.++..+.++|.++ .++|.|||+||||++. +..+||+++++++
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~~~tvi~~tH~~~~--~~~~~d~v~~l~~ 218 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL---KAHGIACIYISHKLNE--VKAISDTICVIRD 218 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCcHHH--HHHhcCEEEEEEC
Confidence 9999999999999999999999 99999999999999998 3468999999996665 8889999999876
No 188
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=351.66 Aligned_cols=205 Identities=14% Similarity=0.080 Sum_probs=169.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++...+.
T Consensus 4 ~~l~~~~l~~~~~~~--~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~--- 74 (510)
T PRK09700 4 PYISMAGIGKSFGPV--H----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDH--- 74 (510)
T ss_pred ceEEEeeeEEEcCCe--E----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCH---
Confidence 578999999999643 2 5999999999999999999999999999999999998 89999999987643221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCc------cccccccccCccccccccccccccCCCc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGV------HHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~------~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
.. .+++.+||+||++.+++.+|+.+|+.+...... .+. ...+++.++++.+|+.+.. ++++.+||
T Consensus 75 ---~~---~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS 147 (510)
T PRK09700 75 ---KL---AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-DEKVANLS 147 (510)
T ss_pred ---HH---HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-ccchhhCC
Confidence 11 122379999999999998999999965321100 010 1124567788999998655 49999999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||+|||||+.+|++||||| +||+.++..+.++|+++ ++.|+|||+||||++. +..+||+++++++
T Consensus 148 gG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tiiivsHd~~~--~~~~~d~v~~l~~ 220 (510)
T PRK09700 148 ISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL---RKEGTAIVYISHKLAE--IRRICDRYTVMKD 220 (510)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999999999 99999999999999998 3358999999996665 8889999999876
No 189
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.2e-41 Score=335.06 Aligned_cols=250 Identities=15% Similarity=0.099 Sum_probs=207.7
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhh-----hhcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCce
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL-----ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G 98 (382)
|...|++.+......+-.+..+..|+.+++...+. +.+.+++.+.++++++.-++.+++ +|+++||++.+|
T Consensus 287 RaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~p----il~~isF~l~~G 362 (580)
T COG4618 287 RALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKP----ILKGISFALQAG 362 (580)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCc----ceecceeEecCC
Confidence 55789999999999999999999999999998875 456678899999999966655544 599999999999
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
|.+|||||||||||||.|+|.|.++ .+|.|.+||-++..+.. .+ += ++|||+||+..||+ .||.|||.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~------e~---lG-~hiGYLPQdVeLF~-GTIaeNIa 431 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR------EQ---LG-RHIGYLPQDVELFD-GTIAENIA 431 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCH------HH---hc-cccCcCcccceecC-CcHHHHHH
Confidence 9999999999999999999999999 89999999998764432 22 22 48999999999999 89999996
Q ss_pred HHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
.+ ....+.+.+.++.+..|.++.+. +.|. .||||||||+++||||..+|.+++||| +||.
T Consensus 432 Rf-----~~~~d~~kIieAA~lAgvHelIl-~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 432 RF-----GEEADPEKVIEAARLAGVHELIL-RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred hc-----cccCCHHHHHHHHHHcChHHHHH-hCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 33 23345566777777777766554 5554 399999999999999999999999999 9999
Q ss_pred CcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 244 KPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 244 ~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
..+..+.+.|.++ +++|.|+|+||| +.+ +...+|+|.+|++ -..|+.++|+
T Consensus 506 ~GE~AL~~Ai~~~---k~rG~~vvviaH--RPs-~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 506 EGEAALAAAILAA---KARGGTVVVIAH--RPS-ALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred hHHHHHHHHHHHH---HHcCCEEEEEec--CHH-HHhhcceeeeecCChHHhcCCHHHHH
Confidence 9999999999998 678999999999 543 4557899999987 3455555555
No 190
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-41 Score=322.42 Aligned_cols=208 Identities=18% Similarity=0.110 Sum_probs=164.9
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
+...+++++|++++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++
T Consensus 9 ~~~~~l~i~nl~~~~~~~--~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i 82 (269)
T PRK14259 9 SKNIIISLQNVTISYGTF--E----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDL 82 (269)
T ss_pred CCCceEEEEeEEEEECCE--E----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 345689999999999643 2 5999999999999999999999999999999999975 589999999875
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccc---cccccccC
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN---DAEIDDLK 212 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~ 212 (382)
.... .....+|+ .++|+||++.+|+ .|+.+|+.+............+++.++++.+++.. ...++++.
T Consensus 83 ~~~~-------~~~~~~~~-~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 153 (269)
T PRK14259 83 YDPR-------VDPVEVRR-RIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGY 153 (269)
T ss_pred cccc-------CCHHHHhh-ceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcc
Confidence 3210 01112444 7999999998888 59999997643211111111234455677776531 12348899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ + ++.|||++|||++. +..+||++++|+
T Consensus 154 ~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~-~~~tiiivtH~~~~--~~~~~d~i~~l~ 227 (269)
T PRK14259 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL---K-KNFTIVIVTHNMQQ--AVRVSDMTAFFN 227 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHHhcCEEEEEe
Confidence 999999999999999999999999999 99999999999999997 2 36899999996655 889999999998
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 228 ~ 228 (269)
T PRK14259 228 A 228 (269)
T ss_pred c
Confidence 5
No 191
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.4e-41 Score=308.20 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=158.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...
T Consensus 1 ml~~~~l~~~~~~~~------il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~------ 68 (200)
T PRK13540 1 MLDVIELDFDYHDQP------LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD------ 68 (200)
T ss_pred CEEEEEEEEEeCCee------EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC------
Confidence 467899999996432 5999999999999999999999999999999999998 899999999865321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
...+++ .++|++|++.+++..|+.+|+.+.... . .....+.++++.+++.+.. ++++.+|||||+||++|
T Consensus 69 ----~~~~~~-~i~~~~q~~~~~~~~tv~~~~~~~~~~---~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rv~l 138 (200)
T PRK13540 69 ----LCTYQK-QLCFVGHRSGINPYLTLRENCLYDIHF---S-PGAVGITELCRLFSLEHLI-DYPCGLLSSGQKRQVAL 138 (200)
T ss_pred ----HHHHHh-heEEeccccccCcCCCHHHHHHHHHhc---C-cchHHHHHHHHHcCCchhh-hCChhhcCHHHHHHHHH
Confidence 112444 899999999888889999998754211 1 1223567788888887654 48889999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||++||+... +..+|-.+
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH---RAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH---HHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999 99999999999999997 3468999999997666 65544333
No 192
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=321.38 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=163.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~ 139 (382)
+++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 4 ~l~i~~v~~~~~~~~------~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGSFH------AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECCEe------eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 688999999996432 5999999999999999999999999999999999985 3999999998653210
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccc---cccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKN---DAEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~---~~~~~~~~~L 214 (382)
. ....+++ .++|+||++.+|+..|+.+|+.+....... ....++.+.++++.+++.+ ...++++.+|
T Consensus 78 ----~---~~~~~~~-~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 149 (258)
T PRK14241 78 ----V---DPVAVRR-TIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGL 149 (258)
T ss_pred ----c---ChHHHhc-ceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC
Confidence 0 0112343 899999999999989999999754321110 1111234566788888742 1234889999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. +++|||+||||++. +.++||++++++
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tviivsH~~~~--~~~~~d~i~~l~ 221 (258)
T PRK14241 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK----QDYTIVIVTHNMQQ--AARVSDQTAFFN 221 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHH--HHHhCCEEEEEe
Confidence 9999999999999999999999999 999999999999999982 35899999996555 888999999885
No 193
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=320.95 Aligned_cols=217 Identities=12% Similarity=0.139 Sum_probs=169.1
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++++++|+++.|+... +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.
T Consensus 9 ~~~~l~i~~l~~~~~~~~------~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHH------ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred CCceEEEeeEEEEECCee------eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 345899999999996432 5999999999999999999999999999999999985 3899999998763
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---cccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDL 211 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~ 211 (382)
... .....+|+ .+||+||++.+|+ .|+.+|+.+......... ...+++.++++.+++.+. ..++.+
T Consensus 83 ~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~ 153 (259)
T PRK14274 83 KGK-------VDLVELRK-NIGMVFQKGNPFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA 153 (259)
T ss_pred ccc-------cCHHHHhh-ceEEEecCCcccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc
Confidence 210 01112344 8999999998888 499999965432111000 112335566777777531 234889
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+||||||||++|||||+.+|++||||| +||+.++..+.+.|+++ . .+.|+|+||||++. +.++||++++|
T Consensus 154 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiiivtH~~~~--~~~~~d~i~~l 227 (259)
T PRK14274 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL---K-EKYTIVIVTHNMQQ--AARVSDQTAFF 227 (259)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---h-cCCEEEEEEcCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3 36899999996554 88899999999
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..+++++++
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 76 3445555554
No 194
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.2e-41 Score=313.86 Aligned_cols=195 Identities=14% Similarity=0.153 Sum_probs=164.4
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.. . +|+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 1 l~l~~v~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~------- 67 (223)
T TIGR03740 1 LETKNLSKRFGKQ--T----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK------- 67 (223)
T ss_pred CEEEeEEEEECCE--E----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc-------
Confidence 3578999999642 2 5999999999999999999999999999999999998 899999999854310
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
.+ +.++|+||++.+++..|+.+|+....... + ....++.++++.+++.+..+ +.+.+|||||+||++||
T Consensus 68 ------~~-~~~~~~~q~~~~~~~~t~~~~~~~~~~~~--~-~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~la 136 (223)
T TIGR03740 68 ------DL-HKIGSLIESPPLYENLTARENLKVHTTLL--G-LPDSRIDEVLNIVDLTNTGK-KKAKQFSLGMKQRLGIA 136 (223)
T ss_pred ------cc-ccEEEEcCCCCccccCCHHHHHHHHHHHc--C-CCHHHHHHHHHHcCCcHHHh-hhHhhCCHHHHHHHHHH
Confidence 01 27999999998888899999996543211 1 12345677889999986654 89999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||++.+|++||||| +||+.++..+.+.|+++ .+.|.|||++|||++. +..+||+++++++
T Consensus 137 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~---~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 199 (223)
T TIGR03740 137 IALLNHPKLLILDEPTNGLDPIGIQELRELIRSF---PEQGITVILSSHILSE--VQQLADHIGIISE 199 (223)
T ss_pred HHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHH---HHCCCEEEEEcCCHHH--HHHhcCEEEEEeC
Confidence 99999999999999 99999999999999998 3358999999996665 8889999998876
No 195
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-41 Score=311.07 Aligned_cols=199 Identities=16% Similarity=0.042 Sum_probs=161.4
Q ss_pred HHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhh
Q 016817 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEH 149 (382)
Q Consensus 71 nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~ 149 (382)
||+|+|++.. + |+||+|++ |+++|+||||||||||+++|+|+++ ++|+|.++|.++...... ...
T Consensus 5 ~l~~~~~~~~-------~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-----~~~ 70 (214)
T cd03297 5 DIEKRLPDFT-------L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKK-----INL 70 (214)
T ss_pred eeeEecCCee-------e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccch-----hhh
Confidence 8899996533 4 99999999 9999999999999999999999999 899999999875421100 011
Q ss_pred hhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh
Q 016817 150 NVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229 (382)
Q Consensus 150 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~ 229 (382)
...++ .++|++|++.+|+.+|+.+|+.+..... .....++++.++++.+++.+... +++.+||||||||++|||||+
T Consensus 71 ~~~~~-~i~~~~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 71 PPQQR-KIGLVFQQYALFPHLNVRENLAFGLKRK-RNREDRISVDELLDLLGLDHLLN-RYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred hhHhh-cEEEEecCCccCCCCCHHHHHHHHHhhC-CHHHHHHHHHHHHHHcCCHhHhh-cCcccCCHHHHHHHHHHHHHh
Confidence 12343 8999999999998899999997543111 11112345677889999986554 899999999999999999999
Q ss_pred hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 230 NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 230 ~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.+|++||||| +||+.++..+.++|+++. ++.|+|||++|||++. +..+||+++++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 207 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIK--KNLNIPVIFVTHDLSE--AEYLADRIVVMED 207 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCcEEEEEecCHHH--HHHhcCEEEEEEC
Confidence 9999999999 999999999999999983 3348999999996655 8888999998875
No 196
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=326.55 Aligned_cols=204 Identities=15% Similarity=0.058 Sum_probs=164.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c--------cceeeeEeecCC
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R--------SGLVLFAQTSSG 136 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~--------~G~I~i~G~~i~ 136 (382)
|++++|++++|++. . +|+++||+|++|++++|+||||||||||+|+|+|+++ + +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~~~--~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARRHR--A----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEECCE--e----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 47789999999543 2 5999999999999999999999999999999999998 6 899999998653
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--C---ccccccccccCcccccccccccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--G---VHHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~---~~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
... . ...++ .++|+||++.+++.+|+.+|+.+....... . ....+.+.++++.+++.+... +++
T Consensus 75 ~~~------~---~~~~~-~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~ 143 (272)
T PRK13547 75 AID------A---PRLAR-LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG-RDV 143 (272)
T ss_pred cCC------H---HHHHh-hcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc-CCc
Confidence 211 1 11333 689999998755558999999653211100 0 111234667888999987654 899
Q ss_pred CCCccceeeecceeeeeh---------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhh
Q 016817 212 KSSPKYVLRRVDFAMVVS---------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEE 279 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~---------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~ 279 (382)
.+|||||||||+|||||+ .+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +.
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tviiisH~~~~--~~ 219 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLA--RDWNLGVLAIVHDPNL--AA 219 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHH--HhcCCEEEEEECCHHH--HH
Confidence 999999999999999999 4999999999 999999999999999983 3348999999996655 88
Q ss_pred hhhhhhhhhhh
Q 016817 280 RLDARLKICEY 290 (382)
Q Consensus 280 ~~~d~v~ll~~ 290 (382)
++||+++++++
T Consensus 220 ~~~d~i~~l~~ 230 (272)
T PRK13547 220 RHADRIAMLAD 230 (272)
T ss_pred HhCCEEEEEEC
Confidence 89999999976
No 197
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=327.21 Aligned_cols=226 Identities=13% Similarity=0.126 Sum_probs=170.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+.|+++|++++|+++... ..++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.++.....
T Consensus 5 ~~l~i~nl~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~--- 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPF-EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK--- 80 (289)
T ss_pred ceEEEEEEEEEeCCCCcc-ccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc---
Confidence 468899999999643200 0015999999999999999999999999999999999998 89999999987531100
Q ss_pred ehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
.......+|+ .++|++|++. +++ .|+.+|+.+........ ....+++.++++.+++.+...++++.+|||||||
T Consensus 81 -~~~~~~~~~~-~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 81 -KIKEVKRLRK-EIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred -ccccHHHHhc-cEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHH
Confidence 0001122444 7999999963 454 69999997543211111 1112345667888898532334899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +.++||+++++++ +..+
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tiiiisH~~~~--~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLN--KEYKKRIIMVTHNMDQ--VLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999 999999999999999983 3358999999996554 8889999999987 3344
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
++.+++.
T Consensus 234 ~~~~~~~ 240 (289)
T PRK13645 234 SPFEIFS 240 (289)
T ss_pred CHHHHhc
Confidence 4444543
No 198
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.2e-41 Score=350.04 Aligned_cols=203 Identities=12% Similarity=0.017 Sum_probs=170.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 9 ~~~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-- 80 (510)
T PRK15439 9 PPLLCARSISKQYSGVE------VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP-- 80 (510)
T ss_pred CceEEEEeEEEEeCCce------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH--
Confidence 45899999999996432 5999999999999999999999999999999999998 89999999987642211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
. ..+++.+||++|++.+++.+|+.+|+.+... ......+++.++++.+++.+... +++.+|||||||||
T Consensus 81 ----~---~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv 149 (510)
T PRK15439 81 ----A---KAHQLGIYLVPQEPLLFPNLSVKENILFGLP---KRQASMQKMKQLLAALGCQLDLD-SSAGSLEVADRQIV 149 (510)
T ss_pred ----H---HHHhCCEEEEeccCccCCCCcHHHHhhcccc---cchHHHHHHHHHHHHcCCCcccc-CChhhCCHHHHHHH
Confidence 1 1222369999999999999999999965321 11112345677899999986654 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|||+||||++. +..+||+++++++
T Consensus 150 ~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~g~tiiivtHd~~~--~~~~~d~i~~l~~ 215 (510)
T PRK15439 150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIREL---LAQGVGIVFISHKLPE--IRQLADRISVMRD 215 (510)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999 99999999999999998 3458999999996666 8889999999976
No 199
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=319.23 Aligned_cols=215 Identities=15% Similarity=0.135 Sum_probs=166.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--c----cceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--R----SGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~----~G~I~i~G~~i~~~ 138 (382)
++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+.+ + +|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~------~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 4 PILQVSDLSVYYNKKK------ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77 (252)
T ss_pred ceEEEEeeEEEECCee------eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc
Confidence 4789999999996432 5999999999999999999999999999999999853 2 89999999876421
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCccccccc---cccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKN---DAEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~---~~~~~~~~~ 213 (382)
. .....+|+ .++|+||++.+|+ .|+.+|+.+......... ...+.+.++++.+++.+ ...++.+.+
T Consensus 78 ~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 148 (252)
T PRK14239 78 R-------TDTVDLRK-EIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG 148 (252)
T ss_pred c-------cchHhhhh-cEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCccc
Confidence 1 01112343 7999999998887 899999975432111111 11234455677777642 123488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.++|+++. ++.|||++|||++. +..+||+++++++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~--~~~~~d~i~~l~~ 222 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK----DDYTMLLVTRSMQQ--ASRISDRTGFFLD 222 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh----hCCeEEEEECCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999 999999999999999972 35899999996554 8889999999986
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..++..+++
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T PRK14239 223 GDLIEYNDTKQMF 235 (252)
T ss_pred CEEEEeCCHHHHH
Confidence 3344444444
No 200
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-41 Score=388.84 Aligned_cols=248 Identities=13% Similarity=0.137 Sum_probs=201.2
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------c----CcCchhHHHHHhhhcccCCeeeecCCcccCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------I----APDGLNELRHKFLSYRSGDFWIPIGGIQKGG 92 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~i~i~nvs~~y~~~~~~v~~~vL~~is 92 (382)
.+..|+..+......++....+.+|+.++++.+++.. + +..+.|+++||+++|+.+..+ +|+|+|
T Consensus 1181 ~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~----vL~~is 1256 (1495)
T PLN03232 1181 NITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPP----VLHGLS 1256 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCc----ccccce
Confidence 3556777777788888889999999999987665311 1 113469999999999654333 699999
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|+|++||.+|||||||||||||+++|.|+++ ++|+|.+||.|+.+.+. ..+|+ +++||+|++.+|+ .|
T Consensus 1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~---------~~lR~-~i~iVpQdp~LF~-gT 1325 (1495)
T PLN03232 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL---------TDLRR-VLSIIPQSPVLFS-GT 1325 (1495)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCH---------HHHHh-hcEEECCCCeeeC-cc
Confidence 9999999999999999999999999999999 89999999998765432 23665 8999999999998 69
Q ss_pred hhhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh-
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK- 239 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE- 239 (382)
+++|+... ....++++.++++.+++.+++. +.| ..||||||||++|||||+++|+||||||
T Consensus 1326 Ir~NL~~~------~~~sdeei~~al~~a~l~~~I~-~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEA 1398 (1495)
T PLN03232 1326 VRFNIDPF------SEHNDADLWEALERAHIKDVID-RNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEA 1398 (1495)
T ss_pred HHHHcCCC------CCCCHHHHHHHHHHcCCHHHHH-hCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 99999532 1234566778888888766543 333 3599999999999999999999999999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
+||+++...|++.|++.. +++|+|+||| +++++.. +|+|++|++ +..|++++.+
T Consensus 1399 TSaLD~~Te~~Iq~~L~~~~----~~~TvI~IAH--Rl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1399 TASVDVRTDSLIQRTIREEF----KSCTMLVIAH--RLNTIID-CDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEEeC--CHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999863 5899999999 6766876 788888876 5566666665
No 201
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=319.26 Aligned_cols=215 Identities=14% Similarity=0.122 Sum_probs=167.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh---cc---cceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL---SR---SGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~---~~---~G~I~i~G~~i~~~ 138 (382)
++++++|+++.|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+. ++ +|+|.++|+++...
T Consensus 2 ~~l~~~~~~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGDF--H----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECCE--e----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 478899999999643 2 599999999999999999999999999999999973 42 89999999876421
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---ccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~~~ 213 (382)
. .....+++ .++|+||++.+|+ .|+.+|+.+......... ...+.+.++++.+++.+. ..++++.+
T Consensus 76 ~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 146 (250)
T PRK14245 76 G-------VQVDELRK-NVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFA 146 (250)
T ss_pred c-------ccHHHHhh-heEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCccc
Confidence 1 01122343 7999999998887 699999975432111001 112345677888887532 23478999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . +++|||+||||++. +.++||+++++++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiiivtH~~~~--~~~~~d~v~~l~~ 220 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL---K-KDYTIVIVTHNMQQ--AARVSDKTAFFYM 220 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEeCCHHH--HHhhCCEEEEEEC
Confidence 99999999999999999999999999 99999999999999998 2 36899999996555 8889999999976
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..+.+++++
T Consensus 221 G~~~~~~~~~~~~ 233 (250)
T PRK14245 221 GEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEECCHHHHh
Confidence 4444555554
No 202
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.2e-41 Score=348.38 Aligned_cols=223 Identities=13% Similarity=0.065 Sum_probs=175.2
Q ss_pred cCchhHHHHHhhhcccC---------CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEee
Q 016817 63 PDGLNELRHKFLSYRSG---------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT 133 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~---------~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~ 133 (382)
..++++++|+++.|+.+ ... +|+++||+|++||+++|+||||||||||+|+|+|+++++|+|+++|+
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~ 347 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNV----VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQ 347 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccce----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCE
Confidence 34589999999999631 222 59999999999999999999999999999999999888999999998
Q ss_pred cCCCcccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc--C-ccccccccccCccccccccccc
Q 016817 134 SSGNSSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE--G-VHHNQRCLRSDDCALMKNDAEI 208 (382)
Q Consensus 134 ~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~--~-~~~~~~~~~~l~~~~L~~~~~~ 208 (382)
++...+ ......+|. .+||+||++ .+++.+|+.+|+.+....... . ...++++.++++.+++.+...+
T Consensus 348 ~i~~~~------~~~~~~~~~-~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 420 (529)
T PRK15134 348 PLHNLN------RRQLLPVRH-RIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH 420 (529)
T ss_pred Eccccc------hhhHHHhhh-ceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh
Confidence 764321 111112343 799999997 478889999999764321110 1 1122456778999999632234
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+||++
T Consensus 421 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tvi~vsHd~~~--~~~~~d~i 496 (529)
T PRK15134 421 RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQ--QKHQLAYLFISHDLHV--VRALCHQV 496 (529)
T ss_pred cCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHH--HhhCCEEEEEeCCHHH--HHHhcCeE
Confidence 8999999999999999999999999999999 999999999999999983 3358999999996666 88899999
Q ss_pred hhhhh---ccccccccee
Q 016817 286 KICEY---LGVSEISGVY 300 (382)
Q Consensus 286 ~ll~~---~~~~~~~~v~ 300 (382)
++|++ +..+++.+++
T Consensus 497 ~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 497 IVLRQGEVVEQGDCERVF 514 (529)
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 99976 3344444444
No 203
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.8e-41 Score=357.44 Aligned_cols=239 Identities=16% Similarity=0.150 Sum_probs=189.1
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhh----h----cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA----L----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
++..|+.+++.....+..+..+.+|+.++++.++.. . ....+.|+++||+|+|+++. + +|+|+||++
T Consensus 284 ~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-~----iL~~inl~i 358 (588)
T PRK13657 284 LLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR-Q----GVEDVSFEA 358 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCC-c----eecceeEEE
Confidence 467788888888888888888888888777653321 0 01123699999999997432 2 599999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++|++++|+||||||||||+|+|+|+++ ++|+|.+||+++.+... ..+|+ .|+|++|++.+|+ .|+++
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~---------~~~r~-~i~~v~Q~~~lf~-~Ti~~ 427 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR---------ASLRR-NIAVVFQDAGLFN-RSIED 427 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCH---------HHHHh-heEEEecCccccc-ccHHH
Confidence 9999999999999999999999999999 89999999998764432 22555 8999999999997 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccc------c----cccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE------I----DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~------~----~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|+.+. .+...++++.++++.+++.+.+. | .....||||||||++|||||+++|++||||| +|
T Consensus 428 Ni~~~-----~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~L 502 (588)
T PRK13657 428 NIRVG-----RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSAL 502 (588)
T ss_pred HHhcC-----CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 99542 22234456667777777654332 0 2233599999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+++.|.++. +++|+|+|||++.. + +.+|+|++|++
T Consensus 503 D~~t~~~i~~~l~~~~----~~~tvIiitHr~~~--~-~~~D~ii~l~~ 544 (588)
T PRK13657 503 DVETEAKVKAALDELM----KGRTTFIIAHRLST--V-RNADRILVFDN 544 (588)
T ss_pred CHHHHHHHHHHHHHHh----cCCEEEEEEecHHH--H-HhCCEEEEEEC
Confidence 9999999999998862 47999999995543 5 46888888876
No 204
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-41 Score=321.79 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=163.7
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
+.+++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|+++
T Consensus 17 ~~~~~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 17 AKEHILEVKDLSIYYGEKR------AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred CCCceEEEEEEEEEeCCce------eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 3456899999999996432 5999999999999999999999999999999999863 589999999876
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC--ccccccccccCccccccc---cccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG--VHHNQRCLRSDDCALMKN---DAEIDD 210 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~--~~~~~~~~~~l~~~~L~~---~~~~~~ 210 (382)
.... .....+++ .++|++|++.+|+ .|+.+|+.......... ...++.+.++++.+++.. ...+++
T Consensus 91 ~~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 161 (268)
T PRK14248 91 LDSN-------INVVNLRR-EIGMVFQKPNPFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSS 161 (268)
T ss_pred cccc-------ccHHHHhc-cEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC
Confidence 4211 11112343 7999999998888 59999997542111100 011233455667777642 123488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. .+.|||++|||++. +..+||++++
T Consensus 162 ~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~--~~~~~d~v~~ 235 (268)
T PRK14248 162 ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK----EEYSIIIVTHNMQQ--ALRVSDRTAF 235 (268)
T ss_pred cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh----cCCEEEEEEeCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 999999999999999982 35899999996555 8889999999
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 236 l~~ 238 (268)
T PRK14248 236 FLN 238 (268)
T ss_pred EEC
Confidence 976
No 205
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=331.43 Aligned_cols=219 Identities=15% Similarity=0.151 Sum_probs=173.1
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++|+++|++++|..+..+ +|+|+||+|++||++||+||||||||||+++|+|+.+ ++|+|.++|+++.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~----~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKH----VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred cCceEEEEeeEEEecCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 35689999999999643323 5999999999999999999999999999999999985 3899999999764
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcccc----ccccccCcccccc----ccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHN----QRCLRSDDCALMK----NDAEI 208 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~----~~~~~~l~~~~L~----~~~~~ 208 (382)
... .....+|+ .++|+||++.+|+ .|+++|+.+... + .+...+ +.+.++++.+++. ..+.
T Consensus 153 ~~~-------~~~~~lr~-~i~~v~q~~~~~~-~ti~eNi~~~~~-~-~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~- 220 (329)
T PRK14257 153 SKK-------ISSLELRT-RIGMVFQKPTPFE-MSIFDNVAYGPR-N-NGINDRKILEKIVEKSLKSAALWDEVKDDLD- 220 (329)
T ss_pred ccc-------cchHhhhc-cEEEEecCCccCC-CcHHHHHHhHHH-h-cCCChHHHHHHHHHHHHHHcCCcchhhhhhh-
Confidence 211 11112454 8999999999986 899999975431 1 111111 1245566766663 2333
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||||||+|||||+.+|+|||||| +||+.+...+.+.|+++. +++|||+|||+++. +.++||+|
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~----~~~Tii~iTH~l~~--i~~~~Dri 294 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK----KKYSIIIVTHSMAQ--AQRISDET 294 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHH--HHHhCCEE
Confidence 7889999999999999999999999999999 999999999999999873 36899999995555 88889999
Q ss_pred hhhhh---cccccccceeeEE
Q 016817 286 KICEY---LGVSEISGVYDIV 303 (382)
Q Consensus 286 ~ll~~---~~~~~~~~v~~~~ 303 (382)
++|++ +..+++.++++.|
T Consensus 295 ivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 295 VFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred EEEECCEEEEeCCHHHHhcCC
Confidence 99987 5667777777543
No 206
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.4e-41 Score=353.47 Aligned_cols=241 Identities=15% Similarity=0.108 Sum_probs=191.6
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-----cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCc
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPP 97 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~ 97 (382)
+++..|+..+......+..+..+.+|+.++++.++... +...+.++++|++|+|+.++.+ +|+|+||++++
T Consensus 268 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~----~l~~~~~~i~~ 343 (544)
T TIGR01842 268 GRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKP----TLRGISFRLQA 343 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCCcc----ccccceEEEcC
Confidence 46778999999999999999999999999987654311 1123469999999999754333 59999999999
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
|+.++|+||||||||||+++|+|+++ ++|+|.++|.++.+... ..+|+ .++|++|++.+|+ .|+++|+
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~---------~~~~~-~i~~v~q~~~lf~-~ti~~Ni 412 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR---------ETFGK-HIGYLPQDVELFP-GTVAENI 412 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH---------HHHhh-heEEecCCccccc-ccHHHHH
Confidence 99999999999999999999999999 89999999997654321 22454 8999999999998 5999999
Q ss_pred HHHHhhhhcCccccccccccCccccccc-----------cccccccCCCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 177 EELSSWMSEGVHHNQRCLRSDDCALMKN-----------DAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
.... ....++++.++++.+++.+ ... .....||||||||++|||||+++|++||||| +||
T Consensus 413 ~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~-~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD 486 (544)
T TIGR01842 413 ARFG-----ENADPEKIIEAAKLAGVHELILRLPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486 (544)
T ss_pred hccC-----CCCCHHHHHHHHHHhChHHHHHhCccccccccC-CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccC
Confidence 6321 1123334444455444432 222 4456799999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.++..+.+.|+++ ..+|+|+|+|||++. .+. .||+++++++
T Consensus 487 ~~~~~~i~~~l~~~---~~~~~tvi~ith~~~--~~~-~~d~i~~l~~ 528 (544)
T TIGR01842 487 EEGEQALANAIKAL---KARGITVVVITHRPS--LLG-CVDKILVLQD 528 (544)
T ss_pred HHHHHHHHHHHHHH---hhCCCEEEEEeCCHH--HHH-hCCEEEEEEC
Confidence 99999999999987 335799999999554 354 6888888876
No 207
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.1e-41 Score=312.69 Aligned_cols=206 Identities=18% Similarity=0.160 Sum_probs=166.5
Q ss_pred hHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++|+++.|+.+. .. +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 2 l~~~~l~~~~~~~~~~~~----il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~---- 73 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQ----VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGAS---- 73 (220)
T ss_pred EEEEEEEEEccCCCccee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcC----
Confidence 56789999996432 22 5999999999999999999999999999999999999 8999999998654221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc---ccccccccCccccccccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH---HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
.......++ .++|+||++.+|+.+|+.+|+.+..... .... ..+.+.++++.+|+.+... +++.+|||||||
T Consensus 74 --~~~~~~~~~-~i~~~~q~~~~~~~~t~~~n~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~q 148 (220)
T TIGR02982 74 --EKELVQLRR-NIGYIFQAHNLLGFLTARQNVQMALELQ-PNLSYQEARERARAMLEAVGLGDHLD-YYPHNLSGGQKQ 148 (220)
T ss_pred --HhHHHHHHh-heEEEcCChhhcCCCCHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHH
Confidence 111112343 8999999999998899999997643211 1111 1235677889999986655 899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|||||+.+|++||||| +||+.++..+.+.|+++. ++.++|||++|||++. . ++||+++++++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tii~~sh~~~~--~-~~~d~v~~l~~ 216 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA--REQGCTILIVTHDNRI--L-DVADRIVHMED 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--H-hhCCEEEEEEC
Confidence 9999999999999999999 999999999999999983 3358999999997653 4 68999888864
No 208
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.6e-41 Score=355.01 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=195.5
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhh------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++..|+.+++.....+..+..+.+|+.++++.++.. .+...+.|+++|++|+|+.++.+ +|+|+||+++
T Consensus 264 ~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~~----~l~~i~~~i~ 339 (569)
T PRK10789 264 GLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHP----ALENVNFTLK 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCCc----cccCeeEEEC
Confidence 4567899999999999999999999999998765431 11123468999999999754333 5999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+|++++|+||||||||||+++|+|+++ ++|+|.++|+++.+.. ...+|+ .++|++|++.+|+ .|+++|
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~---------~~~~~~-~i~~v~q~~~lf~-~ti~~N 408 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ---------LDSWRS-RLAVVSQTPFLFS-DTVANN 408 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCC---------HHHHHh-heEEEccCCeecc-ccHHHH
Confidence 999999999999999999999999999 8999999999765332 122555 8999999999998 699999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
+... .....++.+.++++.+++.+.+. +.....||||||||++|||||+++|++||||| +||
T Consensus 409 i~~~-----~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 409 IALG-----RPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred HhcC-----CCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 9542 12223445555666666543322 13345699999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
+.++..+.+.|+++. +|+|+|+|||+++ .+. .+|+++++++ +..++.+++
T Consensus 484 ~~~~~~i~~~l~~~~----~~~tii~itH~~~--~~~-~~d~i~~l~~G~i~~~g~~~~l 536 (569)
T PRK10789 484 GRTEHQILHNLRQWG----EGRTVIISAHRLS--ALT-EASEILVMQHGHIAQRGNHDQL 536 (569)
T ss_pred HHHHHHHHHHHHHHh----CCCEEEEEecchh--HHH-cCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999872 5899999999554 365 5788888875 344443333
No 209
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=305.97 Aligned_cols=205 Identities=14% Similarity=0.175 Sum_probs=178.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
++++++|+|+|++.. |++|+||++++|+++|++|||||||||++|+|.|++. ++|+|.++|.++...
T Consensus 2 ~L~ie~vtK~Fg~k~------av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~------ 69 (300)
T COG4152 2 ALEIEGVTKSFGDKK------AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE------ 69 (300)
T ss_pred ceEEecchhccCcee------eecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh------
Confidence 578999999997654 7999999999999999999999999999999999999 899999999865311
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+. +|||+|.+-.|++.+||.|.+.+++...+. ......++..+|+++++..... +++.+||.|++|++.
T Consensus 70 -------~~~-rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~-~kIk~LSKGnqQKIQ 140 (300)
T COG4152 70 -------IKN-RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT-KKIKELSKGNQQKIQ 140 (300)
T ss_pred -------hhh-hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccccc-chHHHhhhhhhHHHH
Confidence 233 899999999999999999999887754432 1223356778999999987765 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEI 296 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~ 296 (382)
+-.+++++|+++|||| ||||.+.+.+.+.+.++ ++.|.|||++|| +++.+.++||++++++. +..|+.
T Consensus 141 fisaviHePeLlILDEPFSGLDPVN~elLk~~I~~l---k~~GatIifSsH--~Me~vEeLCD~llmL~kG~~V~~G~v 214 (300)
T COG4152 141 FISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL---KEEGATIIFSSH--RMEHVEELCDRLLMLKKGQTVLYGTV 214 (300)
T ss_pred HHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHH---HhcCCEEEEecc--hHHHHHHHhhhhheecCCceEEeccH
Confidence 9999999999999999 99999999999999998 678999999999 55559999999999987 545443
No 210
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-41 Score=317.96 Aligned_cols=216 Identities=14% Similarity=0.077 Sum_probs=168.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
.++++++|++++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~--~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGEK--Q----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECCe--e----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 3578899999999642 2 5999999999999999999999999999999999975 48999999987642
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccc---cccccccC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKN---DAEIDDLK 212 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~---~~~~~~~~ 212 (382)
.. ......++ .++|+||++.+|+ .|+.+|+.+....... . ....+++.++++.+++.+ ...++++.
T Consensus 76 ~~-------~~~~~~~~-~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 146 (251)
T PRK14270 76 KD-------VDVVELRK-RVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSAL 146 (251)
T ss_pred cc-------ccHHHHHh-heEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcc
Confidence 11 11112343 7999999999888 8999999754321111 0 011234556778887642 12348899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||+||||++. +..+||++++++
T Consensus 147 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~---~-~~tiiivsH~~~~--~~~~~d~v~~l~ 220 (251)
T PRK14270 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK---K-EYTIVIVTHNMQQ--ASRVSDYTAFFL 220 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---h-CCeEEEEEcCHHH--HHHhcCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 2 5899999996555 888999999998
Q ss_pred h---ccccccccee
Q 016817 290 Y---LGVSEISGVY 300 (382)
Q Consensus 290 ~---~~~~~~~~v~ 300 (382)
+ +..+++.+++
T Consensus 221 ~G~i~~~~~~~~~~ 234 (251)
T PRK14270 221 MGDLIEFNKTEKIF 234 (251)
T ss_pred CCeEEEeCCHHHHh
Confidence 7 3444554454
No 211
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-41 Score=313.94 Aligned_cols=201 Identities=17% Similarity=0.089 Sum_probs=165.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|+.. + +++++||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++.....
T Consensus 1 l~~~~l~~~~~~~--~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~----- 69 (232)
T cd03300 1 IELENVSKFYGGF--V----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP----- 69 (232)
T ss_pred CEEEeEEEEeCCe--e----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh-----
Confidence 3578999999643 2 5999999999999999999999999999999999999 89999999987643211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.++|++|++.+|+.+|+.+|+.+...... ......+.+.++++.+|+.+... +.+.+|||||+||++|
T Consensus 70 ------~~-~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~l 141 (232)
T cd03300 70 ------HK-RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-RKPSQLSGGQQQRVAI 141 (232)
T ss_pred ------hh-cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHH
Confidence 12 379999999999988899999965432111 01112345667888999986655 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++||++.. +..+||+++++++
T Consensus 142 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~~~tiii~sh~~~~--~~~~~d~i~~l~~ 206 (232)
T cd03300 142 ARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ--KELGITFVFVTHDQEE--ALTMSDRIAVMNK 206 (232)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEeCCHHH--HHHhcCEEEEEEC
Confidence 999999999999999 999999999999999983 3348999999995554 8889999998876
No 212
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-41 Score=317.55 Aligned_cols=204 Identities=17% Similarity=0.124 Sum_probs=161.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~ 139 (382)
+++++||++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGDFQ------ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECCce------eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 578999999996432 5999999999999999999999999999999999875 3899999998764210
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC--ccccccccccCccccccc---cccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG--VHHNQRCLRSDDCALMKN---DAEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~--~~~~~~~~~~l~~~~L~~---~~~~~~~~~L 214 (382)
.....+|+ .++|++|++.+|+ .|+.+|+.+........ ....+.+.++++.+++.+ ...++++.+|
T Consensus 77 -------~~~~~~~~-~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 147 (250)
T PRK14240 77 -------IDVNQLRK-RVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGL 147 (250)
T ss_pred -------cchHHHhc-cEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCC
Confidence 01112344 7999999998888 89999997643211110 011234555666776632 1224889999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . ++.|||+||||++. +..+||+++++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~sH~~~~--~~~~~d~v~~l~~ 220 (250)
T PRK14240 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL---K-KDYTIVIVTHNMQQ--ASRISDKTAFFLN 220 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEEeCHHH--HHhhCCEEEEEEC
Confidence 9999999999999999999999999 99999999999999998 3 37899999996554 8889999999876
No 213
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.8e-41 Score=322.81 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=169.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
.|+++|++++|+.+... +|+|+||+|++||+++|+||||||||||+++|+|+++++|+|+++|.++....
T Consensus 2 ~i~~~nls~~~~~~~~~----~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~------ 71 (275)
T cd03289 2 QMTVKDLTAKYTEGGNA----VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVP------ 71 (275)
T ss_pred eEEEEEEEEEeCCCCCc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCC------
Confidence 36789999999643322 59999999999999999999999999999999999988899999998764221
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCC-----------C
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-----------S 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----------L 214 (382)
...+|+ .++|+||++.+|+ .|+++|+.... ....+++.++++.+||.+... ++|.+ |
T Consensus 72 ---~~~lr~-~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~~~~~~~l~~~gL~~~~~-~~p~~l~~~~~~~g~~L 139 (275)
T cd03289 72 ---LQKWRK-AFGVIPQKVFIFS-GTFRKNLDPYG------KWSDEEIWKVAEEVGLKSVIE-QFPGQLDFVLVDGGCVL 139 (275)
T ss_pred ---HHHHhh-hEEEECCCcccch-hhHHHHhhhcc------CCCHHHHHHHHHHcCCHHHHH-hCcccccceecCCCCCC
Confidence 122454 8999999999998 69999995321 112345677888899987655 88877 9
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
|||||||++|||||+.+|+|||||| +||+.++..+.+.|+++ . .++|||+|||+++. +.. ||+|++|++
T Consensus 140 S~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~---~-~~~tii~isH~~~~--i~~-~dri~vl~~G 212 (275)
T cd03289 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA---F-ADCTVILSEHRIEA--MLE-CQRFLVIEEN 212 (275)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh---c-CCCEEEEEECCHHH--HHh-CCEEEEecCC
Confidence 9999999999999999999999999 99999999999999986 2 47999999996544 764 899999976
Q ss_pred --cccccccceee
Q 016817 291 --LGVSEISGVYD 301 (382)
Q Consensus 291 --~~~~~~~~v~~ 301 (382)
+..+++.+++.
T Consensus 213 ~i~~~g~~~~l~~ 225 (275)
T cd03289 213 KVRQYDSIQKLLN 225 (275)
T ss_pred eEeecCCHHHHhh
Confidence 55566666653
No 214
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-41 Score=317.36 Aligned_cols=205 Identities=15% Similarity=0.091 Sum_probs=162.8
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~ 138 (382)
++++++|++++|+.. + +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~--~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGNY--E----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECCe--e----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 368899999999642 2 5999999999999999999999999999999999985 499999999865321
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCccccccc---cccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKN---DAEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~---~~~~~~~~~ 213 (382)
. .....+++ .++|++|++.+|+ .|+.+|+.+......... ...+.+.++++.+++.. ...++.+.+
T Consensus 77 ~-------~~~~~~~~-~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 147 (251)
T PRK14251 77 K-------MDLVELRK-EVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQA 147 (251)
T ss_pred c-------chHHHhhc-cEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhh
Confidence 0 11122343 7999999998887 799999965421111111 11234556777778741 122488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|||+||||++. +.++||+++++++
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~--~~~~~d~i~~l~~ 221 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK----HQYTFIMVTHNLQQ--AGRISDQTAFLMN 221 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH----cCCeEEEEECCHHH--HHhhcCEEEEEEC
Confidence 99999999999999999999999999 999999999999999972 36899999996555 8889999999976
No 215
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-41 Score=386.00 Aligned_cols=251 Identities=15% Similarity=0.146 Sum_probs=203.3
Q ss_pred eeccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------c----CcCchhHHHHHhhhcccCCeeeecCCccc
Q 016817 22 WWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------I----APDGLNELRHKFLSYRSGDFWIPIGGIQK 90 (382)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~i~i~nvs~~y~~~~~~v~~~vL~~ 90 (382)
...+..++..+......++....+.+|+.++.+.+++.. + +..+.|+++||+++|.++..+ +|+|
T Consensus 1182 ~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~----VL~~ 1257 (1622)
T PLN03130 1182 ALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPP----VLHG 1257 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCc----eecc
Confidence 344556677777777778888999999999887664310 0 123579999999999754333 5999
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCCh
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~ 169 (382)
+||+|++||.+||||+||||||||+++|.|+++ ++|+|.+||.|+.+.+. ..+|+ +|++|+||+.+|+
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l---------~~LR~-~IsiVpQdp~LF~- 1326 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL---------MDLRK-VLGIIPQAPVLFS- 1326 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCH---------HHHHh-ccEEECCCCcccc-
Confidence 999999999999999999999999999999999 89999999998865432 23665 8999999999998
Q ss_pred hhhhhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHH
Q 016817 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKAL 238 (382)
Q Consensus 170 ~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLD 238 (382)
.|+++|+... ....++++.++++.+++.+++. +.| ..||||||||++|||||+++|+|||||
T Consensus 1327 GTIreNLd~~------~~~tdeei~~Al~~a~l~~~I~-~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130 1327 GTVRFNLDPF------NEHNDADLWESLERAHLKDVIR-RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred ccHHHHhCcC------CCCCHHHHHHHHHHcCcHHHHH-hCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 7999999532 1234567788888888776544 333 369999999999999999999999999
Q ss_pred h---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 239 K---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 239 E---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
| +||+++...|++.|++.. +++|+|+|+| +++++.. ||+|++|++ +..|++++++.
T Consensus 1400 EATSaLD~~Te~~Iq~~I~~~~----~~~TvI~IAH--RL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1400 EATAAVDVRTDALIQKTIREEF----KSCTMLIIAH--RLNTIID-CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHC----CCCEEEEEeC--ChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 9 999999999999999873 5899999999 7776876 688888876 56677766664
No 216
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-41 Score=320.05 Aligned_cols=220 Identities=15% Similarity=0.091 Sum_probs=170.9
Q ss_pred hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEee
Q 016817 60 LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQT 133 (382)
Q Consensus 60 ~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~ 133 (382)
++....+|+++|++++|+.. + +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+
T Consensus 14 ~~~~~~~l~~~nl~~~~~~~--~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYGKK--E----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI 87 (267)
T ss_pred cCCCCeEEEEeeEEEEECCe--e----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCE
Confidence 34456689999999999542 2 6999999999999999999999999999999999984 5999999998
Q ss_pred cCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCccccccc---cccc
Q 016817 134 SSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKN---DAEI 208 (382)
Q Consensus 134 ~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~---~~~~ 208 (382)
++.... .....+++ .++|+||++.+|+ .|+.+|+.......+... ...+++.++++.+++.+ ...+
T Consensus 88 ~~~~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 88 DINRKE-------INVYEMRK-HIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred Eccccc-------CChHHHhc-ceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 763211 01112343 7999999998888 699999976432111100 11234556677777742 1234
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||+||++|||||+.+|++||||| +||+.++..+.++|+++ . ++.|||+||||++. +..+||++
T Consensus 159 ~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiii~tH~~~~--~~~~~d~i 232 (267)
T PRK14237 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL---K-KNYTIIIVTHNMQQ--AARASDYT 232 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---h-cCCEEEEEecCHHH--HHHhcCEE
Confidence 8899999999999999999999999999999 99999999999999998 3 36899999996655 88899999
Q ss_pred hhhhh---ccccccccee
Q 016817 286 KICEY---LGVSEISGVY 300 (382)
Q Consensus 286 ~ll~~---~~~~~~~~v~ 300 (382)
+++++ +..+++++++
T Consensus 233 ~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 233 AFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 99986 3444444444
No 217
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.6e-40 Score=312.22 Aligned_cols=188 Identities=13% Similarity=0.094 Sum_probs=153.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceee-EeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV-YDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~-Q~~ 164 (382)
+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.... ..+++ .++|++ |++
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~----------~~~~~-~i~~~~~~~~ 104 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR----------KKFLR-RIGVVFGQKT 104 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc----------hhhcc-cEEEEcCCcc
Confidence 6999999999999999999999999999999999998 8999999998542110 11333 799998 556
Q ss_pred CCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 165 RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
.+++.+|+.+|+.......... ....+.+.++++.+++.+..+ +++.+||||||||++|||||+.+|++||||| +
T Consensus 105 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 105 QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD-TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 7888899999987543211111 111234566788889986554 8899999999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.++..+.+.|+++. ++.+.|||+||||++. +..+||+++++++
T Consensus 184 LD~~~~~~l~~~l~~~~--~~~~~tiiivsH~~~~--~~~~~d~i~~l~~ 229 (236)
T cd03267 184 LDVVAQENIRNFLKEYN--RERGTTVLLTSHYMKD--IEALARRVLVIDK 229 (236)
T ss_pred CCHHHHHHHHHHHHHHH--hcCCCEEEEEecCHHH--HHHhCCEEEEEeC
Confidence 99999999999999983 3458999999996655 8889999988865
No 218
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=7e-41 Score=316.99 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=159.8
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
+++||++. . +|+|+||+|++|++++|+||||||||||+++|+|+++++|+|.++|+++.... .
T Consensus 2 ~~~~l~~~----~------~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~------~- 64 (248)
T PRK03695 2 QLNDVAVS----T------RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWS------A- 64 (248)
T ss_pred cccccchh----c------eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCC------H-
Confidence 56778775 1 49999999999999999999999999999999999878899999998764221 1
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV 227 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra 227 (382)
...++ .++|+||++.+++.+|+.+|+..............+++.++++.+++.+... +++.+||||||||++||||
T Consensus 65 --~~~~~-~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~a 140 (248)
T PRK03695 65 --AELAR-HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-RSVNQLSGGEWQRVRLAAV 140 (248)
T ss_pred --HHHhh-heEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHH
Confidence 11233 6899999988777899999997542110001111235677888999986554 8999999999999999999
Q ss_pred ehh-------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 228 VSN-------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 228 L~~-------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+. +|++||||| +||+.++..+.++|+++ .++|.|||++|||++. +.++||+++++++
T Consensus 141 l~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~---~~~~~tvi~~sH~~~~--~~~~~d~i~~l~~ 208 (248)
T PRK03695 141 VLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL---CQQGIAVVMSSHDLNH--TLRHADRVWLLKQ 208 (248)
T ss_pred HhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 997 679999999 99999999999999998 3358999999996555 8889999999976
No 219
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=318.58 Aligned_cols=205 Identities=16% Similarity=0.104 Sum_probs=161.2
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
.++|+++||+++|+.. + +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 8 ~~~l~i~~v~~~~~~~--~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 8 ETVLRTENLNVYYGSF--L----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred ceEEEEeeeEEEECCE--E----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 3479999999999642 2 5999999999999999999999999999999999974 48999999986532
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccc---cccccccCCC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN---DAEIDDLKSS 214 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~~L 214 (382)
.. .....+++ .++|++|++.+|+ .|+.+|+.+............+++.++++.+++.+ ...++.+.+|
T Consensus 82 ~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 152 (264)
T PRK14243 82 PD-------VDPVEVRR-RIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSL 152 (264)
T ss_pred cc-------cChHHHhh-hEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccC
Confidence 10 01112344 7999999998888 59999996543211111111233445566666632 1234789999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||++|||++. +..+||++++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~-~~tvi~vtH~~~~--~~~~~d~v~~l~ 224 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK---E-QYTIIIVTHNMQQ--AARVSDMTAFFN 224 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---c-CCEEEEEecCHHH--HHHhCCEEEEEe
Confidence 9999999999999999999999999 999999999999999983 2 5899999996555 999999999997
No 220
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=315.39 Aligned_cols=215 Identities=15% Similarity=0.109 Sum_probs=165.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
..+++++|++++|+. .. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~--~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFYGK--FE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEECC--ee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 457899999999964 22 5999999999999999999999999999999999864 28999999986642
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc--ccccccccCcccccc----cccccccc
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH--HNQRCLRSDDCALMK----NDAEIDDL 211 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~--~~~~~~~~l~~~~L~----~~~~~~~~ 211 (382)
.. .....+++ .++|++|++.+|+ .|+.+|+.+.......... .++.+.++++.+++. +.. ++.+
T Consensus 77 ~~-------~~~~~~~~-~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~ 146 (252)
T PRK14255 77 PN-------EDVVQLRK-QVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHL-HESA 146 (252)
T ss_pred cc-------ccHHHhcC-eEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHH-hcCc
Confidence 11 11112343 7999999998888 7999999754211110111 112334455666553 233 4889
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||+||||++. +.++||+++++
T Consensus 147 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tii~vsH~~~~--~~~~~d~i~~l 220 (252)
T PRK14255 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR---D-QYTIILVTHSMHQ--ASRISDKTAFF 220 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH---h-CCEEEEEECCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 999999999999999983 2 5899999996655 88899999999
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..+++.+++
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 221 LTGNLIEFADTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHh
Confidence 87 3444554555
No 221
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=7.2e-41 Score=351.70 Aligned_cols=241 Identities=16% Similarity=0.109 Sum_probs=191.5
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhh-hh-------c-CcCchhHHHHHhhhcccCC-eeeecCCcccCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL-AL-------I-APDGLNELRHKFLSYRSGD-FWIPIGGIQKGG 92 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~-~~~~~i~i~nvs~~y~~~~-~~v~~~vL~~is 92 (382)
.++..|+..+......+..+..+.+|+.++++.++. +. . +..+.|+++||+++|+.+. .+ +|+|+|
T Consensus 285 ~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~----iL~~in 360 (576)
T TIGR02204 285 VMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQP----ALDGLN 360 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCc----ccccee
Confidence 356789999999999999999999999999876542 10 0 1123589999999997532 22 599999
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|++++||.++|+||||||||||+++|+|+++ .+|+|.+||.++.+.. ...+|+ .++|++|++.+|+ .|
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~---------~~~~~~-~i~~~~Q~~~lf~-~T 429 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD---------PAELRA-RMALVPQDPVLFA-AS 429 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC---------HHHHHH-hceEEccCCcccc-cc
Confidence 9999999999999999999999999999999 8999999999765332 122554 8999999999998 79
Q ss_pred hhhhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh--
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-- 239 (382)
++||+... .+...++++.++++.+++.+.+. ......||||||||++||||++.+|++|||||
T Consensus 430 i~~Ni~~~-----~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpt 504 (576)
T TIGR02204 430 VMENIRYG-----RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504 (576)
T ss_pred HHHHHhcC-----CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcc
Confidence 99999532 22223456666777766653322 02234599999999999999999999999999
Q ss_pred -cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||+.+++.+++.|+++. .++|+|+|||++.. . ..+|+++.+++
T Consensus 505 s~lD~~~~~~i~~~l~~~~----~~~t~IiitH~~~~--~-~~~d~vi~l~~ 549 (576)
T TIGR02204 505 SALDAESEQLVQQALETLM----KGRTTLIIAHRLAT--V-LKADRIVVMDQ 549 (576)
T ss_pred cccCHHHHHHHHHHHHHHh----CCCEEEEEecchHH--H-HhCCEEEEEEC
Confidence 999999999999999872 47999999995543 5 46888888866
No 222
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=315.68 Aligned_cols=204 Identities=14% Similarity=0.089 Sum_probs=162.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~ 139 (382)
+|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~------~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYGEKK------AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeCCce------eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 688999999996432 5999999999999999999999999999999999985 5899999998653210
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---ccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~~~L 214 (382)
.....+++ .++|+||++.+|+ .|+.+|+.+......... ..++.+.++++.+++.+. ..++++.+|
T Consensus 77 -------~~~~~~~~-~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14262 77 -------LDVTEYRK-KVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRL 147 (250)
T ss_pred -------hhHHHhhh-hEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhc
Confidence 11112343 7999999998888 899999975432111111 112335566777777532 234889999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||++|||||+.+|++||||| +||+.++..+.+.|+++ . +++|||++|||++. +..+||+++++++
T Consensus 148 S~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tili~sH~~~~--~~~~~d~i~~l~~ 220 (250)
T PRK14262 148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL---S-ENYTIVIVTHNIGQ--AIRIADYIAFMYR 220 (250)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH---h-cCcEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999999999 99999999999999998 3 36899999996554 8889999999976
No 223
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=315.16 Aligned_cols=214 Identities=15% Similarity=0.121 Sum_probs=164.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~~ 139 (382)
+++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ + +|+|.++|.++....
T Consensus 4 ~l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGDK--Q----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECCE--E----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 67889999999632 2 5999999999999999999999999999999999986 3 799999998764211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc--ccccccccCcccccc----ccccccccCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH--HNQRCLRSDDCALMK----NDAEIDDLKS 213 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~--~~~~~~~~l~~~~L~----~~~~~~~~~~ 213 (382)
. ....+|. .++|++|++.+|+..|+.+|+............ ..+.+.++++.+++. +.. ++++.+
T Consensus 78 ~-------~~~~~~~-~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 148 (252)
T PRK14272 78 V-------DPVAMRR-RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL-KTPATG 148 (252)
T ss_pred c-------CHHHhhc-eeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhh-cCCccc
Confidence 0 0112343 799999999999889999999654311110000 112233344445442 233 488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||++|||||+.+|++||||| +||+.++..+.+.|+++ + +++|||++|||++. +..+||++++|++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~sH~~~~--~~~~~d~i~~l~~ 222 (252)
T PRK14272 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL---K-KVTTIIIVTHNMHQ--AARVSDTTSFFLV 222 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999 99999999999999997 3 36899999996655 8889999999976
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..+++++++
T Consensus 223 G~i~~~~~~~~~~ 235 (252)
T PRK14272 223 GDLVEHGPTDQLF 235 (252)
T ss_pred CEEEEeCCHHHHH
Confidence 3344444443
No 224
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=5.5e-41 Score=318.48 Aligned_cols=199 Identities=15% Similarity=0.100 Sum_probs=163.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~~------vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~---------- 66 (251)
T PRK09544 3 SLVSLENVSVSFGQRR------VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK---------- 66 (251)
T ss_pred cEEEEeceEEEECCce------EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc----------
Confidence 4788999999996432 5999999999999999999999999999999999998 8999998763
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChh--hhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYN--RVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~--tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..++|+||++.+++.+ ++.+++... .+ ...+++.++++.+++.+... +++.+||||||||
T Consensus 67 -----------~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~~-~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qr 128 (251)
T PRK09544 67 -----------LRIGYVPQKLYLDTTLPLTVNRFLRLR-----PG-TKKEDILPALKRVQAGHLID-APMQKLSGGETQR 128 (251)
T ss_pred -----------cCEEEeccccccccccChhHHHHHhcc-----cc-ccHHHHHHHHHHcCChHHHh-CChhhCCHHHHHH
Confidence 2699999998777653 555554211 11 12345667888999986654 8999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--cccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--LGVSEI 296 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--~~~~~~ 296 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++|||++. +..+||+++++++ +..+++
T Consensus 129 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~g~tiiivsH~~~~--i~~~~d~i~~l~~~i~~~g~~ 204 (251)
T PRK09544 129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLR--RELDCAVLMVSHDLHL--VMAKTDEVLCLNHHICCSGTP 204 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEECCceEeeCCH
Confidence 999999999999999999 999999999999999973 3348999999996555 8889999999976 344444
Q ss_pred cceee
Q 016817 297 SGVYD 301 (382)
Q Consensus 297 ~~v~~ 301 (382)
+++++
T Consensus 205 ~~~~~ 209 (251)
T PRK09544 205 EVVSL 209 (251)
T ss_pred HHHhC
Confidence 44543
No 225
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=315.88 Aligned_cols=216 Identities=16% Similarity=0.141 Sum_probs=166.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~ 137 (382)
.++++++|++++|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ + +|+|+++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~------il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQ------VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred CceEEEEEEEEEECCee------EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccc
Confidence 34788999999996432 5999999999999999999999999999999999998 5 5999999986532
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc--ccccccccCccccccc---cccccccC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH--HNQRCLRSDDCALMKN---DAEIDDLK 212 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~--~~~~~~~~l~~~~L~~---~~~~~~~~ 212 (382)
.. .....+|+ .++|+||++.+|+ .|+.+|+.+.......... ..+.+.++++.+++.+ ...++++.
T Consensus 76 ~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 146 (251)
T PRK14249 76 PN-------LDVVNLRK-RVGMVFQQPNPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL 146 (251)
T ss_pred cc-------cChHHhhc-eEEEEecCCccCc-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcc
Confidence 11 01112343 8999999999888 5999999754321111111 1123444566666542 12348899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ . ++.|||+||||++. +..+||++++++
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~~~tilivsh~~~~--~~~~~d~i~~l~ 220 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL---K-QNYTIAIVTHNMQQ--AARASDWTGFLL 220 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHhhCCEEEEEe
Confidence 999999999999999999999999999 99999999999999987 3 47899999996555 889999999997
Q ss_pred h---ccccccccee
Q 016817 290 Y---LGVSEISGVY 300 (382)
Q Consensus 290 ~---~~~~~~~~v~ 300 (382)
+ ...+++.+++
T Consensus 221 ~G~i~~~~~~~~~~ 234 (251)
T PRK14249 221 TGDLVEYGRTGEIF 234 (251)
T ss_pred CCeEEEeCCHHHHH
Confidence 6 3334444444
No 226
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=319.95 Aligned_cols=206 Identities=16% Similarity=0.124 Sum_probs=162.9
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
++.++|+++|++++|+.. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++
T Consensus 16 ~~~~~l~~~nl~~~~~~~--~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGF--L----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred CCCceEEEeeEEEEeCCe--E----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 456699999999999642 2 5999999999999999999999999999999999975 289999999876
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccc----cccccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMK----NDAEIDDL 211 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~ 211 (382)
.... .....+|+ .++|+||++.+|+ .|+.+|+.............++.+.++++.+++. +.. ++++
T Consensus 90 ~~~~-------~~~~~~~~-~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~ 159 (274)
T PRK14265 90 YDSQ-------INSVKLRR-QVGMVFQRPNPFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKL-KEKG 159 (274)
T ss_pred cccc-------chhHHHhh-cEEEEccCCcccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHh-cCCc
Confidence 4211 01112343 8999999998887 5999999754321100001123344556666653 233 4889
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ . ++.|||++|||++. +.++||++++|
T Consensus 160 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~---~-~~~tiii~sH~~~~--~~~~~d~i~~l 233 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL---K-EQYTIIMVTHNMQQ--ASRVADWTAFF 233 (274)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3 36899999996655 88999999999
Q ss_pred h
Q 016817 289 E 289 (382)
Q Consensus 289 ~ 289 (382)
+
T Consensus 234 ~ 234 (274)
T PRK14265 234 N 234 (274)
T ss_pred e
Confidence 6
No 227
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=319.34 Aligned_cols=216 Identities=14% Similarity=0.148 Sum_probs=166.2
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++++++|++++|+... +|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 21 ~~~~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDH------ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred CceEEEEeeeEEEECCcc------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 456899999999996433 6999999999999999999999999999999999985 6899999998763
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcc--ccccccccCcccc----ccccccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVH--HNQRCLRSDDCAL----MKNDAEIDD 210 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~--~~~~~~~~l~~~~----L~~~~~~~~ 210 (382)
... .....+++ .++|+||++.+|+ .|+.+|+.+.......... ..+.+.++++.++ +.+.+ +++
T Consensus 95 ~~~-------~~~~~~~~-~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~ 164 (271)
T PRK14238 95 DKS-------YSVEELRT-NVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDN 164 (271)
T ss_pred ccc-------ccHHHHhh-hEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcC
Confidence 211 01112343 8999999998887 5999999754321110000 1122344455443 33333 488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ .+ +.|||++|||++. +..+||++++
T Consensus 165 ~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-~~tiiivsH~~~~--i~~~~d~i~~ 238 (271)
T PRK14238 165 AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL---KK-DYSIIIVTHNMQQ--AARISDKTAF 238 (271)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH---Hc-CCEEEEEEcCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 99999999999999998 33 6899999996555 8889999999
Q ss_pred hhh---ccccccccee
Q 016817 288 CEY---LGVSEISGVY 300 (382)
Q Consensus 288 l~~---~~~~~~~~v~ 300 (382)
+++ +..+++++++
T Consensus 239 l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 239 FLNGYVNEYDDTDKIF 254 (271)
T ss_pred EECCEEEEeCCHHHHH
Confidence 986 3334444443
No 228
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.7e-40 Score=317.80 Aligned_cols=220 Identities=17% Similarity=0.118 Sum_probs=170.9
Q ss_pred hhHHHHHhhhcccC-------CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCC
Q 016817 66 LNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN 137 (382)
Q Consensus 66 ~i~i~nvs~~y~~~-------~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~ 137 (382)
+|+++||+++|+.+ .+. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~ 78 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQT----VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK 78 (268)
T ss_pred eEEEeceEEEecCCccccccCcee----eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence 68899999999731 222 5999999999999999999999999999999999998 89999999986542
Q ss_pred cccceeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhc--CccccccccccCccccccccccccccCC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSE--GVHHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
.. ......+++ .++|+||++ .+++..++.+|+......+.. .....+.+.++++.+++.....++++.+
T Consensus 79 ~~------~~~~~~~~~-~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 151 (268)
T PRK10419 79 LN------RAQRKAFRR-DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQ 151 (268)
T ss_pred cC------hhHHHHHHh-cEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCcc
Confidence 21 112222444 899999997 356678899988543211111 1112235677888899963333489999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|+|++|||++. +..+||+++++++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~--~~~~~tiiivsH~~~~--i~~~~d~i~~l~~ 227 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQ--QQFGTACLFITHDLRL--VERFCQRVMVMDN 227 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH--HHcCcEEEEEECCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999 999999999999999983 3348999999996655 8889999999976
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..+++.+++
T Consensus 228 G~i~~~g~~~~~~ 240 (268)
T PRK10419 228 GQIVETQPVGDKL 240 (268)
T ss_pred CEEeeeCChhhcc
Confidence 3344444433
No 229
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.8e-41 Score=314.82 Aligned_cols=201 Identities=14% Similarity=0.105 Sum_probs=165.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.. . +|+|+||++.+||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 i~i~~l~~~~~~~--~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~------ 68 (237)
T TIGR00968 1 IEIANISKRFGSF--Q----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH------ 68 (237)
T ss_pred CEEEEEEEEECCe--e----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC------
Confidence 3578999999643 2 5999999999999999999999999999999999999 8999999998764221
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+ +.++|++|++.+|+..|+.+|+.+....... .....+.+.++++.+++.+..+ +.+.+|||||+||++|
T Consensus 69 -----~~~-~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~l 141 (237)
T TIGR00968 69 -----ARD-RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-RYPNQLSGGQRQRVAL 141 (237)
T ss_pred -----hhh-cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHH
Confidence 022 3799999999999888999999654321110 1111244567888899976554 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|+++|||| +||+.++..+.+.|.++. .+.|+|||++||++.. +.++||+++++++
T Consensus 142 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--~~~~~tvli~sH~~~~--~~~~~d~i~~l~~ 206 (237)
T TIGR00968 142 ARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLH--DEVHVTTVFVTHDQEE--AMEVADRIVVMSN 206 (237)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHhhcCEEEEEEC
Confidence 999999999999999 999999999999999973 3348999999995554 8889999999976
No 230
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-40 Score=306.05 Aligned_cols=194 Identities=15% Similarity=0.069 Sum_probs=159.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|+++.|+... +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~------~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------- 68 (207)
T PRK13539 2 MLEGEDLACVRGGRV------LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD------- 68 (207)
T ss_pred EEEEEeEEEEECCeE------EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-------
Confidence 578899999996432 5999999999999999999999999999999999998 89999999985421
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.. .+. .++|++|++.+++..|+.+|+.+..... + ...+.+.++++.+|+.+.. ++++.+||||||||++|
T Consensus 69 --~~---~~~-~~~~~~~~~~~~~~~tv~~~l~~~~~~~--~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~l 138 (207)
T PRK13539 69 --PD---VAE-ACHYLGHRNAMKPALTVAENLEFWAAFL--G-GEELDIAAALEAVGLAPLA-HLPFGYLSAGQKRRVAL 138 (207)
T ss_pred --hh---hHh-hcEEecCCCcCCCCCcHHHHHHHHHHhc--C-CcHHHHHHHHHHcCCHHHH-cCChhhcCHHHHHHHHH
Confidence 01 333 7999999888888899999996543211 1 1223467789999998654 48999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||++|||++. +.. ++++.+.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tiii~sH~~~~--~~~--~~~~~~~ 199 (207)
T PRK13539 139 ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH---LAQGGIVIAATHIPLG--LPG--ARELDLG 199 (207)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCchh--hcc--CcEEeec
Confidence 999999999999999 99999999999999987 3358999999996655 664 5555543
No 231
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=313.05 Aligned_cols=200 Identities=13% Similarity=0.065 Sum_probs=165.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|+. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.....
T Consensus 1 l~~~~l~~~~~~-~------~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~----- 68 (235)
T cd03299 1 LKVENLSKDWKE-F------KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP----- 68 (235)
T ss_pred CeeEeEEEEeCC-c------eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-----
Confidence 457889999963 2 4999999999999999999999999999999999999 89999999987642210
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.++|++|++.+|+..|+.+|+.+........ ....+.+.++++.+++.+.+. +++.+|||||+|||+|
T Consensus 69 ------~~-~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~l 140 (235)
T cd03299 69 ------EK-RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-RKPETLSGGEQQRVAI 140 (235)
T ss_pred ------hH-cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-cCcccCCHHHHHHHHH
Confidence 12 38999999999998899999996542211100 112234567888999986655 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++|+||| +||+.++..+.+.|+++. .+.|.|+|++||++.. +..+||+++++++
T Consensus 141 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~~~tili~tH~~~~--~~~~~d~i~~l~~ 205 (235)
T cd03299 141 ARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR--KEFGVTVLHVTHDFEE--AWALADKVAIMLN 205 (235)
T ss_pred HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 999999999999999983 3348999999996555 8888999998876
No 232
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.5e-40 Score=285.12 Aligned_cols=203 Identities=17% Similarity=0.149 Sum_probs=170.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.++++++.+.- ++.+ +|+++||++.+||+++|+||||||||||+|+++-|+. ++|+++|.|+++.....
T Consensus 3 lle~kq~~y~a--~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~p---- 72 (223)
T COG4619 3 LLELKQVGYLA--GDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKP---- 72 (223)
T ss_pred chHHHHHHhhc--CCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccCh----
Confidence 35666665544 3333 5999999999999999999999999999999999999 99999999998765432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+|. +|+|+.|.|.||+ .||++|+.+.. .......+...+...++++++.+...++.+..|||||+||++|
T Consensus 73 -----ea~Rq-~VsY~~Q~paLfg-~tVeDNlifP~-~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAl 144 (223)
T COG4619 73 -----EAYRQ-QVSYCAQTPALFG-DTVEDNLIFPW-QIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIAL 144 (223)
T ss_pred -----HHHHH-HHHHHHcCccccc-cchhhccccch-HHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHH
Confidence 23665 8999999999999 79999997643 2223344556677889999998877779999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|-|.--|+|||||| +||+.+.+.|-++|.++. ++++..++.||||.+. +.+.+++++-+..
T Consensus 145 iR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v--~~q~vAv~WiTHd~dq--a~rha~k~itl~~ 209 (223)
T COG4619 145 IRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV--REQNVAVLWITHDKDQ--AIRHADKVITLQP 209 (223)
T ss_pred HHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHh--hhhceEEEEEecChHH--HhhhhheEEEecc
Confidence 999999999999999 999999999999999984 6788999999997666 7777877776543
No 233
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=316.39 Aligned_cols=204 Identities=16% Similarity=0.114 Sum_probs=162.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~ 138 (382)
++++++|++++|++. . +|+|+||+|++||+++|+|+||||||||+++|+|+++ + +|+|.++|+++...
T Consensus 6 ~~l~~~~l~~~~~~~--~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYNTS--K----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEECCe--E----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 478899999999642 2 5999999999999999999999999999999999987 2 79999999866321
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-C-ccccccccccCccccccc---cccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-G-VHHNQRCLRSDDCALMKN---DAEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~-~~~~~~~~~~l~~~~L~~---~~~~~~~~~ 213 (382)
. .....++. .++|+||++.+|+ .|+.+|+......... . ....+.+.++++.+++.+ ...++++.+
T Consensus 80 ~-------~~~~~~~~-~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 150 (259)
T PRK14260 80 R-------ININRLRR-QIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALG 150 (259)
T ss_pred c-------cchHhhhh-heEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCccc
Confidence 0 01112343 7999999999998 8999999654321110 1 111234556777777732 123488999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . +++|||++|||++. +..+||++++|+
T Consensus 151 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiii~tH~~~~--i~~~~d~i~~l~ 223 (259)
T PRK14260 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL---R-SELTIAIVTHNMQQ--ATRVSDFTAFFS 223 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH--HHHhcCeEEEEe
Confidence 99999999999999999999999999 99999999999999998 2 35899999996555 999999999986
No 234
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.4e-40 Score=344.83 Aligned_cols=213 Identities=18% Similarity=0.108 Sum_probs=169.3
Q ss_pred CchhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 64 DGLNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
.++++++|++++|+.+ ... +|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~----~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 78 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRT----VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL 78 (529)
T ss_pred CceEEEeceEEEecCCCCcee----eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec
Confidence 3579999999999642 122 5999999999999999999999999999999999997 389999999976
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhh-hcC-ccccccccccCcccccccc--cccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWM-SEG-VHHNQRCLRSDDCALMKND--AEID 209 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~-~~~-~~~~~~~~~~l~~~~L~~~--~~~~ 209 (382)
.... .......|++.+||+||++. +++..++.+|+....... +.. ....+++.++++.+|+.+. ..++
T Consensus 79 ~~~~------~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (529)
T PRK15134 79 LHAS------EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTD 152 (529)
T ss_pred ccCC------HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhh
Confidence 4221 11222234347999999974 567788999886432111 111 1123456788999999752 2348
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
++.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+||+|+
T Consensus 153 ~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tvi~vtHd~~~--~~~~~dri~ 228 (529)
T PRK15134 153 YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQ--QELNMGLLFITHNLSI--VRKLADRVA 228 (529)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHH--HhcCCeEEEEcCcHHH--HHHhcCEEE
Confidence 999999999999999999999999999999 999999999999999983 3358999999996666 888999999
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
+|++
T Consensus 229 ~l~~ 232 (529)
T PRK15134 229 VMQN 232 (529)
T ss_pred EEEC
Confidence 9986
No 235
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=343.67 Aligned_cols=205 Identities=14% Similarity=0.035 Sum_probs=169.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....
T Consensus 3 ~~l~~~~l~~~~~~~--~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~---- 72 (501)
T PRK11288 3 PYLSFDGIGKTFPGV--K----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAS---- 72 (501)
T ss_pred ceEEEeeeEEEECCE--E----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC----
Confidence 478999999999642 2 5999999999999999999999999999999999998 8999999998764211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC----ccccccccccCccccccccccccccCCCcccee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
. ...+| +.+||++|++.+++.+|+.+|+.+.......+ ....+++.++++.+++.+.. ++++.+||||||
T Consensus 73 --~--~~~~~-~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~ 146 (501)
T PRK11288 73 --T--TAALA-AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-DTPLKYLSIGQR 146 (501)
T ss_pred --H--HHHHh-CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-CCchhhCCHHHH
Confidence 0 11133 37999999999999899999997642111001 11124567789999997655 489999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|||+||||++. +..+||++++|++
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~g~tiiiitHd~~~--~~~~~d~i~~l~~ 215 (501)
T PRK11288 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIREL---RAEGRVILYVSHRMEE--IFALCDAITVFKD 215 (501)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999 99999999999999998 3468999999996665 8889999999976
No 236
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.7e-40 Score=307.93 Aligned_cols=196 Identities=20% Similarity=0.226 Sum_probs=157.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++... +|+|+||+|++|++++|+||||||||||+++|+|+.+ ++|+|.++|+++....
T Consensus 3 l~~~~l~~~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~------ 72 (220)
T cd03245 3 IEFRNVSFSYPNQEIP----ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD------ 72 (220)
T ss_pred EEEEEEEEEcCCCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCC------
Confidence 6788999999643222 5999999999999999999999999999999999998 8999999998653211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~L 214 (382)
...+++ .++|++|++.+|+ .|+.+|+.+.. .....+.+.++++.+++.+.+. +.| .+|
T Consensus 73 ---~~~~~~-~i~~~~q~~~~~~-~tv~e~l~~~~-----~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~L 141 (220)
T cd03245 73 ---PADLRR-NIGYVPQDVTLFY-GTLRDNITLGA-----PLADDERILRAAELAGVTDFVN-KHPNGLDLQIGERGRGL 141 (220)
T ss_pred ---HHHHHh-hEEEeCCCCcccc-chHHHHhhcCC-----CCCCHHHHHHHHHHcCcHHHHH-hccccccceecCCCccC
Confidence 111333 7999999998887 69999985421 1112234455677777765443 444 699
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||++|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||++|||++. + ++||+++++++
T Consensus 142 SgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tii~~sH~~~~--~-~~~d~v~~l~~ 213 (220)
T cd03245 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL---G-DKTLIIITHRPSL--L-DLVDRIIVMDS 213 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---C-CCEEEEEeCCHHH--H-HhCCEEEEEeC
Confidence 9999999999999999999999999 999999999999999983 2 3899999997664 6 58899988875
No 237
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=313.33 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=160.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~~ 139 (382)
+++++|+++.|+... +|+++||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~- 75 (249)
T PRK14253 3 KFNIENLDLFYGENQ------ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN- 75 (249)
T ss_pred eEEEeccEEEECCee------eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccc-
Confidence 578999999996422 5999999999999999999999999999999999987 3 89999999865311
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---ccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~~~L 214 (382)
.....+|+ .++|+||++.+|+ .|+.+|+.+......... ...+++.++++.+++.+. ..++++.+|
T Consensus 76 -------~~~~~~~~-~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 146 (249)
T PRK14253 76 -------IDVADLRI-KVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGL 146 (249)
T ss_pred -------cchHHHHh-heeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccC
Confidence 01112343 7999999999887 899999975432111000 111234456666776421 224788999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||+||||++. +..+||+++++++
T Consensus 147 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~-~~tii~~sh~~~~--~~~~~d~i~~l~~ 219 (249)
T PRK14253 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK---K-NYTIVIVTHSMQQ--ARRISDRTAFFLM 219 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---c-CCeEEEEecCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999999999 999999999999999983 2 5899999996555 8999999999986
No 238
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-40 Score=309.46 Aligned_cols=187 Identities=16% Similarity=0.138 Sum_probs=158.6
Q ss_pred chhHHHHHhhhcccCCe-----eeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDF-----WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~-----~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~ 138 (382)
.+++++|+++.|..+.. .+ .+++||||+|++||++||||+||||||||-|+|.||++ ++|+|+|+|+++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v--~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~- 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYV--KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK- 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccce--EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh-
Confidence 46889999999975421 12 37999999999999999999999999999999999999 89999999986431
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
+. . ....+++.++|+.+|+.+...+++|++|||||
T Consensus 80 ------------------~~--------------~-------------~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 80 ------------------LS--------------K-------------EERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred ------------------cc--------------h-------------hHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 11 0 01124566788889987655569999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
+|||+|||||+.+|+++++|| +||...+.+++++|+++ +++.|.|.++||||+.. +..+||++.+|.. +.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl--q~~~~lt~lFIsHDL~v--v~~isdri~VMy~G~iVE 190 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL--QEELGLTYLFISHDLSV--VRYISDRIAVMYLGKIVE 190 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH--HHHhCCeEEEEEEEHHh--hhhhcccEEEEecCceeE
Confidence 999999999999999999999 99999999999999999 46779999999997777 9999999999986 67
Q ss_pred cccccceeeEE
Q 016817 293 VSEISGVYDIV 303 (382)
Q Consensus 293 ~~~~~~v~~~~ 303 (382)
.++.+++|..|
T Consensus 191 ~g~~~~~~~~p 201 (268)
T COG4608 191 IGPTEEVFSNP 201 (268)
T ss_pred ecCHHHHhhCC
Confidence 77778888543
No 239
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.7e-40 Score=302.35 Aligned_cols=184 Identities=15% Similarity=0.048 Sum_probs=153.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|+++.|++. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 68 (198)
T TIGR01189 1 LAARNLACSRGER--M----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR------ 68 (198)
T ss_pred CEEEEEEEEECCE--E----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch------
Confidence 3578899999643 2 5999999999999999999999999999999999998 8999999998654211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..++ +.++|++|++.+++..|+.+|+....... . ...+.+.++++.+++.+..+ +++.+|||||||||+||
T Consensus 69 ----~~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~-~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la 139 (198)
T TIGR01189 69 ----DEPH-RNILYLGHLPGLKPELSALENLHFWAAIH--G-GAQRTIEDALAAVGLTGFED-LPAAQLSAGQQRRLALA 139 (198)
T ss_pred ----HHhh-hheEEeccCcccccCCcHHHHHHHHHHHc--C-CcHHHHHHHHHHcCCHHHhc-CChhhcCHHHHHHHHHH
Confidence 1133 37999999988888899999997543211 1 11234677888999986654 89999999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
|||+.+|++||||| +||+.++..+.+.|+++ .+.|.|+|++||+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 140 RLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH---LARGGIVLLTTHQDL 188 (198)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEEEcccc
Confidence 99999999999999 99999999999999997 345899999999653
No 240
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.2e-40 Score=342.87 Aligned_cols=205 Identities=12% Similarity=0.062 Sum_probs=166.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++|++++|++. . +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 1 ~l~i~~l~~~~~~~--~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~--- 71 (500)
T TIGR02633 1 LLEMKGIVKTFGGV--K----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN--- 71 (500)
T ss_pred CEEEEeEEEEeCCe--E----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC---
Confidence 36789999999542 2 5999999999999999999999999999999999987 3899999998764321
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC--c---cccccccccCccccccccccccccCCCccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG--V---HHNQRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~--~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
... ..+ +.+||+||++.+++.+|+.+|+.+........ . ...+++.++++.+++.+...++++.+||||
T Consensus 72 ---~~~--~~~-~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 145 (500)
T TIGR02633 72 ---IRD--TER-AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGG 145 (500)
T ss_pred ---HHH--HHh-CCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHH
Confidence 111 122 37999999998999899999996542111000 0 112356678899999765444789999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||||+.+|++||||| +||+.++..+.+.|+++ +++|.|||+||||++. +..+||++++|++
T Consensus 146 ~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tviiitHd~~~--~~~~~d~i~~l~~ 216 (500)
T TIGR02633 146 QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL---KAHGVACVYISHKLNE--VKAVCDTICVIRD 216 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCcHHH--HHHhCCEEEEEeC
Confidence 9999999999999999999999 99999999999999998 3468999999996665 8899999999976
No 241
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=320.24 Aligned_cols=206 Identities=16% Similarity=0.125 Sum_probs=163.2
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++|+++|++++|+.. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 36 ~~~~l~i~~l~~~~~~~--~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 36 GETVIEARDLNVFYGDE--Q----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CCceEEEEEEEEEECCE--e----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 35689999999999643 2 5999999999999999999999999999999999984 5899999998653
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccc----cccccccC
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN----DAEIDDLK 212 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~ 212 (382)
.... ....+++ .++|+||++.+|+. |+.+|+.+............+++.++++.+++.. .+ ++++.
T Consensus 110 ~~~~-------~~~~~~~-~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 179 (285)
T PRK14254 110 DADV-------DPVALRR-RIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQL-DSSGL 179 (285)
T ss_pred cccc-------chHhhhc-cEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHH-hCCcc
Confidence 2110 0112343 89999999988884 9999997543211111112345667788888742 33 48899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh-hh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK-IC 288 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~-ll 288 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++. + +.|||++|||++. +..+||+++ ++
T Consensus 180 ~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~---~-~~tiii~tH~~~~--i~~~~dri~v~l 253 (285)
T PRK14254 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA---E-EYTVVIVTHNMQQ--AARISDKTAVFL 253 (285)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---c-CCEEEEEeCCHHH--HHhhcCEEEEEe
Confidence 999999999999999999999999999 999999999999999983 2 4799999996665 888899864 55
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 254 ~~ 255 (285)
T PRK14254 254 TG 255 (285)
T ss_pred eC
Confidence 54
No 242
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.5e-40 Score=311.96 Aligned_cols=201 Identities=17% Similarity=0.114 Sum_probs=153.7
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.+..+ +|+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~------ 70 (237)
T cd03252 1 ITFEHVRFRYKPDGPV----ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD------ 70 (237)
T ss_pred CEEEEEEEecCCCCcc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcC------
Confidence 4578999999643322 5999999999999999999999999999999999998 8999999998653211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Ccc---ccccccccCccc--cccccccccccCCCcccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVH---HNQRCLRSDDCA--LMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~---~~~~~~~~l~~~--~L~~~~~~~~~~~LSGGqk 219 (382)
...+++ .++|+||++.+|+ .|+.+|+......... ... ......+.++.+ ++...+ ++++.+||||||
T Consensus 71 ---~~~~~~-~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~LSgG~~ 144 (237)
T cd03252 71 ---PAWLRR-QVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIV-GEQGAGLSGGQR 144 (237)
T ss_pred ---HHHHhh-cEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchh-hcCCCcCCHHHH
Confidence 112343 7999999988876 7999999643210000 000 000111222223 444333 378899999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++ . +|+|||++|||++. +. .||+++++++
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~sH~~~~--~~-~~d~v~~l~~ 211 (237)
T cd03252 145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI---C-AGRTVIIIAHRLST--VK-NADRIIVMEK 211 (237)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh---c-CCCEEEEEeCCHHH--HH-hCCEEEEEEC
Confidence 99999999999999999999 99999999999999998 3 38999999997665 75 5889888876
No 243
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.5e-40 Score=380.73 Aligned_cols=250 Identities=16% Similarity=0.125 Sum_probs=203.3
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------c----CcCchhHHHHHhhhcccCCeeeecCCcccC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------I----APDGLNELRHKFLSYRSGDFWIPIGGIQKG 91 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~i~i~nvs~~y~~~~~~v~~~vL~~i 91 (382)
.++..|+..++.....++....+.+|+.++.+.+++.. + +..+.|+++||+++|+.+..+ +|+|+
T Consensus 1230 ~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~----vL~~i 1305 (1522)
T TIGR00957 1230 LQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDL----VLRHI 1305 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcc----cccce
Confidence 45678999999999999999999999999987664311 0 123579999999999765333 69999
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChh
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYN 170 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~ 170 (382)
||+|++||.+||||+||||||||+++|.|+++ ++|+|.+||.|+.+.+. ..+|+ ++++|+|||.+|+ .
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~---------~~LR~-~i~iVpQdp~LF~-g 1374 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL---------HDLRF-KITIIPQDPVLFS-G 1374 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCH---------HHHHh-cCeEECCCCcccC-c
Confidence 99999999999999999999999999999999 89999999998875542 23676 8999999999998 6
Q ss_pred hhhhhHHHHHhhhhcCccccccccccCcccccccccc------ccc----cCCCccceeeecceeeeehhHHHHHHHHh-
Q 016817 171 RVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE------IDD----LKSSPKYVLRRVDFAMVVSNIAEIYKALK- 239 (382)
Q Consensus 171 tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~------~~~----~~~LSGGqkQRvaIAraL~~~P~iLLLDE- 239 (382)
|+++|+... +...++++.++++.+++.+++. |.. ...||||||||++|||||+++|+||||||
T Consensus 1375 TIr~NLdp~------~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEa 1448 (1522)
T TIGR00957 1375 SLRMNLDPF------SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEA 1448 (1522)
T ss_pred cHHHHcCcc------cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999521 2344566778888888765443 122 23599999999999999999999999999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
+||+++...|++.|++.. +++|+|+|+| +++++.. +|+|++|++ +..|++.+.+
T Consensus 1449 TSalD~~Te~~Iq~~l~~~~----~~~TvI~IAH--Rl~ti~~-~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1449 TAAVDLETDNLIQSTIRTQF----EDCTVLTIAH--RLNTIMD-YTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEEec--CHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999863 5899999999 6666775 677777876 5556555544
No 244
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.5e-40 Score=341.48 Aligned_cols=212 Identities=12% Similarity=0.076 Sum_probs=164.8
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEe-----------
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQ----------- 132 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G----------- 132 (382)
|+++|++++|++ .. +|+|+||+|++|++++|+||||||||||+|+|+|++ + ++|+|+++|
T Consensus 1 l~~~~l~~~~~~--~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG--KE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC--eE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 467899999953 22 599999999999999999999999999999999996 5 799999973
Q ss_pred ------------ecCCCc-ccceeehhhhhhhHhhhccceeeEe-CCCCChhhhhhhHHHHHhhhhcC-ccccccccccC
Q 016817 133 ------------TSSGNS-SHTITMYMEEHNVMRSLQSGFCVYD-SRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSD 197 (382)
Q Consensus 133 ------------~~i~~~-~~~~~~~~~~~~~~r~~~ig~v~Q~-~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l 197 (382)
.++... .............+|+ .+||+||+ +.+|+.+|+.+|+.+.....+.. ....+++.+++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRK-RIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI 153 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhh-cEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111000 0000001111222343 79999997 67888899999997643211111 11234567789
Q ss_pred ccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 198 DCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 198 ~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
+.+|+.+... +++.+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++. ++.|+|||+||||++
T Consensus 154 ~~~gl~~~~~-~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tviivtHd~~ 230 (520)
T TIGR03269 154 EMVQLSHRIT-HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAV--KASGISMVLTSHWPE 230 (520)
T ss_pred HHcCChhhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHH--HhcCcEEEEEeCCHH
Confidence 9999986654 8999999999999999999999999999999 999999999999999983 445899999999766
Q ss_pred CChhhhhhhhhhhhhh
Q 016817 275 LSTEERLDARLKICEY 290 (382)
Q Consensus 275 l~~~~~~~d~v~ll~~ 290 (382)
. +..+||++++|++
T Consensus 231 ~--~~~~~d~i~~l~~ 244 (520)
T TIGR03269 231 V--IEDLSDKAIWLEN 244 (520)
T ss_pred H--HHHhcCEEEEEeC
Confidence 6 8889999999976
No 245
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=320.88 Aligned_cols=206 Identities=15% Similarity=0.100 Sum_probs=163.3
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|+++.
T Consensus 36 ~~~~l~~~~l~~~~~~~--~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF--E----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 45689999999999642 2 5999999999999999999999999999999999863 6899999998653
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccc----ccccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMK----NDAEIDD 210 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~----~~~~~~~ 210 (382)
... .....+|+ .++|++|++.+|+ .|+.+|+.+......... ..++.+.++++.+++. +.. +++
T Consensus 110 ~~~-------~~~~~~~~-~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~ 179 (286)
T PRK14275 110 GKF-------TDEVLLRK-KIGMVFQKPNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRL-DKN 179 (286)
T ss_pred hcc-------cchHHhhh-cEEEECCCCCCCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHh-hCC
Confidence 211 01112343 8999999998888 599999976432111110 1123445667777763 333 488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. .+.|||++|||++. +..+||++++
T Consensus 180 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~----~~~tvIivsH~~~~--~~~~~d~i~~ 253 (286)
T PRK14275 180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR----GSYTIMIVTHNMQQ--ASRVSDYTMF 253 (286)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 999999999999999972 25899999996555 8889999999
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 254 L~~ 256 (286)
T PRK14275 254 FYE 256 (286)
T ss_pred EEC
Confidence 976
No 246
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=315.98 Aligned_cols=207 Identities=13% Similarity=0.041 Sum_probs=164.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-----cceeeeEeecCCCc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGNS 138 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-----~G~I~i~G~~i~~~ 138 (382)
++++++|++++|+... +|+|+||++++|++++|+||||||||||+++|+|+++ + +|+|.++|+++...
T Consensus 6 ~~l~~~nl~~~~~~~~------il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK------ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeCCee------EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 4789999999996432 5999999999999999999999999999999999998 4 78999998865311
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Cc-cccccccccCcccccccc---ccccccCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GV-HHNQRCLRSDDCALMKND---AEIDDLKS 213 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~-~~~~~~~~~l~~~~L~~~---~~~~~~~~ 213 (382)
. .....+++ .++|+||++.+|+ .|+.+|+......... .. ...+.+.++++.+++.+. ..++++.+
T Consensus 80 ~-------~~~~~~~~-~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 150 (261)
T PRK14258 80 R-------VNLNRLRR-QVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALD 150 (261)
T ss_pred c-------cchHHhhc-cEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCccc
Confidence 0 01112343 7999999998888 8999999654311110 11 112345667778877431 23488899
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||+|||||+.+|++||||| +||+.++..+.+.|+++. .+.|.|||+||||+.. +.++||++++|++
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~--~~~~~tiiivsH~~~~--i~~~~d~i~~l~~ 226 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLR--LRSELTMVIVSHNLHQ--VSRLSDFTAFFKG 226 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HhCCCEEEEEECCHHH--HHHhcCEEEEEcc
Confidence 99999999999999999999999999 999999999999999973 3358999999996655 9999999999984
No 247
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=314.24 Aligned_cols=216 Identities=16% Similarity=0.142 Sum_probs=166.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
.++|+++|++++|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGEKH------ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECCee------eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 45899999999996432 6999999999999999999999999999999999974 27999999987643
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---ccccccC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEIDDLK 212 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~~~~ 212 (382)
.. ......++ .++|+||++.+|+ .|+.+|+.+......... ..++.+.++++.+++.+. ..++.+.
T Consensus 78 ~~-------~~~~~~~~-~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 148 (253)
T PRK14261 78 SG-------ADVVALRR-KIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL 148 (253)
T ss_pred cc-------cchhhhhc-eEEEEecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChh
Confidence 21 01112343 7999999999888 599999976432211100 112345566677776421 1248899
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. + ++|||++|||+.. +..++|++++++
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~---~-~~tvii~sh~~~~--~~~~~d~v~~l~ 222 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK---K-EYTVIIVTHNMQQ--AARVSDYTGFMY 222 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---h-CceEEEEEcCHHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 2 5899999996555 888899999987
Q ss_pred h---ccccccccee
Q 016817 290 Y---LGVSEISGVY 300 (382)
Q Consensus 290 ~---~~~~~~~~v~ 300 (382)
+ +..+++++++
T Consensus 223 ~G~i~~~g~~~~~~ 236 (253)
T PRK14261 223 LGKLIEFDKTTQIF 236 (253)
T ss_pred CCEEEEcCCHHHHH
Confidence 6 3334444443
No 248
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.6e-40 Score=313.94 Aligned_cols=201 Identities=16% Similarity=0.092 Sum_probs=161.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-----ccceeeeEeecCCCccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-----~~G~I~i~G~~i~~~~~ 140 (382)
+++++|++++| +.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...
T Consensus 4 ~l~~~~l~~~~-~~~------il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~-- 74 (254)
T PRK10418 4 QIELRNIALQA-AQP------LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC-- 74 (254)
T ss_pred EEEEeCeEEEe-ccc------eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--
Confidence 68899999999 222 5999999999999999999999999999999999986 479999999865310
Q ss_pred ceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcCccccccccccCcccccccc--ccccccCCCcc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND--AEIDDLKSSPK 216 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--~~~~~~~~LSG 216 (382)
..+++.++|+||++. +.+..|+.+++.+.....+. ....+++.++++.+++.+. ..++.+.+|||
T Consensus 75 ----------~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~ 143 (254)
T PRK10418 75 ----------ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK-PADDATLTAALEAVGLENAARVLKLYPFEMSG 143 (254)
T ss_pred ----------ccccceEEEEecCCccccCccccHHHHHHHHHHHcCC-ChHHHHHHHHHHHcCCCChhhhhhcCCcccCH
Confidence 012237999999974 34556887877543222211 1123456778889998752 23488999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|.|||++||+++. +..+||+++++++
T Consensus 144 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~--~~~g~til~~sH~~~~--~~~~~d~v~~l~~ 216 (254)
T PRK10418 144 GMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV--QKRALGMLLVTHDMGV--VARLADDVAVMSH 216 (254)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH--HhcCcEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999 999999999999999983 3458999999995555 8889999999986
No 249
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=312.95 Aligned_cols=202 Identities=13% Similarity=0.098 Sum_probs=160.3
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcccc
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~~~ 141 (382)
+++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|+++....
T Consensus 7 ~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~-- 78 (251)
T PRK14244 7 SVKNLNLWYGSK--Q----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD-- 78 (251)
T ss_pred EeeeEEEEECCe--e----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc--
Confidence 578999999632 2 5999999999999999999999999999999999974 3899999998653211
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC---ccccccccccCcccccccc---ccccccCCCc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG---VHHNQRCLRSDDCALMKND---AEIDDLKSSP 215 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~---~~~~~~~~~~l~~~~L~~~---~~~~~~~~LS 215 (382)
.....+|+ .++|+||++.+|+. |+.+|+.+........ ...++.+.++++.+++.+. ..++.+.+||
T Consensus 79 -----~~~~~~~~-~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 151 (251)
T PRK14244 79 -----TNVVLLRA-KVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELS 151 (251)
T ss_pred -----cchHHHhh-hEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCC
Confidence 01112343 89999999988884 9999997542111110 0112345667888888642 2237889999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . +|+|||+||||++. +..+||+++++++
T Consensus 152 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiiiisH~~~~--~~~~~d~i~~l~~ 223 (251)
T PRK14244 152 GGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL---K-KNFTIIVVTHSMKQ--AKKVSDRVAFFQS 223 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEeCCHHH--HHhhcCEEEEEEC
Confidence 999999999999999999999999 99999999999999997 3 37999999996555 8889999999986
No 250
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.9e-40 Score=305.22 Aligned_cols=203 Identities=15% Similarity=0.055 Sum_probs=163.9
Q ss_pred hhHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc----ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~----~~G~I~i~G~~i~~~~ 139 (382)
.+.++||+++|++.+ .. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~-- 76 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYAR----ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP-- 76 (226)
T ss_pred cceeecceeeeecCccccc----cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--
Confidence 456899999996542 22 6999999999999999999999999999999999986 59999999986421
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-cc---ccccccc-cCccccccccccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VH---HNQRCLR-SDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~---~~~~~~~-~l~~~~L~~~~~~~~~~~L 214 (382)
..+| +.++|+||++.+|+.+|+.+|+.+........ .. ....+.+ .++.+++.+... +.+.+|
T Consensus 77 ----------~~~~-~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~L 144 (226)
T cd03234 77 ----------DQFQ-KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG-NLVKGI 144 (226)
T ss_pred ----------HHhc-ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc-ccccCc
Confidence 1133 38999999999999899999997643221111 01 1112334 788888876544 889999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+|||+|||||+.+|++||||| +||+.++..+.+.|+++ .+.|.|+|++||+++ +++..+||+++++++
T Consensus 145 S~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~---~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~ 219 (226)
T cd03234 145 SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL---ARRNRIVILTIHQPR-SDLFRLFDRILLLSS 219 (226)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEecCCC-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999 99999999999999997 335899999999652 237889999998875
No 251
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8.2e-40 Score=306.26 Aligned_cols=183 Identities=16% Similarity=0.102 Sum_probs=152.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.... ...+|++|++.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---------------~~~~~v~q~~~l 65 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG---------------PDRMVVFQNYSL 65 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---------------hhheEEecCccc
Confidence 578999999999999999999999999999999999 8999999998764211 124799999999
Q ss_pred CChhhhhhhHHHHHhhhhcCc---cccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 167 FNYNRVHEGLEELSSWMSEGV---HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
|+.+|+.+|+........... ...+++.++++.+++.+... +++.+|||||||||+|||||+.+|++||||| +
T Consensus 66 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 66 LPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD-KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred CCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 998999999976421110111 11234667888999986554 8999999999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.++..+.+.|+++. ++.|+|||+||||++. +..+||++++|++
T Consensus 145 LD~~~~~~l~~~l~~~~--~~~~~tii~~sH~~~~--~~~~~d~v~~l~~ 190 (230)
T TIGR01184 145 LDALTRGNLQEELMQIW--EEHRVTVLMVTHDVDE--ALLLSDRVVMLTN 190 (230)
T ss_pred CCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhcCEEEEEeC
Confidence 99999999999999983 3458999999996655 8889999999976
No 252
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=316.85 Aligned_cols=209 Identities=16% Similarity=0.099 Sum_probs=165.3
Q ss_pred cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeec
Q 016817 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTS 134 (382)
Q Consensus 61 ~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~ 134 (382)
+...++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.+
T Consensus 20 ~~~~~~l~~~nl~~~~~~~--~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~ 93 (272)
T PRK14236 20 SDEQTALEVRNLNLFYGDK--Q----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN 93 (272)
T ss_pred CCCCcEEEEEEEEEEECCe--e----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE
Confidence 3345689999999999642 2 5999999999999999999999999999999999975 49999999987
Q ss_pred CCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccccc---cccc
Q 016817 135 SGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMKND---AEID 209 (382)
Q Consensus 135 i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~---~~~~ 209 (382)
+.... .....+|+ .++|++|++.+|+. |+.+|+........... ...+.+.++++.+++.+. ..++
T Consensus 94 i~~~~-------~~~~~~~~-~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 164 (272)
T PRK14236 94 IYDKK-------VDVAELRR-RVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHE 164 (272)
T ss_pred Ccccc-------cCHHHHhc-cEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhC
Confidence 64211 01112344 89999999988885 99999965421111001 112345666777777431 2247
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
.+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ .+ +.|||++|||++. +.++||+++
T Consensus 165 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~---~~-~~tiiivtH~~~~--~~~~~d~i~ 238 (272)
T PRK14236 165 NAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL---KS-KYTIVIVTHNMQQ--AARVSDYTA 238 (272)
T ss_pred CcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH---Hh-CCeEEEEeCCHHH--HHhhCCEEE
Confidence 899999999999999999999999999999 99999999999999998 33 6899999996555 888999999
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
++++
T Consensus 239 ~l~~ 242 (272)
T PRK14236 239 FMYM 242 (272)
T ss_pred EEEC
Confidence 9987
No 253
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.2e-39 Score=296.17 Aligned_cols=176 Identities=16% Similarity=0.114 Sum_probs=142.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.... .....+++ .++|++|++.
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-------~~~~~~~~-~i~~~~q~~~ 78 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR-------KGLLERRQ-RVGLVFQDPD 78 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccc-------cchHHHHh-hEEEEecChh
Confidence 6999999999999999999999999999999999999 8999999998753110 11122343 7999999973
Q ss_pred --CCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 166 --GFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 166 --l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
+|+ .|+.+|+.+........ ....+++.++++.+++.+..+ +++.+|||||||||+|||||+.+|++|||||
T Consensus 79 ~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 156 (190)
T TIGR01166 79 DQLFA-ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTA 156 (190)
T ss_pred hcccc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 554 79999997543211111 111235667888999986654 9999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+||+.++..+.+.|+++ +++|+|||+||||++.
T Consensus 157 ~LD~~~~~~~~~~l~~~---~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 157 GLDPAGREQMLAILRRL---RAEGMTVVISTHDVDL 189 (190)
T ss_pred cCCHHHHHHHHHHHHHH---HHcCCEEEEEeecccc
Confidence 99999999999999998 3458999999997654
No 254
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.4e-40 Score=311.49 Aligned_cols=207 Identities=15% Similarity=0.047 Sum_probs=163.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHh--hc-ccceeeeEeecCCCccc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl--~~-~~G~I~i~G~~i~~~~~ 140 (382)
+.+++++|+++.|++. . +|+++||+|++||+++|+||||||||||+++|+|+ ++ ++|+|+++|.++.....
T Consensus 5 ~~~l~~~~l~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 5 KPILEIKNLHASVNEN--E----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred CceEEEEeEEEEeCCE--E----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 4479999999999642 2 59999999999999999999999999999999998 45 79999999987643221
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCcc------ccccccccCccccccccccccccC
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGVH------HNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~~------~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
.. .+...++|++|++.+++..++.+++........ .... ..+++.++++.+++.+...++.+.
T Consensus 79 ------~~---~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 149 (252)
T CHL00131 79 ------EE---RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN 149 (252)
T ss_pred ------hh---hheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc
Confidence 11 111248899999999998898888865321110 0000 013356678888987322347776
Q ss_pred -CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh-hhhhhh
Q 016817 213 -SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL-DARLKI 287 (382)
Q Consensus 213 -~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~-~d~v~l 287 (382)
+|||||+|||+|||||+.+|++||||| +||+.++..+.++|+++ .+.|.|||++|||++. +..+ ||++++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~~g~tii~~tH~~~~--~~~~~~d~i~~ 224 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL---MTSENSIILITHYQRL--LDYIKPDYVHV 224 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEecCHHH--HHhhhCCEEEE
Confidence 599999999999999999999999999 99999999999999998 3358999999997666 7765 899998
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
+++
T Consensus 225 l~~ 227 (252)
T CHL00131 225 MQN 227 (252)
T ss_pred EeC
Confidence 876
No 255
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=316.99 Aligned_cols=216 Identities=13% Similarity=0.063 Sum_probs=167.9
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCC
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~ 136 (382)
..++++++||+++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 18 ~~~~l~i~nl~~~~~~~--~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 18 AAPAMAAVNLTLGFAGK--T----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred cCcEEEEeeEEEEECCE--E----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 45689999999999642 2 5999999999999999999999999999999999987 3899999998664
Q ss_pred CcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Cc-cccccccccCcccccccc---cccccc
Q 016817 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GV-HHNQRCLRSDDCALMKND---AEIDDL 211 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~-~~~~~~~~~l~~~~L~~~---~~~~~~ 211 (382)
... ....+++ .++|+||++.+|+ .|+.+|+.+....... .. ...+.+.++++.+++.+. ..++.+
T Consensus 92 ~~~--------~~~~~~~-~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~ 161 (276)
T PRK14271 92 NYR--------DVLEFRR-RVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSP 161 (276)
T ss_pred ccc--------hhHHHhh-heEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCc
Confidence 221 1112344 8999999999888 8999999754211110 00 011223456677777532 123789
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+||||||||++|||||+.+|++||||| +||+.++..+.+.|+++. + +.|||+||||++. +..+||++++|
T Consensus 162 ~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~-~~tiiivsH~~~~--~~~~~dri~~l 235 (276)
T PRK14271 162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA---D-RLTVIIVTHNLAQ--AARISDRAALF 235 (276)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---c-CCEEEEEeCCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 999999999999999983 3 4899999996555 88899999999
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..+++.+++
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 86 3334444443
No 256
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-40 Score=339.65 Aligned_cols=201 Identities=14% Similarity=0.074 Sum_probs=164.4
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
++|++++|++. + +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 1 ~~nl~~~~~~~--~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~------- 67 (491)
T PRK10982 1 MSNISKSFPGV--K----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSS------- 67 (491)
T ss_pred CCceEEEeCCE--E----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCH-------
Confidence 36889999642 2 5999999999999999999999999999999999998 89999999987642211
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc---C-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE---G-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~---~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
...++ +.++|+||++.+++.+|+.+|+.+....... . ....+++.++++.+++.+... +++.+|||||||||+
T Consensus 68 -~~~~~-~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 68 -KEALE-NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR-AKVATLSVSQMQMIE 144 (491)
T ss_pred -HHHHh-CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHHHHHHH
Confidence 11123 3799999999888889999999653211100 0 011235667888899986554 899999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ .+.|.|||+||||++. +..+||++++|++
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tvii~tH~~~~--~~~~~d~i~~l~~ 209 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL---KERGCGIVYISHKMEE--IFQLCDEITILRD 209 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999 99999999999999998 3468999999996655 8889999999976
No 257
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6e-40 Score=341.18 Aligned_cols=215 Identities=13% Similarity=0.063 Sum_probs=168.9
Q ss_pred cCchhHHHHHhhhccc---CCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeE-eecCCC
Q 016817 63 PDGLNELRHKFLSYRS---GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA-QTSSGN 137 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~---~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~-G~~i~~ 137 (382)
..++++++|++++|++ +... +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++ |.+..+
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~ 351 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVK----AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVD 351 (520)
T ss_pred CCceEEEeccEEEeccCCCCCce----EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccc
Confidence 3458999999999953 2222 5999999999999999999999999999999999998 89999996 643211
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCcccccccc----ccccccC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKND----AEIDDLK 212 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~----~~~~~~~ 212 (382)
... .........++ .+||+||++.+++.+|+.+|+.+.. ..... ...++++.++++.+++.+. ..++++.
T Consensus 352 ~~~---~~~~~~~~~~~-~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 426 (520)
T TIGR03269 352 MTK---PGPDGRGRAKR-YIGILHQEYDLYPHRTVLDNLTEAI-GLELPDELARMKAVITLKMVGFDEEKAEEILDKYPD 426 (520)
T ss_pred ccc---cchhhHHHHhh-hEEEEccCcccCCCCcHHHHHHHHH-HcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChh
Confidence 110 00011112333 7999999998999899999997532 11111 1112356678889999641 2358999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+++.|+++. ++.|.|||+||||++. +.++||++++++
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tvi~vsHd~~~--~~~~~d~i~~l~ 502 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR--EEMEQTFIIVSHDMDF--VLDVCDRAALMR 502 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HHcCcEEEEEeCCHHH--HHHhCCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 3458999999997666 889999999997
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 503 ~ 503 (520)
T TIGR03269 503 D 503 (520)
T ss_pred C
Confidence 5
No 258
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-40 Score=309.11 Aligned_cols=201 Identities=19% Similarity=0.132 Sum_probs=155.5
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|++.... +|+++||++++|++++|+||||||||||+++|+|+++ ++|+|+++|+++....
T Consensus 1 i~~~~l~~~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------ 70 (234)
T cd03251 1 VEFKNVTFRYPGDGPP----VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT------ 70 (234)
T ss_pred CEEEEEEEEeCCCCcc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC------
Confidence 3578999999654212 5999999999999999999999999999999999998 8999999998653211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc-c---ccccccccCccc--cccccccccccCCCcccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV-H---HNQRCLRSDDCA--LMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~-~---~~~~~~~~l~~~--~L~~~~~~~~~~~LSGGqk 219 (382)
...+++ .++|++|++.+|+ .|+.+|+........... . ....+.+.++.+ ++.... ++++.+||||||
T Consensus 71 ---~~~~~~-~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~LS~G~~ 144 (234)
T cd03251 71 ---LASLRR-QIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVI-GERGVKLSGGQR 144 (234)
T ss_pred ---HHHHHh-hEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceee-ccCCCcCCHHHH
Confidence 112343 7999999998887 699999964321100000 0 000122333333 455444 378999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++ . ++.|||++|||++. +.. ||+++++++
T Consensus 145 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~--~~~-~d~v~~l~~ 211 (234)
T cd03251 145 QRIAIARALLKDPPILILDEATSALDTESERLVQAALERL---M-KNRTTFVIAHRLST--IEN-ADRIVVLED 211 (234)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh---c-CCCEEEEEecCHHH--Hhh-CCEEEEecC
Confidence 99999999999999999999 99999999999999998 3 37899999997665 765 899999876
No 259
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.8e-40 Score=348.21 Aligned_cols=238 Identities=16% Similarity=0.151 Sum_probs=187.3
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhh--------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
.+..|+.+++.....+..+..+.+|+.++++.++.. .....+.++++||+|+|+++. + +|+|+||+|
T Consensus 284 ~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~----~l~~i~~~i 358 (585)
T TIGR01192 284 LLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSS-Q----GVFDVSFEA 358 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCC-c----cccceeEEE
Confidence 567899999999998888888889998888754321 011124689999999997533 2 699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.+.+. ..+|+ .++|++|++.+|+ .|+++
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~---------~~~~~-~i~~v~q~~~lf~-~ti~~ 427 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR---------ESLRK-SIATVFQDAGLFN-RSIRE 427 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH---------HHHHh-heEEEccCCccCc-ccHHH
Confidence 9999999999999999999999999999 89999999997654321 12454 8999999999997 79999
Q ss_pred hHHHHHhhhhcCccccccccccCccccccc-----------cccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKN-----------DAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
|+.+.. ....++++.++++.+++.+ ... .....||||||||++|||||+.+|++||||| +
T Consensus 428 Ni~~~~-----~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~-~~~~~LSgGq~qrl~lARall~~p~ililDEpts~ 501 (585)
T TIGR01192 428 NIRLGR-----EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG-ERGNRLSGGERQRLAIARAILKNAPILVLDEATSA 501 (585)
T ss_pred HHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 996431 1122333444444444332 222 4566799999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.++..+.+.|.++. .++|+|+|||++ +.+. .+|+++++++
T Consensus 502 LD~~~~~~i~~~l~~~~----~~~tvI~isH~~--~~~~-~~d~i~~l~~ 544 (585)
T TIGR01192 502 LDVETEARVKNAIDALR----KNRTTFIIAHRL--STVR-NADLVLFLDQ 544 (585)
T ss_pred CCHHHHHHHHHHHHHHh----CCCEEEEEEcCh--HHHH-cCCEEEEEEC
Confidence 99999999999999872 489999999955 4465 5888888876
No 260
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3e-40 Score=307.72 Aligned_cols=206 Identities=14% Similarity=0.098 Sum_probs=161.5
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..++++++|++++|++.... .+|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-- 82 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDT---LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE-- 82 (226)
T ss_pred cCceEEEEEEEEEeCCCCCC---ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC--
Confidence 46789999999999753211 16999999999999999999999999999999999998 8999999998653211
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC----ccccccccccCccc--cccccccccccCCCc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCA--LMKNDAEIDDLKSSP 215 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~--~L~~~~~~~~~~~LS 215 (382)
....+ +.++|++|++.+|+ .|+.+|+.+........ ......+.++++.+ |+.+... +++.+||
T Consensus 83 -------~~~~~-~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LS 152 (226)
T cd03248 83 -------HKYLH-SKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG-EKGSQLS 152 (226)
T ss_pred -------HHHHH-hhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCC
Confidence 11133 37999999998886 69999996432110000 00011234556666 7776554 8899999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||+|||||+.+|++||||| +||+.++..+.+.|+++. + +.|+|++|||++. +. .||+++++++
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~-~~tii~~sh~~~~--~~-~~d~i~~l~~ 223 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP---E-RRTVLVIAHRLST--VE-RADQILVLDG 223 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---C-CCEEEEEECCHHH--HH-hCCEEEEecC
Confidence 999999999999999999999999 999999999999999973 2 5899999997665 75 4889888764
No 261
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-40 Score=316.74 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=164.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|+++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~~~-~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~------ 73 (272)
T PRK15056 5 AGIVVNDVTVTWRNGH-T----ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ------ 73 (272)
T ss_pred ceEEEEeEEEEecCCc-E----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH------
Confidence 3688999999996332 2 5999999999999999999999999999999999998 89999999986421
Q ss_pred ehhhhhhhHhhhccceeeEeCCCC--ChhhhhhhHHHHHhh-hh---c-CccccccccccCccccccccccccccCCCcc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGF--NYNRVHEGLEELSSW-MS---E-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~--~~~tv~eni~~~~~~-~~---~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
..++..++|++|++.+. ...++.+++...... .. . .....+.+.++++.+|+.+..+ +++.+|||
T Consensus 74 -------~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSg 145 (272)
T PRK15056 74 -------ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-RQIGELSG 145 (272)
T ss_pred -------hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-CCcccCCH
Confidence 01223699999997642 224567776432110 00 0 0111234567788999986654 89999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--c
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--L 291 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--~ 291 (382)
|||||++|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|||+||||++. +..+||+++++++ +
T Consensus 146 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~---~~~g~tviivsH~~~~--~~~~~d~v~~~~G~i~ 220 (272)
T PRK15056 146 GQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL---RDEGKTMLVSTHNLGS--VTEFCDYTVMVKGTVL 220 (272)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEECCEEE
Confidence 99999999999999999999999 99999999999999998 3358999999996555 8889999888865 3
Q ss_pred cccccccee
Q 016817 292 GVSEISGVY 300 (382)
Q Consensus 292 ~~~~~~~v~ 300 (382)
..+++++++
T Consensus 221 ~~g~~~~~~ 229 (272)
T PRK15056 221 ASGPTETTF 229 (272)
T ss_pred eecCHHhcc
Confidence 344444444
No 262
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-40 Score=312.01 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=168.8
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..++++++|++++|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.-..+....
T Consensus 7 ~~~~i~~~~~~~~~~~~~------~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 7 AEDVFNISRLYLYINDKA------ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhhheeeeeEEEecCCce------eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccc
Confidence 456899999999996433 5999999999999999999999999999999999999 888887777422110010
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Cc-cccccccccCccccccc---cccccccCCCcc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GV-HHNQRCLRSDDCALMKN---DAEIDDLKSSPK 216 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~-~~~~~~~~~l~~~~L~~---~~~~~~~~~LSG 216 (382)
... ....+|. .++|++|++.+|+..|+.+|+.+....... .. ...+.+.++++.+++.+ ...++.+..|||
T Consensus 81 ~~~---~~~~~~~-~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~ 156 (257)
T PRK14246 81 FQI---DAIKLRK-EVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSG 156 (257)
T ss_pred ccC---CHHHHhc-ceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCH
Confidence 000 1112344 899999999999888999999754321111 11 11234566778888853 123478999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--- 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--- 290 (382)
|||||++|||||+.+|++||||| +||+.++..+.+.|.++ . ++.|||+||||++. +..+||+++++++
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~---~-~~~tiilvsh~~~~--~~~~~d~v~~l~~g~i 230 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL---K-NEIAIVIVSHNPQQ--VARVADYVAFLYNGEL 230 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCcEEEEEECCHHH--HHHhCCEEEEEECCEE
Confidence 99999999999999999999999 99999999999999987 2 35899999996555 8889999999976
Q ss_pred ccccccccee
Q 016817 291 LGVSEISGVY 300 (382)
Q Consensus 291 ~~~~~~~~v~ 300 (382)
...++..+++
T Consensus 231 ~~~g~~~~~~ 240 (257)
T PRK14246 231 VEWGSSNEIF 240 (257)
T ss_pred EEECCHHHHH
Confidence 3344444444
No 263
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-39 Score=337.33 Aligned_cols=209 Identities=10% Similarity=0.014 Sum_probs=167.5
Q ss_pred CchhHHHHHhhhccc-CCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCccc
Q 016817 64 DGLNELRHKFLSYRS-GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~-~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~ 140 (382)
..+++++|+++.|+. ++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~- 331 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIK----RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN- 331 (506)
T ss_pred CceEEEecCccccccccccc----cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC-
Confidence 457999999999953 1222 6999999999999999999999999999999999986 5999999998763211
Q ss_pred ceeehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHh-hhhc-C--c--cccccccccCcccccccccccccc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSS-WMSE-G--V--HHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~-~~~~-~--~--~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
. ....+. .+||++|++ .+++.+|+.+|+..... .+.. + . ...+++.++++.+++.....++++
T Consensus 332 -----~--~~~~~~-~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 403 (506)
T PRK13549 332 -----P--QQAIAQ-GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI 403 (506)
T ss_pred -----H--HHHHHC-CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc
Confidence 0 111233 799999995 47788999999965321 1100 0 0 112456778999999632234999
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++ .++|.|||+||||++. +.++||++++|
T Consensus 404 ~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tvi~~sHd~~~--~~~~~d~v~~l 478 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL---VQQGVAIIVISSELPE--VLGLSDRVLVM 478 (506)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH---HHCCCEEEEECCCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3458999999996666 89999999999
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 479 ~~ 480 (506)
T PRK13549 479 HE 480 (506)
T ss_pred EC
Confidence 76
No 264
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-40 Score=293.17 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=143.5
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. + +|+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 68 (173)
T cd03230 1 IEVRNLSKRYGKK--T----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP------ 68 (173)
T ss_pred CEEEEEEEEECCe--e----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch------
Confidence 3578899999642 2 5999999999999999999999999999999999998 8999999998654211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..+++ .++|+||++.+|+..|+.+|+. |||||+|||+||
T Consensus 69 ----~~~~~-~i~~~~q~~~~~~~~tv~~~~~------------------------------------LS~G~~qrv~la 107 (173)
T cd03230 69 ----EEVKR-RIGYLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALA 107 (173)
T ss_pred ----Hhhhc-cEEEEecCCccccCCcHHHHhh------------------------------------cCHHHHHHHHHH
Confidence 12343 8999999998888889888872 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++. ++|.|+|++|||+.. +..+||+++++++
T Consensus 108 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~---~~g~tiii~th~~~~--~~~~~d~i~~l~~ 170 (173)
T cd03230 108 QALLHDPELLILDEPTSGLDPESRREFWELLRELK---KEGKTILLSSHILEE--AERLCDRVAILNN 170 (173)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH---HCCCEEEEECCCHHH--HHHhCCEEEEEeC
Confidence 99999999999999 999999999999999983 348999999996665 8888999888764
No 265
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.6e-39 Score=306.80 Aligned_cols=205 Identities=13% Similarity=0.032 Sum_probs=156.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++|++++|++.. +|+++||+|++|++++|+||||||||||+++|+|++ + ++|+|.++|+++.....
T Consensus 1 ~i~~~nl~~~~~~~~------~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~-- 72 (248)
T PRK09580 1 MLSIKDLHVSVEDKA------ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP-- 72 (248)
T ss_pred CeEEEEEEEEeCCee------eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCH--
Confidence 467899999996432 599999999999999999999999999999999994 5 79999999986542211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCc---c---ccccccccCccccccccccccccC-C
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGV---H---HNQRCLRSDDCALMKNDAEIDDLK-S 213 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~---~---~~~~~~~~l~~~~L~~~~~~~~~~-~ 213 (382)
. ..++..++|++|++.+++..+..+++........ ... . ..+.+.++++.+++.+...++.+. +
T Consensus 73 ----~---~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 145 (248)
T PRK09580 73 ----E---DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVG 145 (248)
T ss_pred ----H---HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCC
Confidence 1 1222369999999888876665554432211100 000 0 012345567777885333446665 7
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh-hhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL-DARLKICE 289 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~-~d~v~ll~ 289 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|+|||+||||++. +..+ +|++++++
T Consensus 146 LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l---~~~~~tiii~sH~~~~--~~~~~~d~i~~l~ 220 (248)
T PRK09580 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL---RDGKRSFIIVTHYQRI--LDYIKPDYVHVLY 220 (248)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHhhhCCEEEEEE
Confidence 99999999999999999999999999 99999999999999988 3458999999997665 7776 79888886
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 221 ~ 221 (248)
T PRK09580 221 Q 221 (248)
T ss_pred C
Confidence 5
No 266
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.7e-40 Score=304.21 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=156.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.++++|++++|+.+..+ +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----- 72 (221)
T cd03244 2 DIEFKNVSLRYRPNLPP----VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG----- 72 (221)
T ss_pred cEEEEEEEEecCCCCcc----cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC-----
Confidence 36789999999754322 5999999999999999999999999999999999998 8999999998653221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSS 214 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~L 214 (382)
...+++ .++|+||++.+++ .|+.+|+.... . ...+++.++++.+++.+.+. ++++.+|
T Consensus 73 ----~~~~~~-~i~~~~q~~~l~~-~tv~enl~~~~-----~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~L 140 (221)
T cd03244 73 ----LHDLRS-RISIIPQDPVLFS-GTIRSNLDPFG-----E-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENL 140 (221)
T ss_pred ----HHHHhh-hEEEECCCCcccc-chHHHHhCcCC-----C-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcC
Confidence 112343 8999999998876 69999985321 1 11223444455555543321 2678999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+||++|||||+.+|++||||| +||+.++..+.+.|+++ . ++.|||++|||++. +.. ||+++++++
T Consensus 141 S~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~--~~~-~d~i~~l~~ 212 (221)
T cd03244 141 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA---F-KDCTVLTIAHRLDT--IID-SDRILVLDK 212 (221)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh---c-CCCEEEEEeCCHHH--Hhh-CCEEEEEEC
Confidence 9999999999999999999999999 99999999999999997 2 36899999996655 765 788888865
No 267
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.8e-40 Score=375.69 Aligned_cols=249 Identities=12% Similarity=0.077 Sum_probs=201.3
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhh-hh-------------------------------------hcCcC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMER-LA-------------------------------------LIAPD 64 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------------------------~~~~~ 64 (382)
..+..|+..++.....++....+.+|+.++++..+ .. ..+..
T Consensus 1227 ~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (1560)
T PTZ00243 1227 MQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQA 1306 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCC
Confidence 45678889999999999999999999999885221 00 00012
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+.|+|+||+|+|+.+..+ +|+||||+|++||.+||||+||||||||+++|.|+++ ++|+|.+||.|+.+.+.
T Consensus 1307 G~I~f~nVsf~Y~~~~~~----vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l--- 1379 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPL----VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL--- 1379 (1560)
T ss_pred CeEEEEEEEEEeCCCCCc----eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCH---
Confidence 469999999999765433 5999999999999999999999999999999999999 89999999998865432
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccccccc-----------C
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------K 212 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~ 212 (382)
..+|+ .||||+|++.+|+ .|+++||... ....++++.++++.+++.+++. ..| .
T Consensus 1380 ------~~LR~-~I~iVpQdp~LF~-gTIreNIdp~------~~~sdeeI~~Al~~a~l~~~I~-~lp~Gldt~vge~G~ 1444 (1560)
T PTZ00243 1380 ------RELRR-QFSMIPQDPVLFD-GTVRQNVDPF------LEASSAEVWAALELVGLRERVA-SESEGIDSRVLEGGS 1444 (1560)
T ss_pred ------HHHHh-cceEECCCCcccc-ccHHHHhCcc------cCCCHHHHHHHHHHCCChHHHh-hCcccccccccCCcC
Confidence 23675 9999999999998 6999999521 2334567888899888876543 322 4
Q ss_pred CCccceeeecceeeeehhH-HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNI-AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~-P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.||||||||++|||||+++ |+|||||| +||+++...|++.|++.. +++|+|+|+| +++++.. ||+|++|
T Consensus 1445 nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~----~~~TvI~IAH--Rl~ti~~-~DrIlVL 1517 (1560)
T PTZ00243 1445 NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF----SAYTVITIAH--RLHTVAQ-YDKIIVM 1517 (1560)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC----CCCEEEEEec--cHHHHHh-CCEEEEE
Confidence 5999999999999999996 89999999 999999999999999863 5799999999 6665764 7888888
Q ss_pred hh---ccccccccee
Q 016817 289 EY---LGVSEISGVY 300 (382)
Q Consensus 289 ~~---~~~~~~~~v~ 300 (382)
++ +..|.+++++
T Consensus 1518 d~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1518 DHGAVAEMGSPRELV 1532 (1560)
T ss_pred ECCEEEEECCHHHHH
Confidence 76 5556665555
No 268
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-40 Score=305.74 Aligned_cols=196 Identities=14% Similarity=0.144 Sum_probs=153.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.++++|++++|++.. . +|+|+||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~~-~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----- 71 (229)
T cd03254 2 EIEFENVNFSYDEKK-P----VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS----- 71 (229)
T ss_pred eEEEEEEEEecCCCC-c----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC-----
Confidence 367889999996422 1 6999999999999999999999999999999999999 8999999998653211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-----------cccccccccccCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-----------LMKNDAEIDDLKS 213 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~~ 213 (382)
...+++ .++|+||++.+|+ .|+.+|+.... .......+.++++.+ ++..... +++.+
T Consensus 72 ----~~~~~~-~i~~~~q~~~~~~-~tv~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ 139 (229)
T cd03254 72 ----RKSLRS-MIGVVLQDTFLFS-GTIMENIRLGR-----PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGN 139 (229)
T ss_pred ----HHHHhh-hEEEecCCchhhh-hHHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhCcccccCHhh-cCCCc
Confidence 112343 7999999998887 49999985431 111112223333333 3333332 66799
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . +|.|||+||||++. +. .||+++++++
T Consensus 140 LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~--~~-~~d~i~~l~~ 212 (229)
T cd03254 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL---M-KGRTSIIIAHRLST--IK-NADKILVLDD 212 (229)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh---c-CCCEEEEEecCHHH--Hh-hCCEEEEEeC
Confidence 99999999999999999999999999 99999999999999997 3 48999999996655 65 4899988876
No 269
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=5.8e-40 Score=343.85 Aligned_cols=239 Identities=13% Similarity=0.035 Sum_probs=189.6
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhh--hh---c-----------CcCchhHHHHHhhhcccCC--eeee
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL--AL---I-----------APDGLNELRHKFLSYRSGD--FWIP 84 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~-----------~~~~~i~i~nvs~~y~~~~--~~v~ 84 (382)
.++.+|+.+++.....++.+..+.+|+.++++..+. .. + .....|+++||+|+|++.+ ..
T Consensus 278 ~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~-- 355 (555)
T TIGR01194 278 LYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEG-- 355 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcC--
Confidence 467899999999999999999999999999753111 00 0 0124689999999997531 11
Q ss_pred cCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 85 IGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 85 ~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
++|+|+||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.+.+. ..+|+ .++|++|+
T Consensus 356 -~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~---------~~~~~-~i~~v~q~ 424 (555)
T TIGR01194 356 -FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR---------DDYRD-LFSAIFAD 424 (555)
T ss_pred -ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---------HHHHh-hCcEEccC
Confidence 15999999999999999999999999999999999999 89999999998764331 22554 89999999
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccccccc------CCCccceeeecceeeeehhHHHHHHH
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL------KSSPKYVLRRVDFAMVVSNIAEIYKA 237 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~------~~LSGGqkQRvaIAraL~~~P~iLLL 237 (382)
+.+|+ .|+++|.. +...++++.++++.+++.+... +.| ..||||||||++|||||+.+|++|||
T Consensus 425 ~~lf~-~ti~~n~~--------~~~~~~~~~~~~~~~~l~~~~~-~lp~g~~t~~~LSgGq~qRlalaRall~~~~ilil 494 (555)
T TIGR01194 425 FHLFD-DLIGPDEG--------EHASLDNAQQYLQRLEIADKVK-IEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF 494 (555)
T ss_pred hhhhh-hhhhcccc--------cchhHHHHHHHHHHcCCchhhc-ccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99997 67888741 1223455677888888886654 444 45999999999999999999999999
Q ss_pred Hh---cCCCCcchhhhhhcc-CccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 238 LK---AGDSKPLDATKRLFS-APGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 238 DE---~LD~~~~~~i~~~l~-~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|| +||+.+++.+.+.+. .+ +..|+|+|+|||++ +.+ ..||+|+++++
T Consensus 495 DE~ts~LD~~~~~~i~~~l~~~~---~~~~~tiiiisH~~--~~~-~~~d~i~~l~~ 545 (555)
T TIGR01194 495 DEWAADQDPAFKRFFYEELLPDL---KRQGKTIIIISHDD--QYF-ELADQIIKLAA 545 (555)
T ss_pred eCCccCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeccH--HHH-HhCCEEEEEEC
Confidence 99 999999999988654 34 23589999999954 335 46888888875
No 270
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=337.24 Aligned_cols=204 Identities=11% Similarity=0.087 Sum_probs=166.2
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|+++.| +. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++....
T Consensus 263 ~~~l~~~~l~~~~--~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~--- 331 (510)
T PRK09700 263 ETVFEVRNVTSRD--RK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS--- 331 (510)
T ss_pred CcEEEEeCccccC--CC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCC---
Confidence 4579999999976 22 5999999999999999999999999999999999998 8999999998653211
Q ss_pred eehhhhhhhHhhhccceeeEe---CCCCChhhhhhhHHHHHhh----hhc--C----ccccccccccCcccccc-ccccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYD---SRGFNYNRVHEGLEELSSW----MSE--G----VHHNQRCLRSDDCALMK-NDAEI 208 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~---~~l~~~~tv~eni~~~~~~----~~~--~----~~~~~~~~~~l~~~~L~-~~~~~ 208 (382)
.....++ .+||+||+ +.+++.+|+.+|+...... +.. + ....+.+.++++.+++. +.. +
T Consensus 332 -----~~~~~~~-~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~ 404 (510)
T PRK09700 332 -----PLDAVKK-GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-N 404 (510)
T ss_pred -----HHHHHHC-CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-c
Confidence 0112333 79999998 4688889999998653210 000 0 01123456788999996 454 4
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ .++|.|||+||||++. +..+||++
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tvi~vsHd~~~--~~~~~d~i 479 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL---ADDGKVILMVSSELPE--IITVCDRI 479 (510)
T ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHH---HHCCCEEEEEcCCHHH--HHhhCCEE
Confidence 9999999999999999999999999999999 99999999999999998 3458999999997666 88999999
Q ss_pred hhhhh
Q 016817 286 KICEY 290 (382)
Q Consensus 286 ~ll~~ 290 (382)
+++++
T Consensus 480 ~~l~~ 484 (510)
T PRK09700 480 AVFCE 484 (510)
T ss_pred EEEEC
Confidence 99876
No 271
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.5e-39 Score=305.33 Aligned_cols=197 Identities=16% Similarity=0.140 Sum_probs=153.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|+++.|++.... ++|+|+||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 l~i~~l~~~~~~~~~~---~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~------ 71 (238)
T cd03249 1 IEFKNVSFRYPSRPDV---PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN------ 71 (238)
T ss_pred CeEEEEEEecCCCCCc---cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcC------
Confidence 3578999999643211 15999999999999999999999999999999999999 8999999998653211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCc---------cc--cccccccccccCCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDD---------CA--LMKNDAEIDDLKSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~---------~~--~L~~~~~~~~~~~L 214 (382)
...+++ .++|++|++.+++ .|+.+|+.+.... . ..+...+.++ .+ ++.... ++++.+|
T Consensus 72 ---~~~~~~-~i~~~~q~~~~~~-~tv~e~l~~~~~~---~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~L 140 (238)
T cd03249 72 ---LRWLRS-QIGLVSQEPVLFD-GTIAENIRYGKPD---A--TDEEVEEAAKKANIHDFIMSLPDGYDTLV-GERGSQL 140 (238)
T ss_pred ---HHHHHh-hEEEECCchhhhh-hhHHHHhhccCCC---C--CHHHHHHHHHHcChHHHHHhhccccceee-ccCCccC
Confidence 111333 7999999988887 6999998643211 0 0111111111 12 333333 3778999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . +|.|||++|||++. +. .||+++++++
T Consensus 141 S~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~-~g~~vi~~sh~~~~--~~-~~d~v~~l~~ 212 (238)
T cd03249 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA---M-KGRTTIVIAHRLST--IR-NADLIAVLQN 212 (238)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh---c-CCCEEEEEeCCHHH--Hh-hCCEEEEEEC
Confidence 9999999999999999999999999 99999999999999997 3 58999999996655 76 7999998876
No 272
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=307.86 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=164.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~~~ 139 (382)
+++++||++.|++. . +|+|+||+|++||+++|+||||||||||+++|+|+.. ++|+|.++|.++....
T Consensus 3 ~l~~~~v~~~~~~~--~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDDA--H----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCCe--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 46789999999642 2 5999999999999999999999999999999999863 5899999998764211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC--ccccccccccCcccccccc---ccccccCCC
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG--VHHNQRCLRSDDCALMKND---AEIDDLKSS 214 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~--~~~~~~~~~~l~~~~L~~~---~~~~~~~~L 214 (382)
......++ .++|+||++.+|+ .|+.+|+.+........ ....+.+.++++.+++.+. ..++++.+|
T Consensus 77 -------~~~~~~~~-~i~~~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 147 (250)
T PRK14266 77 -------VDVVELRK-KVGMVFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGL 147 (250)
T ss_pred -------ccHHHHhh-heEEEecCCccCc-chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccC
Confidence 01112344 8999999999888 59999996542111110 0112345566777776421 224789999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY- 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~- 290 (382)
|||||||++|||||+.+|++||||| +||+.++..+.++|+++ + ++.|||++|||++. +..+|++++++++
T Consensus 148 S~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~-~~~tiii~sh~~~~--~~~~~~~i~~l~~G 221 (250)
T PRK14266 148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL---K-EDYTIVIVTHNMQQ--ATRVSKYTSFFLNG 221 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEECCHHH--HHhhcCEEEEEECC
Confidence 9999999999999999999999999 99999999999999998 2 37899999995555 8899999988765
Q ss_pred --ccccccccee
Q 016817 291 --LGVSEISGVY 300 (382)
Q Consensus 291 --~~~~~~~~v~ 300 (382)
...+++++++
T Consensus 222 ~i~~~g~~~~~~ 233 (250)
T PRK14266 222 EIIESGLTDQIF 233 (250)
T ss_pred eEEEeCCHHHHH
Confidence 3344444443
No 273
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2e-39 Score=290.78 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=140.7
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++... +++++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+..
T Consensus 1 i~~~~l~~~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~------ 70 (173)
T cd03246 1 LEVENVSFRYPGAEPP----VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD------ 70 (173)
T ss_pred CEEEEEEEEcCCCCCc----ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC------
Confidence 3578999999653222 5999999999999999999999999999999999999 8999999998664321
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
...+++ .++|++|++.+|+ .|+.+|+ ||||||||++||
T Consensus 71 ---~~~~~~-~i~~~~q~~~~~~-~tv~~~l-------------------------------------LS~G~~qrv~la 108 (173)
T cd03246 71 ---PNELGD-HVGYLPQDDELFS-GSIAENI-------------------------------------LSGGQRQRLGLA 108 (173)
T ss_pred ---HHHHHh-heEEECCCCcccc-CcHHHHC-------------------------------------cCHHHHHHHHHH
Confidence 111343 8999999998887 4877765 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ +++|+|+|++|||++. +. .||++++|++
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~~~~tii~~sh~~~~--~~-~~d~v~~l~~ 170 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAAL---KAAGATRIVIAHRPET--LA-SADRILVLED 170 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HH-hCCEEEEEEC
Confidence 99999999999999 99999999999999998 3358999999997654 64 7899888764
No 274
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.2e-39 Score=303.10 Aligned_cols=188 Identities=15% Similarity=0.073 Sum_probs=151.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-----ccceeeeEeecCCCcccceeehhhhhhhHhhhccceee
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV 161 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-----~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~ 161 (382)
+|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++... ..+++.++|++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~------------~~~~~~i~~~~ 68 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL------------SIRGRHIATIM 68 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh------------hhhhheeEEEe
Confidence 4899999999999999999999999999999999987 499999999865321 12223799999
Q ss_pred EeCC--CCChhhhhhhHHHHHhhhhc-CccccccccccCccccccc--cccccccCCCccceeeecceeeeehhHHHHHH
Q 016817 162 YDSR--GFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKN--DAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYK 236 (382)
Q Consensus 162 Q~~~--l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLL 236 (382)
|++. +++.+|+.+|+......... .....+++.++++.+++.+ ...++.+.+|||||||||+|||||+.+|++||
T Consensus 69 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vll 148 (230)
T TIGR02770 69 QNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLI 148 (230)
T ss_pred cCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 9974 45667898888543221111 1112345677888999973 22348899999999999999999999999999
Q ss_pred HHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 237 ALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 237 LDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||| +||+.++..+.+.|+++. ++.|+|||++|||++. +..++|++++|++
T Consensus 149 LDEPt~~LD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 201 (230)
T TIGR02770 149 ADEPTTDLDVVNQARVLKLLRELR--QLFGTGILLITHDLGV--VARIADEVAVMDD 201 (230)
T ss_pred EcCCccccCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999 999999999999999983 3348999999995554 8889999999976
No 275
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.1e-39 Score=336.92 Aligned_cols=196 Identities=10% Similarity=0.007 Sum_probs=160.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~----- 71 (490)
T PRK10938 3 SLQISQGTFRLSDTK------TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS----- 71 (490)
T ss_pred eEEEEeEEEEcCCee------ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCC-----
Confidence 688999999996432 5999999999999999999999999999999999998 8999999887543211
Q ss_pred hhhhhhhHhhhccceeeEeCCC--CC------hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRG--FN------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l--~~------~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
. ...++ .+||++|++.+ +. .+++.+++... ....+++.++++.+++.+.. ++++.+|||
T Consensus 72 -~---~~~~~-~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~-~~~~~~LSg 138 (490)
T PRK10938 72 -F---EQLQK-LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-------VKDPARCEQLAQQFGITALL-DRRFKYLST 138 (490)
T ss_pred -H---HHHHH-HhceeccCcchhhcccchhhccccHHHhcccc-------hhHHHHHHHHHHHcCCHhhh-hCCcccCCH
Confidence 1 11233 69999998643 11 35666655311 11234567789999998665 499999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||+||||++. +.++||++++|++
T Consensus 139 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~g~tvii~tH~~~~--~~~~~d~v~~l~~ 210 (490)
T PRK10938 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL---HQSGITLVLVLNRFDE--IPDFVQFAGVLAD 210 (490)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhcCCeEEEEeCCHHH--HHhhCCEEEEEEC
Confidence 99999999999999999999999 99999999999999998 3358999999996665 8899999999976
No 276
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.9e-39 Score=297.37 Aligned_cols=191 Identities=12% Similarity=0.090 Sum_probs=153.9
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.+.++++|++++|+..... +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 4 ~~~l~~~~l~~~~~~~~~~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--- 76 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPP----VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP--- 76 (207)
T ss_pred CCeEEEEEEEEEeCCCCcc----cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCC---
Confidence 3568899999999753222 6999999999999999999999999999999999999 8999999998653211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
....|+ .++|+||++.+|+ .|+.+|+.... . ...+.+.++++ +. +++.+|||||+|||
T Consensus 77 ------~~~~~~-~i~~v~q~~~~~~-~tv~~~l~~~~-----~-~~~~~~~~~l~-------~~-~~~~~LS~G~~qrv 134 (207)
T cd03369 77 ------LEDLRS-SLTIIPQDPTLFS-GTIRSNLDPFD-----E-YSDEEIYGALR-------VS-EGGLNLSQGQRQLL 134 (207)
T ss_pred ------HHHHHh-hEEEEecCCcccC-ccHHHHhcccC-----C-CCHHHHHHHhh-------cc-CCCCcCCHHHHHHH
Confidence 112344 8999999998887 59999985321 1 11122223332 23 78899999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.++|+++ . .|.|+|++|||++. +.. ||+++++++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tiii~th~~~~--~~~-~d~v~~l~~ 198 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREE---F-TNSTILTIAHRLRT--IID-YDKILVMDA 198 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh---c-CCCEEEEEeCCHHH--Hhh-CCEEEEEEC
Confidence 99999999999999999 99999999999999997 3 48999999996665 765 799888875
No 277
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.4e-39 Score=301.02 Aligned_cols=190 Identities=15% Similarity=0.096 Sum_probs=153.2
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
+.++|++++|+... +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~~~------il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------- 88 (224)
T cd03220 23 LGILGRKGEVGEFW------ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------- 88 (224)
T ss_pred hhhhhhhhhcCCeE------EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------
Confidence 78999999996532 5999999999999999999999999999999999999 89999999985310
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
. .. ...+++..|+.+|+.......... ....+++.++++.+++.+... +++.+||||||||++|
T Consensus 89 ------~---~~-----~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~l 153 (224)
T cd03220 89 ------L---GL-----GGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-LPVKTYSSGMKARLAF 153 (224)
T ss_pred ------h---cc-----cccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHH
Confidence 0 11 112345689999997643211111 111234566788889986654 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|+++. +.|.|||+||||++. +..++|+++++++
T Consensus 154 aral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~---~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 217 (224)
T cd03220 154 AIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL---KQGKTVILVSHDPSS--IKRLCDRALVLEK 217 (224)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---hCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 999999999999999983 348999999996555 8888999988875
No 278
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=309.02 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=162.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
...+.++++++.|+.. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++..
T Consensus 6 ~~~~~~~~~~~~~~~~--~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 6 PIVMDCKLDKIFYGNF--M----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CceEEEEeEEEEeCCE--E----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 4467788889999542 2 5999999999999999999999999999999999986 38999999987642
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccc---cccccCCC
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDA---EIDDLKSS 214 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~---~~~~~~~L 214 (382)
... ....+++ .++|+||++.+|+ +|+.+|+.+............+.+.++++.+++.+.+ .++++.+|
T Consensus 80 ~~~-------~~~~~~~-~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L 150 (261)
T PRK14263 80 KGV-------DPVVVRR-YIGMVFQQPNPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSL 150 (261)
T ss_pred ccc-------chHhhhh-ceEEEecCCcccc-ccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccC
Confidence 110 1112343 7999999998885 9999999764321111111124566778888875322 23678899
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||+||++|||||+.+|++||||| +||+.++..+.+.|+++ . ++.|+|++|||++. +..+||++++++
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~---~-~~~tii~isH~~~~--i~~~~d~v~~l~ 222 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL---K-KDYTIALVTHNMQQ--AIRVADTTAFFS 222 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---h-cCCeEEEEeCCHHH--HHHhCCEEEEEe
Confidence 9999999999999999999999999 99999999999999998 3 36899999996555 888999999995
No 279
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-39 Score=292.11 Aligned_cols=172 Identities=20% Similarity=0.157 Sum_probs=144.0
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+.. + +++++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 1 i~~~~l~~~~~~~--~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----- 69 (178)
T cd03229 1 LELKNVSKRYGQK--T----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED----- 69 (178)
T ss_pred CEEEEEEEEECCe--E----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccch-----
Confidence 3578899999642 2 5999999999999999999999999999999999999 89999999986643210
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
.....+ +.++|++|++.+|+..|+.+|+... ||||||||++||
T Consensus 70 --~~~~~~-~~i~~~~q~~~~~~~~t~~~~l~~~----------------------------------lS~G~~qr~~la 112 (178)
T cd03229 70 --ELPPLR-RRIGMVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALA 112 (178)
T ss_pred --hHHHHh-hcEEEEecCCccCCCCCHHHheeec----------------------------------CCHHHHHHHHHH
Confidence 011133 3899999999888878888877310 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++. ++.|.|+|++|||++. +..+||++++|++
T Consensus 113 ~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~--~~~~~tiii~sH~~~~--~~~~~d~i~~l~~ 176 (178)
T cd03229 113 RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ--AQLGITVVLVTHDLDE--AARLADRVVVLRD 176 (178)
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhcCEEEEEeC
Confidence 99999999999999 999999999999999983 3337999999996655 8888999888753
No 280
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.3e-39 Score=289.86 Aligned_cols=170 Identities=13% Similarity=0.070 Sum_probs=144.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++| + |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 3 ~~l~~~~l~~~~------~----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--- 69 (182)
T cd03215 3 PVLEVRGLSVKG------A----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSP--- 69 (182)
T ss_pred cEEEEeccEEEe------e----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCH---
Confidence 368899999988 2 999999999999999999999999999999999999 89999999987643211
Q ss_pred ehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
. ...+ +.++|+||++ .+++..|+.+|+.... . |||||||
T Consensus 70 ---~--~~~~-~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-----~---------------------------LS~G~~q 111 (182)
T cd03215 70 ---R--DAIR-AGIAYVPEDRKREGLVLDLSVAENIALSS-----L---------------------------LSGGNQQ 111 (182)
T ss_pred ---H--HHHh-CCeEEecCCcccCcccCCCcHHHHHHHHh-----h---------------------------cCHHHHH
Confidence 1 1133 3899999985 4777789999985321 0 9999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|||||+.+|++||||| +||+.++..+.+.|+++ .++|.|+|++|||++. +.++||+++++++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~--~~~~~d~v~~l~~ 179 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL---ADAGKAVLLISSELDE--LLGLCDRILVMYE 179 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEecC
Confidence 9999999999999999999 99999999999999998 3358999999996544 8889999988864
No 281
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.9e-39 Score=332.77 Aligned_cols=209 Identities=10% Similarity=0.002 Sum_probs=167.8
Q ss_pred CchhHHHHHhhhcccC-CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCccc
Q 016817 64 DGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~-~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~ 140 (382)
..+++++|++++|+.+ ... +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~- 329 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRK----RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRN- 329 (500)
T ss_pred CceEEEeCCccccccccccc----ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCC-
Confidence 3479999999999432 212 6999999999999999999999999999999999997 4999999998763211
Q ss_pred ceeehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhh-hhc--Ccc---ccccccccCcccccccccccccc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSW-MSE--GVH---HNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~-~~~--~~~---~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
....+|+ ++||++|++ .+++.+|+.+|+.+.... +.. ... .++.+.++++.+++.+...++++
T Consensus 330 -------~~~~~~~-~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 401 (500)
T TIGR02633 330 -------PAQAIRA-GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI 401 (500)
T ss_pred -------HHHHHhC-CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc
Confidence 0112343 899999996 588889999999653211 100 111 12356778999999643234999
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++ .++|.|||+||||++. +.++||+++++
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tviivsHd~~~--~~~~~d~v~~l 476 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL---AQEGVAIIVVSSELAE--VLGLSDRVLVI 476 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH---HhCCCEEEEECCCHHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999 99999999999999998 3458999999997666 99999999998
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 477 ~~ 478 (500)
T TIGR02633 477 GE 478 (500)
T ss_pred EC
Confidence 65
No 282
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2e-39 Score=370.58 Aligned_cols=248 Identities=13% Similarity=0.101 Sum_probs=199.9
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhhc-------------------------CcCchhHHHHHhhhccc
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALI-------------------------APDGLNELRHKFLSYRS 78 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~i~nvs~~y~~ 78 (382)
.+..++..+......+.....+.+|+.++.+.++.... +..+.|+++||+++|+.
T Consensus 1150 ~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~ 1229 (1490)
T TIGR01271 1150 NILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE 1229 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC
Confidence 45566777777777888888999999998876543110 11246999999999976
Q ss_pred CCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccc
Q 016817 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158 (382)
Q Consensus 79 ~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig 158 (382)
+..+ +|+|+||+|++||.+||+|+||||||||+++|.|+++++|+|.+||.++.+.+. ..+|+ +++
T Consensus 1230 ~~~~----vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~---------~~lR~-~is 1295 (1490)
T TIGR01271 1230 AGRA----VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTL---------QTWRK-AFG 1295 (1490)
T ss_pred CCcc----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCH---------HHHHh-ceE
Confidence 4433 699999999999999999999999999999999998889999999998764432 23665 899
Q ss_pred eeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeee
Q 016817 159 FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMV 227 (382)
Q Consensus 159 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAra 227 (382)
||+|+|.+|+ .|+++|+... ....++++.++++.+++.+.+. +.|. .||||||||++||||
T Consensus 1296 ~IpQdp~LF~-GTIR~NLdp~------~~~tdeei~~aL~~~~L~~~i~-~lp~GLdt~v~e~G~nLSgGQrQrL~LARA 1367 (1490)
T TIGR01271 1296 VIPQKVFIFS-GTFRKNLDPY------EQWSDEEIWKVAEEVGLKSVIE-QFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367 (1490)
T ss_pred EEeCCCccCc-cCHHHHhCcc------cCCCHHHHHHHHHHCCCHHHHH-hCccccccccccCCCcCCHHHHHHHHHHHH
Confidence 9999999998 7999999521 2234567888899888876544 3332 599999999999999
Q ss_pred ehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 228 VSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 228 L~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|+++|+|||||| +||+.+...|++.|++.. .++|||+||| +++++.. +|+|++|++ +..+.+.+++
T Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~----~~~TvI~IaH--Rl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF----SNCTVILSEH--RVEALLE-CQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEec--CHHHHHh-CCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999 999999999999999863 5799999999 6666775 778888876 5556665555
No 283
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.4e-39 Score=291.77 Aligned_cols=175 Identities=18% Similarity=0.096 Sum_probs=148.1
Q ss_pred hhHHHHHhhhcccC----CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCc
Q 016817 66 LNELRHKFLSYRSG----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNS 138 (382)
Q Consensus 66 ~i~i~nvs~~y~~~----~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~ 138 (382)
.++++|++++|+.. ..+ +|+++||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~----~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~- 77 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQ----LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK- 77 (194)
T ss_pred EEEEEeeEEEEecCCCccccc----ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch-
Confidence 46789999999752 122 699999999999999999999999999999999999 8 89999999986531
Q ss_pred ccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
. .+++ .++|+||++.+|+.+|+.+|+.+... . .+|||||
T Consensus 78 --------~---~~~~-~i~~~~q~~~~~~~~t~~~~i~~~~~-~----------------------------~~LS~G~ 116 (194)
T cd03213 78 --------R---SFRK-IIGYVPQDDILHPTLTVRETLMFAAK-L----------------------------RGLSGGE 116 (194)
T ss_pred --------H---hhhh-eEEEccCcccCCCCCcHHHHHHHHHH-h----------------------------ccCCHHH
Confidence 0 1343 79999999999988999999854210 0 0899999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||++|||||+.+|++||||| +||+.++..+.+.|+++ .++|+|+|++|||++. ++..+||+++++++
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~-~~~~~~d~v~~l~~ 187 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL---ADTGRTIICSIHQPSS-EIFELFDKLLLLSQ 187 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEEecCchH-HHHHhcCEEEEEeC
Confidence 999999999999999999999 99999999999999998 3358999999996541 26778999988875
No 284
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=322.69 Aligned_cols=207 Identities=17% Similarity=0.072 Sum_probs=175.0
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..+.++++|++|+|+.-. ||++|||++.+||++||+|.||||||||+|+|+|.++ ++|+|.++|+.+.-.+
T Consensus 5 ~~~ll~~~~i~K~FggV~------AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~s-- 76 (500)
T COG1129 5 TPPLLELRGISKSFGGVK------ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSS-- 76 (500)
T ss_pred ccceeeeecceEEcCCce------eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCC--
Confidence 345789999999997544 7999999999999999999999999999999999999 8999999999654221
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cC----ccccccccccCccccccccccccccCCCcc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EG----VHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~----~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
....+...|++|+|+..|+|++||.||+........ .+ ....+++.++++.+++.... +.++.+||+
T Consensus 77 -------p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~-~~~v~~Lsi 148 (500)
T COG1129 77 -------PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP-DTLVGDLSI 148 (500)
T ss_pred -------HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCCh-hhhhhhCCH
Confidence 111233489999999999999999999964432211 11 11234566788888885444 489999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||.|+|||||..++++||||| +|+......+++.++++ +++|.+||+||| +++++.++||+|.+|++
T Consensus 149 aqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~L---k~~Gv~ii~ISH--rl~Ei~~i~DritVlRD 220 (500)
T COG1129 149 AQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL---KAQGVAIIYISH--RLDEVFEIADRITVLRD 220 (500)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEcC--cHHHHHHhcCEEEEEeC
Confidence 99999999999999999999999 99999999999999999 678999999999 78889999999999988
No 285
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=313.48 Aligned_cols=215 Identities=16% Similarity=0.153 Sum_probs=165.9
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecCCC
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i~~ 137 (382)
+.+|+++|++++|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 43 ~~~l~i~nl~~~~~~~~------iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDH------ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CceEEEEEEEEEeCCee------eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45799999999996432 6999999999999999999999999999999999984 59999999987642
Q ss_pred cccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc----------Cc----cccccccccCcccccc
Q 016817 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE----------GV----HHNQRCLRSDDCALMK 203 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~----------~~----~~~~~~~~~l~~~~L~ 203 (382)
.. .....+|+ .++|+||++.+|+ .|+.+|+.+....... .. ..++.+.++++.+++.
T Consensus 117 ~~-------~~~~~~~~-~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 187 (305)
T PRK14264 117 DG-------VNLVELRK-RVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW 187 (305)
T ss_pred cc-------ccHHHHhh-ceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc
Confidence 11 01122444 8999999998888 5999999764321100 00 0123455667777764
Q ss_pred ----ccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCC
Q 016817 204 ----NDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLS 276 (382)
Q Consensus 204 ----~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~ 276 (382)
+.. ++++.+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++. + +.|||+||||++.
T Consensus 188 ~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~---~-~~tiiivtH~~~~- 261 (305)
T PRK14264 188 DEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA---E-EYTVVVVTHNMQQ- 261 (305)
T ss_pred hhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---c-CCEEEEEEcCHHH-
Confidence 233 48899999999999999999999999999999 999999999999999983 2 4899999996655
Q ss_pred hhhhhhhhh-hhhhh---ccccccccee
Q 016817 277 TEERLDARL-KICEY---LGVSEISGVY 300 (382)
Q Consensus 277 ~~~~~~d~v-~ll~~---~~~~~~~~v~ 300 (382)
+..+||++ +++++ +..+++++++
T Consensus 262 -i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 262 -AARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred -HHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 88889986 56665 3344444443
No 286
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.5e-39 Score=338.49 Aligned_cols=236 Identities=15% Similarity=0.064 Sum_probs=184.6
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhhh---hc---CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCce
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA---LI---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G 98 (382)
+..|+.+++.....+..+..+.+|+.++++.++.+ .. +..+.++++||+|+|+++. + +|+|+||+|++|
T Consensus 275 ~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~----~l~~i~~~i~~G 349 (547)
T PRK10522 275 LRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDNG-F----SVGPINLTIKRG 349 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCCCC-e----EEecceEEEcCC
Confidence 55799999999999999999999999987543211 10 1123689999999997432 2 599999999999
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
++++|+||||||||||+++|+|+++ ++|+|.+||+++.+.. ...+|+ +++|++|++.+|+ .|+++|-
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---------~~~~~~-~i~~v~q~~~lf~-~ti~~n~- 417 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ---------PEDYRK-LFSAVFTDFHLFD-QLLGPEG- 417 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC---------HHHHhh-heEEEecChhHHH-Hhhcccc-
Confidence 9999999999999999999999999 8999999999875432 122554 8999999999987 6777761
Q ss_pred HHHhhhhcCccccccccccCcccccccccc--cc--ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhh
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAE--ID--DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATK 250 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~--~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~ 250 (382)
....++.+.++++.+++.+... +. ....||||||||++|||||+++|++||||| +||++++..+.
T Consensus 418 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~ 489 (547)
T PRK10522 418 --------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489 (547)
T ss_pred --------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 1122344556677777764432 01 135799999999999999999999999999 99999999999
Q ss_pred hhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 251 RLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 251 ~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.+.+.. ++.++|+|+|||++ +.+ ..+|+++++++
T Consensus 490 ~~l~~~~--~~~~~tvi~itH~~--~~~-~~~d~i~~l~~ 524 (547)
T PRK10522 490 QVLLPLL--QEMGKTIFAISHDD--HYF-IHADRLLEMRN 524 (547)
T ss_pred HHHHHHH--HhCCCEEEEEEech--HHH-HhCCEEEEEEC
Confidence 9887652 23489999999954 334 46888888875
No 287
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-39 Score=306.10 Aligned_cols=209 Identities=16% Similarity=0.071 Sum_probs=163.1
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc------ccceeeeEeecC
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSS 135 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~------~~G~I~i~G~~i 135 (382)
+..++|+++|++++|+.. . +|+|+||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|.++
T Consensus 12 ~~~~~l~~~~l~~~~~~~--~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGGY--Q----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred CCCceEEEEEEEEEECCe--e----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence 456789999999999643 2 5999999999999999999999999999999999985 489999999765
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc--cccccccccCcccccc----cccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV--HHNQRCLRSDDCALMK----NDAEID 209 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~--~~~~~~~~~l~~~~L~----~~~~~~ 209 (382)
..... ......+++ .++|++|++.+|+. |+.+|+........... ..++.+.++++.+++. +.. ++
T Consensus 86 ~~~~~-----~~~~~~~~~-~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~ 157 (265)
T PRK14252 86 NILSP-----EVDPIEVRM-RISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRL-GD 157 (265)
T ss_pred ccccc-----ccCHHHHhc-cEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHH-hC
Confidence 31100 001112343 79999999999984 99999965421111000 1123445566666653 233 47
Q ss_pred ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
.+.+|||||+|||+|||||+.+|++||||| +||+.++..+.+.|+++. .+.|||+||||++. +..+||+++
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~tiiivth~~~~--~~~~~d~i~ 231 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK----NKVTILIVTHNMQQ--AARVSDYTA 231 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----hCCEEEEEecCHHH--HHHhCCEEE
Confidence 889999999999999999999999999999 999999999999999983 36899999995554 888999999
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
++++
T Consensus 232 ~l~~ 235 (265)
T PRK14252 232 YMYM 235 (265)
T ss_pred EEEC
Confidence 9986
No 288
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-39 Score=300.93 Aligned_cols=195 Identities=14% Similarity=0.152 Sum_probs=152.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~-~----~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~------ 69 (236)
T cd03253 1 IEFENVTFAYDPGR-P----VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT------ 69 (236)
T ss_pred CEEEEEEEEeCCCC-c----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC------
Confidence 35788999996322 1 5999999999999999999999999999999999999 8999999998654221
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccC---------ccc--cccccccccccCCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSD---------DCA--LMKNDAEIDDLKSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l---------~~~--~L~~~~~~~~~~~L 214 (382)
...+++ .++|++|++.+|+ .|+.+|+.+... .. ....+.+++ +.+ ++..... +.+.+|
T Consensus 70 ---~~~~~~-~i~~~~q~~~~~~-~tv~~nl~~~~~----~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~L 138 (236)
T cd03253 70 ---LDSLRR-AIGVVPQDTVLFN-DTIGYNIRYGRP----DA-TDEEVIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKL 138 (236)
T ss_pred ---HHHHHh-hEEEECCCChhhc-chHHHHHhhcCC----CC-CHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcC
Confidence 112343 7999999998886 799999964321 00 111111111 222 3333333 678899
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.+.|.++ .+ |.|||++||+++. +.. ||+++++++
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~---~~-~~tiii~sh~~~~--~~~-~d~~~~l~~ 210 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV---SK-GRTTIVIAHRLST--IVN-ADKIIVLKD 210 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh---cC-CCEEEEEcCCHHH--HHh-CCEEEEEEC
Confidence 9999999999999999999999999 99999999999999998 34 8999999996655 754 889988876
No 289
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.8e-39 Score=291.54 Aligned_cols=184 Identities=13% Similarity=0.099 Sum_probs=151.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.. . ++ ++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~--~----l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----- 68 (195)
T PRK13541 1 MLSLHQLQFNIEQK--N----LF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----- 68 (195)
T ss_pred CeEEEEeeEEECCc--E----EE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-----
Confidence 46789999999542 1 35 4999999999999999999999999999999999 8999999998653210
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
+ ..++|++|++.+++..|+.+|+.+..... ...+.+.++++.+++.+... +++.+||||||||++|
T Consensus 69 --------~-~~~~~~~~~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rl~l 134 (195)
T PRK13541 69 --------K-PYCTYIGHNLGLKLEMTVFENLKFWSEIY----NSAETLYAAIHYFKLHDLLD-EKCYSLSSGMQKIVAI 134 (195)
T ss_pred --------h-hhEEeccCCcCCCccCCHHHHHHHHHHhc----ccHHHHHHHHHHcCCHhhhc-cChhhCCHHHHHHHHH
Confidence 1 25899999887777799999997543111 12345667788889886554 8999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~ 280 (382)
|||++.+|++||||| +||+.++..+.+.|++. .+.|.|+|++|||++. +..
T Consensus 135 a~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~--i~~ 188 (195)
T PRK13541 135 ARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMK---ANSGGIVLLSSHLESS--IKS 188 (195)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCccc--cch
Confidence 999999999999999 99999999999999865 3468999999997665 654
No 290
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-38 Score=290.54 Aligned_cols=184 Identities=12% Similarity=0.012 Sum_probs=150.0
Q ss_pred hhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc----ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~----~~G~I~i~G~~i~~~~ 139 (382)
.+.++||+|.|+.+ +.. +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIP----ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccCCCCce----eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 46789999999864 222 6999999999999999999999999999999999986 4999999998654211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcccee
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
...+ +.++|++|++.+|+.+|+.+|+.+... . . . ++++.+|||||+
T Consensus 79 ----------~~~~-~~i~~~~q~~~~~~~~tv~~~l~~~~~-~----------~-----------~-~~~~~~LS~Ge~ 124 (202)
T cd03233 79 ----------EKYP-GEIIYVSEEDVHFPTLTVRETLDFALR-C----------K-----------G-NEFVRGISGGER 124 (202)
T ss_pred ----------hhhc-ceEEEEecccccCCCCcHHHHHhhhhh-h----------c-----------c-ccchhhCCHHHH
Confidence 1133 379999999988988999999964310 0 0 2 378899999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||++|||||+.+|++||||| +||+.++..+.+.|+++. ++.+.|+|+++|+ ..+++.++||++++|++
T Consensus 125 qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~--~~~~~t~ii~~~h-~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA--DVLKTTTFVSLYQ-ASDEIYDLFDKVLVLYE 195 (202)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhCCCEEEEEEcC-CHHHHHHhCCeEEEEEC
Confidence 99999999999999999999 999999999999999983 3336676666552 22347788999998876
No 291
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.8e-38 Score=277.95 Aligned_cols=224 Identities=14% Similarity=0.070 Sum_probs=181.7
Q ss_pred chhHHHHHhhhcccCCee---eecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccc
Q 016817 65 GLNELRHKFLSYRSGDFW---IPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~---v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~ 140 (382)
..++++|++|+|.....- -+..+++.|||++++|+.+||+|.||||||||.|+|+|.++ ++|+|.|||+.+.-
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~--- 79 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF--- 79 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc---
Confidence 478999999988643211 01237999999999999999999999999999999999999 89999999986521
Q ss_pred ceeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccCCCcc
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
.+. .+|.+.|-|+||||+ +.|.+.+.+.++....... ......+++.+-++++||-+.-.+-+|+.||-
T Consensus 80 ------~Dy-~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~ 152 (267)
T COG4167 80 ------GDY-SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAP 152 (267)
T ss_pred ------cch-HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCc
Confidence 111 256678999999974 5677777666654332111 11223456777889999865545699999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--- 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--- 290 (382)
|||||||+||||..+|+|+|.|| +||...+.++.+++.++ +.+.|.+-|+|+.++.+ +..++|.|++|++
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeL--Qek~GiSyiYV~QhlG~--iKHi~D~viVM~EG~v 228 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLEL--QEKQGISYIYVTQHIGM--IKHISDQVLVMHEGEV 228 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHH--HHHhCceEEEEechhhH--hhhhcccEEEEecCce
Confidence 99999999999999999999999 99999999999999999 46789999999997777 9999999999987
Q ss_pred cccccccceeeE
Q 016817 291 LGVSEISGVYDI 302 (382)
Q Consensus 291 ~~~~~~~~v~~~ 302 (382)
+..|++.++|..
T Consensus 229 vE~G~t~~v~a~ 240 (267)
T COG4167 229 VERGSTADVLAS 240 (267)
T ss_pred eecCChhhhhcC
Confidence 788888888854
No 292
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-38 Score=287.85 Aligned_cols=174 Identities=14% Similarity=0.072 Sum_probs=145.8
Q ss_pred hhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCccc
Q 016817 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 66 ~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~~ 140 (382)
.++++|+++.|+++ +.+ +|+++||++++|++++|+||||||||||+++|+|++ + ++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQ----LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceE----eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----
Confidence 57889999999642 122 599999999999999999999999999999999985 3 6999999998542
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+++ .++|++|++.+|+.+|+.+|+.+... . + +|||||+|
T Consensus 75 ---------~~~~~-~i~~~~q~~~~~~~~tv~~~l~~~~~-------------------------~-~---~LSgGe~q 115 (192)
T cd03232 75 ---------KNFQR-STGYVEQQDVHSPNLTVREALRFSAL-------------------------L-R---GLSVEQRK 115 (192)
T ss_pred ---------HHhhh-ceEEecccCccccCCcHHHHHHHHHH-------------------------H-h---cCCHHHhH
Confidence 11333 79999999988888999999964210 0 0 89999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+.+|++||||| +||+.++..+++.|+++ ++.|.|+|++|||++. ++..+||++++|++
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiiivtH~~~~-~~~~~~d~i~~l~~ 184 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL---ADSGQAILCTIHQPSA-SIFEKFDRLLLLKR 184 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHH---HHcCCEEEEEEcCChH-HHHhhCCEEEEEcC
Confidence 9999999999999999999 99999999999999997 3358999999996541 25678899888853
No 293
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.5e-38 Score=327.71 Aligned_cols=200 Identities=13% Similarity=0.063 Sum_probs=163.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|+++ . +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....
T Consensus 256 ~~l~~~~l~~-----~------~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~---- 320 (501)
T PRK10762 256 VRLKVDNLSG-----P------GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS---- 320 (501)
T ss_pred cEEEEeCccc-----C------CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC----
Confidence 4788888874 1 4999999999999999999999999999999999998 8999999998764221
Q ss_pred ehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhh-hhc--C----ccccccccccCcccccc-ccccccccC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSW-MSE--G----VHHNQRCLRSDDCALMK-NDAEIDDLK 212 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~-~~~--~----~~~~~~~~~~l~~~~L~-~~~~~~~~~ 212 (382)
.. ...|+ .+||++|++ .+++.+|+.+|+.+.... ... + ....+++.++++.+++. +.. ++++.
T Consensus 321 --~~--~~~~~-~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~ 394 (501)
T PRK10762 321 --PQ--DGLAN-GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM-EQAIG 394 (501)
T ss_pred --HH--HHHHC-CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc-cCchh
Confidence 01 11333 799999996 578889999999753211 100 0 01124567789999995 444 59999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ .++|.|||+||||++. +..+||++++++
T Consensus 395 ~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~g~tviivtHd~~~--~~~~~d~v~~l~ 469 (501)
T PRK10762 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF---KAEGLSIILVSSEMPE--VLGMSDRILVMH 469 (501)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHH---HHCCCEEEEEcCCHHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 99999999999999998 3358999999996665 899999999997
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 470 ~ 470 (501)
T PRK10762 470 E 470 (501)
T ss_pred C
Confidence 6
No 294
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.8e-38 Score=291.07 Aligned_cols=173 Identities=17% Similarity=0.091 Sum_probs=143.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCccccee
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++|++++|++. . +|+|+||++++||+++|+||||||||||+++|+|+. + ++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~--~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~--- 71 (200)
T cd03217 1 LEIKDLHVSVGGK--E----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP--- 71 (200)
T ss_pred CeEEEEEEEeCCE--E----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCH---
Confidence 3578999999642 2 599999999999999999999999999999999994 5 79999999987653221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.. ..+ ..++|+||++.+++..++.+++ . +.+.+|||||+||++
T Consensus 72 ---~~--~~~-~~i~~v~q~~~~~~~~~~~~~l------------------------------~-~~~~~LS~G~~qrv~ 114 (200)
T cd03217 72 ---EE--RAR-LGIFLAFQYPPEIPGVKNADFL------------------------------R-YVNEGFSGGEKKRNE 114 (200)
T ss_pred ---HH--Hhh-CcEEEeecChhhccCccHHHHH------------------------------h-hccccCCHHHHHHHH
Confidence 11 112 2699999998888766665544 1 334689999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh-hhhhhhhhhh
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER-LDARLKICEY 290 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~-~~d~v~ll~~ 290 (382)
|||||+.+|++||||| +||+.++..+.+.|+++ .+.+.|||++||+++. +.. ++|+++++++
T Consensus 115 laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~---~~~~~tiii~sh~~~~--~~~~~~d~i~~l~~ 180 (200)
T cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL---REEGKSVLIITHYQRL--LDYIKPDRVHVLYD 180 (200)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhhCCEEEEEEC
Confidence 9999999999999999 99999999999999998 3358999999996665 777 6999998876
No 295
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=6.7e-39 Score=289.19 Aligned_cols=169 Identities=15% Similarity=0.137 Sum_probs=140.6
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
+++|++++|+.. . +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.....
T Consensus 1 ~~~~l~~~~~~~--~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~------ 68 (180)
T cd03214 1 EVENLSVGYGGR--T----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP------ 68 (180)
T ss_pred CeeEEEEEECCe--e----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCH------
Confidence 467899999642 2 5999999999999999999999999999999999998 89999999987642211
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceee
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAM 226 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAr 226 (382)
. .+++ .++|+|| +++.+++.+... +.+.+||||||||++|||
T Consensus 69 ~---~~~~-~i~~~~q---------------------------------~l~~~gl~~~~~-~~~~~LS~G~~qrl~lar 110 (180)
T cd03214 69 K---ELAR-KIAYVPQ---------------------------------ALELLGLAHLAD-RPFNELSGGERQRVLLAR 110 (180)
T ss_pred H---HHHH-HHhHHHH---------------------------------HHHHcCCHhHhc-CCcccCCHHHHHHHHHHH
Confidence 1 1333 6889888 334456665544 789999999999999999
Q ss_pred eehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 227 VVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 227 aL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.+|++||||| +||+.++..+.+.|+++. ++.+.|+|++||+++. +.++||+++++++
T Consensus 111 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--~~~~~tiii~sh~~~~--~~~~~d~~~~l~~ 173 (180)
T cd03214 111 ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA--RERGKTVVMVLHDLNL--AARYADRVILLKD 173 (180)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999 999999999999999983 3237899999996555 8888999998875
No 296
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-38 Score=291.71 Aligned_cols=183 Identities=16% Similarity=0.157 Sum_probs=144.3
Q ss_pred hHHHHHhhhcccCC---eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 67 NELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 67 i~i~nvs~~y~~~~---~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
++++||+++|+++. .. +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~----il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSF----TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccc----eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----------
Confidence 45789999996542 12 5999999999999999999999999999999999999 899999987
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccc-----------cccccccccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL-----------MKNDAEIDDL 211 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~ 211 (382)
.++|++|++.+|+ .|+.+|+.+... . ..+...++++.++ +..... +.+
T Consensus 67 -------------~i~~~~q~~~l~~-~t~~enl~~~~~-----~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~ 125 (204)
T cd03250 67 -------------SIAYVSQEPWIQN-GTIRENILFGKP-----F-DEERYEKVIKACALEPDLEILPDGDLTEIG-EKG 125 (204)
T ss_pred -------------EEEEEecCchhcc-CcHHHHhccCCC-----c-CHHHHHHHHHHcCcHHHHHhccCcccceec-CCC
Confidence 3789999999886 799999964311 0 0111222222222 222233 668
Q ss_pred CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhh-hccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKR-LFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~-~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
.+||||||||++|||||+.+|+++|||| +||+.++..+.+ ++++. .+.|.|||++||++.. +.. +|++++
T Consensus 126 ~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~---~~~~~tvi~~sh~~~~--~~~-~d~i~~ 199 (204)
T cd03250 126 INLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGL---LLNNKTRILVTHQLQL--LPH-ADQIVV 199 (204)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh---ccCCCEEEEEeCCHHH--Hhh-CCEEEE
Confidence 8999999999999999999999999999 999999999988 56665 2348999999996655 776 888887
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 200 l~~ 202 (204)
T cd03250 200 LDN 202 (204)
T ss_pred EeC
Confidence 753
No 297
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-38 Score=363.51 Aligned_cols=215 Identities=13% Similarity=0.023 Sum_probs=177.2
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.+.+|+++|++|+|+++.+. +|+|+||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++...
T Consensus 1934 ~~~~L~v~nLsK~Y~~~~~~----aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~--- 2006 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGTSSP----AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--- 2006 (2272)
T ss_pred CCceEEEEEEEEEECCCCce----EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch---
Confidence 45689999999999753222 6999999999999999999999999999999999999 899999999976321
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
....|+ .|||++|++.+++.+|++|++.+.+...+.. ...++.+.++++.++|.+.. ++++.+|||||||
T Consensus 2007 -------~~~~r~-~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-dk~~~~LSGGqKq 2077 (2272)
T TIGR01257 2007 -------ISDVHQ-NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-DRLAGTYSGGNKR 2077 (2272)
T ss_pred -------HHHHhh-hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHH
Confidence 112343 7999999999999999999998654332211 11124466789999998765 4999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+||+||+.+|+||+||| +|||.+++.+++.|+++ +++|+|||++||+++. +..+||++++|++ +..+
T Consensus 2078 RLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l---~~~g~TIILtTH~mee--~e~lcDrV~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI---IREGRAVVLTSHSMEE--CEALCTRLAIMVKGAFQCLG 2152 (2272)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999 99999999999999998 3358999999995554 9999999999986 3444
Q ss_pred cccc
Q 016817 295 EISG 298 (382)
Q Consensus 295 ~~~~ 298 (382)
++.+
T Consensus 2153 s~q~ 2156 (2272)
T TIGR01257 2153 TIQH 2156 (2272)
T ss_pred CHHH
Confidence 4433
No 298
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.3e-38 Score=293.67 Aligned_cols=198 Identities=16% Similarity=0.149 Sum_probs=150.0
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehh
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
.+.|++++|+.+. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++......
T Consensus 2 ~~~~~~~~~~~~~-~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~----- 71 (218)
T cd03290 2 QVTNGYFSWGSGL-A----TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE----- 71 (218)
T ss_pred eeeeeEEecCCCC-c----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccccc-----
Confidence 4567888886442 2 6999999999999999999999999999999999998 899999999865432110
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccc----------cccccCCCcc
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDA----------EIDDLKSSPK 216 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSG 216 (382)
......| +.++|++|++.+|+ .|+.+|+..... . ..+...++++.+++.+.+ .++++.+|||
T Consensus 72 ~~~~~~~-~~i~~~~q~~~~~~-~t~~~nl~~~~~-----~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~ 143 (218)
T cd03290 72 ATRSRNR-YSVAYAAQKPWLLN-ATVEENITFGSP-----F-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSG 143 (218)
T ss_pred ccchhhc-ceEEEEcCCCcccc-ccHHHHHhhcCc-----C-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCH
Confidence 0011123 37999999998885 799999964321 0 111223344444443211 1267899999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhh--hccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKR--LFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~--~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||||+|||||+.+|++||||| +||+.++..+++ +++.+ ++.|.|+|++||+++. +. .||++++++
T Consensus 144 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~---~~~~~tii~~sH~~~~--~~-~~d~i~~l~ 215 (218)
T cd03290 144 GQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL---QDDKRTLVLVTHKLQY--LP-HADWIIAMK 215 (218)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH---hcCCCEEEEEeCChHH--Hh-hCCEEEEec
Confidence 99999999999999999999999 999999999998 56655 3458999999997665 65 588887775
No 299
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.7e-38 Score=338.42 Aligned_cols=230 Identities=13% Similarity=0.052 Sum_probs=185.5
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------------------------------cCcCchhHHHHH
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------------------------------IAPDGLNELRHK 72 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~i~i~nv 72 (382)
++..|+..++....+++.+.++.+|+.++++.++... ....++|+++||
T Consensus 378 ~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv 457 (659)
T TIGR00954 378 KAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENI 457 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEee
Confidence 4588999999999999999999999999998643200 012346899999
Q ss_pred hhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhh
Q 016817 73 FLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNV 151 (382)
Q Consensus 73 s~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~ 151 (382)
++.|+++. . +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+++.
T Consensus 458 ~~~~~~~~-~----il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~------------------ 514 (659)
T TIGR00954 458 PLVTPNGD-V----LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK------------------ 514 (659)
T ss_pred EEECCCCC-e----eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC------------------
Confidence 99996443 2 5999999999999999999999999999999999999 8999987542
Q ss_pred HhhhccceeeEeCCCCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccc---------cCCCccceee
Q 016817 152 MRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDD---------LKSSPKYVLR 220 (382)
Q Consensus 152 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~~LSGGqkQ 220 (382)
+.++|++|++.+|+. |+++|+.+...... .....++++.++++.+++.+.+. ++ +.+|||||||
T Consensus 515 ---~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~-~~~g~~~~~~~~~~LSgGqkQ 589 (659)
T TIGR00954 515 ---GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILE-REGGWSAVQDWMDVLSGGEKQ 589 (659)
T ss_pred ---CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHh-hcCCcccccccccCCCHHHHH
Confidence 379999999998885 99999965321100 01122345677888888876544 43 3689999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|||||+++|++||||| +||+.++..+.+.+++ .|.|+|+|||+++. + +.||+++++++
T Consensus 590 Rl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~------~~~tvI~isH~~~~--~-~~~d~il~l~~ 653 (659)
T TIGR00954 590 RIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE------FGITLFSVSHRKSL--W-KYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH------cCCEEEEEeCchHH--H-HhCCEEEEEeC
Confidence 9999999999999999999 9999999999998876 37899999996554 5 56888888864
No 300
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.2e-38 Score=284.12 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=141.7
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+....+ +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~------- 69 (178)
T cd03247 1 LSINNVSFSYPEQEQQ----VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL------- 69 (178)
T ss_pred CEEEEEEEEeCCCCcc----ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-------
Confidence 3578899999654212 5999999999999999999999999999999999999 899999999854210
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
...+++ .++|++|++.+|+ .|+++|+ +.+|||||+||++||
T Consensus 70 ---~~~~~~-~i~~~~q~~~~~~-~tv~~~i----------------------------------~~~LS~G~~qrv~la 110 (178)
T cd03247 70 ---EKALSS-LISVLNQRPYLFD-TTLRNNL----------------------------------GRRFSGGERQRLALA 110 (178)
T ss_pred ---HHHHHh-hEEEEccCCeeec-ccHHHhh----------------------------------cccCCHHHHHHHHHH
Confidence 112343 7999999988876 6877765 678999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+++.|+++ . ++.|||++|||++. +. .+|+++++++
T Consensus 111 ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~--~~-~~d~~~~l~~ 171 (178)
T cd03247 111 RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---L-KDKTLIWITHHLTG--IE-HMDKILFLEN 171 (178)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---c-CCCEEEEEecCHHH--HH-hCCEEEEEEC
Confidence 99999999999999 99999999999999997 3 47899999997665 65 5888888865
No 301
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-38 Score=283.20 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=139.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|+++... +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~~~----~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~------ 70 (171)
T cd03228 1 IEFKNVSFSYPGRPKP----VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD------ 70 (171)
T ss_pred CEEEEEEEEcCCCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC------
Confidence 3578899999754212 6999999999999999999999999999999999999 8999999998653221
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
...+++ .++|+||++.+|+ .|+.+|+ |||||||||+||
T Consensus 71 ---~~~~~~-~i~~~~~~~~~~~-~t~~e~l-------------------------------------LS~G~~~rl~la 108 (171)
T cd03228 71 ---LESLRK-NIAYVPQDPFLFS-GTIRENI-------------------------------------LSGGQRQRIAIA 108 (171)
T ss_pred ---HHHHHh-hEEEEcCCchhcc-chHHHHh-------------------------------------hCHHHHHHHHHH
Confidence 111333 7999999988776 5777665 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ . +++|+|++|||++. +.. ||+++++++
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~-~~~tii~~sh~~~~--~~~-~d~~~~l~~ 169 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRAL---A-KGKTVIVIAHRLST--IRD-ADRIIVLDD 169 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---c-CCCEEEEEecCHHH--HHh-CCEEEEEcC
Confidence 99999999999999 99999999999999998 3 36899999997665 766 888887753
No 302
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=328.40 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=159.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++|++++|++. + +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.
T Consensus 1 ml~i~~ls~~~~~~--~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------- 63 (530)
T PRK15064 1 MLSTANITMQFGAK--P----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------- 63 (530)
T ss_pred CEEEEEEEEEeCCc--E----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------
Confidence 46789999999643 2 5999999999999999999999999999999999998 8999999874
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-----------hc----------------------Cccccc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-----------SE----------------------GVHHNQ 191 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-----------~~----------------------~~~~~~ 191 (382)
..+||++|++.+++.+|+.+|+....... .. +...++
T Consensus 64 ----------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (530)
T PRK15064 64 ----------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEA 133 (530)
T ss_pred ----------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHH
Confidence 26899999998888899999986532100 00 001123
Q ss_pred cccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEE
Q 016817 192 RCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILI 268 (382)
Q Consensus 192 ~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIi 268 (382)
++.++++.+|+.+...++++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|++ .|.|||+
T Consensus 134 ~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tiii 207 (530)
T PRK15064 134 RAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE------RNSTMII 207 (530)
T ss_pred HHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh------CCCeEEE
Confidence 466788899997544447889999999999999999999999999999 9999999999999864 4789999
Q ss_pred EecCCCCChhhhhhhhhhhhhh
Q 016817 269 LTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 269 iTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||++. +..+||+++++++
T Consensus 208 vsHd~~~--~~~~~d~i~~l~~ 227 (530)
T PRK15064 208 ISHDRHF--LNSVCTHMADLDY 227 (530)
T ss_pred EeCCHHH--HHhhcceEEEEeC
Confidence 9997666 8899999999986
No 303
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=9.8e-38 Score=332.19 Aligned_cols=219 Identities=17% Similarity=0.123 Sum_probs=175.2
Q ss_pred chhHHHHHhhhcccCC--eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 65 GLNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~--~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.+++++|++++|+.+. .. +|+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~-- 76 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVE----VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLD-- 76 (648)
T ss_pred cEEEEeeEEEEeCCCCCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCC--
Confidence 4789999999996422 22 5999999999999999999999999999999999999 8999999999765322
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+...++++.++|+||++.+|++.|+.||+.+.....+.. ...++++.++++.+|+.+.. ++.+.+|||||+|
T Consensus 77 ----~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-~~~~~~LS~Gq~q 151 (648)
T PRK10535 77 ----ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRV-EYQPSQLSGGQQQ 151 (648)
T ss_pred ----HHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-cCCcccCCHHHHH
Confidence 22222233348999999999999899999997643211111 11234567788899998665 4999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
|++|||||+.+|++||||| +||+.+++.+.++|+++ +++|.|+|++||+++. +. .||+++++++ +..+
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l---~~~g~tilivsH~~~~--~~-~~d~i~~l~~G~i~~~g 225 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL---RDRGHTVIIVTHDPQV--AA-QAERVIEIRDGEIVRNP 225 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEECCCHHH--HH-hCCEEEEEECCEEEeec
Confidence 9999999999999999999 99999999999999998 3358999999997665 65 5888888887 4445
Q ss_pred ccccee
Q 016817 295 EISGVY 300 (382)
Q Consensus 295 ~~~~v~ 300 (382)
++.+..
T Consensus 226 ~~~~~~ 231 (648)
T PRK10535 226 PAQEKV 231 (648)
T ss_pred Cccccc
Confidence 544443
No 304
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5.4e-38 Score=280.02 Aligned_cols=158 Identities=19% Similarity=0.103 Sum_probs=137.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|+++|++++|+.+. . +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~~-~----~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------ 63 (166)
T cd03223 1 IELENLSLATPDGR-V----LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------ 63 (166)
T ss_pred CEEEEEEEEcCCCC-e----eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------
Confidence 35789999996432 2 5999999999999999999999999999999999999 8999999764
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
+.++|++|++.+++ .|+.+|+.+. .+.+||||||||++||
T Consensus 64 ---------~~i~~~~q~~~~~~-~tv~~nl~~~------------------------------~~~~LS~G~~~rv~la 103 (166)
T cd03223 64 ---------EDLLFLPQRPYLPL-GTLREQLIYP------------------------------WDDVLSGGEQQRLAFA 103 (166)
T ss_pred ---------ceEEEECCCCcccc-ccHHHHhhcc------------------------------CCCCCCHHHHHHHHHH
Confidence 37999999987664 7999988420 3689999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ +.|+|++|||++. . .+||+++++++
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~~~--~-~~~d~i~~l~~ 162 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL------GITVISVGHRPSL--W-KFHDRVLDLDG 162 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh------CCEEEEEeCChhH--H-hhCCEEEEEcC
Confidence 99999999999999 99999999999999875 4899999997654 4 48899888865
No 305
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.9e-38 Score=359.53 Aligned_cols=241 Identities=13% Similarity=0.091 Sum_probs=183.1
Q ss_pred hhhhhccCCCCccccchhHHHHHHhhhhhhc-------CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeee
Q 016817 31 ECVKLKLDLPNVSTLTPRLRVLREMERLALI-------APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILL 103 (382)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~al 103 (382)
.+......+..+..+.+|+.++++.++.... +....|+++||+|+|+..... ++|+|+||+|++||++||
T Consensus 340 ~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~---~vL~~isl~i~~Ge~vaI 416 (1466)
T PTZ00265 340 IILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDV---EIYKDLNFTLTEGKTYAF 416 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCC---ceeccceEEEcCCCEEEE
Confidence 3444556677788899999999876542100 111368999999999753211 169999999999999999
Q ss_pred ecccCCCchhHHHHHHHhhc-ccceeeeE-eecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHh
Q 016817 104 MGFSGSGKSSLVNLMYSVLS-RSGLVLFA-QTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSS 181 (382)
Q Consensus 104 vGpnGsGKSTLl~~i~Gl~~-~~G~I~i~-G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 181 (382)
+||||||||||+++|+|+++ ++|+|+++ |.++.+.. ...+|+ +||||+|++.+|+ .|+++|+.+...
T Consensus 417 vG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~---------~~~lr~-~Ig~V~Q~~~LF~-~TI~eNI~~g~~ 485 (1466)
T PTZ00265 417 VGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDIN---------LKWWRS-KIGVVSQDPLLFS-NSIKNNIKYSLY 485 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCC---------HHHHHH-hccEecccccchh-ccHHHHHHhcCC
Confidence 99999999999999999999 89999995 57654322 122555 8999999999998 699999976421
Q ss_pred hh----------hc------------------------------------------CccccccccccCcccccccccc--
Q 016817 182 WM----------SE------------------------------------------GVHHNQRCLRSDDCALMKNDAE-- 207 (382)
Q Consensus 182 ~~----------~~------------------------------------------~~~~~~~~~~~l~~~~L~~~~~-- 207 (382)
.. .. ....++++.++++.+++.+++.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~l 565 (1466)
T PTZ00265 486 SLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSAL 565 (1466)
T ss_pred CccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhC
Confidence 00 00 0011234556677777765432
Q ss_pred --------ccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCC
Q 016817 208 --------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLS 276 (382)
Q Consensus 208 --------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~ 276 (382)
+..+.+||||||||++|||||+++|+|||||| +||+.++..+++.|+++. ++.|+|+|+|||+ ++
T Consensus 566 p~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~--~~~g~TvIiIsHr--ls 641 (1466)
T PTZ00265 566 PDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK--GNENRITIIIAHR--LS 641 (1466)
T ss_pred ccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh--hcCCCEEEEEeCC--HH
Confidence 24567899999999999999999999999999 999999999999999982 3358999999995 44
Q ss_pred hhhhhhhhhhhhhh
Q 016817 277 TEERLDARLKICEY 290 (382)
Q Consensus 277 ~~~~~~d~v~ll~~ 290 (382)
++ +.||+|++|++
T Consensus 642 ~i-~~aD~Iivl~~ 654 (1466)
T PTZ00265 642 TI-RYANTIFVLSN 654 (1466)
T ss_pred HH-HhCCEEEEEeC
Confidence 47 47888888865
No 306
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.7e-38 Score=302.18 Aligned_cols=199 Identities=12% Similarity=0.065 Sum_probs=156.2
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..+.|+++|++++|+..... +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++....
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~-- 89 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKP----VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP-- 89 (257)
T ss_pred CCceEEEEEEEEEeCCCCCc----ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC--
Confidence 35679999999999653222 6999999999999999999999999999999999999 8999999998664321
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccc---------cccCccc--cccccccccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRC---------LRSDDCA--LMKNDAEIDD 210 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~---------~~~l~~~--~L~~~~~~~~ 210 (382)
...+++ .++|++|++.+|+ .|+.+|+.... . ...+.+ .+.++.+ +++.... +.
T Consensus 90 -------~~~~~~-~i~~v~q~~~l~~-~tv~~nl~~~~-----~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~ 153 (257)
T cd03288 90 -------LHTLRS-RLSIILQDPILFS-GSIRFNLDPEC-----K-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-EG 153 (257)
T ss_pred -------HHHHhh-hEEEECCCCcccc-cHHHHhcCcCC-----C-CCHHHHHHHHHHhCcHHHHhhcccccCcEec-cC
Confidence 112343 8999999998887 59988874210 0 001111 1222333 4443333 66
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||+||++|||||+.+|++||||| +||+.++..+.+.++++ . ++.|||++||+++. +.. ||++++
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~---~-~~~tiii~sh~~~~--~~~-~dri~~ 226 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTA---F-ADRTVVTIAHRVST--ILD-ADLVLV 226 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---c-CCCEEEEEecChHH--HHh-CCEEEE
Confidence 78999999999999999999999999999 99999999999999987 2 47999999996665 765 899998
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 227 l~~ 229 (257)
T cd03288 227 LSR 229 (257)
T ss_pred EEC
Confidence 876
No 307
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.6e-38 Score=296.57 Aligned_cols=173 Identities=17% Similarity=0.160 Sum_probs=143.2
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
|+..+++|++||+++|+||||||||||+++|+|+++ ++|+|.++|. .++|++|++..
T Consensus 15 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~----------------------~i~~~~q~~~~ 72 (246)
T cd03237 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----------------------TVSYKPQYIKA 72 (246)
T ss_pred EEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc----------------------eEEEecccccC
Confidence 344444555899999999999999999999999999 8999999874 58899999876
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
++..|+.+++....... . .......++++.+++.+... +++.+|||||||||+|||||+.+|+++|||| +||+
T Consensus 73 ~~~~tv~e~l~~~~~~~--~-~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 73 DYEGTVRDLLSSITKDF--Y-THPYFKTEIAKPLQIEQILD-REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148 (246)
T ss_pred CCCCCHHHHHHHHhhhc--c-ccHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 66789999986432111 1 11223456788899986554 8999999999999999999999999999999 9999
Q ss_pred CcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 244 KPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 244 ~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.++..+.++|+++. ++.|+|||+||||++. +..+||+++++++
T Consensus 149 ~~~~~l~~~l~~~~--~~~~~tiiivsHd~~~--~~~~~d~i~~l~~ 191 (246)
T cd03237 149 EQRLMASKVIRRFA--ENNEKTAFVVEHDIIM--IDYLADRLIVFEG 191 (246)
T ss_pred HHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEcC
Confidence 99999999999983 4458999999996665 8889999999976
No 308
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.7e-38 Score=325.20 Aligned_cols=201 Identities=12% Similarity=0.106 Sum_probs=162.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|+++ . +|+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 266 ~~~l~~~~l~~-----~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~-- 332 (510)
T PRK15439 266 APVLTVEDLTG-----E------GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALST-- 332 (510)
T ss_pred CceEEEeCCCC-----C------CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCH--
Confidence 44788999983 1 3999999999999999999999999999999999998 89999999987643211
Q ss_pred eehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhh-hh---cCccccccccccCcccccc-ccccccccCCC
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSW-MS---EGVHHNQRCLRSDDCALMK-NDAEIDDLKSS 214 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~-~~---~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~L 214 (382)
.. ..+ ..++|++|++ .+|+.+|+.+|+...... .. .....++.+.++++.+++. +.. ++++.+|
T Consensus 333 ----~~--~~~-~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~L 404 (510)
T PRK15439 333 ----AQ--RLA-RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA-EQAARTL 404 (510)
T ss_pred ----HH--HHh-CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCc-cCccccC
Confidence 11 123 3799999984 478888999998532110 00 0111223466788999996 454 4999999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+.++|+++ .++|.|||+||||++. +.++||+++++++
T Consensus 405 SgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l---~~~g~tiIivsHd~~~--i~~~~d~i~~l~~ 478 (510)
T PRK15439 405 SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI---AAQNVAVLFISSDLEE--IEQMADRVLVMHQ 478 (510)
T ss_pred CcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHH---HhCCCEEEEECCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999999999 99999999999999998 3358999999997666 9999999999976
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6e-38 Score=359.42 Aligned_cols=205 Identities=13% Similarity=0.122 Sum_probs=173.4
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
...|+++|+++.|+++++. +|+|+||++++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus 926 ~~~L~I~nLsK~y~~~~k~----aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~----- 996 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRP----AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET----- 996 (2272)
T ss_pred CceEEEEeEEEEecCCCce----EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-----
Confidence 4579999999999643333 5999999999999999999999999999999999998 89999999997631
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.....|+ .+||++|++.+++.+||+||+.+.....+.. ...++++.++++.+||.+..+ +++.+||||||||
T Consensus 997 -----~~~~~r~-~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqKQR 1069 (2272)
T TIGR01257 997 -----NLDAVRQ-SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-EEAQDLSGGMQRK 1069 (2272)
T ss_pred -----hHHHHhh-cEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHH
Confidence 1122454 8999999999999999999998754322211 112345778899999987654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.+++.++++|+++ + +|+|||++|||++. +..+||++++|++
T Consensus 1070 LsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l---~-~g~TIIltTHdmde--a~~laDrI~iL~~ 1135 (2272)
T TIGR01257 1070 LSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY---R-SGRTIIMSTHHMDE--ADLLGDRIAIISQ 1135 (2272)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH---h-CCCEEEEEECCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 99999999999999998 3 48999999996655 8889999999976
No 310
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5e-38 Score=292.85 Aligned_cols=177 Identities=15% Similarity=0.046 Sum_probs=144.6
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC--h
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN--Y 169 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~--~ 169 (382)
|+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++. ..+ +.++|+||++.+++ .
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--------------~~~-~~i~~v~q~~~~~~~~~ 65 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG--------------KGW-RHIGYVPQRHEFAWDFP 65 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch--------------Hhh-CcEEEecccccccCCCC
Confidence 6789999999999999999999999999999 8999999998532 123 37999999986643 3
Q ss_pred hhhhhhHHHHHhhh-h---cC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 170 NRVHEGLEELSSWM-S---EG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 170 ~tv~eni~~~~~~~-~---~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
.|+.+|+.+..... . .. ....+++.++++.+++.+... +++.+|||||||||+|||||+.+|++||||| +|
T Consensus 66 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred ccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 78999986532110 0 01 112234677889999986554 8999999999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+.+.|+++ .++|.|+|++|||++. +.++||+++++++
T Consensus 145 D~~~~~~l~~~l~~~---~~~~~tvii~sH~~~~--~~~~~d~i~~l~G 188 (223)
T TIGR03771 145 DMPTQELLTELFIEL---AGAGTAILMTTHDLAQ--AMATCDRVVLLNG 188 (223)
T ss_pred CHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEECC
Confidence 999999999999998 3458999999996655 8888999888855
No 311
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=309.94 Aligned_cols=205 Identities=14% Similarity=0.104 Sum_probs=173.3
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..+++++++|.|++- + ++++|||+|++||+.||+|.||||||||+++|.|+++ ++|+|+++|+.+.-.+
T Consensus 3 ~~l~~~~itK~f~~~---~---And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~s---- 72 (501)
T COG3845 3 PALEMRGITKRFPGV---V---ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKS---- 72 (501)
T ss_pred ceEEEeccEEEcCCE---E---ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCC----
Confidence 467889999999722 2 7999999999999999999999999999999999999 8999999999764211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh----cCccccccccccCccccccccccccccCCCcccee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS----EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
+.+ ..| ..||||+|++.|++.+||.||+........ ......+++.++.++.||.=..+ +++.+||-|||
T Consensus 73 --P~d--A~~-~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-~~V~dLsVG~q 146 (501)
T COG3845 73 --PRD--AIR-LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-AKVADLSVGEQ 146 (501)
T ss_pred --HHH--HHH-cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-ceeecCCcchh
Confidence 111 133 489999999999999999999965432110 00112356777888999985555 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||.|-+||+++|++||||| -|-|...+++++.++++ ++.|+|||+||| .+.++.++||++.+|+.
T Consensus 147 QRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l---~~~G~tIi~ITH--KL~Ev~~iaDrvTVLR~ 215 (501)
T COG3845 147 QRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRL---AAEGKTIIFITH--KLKEVMAIADRVTVLRR 215 (501)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEec--cHHHHHHhhCeeEEEeC
Confidence 99999999999999999999 89999999999999999 668999999999 88889999999999986
No 312
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-37 Score=325.51 Aligned_cols=191 Identities=13% Similarity=0.075 Sum_probs=159.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++|+++|++++|+++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~~-~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--------- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK-KQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--------- 69 (556)
T ss_pred cEEEEEeeEEEEeCCC-Ce----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------
Confidence 3589999999999622 22 6999999999999999999999999999999999998 8999998642
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-------h-----cCcc----------------------
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-------S-----EGVH---------------------- 188 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-------~-----~~~~---------------------- 188 (382)
..+||++|++.+++.+|+.+|+.+....+ . ....
T Consensus 70 ------------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (556)
T PRK11819 70 ------------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAAD 137 (556)
T ss_pred ------------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcC
Confidence 27999999999998899999997532100 0 0000
Q ss_pred ---ccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccC
Q 016817 189 ---HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCN 262 (382)
Q Consensus 189 ---~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~ 262 (382)
..+++.++++.+|+. .. ++++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ .
T Consensus 138 ~~~~~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~-----~ 210 (556)
T PRK11819 138 AWDLDSQLEIAMDALRCP-PW-DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY-----P 210 (556)
T ss_pred ccchHHHHHHHHHhCCCC-cc-cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC-----C
Confidence 023456678888886 34 48999999999999999999999999999999 99999999999999986 2
Q ss_pred CCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 263 ENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 263 g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.|||+||||++. +..+||+|++|++
T Consensus 211 -~tviiisHd~~~--~~~~~d~i~~l~~ 235 (556)
T PRK11819 211 -GTVVAVTHDRYF--LDNVAGWILELDR 235 (556)
T ss_pred -CeEEEEeCCHHH--HHhhcCeEEEEeC
Confidence 499999996666 8899999999976
No 313
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=322.13 Aligned_cols=205 Identities=11% Similarity=0.083 Sum_probs=161.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+.+|+++|+++.| .. +|+++||+|++||+++|+||||||||||+++|+|+.+ ++|+|+++|+++...+.
T Consensus 248 ~~~i~~~~l~~~~--~~------~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-- 317 (491)
T PRK10982 248 EVILEVRNLTSLR--QP------SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA-- 317 (491)
T ss_pred CcEEEEeCccccc--Cc------ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCH--
Confidence 3579999999974 22 6999999999999999999999999999999999999 89999999987642211
Q ss_pred eehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHH--HHhhhh-cC----ccccccccccCccccccccccccccC
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEE--LSSWMS-EG----VHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~--~~~~~~-~~----~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
. ..++ +.++|++|++ .+|+.+++.+|... ...... .+ ....+.+.++++.+++.+...++++.
T Consensus 318 ----~--~~~~-~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 390 (491)
T PRK10982 318 ----N--EAIN-HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG 390 (491)
T ss_pred ----H--HHHH-CCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc
Confidence 1 1123 3799999984 46777777766311 111100 01 01123456678888885322359999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|+|||||| +||+.++..++++|+++ .++|.|||+||||++. +..+||++++++
T Consensus 391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l---~~~~~tvi~vsHd~~~--~~~~~d~v~~l~ 465 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAEL---AKKDKGIIIISSEMPE--LLGITDRILVMS 465 (491)
T ss_pred cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHH---HHCCCEEEEECCChHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 99999999999999998 3468999999996666 889999999996
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 466 ~ 466 (491)
T PRK10982 466 N 466 (491)
T ss_pred C
Confidence 5
No 314
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=321.92 Aligned_cols=201 Identities=11% Similarity=0.032 Sum_probs=162.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..++++|+++. . +++|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++....
T Consensus 256 ~~l~~~~~~~~----~------~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~---- 321 (501)
T PRK11288 256 VRLRLDGLKGP----G------LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS---- 321 (501)
T ss_pred cEEEEeccccC----C------cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCC----
Confidence 35788888732 2 5999999999999999999999999999999999999 8999999998653211
Q ss_pred ehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhhhhc--C----c-cccccccccCcccccc-ccccccccC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSWMSE--G----V-HHNQRCLRSDDCALMK-NDAEIDDLK 212 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~~~~--~----~-~~~~~~~~~l~~~~L~-~~~~~~~~~ 212 (382)
.. ...+ +.++|++|++ .+|+.+|+.+|+......... + . ..++.+.++++.+++. +.. ++++.
T Consensus 322 --~~--~~~~-~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~ 395 (501)
T PRK11288 322 --PR--DAIR-AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR-EQLIM 395 (501)
T ss_pred --HH--HHHh-CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc-cCccc
Confidence 01 1123 3799999996 388889999998643211100 0 0 1123467788999995 444 49999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..++++|+++ .++|.|||+||||++. +.++||++++++
T Consensus 396 ~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l---~~~g~tviivsHd~~~--~~~~~d~i~~l~ 470 (501)
T PRK11288 396 NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL---AAQGVAVLFVSSDLPE--VLGVADRIVVMR 470 (501)
T ss_pred cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH---HhCCCEEEEECCCHHH--HHhhCCEEEEEE
Confidence 999999999999999999999999999 99999999999999998 3468999999997666 999999999996
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 471 ~ 471 (501)
T PRK11288 471 E 471 (501)
T ss_pred C
Confidence 5
No 315
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-38 Score=305.34 Aligned_cols=250 Identities=14% Similarity=0.105 Sum_probs=197.7
Q ss_pred eeccccchhhhhhhccCCCCccccchhHHHHHHhhhhhhc---------CcCchhHHHHHhhhcccCCeeeecCCcccCC
Q 016817 22 WWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALI---------APDGLNELRHKFLSYRSGDFWIPIGGIQKGG 92 (382)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~i~nvs~~y~~~~~~v~~~vL~~is 92 (382)
-.+...|+..++..-..+.++...+++...+++.+..... ...+.+.|.+|+|.|.... + +|+++|
T Consensus 209 l~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~----iL~~is 283 (497)
T COG5265 209 LFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRR-P----ILNGIS 283 (497)
T ss_pred HhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccc-h----hhcCcc
Confidence 3455667777777777777778888888888777754111 1234578999999997544 2 699999
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|++++|+.+|++||||+||||++++|.++++ .+|.|.+||+++++.. ...+|+ .||+||||..||. .|
T Consensus 284 f~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt---------q~slR~-aIg~VPQDtvLFN-Dt 352 (497)
T COG5265 284 FTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT---------QQSLRR-AIGIVPQDTVLFN-DT 352 (497)
T ss_pred ccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH---------HHHHHH-HhCcCcccceehh-hh
Confidence 9999999999999999999999999999999 9999999999876432 223665 8999999999997 79
Q ss_pred hhhhHHHHHhhhhcCccccccccccCccccccccccccccCC-----------CccceeeecceeeeehhHHHHHHHHh-
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-----------SPKYVLRRVDFAMVVSNIAEIYKALK- 239 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----------LSGGqkQRvaIAraL~~~P~iLLLDE- 239 (382)
+..|+.+. .....++.+..+++.+.+.+++. ..|.. |||||||||+|||+++++|+||+|||
T Consensus 353 i~yni~yg-----r~~at~eev~aaa~~aqi~~fi~-~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~dea 426 (497)
T COG5265 353 IAYNIKYG-----RPDATAEEVGAAAEAAQIHDFIQ-SLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426 (497)
T ss_pred HHHHHhcc-----CccccHHHHHHHHHHhhhhHHHH-hCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehh
Confidence 99999543 44556667777777777766554 55543 99999999999999999999999999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh--cccccccce
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--LGVSEISGV 299 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--~~~~~~~~v 299 (382)
+||..+++.++..|++.. .|.|.++|.| +++++..+|.++++-++ ++.|..++.
T Consensus 427 tsaldt~te~~iq~~l~~~~----~~rttlviah--rlsti~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 427 TSALDTHTEQAIQAALREVS----AGRTTLVIAH--RLSTIIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred hhHhhhhHHHHHHHHHHHHh----CCCeEEEEee--hhhhccCCceEEEeeCCEEEecCcHHHH
Confidence 999999999999999983 6899999999 88888875554444444 445544333
No 316
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.2e-37 Score=306.09 Aligned_cols=182 Identities=16% Similarity=0.118 Sum_probs=147.8
Q ss_pred eecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHh
Q 016817 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSS 181 (382)
Q Consensus 103 lvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 181 (382)
|+||||||||||+|+|+|+++ ++|+|.++|+++..... .+ +.+||+||++.+|+++|+.+|+.+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~-----------~~-~~i~~v~q~~~l~~~~tv~enl~~~~~ 68 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-----------HL-RHINMVFQSYALFPHMTVEENVAFGLK 68 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-----------HH-CCEEEEecCccccCCCcHHHHHHHHHh
Confidence 689999999999999999999 89999999987643211 12 379999999999999999999976532
Q ss_pred hhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCcc
Q 016817 182 WMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPG 257 (382)
Q Consensus 182 ~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~ 257 (382)
..... ....+++.++++.+++.+..+ +++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++.
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 69 MRKVPRAEIKPRVLEALRLVQLEEFAD-RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCcchhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 11111 111245677899999986654 9999999999999999999999999999999 999999999999999983
Q ss_pred ccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 258 LRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 258 ~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
++.|+|+|+||||++. +..+||++++|++ +..+++.+++.
T Consensus 148 --~~~g~tiiivTHd~~e--~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 148 --EQLGITFVFVTHDQEE--AMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred --HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4458999999996554 8899999999987 33445555554
No 317
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.4e-37 Score=321.12 Aligned_cols=207 Identities=13% Similarity=0.046 Sum_probs=159.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcc--cceeeeEeecCCCcccc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSR--SGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~--~G~I~i~G~~i~~~~~~ 141 (382)
.++++++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+.++ +|+|+++|+++....
T Consensus 258 ~~~l~~~~l~~~~~~~~------il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~-- 329 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP------ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE-- 329 (490)
T ss_pred CceEEEeceEEEECCee------EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCC--
Confidence 45899999999996432 59999999999999999999999999999999998773 999999998642110
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCCh--hhhhhhHHHHHhh---hhc--CccccccccccCccccccc-cccccccCC
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNY--NRVHEGLEELSSW---MSE--GVHHNQRCLRSDDCALMKN-DAEIDDLKS 213 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~--~tv~eni~~~~~~---~~~--~~~~~~~~~~~l~~~~L~~-~~~~~~~~~ 213 (382)
.....|+ .+||++|++.++.. .++.+++...... ... ....++++.++++.+++.+ .. ++++.+
T Consensus 330 ------~~~~~~~-~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~ 401 (490)
T PRK10938 330 ------TIWDIKK-HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-DAPFHS 401 (490)
T ss_pred ------CHHHHHh-hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-cCchhh
Confidence 0111333 79999998765432 3555554321110 000 0111235677899999986 44 489999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh-hhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER-LDARLKICE 289 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~-~~d~v~ll~ 289 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.+.|||+||||++. +.. +||++++|+
T Consensus 402 LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~--~~~~~tviivsHd~~~--~~~~~~d~v~~l~ 477 (490)
T PRK10938 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLI--SEGETQLLFVSHHAED--APACITHRLEFVP 477 (490)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--hcCCcEEEEEecchhh--hhhhhheeEEEec
Confidence 99999999999999999999999999 999999999999999983 3323569999997666 776 589999987
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 478 ~ 478 (490)
T PRK10938 478 D 478 (490)
T ss_pred C
Confidence 5
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=322.53 Aligned_cols=186 Identities=13% Similarity=0.151 Sum_probs=158.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~~~------~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 381 (530)
T PRK15064 318 NALEVENLTKGFDNGP------LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------- 381 (530)
T ss_pred ceEEEEeeEEeeCCce------eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------
Confidence 4799999999996432 5999999999999999999999999999999999998 8999999874
Q ss_pred ehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcCccccccccccCcccccc-ccccccccCCCccceee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMK-NDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSGGqkQ 220 (382)
..+||++|++. +++.+|+.+|+.... .....++++.++++.+++. +.. ++++.+|||||||
T Consensus 382 -----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~q 445 (530)
T PRK15064 382 -----------ANIGYYAQDHAYDFENDLTLFDWMSQWR----QEGDDEQAVRGTLGRLLFSQDDI-KKSVKVLSGGEKG 445 (530)
T ss_pred -----------eEEEEEcccccccCCCCCcHHHHHHHhc----cCCccHHHHHHHHHHcCCChhHh-cCcccccCHHHHH
Confidence 37999999864 556689999875321 1112234567788999985 344 5999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+.+|++||||| +||+.++..+.+.|+++ +.|||+||||++. +..+||+++++++
T Consensus 446 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vsHd~~~--~~~~~d~i~~l~~ 510 (530)
T PRK15064 446 RMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY------EGTLIFVSHDREF--VSSLATRIIEITP 510 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC------CCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999 99999999999999886 3499999997666 8899999999976
No 319
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.6e-37 Score=324.99 Aligned_cols=188 Identities=17% Similarity=0.097 Sum_probs=162.1
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++. .|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++ .
T Consensus 338 ~~~l~~~~ls~~~~~~-------~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~--------- 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-------SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L--------- 400 (590)
T ss_pred ceEEEEcceEEEECCE-------EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e---------
Confidence 4579999999999532 3899999999999999999999999999999999999 89999875 1
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.++|++|++.+++.+||.+|+......+ .....+.++++.+++.+.. ++++.+|||||||||
T Consensus 401 -------------~i~y~~Q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~L~~l~l~~~~-~~~~~~LSGGe~QRv 462 (590)
T PRK13409 401 -------------KISYKPQYIKPDYDGTVEDLLRSITDDL----GSSYYKSEIIKPLQLERLL-DKNVKDLSGGELQRV 462 (590)
T ss_pred -------------eEEEecccccCCCCCcHHHHHHHHhhhc----ChHHHHHHHHHHCCCHHHH-hCCcccCCHHHHHHH
Confidence 5899999988888899999997532111 1123456789999998655 499999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.++|+++. ++.|.|||+||||++. +..+||+++++++
T Consensus 463 aiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tviivsHD~~~--~~~~aDrvivl~~ 529 (590)
T PRK13409 463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA--EEREATALVVDHDIYM--IDYISDRLMVFEG 529 (590)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEcC
Confidence 99999999999999999 999999999999999984 4458999999997766 8889999999987
No 320
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.6e-37 Score=325.07 Aligned_cols=198 Identities=13% Similarity=0.023 Sum_probs=161.0
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c--cceeeeEeecCCCcccceeeh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R--SGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~--~G~I~i~G~~i~~~~~~~~~~ 145 (382)
.+|++++|+++. +|+|+|+++++||++||+||||||||||+++|+|+.+ . +|+|.+||+++..
T Consensus 71 ~~~l~~~~~~~~------iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-------- 136 (659)
T PLN03211 71 ISDETRQIQERT------ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-------- 136 (659)
T ss_pred cccccccCCCCe------eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch--------
Confidence 567888886433 6999999999999999999999999999999999987 4 8999999986421
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Ccc---ccccccccCcccccccccc----ccccCCCccc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVH---HNQRCLRSDDCALMKNDAE----IDDLKSSPKY 217 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~---~~~~~~~~l~~~~L~~~~~----~~~~~~LSGG 217 (382)
..+ +++|||+|++.+++.+||+||+.+.+..... ... ..++++++++.+||.+..+ ++.+.+||||
T Consensus 137 -----~~~-~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgG 210 (659)
T PLN03211 137 -----QIL-KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGG 210 (659)
T ss_pred -----hhc-cceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChh
Confidence 122 3799999999999999999999865422111 111 1234667888999975432 3567889999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||+|||+|+.+|+||+||| +||+.++..+.+.|++++ ++|+|||++||+++. ++.+++|+++++++
T Consensus 211 erqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~---~~g~TvI~~sH~~~~-~i~~~~D~iilL~~ 282 (659)
T PLN03211 211 ERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA---QKGKTIVTSMHQPSS-RVYQMFDSVLVLSE 282 (659)
T ss_pred hhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH---hCCCEEEEEecCCCH-HHHHhhceEEEecC
Confidence 9999999999999999999999 999999999999999983 368999999996542 26778999999876
No 321
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=296.29 Aligned_cols=175 Identities=15% Similarity=0.054 Sum_probs=143.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|. +++++|++.
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-----------------------~~~~~~~~~ 95 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----------------------VSVIAISAG 95 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-----------------------EeEEecccC
Confidence 6999999999999999999999999999999999999 8999999884 234556666
Q ss_pred CCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 166 GFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+++.+|+.+|+.......+... ...+.+..+++.+++.+.+. +++.+|||||+|||+|||||+.+|++||||| +|
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 96 LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIY-QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 6677899999865322111111 11122345677778876654 8999999999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+.+.|.++ ++.|.|||++|||+.. +..+|++++++++
T Consensus 175 D~~~~~~l~~~L~~~---~~~g~tiIiisH~~~~--i~~~~d~i~~l~~ 218 (264)
T PRK13546 175 DQTFAQKCLDKIYEF---KEQNKTIFFVSHNLGQ--VRQFCTKIAWIEG 218 (264)
T ss_pred CHHHHHHHHHHHHHH---HHCCCEEEEEcCCHHH--HHHHcCEEEEEEC
Confidence 999999999999987 3468999999996555 8889999999876
No 322
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.4e-37 Score=275.03 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=131.1
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++. + +|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.
T Consensus 1 l~~~~l~~~~~~~--~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~----- 69 (163)
T cd03216 1 LELRGITKRFGGV--K----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP----- 69 (163)
T ss_pred CEEEEEEEEECCe--E----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCH-----
Confidence 3578999999643 2 5999999999999999999999999999999999999 89999999986643211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
. ...+ +.++|+|| |||||+||++||
T Consensus 70 -~--~~~~-~~i~~~~q---------------------------------------------------LS~G~~qrl~la 94 (163)
T cd03216 70 -R--DARR-AGIAMVYQ---------------------------------------------------LSVGERQMVEIA 94 (163)
T ss_pred -H--HHHh-cCeEEEEe---------------------------------------------------cCHHHHHHHHHH
Confidence 0 1123 37888888 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|++||||| +||+.++..+.+.|+++ .++|.|+|++|||++. +..+||+++++++
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~~~~tiii~sh~~~~--~~~~~d~~~~l~~ 157 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRL---RAQGVAVIFISHRLDE--VFEIADRVTVLRD 157 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 99999999999999 99999999999999998 3458999999996554 8888999988865
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-36 Score=318.72 Aligned_cols=190 Identities=13% Similarity=0.088 Sum_probs=156.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++|++++|+++. + +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.+++.
T Consensus 3 ~~i~~~nls~~~~~~~-~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKK-E----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG---------- 67 (552)
T ss_pred EEEEEeeEEEecCCCC-e----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------
Confidence 4789999999996222 2 5999999999999999999999999999999999998 8999998652
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-------h-----cCcc-c---------------------
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-------S-----EGVH-H--------------------- 189 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-------~-----~~~~-~--------------------- 189 (382)
..+||++|++.+++.+|+.+|+.+..... . .... .
T Consensus 68 -----------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (552)
T TIGR03719 68 -----------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136 (552)
T ss_pred -----------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 27999999999998899999997632110 0 0000 0
Q ss_pred ---cccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCC
Q 016817 190 ---NQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNE 263 (382)
Q Consensus 190 ---~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g 263 (382)
.+++.++++.+|+.. . ++++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ +
T Consensus 137 ~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~------~ 208 (552)
T TIGR03719 137 WDLDRKLEIAMDALRCPP-W-DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY------P 208 (552)
T ss_pred chhHHHHHHHHhhCCCCc-c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC------C
Confidence 022344666777753 3 48899999999999999999999999999999 99999999999999886 2
Q ss_pred CCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 264 NPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 264 ~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.|||+||||++. +..+||+++++++
T Consensus 209 ~tvIiisHd~~~--~~~~~d~v~~l~~ 233 (552)
T TIGR03719 209 GTVVAVTHDRYF--LDNVAGWILELDR 233 (552)
T ss_pred CeEEEEeCCHHH--HHhhcCeEEEEEC
Confidence 499999997666 8889999999876
No 324
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.4e-37 Score=321.46 Aligned_cols=191 Identities=14% Similarity=0.109 Sum_probs=158.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|++++|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+++.
T Consensus 322 ~~~l~~~~l~~~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--------- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGDRL------LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET--------- 386 (556)
T ss_pred CeEEEEEeEEEEECCee------eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---------
Confidence 35899999999996432 5999999999999999999999999999999999998 8999998432
Q ss_pred eehhhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+||++|++ .+++.+|+.+|+.+........ ........+++.+++.+...++++.+||||||||
T Consensus 387 ------------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 453 (556)
T PRK11819 387 ------------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVG-NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNR 453 (556)
T ss_pred ------------eEEEEEeCchhhcCCCCCHHHHHHhhccccccc-ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHH
Confidence 1689999996 6788899999997542111111 1122345678889996433348999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+.+.|.++ .+ |||+||||++. +..+||+++++++
T Consensus 454 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-tvi~vtHd~~~--~~~~~d~i~~l~~ 517 (556)
T PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-----PG-CAVVISHDRWF--LDRIATHILAFEG 517 (556)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CC-eEEEEECCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 99999999999999987 34 89999997666 8899999999863
No 325
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.4e-37 Score=321.23 Aligned_cols=191 Identities=14% Similarity=0.108 Sum_probs=158.4
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|++++.
T Consensus 320 ~~~l~~~~l~~~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~--------- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKL------LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET--------- 384 (552)
T ss_pred CeEEEEeeEEEEECCee------eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc---------
Confidence 35899999999996432 5999999999999999999999999999999999998 8999998432
Q ss_pred eehhhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+||++|++ .+++.+|+.+|+.+........ .......++++.+++.+...++++.+||||||||
T Consensus 385 ------------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qr 451 (552)
T TIGR03719 385 ------------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLG-KREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNR 451 (552)
T ss_pred ------------eEEEEEeCCccccCCCCcHHHHHHhhccccccC-cchHHHHHHHHhCCCChhHhcCchhhCCHHHHHH
Confidence 1689999996 4788899999997542111111 1122345678889996433348999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+.++|+++ .+ |||+||||++. +..+||+++++++
T Consensus 452 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-~viivsHd~~~--~~~~~d~i~~l~~ 515 (552)
T TIGR03719 452 VHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-----AG-CAVVISHDRWF--LDRIATHILAFEG 515 (552)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-----CC-eEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 99999999999999997 34 89999997666 8889999999864
No 326
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=315.30 Aligned_cols=205 Identities=17% Similarity=0.167 Sum_probs=161.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|+++.|+.+.... +|+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~---IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHY---ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------- 88 (549)
T ss_pred cceeEEEEEEEecCCCccce---EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-------
Confidence 45788999999887643211 5999999999999999999999999999999999998 899999998631
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
. +.+.+.+++.+|+.+|+.+........ ....+.+.++++.+++.+.+. +++.+||||||||
T Consensus 89 -------------~---i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-~~~~~LSGGQrQR 151 (549)
T PRK13545 89 -------------L---IAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-QPVKTYSSGMKSR 151 (549)
T ss_pred -------------e---EEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-CCcccCCHHHHHH
Confidence 1 122334556689999997543211111 111233556788899986655 8999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++ ++.|.|||+||||++. +..+||+++++++ ...++
T Consensus 152 VaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el---~~~G~TIIIVSHdl~~--i~~l~DrIivL~~GkIv~~G~ 226 (549)
T PRK13545 152 LGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF---KEQGKTIFFISHSLSQ--VKSFCTKALWLHYGQVKEYGD 226 (549)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEECCHHH--HHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999 99999999999999997 3468999999996655 8889999999976 33444
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
+.+++
T Consensus 227 ~~el~ 231 (549)
T PRK13545 227 IKEVV 231 (549)
T ss_pred HHHHH
Confidence 44444
No 327
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=275.18 Aligned_cols=209 Identities=16% Similarity=0.092 Sum_probs=165.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|+++.|+.+.|..+. +.++++|+++||+|++|+++.|+|.||||||||+|+|+|-+. ++|+|.++|.++...+.
T Consensus 1 Mi~~~~~~~~f~~g~-~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~---- 75 (263)
T COG1101 1 MISLSNATKTFFKGT-PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV---- 75 (263)
T ss_pred CcccccceeeecCCC-hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCH----
Confidence 466778888876543 223458999999999999999999999999999999999999 99999999998865432
Q ss_pred hhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhh-cCccc------cccccccCcc--ccccccccccccCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMS-EGVHH------NQRCLRSDDC--ALMKNDAEIDDLKS 213 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~-~~~~~------~~~~~~~l~~--~~L~~~~~~~~~~~ 213 (382)
.++ ...++-|||||. .++.+|+.||+......-. ++... .+...+-++. .|+++.+. .++.-
T Consensus 76 --~~R----A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~-~~igl 148 (263)
T COG1101 76 --AKR----ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLS-DRIGL 148 (263)
T ss_pred --HHH----hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhc-Chhhh
Confidence 222 236778999974 6899999999976543210 11111 1112233443 35566665 78888
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||-+++++|.++.|+||+||| +|||.+...++++-.++. .+.+.|.+||||+|+- +..|.+|.++|++
T Consensus 149 LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV--~~~klTtlMVTHnm~~--Al~yG~RlImLh~ 224 (263)
T COG1101 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV--EEHKLTTLMVTHNMED--ALDYGNRLIMLHS 224 (263)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHH--HhcCCceEEEeccHHH--HHhhCCeEEEEeC
Confidence 99999999999999999999999999 999999999999999984 6778999999995555 9999999999987
No 328
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.9e-37 Score=262.20 Aligned_cols=198 Identities=16% Similarity=0.067 Sum_probs=160.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~ 141 (382)
++.++||+.+.++.- .|-++||+|.+||++.|+||||||||||+..+.|.+. . +|+++++++++.-.+.
T Consensus 2 ~l~l~nvsl~l~g~c------LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa- 74 (213)
T COG4136 2 MLCLKNVSLRLPGSC------LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA- 74 (213)
T ss_pred ceeeeeeeecCCCce------EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch-
Confidence 567889987775443 4899999999999999999999999999999999987 3 8999999997653332
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+ +++|+.|||+.|||+++|.+|+.+....-.++...+..+..++++.||..... +.|.+||||||-|
T Consensus 75 ----------~q-Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~-~dP~tlSGGQrAR 142 (213)
T COG4136 75 ----------AQ-RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFH-QDPATLSGGQRAR 142 (213)
T ss_pred ----------hh-hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhh-cChhhcCcchHHH
Confidence 22 48999999999999999999996543111134444455778899999998766 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
|++-|+|+.+|+.++||| .||...+.++.+..-.-. ++.|..+|+||||..- +. +..||+-
T Consensus 143 vaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~--r~agiPtv~VTHD~~D--vp-agsrVie 206 (213)
T COG4136 143 VALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV--RAAGIPTVQVTHDLQD--VP-AGSRVIE 206 (213)
T ss_pred HHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHH--HhcCCCeEEEeccccc--CC-CCCeeee
Confidence 999999999999999999 899988888887664432 5579999999996544 44 4555543
No 329
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.1e-36 Score=287.66 Aligned_cols=194 Identities=15% Similarity=0.093 Sum_probs=154.8
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee-----------eEeecCCC
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGN 137 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~-----------i~G~~i~~ 137 (382)
.||+++|+.+. . +|+|+|+ +++|++++|+||||||||||+|+|+|+++ ++|+|+ ++|+++.+
T Consensus 4 ~~~~~~y~~~~-~----~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 4 DEPVHRYGPNS-F----KLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cCcceeecCcc-h----hhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 37889996432 1 6999995 99999999999999999999999999999 899996 66665421
Q ss_pred cccceeehhhhhhhHhh--hccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCc
Q 016817 138 SSHTITMYMEEHNVMRS--LQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~r~--~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
.. ...++ ..++|++|++.+++ .++.+++.+.. ......+.+.++++.+|+.+... +.+.+||
T Consensus 78 ~~----------~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l----~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS 141 (255)
T cd03236 78 YF----------TKLLEGDVKVIVKPQYVDLIP-KAVKGKVGELL----KKKDERGKLDELVDQLELRHVLD-RNIDQLS 141 (255)
T ss_pred hh----------HHhhhcccceeeecchhccCc-hHHHHHHHHHh----chhHHHHHHHHHHHHcCCchhhc-CChhhCC
Confidence 10 01111 14789999888887 47777775431 11122345677888999986654 8999999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||++|||||+.+|+++|||| +||+.++..+.+.|+++ .++++|||+||||++. +..+||+++++++
T Consensus 142 ~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l---~~~~~tIIiiSHd~~~--~~~~ad~i~~l~~ 214 (255)
T cd03236 142 GGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL---AEDDNYVLVVEHDLAV--LDYLSDYIHCLYG 214 (255)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEECCHHH--HHHhCCEEEEECC
Confidence 999999999999999999999999 99999999999999998 3358999999996655 8889999999987
No 330
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-36 Score=267.34 Aligned_cols=221 Identities=15% Similarity=0.155 Sum_probs=182.9
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe-ecCCCcccce
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ-TSSGNSSHTI 142 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G-~~i~~~~~~~ 142 (382)
..++++||+.+|++-. +|+++||+|.+||.-+|||||||||||++.+|+|-.+ +.|+++|+| .++...+
T Consensus 4 ~iL~~~~vsVsF~GF~------Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~--- 74 (249)
T COG4674 4 IILYLDGVSVSFGGFK------ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP--- 74 (249)
T ss_pred ceEEEeceEEEEccee------eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC---
Confidence 4678899999996433 7999999999999999999999999999999999999 789999999 6655332
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh-------hh--cCccccccccccCccccccccccccccCC
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW-------MS--EGVHHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~-------~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
.....|. .||--||.|..|..+||+||++..... +. .....+.+++++|+..||.+... +....
T Consensus 75 -----e~~IAr~-GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-~~A~~ 147 (249)
T COG4674 75 -----EHRIARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-RLAAL 147 (249)
T ss_pred -----HHHHHHh-ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-hhhhh
Confidence 2222444 899999999999999999999764321 11 11223357888999999997654 88899
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||.||||++.|++.++++|++|+||| ++-...+...-++|+.++ .+.+|++|.|||.+ +..++++|-+|+.
T Consensus 148 LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la----~~hsilVVEHDM~F--vr~~A~~VTVlh~ 221 (249)
T COG4674 148 LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA----GKHSILVVEHDMGF--VREIADKVTVLHE 221 (249)
T ss_pred hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHh----cCceEEEEeccHHH--HHHhhheeEEEec
Confidence 99999999999999999999999999 888888899999999984 56899999999999 9999999999987
Q ss_pred ---cccccccceeeEEEecc
Q 016817 291 ---LGVSEISGVYDIVCLTE 307 (382)
Q Consensus 291 ---~~~~~~~~v~~~~~l~~ 307 (382)
+..|+-.++-++|.+.+
T Consensus 222 G~VL~EGsld~v~~dp~ViE 241 (249)
T COG4674 222 GSVLAEGSLDEVQNDPKVIE 241 (249)
T ss_pred cceeecccHHHhhcCcceEe
Confidence 56666666666655544
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-36 Score=316.83 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=154.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ ++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~~~------il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRI------ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------- 374 (638)
T ss_pred CceEEEEeeEEEeCCee------eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------
Confidence 44799999999996432 5999999999999999999999999999999999998 8999998632
Q ss_pred eehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+||++|+. .+.+..++.+++... ......+.+.++++.+++.....++++.+|||||||
T Consensus 375 ------------~~igy~~Q~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekq 437 (638)
T PRK10636 375 ------------IKLGYFAQHQLEFLRADESPLQHLARL-----APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKA 437 (638)
T ss_pred ------------EEEEEecCcchhhCCccchHHHHHHHh-----CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHH
Confidence 2689999974 344555666655311 111223456778899999643234899999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||+|+.+|++||||| +||+.++..+.+.|.++ .| |||+||||++. +..+||+++++++
T Consensus 438 Rl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~g-tvi~vSHd~~~--~~~~~d~i~~l~~ 502 (638)
T PRK10636 438 RLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-----EG-ALVVVSHDRHL--LRSTTDDLYLVHD 502 (638)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-eEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 9999999999999999999 99999999999999986 34 99999997776 8899999999976
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.1e-35 Score=316.00 Aligned_cols=190 Identities=16% Similarity=0.118 Sum_probs=156.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++||+++|++. . +|+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.+ |.+
T Consensus 317 ~~~l~~~~l~~~~~~~--~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~-------- 381 (635)
T PRK11147 317 KIVFEMENVNYQIDGK--Q----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK-------- 381 (635)
T ss_pred CceEEEeeeEEEECCe--E----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC--------
Confidence 3479999999999643 2 5999999999999999999999999999999999998 8999998 542
Q ss_pred eehhhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
..+||++|++ .+++.+|+.+|+........ .......+..+++.+++.....++++.+||||||||
T Consensus 382 ------------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqR 448 (635)
T PRK11147 382 ------------LEVAYFDQHRAELDPEKTVMDNLAEGKQEVM-VNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNR 448 (635)
T ss_pred ------------cEEEEEeCcccccCCCCCHHHHHHhhccccc-ccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHH
Confidence 1689999985 57888999999965321110 011123456678888885332348999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|+|||||+.+|++||||| +||+.++..+.++|+++ +.|||+||||... +..+|+++++++
T Consensus 449 l~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vSHd~~~--~~~~~d~i~~l~ 511 (635)
T PRK11147 449 LLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY------QGTVLLVSHDRQF--VDNTVTECWIFE 511 (635)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC------CCeEEEEECCHHH--HHHhcCEEEEEe
Confidence 999999999999999999 99999999999999885 3499999997666 888999999986
No 333
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=254.55 Aligned_cols=229 Identities=16% Similarity=0.091 Sum_probs=175.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+.|.++++++|+.|+.+. ..+||||++.+||+++|+|.||||||||++||++-+. +.|+|.+.-.+-... ..
T Consensus 3 ~~PLL~V~~lsk~Yg~~~------gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~-dl 75 (258)
T COG4107 3 DKPLLSVSGLSKLYGPGK------GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPR-DL 75 (258)
T ss_pred CCcceeehhhhhhhCCCc------CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCch-hH
Confidence 356899999999998765 5999999999999999999999999999999999988 899999876432111 11
Q ss_pred eeehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcC--ccccccccccCccccccccccccccCCCccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEG--VHHNQRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~--~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
..+...+++.+.+..-|||-|+|. |-...+..-||.+-....+.. -..++.+.++++.+.++...-|..|.++|||
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 223333333333337899999974 222233344554322111100 1123455678999998765455889999999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---c
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---L 291 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~ 291 (382)
||||+.|||-|+..|+++++|| +||..-+..++++++.+. .+.|.++++||||+.. +.-.+++.++|+. +
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv--~~l~la~viVTHDl~V--arLla~rlmvmk~g~vv 231 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV--RELGLAVVIVTHDLAV--ARLLADRLMVMKQGQVV 231 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHH--HhcCceEEEEechhHH--HHHhhhcceeecCCCEe
Confidence 9999999999999999999999 999999999999999994 7789999999997766 8888999999987 6
Q ss_pred ccccccceeeE
Q 016817 292 GVSEISGVYDI 302 (382)
Q Consensus 292 ~~~~~~~v~~~ 302 (382)
..+-+..++++
T Consensus 232 e~GLTDrvLDD 242 (258)
T COG4107 232 ESGLTDRVLDD 242 (258)
T ss_pred ccccccccccC
Confidence 67767777754
No 334
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.2e-36 Score=287.50 Aligned_cols=199 Identities=15% Similarity=0.047 Sum_probs=150.1
Q ss_pred hhHHHHHHhhhh-----hhcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 47 PRLRVLREMERL-----ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 47 ~~~~~~~~~~~~-----~~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.+.++++.++. +.+...+.|+++|+++. ... +|+++||+|++||+++|+||||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~--~~~------vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV--GAP------VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccccccCCCCCeEEEEEEEEe--ccc------ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445555555432 22334567999999985 222 69999999999999999999999999999999999
Q ss_pred hc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc
Q 016817 122 LS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA 200 (382)
Q Consensus 122 ~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~ 200 (382)
++ ++|+|.++| .++|++|++.+++ .|+.+|+.+... . . ...+.++++.+
T Consensus 87 ~~p~~G~I~i~g-----------------------~i~yv~q~~~l~~-~tv~enl~~~~~-~--~---~~~~~~~l~~~ 136 (282)
T cd03291 87 LEPSEGKIKHSG-----------------------RISFSSQFSWIMP-GTIKENIIFGVS-Y--D---EYRYKSVVKAC 136 (282)
T ss_pred CCCCCcEEEECC-----------------------EEEEEeCcccccc-cCHHHHhhcccc-c--C---HHHHHHHHHHh
Confidence 99 899999876 3789999998887 599999864211 0 0 01111222223
Q ss_pred cccccc----------cccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhc-cCccccccCCCCe
Q 016817 201 LMKNDA----------EIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLF-SAPGLRKCNENPI 266 (382)
Q Consensus 201 ~L~~~~----------~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l-~~l~~~~~~g~ti 266 (382)
++.+.+ .++.+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.+ +.+ . .+.||
T Consensus 137 ~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~---~-~~~tI 212 (282)
T cd03291 137 QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL---M-ANKTR 212 (282)
T ss_pred CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh---h-CCCEE
Confidence 332111 124567999999999999999999999999999 99999999998754 555 2 47899
Q ss_pred EEEecCCCCChhhhhhhhhhhhhh
Q 016817 267 LILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 267 IiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|||++. +. .||++++|++
T Consensus 213 iiisH~~~~--~~-~~d~i~~l~~ 233 (282)
T cd03291 213 ILVTSKMEH--LK-KADKILILHE 233 (282)
T ss_pred EEEeCChHH--HH-hCCEEEEEEC
Confidence 999997665 64 6889988876
No 335
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1e-35 Score=274.66 Aligned_cols=212 Identities=14% Similarity=0.015 Sum_probs=166.7
Q ss_pred hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc
Q 016817 60 LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS 138 (382)
Q Consensus 60 ~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~ 138 (382)
.+..+++|+++||++.|+++. +|+|+|++|++||..+|+||||||||||+++++|.++ .+|.+.+.|+.....
T Consensus 25 ~~~~~~li~l~~v~v~r~gk~------iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~ 98 (257)
T COG1119 25 IEINEPLIELKNVSVRRNGKK------ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG 98 (257)
T ss_pred CCCCcceEEecceEEEECCEe------eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCC
Confidence 334567899999999996554 6999999999999999999999999999999999999 899999999865422
Q ss_pred ccceeehhhhhhhHhhhccceeeEe--CCCCChhhhhhhHHHHHhh-hh-cC-cc---ccccccccCccccccccccccc
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYD--SRGFNYNRVHEGLEELSSW-MS-EG-VH---HNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~--~~l~~~~tv~eni~~~~~~-~~-~~-~~---~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
.. . .++|+ +||+|.-. ....++.+++|.+....+. .+ .. .. ..+++..+++.+|+.+. .+++
T Consensus 99 ~~-------~-~elrk-~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-a~r~ 168 (257)
T COG1119 99 ET-------I-FELRK-RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-ADRP 168 (257)
T ss_pred cc-------h-HHHHH-HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-ccCc
Confidence 11 0 34665 89999653 2334456777766443221 11 11 11 22456678999999865 5599
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
..+||-||||||.|||||+.+|++||||| +||...+..+.+.|.+++ ....+.++|+||| ..+++-.+.+++++
T Consensus 169 ~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~-~~~~~~~ll~VtH--h~eEi~~~~th~ll 245 (257)
T COG1119 169 FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA-ASPGAPALLFVTH--HAEEIPPCFTHRLL 245 (257)
T ss_pred hhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHh-cCCCCceEEEEEc--chhhcccccceEEE
Confidence 99999999999999999999999999999 999999999999999985 2334789999999 66668887788777
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
+++
T Consensus 246 l~~ 248 (257)
T COG1119 246 LKE 248 (257)
T ss_pred eeC
Confidence 765
No 336
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.98 E-value=2.4e-35 Score=273.17 Aligned_cols=172 Identities=14% Similarity=0.100 Sum_probs=137.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee-eEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~-i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+|+|+||+|++|++++|+||||||||||+|+|+|+++ ++|+|. ++|..+ .+ .+++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~--------------------~~---~~~~ 58 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL--------------------PL---GANS 58 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee--------------------cc---cccc
Confidence 6999999999999999999999999999999999998 899997 665421 12 2456
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
.+|+.+|+.+|+.+....+ +....+....+.+.+++.+.. ++++.+||||||||++|||||+.+|+++|||| ++
T Consensus 59 ~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~l 135 (213)
T PRK15177 59 FILPGLTGEENARMMASLY--GLDGDEFSHFCYQLTQLEQCY-TDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTG 135 (213)
T ss_pred ccCCcCcHHHHHHHHHHHc--CCCHHHHHHHHHHHhChhHHh-hchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccC
Confidence 6788899999997654322 111111122233456776554 48999999999999999999999999999999 89
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+.+.+.+.. ++.|+|++|||+.. +..+||++++|++
T Consensus 136 D~~~~~~~~~~l~~~~----~~~~ii~vsH~~~~--~~~~~d~i~~l~~ 178 (213)
T PRK15177 136 DNATQLRMQAALACQL----QQKGLIVLTHNPRL--IKEHCHAFGVLLH 178 (213)
T ss_pred CHHHHHHHHHHHHHHh----hCCcEEEEECCHHH--HHHhcCeeEEEEC
Confidence 9999999999886542 34689999996665 8889999999876
No 337
>PLN03130 ABC transporter C family member; Provisional
Probab=99.98 E-value=1.2e-35 Score=340.78 Aligned_cols=225 Identities=18% Similarity=0.107 Sum_probs=179.5
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh------cCcCchhHHHHHhhhcccCC-eeeecCCcccCCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIP 96 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~nvs~~y~~~~-~~v~~~vL~~isl~i~ 96 (382)
.+..|+..+......+..+..+.+|+.++++.++... ....+.|+++|++|+|+... .+ +|+|+||+|+
T Consensus 566 ~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~----vL~~inl~i~ 641 (1622)
T PLN03130 566 VLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERP----TLSNINLDVP 641 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCc----eeeceeEEec
Confidence 4567888899999999999999999999987654311 11123699999999997532 22 5999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-cc-ceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~-G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
+|+.++|+||||||||||+++|.|+++ .+ |+|.+. ..|+||+|++.+|+ .|++|
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~-----------------------~~Iayv~Q~p~Lfn-gTIre 697 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR-----------------------GTVAYVPQVSWIFN-ATVRD 697 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc-----------------------CeEEEEcCccccCC-CCHHH
Confidence 999999999999999999999999999 88 899743 27999999999998 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
||.+.. . .++++..++++.++|.+++. ..| ..|||||||||+||||++.+|+|||||| +
T Consensus 698 NI~fg~-----~-~d~e~y~~vl~a~~L~~di~-~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSA 770 (1622)
T PLN03130 698 NILFGS-----P-FDPERYERAIDVTALQHDLD-LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770 (1622)
T ss_pred HHhCCC-----c-ccHHHHHHHHHHhCcHHHHH-hCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 996432 1 23456677777777765443 333 3499999999999999999999999999 9
Q ss_pred CCCCcchhhh-hhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATK-RLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~-~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+++.+.++ +.++... +|+|+|+|||++.. +. .+|+|++|++
T Consensus 771 LD~~~~~~I~~~~l~~~l----~~kTvIlVTH~l~~--l~-~aD~Ii~L~~ 814 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDEL----RGKTRVLVTNQLHF--LS-QVDRIILVHE 814 (1622)
T ss_pred cCHHHHHHHHHHHhhHHh----cCCEEEEEECCHhH--HH-hCCEEEEEeC
Confidence 9999988876 4566542 58999999995543 54 5778888876
No 338
>PLN03232 ABC transporter C family member; Provisional
Probab=99.98 E-value=1.6e-35 Score=338.94 Aligned_cols=227 Identities=18% Similarity=0.126 Sum_probs=179.9
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh------cCcCchhHHHHHhhhcccC-CeeeecCCcccCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDI 95 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~nvs~~y~~~-~~~v~~~vL~~isl~i 95 (382)
..+..|+..+......+.++..+.+|+.++++.++... ....+.|+++|++|+|+.. ..+ +|+|+||+|
T Consensus 565 ~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~----vL~~inl~i 640 (1495)
T PLN03232 565 AVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKP----TLSDINLEI 640 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCc----eeeeeEEEE
Confidence 35678899999999999999999999999997664311 1112368999999999753 222 599999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++|+.++|+||||||||||+++|.|+++ .+|.+.. +| ..|+||+|++.+|+ .|++|
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~---------------------~~-~~Iayv~Q~p~Lf~-gTIre 697 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV---------------------IR-GSVAYVPQVSWIFN-ATVRE 697 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE---------------------ec-CcEEEEcCcccccc-ccHHH
Confidence 9999999999999999999999999999 7887631 22 38999999999998 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
||.+.. ..++++..++++.+++.+++. ..| ..||||||||++||||++.+|+|||||| +
T Consensus 698 NI~fg~------~~~~e~~~~vl~~~~L~~di~-~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSa 770 (1495)
T PLN03232 698 NILFGS------DFESERYWRAIDVTALQHDLD-LLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770 (1495)
T ss_pred HhhcCC------ccCHHHHHHHHHHhCCHHHHH-hCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 996431 124456667777777755443 333 2499999999999999999999999999 9
Q ss_pred CCCCcchhhhhh-ccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATKRL-FSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~~~-l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+.+.+.+++. +.... +++|+|+|||++.. +. .+|+|++|++
T Consensus 771 LD~~t~~~I~~~~l~~~l----~~kT~IlvTH~~~~--l~-~aD~Ii~L~~ 814 (1495)
T PLN03232 771 LDAHVAHQVFDSCMKDEL----KGKTRVLVTNQLHF--LP-LMDRIILVSE 814 (1495)
T ss_pred cCHHHHHHHHHHHhhhhh----cCCEEEEEECChhh--HH-hCCEEEEEeC
Confidence 999999888654 55442 58999999995543 54 5788888876
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6e-35 Score=310.24 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=149.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
||+++||+++|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|... ..+
T Consensus 1 ~i~i~nls~~~g~~~------~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~------i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRRGVRV------LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQ------LAW 68 (638)
T ss_pred CEEEEEEEEEeCCce------eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE------EEE
Confidence 467899999996433 6999999999999999999999999999999999988 899999987520 111
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhH-------HHHHhhh---h--cCccccccccccCccccccccccccccC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL-------EELSSWM---S--EGVHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni-------~~~~~~~---~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
..+.........++|++|.+..+..++..... ..+.... . .......++.++++.+|+.+...++++.
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 11100000011455666544333333321110 0000000 0 0111234577789999996322348999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ +.|||+||||... +..+|+++++++
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------~~tviivsHd~~~--l~~~~d~i~~L~ 220 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------QGTLILISHDRDF--LDPIVDKIIHIE 220 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------CCeEEEEeCCHHH--HHHhcCEEEEEe
Confidence 999999999999999999999999999 99999999999998875 4699999997776 889999999998
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 221 ~ 221 (638)
T PRK10636 221 Q 221 (638)
T ss_pred C
Confidence 6
No 340
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.97 E-value=1.4e-34 Score=306.44 Aligned_cols=195 Identities=15% Similarity=0.053 Sum_probs=158.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+|+|+|+++++||+++|+||||||||||+++|+|..+ . +|+|.++|.++.. ..+++ .+|||+|
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~------------~~~~~-~i~yv~Q 106 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA------------KEMRA-ISAYVQQ 106 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH------------HHHhh-hceeecc
Confidence 6999999999999999999999999999999999987 3 7999999986421 11343 8999999
Q ss_pred eCCCCChhhhhhhHHHHHhhhhcC----ccccccccccCccccccccccccccC------CCccceeeecceeeeehhHH
Q 016817 163 DSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVSNIA 232 (382)
Q Consensus 163 ~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~~L~~~~~~~~~~------~LSGGqkQRvaIAraL~~~P 232 (382)
++.+++.+||+||+.+.+...... ....+++.++++.+|+.+..+ ..+. +|||||||||+|||+|+.+|
T Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-t~vg~~~~~~~LSgGqrkRvsia~aL~~~p 185 (617)
T TIGR00955 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-TRIGVPGRVKGLSGGERKRLAFASELLTDP 185 (617)
T ss_pred ccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCc-CccCCCCCCCCcCcchhhHHHHHHHHHcCC
Confidence 999999999999998765321111 112245778899999986544 6665 59999999999999999999
Q ss_pred HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 233 EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 233 ~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
++|+||| +||+.+...+++.|++++ +.|+|||+++|++.. ++.+.+|++++|++ +..|+++++
T Consensus 186 ~vlllDEPtsgLD~~~~~~l~~~L~~l~---~~g~tvi~~~hq~~~-~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 186 PLLFCDEPTSGLDSFMAYSVVQVLKGLA---QKGKTIICTIHQPSS-ELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred CEEEeeCCCcchhHHHHHHHHHHHHHHH---hCCCEEEEEeCCCCH-HHHHHhceEEEeeCCeEEEECCHHHH
Confidence 9999999 999999999999999983 358999999996542 36778999999887 444554444
No 341
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=3.3e-35 Score=256.32 Aligned_cols=138 Identities=18% Similarity=0.241 Sum_probs=123.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
++++|++++|++.. +|+++||++++||+++|+||||||||||+++|+|+++ ++|+|+++|+
T Consensus 1 l~~~~l~~~~~~~~------~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------------ 62 (144)
T cd03221 1 IELENLSKTYGGKL------LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------ 62 (144)
T ss_pred CEEEEEEEEECCce------EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------------
Confidence 35678999996432 5999999999999999999999999999999999999 8999999885
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
..++|++| ||+||+||++||
T Consensus 63 ---------~~i~~~~~---------------------------------------------------lS~G~~~rv~la 82 (144)
T cd03221 63 ---------VKIGYFEQ---------------------------------------------------LSGGEKMRLALA 82 (144)
T ss_pred ---------EEEEEEcc---------------------------------------------------CCHHHHHHHHHH
Confidence 26888888 999999999999
Q ss_pred eeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|+++|||| +||+.++..+.+.|+++ +.|+|++||+++. +..+||+++++++
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~------~~til~~th~~~~--~~~~~d~v~~l~~ 142 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY------PGTVILVSHDRYF--LDQVATKIIELED 142 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEECCHHH--HHHhCCEEEEEeC
Confidence 99999999999999 99999999999999886 3699999995554 8888999888753
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=9.1e-35 Score=311.19 Aligned_cols=190 Identities=14% Similarity=0.070 Sum_probs=152.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|+++.|+++. . +|+|+||+|++|++++|+||||||||||+|+|+|+++ ++|+|.+++.
T Consensus 506 ~~~L~~~~ls~~y~~~~-~----il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--------- 571 (718)
T PLN03073 506 PPIISFSDASFGYPGGP-L----LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--------- 571 (718)
T ss_pred CceEEEEeeEEEeCCCC-e----eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---------
Confidence 35899999999996432 2 5999999999999999999999999999999999999 8999987642
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+||++|++. ..+++.++........ ......+.+.++++.+++.+...++++.+|||||||||
T Consensus 572 ------------~~igyv~Q~~~--~~l~~~~~~~~~~~~~-~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv 636 (718)
T PLN03073 572 ------------VRMAVFSQHHV--DGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 636 (718)
T ss_pred ------------eeEEEEecccc--ccCCcchhHHHHHHHh-cCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHH
Confidence 27999999852 3345555532211111 11122355677899999974333489999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|.+. .| |||+||||++. +..+||+++++++
T Consensus 637 aLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~g-tvIivSHd~~~--i~~~~drv~~l~~ 699 (718)
T PLN03073 637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-----QG-GVLMVSHDEHL--ISGSVDELWVVSE 699 (718)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-EEEEEECCHHH--HHHhCCEEEEEEC
Confidence 99999999999999999 99999999998888764 34 99999997776 8899999999875
No 343
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=4.2e-35 Score=336.05 Aligned_cols=228 Identities=14% Similarity=0.087 Sum_probs=178.5
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhhc--------C-cCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALI--------A-PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
.+..|+..+......+..+..+.+|+.++++.++.... . ....++++|++++|+....+ +|+|+||+
T Consensus 585 ~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~l~~isl~ 660 (1522)
T TIGR00957 585 ILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPP----TLNGITFS 660 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCc----eeeeeEEE
Confidence 35679999999999999999999999999876543110 0 11379999999999754322 59999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++|++++|+||||||||||+++|+|+++ .+|+|.++| .++||+|++.+|+ .|++
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------------~i~yv~Q~~~l~~-~Ti~ 716 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-----------------------SVAYVPQQAWIQN-DSLR 716 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----------------------EEEEEcCCccccC-CcHH
Confidence 99999999999999999999999999999 899999875 4899999999886 8999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccc-----------ccccccccCCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMK-----------NDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
||+.+.. .. +.++..++++.+++. .... ....+|||||||||+||||++.+|+++||||
T Consensus 717 eNI~~g~-----~~-~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 717 ENILFGK-----AL-NEKYYQQVLEACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred HHhhcCC-----cc-CHHHHHHHHHHhCCHHHHHhcCCCCCceec-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9996532 11 111222222222211 1222 5677899999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||+.+.+.+++.+.+.. ...+|+|+|+|||++.. +.. +|+|++|++
T Consensus 790 aLD~~~~~~i~~~l~~~~-~~~~~~tvIlvTH~~~~--l~~-~D~ii~l~~ 836 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPE-GVLKNKTRILVTHGISY--LPQ-VDVIIVMSG 836 (1522)
T ss_pred ccCHHHHHHHHHHHhhhh-hhhcCCEEEEEeCChhh--hhh-CCEEEEecC
Confidence 999999999999986531 01257999999997665 665 788888876
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.6e-34 Score=260.31 Aligned_cols=140 Identities=15% Similarity=0.070 Sum_probs=122.1
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhh
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEE 148 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~ 148 (382)
.|++++|++. . ++++ +|+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.
T Consensus 4 ~~l~~~~~~~--~----~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--------------- 61 (177)
T cd03222 4 PDCVKRYGVF--F----LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI--------------- 61 (177)
T ss_pred CCeEEEECCE--E----EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE---------------
Confidence 5788999543 2 4888 49999999999999999999999999999999 8999999885
Q ss_pred hhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee
Q 016817 149 HNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV 228 (382)
Q Consensus 149 ~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL 228 (382)
.++|++|++. ||||||||++|||||
T Consensus 62 -------~i~~~~q~~~------------------------------------------------LSgGq~qrv~laral 86 (177)
T cd03222 62 -------TPVYKPQYID------------------------------------------------LSGGELQRVAIAAAL 86 (177)
T ss_pred -------EEEEEcccCC------------------------------------------------CCHHHHHHHHHHHHH
Confidence 4677777531 999999999999999
Q ss_pred hhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 229 SNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 229 ~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.+|++++||| +||+.++..+.+.++++. ++.+.|||+||||++. +..+||+++++++
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~~~~tiiivsH~~~~--~~~~~d~i~~l~~ 147 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLS--EEGKKTALVVEHDLAV--LDYLSDRIHVFEG 147 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HcCCCEEEEEECCHHH--HHHhCCEEEEEcC
Confidence 99999999999 999999999999999973 3334899999996655 8888999999976
No 345
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=9.4e-35 Score=321.30 Aligned_cols=248 Identities=14% Similarity=0.124 Sum_probs=204.5
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhh-h-----h-c----CcCchhHHHHHhhhcccCCeeeecCCcccCCC
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL-A-----L-I----APDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~----~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl 93 (382)
++.-+.-+++....+++...+.+|+.+..+++++ + . + |..+.|+++|++.+|..+... ||+||||
T Consensus 1086 lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~----VLk~is~ 1161 (1381)
T KOG0054|consen 1086 LTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPL----VLKGISF 1161 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcc----hhcCceE
Confidence 4444555667777888899999999999886543 0 1 1 235689999999999877543 6999999
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRV 172 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv 172 (382)
+|++||.+||||.+|||||||+++|.++.. .+|+|.|||.|+.+... ..+|+ +++.+||||.||. .|+
T Consensus 1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL---------~dLRs-rlsIIPQdPvLFs-GTv 1230 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGL---------HDLRS-RLSIIPQDPVLFS-GTV 1230 (1381)
T ss_pred EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccH---------HHHHh-cCeeeCCCCceec-Ccc
Confidence 999999999999999999999999999999 89999999998875542 33776 9999999999998 899
Q ss_pred hhhHHHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh--
Q 016817 173 HEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 173 ~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE-- 239 (382)
+.|++-. ....++++.++|+.++|.+... +.|. .+|-||||-++|||||+++++||+|||
T Consensus 1231 R~NLDPf------~e~sD~~IW~ALe~~~Lk~~v~-~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1231 RFNLDPF------DEYSDDEIWEALERCQLKDVVS-SLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred ccccCcc------cccCHHHHHHHHHHhChHHHHh-hCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 9999622 2345677888999888876554 4443 499999999999999999999999999
Q ss_pred -cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
++|+++-..|++.|++-. +++|||.|.| ++.++.+ +|+|++|++ ++.+.|.+.++
T Consensus 1304 AsVD~~TD~lIQ~tIR~~F----~dcTVltIAH--Rl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1304 ASVDPETDALIQKTIREEF----KDCTVLTIAH--RLNTVMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred ccCChHHHHHHHHHHHHHh----cCCeEEEEee--ccchhhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 999999999999999863 6899999999 8877986 566777765 66777777664
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=4.7e-34 Score=303.50 Aligned_cols=199 Identities=14% Similarity=0.179 Sum_probs=145.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|... ..+
T Consensus 3 ~l~i~~ls~~~~~~~------il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~------~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFSDAP------LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLI------VAR 70 (635)
T ss_pred EEEEeeEEEEeCCce------eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCE------EEE
Confidence 688999999996432 6999999999999999999999999999999999998 899999987410 000
Q ss_pred hhhhhhhHhhhccceeeEeCC-----CCChhh-------------hhhhHHHHHhh---hh--cCccccccccccCcccc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSR-----GFNYNR-------------VHEGLEELSSW---MS--EGVHHNQRCLRSDDCAL 201 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~-----l~~~~t-------------v~eni~~~~~~---~~--~~~~~~~~~~~~l~~~~ 201 (382)
..+. . .+ ..+++++|... ++...+ ..+++...... +. .+.....++.++++.+|
T Consensus 71 l~q~-~-~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 71 LQQD-P-PR-NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred eccC-C-CC-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 0000 0 01 12334443210 000011 12233221111 10 01112345677888999
Q ss_pred ccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChh
Q 016817 202 MKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTE 278 (382)
Q Consensus 202 L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~ 278 (382)
+.. ++++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ . .|||+||||... +
T Consensus 148 l~~---~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-----~-~tvlivsHd~~~--l 216 (635)
T PRK11147 148 LDP---DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-----Q-GSIIFISHDRSF--I 216 (635)
T ss_pred CCC---CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-----C-CEEEEEeCCHHH--H
Confidence 862 48999999999999999999999999999999 99999999999999987 2 599999997776 8
Q ss_pred hhhhhhhhhhhh
Q 016817 279 ERLDARLKICEY 290 (382)
Q Consensus 279 ~~~~d~v~ll~~ 290 (382)
..+|++|+++++
T Consensus 217 ~~~~d~i~~L~~ 228 (635)
T PRK11147 217 RNMATRIVDLDR 228 (635)
T ss_pred HHhcCeEEEEEC
Confidence 889999999976
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=3.5e-34 Score=301.33 Aligned_cols=190 Identities=16% Similarity=0.070 Sum_probs=149.2
Q ss_pred HHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee-----------eEeecCCCc
Q 016817 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGNS 138 (382)
Q Consensus 71 nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~-----------i~G~~i~~~ 138 (382)
+++++|+.+. . +|++++ .+++|+++||+||||||||||+|+|+|+++ ++|+|. ++|+++...
T Consensus 78 ~~~~~yg~~~-~----~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 78 EPVHRYGVNG-F----KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred CceEEecCCc-e----eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH
Confidence 4899997532 1 599999 899999999999999999999999999998 899997 788764311
Q ss_pred ccceeehhhhhhhHhhhccceeeEe----CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCC
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYD----SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~----~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 214 (382)
. ......+ ..+++.+|. +.+|. .|+.+++... ...+++.++++.+++.+.. ++.+.+|
T Consensus 152 ~-------~~~~~~~-~~~~~~~q~~~~~p~~~~-~tv~e~l~~~--------~~~~~~~~~l~~l~l~~~~-~~~~~~L 213 (590)
T PRK13409 152 F-------KKLYNGE-IKVVHKPQYVDLIPKVFK-GKVRELLKKV--------DERGKLDEVVERLGLENIL-DRDISEL 213 (590)
T ss_pred H-------HHHhccC-cceeecccchhhhhhhhc-chHHHHHHhh--------hHHHHHHHHHHHcCCchhh-cCChhhC
Confidence 0 0100001 134444554 43443 3888877421 1224567788899998655 4999999
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+||+||+.+|++||||| +||+.++..+.+.|+++ .+ |+|||+||||++. +..++|+++++++
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l---~~-g~tvIivsHd~~~--l~~~~D~v~vl~~ 286 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL---AE-GKYVLVVEHDLAV--LDYLADNVHIAYG 286 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 9999999999999999999999999 99999999999999998 44 8999999996665 8889999998864
No 348
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=7.7e-34 Score=262.28 Aligned_cols=204 Identities=13% Similarity=0.072 Sum_probs=162.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
..++.++.+.+..... ..+|+||||++.+||.+||||+||||||||+|+|+|.++ ++|+|.++|+-. ..
T Consensus 24 ~~~~~~~~~~~~~~~~---~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~----~l--- 93 (249)
T COG1134 24 KKRLKGLAKGGRKVAE---FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA----PL--- 93 (249)
T ss_pred HHHHHHHhcCCCCcce---EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe----hh---
Confidence 4455566555532221 237999999999999999999999999999999999999 899999999721 00
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
-.+|.=|| |.+|.+||+.+....++ .....+++.++..+..+|.++++ .++.++|.||+-|++
T Consensus 94 ----------i~lg~Gf~-----pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-~PvktYSSGM~aRLa 157 (249)
T COG1134 94 ----------IELGAGFD-----PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-QPVKTYSSGMYARLA 157 (249)
T ss_pred ----------hhcccCCC-----cccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-CchhhccHHHHHHHH
Confidence 02222223 56899999987765554 23334566778888999998876 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
+|-|...+|+|||+|| ..|+.-++.-.+.+.++ .+++.|||+||||++. +.++||+++++++ ...++++
T Consensus 158 Fsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~---~~~~~tiv~VSHd~~~--I~~~Cd~~i~l~~G~i~~~G~~~ 232 (249)
T COG1134 158 FSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL---VEKNKTIVLVSHDLGA--IKQYCDRAIWLEHGQIRMEGSPE 232 (249)
T ss_pred HhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH---HHcCCEEEEEECCHHH--HHHhcCeeEEEeCCEEEEcCCHH
Confidence 9999999999999999 78999899888999887 4567999999997777 9999999999987 4455555
Q ss_pred cee
Q 016817 298 GVY 300 (382)
Q Consensus 298 ~v~ 300 (382)
++.
T Consensus 233 ~vi 235 (249)
T COG1134 233 EVI 235 (249)
T ss_pred HHH
Confidence 554
No 349
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=1.4e-33 Score=320.71 Aligned_cols=202 Identities=14% Similarity=0.062 Sum_probs=163.7
Q ss_pred hhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc----ccceeeeEeecCCCcc
Q 016817 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 66 ~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~----~~G~I~i~G~~i~~~~ 139 (382)
+++++||+++|+.+ .+. +|+|||+++++||++||+||||||||||+++|+|+.+ ++|+|.+||+++..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~----iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-- 832 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRV----ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-- 832 (1394)
T ss_pred eEEEEeeEEEecCCCCCcE----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh--
Confidence 46889999998532 222 6999999999999999999999999999999999985 46999999986521
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Ccc---ccccccccCccccccccccccccC---
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVH---HNQRCLRSDDCALMKNDAEIDDLK--- 212 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~---~~~~~~~~l~~~~L~~~~~~~~~~--- 212 (382)
.+|+ .+|||+|++.+++.+||+||+.+.+..... ... ..++++++++.+++.+..+ +.++
T Consensus 833 -----------~~~~-~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d-~~v~~~~ 899 (1394)
T TIGR00956 833 -----------SFQR-SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYAD-AVVGVPG 899 (1394)
T ss_pred -----------hhhc-ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCC-CeeCCCC
Confidence 1343 899999998888889999999875432111 111 1245678899999986554 7776
Q ss_pred -CCccceeeecceeeeehhHHH-HHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 213 -SSPKYVLRRVDFAMVVSNIAE-IYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 213 -~LSGGqkQRvaIAraL~~~P~-iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+|||||||||+||++|+.+|+ +|+||| +||+.++..+++.|+++ .++|+|||++||+++. .+.+.+|++++
T Consensus 900 ~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l---a~~g~tvI~t~H~~~~-~~~~~~D~vl~ 975 (1394)
T TIGR00956 900 EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL---ADHGQAILCTIHQPSA-ILFEEFDRLLL 975 (1394)
T ss_pred CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH---HHcCCEEEEEecCCCH-HHHHhcCEEEE
Confidence 799999999999999999997 999999 99999999999999998 3468999999996653 13456888888
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 976 L~~ 978 (1394)
T TIGR00956 976 LQK 978 (1394)
T ss_pred EcC
Confidence 864
No 350
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.4e-33 Score=243.26 Aligned_cols=217 Identities=13% Similarity=0.032 Sum_probs=171.5
Q ss_pred hhHHHHHhhhcccCCe-eeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSGDF-WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~-~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+.++|++|+|.-... -+..++|+++||+|+.||++++=||||||||||+|+|.|-|. ++|+|++.-..- .-+...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~--~vdl~~ 81 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGE--WVDLVT 81 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcc--hhhhhc
Confidence 5778999999953211 122347999999999999999999999999999999999999 999999965421 111223
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+.+.-..|++.||||.|-....|..+..+.+.+.....+ .......++..++.++++.+.+..-.|.++||||||||
T Consensus 82 a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 82 AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 33455556787899999998777787777777766543322 11222356677889999988777688999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
.|||.++.+=+|||||| +||..++..+.++|.+- +.+|..+|=|-||-+. -...|||++-+.
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~---Ka~GaAlvGIFHDeev--re~vadR~~~~~ 226 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA---KARGAALVGIFHDEEV--REAVADRLLDVS 226 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHH---HhcCceEEEeeccHHH--HHHHhhheeecc
Confidence 99999999999999999 99999999999999996 6789999999997655 555788887664
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.8e-33 Score=253.29 Aligned_cols=149 Identities=16% Similarity=0.072 Sum_probs=120.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+|+|+||+|++|++++|+||||||||||+|+|.+ ++|+|.++|.... .++..++|++|
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~~---------------~~~~~~~~~~q---- 67 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLPK---------------FSRNKLIFIDQ---- 67 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCcccc---------------cccccEEEEhH----
Confidence 6999999999999999999999999999999853 6899998765210 11124667665
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhH--HHHHHHHh---cC
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNI--AEIYKALK---AG 241 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~--P~iLLLDE---~L 241 (382)
.++++.+++.....++++.+||||||||++|||||+.+ |++||||| +|
T Consensus 68 ---------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ---------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ---------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 11344455654323488999999999999999999999 99999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.++..+.+.|+++ .+.|.|||+|||+++. + ..||++++|++
T Consensus 121 D~~~~~~l~~~l~~~---~~~g~tvIivSH~~~~--~-~~~d~i~~l~~ 163 (176)
T cd03238 121 HQQDINQLLEVIKGL---IDLGNTVILIEHNLDV--L-SSADWIIDFGP 163 (176)
T ss_pred CHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--H-HhCCEEEEECC
Confidence 999999999999997 3368999999997654 6 46899888865
No 352
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-33 Score=256.49 Aligned_cols=212 Identities=12% Similarity=0.037 Sum_probs=165.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++|++.+..+. +. +|++|||+|++||+.+|+||||||||||.++|+|.- . ++|+|.|+|+++.+++.
T Consensus 3 ~L~I~dLhv~v~~~-ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~-- 75 (251)
T COG0396 3 MLEIKDLHVEVEGK-KE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP-- 75 (251)
T ss_pred eeEEeeeEEEecCc-hh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCH--
Confidence 67889998888654 12 799999999999999999999999999999999986 4 69999999998876543
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC----ccccccccccCccccccccccccccC-CCccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCALMKNDAEIDDLK-SSPKY 217 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~~L~~~~~~~~~~-~LSGG 217 (382)
.++ .| ..+.+-||.|.-++-.++.+.+.......... .....++++.++.+++.+...+|+++ .+|||
T Consensus 76 ----~ER--Ar-~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGG 148 (251)
T COG0396 76 ----DER--AR-AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGG 148 (251)
T ss_pred ----hHH--Hh-cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcc
Confidence 222 33 37889999998888788777665433221111 01234567788899998755558776 49999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhh-hhhhhh-hh--
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLD-ARLKIC-EY-- 290 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~-d~v~ll-~~-- 290 (382)
||+|..|+.+++.+|++.|||| +||..+-+.+-+.+..+ ++.|.++++|||..++ +..+. |++.+| ++
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~l---r~~~~~~liITHy~rl--l~~i~pD~vhvl~~GrI 223 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL---REEGRGVLIITHYQRL--LDYIKPDKVHVLYDGRI 223 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHH---hcCCCeEEEEecHHHH--HhhcCCCEEEEEECCEE
Confidence 9999999999999999999999 99999999999999998 5679999999997666 44442 555555 44
Q ss_pred cccccc
Q 016817 291 LGVSEI 296 (382)
Q Consensus 291 ~~~~~~ 296 (382)
+.+|.+
T Consensus 224 v~sG~~ 229 (251)
T COG0396 224 VKSGDP 229 (251)
T ss_pred EecCCH
Confidence 555544
No 353
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=4.3e-33 Score=259.85 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=150.9
Q ss_pred CCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceee-Ee
Q 016817 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV-YD 163 (382)
Q Consensus 86 ~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~-Q~ 163 (382)
++++|+||+|++|++++++|||||||||++|+|.|++. ++|.|.++|.+..+ +...+- +++++|+ |.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~----------~~~~~~-~~~~~v~gqk 106 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR----------RREEYL-RSIGLVMGQK 106 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch----------hHHHHH-HHHHHHhhhh
Confidence 37999999999999999999999999999999999998 89999999986432 111122 2677775 33
Q ss_pred CCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
..+...+.+.+.+......+.-+ ..-.++....-+.+++++++. .+++.||-|||.|+.||.||+++|++|+|||
T Consensus 107 ~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk-~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 107 LQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK-WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred heeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhh-hhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 44444445555443332222211 122345566777889988876 9999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||...+..+.+.+++.+ ++++.||+++|| .++.+...|++|++++.
T Consensus 186 gLDV~aq~~ir~Flke~n--~~~~aTVllTTH--~~~di~~lc~rv~~I~~ 232 (325)
T COG4586 186 GLDVNAQANIREFLKEYN--EERQATVLLTTH--IFDDIATLCDRVLLIDQ 232 (325)
T ss_pred CcchhHHHHHHHHHHHHH--HhhCceEEEEec--chhhHHHhhhheEEeeC
Confidence 999999999999999994 678999999999 55559999999999987
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=1.4e-33 Score=322.86 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=171.6
Q ss_pred cch-hhhhhhccCCCCccccchhHHHHHHhhhhhhc---CcCchhHHHHHhhhcccCC------------------e--e
Q 016817 27 AKF-DECVKLKLDLPNVSTLTPRLRVLREMERLALI---APDGLNELRHKFLSYRSGD------------------F--W 82 (382)
Q Consensus 27 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~i~nvs~~y~~~~------------------~--~ 82 (382)
.|+ ..+..+...+.++.++.+|+.+++..++.... .....++++|+++.|+... . .
T Consensus 349 ~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (1490)
T TIGR01271 349 MTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDG 428 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEecceEecCCcccccccccccccccccccccccc
Confidence 455 35777777788889999999999987653211 1123478888888884210 0 0
Q ss_pred -----e---ecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHh
Q 016817 83 -----I---PIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMR 153 (382)
Q Consensus 83 -----v---~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r 153 (382)
+ ..++|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 429 ~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------------- 487 (1490)
T TIGR01271 429 LFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------------- 487 (1490)
T ss_pred ccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------------------
Confidence 0 0136999999999999999999999999999999999999 899999876
Q ss_pred hhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccc-----------ccccccCCCccceeeec
Q 016817 154 SLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-----------AEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 154 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~~LSGGqkQRv 222 (382)
.++|++|++.+|+ .|++||+.+... + +.++..++++..+|.+. +. ..+..|||||||||
T Consensus 488 --~iayv~Q~~~l~~-~Ti~eNI~~g~~-~-----~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg-~~g~~LSgGqkqRi 557 (1490)
T TIGR01271 488 --RISFSPQTSWIMP-GTIKDNIIFGLS-Y-----DEYRYTSVIKACQLEEDIALFPEKDKTVLG-EGGITLSGGQRARI 557 (1490)
T ss_pred --EEEEEeCCCccCC-ccHHHHHHhccc-c-----chHHHHHHHHHHhHHHHHHhcccccccccc-CcCCCcCHHHHHHH
Confidence 4899999999998 699999975421 1 11122223333333221 22 45678999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhh-ccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRL-FSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~-l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||||++.+|+++|||| +||+.++..+++. +..+. +|+|+|+|||+++. +. .||+|++|++
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~----~~~tvilvtH~~~~--~~-~ad~ii~l~~ 622 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM----SNKTRILVTSKLEH--LK-KADKILLLHE 622 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCCeEEEEeCChHH--HH-hCCEEEEEEC
Confidence 99999999999999999 9999999999975 56652 58999999997665 65 4889998876
No 355
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=9e-33 Score=313.83 Aligned_cols=206 Identities=12% Similarity=0.037 Sum_probs=162.5
Q ss_pred hhHHHHHhhhcccCCe-------eeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecC
Q 016817 66 LNELRHKFLSYRSGDF-------WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSS 135 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~-------~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i 135 (382)
.+.++||++.+..... .-...+|+|||+++++|++++|+||||||||||+++|+|..+ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5788898887742110 000126999999999999999999999999999999999875 389999999854
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCcc---ccccccccCcccccccccccccc
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVH---HNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~---~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
.. ...++ .+|||+|++.+++.+||+||+.+.+.... .... ..+.++++++.++|.+..+ +.+
T Consensus 947 ~~------------~~~~~-~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~-~~v 1012 (1470)
T PLN03140 947 KQ------------ETFAR-ISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-AIV 1012 (1470)
T ss_pred Ch------------HHhhh-heEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhC-Ccc
Confidence 21 11333 79999999989999999999987542211 1111 1234677889999986543 664
Q ss_pred -----CCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhh
Q 016817 212 -----KSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDA 283 (382)
Q Consensus 212 -----~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d 283 (382)
.+|||||||||+||++|+.+|++|+||| +||+.++..+++.|+++ .+.|+|||++||+++. ++...+|
T Consensus 1013 g~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l---~~~g~tVI~t~Hq~~~-~i~~~~D 1088 (1470)
T PLN03140 1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT---VDTGRTVVCTIHQPSI-DIFEAFD 1088 (1470)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCCCH-HHHHhCC
Confidence 5899999999999999999999999999 99999999999999998 3468999999997663 2567889
Q ss_pred hhhhhh
Q 016817 284 RLKICE 289 (382)
Q Consensus 284 ~v~ll~ 289 (382)
++++|+
T Consensus 1089 ~vllL~ 1094 (1470)
T PLN03140 1089 ELLLMK 1094 (1470)
T ss_pred EEEEEc
Confidence 999986
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.4e-33 Score=245.52 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=126.9
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
++|+++.|.+.. +++++||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|.++....
T Consensus 2 ~~~~~~~~~~~~------~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-------- 67 (157)
T cd00267 2 IENLSFRYGGRT------ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-------- 67 (157)
T ss_pred eEEEEEEeCCee------eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------
Confidence 567888885432 5999999999999999999999999999999999999 8999999998654221
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV 227 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra 227 (382)
....+ ..++|++| |||||+||++||||
T Consensus 68 -~~~~~-~~i~~~~q---------------------------------------------------lS~G~~~r~~l~~~ 94 (157)
T cd00267 68 -LEELR-RRIGYVPQ---------------------------------------------------LSGGQRQRVALARA 94 (157)
T ss_pred -HHHHH-hceEEEee---------------------------------------------------CCHHHHHHHHHHHH
Confidence 01122 37888888 99999999999999
Q ss_pred ehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 228 VSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 228 L~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
++.+|++++||| +||+.++..+.+.|.++. +.+.|+|++||+++. +..+||+++.++
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~---~~~~tii~~sh~~~~--~~~~~d~i~~l~ 154 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELA---EEGRTVIIVTHDPEL--AELAADRVIVLK 154 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH---HCCCEEEEEeCCHHH--HHHhCCEEEEEe
Confidence 999999999999 999999999999999873 347899999996555 888888887765
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=1.2e-32 Score=312.97 Aligned_cols=190 Identities=15% Similarity=0.033 Sum_probs=152.3
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh----c-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceee
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL----S-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV 161 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~----~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~ 161 (382)
+|+|+|+++++||+++|+||||||||||+|+|+|+. . .+|+|.++|+++.+.. ...| +.++|++
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~----------~~~r-~~i~yv~ 144 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK----------KHYR-GDVVYNA 144 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH----------hhcC-ceeEEec
Confidence 699999999999999999999999999999999986 3 6999999998653211 1123 3799999
Q ss_pred EeCCCCChhhhhhhHHHHHhhhhc-----Ccccc---cc-ccccCcccccccccc----ccccCCCccceeeecceeeee
Q 016817 162 YDSRGFNYNRVHEGLEELSSWMSE-----GVHHN---QR-CLRSDDCALMKNDAE----IDDLKSSPKYVLRRVDFAMVV 228 (382)
Q Consensus 162 Q~~~l~~~~tv~eni~~~~~~~~~-----~~~~~---~~-~~~~l~~~~L~~~~~----~~~~~~LSGGqkQRvaIAraL 228 (382)
|+..+++.+||+|++.+.+..... ....+ ++ ++.+++.+||.+..+ +..+.+|||||||||+||++|
T Consensus 145 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL 224 (1394)
T TIGR00956 145 ETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS 224 (1394)
T ss_pred cccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHH
Confidence 999999999999999875432111 11111 12 245788899976433 234678999999999999999
Q ss_pred hhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 229 SNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 229 ~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.+|++|+||| +||+.++..+.+.|++++ ++.|+|||+++|++. +++.+++|++++|++
T Consensus 225 ~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la--~~~g~tvii~~Hq~~-~~i~~l~D~v~~L~~ 286 (1394)
T TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSA--NILDTTPLVAIYQCS-QDAYELFDKVIVLYE 286 (1394)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH--HhcCCEEEEEecCCC-HHHHHhhceEEEEeC
Confidence 99999999999 999999999999999984 445899999999653 237788999999876
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=5.8e-32 Score=307.29 Aligned_cols=188 Identities=13% Similarity=0.032 Sum_probs=153.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+|+|+|+.|++||+++|+||||||||||||+|+|+++ + +|+|.++|+++.+.. .| +.++|++|
T Consensus 180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~------------~~-~~i~yv~Q 246 (1470)
T PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV------------PR-KTSAYISQ 246 (1470)
T ss_pred eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc------------cc-ceeEEecc
Confidence 7999999999999999999999999999999999987 6 899999998653221 12 37999999
Q ss_pred eCCCCChhhhhhhHHHHHhhhhcCc--------ccc---------------------------ccccccCccccccccc-
Q 016817 163 DSRGFNYNRVHEGLEELSSWMSEGV--------HHN---------------------------QRCLRSDDCALMKNDA- 206 (382)
Q Consensus 163 ~~~l~~~~tv~eni~~~~~~~~~~~--------~~~---------------------------~~~~~~l~~~~L~~~~- 206 (382)
+..+++.+||+|++.+.+...+.+. ..+ ..++.+++.+||.+..
T Consensus 247 ~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~ 326 (1470)
T PLN03140 247 NDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKD 326 (1470)
T ss_pred cccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccC
Confidence 9999999999999987653221000 000 0124567788997532
Q ss_pred ---cccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh
Q 016817 207 ---EIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280 (382)
Q Consensus 207 ---~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~ 280 (382)
.++.+.+|||||||||+||++|+.+|++|+||| +||+.++..+.+.|++++ +..|+|+|+++|++. .++..
T Consensus 327 t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la--~~~g~Tviis~Hqp~-~~i~~ 403 (1470)
T PLN03140 327 TIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIV--HLTEATVLMSLLQPA-PETFD 403 (1470)
T ss_pred ceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHH--HhcCCEEEEEecCCC-HHHHH
Confidence 246788999999999999999999999999999 999999999999999984 445899999999653 23778
Q ss_pred hhhhhhhhhh
Q 016817 281 LDARLKICEY 290 (382)
Q Consensus 281 ~~d~v~ll~~ 290 (382)
++|+|++|++
T Consensus 404 lfD~vilL~~ 413 (1470)
T PLN03140 404 LFDDIILLSE 413 (1470)
T ss_pred HhheEEEeeC
Confidence 8999999876
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=3.3e-32 Score=281.08 Aligned_cols=189 Identities=15% Similarity=0.141 Sum_probs=157.9
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|.++|++++|++.. +|+++||+|.+|+.+||||+||||||||||+|+|... ++|+|...+.
T Consensus 2 ~~i~~~~ls~~~g~~~------l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---------- 65 (530)
T COG0488 2 SMITLENLSLAYGDRP------LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---------- 65 (530)
T ss_pred ceEEEeeeEEeeCCce------eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------
Confidence 3688999999995443 5999999999999999999999999999999999998 8999998653
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-------------------------------cCcccccc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-------------------------------EGVHHNQR 192 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-------------------------------~~~~~~~~ 192 (382)
.++||+.|++.+.+..||.+.+........ .+...+.+
T Consensus 66 -----------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 134 (530)
T COG0488 66 -----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134 (530)
T ss_pred -----------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence 279999999999888888886644321100 00011234
Q ss_pred ccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEE
Q 016817 193 CLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILIL 269 (382)
Q Consensus 193 ~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIii 269 (382)
+..++.-+|+.+. ++++.+||||||.||+||+||+.+|++||||| .||..+..-+.+.|.+. .| |+|+|
T Consensus 135 ~~~~L~gLg~~~~--~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-----~g-tviiV 206 (530)
T COG0488 135 AEEALLGLGFPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-----PG-TVIVV 206 (530)
T ss_pred HHHHHhcCCCCcc--cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-----CC-cEEEE
Confidence 5566777788755 48999999999999999999999999999999 99999999999999987 57 99999
Q ss_pred ecCCCCChhhhhhhhhhhhhh
Q 016817 270 THGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 270 THd~~l~~~~~~~d~v~ll~~ 290 (382)
|||-.+ ..++|++|+-++.
T Consensus 207 SHDR~F--Ld~V~t~I~~ld~ 225 (530)
T COG0488 207 SHDRYF--LDNVATHILELDR 225 (530)
T ss_pred eCCHHH--HHHHhhheEEecC
Confidence 998777 8899999998876
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=8.8e-33 Score=295.92 Aligned_cols=211 Identities=10% Similarity=0.029 Sum_probs=152.9
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh----cccceeeeEeecCCCccc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL----SRSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~----~~~G~I~i~G~~i~~~~~ 140 (382)
.+|+++|++++|++.. +|+|+||+|++|+++|||||||||||||||+|+|.. +++|+|.+.++.+... .
T Consensus 176 ~~I~i~nls~~y~~~~------ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~-~ 248 (718)
T PLN03073 176 KDIHMENFSISVGGRD------LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGD-D 248 (718)
T ss_pred eeEEEceEEEEeCCCE------EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCC-C
Confidence 4799999999996433 599999999999999999999999999999999864 3689998776643211 1
Q ss_pred cee-----ehhhhhhhHhhhccceeeEeCCCCCh----------------hhhhhhHHHHHhhhh--cCccccccccccC
Q 016817 141 TIT-----MYMEEHNVMRSLQSGFCVYDSRGFNY----------------NRVHEGLEELSSWMS--EGVHHNQRCLRSD 197 (382)
Q Consensus 141 ~~~-----~~~~~~~~~r~~~ig~v~Q~~~l~~~----------------~tv~eni~~~~~~~~--~~~~~~~~~~~~l 197 (382)
... ........++...+++++|++.+... ..+.+-+......+. .....++++.+++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 110 00111112222367888886533211 011111111111111 1112335667788
Q ss_pred ccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 198 DCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 198 ~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
+.+|+.+...++++.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ +.|||+||||.+
T Consensus 329 ~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------~~tviivsHd~~ 402 (718)
T PLN03073 329 AGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------PKTFIVVSHARE 402 (718)
T ss_pred HHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------CCEEEEEECCHH
Confidence 889986444458899999999999999999999999999999 99999999999999885 579999999766
Q ss_pred CChhhhhhhhhhhhhh
Q 016817 275 LSTEERLDARLKICEY 290 (382)
Q Consensus 275 l~~~~~~~d~v~ll~~ 290 (382)
. +..+|++++++++
T Consensus 403 ~--l~~~~d~i~~l~~ 416 (718)
T PLN03073 403 F--LNTVVTDILHLHG 416 (718)
T ss_pred H--HHHhCCEEEEEEC
Confidence 6 8889999999986
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.4e-31 Score=236.39 Aligned_cols=187 Identities=13% Similarity=0.056 Sum_probs=153.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++.+|++..-+.. . ++.++||++.+||++-|.||||||||||+|+|+|+.+ ++|+|+++|..+.....
T Consensus 2 ~L~a~~L~~~R~e~--~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~---- 71 (209)
T COG4133 2 MLEAENLSCERGER--T----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE---- 71 (209)
T ss_pred cchhhhhhhccCcc--e----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh----
Confidence 56778887776433 3 5999999999999999999999999999999999999 89999999986643221
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.++. ..-|+--.+.+=+.+|++||+.+..... +......+.++++.+||.... |.+..+||-|||+||||
T Consensus 72 ------~~~~-~l~yLGH~~giK~eLTa~ENL~F~~~~~--~~~~~~~i~~Al~~vgL~g~~-dlp~~~LSAGQqRRvAl 141 (209)
T COG4133 72 ------SYHQ-ALLYLGHQPGIKTELTALENLHFWQRFH--GSGNAATIWEALAQVGLAGLE-DLPVGQLSAGQQRRVAL 141 (209)
T ss_pred ------hHHH-HHHHhhccccccchhhHHHHHHHHHHHh--CCCchhhHHHHHHHcCccccc-ccchhhcchhHHHHHHH
Confidence 1222 5566666677778899999998765333 223456788899999999765 49999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
||-++..+++.|||| +||......+-.++..- ..+|--||.+||.+.-
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H---~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH---AAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHH---hcCCCEEEEecCCccC
Confidence 999999999999999 99999999999999875 4578889999996544
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=4e-32 Score=311.32 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=132.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.+. +.+||++|++.
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-----------------------~~i~yv~Q~~~ 731 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-----------------------RSIAYVPQQAW 731 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----------------------CeEEEEeCCCc
Confidence 6999999999999999999999999999999999999 89999752 27999999999
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccc---------cCccc--cccccccccccCCCccceeeecceeeeehhHHHH
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLR---------SDDCA--LMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEI 234 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~---------~l~~~--~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~i 234 (382)
+|+ .|++||+.+... .+.++..+ .++.+ |+...+. +++.+|||||||||+|||||+.+|++
T Consensus 732 l~~-~Tv~enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~i 803 (1560)
T PTZ00243 732 IMN-ATVRGNILFFDE------EDAARLADAVRVSQLEADLAQLGGGLETEIG-EKGVNLSGGQKARVSLARAVYANRDV 803 (1560)
T ss_pred cCC-CcHHHHHHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccchHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 886 799999975321 01111122 22333 4444444 67889999999999999999999999
Q ss_pred HHHHh---cCCCCcchhhhhhc-cCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 235 YKALK---AGDSKPLDATKRLF-SAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 235 LLLDE---~LD~~~~~~i~~~l-~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||| +||+.+...+++.+ ... . .|+|+|+||||++. +. .+|+|++|++
T Consensus 804 llLDEP~saLD~~~~~~i~~~~~~~~---~-~~~TvIlvTH~~~~--~~-~ad~ii~l~~ 856 (1560)
T PTZ00243 804 YLLDDPLSALDAHVGERVVEECFLGA---L-AGKTRVLATHQVHV--VP-RADYVVALGD 856 (1560)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHh---h-CCCEEEEEeCCHHH--HH-hCCEEEEEEC
Confidence 99999 99999988887643 332 1 58999999997665 64 6889988876
No 363
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=2e-31 Score=294.94 Aligned_cols=226 Identities=17% Similarity=0.081 Sum_probs=182.0
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhhh---h-----cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA---L-----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
+..|+..+.++++.+-++.++.+|+.+.+..++.. . .+.+..++++|.+++....... +.|+||||+|+
T Consensus 469 Lr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~---~tL~dIn~~i~ 545 (1381)
T KOG0054|consen 469 LRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPE---PTLKDINFEIK 545 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCc---ccccceeEEec
Confidence 34688888888888889999999999999988751 1 1334579999999998763221 25999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+|+.+||+||-||||||||.+|.|..+ .+|+|.++| .++||+|.|.+++ .||+||
T Consensus 546 ~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-----------------------siaYv~Q~pWI~n-gTvreN 601 (1381)
T KOG0054|consen 546 KGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-----------------------SVAYVPQQPWIQN-GTVREN 601 (1381)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-----------------------eEEEeccccHhhC-CcHHHh
Confidence 999999999999999999999999999 899999987 4899999999998 899999
Q ss_pred HHHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|.++. .-++++.+++++...|.+++. ..|. +|||||||||+||||+.++++|+|||+ ++
T Consensus 602 ILFG~------~~d~~rY~~Vi~aC~L~~Dle-~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 602 ILFGS------PYDEERYDKVIKACALKKDLE-ILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred hhcCc------cccHHHHHHHHHHccCHhHHh-hcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 96532 224456666777777765544 4443 499999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|.+.-+.+++..-.- .-+++|+|+|||.+.. . ..+|.|++|++
T Consensus 675 Dahvg~~if~~ci~~---~L~~KT~ILVTHql~~--L-~~ad~Iivl~~ 717 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRG---LLRGKTVILVTHQLQF--L-PHADQIIVLKD 717 (1381)
T ss_pred hHhhhHHHHHHHHHh---hhcCCEEEEEeCchhh--h-hhCCEEEEecC
Confidence 999888877554432 2268999999994443 4 46777888877
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=5.8e-31 Score=246.05 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=125.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHH-HHHHHhhcccceeeeEe-ecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLV-NLMYSVLSRSGLVLFAQ-TSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl-~~i~Gl~~~~G~I~i~G-~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+|+++||+|++||++||+||||||||||+ ..|. .+|++.+.. .+............++....+....++.+|++
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCC
Confidence 79999999999999999999999999996 3332 245554321 10000000000111111112222345556654
Q ss_pred C--CCChhhhhh---hHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHH--HHHHH
Q 016817 165 R--GFNYNRVHE---GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKA 237 (382)
Q Consensus 165 ~--l~~~~tv~e---ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLL 237 (382)
. +.+..++.. ........+ ..... ....++++.+++.+...++++.+|||||||||+|||||+.+| ++|||
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll 163 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-ARVGI-RERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 2 233334332 222111111 11111 122457888999753334899999999999999999999998 59999
Q ss_pred Hh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 238 LK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 238 DE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|| +||+.++..+.+.|+++ ++.|.|+|+||||++. + .+||++++|+
T Consensus 164 DEPt~gLD~~~~~~l~~~l~~~---~~~g~tii~itH~~~~--~-~~~d~i~~l~ 212 (226)
T cd03270 164 DEPSIGLHPRDNDRLIETLKRL---RDLGNTVLVVEHDEDT--I-RAADHVIDIG 212 (226)
T ss_pred eCCccCCCHHHHHHHHHHHHHH---HhCCCEEEEEEeCHHH--H-HhCCEEEEeC
Confidence 99 99999999999999998 3468999999997654 6 4899999984
No 365
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=1.3e-30 Score=285.45 Aligned_cols=206 Identities=17% Similarity=0.150 Sum_probs=176.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..+.++|+++.|+.... |++++||.|++||+.|++|||||||||++|+|.|..+ ++|+++++|.++.....
T Consensus 563 ~~~~~~~L~k~y~~~~~-----Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~--- 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-----AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD--- 634 (885)
T ss_pred ceEEEcceeeeecchhh-----hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc---
Confidence 56788999999976542 5999999999999999999999999999999999999 89999999997753221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
....+ +.+||+||...+++.+|.+|.+...+...+ ....-++.+++.++.++|.++.. ++...+|||+|+|+
T Consensus 635 -----~~~~~-~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-~~~~~ySgG~kRkL 707 (885)
T KOG0059|consen 635 -----FQQVR-KQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-KQVRTYSGGNKRRL 707 (885)
T ss_pred -----hhhhh-hhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-cchhhCCCcchhhH
Confidence 11133 389999999999999999999998875544 22233455788999999998876 88999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++|.||+.+|++++||| |+||..++.+++++.++ ++.|+.||++|| .+++++..|+|+.+|-+
T Consensus 708 s~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~---~k~g~aiiLTSH--sMeE~EaLCtR~aImv~ 773 (885)
T KOG0059|consen 708 SFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARL---RKNGKAIILTSH--SMEEAEALCTRTAIMVI 773 (885)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEcC--CHHHHHHHhhhhheeec
Confidence 99999999999999999 99999999999999998 456679999999 55569999999998876
No 366
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=2.4e-30 Score=273.07 Aligned_cols=206 Identities=17% Similarity=0.076 Sum_probs=164.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc----ccceeeeEeecCCCcccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~----~~G~I~i~G~~i~~~~~~ 141 (382)
.+.++|++.....+.. ..+.+|+|||.++++||++||+||||||||||+++|+|... .+|+|++||+...
T Consensus 25 ~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~----- 98 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD----- 98 (613)
T ss_pred eeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc-----
Confidence 3556666666544320 01126999999999999999999999999999999999986 3899999996321
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC----ccccccccccCccccccccccccccC-----
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCALMKNDAEIDDLK----- 212 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~~L~~~~~~~~~~----- 212 (382)
...++. ..|||.||..+++.+||+|.+.+.+...... ...+++++++++.+||.+ ..|..++
T Consensus 99 -------~~~~~~-~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~~~t~ig~~~~r 169 (613)
T KOG0061|consen 99 -------SRSFRK-ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-CADTLIGNPGIR 169 (613)
T ss_pred -------hhhhhh-eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-hccceecCCCCC
Confidence 112443 8999999999999999999998876432221 233467888999999984 4457665
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
++|||||+||+||.-|+++|.||+||| +||..+..++.+.|++++ + .|+|||++-|.+.- ++.+.-|++++|.
T Consensus 170 giSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA--~-~grtVi~tIHQPss-~lf~lFD~l~lLs 245 (613)
T KOG0061|consen 170 GLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLA--R-SGRTVICTIHQPSS-ELFELFDKLLLLS 245 (613)
T ss_pred ccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHH--h-CCCEEEEEEeCCcH-HHHHHHhHhhhhc
Confidence 599999999999999999999999999 999999999999999995 4 49999999998765 3666777777776
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 246 ~ 246 (613)
T KOG0061|consen 246 E 246 (613)
T ss_pred C
Confidence 5
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=4.8e-30 Score=265.09 Aligned_cols=188 Identities=18% Similarity=0.137 Sum_probs=158.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
...++++|+++.|+++ +. +++++||.|.+|+.+||+||||+|||||||+|+|... .+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~~~-~~----l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--------- 384 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RL----LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--------- 384 (530)
T ss_pred CeeEEEeccccccCCC-ce----eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc---------
Confidence 4578999999999765 22 5999999999999999999999999999999999988 8999987533
Q ss_pred eehhhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
-++||..|+. .+++..|+.+++.... +......++..|..+++......+++..||||||-|
T Consensus 385 ------------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~R 447 (530)
T COG0488 385 ------------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKAR 447 (530)
T ss_pred ------------eEEEEEEehhhhcCccCcHHHHHHhhC-----ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHH
Confidence 2799999986 4456667777774321 111256678889999997544458999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.+|+.++.+|.+||||| .||..+...+.+.|.+. .-|||+||||-.+ +.+.|++++.+.+
T Consensus 448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f------~Gtvl~VSHDr~F--l~~va~~i~~~~~ 511 (530)
T COG0488 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF------EGTVLLVSHDRYF--LDRVATRIWLVED 511 (530)
T ss_pred HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC------CCeEEEEeCCHHH--HHhhcceEEEEcC
Confidence 999999999999999999 99999999999999997 4599999998888 8899999888874
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.94 E-value=7.7e-31 Score=225.06 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=105.7
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++... .....+ ..++|++|++.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~---------~~~~~~-~~i~~~~~~~~~ 70 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI---------DIEELR-RRIGYVPQDPQL 70 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS---------HHHHHH-HTEEEEESSHCH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc---------cccccc-cccccccccccc
Confidence 689999999999999999999999999999999999 899999999977541 112234 489999999999
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc---ccccCCCccceeeecceeeeehhHHHHHHHHh
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE---IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK 239 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~---~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE 239 (382)
++..|+.+|.. .+++.++++.+++.+... ++.+.+|||||||||+|||||+.+|++|||||
T Consensus 71 ~~~~tv~~~~~------------~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDE 134 (137)
T PF00005_consen 71 FPGLTVRENES------------DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDE 134 (137)
T ss_dssp HTTSBHHHHHH------------HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEES
T ss_pred ccccccccccc------------cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99888988821 123445556666554322 24449999999999999999999999999999
No 369
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=2.6e-29 Score=221.14 Aligned_cols=205 Identities=18% Similarity=0.106 Sum_probs=163.1
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~ 167 (382)
|-.+|.++..||++-+|||||||||||+-.++|+.+-+|+|.++|.++.... ..+++ + +-+|..|+..-.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~------~~eLA---r-hRAYLsQqq~p~ 84 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWS------ATELA---R-HRAYLSQQQTPP 84 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHh------HhHHH---H-HHHHHhhccCCc
Confidence 6778999999999999999999999999999999999999999999764322 22222 2 557888875444
Q ss_pred ChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehh-------HHHHHHHHh-
Q 016817 168 NYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN-------IAEIYKALK- 239 (382)
Q Consensus 168 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~-------~P~iLLLDE- 239 (382)
..+.|+..+.... ........+..+..++++.+.+. |..++|||||-|||-+|-..++ ..++||+||
T Consensus 85 f~mpV~~YL~L~q----P~~~~a~~i~~i~~~L~l~DKL~-Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 85 FAMPVWHYLTLHQ----PDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred chhhhhhhhhhcC----chHHHHHHHHHHHhhhcccchhh-hhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 4577777664211 11112234566778899998887 9999999999999999988765 246899999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceeeEEEecc-ccCCC
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYDIVCLTE-YGFPA 312 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~~~~l~~-~~~~~ 312 (382)
+||...+..+..+|.+++ ..|.+|||++||++. ..+-+|++++++. +..|+.++|++.+.+.+ |+...
T Consensus 160 ~~~LDvAQ~~aLdrll~~~c---~~G~~vims~HDLNh--TLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~fg~~f 233 (248)
T COG4138 160 MNSLDVAQQSALDRLLSALC---QQGLAIVMSSHDLNH--TLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNF 233 (248)
T ss_pred CcchhHHHHHHHHHHHHHHH---hCCcEEEEeccchhh--HHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHhccce
Confidence 999999999999999984 479999999998887 7888999999986 77888899998877766 76644
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=2.1e-29 Score=230.91 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=122.2
Q ss_pred c-ccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---------cceeeeEeecCCCcccceeehhhhhhhHhhhc
Q 016817 88 I-QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---------SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156 (382)
Q Consensus 88 L-~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---------~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ 156 (382)
+ ++++|++++| +++|+||||||||||+++|+|+.+ . .|++.+.|++.... . .+ ..
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~-~~ 77 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---------A---NF-AE 77 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---------C---ce-EE
Confidence 5 6789999999 999999999999999999999985 3 23566666543210 0 12 38
Q ss_pred cceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh----hHH
Q 016817 157 SGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS----NIA 232 (382)
Q Consensus 157 ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~----~~P 232 (382)
++|+||++..+. .. ...+++.++++. .+. .++.+.+||||||||++|||+|+ .+|
T Consensus 78 v~~vfq~~~~~~--~~---------------~~~~~~~~~l~~---~~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~ 136 (197)
T cd03278 78 VTLTFDNSDGRY--SI---------------ISQGDVSEIIEA---PGK-KVQRLSLLSGGEKALTALALLFAIFRVRPS 136 (197)
T ss_pred EEEEEEcCCCce--eE---------------EehhhHHHHHhC---CCc-cccchhhcCHHHHHHHHHHHHHHHhccCCC
Confidence 999999987651 00 012234445555 323 34889999999999999999997 456
Q ss_pred HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 233 EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 233 ~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++++||| +||+..+..+.+.|+++. ++.|||+||||++. + .+||+++.+..
T Consensus 137 ~illlDEP~~~LD~~~~~~l~~~l~~~~----~~~tiIiitH~~~~--~-~~~d~v~~~~~ 190 (197)
T cd03278 137 PFCVLDEVDAALDDANVERFARLLKEFS----KETQFIVITHRKGT--M-EAADRLYGVTM 190 (197)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc----cCCEEEEEECCHHH--H-hhcceEEEEEe
Confidence 9999999 999999999999999983 36899999997654 5 47888877654
No 371
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.8e-29 Score=245.29 Aligned_cols=235 Identities=15% Similarity=0.071 Sum_probs=179.3
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhh---h--h-cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCce
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL---A--L-IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G 98 (382)
+..|+.+++-....+-.+.++..++.++..-++. + . .+.-..|+++||.|.|.... . -+..||++|++|
T Consensus 275 lr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~~lelrnvrfay~~~~--F---hvgPiNl~ikrG 349 (546)
T COG4615 275 LRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNA--F---HVGPINLTIKRG 349 (546)
T ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCcccceeeeeeeeccCccc--c---eecceeeEEecC
Confidence 4567777776666677778888888776553321 0 0 01134799999999997664 2 288999999999
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
|++-|+|.||||||||++++.|+++ ++|+|++||+++.. .++.++|. -++-||-|+.||+.+--.|
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~---------e~ledYR~-LfSavFsDyhLF~~ll~~e--- 416 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA---------EQLEDYRK-LFSAVFSDYHLFDQLLGPE--- 416 (546)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC---------CCHHHHHH-HHHHHhhhHhhhHhhhCCc---
Confidence 9999999999999999999999999 89999999997753 33445776 8999999999998532222
Q ss_pred HHHhhhhcCccccccccccCcccccccc--cccc--ccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhh
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKND--AEID--DLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATK 250 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~--~~~~--~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~ 250 (382)
+.+..+.+..+++++.+.+. ++|. .+-.||-|||+|+|+--||+-+-+|+++|| .-||.-++.+.
T Consensus 417 --------~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY 488 (546)
T COG4615 417 --------GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFY 488 (546)
T ss_pred --------cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHH
Confidence 22333455566666655432 1222 244699999999999999999999999999 79999999998
Q ss_pred hhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 251 RLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 251 ~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.+.-+. +++|+||+.||||... ..++||++.+++
T Consensus 489 ~~lLp~L--K~qGKTI~aIsHDd~Y---F~~ADrll~~~~ 523 (546)
T COG4615 489 QVLLPLL--KEQGKTIFAISHDDHY---FIHADRLLEMRN 523 (546)
T ss_pred HHHhHHH--HHhCCeEEEEecCchh---hhhHHHHHHHhc
Confidence 8776664 7789999999997544 457899998887
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=4.7e-28 Score=230.66 Aligned_cols=192 Identities=16% Similarity=0.114 Sum_probs=138.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHH-----Hhhc-----------------ccceeeeEeecCCCcccceee
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-----SVLS-----------------RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~-----Gl~~-----------------~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.|+|+|++|+.|.+++|.|+||||||||++.+. .... ..--|.+|+.++...+.....
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 499999999999999999999999999999662 1110 011356677666433221110
Q ss_pred -hhhhhhhHhh---------------hccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccc
Q 016817 145 -YMEEHNVMRS---------------LQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEI 208 (382)
Q Consensus 145 -~~~~~~~~r~---------------~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~ 208 (382)
+..-...+|. ..+.|..++...+..+|+.|++.++.... ..+++.++++.+||.....+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-----~~~~~~~~L~~vgL~~l~l~ 164 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-----KIARKLQTLCDVGLGYIKLG 164 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-----hHHHHHHHHHHcCCchhhhc
Confidence 1111111111 13556556555556789999987654221 12345678889999863234
Q ss_pred cccCCCccceeeecceeeeehhH---HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNI---AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLD 282 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~---P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~ 282 (382)
+++.+|||||+||++|||+|+.+ |+++|||| +||+..+..+.+.|+++ .+.|.|||+||||++. +. .+
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l---~~~g~tvIiitH~~~~--i~-~a 238 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL---VDKGNTVVVIEHNLDV--IK-CA 238 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HH-hC
Confidence 89999999999999999999996 79999999 99999999999999998 4468999999997765 65 68
Q ss_pred hhhhhhh
Q 016817 283 ARLKICE 289 (382)
Q Consensus 283 d~v~ll~ 289 (382)
|+++.+.
T Consensus 239 D~ii~Lg 245 (261)
T cd03271 239 DWIIDLG 245 (261)
T ss_pred CEEEEec
Confidence 8888883
No 373
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=1.2e-26 Score=209.74 Aligned_cols=225 Identities=14% Similarity=0.173 Sum_probs=170.1
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcc-----cceeeeEeecCCCcc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSR-----SGLVLFAQTSSGNSS 139 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~-----~G~I~i~G~~i~~~~ 139 (382)
+.+.++|++..+......++ +++++|+++++||+-|+||.||||||-..|.|+|..++ .-+..|++.++-.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK--~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~-- 77 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVK--AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLR-- 77 (330)
T ss_pred CcccccceEEEEecCCCceE--eeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhc--
Confidence 35778899988865554453 79999999999999999999999999999999999774 3455566655432
Q ss_pred cceeehhhhhhhHhhhccceeeEeCC--CCChhhhhh-hHHHHHhhhhcC------ccccccccccCcccccccc--ccc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHE-GLEELSSWMSEG------VHHNQRCLRSDDCALMKND--AEI 208 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~e-ni~~~~~~~~~~------~~~~~~~~~~l~~~~L~~~--~~~ 208 (382)
+.+.+++.+-.+.|+|+||+|. |-|..+|.. .|..+..+...+ .=.+.++.+++.++|+.++ +..
T Consensus 78 ----L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~ 153 (330)
T COG4170 78 ----LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR 153 (330)
T ss_pred ----CChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence 3344444444457999999974 556666543 333332221111 0123456677889999753 334
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
.||.+|.-||-|+|.||.|++.+|++||.|| ++|+.++.+++.+|.++. +.+|.||++++||+.. +...||++
T Consensus 154 SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mN--Qn~~TtILL~s~Dl~~--is~W~d~i 229 (330)
T COG4170 154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLN--QNSNTTILLISHDLQM--ISQWADKI 229 (330)
T ss_pred hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhh--ccCCceEEEEcccHHH--HHHHhhhe
Confidence 8999999999999999999999999999999 999999999999999984 6689999999997666 99999998
Q ss_pred hhhhh---cccccccceee
Q 016817 286 KICEY---LGVSEISGVYD 301 (382)
Q Consensus 286 ~ll~~---~~~~~~~~v~~ 301 (382)
-++-- +.+++.+++..
T Consensus 230 ~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 230 NVLYCGQTVESAPSEELVT 248 (330)
T ss_pred EEEEecccccccchhHHhc
Confidence 87753 66666555553
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=5.1e-27 Score=220.84 Aligned_cols=182 Identities=15% Similarity=0.087 Sum_probs=119.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-----------------ccc--------eeeeEeecCCCcccc
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----------------RSG--------LVLFAQTSSGNSSHT 141 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-----------------~~G--------~I~i~G~~i~~~~~~ 141 (382)
++++++ |++++|+||||||||||+++|++++. .+| +|.+++.+-...
T Consensus 17 ~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~--- 88 (243)
T cd03272 17 VIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP--- 88 (243)
T ss_pred ccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC---
Confidence 477766 78999999999999999999996542 233 334433211000
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCCh-hhhhhhHHHHHhhhhcCcccc---ccccccCccccccccccccccCCCccc
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNY-NRVHEGLEELSSWMSEGVHHN---QRCLRSDDCALMKNDAEIDDLKSSPKY 217 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~-~tv~eni~~~~~~~~~~~~~~---~~~~~~l~~~~L~~~~~~~~~~~LSGG 217 (382)
. ......+++ .+|+++|++.+++. .+..+...... ..+...... ....+..+.+++.+.. ++++.+||||
T Consensus 89 --~-~~~~~~i~r-~ig~~~~~~~l~~~~~t~~ei~~~l~-~~gl~~~~~~~~~~qg~i~~l~~l~~~~-~~~~~~lS~G 162 (243)
T cd03272 89 --I-DKEEVRLRR-TIGLKKDEYFLDKKNVTKNDVMNLLE-SAGFSRSNPYYIVPQGKINSLTNMKQDE-QQEMQQLSGG 162 (243)
T ss_pred --C-CCCEEEEEE-EEECCCCEEEECCeEcCHHHHHHHHH-HcCCCCCCCcEEEEcCchHHhhhccccc-cccccccCHH
Confidence 0 000111333 68999998877763 45444433322 221111000 0112334445555443 3889999999
Q ss_pred eeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 218 qkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||||++|||||+. +|++||+|| +||+.++..+++.|+++ . .+.|+|++||+. ++.++||+++++.
T Consensus 163 ~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~---~-~~~~ii~~~h~~---~~~~~~d~i~~l~ 234 (243)
T cd03272 163 QKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL---S-DGAQFITTTFRP---ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH---h-CCCEEEEEecCH---HHHhhCCEEEEEE
Confidence 9999999999974 589999999 99999999999999997 2 267888888843 3667899888774
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.91 E-value=9.6e-27 Score=215.54 Aligned_cols=185 Identities=15% Similarity=0.081 Sum_probs=125.7
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCC-ceeeeeeecccCCCchhHHHHHHHhh-c-ccceeeeEe-ecCCCcccc
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIP-PVITILLMGFSGSGKSSLVNLMYSVL-S-RSGLVLFAQ-TSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~-~Ge~~alvGpnGsGKSTLl~~i~Gl~-~-~~G~I~i~G-~~i~~~~~~ 141 (382)
.|+++|+. +|... ++++|+.. +|++++|+||||||||||+++|++.+ . ..+....+. .+...
T Consensus 5 ~i~l~nf~-~y~~~---------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~---- 70 (213)
T cd03279 5 KLELKNFG-PFREE---------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFA---- 70 (213)
T ss_pred EEEEECCc-CcCCc---------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhc----
Confidence 35667776 55332 34466654 58999999999999999999999644 3 334443321 00000
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccc--cCccccccccccccccCCCcccee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLR--SDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~--~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
. ...+ ..++++||+.... .++.... +... +...+ .++..++.+.+. +++.+|||||+
T Consensus 71 ----~---~~~~-~~v~~~f~~~~~~--~~~~r~~---------gl~~-~~~~~~~~l~~g~l~~~l~-~~~~~lS~G~~ 129 (213)
T cd03279 71 ----P---GEDT-AEVSFTFQLGGKK--YRVERSR---------GLDY-DQFTRIVLLPQGEFDRFLA-RPVSTLSGGET 129 (213)
T ss_pred ----C---CCcc-EEEEEEEEECCeE--EEEEEec---------CCCH-HHHHHhhhhhhcchHHHhc-CCccccCHHHH
Confidence 0 0012 3789999986321 1221111 1111 11111 234444555554 88999999999
Q ss_pred eecceeeeehhHH----------HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIA----------EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 220 QRvaIAraL~~~P----------~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
||++|||||+.+| ++||||| +||+.++..+.+.|+++ ++++.|+|+||||++. +..+|++++
T Consensus 130 ~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~---~~~~~tii~itH~~~~--~~~~~~~i~ 204 (213)
T cd03279 130 FLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI---RTENRMVGVISHVEEL--KERIPQRLE 204 (213)
T ss_pred HHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEECchHH--HHhhCcEEE
Confidence 9999999999755 6899999 99999999999999988 3458999999997766 888999999
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
++++
T Consensus 205 ~~~~ 208 (213)
T cd03279 205 VIKT 208 (213)
T ss_pred EEec
Confidence 9875
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=2.6e-27 Score=219.44 Aligned_cols=181 Identities=15% Similarity=0.094 Sum_probs=130.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
|+++|.. +|++.. +++++++ ++++|+||||||||||+++|... +|.++.
T Consensus 6 l~l~nfk-~~~~~~------~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~---------~G~~~~---------- 54 (212)
T cd03274 6 LVLENFK-SYAGEQ------VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV---------FGFRAS---------- 54 (212)
T ss_pred EEEECcc-cCCCCe------eeccCCC-----CeEEEECCCCCCHHHHHHHHHHH---------hccCHH----------
Confidence 3444543 665333 5888888 79999999999999999999732 343211
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-----h-cCcccc-cc----ccccCccccccccccccccCCCc
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-----S-EGVHHN-QR----CLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-----~-~~~~~~-~~----~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
..|.+++++++|+..+++.+++.++...+.... . .+.... .. ..++++.+++.+... +++..||
T Consensus 55 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~-~~~~~lS 129 (212)
T cd03274 55 ----KMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSW-KNISNLS 129 (212)
T ss_pred ----HhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccc-cchhhcC
Confidence 022236888888887777777777654332110 0 111111 11 256778888876654 8899999
Q ss_pred cceeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 216 GGqkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
+|||||++||||++. +|+++++|| +||+.++..+.+.|+++. ++.|+|++||+. ++.++||+++++
T Consensus 130 ~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~----~~~~~iivs~~~---~~~~~~d~v~~~ 202 (212)
T cd03274 130 GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT----KNAQFIVISLRN---NMFELADRLVGI 202 (212)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECcH---HHHHhCCEEEEE
Confidence 999999999999974 479999999 999999999999999972 467999999963 366789999887
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
..
T Consensus 203 ~~ 204 (212)
T cd03274 203 YK 204 (212)
T ss_pred Ee
Confidence 53
No 377
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.91 E-value=8.2e-27 Score=240.85 Aligned_cols=188 Identities=15% Similarity=0.057 Sum_probs=149.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+..|+++|++..-+++. . .|++.||+|++||.+-|.||||||||||+|+|+|++| -+|+|.+-..
T Consensus 390 ~~~i~~~nl~l~~p~~~-~----ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~--------- 455 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-T----LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD--------- 455 (604)
T ss_pred cceeEEeeeeEECCCCC-e----eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC---------
Confidence 47899999999988766 2 5999999999999999999999999999999999999 8999876421
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc-----ccccCCCccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE-----IDDLKSSPKY 217 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~~LSGG 217 (382)
..+-|+||.|++.. .|.+|.+.+.. ......++.+.++|.++||.+... ++--..||+|
T Consensus 456 ------------~~~lflpQ~PY~p~-GtLre~l~YP~---~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~G 519 (604)
T COG4178 456 ------------SALLFLPQRPYLPQ-GTLREALCYPN---AAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGG 519 (604)
T ss_pred ------------CceEEecCCCCCCC-ccHHHHHhCCC---CCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChh
Confidence 25779999987644 68888885431 111234567788899999986432 0222349999
Q ss_pred eeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 218 VLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 218 qkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
||||+++||.|+++|++++||| +||+.++..+++++++-+ .+.|||-|.|... ...+.++.+-+
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l----p~~tvISV~Hr~t---l~~~h~~~l~l 586 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL----PDATVISVGHRPT---LWNFHSRQLEL 586 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC----CCCEEEEeccchh---hHHHHhhheee
Confidence 9999999999999999999999 999999999999999843 6899999999433 34444444333
No 378
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=4.6e-26 Score=228.98 Aligned_cols=190 Identities=16% Similarity=0.107 Sum_probs=153.8
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+.+.+.+.|++|.|.++. . ++++++|-|..++.+++|||||||||||||++.|.+. ..|.|.-.-..
T Consensus 386 p~pvi~~~nv~F~y~~~~-~----iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~------- 453 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP-M----IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN------- 453 (614)
T ss_pred CCCeEEEeccccCCCCcc-h----hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-------
Confidence 467899999999998664 2 5999999999999999999999999999999999998 79998754431
Q ss_pred eeehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcccee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.+++.-|+. .+.-..+..+++.. .+ ......+.++.++.++||.....+.+..+||+|||
T Consensus 454 --------------~~~~y~Qh~~e~ldl~~s~le~~~~---~~-~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr 515 (614)
T KOG0927|consen 454 --------------KLPRYNQHLAEQLDLDKSSLEFMMP---KF-PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQR 515 (614)
T ss_pred --------------cchhhhhhhHhhcCcchhHHHHHHH---hc-cccchHHHHHHHHHHhCCCccccccchhhcccccc
Confidence 233333321 12223455555532 11 11234466778899999997667789999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.||.+|+.++..|.+||||| +||..+...+.+.|.+. .-+||+||||..+ +..+++++++..+
T Consensus 516 ~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~------~Ggvv~vSHDfrl--I~qVaeEi~~c~~ 581 (614)
T KOG0927|consen 516 RRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF------PGGVVLVSHDFRL--ISQVAEEIWVCEN 581 (614)
T ss_pred hhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc------CCceeeeechhhH--HHHHHHHhHhhcc
Confidence 99999999999999999999 99999999999999986 3589999999988 9999999999887
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=1.1e-26 Score=220.24 Aligned_cols=176 Identities=13% Similarity=0.050 Sum_probs=127.7
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEee-cCCCcccceeehhhhhhhHhhhccceeeEeC---------C
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQT-SSGNSSHTITMYMEEHNVMRSLQSGFCVYDS---------R 165 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~-~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~---------~ 165 (382)
..+++||||||||||||+++|++++. . .|++.+.|. ++.... .....+...++++||++ .
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~--------~~~~~~~~~v~~~fq~~~~~~~~~~~~ 96 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKR--------GQAGITKASVTIVFDNSDKSQSPIGFE 96 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcC--------CCCCCcEEEEEEEEEcCCcccCccccc
Confidence 44899999999999999999999997 4 568887765 321100 00012223799999985 3
Q ss_pred CCChhhhhhhHHHHHhh-hh-cC-ccccccccccCcccccc--------------------ccccccccCCCccceeeec
Q 016817 166 GFNYNRVHEGLEELSSW-MS-EG-VHHNQRCLRSDDCALMK--------------------NDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~-~~-~~-~~~~~~~~~~l~~~~L~--------------------~~~~~~~~~~LSGGqkQRv 222 (382)
+.+.++|.+++...... +. .+ ....+++.++++.+++. +. .++++.+||||||||+
T Consensus 97 ~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~-~~~~~~~lS~G~~qr~ 175 (251)
T cd03273 97 NYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGV-WKESLTELSGGQRSLV 175 (251)
T ss_pred CCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHh-hcccccccCHHHHHHH
Confidence 45678888887543211 10 11 11224566778888885 22 2378999999999999
Q ss_pred ceeeeeh----hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 223 DFAMVVS----NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 223 aIAraL~----~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||+ .+|+++|+|| +||+..+..+.+.|+++. .|.|+|+|||+. ++...||+++-+.
T Consensus 176 ~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~----~g~~ii~iSH~~---~~~~~~d~v~~~~ 242 (251)
T cd03273 176 ALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF----KGSQFIVVSLKE---GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECCH---HHHHhCCEEEEEE
Confidence 9999998 4789999999 999999999999999972 478999999963 3555688876553
No 380
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=3.5e-25 Score=224.82 Aligned_cols=189 Identities=13% Similarity=0.114 Sum_probs=154.5
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEe---
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD--- 163 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~--- 163 (382)
++|+||++.+||++||.|-=|||+|-|+++|.|..+ .+|+|.++|+++.-.+ +. ...+. .|+||+.|
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s------p~--~Ai~~-Gi~~v~EDRk~ 345 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS------PR--DAIKA-GIAYVPEDRKS 345 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC------HH--HHHHc-CCEeCCccccc
Confidence 889999999999999999999999999999999887 8999999999764222 11 11333 89999987
Q ss_pred CCCCChhhhhhhHHHHHh-hhhcC-c----cccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHH
Q 016817 164 SRGFNYNRVHEGLEELSS-WMSEG-V----HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKA 237 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~-~~~~~-~----~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLL 237 (382)
.-++..+++.+|+..... .+... . ...+.+.++.+.+++...-.+..+.+||||-||+|.|||.|+.+|++|||
T Consensus 346 ~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLil 425 (500)
T COG1129 346 EGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLIL 425 (500)
T ss_pred CcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEE
Confidence 457888999999976521 11111 1 11234556677777764333478899999999999999999999999999
Q ss_pred Hh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 238 LK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 238 DE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|| |+|...+.+|.++|+++ .++|++|||||- ++.|+..+||||++|++
T Consensus 426 DEPTRGIDVGAK~eIy~li~~l---A~~G~ail~iSS--ElpEll~~~DRIlVm~~ 476 (500)
T COG1129 426 DEPTRGIDVGAKAEIYRLIREL---AAEGKAILMISS--ELPELLGLSDRILVMRE 476 (500)
T ss_pred CCCCcCcccchHHHHHHHHHHH---HHCCCEEEEEeC--ChHHHHhhCCEEEEEEC
Confidence 99 99999999999999999 457999999999 66679999999999987
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.88 E-value=3.3e-25 Score=204.18 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=112.6
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHH----Hhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC-
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMY----SVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR- 165 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~----Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~- 165 (382)
++++.+| +++|+||||||||||+++|. |... .+|.+..+...+... ..+ ..++++||++.
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~------------~~~-~~v~~~f~~~~~ 82 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG------------EVR-AQVKLAFENANG 82 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCC------------CCc-EEEEEEEEeCCC
Confidence 3455567 99999999999999999996 5555 456554111111100 011 37899999872
Q ss_pred ----CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee------cceeeeehhHHHHH
Q 016817 166 ----GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR------VDFAMVVSNIAEIY 235 (382)
Q Consensus 166 ----l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR------vaIAraL~~~P~iL 235 (382)
....+++.+|+.+. ..+.+ ...+ ++.+.+||+||+|| ++||||++.+|+++
T Consensus 83 ~~~~v~r~~~~~~~~~~~---------~~~~~---------~~~~-~~~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 83 KKYTITRSLAILENVIFC---------HQGES---------NWPL-LDMRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred CEEEEEEEhhHhhceeee---------chHHH---------HHHH-hcCccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 23334555555221 01111 1122 47899999999996 78999999999999
Q ss_pred HHHh---cCCCCcch-hhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 236 KALK---AGDSKPLD-ATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 236 LLDE---~LD~~~~~-~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|| +||+..+. .+.+.|+++. ++.|.|||+|||++++ +. .+|+++.++.
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~--~~~~~~iiiitH~~~~--~~-~~d~i~~l~~ 197 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERK--SQKNFQLIVITHDEEL--VD-AADHIYRVEK 197 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHH--hccCCEEEEEEecHHH--Hh-hCCEEEEEee
Confidence 9999 99999999 9999999882 3337899999997665 54 5777777754
No 382
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=1e-23 Score=229.81 Aligned_cols=186 Identities=15% Similarity=0.079 Sum_probs=153.3
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
+|+||+=-++||..+||+|+|||||||||++|+|-.. .+|+|.++|.+..+ ..+++ .+|||-|+
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q------------~tF~R-~~GYvqQ~ 872 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ------------ETFAR-VSGYVEQQ 872 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch------------hhhcc-ccceeecc
Confidence 6999999999999999999999999999999999865 39999999985431 11443 89999998
Q ss_pred CCCCChhhhhhhHHHHHhhhh-cCcc---ccccccccCccccccccccccccCC----CccceeeecceeeeehhHH-HH
Q 016817 164 SRGFNYNRVHEGLEELSSWMS-EGVH---HNQRCLRSDDCALMKNDAEIDDLKS----SPKYVLRRVDFAMVVSNIA-EI 234 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~-~~~~---~~~~~~~~l~~~~L~~~~~~~~~~~----LSGGqkQRvaIAraL~~~P-~i 234 (382)
..=.+..||+|-+.+.+.... .... ..+.++++++.++|++.. |..++. ||.+||+|+.||--|+.+| .|
T Consensus 873 DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 873 DIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 665688999999988764321 1112 225578889999998543 355544 9999999999999999999 89
Q ss_pred HHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 235 YKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 235 LLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+||| |||..+...|++.++++ .+.|.||+.+-|.+..+ +.+.-|++++|+.
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkl---a~tGqtIlCTIHQPS~~-ife~FD~LLLLkr 1006 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKL---ADTGQTILCTIHQPSID-IFEAFDELLLLKR 1006 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHH---HhcCCeEEEEecCCcHH-HHHHHhHHHHHhc
Confidence 99999 99999999999999999 45899999999988774 5667788888875
No 383
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=3.6e-24 Score=211.65 Aligned_cols=166 Identities=17% Similarity=0.111 Sum_probs=132.9
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
=+|..||+++++||||-||||++++|+|.++ ++|. ..+ -+++|=||--.--...|
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~--------------------~~vSyKPQyI~~~~~gt 417 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED--------------------LKVSYKPQYISPDYDGT 417 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc--------------------ceEeecceeecCCCCCc
Confidence 3456789999999999999999999999999 8888 221 26777777543334578
Q ss_pred hhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchh
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDA 248 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~ 248 (382)
|.+.+...... .........++++-++|++.++ ++..+|||||.||||||.||.++++++|||| .||.+.+..
T Consensus 418 V~~~l~~~~~~---~~~~s~~~~ei~~pl~l~~i~e-~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 418 VEDLLRSAIRS---AFGSSYFKTEIVKPLNLEDLLE-RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred HHHHHHHhhhh---hcccchhHHhhcCccchHHHHh-cccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence 88877433211 1112222345778888987665 9999999999999999999999999999999 899999999
Q ss_pred hhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 249 TKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 249 i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+-+.|+++. .+.++|.++|.||+-+ +..++|++++..+
T Consensus 494 vakvIRR~~--e~~~kta~vVdHDi~~--~dyvsDr~ivF~G 531 (591)
T COG1245 494 VAKVIRRFI--ENNEKTALVVDHDIYM--IDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHHHH--hhcCceEEEEecceeh--hhhhhceEEEEec
Confidence 999999985 5678999999998888 7788999999876
No 384
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=1e-23 Score=213.47 Aligned_cols=236 Identities=16% Similarity=0.075 Sum_probs=174.7
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhh-----------------------------hhcCcCchhHHHHHh
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL-----------------------------ALIAPDGLNELRHKF 73 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~i~i~nvs 73 (382)
..+..-|..++.+.-++...+.-+.|+.++.+.-.. +..+.+..|++++|+
T Consensus 361 i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~ 440 (659)
T KOG0060|consen 361 IYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVS 440 (659)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeee
Confidence 345566778888888888888888999887765321 111234589999999
Q ss_pred hhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhH
Q 016817 74 LSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVM 152 (382)
Q Consensus 74 ~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~ 152 (382)
..-+.++ ++ +++|+||+|+.|+.+.|.||||||||+|+|+++|+++ .+|++..-.+.-.
T Consensus 441 l~tPt~g-~~---lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---------------- 500 (659)
T KOG0060|consen 441 LSTPTNG-DL---LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---------------- 500 (659)
T ss_pred ecCCCCC-ce---eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----------------
Confidence 9988743 33 5889999999999999999999999999999999999 8999976443100
Q ss_pred hhhccceeeEeCCCCChhhhhhhHHHHHhhh--hcCccccccccccCcccccccccc----------ccccCCCccceee
Q 016817 153 RSLQSGFCVYDSRGFNYNRVHEGLEELSSWM--SEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLR 220 (382)
Q Consensus 153 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQ 220 (382)
+.+-|+||.|+. +..|.++.+-+..... ..+..+++.+.+.|+.++|.+.+. -.....||+||||
T Consensus 501 --~~lfflPQrPYm-t~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQ 577 (659)
T KOG0060|consen 501 --KDLFFLPQRPYM-TLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQ 577 (659)
T ss_pred --CceEEecCCCCc-cccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHH
Confidence 257799999864 3358888775542111 123344566777777777654221 0122359999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+++||-+.++|++-+||| |+|...+..+.+.+++. |+|.|-|+| +-+ ..++-+.+.-|++
T Consensus 578 RLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~------giT~iSVgH--RkS-L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 578 RLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM------GITFISVGH--RKS-LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc------CCeEEEecc--HHH-HHhhhhEEEEecC
Confidence 9999999999999999999 99999999999888874 899999999 553 3344555555544
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.85 E-value=1.7e-23 Score=228.45 Aligned_cols=90 Identities=9% Similarity=-0.058 Sum_probs=78.1
Q ss_pred ccccCccccccccccccccCCCccceeeecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCCCe
Q 016817 193 CLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPI 266 (382)
Q Consensus 193 ~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~ti 266 (382)
..+.++.+||.....++.+.+|||||+||++||++|+.+| +++|||| +||+..+..+++.|+++ .+.|.||
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l---~~~G~TV 886 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRL---VDKGNTV 886 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEE
Confidence 3457888899753334889999999999999999999999 9999999 99999999999999998 4468999
Q ss_pred EEEecCCCCChhhhhhhhhhhh
Q 016817 267 LILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 267 IiiTHd~~l~~~~~~~d~v~ll 288 (382)
|+||||++. +. .+|+++.|
T Consensus 887 IiitH~~~~--i~-~aD~ii~L 905 (943)
T PRK00349 887 VVIEHNLDV--IK-TADWIIDL 905 (943)
T ss_pred EEEecCHHH--HH-hCCEEEEe
Confidence 999997665 64 68888888
No 386
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.84 E-value=2e-23 Score=237.08 Aligned_cols=196 Identities=15% Similarity=0.149 Sum_probs=130.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHH---------HHHHhhcc----c-ce----eeeEeecCCCcccc-eeehhh
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVN---------LMYSVLSR----S-GL----VLFAQTSSGNSSHT-ITMYME 147 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~---------~i~Gl~~~----~-G~----I~i~G~~i~~~~~~-~~~~~~ 147 (382)
.|+++||+|++||+++|+|+||||||||++ .|.|.... + +. |.+|..++...+.. ...+..
T Consensus 610 ~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g 689 (1809)
T PRK00635 610 NLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIK 689 (1809)
T ss_pred CccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehh
Confidence 499999999999999999999999999999 33332211 1 11 34444444321110 011000
Q ss_pred hhhhHh----------h---hccceeeEe------------------C--------------------CCCChhhhhhhH
Q 016817 148 EHNVMR----------S---LQSGFCVYD------------------S--------------------RGFNYNRVHEGL 176 (382)
Q Consensus 148 ~~~~~r----------~---~~ig~v~Q~------------------~--------------------~l~~~~tv~eni 176 (382)
-...+| . ....|.|+. + ..+...||.|++
T Consensus 690 ~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL 769 (1809)
T PRK00635 690 AFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADIL 769 (1809)
T ss_pred hhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHH
Confidence 000111 0 011233442 0 134456777877
Q ss_pred HHHHhhhh-cC---ccccccccccCccccccccccccccCCCccceeeecceeeeeh---hHHHHHHHHh---cCCCCcc
Q 016817 177 EELSSWMS-EG---VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS---NIAEIYKALK---AGDSKPL 246 (382)
Q Consensus 177 ~~~~~~~~-~~---~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~---~~P~iLLLDE---~LD~~~~ 246 (382)
.+...... .. ....+++ ++++.+||.+...++.+.+|||||+|||+|||||+ .+|++||||| +||+..+
T Consensus 770 ~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~ 848 (1809)
T PRK00635 770 EMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDI 848 (1809)
T ss_pred HcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHH
Confidence 65432111 01 1112233 47788899754234899999999999999999997 6999999999 9999999
Q ss_pred hhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 247 DATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 247 ~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
..+++.|+++ .+.|.|||+||||++. + .++|++++|.
T Consensus 849 ~~Ll~lL~~L---~~~G~TVIiIsHdl~~--i-~~aDrVi~L~ 885 (1809)
T PRK00635 849 KALIYVLQSL---THQGHTVVIIEHNMHV--V-KVADYVLELG 885 (1809)
T ss_pred HHHHHHHHHH---HhcCCEEEEEeCCHHH--H-HhCCEEEEEc
Confidence 9999999998 4469999999997665 7 6899999994
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=6e-23 Score=188.34 Aligned_cols=168 Identities=13% Similarity=0.039 Sum_probs=114.4
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceee--eEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVL--FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~--i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
++++++++.+| +.+|+||||||||||+.+|..... |+.. ..|..+.+. . +. .... ..+.+.|++..
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~--~~~~~~~r~~~~~~~---i----~~-~~~~-~~i~~~~~~~~ 79 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG--GKASDTNRGSSLKDL---I----KD-GESS-AKITVTLKNQG 79 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc--CCcccccccccHHHH---h----hC-CCCe-EEEEEEEEcCC
Confidence 56677888887 789999999999999999975443 2221 112211000 0 00 0001 25788888766
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee----hhHHHHHHHHh--
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV----SNIAEIYKALK-- 239 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL----~~~P~iLLLDE-- 239 (382)
++++ . . .....+.+.++++. .+.. ++++.+||+|||||++||+|| +.+|+++||||
T Consensus 80 ~~~~-~----~---------~~~~~~~~~~~l~~---~~~~-~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 80 LDAN-P----L---------CVLSQDMARSFLTS---NKAA-VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred ccCC-c----C---------CHHHHHHHHHHhcc---cccc-CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 5541 0 0 00012334455555 3333 489999999999999999999 58999999999
Q ss_pred -cCCCCcchhhhhhccCcccccc--CCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKC--NENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~--~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||+.++..+.+.|.++. ++ .+.|||++||+++. +..+ |+|.++..
T Consensus 142 ~glD~~~~~~~~~~l~~~~--~~~~~~~~iii~th~~~~--i~~~-d~v~~~~~ 190 (198)
T cd03276 142 VFMDMVNRKISTDLLVKEA--KKQPGRQFIFITPQDISG--LASS-DDVKVFRM 190 (198)
T ss_pred cccCHHHHHHHHHHHHHHH--hcCCCcEEEEEECCcccc--cccc-cceeEEEe
Confidence 999999999999999873 32 24689999996666 7766 77777754
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=1.1e-23 Score=199.50 Aligned_cols=182 Identities=12% Similarity=-0.001 Sum_probs=108.6
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec-CCCcccceeehhhhhhhHhhhccceeeEeC--C-CCC
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS-SGNSSHTITMYMEEHNVMRSLQSGFCVYDS--R-GFN 168 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~-i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~--~-l~~ 168 (382)
...++ +++|+||||||||||+.+|+++.. +.|++...+.+ +.......... .. ...+.++|+.. . .+.
T Consensus 19 ~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~---~~---~~~v~~~f~~~~~~~~~~ 91 (247)
T cd03275 19 GPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPD---SN---SAYVTAVYEDDDGEEKTF 91 (247)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCC---Cc---eEEEEEEEEcCCCcEEEE
Confidence 33344 999999999999999999999987 67777654321 10000000000 00 01233333321 1 000
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCcccccccc--------------c-------cccccCCCccceeeecceeee
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND--------------A-------EIDDLKSSPKYVLRRVDFAMV 227 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--------------~-------~~~~~~~LSGGqkQRvaIAra 227 (382)
..++.+.... ..........+.+.++++.+|+... . .++++.+||||||||++||||
T Consensus 92 ~~~~~~~~~~--~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~a 169 (247)
T cd03275 92 RRIITGGSSS--YRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALL 169 (247)
T ss_pred EEEEECCceE--EEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHH
Confidence 0111111000 0000000111223344444444211 1 123458899999999999999
Q ss_pred ehhH----HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 228 VSNI----AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 228 L~~~----P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++.+ |+++|+|| +||+..+..+.+.|+++ .+.|.|+|+||||.++ ...||+++++..
T Consensus 170 l~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~---~~~g~~vi~isH~~~~---~~~~d~i~~~~~ 233 (247)
T cd03275 170 FAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQ---AGPNFQFIVISLKEEF---FSKADALVGVYR 233 (247)
T ss_pred HHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHh---ccCCcEEEEEECCHHH---HhhCCeEEEEEe
Confidence 9976 89999999 99999999999999998 3358999999997544 457888877754
No 389
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.8e-22 Score=198.64 Aligned_cols=187 Identities=17% Similarity=0.122 Sum_probs=146.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
++.+-+.+|+|.|++.. + .+++++|-|.--..+|||||||.||||||++|.|-+. ..|+..=+-+
T Consensus 584 PPvLGlH~VtFgy~gqk-p----LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr--------- 649 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQK-P----LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR--------- 649 (807)
T ss_pred CCeeecccccccCCCCC-c----hhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce---------
Confidence 56889999999997654 2 5899999999999999999999999999999999988 7887753322
Q ss_pred eehhhhhhhHhhhccceeeEeCC--CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSR--GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
-+||+.-|+.. |-...|-.|.+ ...+ .-..+.++..|-.+||..+...-.+..|||||+-
T Consensus 650 ------------L~iG~FdQh~~E~L~~Eetp~EyL---qr~F---Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKa 711 (807)
T KOG0066|consen 650 ------------LRIGWFDQHANEALNGEETPVEYL---QRKF---NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKA 711 (807)
T ss_pred ------------eeeechhhhhHHhhccccCHHHHH---HHhc---CCChHHHHHHhhhhhhhhccceEeeeecCCcchH
Confidence 36888777642 22223333332 2111 1233556778888999877665678899999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||++|-.-+..|+|||||| +||.++...+-+.|.++ +-.|||||||-++ +.+.+..++++.+
T Consensus 712 RValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney------~GgVi~VsHDeRL--i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 712 RVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY------NGGVIMVSHDERL--IVETDCNLWVVEN 776 (807)
T ss_pred HHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc------cCcEEEEecccce--eeecCceEEEEcc
Confidence 9999998899999999999 99999999999999986 4589999999888 7666556666655
No 390
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.83 E-value=2.6e-22 Score=181.01 Aligned_cols=205 Identities=15% Similarity=0.073 Sum_probs=150.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.+..|++.++.|+|.... + ++-|+|++++.|....+||.||||||||+|+|+|-.- -.|.|.+.|++.......
T Consensus 10 ~~~aievsgl~f~y~~~d-P----~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSD-P----IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSL 84 (291)
T ss_pred ccceEEEeccEEecccCC-c----eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccc
Confidence 356899999999997655 2 5899999999999999999999999999999999765 569999999865431111
Q ss_pred e-----eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcc
Q 016817 142 I-----TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 142 ~-----~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
. .+.-. ++++ ..++- -+..+-..+++...|. +-+-.+.++.+++++.+.+. +. .+.+.+|-
T Consensus 85 ~~Sgdl~YLGg---eW~~-~~~~a-gevplq~D~sae~mif------gV~g~dp~Rre~LI~iLDId--l~-WRmHkvSD 150 (291)
T KOG2355|consen 85 ESSGDLSYLGG---EWSK-TVGIA-GEVPLQGDISAEHMIF------GVGGDDPERREKLIDILDID--LR-WRMHKVSD 150 (291)
T ss_pred cccCceeEecc---cccc-ccccc-ccccccccccHHHHHh------hccCCChhHhhhhhhheecc--ce-EEEeeccc
Confidence 0 00000 1111 22221 1222333455444332 11112225566677777775 33 66799999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+||.|++.|++.=++||||| .||...+..+++.+++-+ .++|.||++.|| -++-.+....+++.+++
T Consensus 151 GqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEc--e~RgatIVYATH--IFDGLe~Wpthl~yi~~ 223 (291)
T KOG2355|consen 151 GQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEEC--EQRGATIVYATH--IFDGLETWPTHLVYIKS 223 (291)
T ss_pred cchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHH--hhcCcEEEEEee--eccchhhcchhEEEecC
Confidence 99999999999999999999999 999999999999999875 568999999999 66667778888887765
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.81 E-value=1.8e-22 Score=203.19 Aligned_cols=212 Identities=11% Similarity=0.054 Sum_probs=133.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--c-cceeeeEeecCCCccc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--R-SGLVLFAQTSSGNSSH 140 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~-~G~I~i~G~~i~~~~~ 140 (382)
...+.++|++++|.+.. .++|++|++.+|+.+||+|||||||||+|++|+|-.. + +=.+++-.+.+.....
T Consensus 73 s~dvk~~sls~s~~g~~------l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGVE------LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred cccceeeeeeeccCCce------eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchH
Confidence 45789999999996543 5999999999999999999999999999999998765 2 2223333332211000
Q ss_pred ce-eehhhhhhhHhhhccceeeEeCCCC-ChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccCCCcc
Q 016817 141 TI-TMYMEEHNVMRSLQSGFCVYDSRGF-NYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 141 ~~-~~~~~~~~~~r~~~ig~v~Q~~~l~-~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
.. ..........|. ++.+...+...+ +. .-.+-+........ .....+.++.++|--+|....+.++....|||
T Consensus 147 ~av~~v~~~~~~e~~-rle~~~E~l~~~~d~-~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 147 QAVQAVVMETDHERK-RLEYLAEDLAQACDD-KEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG 224 (614)
T ss_pred HHHHHHhhhhHHHHH-HHHHHHHHHHhhccc-hhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc
Confidence 00 000000000111 111111111100 00 00000100000000 11111223334455555544455589999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|.|++|||||..+|.+||||| +||+.+..-+-+.|.+. ...++++++|+.+. +-.+|..|+-+++
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-----d~~~lVi~sh~QDf--ln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-----DRIILVIVSHSQDF--LNGVCTNIIHLDN 294 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc-----cCceEEEEecchhh--hhhHhhhhheecc
Confidence 99999999999999999999999 99999999999999986 22289999996666 8899999998876
No 392
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.81 E-value=4.6e-22 Score=199.04 Aligned_cols=210 Identities=14% Similarity=0.094 Sum_probs=166.2
Q ss_pred CcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC-CCcc
Q 016817 62 APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS-GNSS 139 (382)
Q Consensus 62 ~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i-~~~~ 139 (382)
+.+..+++++++..-..+. ..+++|||+|.+||++||.|-.|-|-+.|+.+|+|+.+ .+|+|.++|+++ ...+
T Consensus 253 pg~~vL~V~~L~v~~~~~~-----~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRGV-----TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLS 327 (501)
T ss_pred CCCeEEEEeeeEeecCCCC-----ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCC
Confidence 3456889999988765432 15999999999999999999999999999999999997 789999999986 2111
Q ss_pred cceeehhhhhhhHhhhccceeeEeC---CCCChhhhhhhHHHHHhh---hh-cCcc----ccccccccCccccccccccc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDS---RGFNYNRVHEGLEELSSW---MS-EGVH----HNQRCLRSDDCALMKNDAEI 208 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~---~l~~~~tv~eni~~~~~~---~~-~~~~----~~~~~~~~l~~~~L~~~~~~ 208 (382)
..+.|...++|||.|- .+.+.+++.||+...... +. .+.- ..+...+.++.+++...-..
T Consensus 328 ---------~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~ 398 (501)
T COG3845 328 ---------PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD 398 (501)
T ss_pred ---------HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC
Confidence 1223445899999984 467789999999654321 01 1111 12334556777777532223
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
.+..+||||.+||+-+||-|..+|++||+.+ |||......|.+.|.+. ++.|+.|++||- +++++...||+|
T Consensus 399 ~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~---r~~G~AVLLiS~--dLDEil~lsDrI 473 (501)
T COG3845 399 APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL---RDAGKAVLLISE--DLDEILELSDRI 473 (501)
T ss_pred cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH---HhcCCEEEEEeh--hHHHHHHhhhee
Confidence 6678899999999999999999999999999 99999999999999998 668999999999 566699999999
Q ss_pred hhhhh
Q 016817 286 KICEY 290 (382)
Q Consensus 286 ~ll~~ 290 (382)
.+|.+
T Consensus 474 aVi~~ 478 (501)
T COG3845 474 AVIYE 478 (501)
T ss_pred eeeeC
Confidence 99987
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.6e-22 Score=199.29 Aligned_cols=189 Identities=14% Similarity=0.031 Sum_probs=132.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~ 144 (382)
..|.+.+++..|+++. +|.+-++++..|..+||+|+||+|||||||+|+. |.|.....+
T Consensus 79 ~Di~~~~fdLa~G~k~------LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~ve---------- 137 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKI------LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVE---------- 137 (582)
T ss_pred cceeeeeeeeeecchh------hhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----cCcCccCch----------
Confidence 3677888999997543 6999999999999999999999999999999996 555443321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
++ .|...+-. .|+ .+.....+.+-+..-. .+..+....+...++|.-+|..+.+..++..+||||=|-|++|
T Consensus 138 --qE---~~g~~t~~-~~~-~l~~D~~~~dfl~~e~-~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaL 209 (582)
T KOG0062|consen 138 --QE---VRGDDTEA-LQS-VLESDTERLDFLAEEK-ELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLAL 209 (582)
T ss_pred --hh---eeccchHH-Hhh-hhhccHHHHHHHHhhh-hhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHH
Confidence 00 00000000 011 1112222222221100 0000101112223377788888776668889999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||..+|+|||||| .||..+..-+.+.|... +.|+|+||||-.+ ....|.-|+-+++
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~------~~T~liVSHDr~F--Ln~V~tdIIH~~~ 270 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW------KITSLIVSHDRNF--LNTVCTDIIHLEN 270 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC------CceEEEEeccHHH--HHHHHHHHHHHhh
Confidence 999999999999999 89999999999999986 4899999998777 8888888887776
No 394
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=5.5e-22 Score=216.37 Aligned_cols=91 Identities=8% Similarity=-0.075 Sum_probs=77.4
Q ss_pred ccccCccccccccccccccCCCccceeeecceeeeehh---HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCe
Q 016817 193 CLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN---IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPI 266 (382)
Q Consensus 193 ~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~---~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~ti 266 (382)
..++++.+||.....++.+.+|||||+||++||++|+. +|+++|||| +||+..+..+++.|+++ .+.|.||
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l---~~~G~TV 884 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL---VDQGNTV 884 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEE
Confidence 34567788887532348899999999999999999997 499999999 99999999999999998 4468999
Q ss_pred EEEecCCCCChhhhhhhhhhhhh
Q 016817 267 LILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 267 IiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|+||||++. +. .+|+++.|.
T Consensus 885 Ivi~H~~~~--i~-~aD~ii~Lg 904 (924)
T TIGR00630 885 VVIEHNLDV--IK-TADYIIDLG 904 (924)
T ss_pred EEEeCCHHH--HH-hCCEEEEec
Confidence 999997765 64 688888883
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.2e-21 Score=196.31 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=154.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..+.+++.+|+|.|..+... .+.+++++++.-+.++++|+||+||||+++++.|-.. ++|.+.+.++
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~----~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r-------- 426 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQ----WRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR-------- 426 (582)
T ss_pred CCCeeEEEeeeccCCCcchh----hhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc--------
Confidence 35789999999999876532 5999999999999999999999999999999999777 7888876654
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.+|+|.+|...=+-.+.+.. +.+.. ....+. .++.+++.+..+||...+..+.+.+||||||=|
T Consensus 427 -------------~ri~~f~Qhhvd~l~~~v~~-vd~~~-~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsr 490 (582)
T KOG0062|consen 427 -------------LRIKYFAQHHVDFLDKNVNA-VDFME-KSFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSR 490 (582)
T ss_pred -------------ceecchhHhhhhHHHHHhHH-HHHHH-HhCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhH
Confidence 47899888643222233221 11111 111232 456778889999998766657778999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|++|....++|.+|+||| .||..+...+-+.|++. +-.|||||||.++ +...|+.+++.++
T Consensus 491 vafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F------~GGVv~VSHd~~f--i~~~c~E~Wvve~ 554 (582)
T KOG0062|consen 491 VAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF------NGGVVLVSHDEEF--ISSLCKELWVVED 554 (582)
T ss_pred HHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc------CCcEEEEECcHHH--HhhcCceeEEEcC
Confidence 999999999999999999 89999999999999986 4589999998777 9999999998876
No 396
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.78 E-value=8.7e-21 Score=190.29 Aligned_cols=187 Identities=15% Similarity=0.045 Sum_probs=130.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
|.++|+-.--+.++ + ++..++|+|++|-.+.|+||||||||+|+|+|.|++| ..|...+--.
T Consensus 482 I~lenIpvItP~~~--v---vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~------------ 544 (728)
T KOG0064|consen 482 IILENIPVITPAGD--V---LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP------------ 544 (728)
T ss_pred eEEecCceeccCcc--e---eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC------------
Confidence 55556555544444 2 5889999999999999999999999999999999999 7887654211
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHh--hhhcCccccccccccCcccccccccccc---------ccCCC
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSS--WMSEGVHHNQRCLRSDDCALMKNDAEID---------DLKSS 214 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~~L 214 (382)
.++-|+||.|+.- ..|.+|.|-+.-. .+....-.++.....|+.+.|+..+. + .-..|
T Consensus 545 ---------~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q-r~~g~da~~dWkd~L 613 (728)
T KOG0064|consen 545 ---------NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ-REGGWDAVRDWKDVL 613 (728)
T ss_pred ---------cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH-hccChhhhccHHhhc
Confidence 2678889987644 4566665533210 01111112234455666666653221 2 12359
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||+++||.+.++|+.-+||| +.-+..+..+.+..++ .|.+.|-|||.+.+ . .+-..+.-.++
T Consensus 614 sgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~------~gi~llsithrpsl--w-k~h~~ll~~dg 683 (728)
T KOG0064|consen 614 SGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD------AGISLLSITHRPSL--W-KYHTHLLEFDG 683 (728)
T ss_pred cchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh------cCceEEEeecCccH--H-HHHHHHHhccC
Confidence 9999999999999999999999999 6666667788888877 48999999995444 3 34555544443
No 397
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.78 E-value=1.2e-20 Score=184.88 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=128.7
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---------ccceeeeEeecCCCc
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---------RSGLVLFAQTSSGNS 138 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---------~~G~I~i~G~~i~~~ 138 (382)
++..+..+|+.....++-.+|+|+||+|++|++++|+|+||||||||+++|.|... ++|.|.+--..
T Consensus 379 e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---- 454 (593)
T COG2401 379 EFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---- 454 (593)
T ss_pred HHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc----
Confidence 55666666655433322236999999999999999999999999999999999853 35555542110
Q ss_pred ccceeehhhhhhhHhhhccceeeEe--CCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccc-ccccccCCCc
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCVYD--SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKND-AEIDDLKSSP 215 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~Q~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~LS 215 (382)
--++++-. +. |..-|+.+.+. ....+-..+.+++.++|+.+. +-.+.+++||
T Consensus 455 -----------------~~a~iPge~Ep~-f~~~tilehl~-------s~tGD~~~AveILnraGlsDAvlyRr~f~ELS 509 (593)
T COG2401 455 -----------------VSALIPGEYEPE-FGEVTILEHLR-------SKTGDLNAAVEILNRAGLSDAVLYRRKFSELS 509 (593)
T ss_pred -----------------hhhccCcccccc-cCchhHHHHHh-------hccCchhHHHHHHHhhccchhhhhhccHhhcC
Confidence 11223322 21 22334444431 122222335567888888763 2237789999
Q ss_pred cceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
-|||.|+.||++++..|.+++.|| .||+.+...+..-|.+++ ++.|.|+++|||.+++
T Consensus 510 tGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela--Re~giTlivvThrpEv 570 (593)
T COG2401 510 TGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA--REAGITLIVVTHRPEV 570 (593)
T ss_pred cchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH--HHhCCeEEEEecCHHH
Confidence 999999999999999999999999 899999999999999995 6789999999997776
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=5.6e-21 Score=189.17 Aligned_cols=195 Identities=14% Similarity=0.090 Sum_probs=128.0
Q ss_pred HHhhhcccCCeeeecCCcccCCCC-CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee----
Q 016817 71 HKFLSYRSGDFWIPIGGIQKGGMD-IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM---- 144 (382)
Q Consensus 71 nvs~~y~~~~~~v~~~vL~~isl~-i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~---- 144 (382)
++..+|+.++.. |. .|- ..+|+++||+||||-||||-+|+|+|.+. .=|+- ++.+ ++......
T Consensus 79 e~vHRYg~NgFk-----L~--~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp--~wdeVi~~FrGt 147 (591)
T COG1245 79 EVVHRYGVNGFK-----LY--RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP--SWDEVIKRFRGT 147 (591)
T ss_pred cceeeccCCceE-----Ee--cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC--CHHHHHHHhhhh
Confidence 567889766522 32 333 35899999999999999999999999987 55543 1110 00000000
Q ss_pred hhhhh-hhHhhhcc--ceeeEeCCCCC---hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce
Q 016817 145 YMEEH-NVMRSLQS--GFCVYDSRGFN---YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 145 ~~~~~-~~~r~~~i--g~v~Q~~~l~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
..+.. ..+....+ ..=+|-..+.| ..+|.+.+. .....-...++.++++|.+.++ +.+++|||||
T Consensus 148 ELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk--------~~de~g~~devve~l~L~nvl~-r~v~~LSGGE 218 (591)
T COG1245 148 ELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLK--------KVDERGKFDEVVERLGLENVLD-RDVSELSGGE 218 (591)
T ss_pred HHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHH--------hhhhcCcHHHHHHHhcchhhhh-hhhhhcCchH
Confidence 00000 00000011 11112111111 123333221 1112234667888999997765 9999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.||+|||.|++++++++++|| .||...+-..-+++++++ +.+++||+|.||+.. ...++|-|.++-+
T Consensus 219 LQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~---~~~k~ViVVEHDLav--LD~lsD~vhI~YG 288 (591)
T COG1245 219 LQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA---EDGKYVIVVEHDLAV--LDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHh---ccCCeEEEEechHHH--HHHhhheeEEEec
Confidence 999999999999999999999 899999999999999994 348999999997665 6667887777644
No 399
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=2.3e-19 Score=196.22 Aligned_cols=188 Identities=14% Similarity=0.039 Sum_probs=150.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+|+|+|.-+++|+.+.++||.|||||||+++++|-.+ . .|+|.+||.+.++... + +.++|+.|
T Consensus 130 il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~------------~-~~~aY~~e 196 (1391)
T KOG0065|consen 130 ILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP------------K-KTVAYNSE 196 (1391)
T ss_pred eecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc------------C-ceEEeccc
Confidence 6999999999999999999999999999999999886 2 7899999997654332 1 47999999
Q ss_pred eCCCCChhhhhhhHHHHHhhhhcC-----ccccc----cccccCcccccccc----ccccccCCCccceeeecceeeeeh
Q 016817 163 DSRGFNYNRVHEGLEELSSWMSEG-----VHHNQ----RCLRSDDCALMKND----AEIDDLKSSPKYVLRRVDFAMVVS 229 (382)
Q Consensus 163 ~~~l~~~~tv~eni~~~~~~~~~~-----~~~~~----~~~~~l~~~~L~~~----~~~~~~~~LSGGqkQRvaIAraL~ 229 (382)
+..-+|.+||+|-+.+.+.....+ ..+++ ..+.+++.+||+.- ..|......|||||+||++|-+++
T Consensus 197 ~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 197 QDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred cccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 988899999999999877543321 11222 23467888898753 334566779999999999999999
Q ss_pred hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 230 NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 230 ~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.+|+++.+|| |||..+.-++.+.|++++ +..+.|++++-|.+..+. ...-|.|.+|.+
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a--~~~~~t~~vsi~Q~s~~~-~~lFD~v~lL~e 337 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLA--HITGATALVSILQPSPEI-YDLFDDVILLSE 337 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHH--hhhcceEEEEeccCChHH-HHhhhheeeeec
Confidence 9999999999 999999999999999995 556889999999776654 444444444443
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.70 E-value=4.6e-19 Score=162.62 Aligned_cols=141 Identities=11% Similarity=-0.008 Sum_probs=99.9
Q ss_pred cccCCCCCCcee-eeeeecccCCCchhHHHHHH-Hhhc-ccce-eeeEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 88 IQKGGMDIPPVI-TILLMGFSGSGKSSLVNLMY-SVLS-RSGL-VLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 88 L~~isl~i~~Ge-~~alvGpnGsGKSTLl~~i~-Gl~~-~~G~-I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
+-++||++.+|+ +++|+||||||||||+|+|+ +.+- ..|- +-... ...++|..|.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~---------------------~~~~~~~~~~ 75 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE---------------------GSSLPVFENI 75 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc---------------------cccCcCccEE
Confidence 557899999994 89999999999999999998 2222 2331 11000 0023333332
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
+..++..+.+. ...+++|+||+|++.|++++ .+|+++++|| +
T Consensus 76 ---------------------------------~~~lg~~~~l~-~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 76 ---------------------------------FADIGDEQSIE-QSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred ---------------------------------EEecCchhhhh-cCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 11222333333 66789999999999999885 7899999999 9
Q ss_pred CCCCcchhhh-hhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 241 GDSKPLDATK-RLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 241 LD~~~~~~i~-~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|+..+..+. ..++.+ .+.|.|+|++||+.+ +..++++++.+++
T Consensus 121 lD~~~~~~i~~~~l~~l---~~~~~~vi~~tH~~~---l~~~~d~~~~l~~ 165 (200)
T cd03280 121 TDPVEGAALAIAILEEL---LERGALVIATTHYGE---LKAYAYKREGVEN 165 (200)
T ss_pred CCHHHHHHHHHHHHHHH---HhcCCEEEEECCHHH---HHHHHhcCCCeEE
Confidence 9999999886 467776 345899999999633 5567888888865
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.66 E-value=9.1e-19 Score=162.45 Aligned_cols=73 Identities=4% Similarity=-0.106 Sum_probs=58.8
Q ss_pred ccccCCCccceeeecceeeee----hhHHHHHHHHh---cCCCCcchhhhhhccCccccccCC-CCeEEEecCCCCChhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVV----SNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNE-NPILILTHGDMLSTEE 279 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL----~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g-~tiIiiTHd~~l~~~~ 279 (382)
+..|.+||||||||+.+|++| +.+|+++|+|| +||+.++..+++.|.++. ++.| .|+|++|||+.. ..
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~--~~~g~~~viiith~~~~--~~ 196 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETA--CKEGTSQYFLITPKLLP--GL 196 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHh--hcCCCceEEEEchhhcc--CC
Confidence 467899999999998877554 57999999999 999999999999999973 3324 589999997655 55
Q ss_pred hhhhh
Q 016817 280 RLDAR 284 (382)
Q Consensus 280 ~~~d~ 284 (382)
..+++
T Consensus 197 ~~~~~ 201 (213)
T cd03277 197 NYHEK 201 (213)
T ss_pred cccCc
Confidence 55543
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.65 E-value=1.6e-18 Score=159.15 Aligned_cols=131 Identities=19% Similarity=0.110 Sum_probs=90.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+++|++|+. |++++|+||||||||||+|+|+|... +...|.++. .-.+++|...+
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~----l~~~G~~v~-------------------a~~~~~q~~~l 70 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI----LAQAGAPVC-------------------ASSFELPPVKI 70 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH----HHHcCCEEe-------------------cCccCcccceE
Confidence 588888876 69999999999999999999998764 122343221 11356776678
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
|+.+|+.+|+......+. ...+++.++++.+++ .+|+++|+|| ++|+
T Consensus 71 ~~~~~~~d~l~~~~s~~~---~e~~~~~~iL~~~~~---------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 71 FTSIRVSDDLRDGISYFY---AELRRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred EEeccchhccccccChHH---HHHHHHHHHHHhccC---------------------------CCCeEEEEecccCCCCH
Confidence 888999999854321110 001223333333321 7999999999 9999
Q ss_pred Ccchhhh-hhccCccccccCCCCeEEEecCCCC
Q 016817 244 KPLDATK-RLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 244 ~~~~~i~-~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
..+..+. .+++.+ .+.|.|+|++||++++
T Consensus 121 ~~~~~l~~~ll~~l---~~~~~tiiivTH~~~~ 150 (199)
T cd03283 121 RERQAASAAVLKFL---KNKNTIGIISTHDLEL 150 (199)
T ss_pred HHHHHHHHHHHHHH---HHCCCEEEEEcCcHHH
Confidence 9988765 467776 3458999999997665
No 403
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=9.8e-18 Score=165.40 Aligned_cols=205 Identities=13% Similarity=0.001 Sum_probs=144.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHh-hc--ccceeeeEeecCCCcc-c-
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LS--RSGLVLFAQTSSGNSS-H- 140 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl-~~--~~G~I~i~G~~i~~~~-~- 140 (382)
.|.++|.+.+-.++. .+.+.||.|-.|..+|+|||||-||||||+.|+.- +. +.=.|++..+.+.... .
T Consensus 264 DIKiEnF~ISA~Gk~------LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQGKL------LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeecccce------eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 577788777765443 48899999999999999999999999999999854 22 4455666555442111 0
Q ss_pred ceee---hhhhhh---hHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cC-ccccccccccCccccccccccccccC
Q 016817 141 TITM---YMEEHN---VMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EG-VHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 141 ~~~~---~~~~~~---~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~-~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
.... ....+. +.+. ..+-+-+ ...|+.|.+.....-+. .+ ...+.+++++|.-+|+...+.+++..
T Consensus 338 i~tvl~aD~kRl~lLeee~~-L~~q~e~-----Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAK-LMSQIEE-----GDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTT 411 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHH-HHHHHHc-----CchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcc
Confidence 0000 000000 0111 1111111 33566666654432222 12 23445778889999998877778888
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
.+|||-|-||++||||..+|-+|+||| .||.....-+-+.|..+ .+|.+|||||..+ ....|..|+-++
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW------kKTLLIVSHDQgF--LD~VCtdIIHLD 483 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW------KKTLLIVSHDQGF--LDSVCTDIIHLD 483 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh------hheeEEEecccch--HHHHHHHHhhhh
Confidence 899999999999999999999999999 89999888888888876 4799999998877 888898888887
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 484 ~ 484 (807)
T KOG0066|consen 484 N 484 (807)
T ss_pred h
Confidence 6
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.65 E-value=3.6e-18 Score=154.15 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=60.9
Q ss_pred Cccceeeecceeeeeh----hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVS----NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 214 LSGGqkQRvaIAraL~----~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
|||||+||++|||+++ .+|+++++|| +||+..+..+.+.|.++ .+.|.|+|++||+++. +. .+|+++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~---~~~g~tiIiiSH~~~~--~~-~adrvi 168 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM---AKHTSQFIVITLKKEM--FE-NADKLI 168 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEECCHHH--Hh-hCCeEE
Confidence 9999999999999996 5899999999 99999999999999987 3347899999997654 54 677777
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
.+..
T Consensus 169 ~i~~ 172 (178)
T cd03239 169 GVLF 172 (178)
T ss_pred EEEE
Confidence 6643
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.3e-17 Score=160.55 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=61.3
Q ss_pred CCCccceeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
..|||||+||++||++++. +|+++++|| +||+..+..+.+.|+++. .+.|+|+||||+.+ . .++|+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~----~~~tii~isH~~~~--~-~~~d~ 241 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS----RSHQVLCITHLPQV--A-AMADN 241 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEechHHH--H-HhcCc
Confidence 3499999999999997654 999999999 999999999999999873 36899999997654 4 57777
Q ss_pred hhhhhh
Q 016817 285 LKICEY 290 (382)
Q Consensus 285 v~ll~~ 290 (382)
++++.+
T Consensus 242 ~~~l~~ 247 (276)
T cd03241 242 HFLVEK 247 (276)
T ss_pred EEEEEE
Confidence 777765
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.62 E-value=5.6e-18 Score=150.39 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=93.4
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccce-eeEeCCCCCh
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF-CVYDSRGFNY 169 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~-v~Q~~~l~~~ 169 (382)
++.+.++.++.|+|||||||||+++.+....- ..|.+..... .+.|+ +++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~---------------------~~~g~~~~~~~~~~-- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG---------------------VKAGCIVAAVSAEL-- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc---------------------ccCCCcceeeEEEE--
Confidence 34445567999999999999999999877665 5554433110 01121 11111000
Q ss_pred hhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehh----HHHHHHHHh---cCC
Q 016817 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN----IAEIYKALK---AGD 242 (382)
Q Consensus 170 ~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~----~P~iLLLDE---~LD 242 (382)
+ ....+||+||+||++||++|+. +|+++|+|| ++|
T Consensus 72 --------------------------------i------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld 113 (162)
T cd03227 72 --------------------------------I------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLD 113 (162)
T ss_pred --------------------------------e------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCC
Confidence 0 0112399999999999999987 789999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+..+..+.+.+.++. .+ +.++|++||++++ .. .+|+++.|..
T Consensus 114 ~~~~~~l~~~l~~~~--~~-~~~vii~TH~~~~--~~-~~d~~~~l~~ 155 (162)
T cd03227 114 PRDGQALAEAILEHL--VK-GAQVIVITHLPEL--AE-LADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHHHHH--hc-CCEEEEEcCCHHH--HH-hhhhEEEEEE
Confidence 999999999999873 33 7899999997766 54 4677776654
No 407
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.56 E-value=7.3e-17 Score=148.74 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=96.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+.+|++|++++|++++|+||||+||||++++++++.- .. ++|+-. |..
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-----------------------------la-~~G~~v--pa~ 65 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-----------------------------MA-QIGCFV--PAE 65 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-----------------------------HH-HcCCCc--chh
Confidence 5999999999999999999999999999999998741 11 344321 233
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
++.+++.+++ +..++..+... +..+.+|+|++|+. .+.+++.+|+++|+|| ++|+
T Consensus 66 ~~~l~~~d~I--------------------~~~~~~~d~~~-~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 66 YATLPIFNRL--------------------LSRLSNDDSME-RNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hcCccChhhe--------------------eEecCCccccc-hhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCH
Confidence 3434444444 22333443344 66788999999764 4556788999999999 8999
Q ss_pred Ccchhh-hhhccCccccccCCCCeEEEecCCCCChhhhhh
Q 016817 244 KPLDAT-KRLFSAPGLRKCNENPILILTHGDMLSTEERLD 282 (382)
Q Consensus 244 ~~~~~i-~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~ 282 (382)
.....+ ...++.+ .+.|.++|++||+.++ +..++
T Consensus 124 ~~~~~l~~~il~~l---~~~~~~~i~~TH~~~l--~~~~~ 158 (204)
T cd03282 124 ADGFAISLAILECL---IKKESTVFFATHFRDI--AAILG 158 (204)
T ss_pred HHHHHHHHHHHHHH---HhcCCEEEEECChHHH--HHHhh
Confidence 765554 3456665 3458999999997766 54433
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.56 E-value=2.2e-16 Score=180.30 Aligned_cols=91 Identities=10% Similarity=-0.066 Sum_probs=76.4
Q ss_pred cccCccccccccccccccCCCccceeeecceeeeehhH---HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeE
Q 016817 194 LRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNI---AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPIL 267 (382)
Q Consensus 194 ~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~---P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiI 267 (382)
.+.|..+||.-.-..++..+|||||.||+-||.-|..+ +.+++||| +|++.....+++.|.+| .+.|.|||
T Consensus 1680 L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L---~~~g~tvi 1756 (1809)
T PRK00635 1680 LQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTL---VSLGHSVI 1756 (1809)
T ss_pred HHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH---HhcCCeEE
Confidence 45677888875434588889999999999999999865 78999999 99999999999999999 56899999
Q ss_pred EEecCCCCChhhhhhhhhhhhhh
Q 016817 268 ILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 268 iiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|.||+++ +.. ||.|+=|..
T Consensus 1757 vieH~~~~--i~~-aD~iidlgp 1776 (1809)
T PRK00635 1757 YIDHDPAL--LKQ-ADYLIEMGP 1776 (1809)
T ss_pred EEeCCHHH--HHh-CCEEEEcCC
Confidence 99997776 664 777776653
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.55 E-value=8.7e-17 Score=147.66 Aligned_cols=138 Identities=11% Similarity=0.020 Sum_probs=88.7
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 168 (382)
.|+++.+|++++|+||||||||||+++|++..- ..|..... . + ..+++..|....+
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-~-------------------~-~~i~~~dqi~~~~- 79 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-E-------------------S-ASIPLVDRIFTRI- 79 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-c-------------------c-cccCCcCEEEEEe-
Confidence 355666899999999999999999999996542 34432211 0 0 1445543322111
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCc
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKP 245 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~ 245 (382)
. ..+... ...+.+|++++| +..+.+++.+|+++|+|| ++|+..
T Consensus 80 --~------------------------------~~d~i~-~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~ 125 (202)
T cd03243 80 --G------------------------------AEDSIS-DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAE 125 (202)
T ss_pred --c------------------------------Cccccc-CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHH
Confidence 1 111122 334556777776 555567788999999999 899998
Q ss_pred chhhhh-hccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 246 LDATKR-LFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 246 ~~~i~~-~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
...+.. +++.+ .+.+.++|++||+.++ +. .++++..++.
T Consensus 126 ~~~l~~~ll~~l---~~~~~~vi~~tH~~~~--~~-~~~~~~~l~~ 165 (202)
T cd03243 126 GLAIAYAVLEHL---LEKGCRTLFATHFHEL--AD-LPEQVPGVKN 165 (202)
T ss_pred HHHHHHHHHHHH---HhcCCeEEEECChHHH--HH-HhhcCCCeEE
Confidence 887755 45555 3458899999997655 55 4455544443
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.55 E-value=1.2e-16 Score=149.23 Aligned_cols=140 Identities=13% Similarity=0.038 Sum_probs=101.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccc-eeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG-FCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig-~v~Q~~~ 165 (382)
+.+|+++++++|++++|.||||+|||||++.|+-. . +.. ++| |||.+..
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-------~----------------------~la-~~g~~vpa~~~ 68 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-------V----------------------LMA-QIGCFVPCDSA 68 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-------H----------------------HHH-HhCCCcCcccE
Confidence 58999999999999999999999999999999821 0 111 455 5555432
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee--hhHHHHHHHHh----
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV--SNIAEIYKALK---- 239 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL--~~~P~iLLLDE---- 239 (382)
.++ .+.+++..+++.+. ....+|.|++|++.+|+++ +.+|+++||||
T Consensus 69 ~~~-----------------------~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 69 DIP-----------------------IVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred EEe-----------------------ccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 111 12345566676643 3578999999999999999 89999999999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++|+...... .++.+. ++.|.++|++||+ .++.++|+++..+++
T Consensus 122 T~~lD~~~~~~~--il~~l~--~~~~~~vlisTH~---~el~~~~~~~~~i~~ 167 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIA--TQIKCFCLFATHF---HELTALADEVPNVKN 167 (222)
T ss_pred CChHHHHHHHHH--HHHHHH--hcCCCeEEEEech---HHHHHHhhcCCCeEE
Confidence 4887766432 233331 2257899999994 336778888887766
No 411
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.47 E-value=8e-16 Score=151.72 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=125.7
Q ss_pred cccCCCCCCce-----eeeeeecccCCCchhHHHHHHHhhc-cc-ceeeeEeecCCCcccceeehhhhhhhHhhhcccee
Q 016817 88 IQKGGMDIPPV-----ITILLMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFC 160 (382)
Q Consensus 88 L~~isl~i~~G-----e~~alvGpnGsGKSTLl~~i~Gl~~-~~-G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v 160 (382)
+.+..|.|+.| |++..+|.||.|||||+++++|.++ ++ |+|-. -.++|=
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~------------------------lnVSyk 407 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV------------------------LNVSYK 407 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc------------------------cceecc
Confidence 66777777766 5789999999999999999999887 53 44422 145566
Q ss_pred eEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-
Q 016817 161 VYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK- 239 (382)
Q Consensus 161 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE- 239 (382)
+|...-=...||++-+..-.+ ....+.+-+.++++-+.+++.. |+.+.+||||++||||||.+|-..+++++.||
T Consensus 408 pqkispK~~~tvR~ll~~kIr---~ay~~pqF~~dvmkpL~ie~i~-dqevq~lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIR---DAYMHPQFVNDVMKPLQIENII-DQEVQGLSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred ccccCccccchHHHHHHHHhH---hhhcCHHHHHhhhhhhhHHHHH-hHHhhcCCchhhHHHHHHHhcCCCCceEEecCc
Confidence 665432223566655432211 1111224455677777777554 48999999999999999999999999999999
Q ss_pred --cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 --AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 --~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
-||.+.+...-..+++.. -..++|-.+|.||.-+ +...+|++++.++
T Consensus 484 sAylDSeQRi~AskvikRfi--lhakktafvVEhdfIm--aTYladrvivf~G 532 (592)
T KOG0063|consen 484 SAYLDSEQRIIASKVIKRFI--LHAKKTAFVVEHDFIM--ATYLADRVIVFEG 532 (592)
T ss_pred hhhcChHHHHHHHHHHHHHH--HhccchhhhhhhHHHH--HHhhcceeEEEec
Confidence 799999888777777764 2356899999997666 6678899998876
No 412
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.44 E-value=4.8e-15 Score=155.79 Aligned_cols=89 Identities=8% Similarity=-0.062 Sum_probs=73.0
Q ss_pred ccCccccccccccccccCCCccceeeecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEE
Q 016817 195 RSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILI 268 (382)
Q Consensus 195 ~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIi 268 (382)
+.|..+||.-.-..++..+|||||.|||-||.-|.... -++|||| ||-..-...+++.|.+| .+.|.|||+
T Consensus 804 qtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rL---vd~GnTViV 880 (935)
T COG0178 804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL---VDKGNTVIV 880 (935)
T ss_pred HHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEE
Confidence 34556777632223778889999999999999999887 8999999 99999999999999999 568999999
Q ss_pred EecCCCCChhhhhhhhhhhhh
Q 016817 269 LTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 269 iTHd~~l~~~~~~~d~v~ll~ 289 (382)
|.|++++ +. .||.|+=+-
T Consensus 881 IEHNLdV--Ik-~AD~IIDLG 898 (935)
T COG0178 881 IEHNLDV--IK-TADWIIDLG 898 (935)
T ss_pred Eecccce--Ee-ecCEEEEcC
Confidence 9997766 55 677666553
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.44 E-value=6.3e-15 Score=141.25 Aligned_cols=144 Identities=13% Similarity=0.106 Sum_probs=93.4
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
..++|+||||||||||+++|+|++. .+|+|.++|+++.... ...++.. .+++++|+. ++...+|.+|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d--------~~~ei~~-~~~~~~q~~-~~~r~~v~~~~~ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVD--------ERSEIAG-CVNGVPQHD-VGIRTDVLDGCP 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecch--------hHHHHHH-Hhccccccc-ccccccccccch
Confidence 5789999999999999999999999 8999999999764211 1122332 577888853 344445444321
Q ss_pred HHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHhcCCCCcchhhhhhccCcc
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPG 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~ 257 (382)
. ..|+ ..++|+ ++|+++++|| +.....+..+++.+
T Consensus 182 k------------------------------------~~~~---~~~i~~--~~P~villDE---~~~~e~~~~l~~~~- 216 (270)
T TIGR02858 182 K------------------------------------AEGM---MMLIRS--MSPDVIVVDE---IGREEDVEALLEAL- 216 (270)
T ss_pred H------------------------------------HHHH---HHHHHh--CCCCEEEEeC---CCcHHHHHHHHHHH-
Confidence 0 0011 222333 6999999999 33445566666665
Q ss_pred ccccCCCCeEEEecCCCCChh-----------hhhhhhhhhhhh-ccccccccee
Q 016817 258 LRKCNENPILILTHGDMLSTE-----------ERLDARLKICEY-LGVSEISGVY 300 (382)
Q Consensus 258 ~~~~~g~tiIiiTHd~~l~~~-----------~~~~d~v~ll~~-~~~~~~~~v~ 300 (382)
. .|.|+|++||+..+..+ ..+++++++|++ -..+.+++++
T Consensus 217 --~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~~~g~~~~i~ 268 (270)
T TIGR02858 217 --H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRKGPGTVEAVY 268 (270)
T ss_pred --h-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCCCCCceeecc
Confidence 2 58999999997666444 245677777765 3344444443
No 414
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.43 E-value=3.8e-14 Score=117.05 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=59.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+|++++|++++|++++|+||||||||||++++. +|++.++|.++...... + .+ +.+++++|+ +
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~------~---~~-~~~~~~~q~--l 66 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIRED------S---KD-ELIGRNPEL--G 66 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhh------h---cC-CEEEEechh--c
Confidence 699999999999999999999999999999987 89999999876432211 1 12 356777777 5
Q ss_pred CChhhhhhhHHH
Q 016817 167 FNYNRVHEGLEE 178 (382)
Q Consensus 167 ~~~~tv~eni~~ 178 (382)
|+ .|+++||..
T Consensus 67 f~-~ti~~Ni~~ 77 (107)
T cd00820 67 LE-IRLRLNIFL 77 (107)
T ss_pred ch-hhHHhhcee
Confidence 55 799999964
No 415
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=1.3e-14 Score=139.13 Aligned_cols=63 Identities=10% Similarity=-0.094 Sum_probs=50.4
Q ss_pred cCCCccceeeecceeeeeh---------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChh
Q 016817 211 LKSSPKYVLRRVDFAMVVS---------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTE 278 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~---------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~ 278 (382)
...||+||||+++|||+|+ .+|+++|+|| +||+..+..+.+.|+++ + .+++++|+... +
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~------~-q~ii~~~~~~~--~ 251 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR------V-QTFVTTTDLAD--F 251 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC------C-CEEEEeCCchh--c
Confidence 4458999999999999986 6999999999 99999999999999886 2 45666664333 4
Q ss_pred hhhh
Q 016817 279 ERLD 282 (382)
Q Consensus 279 ~~~~ 282 (382)
..+|
T Consensus 252 ~~~~ 255 (270)
T cd03242 252 DALW 255 (270)
T ss_pred cchh
Confidence 4444
No 416
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=4.2e-14 Score=154.98 Aligned_cols=87 Identities=6% Similarity=-0.094 Sum_probs=76.2
Q ss_pred cCccccccccccccccCCCccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEe
Q 016817 196 SDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILT 270 (382)
Q Consensus 196 ~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiT 270 (382)
.+..+||.....++.+.+|||||+|||.||++|+.+| ++||||| +||+.....+.+.|+++ ++.|.|||+|+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L---~~~G~TVIvVe 546 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL---RDLGNTVIVVE 546 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHH---HhCCCEEEEEE
Confidence 4678888744235999999999999999999999986 8999999 99999999999999998 44699999999
Q ss_pred cCCCCChhhhhhhhhhhh
Q 016817 271 HGDMLSTEERLDARLKIC 288 (382)
Q Consensus 271 Hd~~l~~~~~~~d~v~ll 288 (382)
||++. +. .||++++|
T Consensus 547 Hd~~~--i~-~aD~vi~L 561 (924)
T TIGR00630 547 HDEET--IR-AADYVIDI 561 (924)
T ss_pred CCHHH--Hh-hCCEEEEe
Confidence 97655 65 79999998
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.29 E-value=1e-13 Score=128.92 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=81.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+.+|++|++++ ++++|+||||||||||+|+|+++.- ..|... -. .+ ..++++.|
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~v-p~-------------------~~-~~i~~~~~-- 75 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFV-PA-------------------SK-AEIGVVDR-- 75 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCee-cc-------------------cc-ceecceee--
Confidence 58999999987 8999999999999999999998653 222210 00 00 25677655
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee--hhHHHHHHHHh---
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV--SNIAEIYKALK--- 239 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL--~~~P~iLLLDE--- 239 (382)
+|+++++.+++.... |.=...++.+++++ +.+|+++||||
T Consensus 76 -i~~~~~~~~~ls~g~----------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~ 120 (216)
T cd03284 76 -IFTRIGASDDLAGGR----------------------------------STFMVEMVETANILNNATERSLVLLDEIGR 120 (216)
T ss_pred -EeccCCchhhhccCc----------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 345566655553210 00001111222222 46899999999
Q ss_pred ---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 ---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 ---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++|... ....+++.+. +..+.++|++||+.++ ..+++++..+++
T Consensus 121 gt~~lD~~~--~~~~il~~l~--~~~~~~vi~~TH~~~l---~~l~~~~~~v~~ 167 (216)
T cd03284 121 GTSTYDGLS--IAWAIVEYLH--EKIGAKTLFATHYHEL---TELEGKLPRVKN 167 (216)
T ss_pred CCChHHHHH--HHHHHHHHHH--hccCCcEEEEeCcHHH---HHHhhcCCCeEE
Confidence 355433 1233344441 2237899999997544 445666544444
No 418
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.29 E-value=4.3e-14 Score=155.14 Aligned_cols=88 Identities=7% Similarity=-0.068 Sum_probs=77.5
Q ss_pred ccCccccccccccccccCCCccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEE
Q 016817 195 RSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILIL 269 (382)
Q Consensus 195 ~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIii 269 (382)
++++.+||.....++.+.+|||||+|||+||+||+.+| ++||||| +||+..+..+.++|+++ ++.|.|||+|
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L---~~~G~TVIvV 547 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHL---RDLGNTLIVV 547 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHH---HhCCCEEEEE
Confidence 36888999754235999999999999999999999997 9999999 99999999999999998 4569999999
Q ss_pred ecCCCCChhhhhhhhhhhh
Q 016817 270 THGDMLSTEERLDARLKIC 288 (382)
Q Consensus 270 THd~~l~~~~~~~d~v~ll 288 (382)
+||++. +. .||+|++|
T Consensus 548 eH~~~~--i~-~aD~vi~L 563 (943)
T PRK00349 548 EHDEDT--IR-AADYIVDI 563 (943)
T ss_pred eCCHHH--HH-hCCEEEEe
Confidence 996665 65 58999988
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.28 E-value=1.1e-13 Score=149.80 Aligned_cols=126 Identities=11% Similarity=0.008 Sum_probs=88.3
Q ss_pred CCCCCCce-eeeeeecccCCCchhHHHHHHHhh-c-ccce-eeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 91 GGMDIPPV-ITILLMGFSGSGKSSLVNLMYSVL-S-RSGL-VLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 91 isl~i~~G-e~~alvGpnGsGKSTLl~~i~Gl~-~-~~G~-I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+|+++..+ ++++|+||||+|||||+|+|+|.. - ..|- |-.... ..++|..|.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~---------------------~~~~~~d~i~~- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH---------------------SEIPYFEEIFA- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc---------------------ccccchhheee-
Confidence 68888777 899999999999999999999983 2 3442 111000 02222222110
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCC
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDS 243 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~ 243 (382)
.++..+.+. ...+++|+|++|++.|++++ .+|.++|+|| ++||
T Consensus 372 --------------------------------~i~~~~si~-~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~ 417 (771)
T TIGR01069 372 --------------------------------DIGDEQSIE-QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDP 417 (771)
T ss_pred --------------------------------ecChHhHHh-hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCH
Confidence 001111223 55788999999999998876 7899999999 9999
Q ss_pred Ccchhh-hhhccCccccccCCCCeEEEecCCCC
Q 016817 244 KPLDAT-KRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 244 ~~~~~i-~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
.....+ ..++..+ .+.|.++|++||+.++
T Consensus 418 ~eg~ala~aiLe~l---~~~g~~viitTH~~eL 447 (771)
T TIGR01069 418 DEGSALAISILEYL---LKQNAQVLITTHYKEL 447 (771)
T ss_pred HHHHHHHHHHHHHH---HhcCCEEEEECChHHH
Confidence 999888 4667766 3468999999997655
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.28 E-value=1.1e-13 Score=125.53 Aligned_cols=71 Identities=11% Similarity=-0.084 Sum_probs=50.5
Q ss_pred cccccccccccccCCCccceeeecceeeeehh--HHHHHHHHh---cCCCCcchhhh-hhccCccccccCCCCeEEEecC
Q 016817 199 CALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN--IAEIYKALK---AGDSKPLDATK-RLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 199 ~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~--~P~iLLLDE---~LD~~~~~~i~-~~l~~l~~~~~~g~tiIiiTHd 272 (382)
.++..+.+. +..+++|+|++|. ++++.. +|+++|+|| ++|+.....+. .+++.+. ++.+.++|++||+
T Consensus 48 ~~~~~d~~~-~~~s~fs~~~~~l---~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~--~~~~~~iii~TH~ 121 (185)
T smart00534 48 RIGASDSLA-QGLSTFMVEMKET---ANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLL--EKIGALTLFATHY 121 (185)
T ss_pred EeCCCCchh-ccccHHHHHHHHH---HHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCCeEEEEecH
Confidence 344444444 6778999998874 444444 999999999 99999777764 5556652 2247899999996
Q ss_pred CCC
Q 016817 273 DML 275 (382)
Q Consensus 273 ~~l 275 (382)
+++
T Consensus 122 ~~l 124 (185)
T smart00534 122 HEL 124 (185)
T ss_pred HHH
Confidence 644
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=1e-12 Score=121.97 Aligned_cols=130 Identities=14% Similarity=0.038 Sum_probs=81.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHh--hcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl--~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
=+|+++.=..+.+++|+||||+|||||+|.|+.. +...|....... -.++|..|...
T Consensus 19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~---------------------~~~~~~d~i~~ 77 (213)
T cd03281 19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADS---------------------ATIGLVDKIFT 77 (213)
T ss_pred cceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCC---------------------cEEeeeeeeee
Confidence 4455554222378999999999999999999954 335666543211 14566555432
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
-+. ..+.+.. ++..+ .-+.||+++|++++.+|.++|+|| ++|
T Consensus 78 ~l~---~~~si~~----------------------~~S~f----------~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 78 RMS---SRESVSS----------------------GQSAF----------MIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred eeC---CccChhh----------------------ccchH----------HHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 111 1111100 00111 123589999999999999999999 999
Q ss_pred CCcchhh-hhhccCcccccc--CCCCeEEEecCCCC
Q 016817 243 SKPLDAT-KRLFSAPGLRKC--NENPILILTHGDML 275 (382)
Q Consensus 243 ~~~~~~i-~~~l~~l~~~~~--~g~tiIiiTHd~~l 275 (382)
+.....+ ...++.+. +. .+.++|++||+.++
T Consensus 123 ~~~~~~~~~ail~~l~--~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 123 TEDGAGLLIATIEHLL--KRGPECPRVIVSTHFHEL 156 (213)
T ss_pred HHHHHHHHHHHHHHHH--hcCCCCcEEEEEcChHHH
Confidence 9764444 56777763 21 23589999997666
No 422
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.20 E-value=3.5e-13 Score=133.26 Aligned_cols=197 Identities=15% Similarity=0.089 Sum_probs=123.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCC-CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDI-PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i-~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.--.++.+.+|.... ++---|-+ .+|++.++||-||-||||-+++++|-.+ .-|.-.- +.+ +.....
T Consensus 74 ~nl~~etthry~~n~-------fKlhrlp~prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~---w~~il~ 142 (592)
T KOG0063|consen 74 TNLEKETTHRYSANS-------FKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPD---WQEILT 142 (592)
T ss_pred hhHhhhhhhhhcccc-------eeeccCCCCCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCC-Ccc---hHHHhh
Confidence 334567778886554 22223333 4799999999999999999999999887 5554321 110 000000
Q ss_pred ehhhhhhhHhh-------------hccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccc
Q 016817 144 MYMEEHNVMRS-------------LQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 144 ~~~~~~~~~r~-------------~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
+. . -.++.. .+..||-|-|... ..+|.+.+. ...++....++++.+.|...+ ++.
T Consensus 143 ~f-r-gselq~yftk~le~~lk~~~kpQyvd~ipr~~-k~~v~~~l~--------~~~~r~~~~~~~~~~~L~~~~-~re 210 (592)
T KOG0063|consen 143 YF-R-GSELQNYFTKILEDNLKAIIKPQYVDQIPRAV-KGTVGSLLD--------RKDERDNKEEVCDQLDLNNLL-DRE 210 (592)
T ss_pred hh-h-hHHHhhhhhhhccccccCcCChHHHHHHHHHH-HHHHHHHHH--------HHhhcccHHHHHHHHHHhhHH-Hhh
Confidence 00 0 000000 0000111100000 011222221 111222344566777777554 489
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
..+||||+-||.+||.+-+++.++.++|| .||...+..--..|+.+. .-+.-||+|.||+.+ .....|-+.+
T Consensus 211 ~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~---~p~~YiIVVEHDLsV--LDylSDFiCc 285 (592)
T KOG0063|consen 211 VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLI---NPDRYIIVVEHDLSV--LDYLSDFICC 285 (592)
T ss_pred hhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhh---CCCCeEEEEEeechH--HHhhhcceeE
Confidence 99999999999999999999999999999 899999999999999883 356789999997776 6666676666
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
+-+
T Consensus 286 LYG 288 (592)
T KOG0063|consen 286 LYG 288 (592)
T ss_pred Eec
Confidence 544
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.14 E-value=6.3e-14 Score=129.89 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=46.5
Q ss_pred cCCCccceeeecceeeeeh----hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 211 LKSSPKYVLRRVDFAMVVS----NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~----~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+..||||||-+++||--|+ .++++++||| +||..++..+.++|+++. .+.-+|++||+..+
T Consensus 134 ~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~----~~~Q~ii~Th~~~~ 201 (220)
T PF02463_consen 134 PEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS----KQSQFIITTHNPEM 201 (220)
T ss_dssp TTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT----TTSEEEEE-S-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccc
Confidence 4589999999999986654 4678999999 999999999999999972 35789999996554
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.14 E-value=1.4e-12 Score=141.59 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=92.8
Q ss_pred CCCCC-ceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccc-eeeEeCCCCCh
Q 016817 92 GMDIP-PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG-FCVYDSRGFNY 169 (382)
Q Consensus 92 sl~i~-~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig-~v~Q~~~l~~~ 169 (382)
|+.+. .+.++.|.|||++||||+||.++...- -. ++| +||-+.. ..
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~-----------------------------ma-q~G~~vpa~~~--~~ 367 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL-----------------------------MA-KSGLPIPANEP--SE 367 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHH-----------------------------HH-HhCCCcccCCC--cc
Confidence 44443 456899999999999999999975421 00 223 3343310 01
Q ss_pred hhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcc
Q 016817 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPL 246 (382)
Q Consensus 170 ~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~ 246 (382)
.++.+++ +..+|-.+.+. +.++++|+||+|++.|++++ .+|.++|+|| ++||...
T Consensus 368 i~~~~~i--------------------~~~ig~~~si~-~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg 425 (782)
T PRK00409 368 IPVFKEI--------------------FADIGDEQSIE-QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEG 425 (782)
T ss_pred ccccceE--------------------EEecCCccchh-hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHH
Confidence 1111111 11222233444 67889999999999999988 7899999999 9999988
Q ss_pred hhhhh-hccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 247 DATKR-LFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 247 ~~i~~-~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
..+.. ++..+ .+.|.++|++||+.++ ...+++...+.+
T Consensus 426 ~ala~aile~l---~~~~~~vIitTH~~el--~~~~~~~~~v~~ 464 (782)
T PRK00409 426 AALAISILEYL---RKRGAKIIATTHYKEL--KALMYNREGVEN 464 (782)
T ss_pred HHHHHHHHHHH---HHCCCEEEEECChHHH--HHHHhcCCCeEE
Confidence 88854 55655 3468899999997666 555566555544
No 425
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.12 E-value=1.1e-11 Score=125.73 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=52.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-eeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+|++|||++++||+++|+|||||||||||+ +|+.. ++| +|.++|+++...+ ..+...+| +|||++
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~------~~ai~~LR-----~VFQ~f 87 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPN------KNAMETLD-----EIFDGF 87 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCC------HHHHHHHH-----HHHHhh
Confidence 699999999999999999999999999999 67766 666 7999999875432 12333333 788875
No 426
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.06 E-value=4.1e-11 Score=113.73 Aligned_cols=174 Identities=16% Similarity=0.076 Sum_probs=92.0
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc--eeeeEeecCCCcccceeehhhhhhhHhhhccc-eeeEeCCCCC
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG-FCVYDSRGFN 168 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G--~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig-~v~Q~~~l~~ 168 (382)
+.+.+|+.++|+||+|+|||||++.|++... ..+ .+++... .+.. .+..++.+.-.. ++.......+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI--~er~-------~ev~el~~~I~~~~v~~~~~~~~ 81 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLI--DERP-------EEVTDMQRSVKGEVIASTFDEPP 81 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEc--cCCC-------ccHHHHHHHhccEEEEecCCCCH
Confidence 5788999999999999999999999999887 433 3232211 1100 011111111111 2222222111
Q ss_pred hhh--hhhhHHHHHhhh-hcCccc----c--ccccccCccccccccccccccCCCccce--------eeecceeeeehhH
Q 016817 169 YNR--VHEGLEELSSWM-SEGVHH----N--QRCLRSDDCALMKNDAEIDDLKSSPKYV--------LRRVDFAMVVSNI 231 (382)
Q Consensus 169 ~~t--v~eni~~~~~~~-~~~~~~----~--~~~~~~l~~~~L~~~~~~~~~~~LSGGq--------kQRvaIAraL~~~ 231 (382)
... +...+...+..+ ..+... + .+..++.+.+.. ..-..+|||+ +||+++||++..+
T Consensus 82 ~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~------~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~ 155 (249)
T cd01128 82 ERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVP------PSGKILSGGVDANALHKPKRFFGAARNIEEG 155 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccc------cCCCCCCCCcChhhhhhhHHHHHHhcCCCCC
Confidence 111 111111111111 111110 0 111112222222 1223369999 9999999999899
Q ss_pred HHHHHHHh--cCCCCcchh-hhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 232 AEIYKALK--AGDSKPLDA-TKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 232 P~iLLLDE--~LD~~~~~~-i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
++|.+| - .+|+.+... ++ +.++ +..+.|.|++|| ++++.. ..+.|.+++.
T Consensus 156 gsIt~l-~T~~~d~~~~~~~~i--~~~~---~~~~~~~ivls~--~la~~~-~~paI~vl~s 208 (249)
T cd01128 156 GSLTII-ATALVDTGSRMDDVI--FEEF---KGTGNMELVLDR--RLAERR-IFPAIDILKS 208 (249)
T ss_pred CceEEe-eeheecCCCcccchH--HHHH---hcCCCcEEEEch--HHhhCC-CCCeEEEcCC
Confidence 999988 5 787655433 33 3443 224689999999 664344 3455555554
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.00 E-value=1.5e-11 Score=114.77 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=38.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh-c-ccceeee
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL-S-RSGLVLF 130 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~-~-~~G~I~i 130 (382)
+.+|++|.+.+|++++|+||||+||||++++|++.. . ..|....
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 589999999999999999999999999999999954 3 6787654
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.96 E-value=1.3e-11 Score=113.85 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=40.2
Q ss_pred CCCccc--eeeecceeeeehhHHHHHHHHh--------cCCCCcchhhhhhccCc
Q 016817 212 KSSPKY--VLRRVDFAMVVSNIAEIYKALK--------AGDSKPLDATKRLFSAP 256 (382)
Q Consensus 212 ~~LSGG--qkQRvaIAraL~~~P~iLLLDE--------~LD~~~~~~i~~~l~~l 256 (382)
+..||+ |++++.|||+++.+|+++++|| +||+..+..+.+.|+++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 445555 8888999999999999999998 59999999999999998
No 429
>PRK13695 putative NTPase; Provisional
Probab=98.93 E-value=4.3e-11 Score=107.19 Aligned_cols=75 Identities=8% Similarity=-0.063 Sum_probs=57.6
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh--cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
++...|||+++-++.+++....+|+++++|| .++... ..+.+.+.++ .+.|.++|+++|+.. +..+++++.
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~-~~~~~~l~~~---~~~~~~~i~v~h~~~---~~~~~~~i~ 146 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS-PKFVKAVEEV---LDSEKPVIATLHRRS---VHPFVQEIK 146 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh-HHHHHHHHHH---HhCCCeEEEEECchh---hHHHHHHHh
Confidence 4556799999999999998889999999999 454443 4556667666 236899999999632 456788888
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
.+.+
T Consensus 147 ~~~~ 150 (174)
T PRK13695 147 SRPG 150 (174)
T ss_pred ccCC
Confidence 8876
No 430
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.89 E-value=1.7e-10 Score=119.57 Aligned_cols=169 Identities=15% Similarity=0.006 Sum_probs=104.4
Q ss_pred cccC-CCCCCceeeeeeecccCCCchhHHHHH--HHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 88 IQKG-GMDIPPVITILLMGFSGSGKSSLVNLM--YSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 88 L~~i-sl~i~~Ge~~alvGpnGsGKSTLl~~i--~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
|+.+ .=-+++|.++.|.||+|||||||..-+ .|+.. .+.-+++....- ..+..... ..+||-+++
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~----------~~~l~~~~-~~~G~~~~~ 78 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES----------PQDIIKNA-RSFGWDLQK 78 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC----------HHHHHHHH-HHcCCCHHH
Confidence 4444 225889999999999999999999876 46655 456666665421 12222122 256776654
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee--ehhHHHHHHHHhcC
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV--VSNIAEIYKALKAG 241 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra--L~~~P~iLLLDE~L 241 (382)
..--..+.+. .. ........+++.+++.+.+. +.+..+|+|++|||.|+++ |...|+.+
T Consensus 79 ~~~~g~l~~~-----------~~-~~~~~~~~~~~~~~l~~~l~-~i~~~ls~g~~qRVvIDSl~aL~~~~~~~------ 139 (484)
T TIGR02655 79 LVDEGKLFIL-----------DA-SPDPEGQDVVGGFDLSALIE-RINYAIRKYKAKRVSIDSVTAVFQQYDAV------ 139 (484)
T ss_pred HhhcCceEEE-----------ec-CchhccccccccCCHHHHHH-HHHHHHHHhCCcEEEEeehhHhhhhcCch------
Confidence 3110000000 00 00111223456677776554 8889999999999999954 43444332
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCCh-------hhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLST-------EERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~-------~~~~~d~v~ll~~ 290 (382)
+..+..+.++++.+ ++.|+|+|++||+.+... ...++|-|+.++.
T Consensus 140 -~~~r~~l~~Li~~L---~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~~ 191 (484)
T TIGR02655 140 -SVVRREIFRLVARL---KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 191 (484)
T ss_pred -HHHHHHHHHHHHHH---HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEEE
Confidence 34567788888887 457999999999765310 2457888888875
No 431
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.89 E-value=3.5e-10 Score=115.27 Aligned_cols=169 Identities=11% Similarity=0.054 Sum_probs=97.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+++++ |.+.+|++++|+|+||+|||||+++|+|+.+ +.|.|.+.|+.-.+...... .......++ +.+.++.+...
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~-~~l~~~~l~-r~v~vv~~~~~ 224 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIE-RDLGPEGLK-RSIVVVATSDQ 224 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHH-hhcChhhhc-CeEEEEECCCC
Confidence 69999 9999999999999999999999999999999 89999998875432221000 000111233 37888875321
Q ss_pred CC-ChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHH-HHHHh----
Q 016817 166 GF-NYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEI-YKALK---- 239 (382)
Q Consensus 166 l~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~i-LLLDE---- 239 (382)
-. .+..+-..-..++.++.. .. ++++= +-+.+. ++ |+|+ -+| +.+.|
T Consensus 225 ~~~~r~~~~~~a~~iAEyfr~-~g-----~~Vll---~~Dslt-r~--------------A~A~---rEisl~~ge~P~~ 277 (438)
T PRK07721 225 PALMRIKGAYTATAIAEYFRD-QG-----LNVML---MMDSVT-RV--------------AMAQ---REIGLAVGEPPTT 277 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-CC-----CcEEE---EEeChH-HH--------------HHHH---HHHHHhcCCCCcc
Confidence 00 000000000001111110 00 00000 001111 11 2221 122 34566
Q ss_pred -cCCCCcchhhhhhccCccccccCCC-----CeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNEN-----PILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~-----tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+||.....+.++++++. ..+.|. ||++.+||++ ..+||++..+.+
T Consensus 278 ~G~dp~~~~~l~~ller~~-~~~~GsIT~~~TVlv~~hdm~----e~i~d~v~~i~d 329 (438)
T PRK07721 278 KGYTPSVFAILPKLLERTG-TNASGSITAFYTVLVDGDDMN----EPIADTVRGILD 329 (438)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCCCCeeeEEEEEEECCCCC----chhhhhEEEecC
Confidence 999999999999999973 113575 9999999665 267888877765
No 432
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=1.9e-10 Score=107.15 Aligned_cols=135 Identities=13% Similarity=0.025 Sum_probs=80.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+-+|++|++++|++++|.||||+||||+++.+++..- ..|--.-... -.++++.+
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~---------------------~~i~~~~~-- 75 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS---------------------MRLSLVDR-- 75 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc---------------------cEeccccE--
Confidence 5899999999999999999999999999999998754 2332111000 02222111
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+|..+...+++......+ + .|-++++-.-..+.+|.++|+|| |.
T Consensus 76 -i~~~~~~~d~~~~~~StF-------------------------------~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 76 -IFTRIGARDDIMKGESTF-------------------------------M-VELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred -EEEecCcccccccCcchH-------------------------------H-HHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 122222222221110000 0 01111111111124689999999 89
Q ss_pred CCCcchhhhhh-ccCccccccCCCCeEEEecCCCCChhhhh
Q 016817 242 DSKPLDATKRL-FSAPGLRKCNENPILILTHGDMLSTEERL 281 (382)
Q Consensus 242 D~~~~~~i~~~-l~~l~~~~~~g~tiIiiTHd~~l~~~~~~ 281 (382)
++.....+... ++.+. +..+.++|++||++++ +..+
T Consensus 123 ~~~dg~~la~ail~~L~--~~~~~~~i~~TH~~el--~~~~ 159 (218)
T cd03286 123 STHDGYAIAHAVLEYLV--KKVKCLTLFSTHYHSL--CDEF 159 (218)
T ss_pred CchHHHHHHHHHHHHHH--HhcCCcEEEEeccHHH--HHHh
Confidence 99998888877 66662 2238999999997777 5544
No 433
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=1.3e-10 Score=130.76 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=71.0
Q ss_pred ccccCCCccceeeecceeeeehh----------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSN----------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~----------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
++++.+|||||++||+||+||+. +|++||+|| +||+.+...+++.|.++ ...|++|+||||+++
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l---~~~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI---REGSKMIGIISHVPE 1021 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCcHH
Confidence 37899999999999999999986 799999999 99999999999999998 346899999999777
Q ss_pred CChhhhhhhhhhhhhh
Q 016817 275 LSTEERLDARLKICEY 290 (382)
Q Consensus 275 l~~~~~~~d~v~ll~~ 290 (382)
+ ...++++|.+++.
T Consensus 1022 ~--~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618 1022 F--RERIPHRILVKKT 1035 (1042)
T ss_pred H--HHhhCCEEEEEEC
Confidence 7 8889999998864
No 434
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.76 E-value=4.2e-10 Score=118.35 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=63.1
Q ss_pred cccCCCccceeeecceeeeeh----------hHHHHHHHHh----cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 209 DDLKSSPKYVLRRVDFAMVVS----------NIAEIYKALK----AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~----------~~P~iLLLDE----~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
..+.+|||||+||++||+||+ .+|++||||| +||+.+...+.+.|.++ .|.|||+|||++.
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-----~~~~iiiish~~~ 538 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-----KDTNVFVISHKDH 538 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-----CCCeEEEEECchh
Confidence 467889999999999999987 4899999999 59999999999999987 4789999999755
Q ss_pred CChhhhhhhhhhhhhh
Q 016817 275 LSTEERLDARLKICEY 290 (382)
Q Consensus 275 l~~~~~~~d~v~ll~~ 290 (382)
+ . ..+|+++++..
T Consensus 539 ~--~-~~~d~~~~l~~ 551 (562)
T PHA02562 539 D--P-QKFDRHLKMEK 551 (562)
T ss_pred c--h-hhhhcEEEEEE
Confidence 5 4 35677777754
No 435
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.76 E-value=3e-09 Score=108.15 Aligned_cols=93 Identities=11% Similarity=-0.009 Sum_probs=69.3
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+.+.++.+++++.|..+.+ +++.++ .|.+|++++|+||||||||||+++|+++.+ +.|.|.+.|+.-.+..
T Consensus 136 ~p~~~~r~~v~~~l~TGi~-----aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~-- 207 (450)
T PRK06002 136 APPAMTRARVETGLRTGVR-----VIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVR-- 207 (450)
T ss_pred CCCCeEeecceEEcCCCcE-----Eeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHH--
Confidence 3457888999999976632 588885 999999999999999999999999999988 7898888654222111
Q ss_pred eeehhhhhhhHhhhccceeeEeC
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
.+....+...|++.++|++|..
T Consensus 208 -e~~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 208 -EFLEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred -HHhHHHHHHhhCCeEEEEEcCC
Confidence 1122233334555899999964
No 436
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.75 E-value=8.9e-11 Score=107.39 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=50.8
Q ss_pred cccCCCccceeeecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
..+..+|.|++|.+.|+.+|...+ .++++|| +|+|..+..+.+.|.++. +.+.-+|++||++.+
T Consensus 232 ~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~---~~~~QviitTHSp~i 301 (303)
T PF13304_consen 232 IPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELS---KKNIQVIITTHSPFI 301 (303)
T ss_dssp GGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTG---GGSSEEEEEES-GGG
T ss_pred EeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhC---ccCCEEEEeCccchh
Confidence 456678999999998888887766 7899999 999999999999998873 247899999997654
No 437
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.74 E-value=4.3e-09 Score=106.88 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=66.1
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc---ceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~---G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+++++ |++.+|++++|+||||||||||+++|+|+.+ +. |.|-.+|.++.+.... ...+....| ..+++++|
T Consensus 145 aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~---~l~~~gl~r-svvv~~~~ 219 (434)
T PRK07196 145 AINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEH---SLQAAGMAK-SVVVAAPA 219 (434)
T ss_pred eccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHH---Hhhhcccce-EEEEEecC
Confidence 79999 9999999999999999999999999999987 54 3333333333211100 001111123 36899999
Q ss_pred eCCCCChhhhhhhHHHHHhhhh
Q 016817 163 DSRGFNYNRVHEGLEELSSWMS 184 (382)
Q Consensus 163 ~~~l~~~~tv~eni~~~~~~~~ 184 (382)
+...+..+++.++...++..+.
T Consensus 220 d~s~~~rl~a~e~a~~iAEyfr 241 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYYR 241 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHhh
Confidence 9888888999999887775553
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.73 E-value=2.9e-09 Score=109.48 Aligned_cols=161 Identities=16% Similarity=0.073 Sum_probs=91.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
++++.++.+++|.+++++||||+||||++..|++.+. ..|.. +|+++.+|+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~---------------------------kV~LI~~Dt- 296 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS---------------------------KVALLTTDS- 296 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC---------------------------eEEEEeCCc-
Confidence 4677788888999999999999999999999999876 55531 456677775
Q ss_pred CCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeecc---eeeeehhHH-----HHHH
Q 016817 166 GFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD---FAMVVSNIA-----EIYK 236 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva---IAraL~~~P-----~iLL 236 (382)
...++.|++..++..++... .............++.+. ....+.+. |..||.. -+.+++.++ .+|+
T Consensus 297 --~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~-d~VLIDTa--Gr~~~d~~~~e~~~~l~~~~~p~e~~LV 371 (484)
T PRK06995 297 --YRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK-HIVLIDTI--GMSQRDRMVSEQIAMLHGAGAPVKRLLL 371 (484)
T ss_pred --cchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC-CeEEeCCC--CcChhhHHHHHHHHHHhccCCCCeeEEE
Confidence 23667778876554443111 111222223344555543 23566664 4333331 112222222 3444
Q ss_pred HHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 237 ALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 237 LDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
||... ....+.+.++.+ +..+.+-+|.|+ +++..+....+-+..
T Consensus 372 LdAt~---~~~~l~~i~~~f---~~~~~~g~IlTK---lDet~~~G~~l~i~~ 415 (484)
T PRK06995 372 LNATS---HGDTLNEVVQAY---RGPGLAGCILTK---LDEAASLGGALDVVI 415 (484)
T ss_pred EeCCC---cHHHHHHHHHHh---ccCCCCEEEEeC---CCCcccchHHHHHHH
Confidence 44411 224455555554 335678888998 444555555444443
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.68 E-value=7.3e-10 Score=99.45 Aligned_cols=80 Identities=14% Similarity=-0.145 Sum_probs=59.7
Q ss_pred ccccCCCccceee------ecceeeeehhHHHHHHHHh---cCC---CCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 208 IDDLKSSPKYVLR------RVDFAMVVSNIAEIYKALK---AGD---SKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 208 ~~~~~~LSGGqkQ------RvaIAraL~~~P~iLLLDE---~LD---~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+..+..+|+|++| ....+.+...+|+++++|| .+| ...+..+.++++.+ ++.|.|+|+++|+...
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l---~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL---KRFGVTTLLTSEQSGL 142 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH---HHCCCEEEEEeccccC
Confidence 3778899999998 4444445567899999999 677 66667777888877 4468999999996554
Q ss_pred C-------hhhhhhhhhhhhhh
Q 016817 276 S-------TEERLDARLKICEY 290 (382)
Q Consensus 276 ~-------~~~~~~d~v~ll~~ 290 (382)
. .+..++|.++.++.
T Consensus 143 ~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 143 EGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred CCcccCcCceeEeeeEEEEEEE
Confidence 2 14567788887765
No 440
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.68 E-value=3.5e-10 Score=119.28 Aligned_cols=72 Identities=15% Similarity=0.041 Sum_probs=63.6
Q ss_pred CCCccceeeecceeeeehhH----HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNI----AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~----P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
..|||||+|||+||++++.. |++||+|| +||+.+...+.+.|+++. .+.|||+|||++.+ +. +||+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~----~~~~vi~iTH~~~~--~~-~ad~ 511 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS----ERHQVLCVTHLPQV--AA-HADA 511 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEEChHHH--HH-hcCe
Confidence 36999999999999999986 58999999 999999999999999983 47999999997665 54 7899
Q ss_pred hhhhhh
Q 016817 285 LKICEY 290 (382)
Q Consensus 285 v~ll~~ 290 (382)
++++++
T Consensus 512 ~~~l~k 517 (563)
T TIGR00634 512 HFKVEK 517 (563)
T ss_pred EEEEEE
Confidence 888876
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=3.4e-09 Score=107.59 Aligned_cols=144 Identities=12% Similarity=0.049 Sum_probs=99.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
+.++-+.++..|..+-+ +++++ |.+.+|+.++|+|+||+|||||+++|+|..+ +.|.|.+.|+.-
T Consensus 129 ~~~~r~~i~~~l~TGir-----aID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------- 194 (432)
T PRK06793 129 HAFEREEITDVFETGIK-----SIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------- 194 (432)
T ss_pred CchheechhhccCCCCE-----EEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------
Confidence 35677778877865532 57774 9999999999999999999999999999988 777776665411
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.++.+.+... ++ .+ ++.. .+- ......|.|+|+|+
T Consensus 195 --------------------------~ev~e~~~~~---l~~~g----------l~~t----vvv-~~tsd~s~~~r~ra 230 (432)
T PRK06793 195 --------------------------REVKDFIRKE---LGEEG----------MRKS----VVV-VATSDESHLMQLRA 230 (432)
T ss_pred --------------------------ccHHHHHHHH---hhhcc----------ccee----EEE-EECCCCCHHHHHHH
Confidence 1222222111 00 00 0000 001 34567799999999
Q ss_pred ceeeeeh-------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEec
Q 016817 223 DFAMVVS-------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTH 271 (382)
Q Consensus 223 aIAraL~-------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTH 271 (382)
+.+.+.+ .++-+|++|+ ..|+. +++-..+.+. ...|.+..+.||
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~---p~~G~~~~~~s~ 284 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKEL---PIGGKTLLMESY 284 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCC---CCCCeeeeeecc
Confidence 9987766 5788999999 66664 6676677777 224788888888
No 442
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.62 E-value=3.5e-09 Score=99.44 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=31.2
Q ss_pred CCCceeeeeeecccCCCchhH-HHHHHHhhc-ccceeeeE
Q 016817 94 DIPPVITILLMGFSGSGKSSL-VNLMYSVLS-RSGLVLFA 131 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTL-l~~i~Gl~~-~~G~I~i~ 131 (382)
.+++|+++.|+|||||||||| +++++++.+ ....+++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 578999999999999999999 699998876 44445554
No 443
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.61 E-value=2.5e-08 Score=90.44 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=40.1
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
.+-+.+.+++|+.++|+||||||||||+++|+|+++ +.|.|.+.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 444567788999999999999999999999999999 7899988654
No 444
>PRK10869 recombination and repair protein; Provisional
Probab=98.61 E-value=7.4e-10 Score=116.44 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=61.7
Q ss_pred CCccceeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
.|||||+|||+||++++. +|+++|+|| +||+.+...+.+.|+++. .+.+||+|||++.+ + .+||+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~----~~~qvi~iTH~~~~--~-~~ad~~ 502 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG----ESTQVMCVTHLPQV--A-GCGHQH 502 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHH--H-HhCCEE
Confidence 389999999999999997 589999999 999999999999999983 36899999997765 5 577777
Q ss_pred hhhhh
Q 016817 286 KICEY 290 (382)
Q Consensus 286 ~ll~~ 290 (382)
+.+.+
T Consensus 503 ~~v~k 507 (553)
T PRK10869 503 FFVSK 507 (553)
T ss_pred EEEec
Confidence 77765
No 445
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.60 E-value=1.1e-09 Score=123.11 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=65.7
Q ss_pred ccccCCCccceeeecceeeeehh--------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCC
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSN--------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLS 276 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~--------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~ 276 (382)
++++.+|||||+|+++||+||+. +|++|++|| +||+.+...+++.|..+ ++.|+||+||||...+
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l---~~~g~~v~iisH~~~l- 1019 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDAL---NASGKTIGVISHVEAM- 1019 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH---HHCCCEEEEEecHHHH-
Confidence 38899999999999999999996 899999999 99999999999999998 4469999999995444
Q ss_pred hhhhhhhhhhhhh
Q 016817 277 TEERLDARLKICE 289 (382)
Q Consensus 277 ~~~~~~d~v~ll~ 289 (382)
..++..+|.|-.
T Consensus 1020 -~~~i~~qi~V~k 1031 (1047)
T PRK10246 1020 -KERIPVQIKVKK 1031 (1047)
T ss_pred -HHhccceEEEEE
Confidence 555555555554
No 446
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.59 E-value=3e-09 Score=92.09 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=28.6
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
++.|.||||+||||+++.+++... ..|.+.+.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 478999999999999999999887 6677766554
No 447
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.53 E-value=7.1e-08 Score=86.93 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=47.0
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
+|++++|+||||||||||+++|+|++.. +.++|.++... .. .|....|+.+|+...+++.++..++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~~~--------~~---~r~~~~g~~~~~~~~~~~~~~~~~~ 67 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLHPA--------KN---IDKMSQGIPLTDEDRLPWLERLNDA 67 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccCCH--------hH---HHHHhcCCCCCcccchHHHHHHHHH
Confidence 5999999999999999999999998763 46777654211 11 2222456777775556666766666
Q ss_pred HH
Q 016817 177 EE 178 (382)
Q Consensus 177 ~~ 178 (382)
.+
T Consensus 68 ~~ 69 (176)
T PRK09825 68 SY 69 (176)
T ss_pred HH
Confidence 43
No 448
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.53 E-value=3.5e-08 Score=90.47 Aligned_cols=56 Identities=7% Similarity=0.044 Sum_probs=37.6
Q ss_pred ceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
+++++|.++|+++++||--|++. +...++.. ..|.+++.++|..+. + ...+|++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEird~e~---~~~~l~~a----~~G~~v~~t~Ha~~~--~-~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMRDLET---IRLALTAA----ETGHLVMSTLHTNSA--A-KTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCCCHHH---HHHHHHHH----HcCCEEEEEecCCcH--H-HHHhHHHhh
Confidence 37888999999999999445443 33333322 368899999995544 4 455666554
No 449
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.53 E-value=2.9e-08 Score=101.12 Aligned_cols=123 Identities=11% Similarity=0.003 Sum_probs=71.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhcccee----
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFC---- 160 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v---- 160 (382)
+++++ |.+.+|+.++|+|+||+|||||+++|+|+.+ +.|.|.+.|+.-.+.. ......... +..+.+++
T Consensus 154 aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~---~~~~~~l~~-~g~~~svvvvat 228 (442)
T PRK06315 154 CIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVR---EFIEGDLGE-EGMKRSVIVVST 228 (442)
T ss_pred EEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHH---HHHHHHHHh-cCCceEEEEEeC
Confidence 68888 9999999999999999999999999999985 4577777563211110 111111111 11234555
Q ss_pred -eEeCC--CCChhhhhhhHHHHHhhhhcC----ccccccccccCcccccc----ccccccccCCCc
Q 016817 161 -VYDSR--GFNYNRVHEGLEELSSWMSEG----VHHNQRCLRSDDCALMK----NDAEIDDLKSSP 215 (382)
Q Consensus 161 -~Q~~~--l~~~~tv~eni~~~~~~~~~~----~~~~~~~~~~l~~~~L~----~~~~~~~~~~LS 215 (382)
+|++. +.+.+ +...+.+.....+.. .....+..++++.+++. +.....+|+.||
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 77752 33333 344443322112111 12235566778888883 222336777665
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.53 E-value=2.7e-08 Score=89.48 Aligned_cols=63 Identities=16% Similarity=0.034 Sum_probs=47.1
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+..+..|.||-=---+.+.+.. --|++||| +|-|.-+..++..|+++ .+.|.-+||+||.+-+
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~l---a~sGaQ~IiATHSPiL 190 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDL---ADSGAQIIIATHSPIL 190 (233)
T ss_pred cchhhhccchHHHHHHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHH---HhcCCeEEEEecChhh
Confidence 4456678888544334444333 45899999 99999999999999999 4578999999995543
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=98.51 E-value=2.5e-09 Score=118.23 Aligned_cols=76 Identities=8% Similarity=-0.004 Sum_probs=64.3
Q ss_pred cccCCCccceee------ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhh
Q 016817 209 DDLKSSPKYVLR------RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEE 279 (382)
Q Consensus 209 ~~~~~LSGGqkQ------RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~ 279 (382)
+++..|||||+| |++||++++.+|+++|+|| +||+..+..+.++|..+ ...+.|||+||||+.+ .
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~---~~~~~~iiiith~~~~---~ 857 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERY---LRKIPQVIIVSHDEEL---K 857 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHH---HhcCCEEEEEECCHHH---H
Confidence 788999999999 5566678889999999999 99999999999999887 2346799999997654 4
Q ss_pred hhhhhhhhhhh
Q 016817 280 RLDARLKICEY 290 (382)
Q Consensus 280 ~~~d~v~ll~~ 290 (382)
.+||++++|..
T Consensus 858 ~~~d~~~~l~~ 868 (880)
T PRK03918 858 DAADYVIRVSL 868 (880)
T ss_pred HhCCeEEEEEe
Confidence 67888888864
No 452
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.50 E-value=2.1e-08 Score=100.53 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=64.2
Q ss_pred CccccchhHHHHHHhhhhhh---cCcCchhHHHHHhhhcccCCeeeecCCcc-----------cCCCCCCceeeeeeecc
Q 016817 41 NVSTLTPRLRVLREMERLAL---IAPDGLNELRHKFLSYRSGDFWIPIGGIQ-----------KGGMDIPPVITILLMGF 106 (382)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~nvs~~y~~~~~~v~~~vL~-----------~isl~i~~Ge~~alvGp 106 (382)
....+.+|+.++++.++... ......++|+||++.|++.. . +|+ |+++.|.+|+.++|+||
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er-~----~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNER-L----RLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred eccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCcc-c----eeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 34566799999999887521 22345799999999998654 2 486 99999999999999999
Q ss_pred cCCCchhHHHHHHHhhc
Q 016817 107 SGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 107 nGsGKSTLl~~i~Gl~~ 123 (382)
+|||||||++.|+..+.
T Consensus 177 ~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCChhHHHHHHHHhhc
Confidence 99999999999999876
No 453
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.48 E-value=5.6e-08 Score=95.17 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=36.3
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeE
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA 131 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~ 131 (382)
+++.+..|+.++|+||+|||||||+++|+++++ ..|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 467788999999999999999999999999998 67777664
No 454
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.43 E-value=1.7e-07 Score=86.26 Aligned_cols=70 Identities=21% Similarity=0.231 Sum_probs=44.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcc--cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSR--SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~--~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
++|++++|+||||||||||++.|+++++. .+.+..|+.-.. ..... .+ ...++.+|++..|+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~---------~~~~~-~~-~~~~~~~~~~~~~~~~~l~ 72 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKD---------QSHLE-MA-ERKKTNFDHPDAFDNDLLY 72 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccC---------hhhCC-HH-HhcCCCCCCccHhHHHHHH
Confidence 67999999999999999999999999873 344443332100 00110 12 2567888877666644444
Q ss_pred hhH
Q 016817 174 EGL 176 (382)
Q Consensus 174 eni 176 (382)
+.+
T Consensus 73 ~~l 75 (207)
T TIGR00235 73 EHL 75 (207)
T ss_pred HHH
Confidence 444
No 455
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.43 E-value=1.2e-08 Score=115.26 Aligned_cols=75 Identities=11% Similarity=0.055 Sum_probs=63.4
Q ss_pred ccccCCCccceeeecceeeeeh----hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVS----NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~----~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~ 280 (382)
+.++..|||||+||++||++++ .+|+++|||| +||+.+...+.++|..+. .+.++|||||++.+ + .
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~----~~~~~i~~sh~~~~--~-~ 1156 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFS----KNTQFIVITHNKGT--M-E 1156 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhc----cCCEEEEEEcChhH--H-H
Confidence 4788999999999999999985 5679999999 999999999999999973 34789999997665 5 4
Q ss_pred hhhhhhhhh
Q 016817 281 LDARLKICE 289 (382)
Q Consensus 281 ~~d~v~ll~ 289 (382)
+||+++.+.
T Consensus 1157 ~~d~~~~~~ 1165 (1179)
T TIGR02168 1157 VADQLYGVT 1165 (1179)
T ss_pred HhhhHeeee
Confidence 578776543
No 456
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.40 E-value=5.2e-07 Score=88.75 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=55.3
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhh-HhhhccceeeEeCCCCChhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNV-MRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~-~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
++|++++++|||||||||++..|++.+. ..|+|.+.+.|...... ..+... ..+..+++++|.....+..++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a-----~eql~~~a~~~~i~~~~~~~~~dpa~~v~ 186 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAA-----IEQLQVWGERVGVPVIAQKEGADPASVAF 186 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhh-----HHHHHHHHHHcCceEEEeCCCCCHHHHHH
Confidence 5789999999999999999999999998 67899998877532211 111111 1123688999876656656666
Q ss_pred hhHH
Q 016817 174 EGLE 177 (382)
Q Consensus 174 eni~ 177 (382)
+++.
T Consensus 187 ~~l~ 190 (318)
T PRK10416 187 DAIQ 190 (318)
T ss_pred HHHH
Confidence 7664
No 457
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=1.9e-08 Score=115.71 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=61.0
Q ss_pred cccCCCccceee------ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCcccc--ccCCCCeEEEecCCCCCh
Q 016817 209 DDLKSSPKYVLR------RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLR--KCNENPILILTHGDMLST 277 (382)
Q Consensus 209 ~~~~~LSGGqkQ------RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~--~~~g~tiIiiTHd~~l~~ 277 (382)
..++.|||||+| |++||||++.+|++|+||| +||+.+...+.+.|..+... ...|.|||+||||+..
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-- 1272 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-- 1272 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH--
Confidence 355789999999 9999999999999999999 99999999998888776210 1247899999997766
Q ss_pred hhhhhh
Q 016817 278 EERLDA 283 (382)
Q Consensus 278 ~~~~~d 283 (382)
+..+|.
T Consensus 1273 ~~~~~~ 1278 (1311)
T TIGR00606 1273 VELLGR 1278 (1311)
T ss_pred HHHHhh
Confidence 777664
No 458
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.35 E-value=5e-08 Score=107.17 Aligned_cols=64 Identities=3% Similarity=-0.033 Sum_probs=52.3
Q ss_pred cccCCCccceeeecceeeee----------------------hhHHHHHHHHh---cC-CCCcchhhhhhccCccccccC
Q 016817 209 DDLKSSPKYVLRRVDFAMVV----------------------SNIAEIYKALK---AG-DSKPLDATKRLFSAPGLRKCN 262 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL----------------------~~~P~iLLLDE---~L-D~~~~~~i~~~l~~l~~~~~~ 262 (382)
.....||+|+.|.+.|...+ ..+|+++++|| +| |+.....+.+.++.+ ++.
T Consensus 608 ~~~d~l~~~~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~---RK~ 684 (818)
T PRK13830 608 AEEDGLALGAFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVL---RKA 684 (818)
T ss_pred CCccccCccceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHH---HHc
Confidence 55677999988888776554 35789999999 89 689999999999997 557
Q ss_pred CCCeEEEecCCCC
Q 016817 263 ENPILILTHGDML 275 (382)
Q Consensus 263 g~tiIiiTHd~~l 275 (382)
|.+++++||++..
T Consensus 685 ~~~vil~Tq~~~d 697 (818)
T PRK13830 685 NCAVVLATQSISD 697 (818)
T ss_pred CCEEEEEeCCHHH
Confidence 8999999995544
No 459
>PRK01156 chromosome segregation protein; Provisional
Probab=98.34 E-value=1.3e-08 Score=112.88 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=63.3
Q ss_pred cccCCCccceeeecce------eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCC-CCeEEEecCCCCChh
Q 016817 209 DDLKSSPKYVLRRVDF------AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNE-NPILILTHGDMLSTE 278 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaI------AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g-~tiIiiTHd~~l~~~ 278 (382)
..+..|||||+||++| ||+++.+|++++||| +||+..+..+.++|.... ....+ .|+|+||||+.+ +
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~-~~~~~~~~ii~ish~~~~--~ 873 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSL-KDSSDIPQVIMISHHREL--L 873 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHH-HhcCCCCeEEEEECchHH--H
Confidence 5688999999999975 599999999999999 999999999999887542 11123 489999998765 5
Q ss_pred hhhhhhhhhhhh
Q 016817 279 ERLDARLKICEY 290 (382)
Q Consensus 279 ~~~~d~v~ll~~ 290 (382)
.+||+++.+..
T Consensus 874 -~~~d~ii~~~~ 884 (895)
T PRK01156 874 -SVADVAYEVKK 884 (895)
T ss_pred -HhcCeEEEEEe
Confidence 57888887764
No 460
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.33 E-value=6.6e-08 Score=88.19 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=27.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccceeeeEeec
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTS 134 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~ 134 (382)
++||+||||||||||.++|++++ ..|.+.+.+.|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l-~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL-GNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCCCeEEEEec
Confidence 58999999999999999999988 44555555554
No 461
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.31 E-value=7.5e-08 Score=90.24 Aligned_cols=59 Identities=8% Similarity=-0.044 Sum_probs=40.3
Q ss_pred Cccceeeecceeeeehh--HHHHHHHHh---cCCCCcchhhhh---hccCccccccCCCCeEEEecCCCC
Q 016817 214 SPKYVLRRVDFAMVVSN--IAEIYKALK---AGDSKPLDATKR---LFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~--~P~iLLLDE---~LD~~~~~~i~~---~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
.|.++.+.+..++.++. +|+++++|| .+|......+.+ .++.+ ++.|.|+++++|+...
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l---~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNL---VDLGKTILITLHPYAF 167 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHH---HhCCCEEEEEecCCcC
Confidence 45677788888888877 789999999 334444443444 45544 3468899999996544
No 462
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.30 E-value=6.8e-08 Score=90.03 Aligned_cols=170 Identities=12% Similarity=0.004 Sum_probs=83.9
Q ss_pred cccC-CCCCCceeeeeeecccCCCchhHHHHHH--HhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 88 IQKG-GMDIPPVITILLMGFSGSGKSSLVNLMY--SVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 88 L~~i-sl~i~~Ge~~alvGpnGsGKSTLl~~i~--Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
|+.+ .=-+++|+++.|.||+|||||||...++ ++.+..+-+++..... ..+..... +.+|+.+|+.
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~----------~~~i~~~~-~~~g~~~~~~ 77 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES----------RESIIRQA-AQFGMDFEKA 77 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC----------HHHHHHHH-HHhCCCHHHH
Confidence 5443 3368999999999999999999988655 3333445566655311 11111111 3677777764
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc--ccccCCCccceeeecceeeeehhHHHHHHHHhcCC
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE--IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGD 242 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD 242 (382)
...+.+.+.+.+... . ... . .+..+.+.+... .+....+. ....|+++-.+..+++||
T Consensus 78 ~~~~~l~i~d~~~~~------~-~~~---~-~~~~~~~~~~~~~i~~~~~~~~------~~~~~vvIDsl~~l~~~~--- 137 (229)
T TIGR03881 78 IEEGKLVIIDALMKE------K-EDE---W-SLRELSIEELLNKVIEAKKYLG------YGHARLVIDSMSAFWLDK--- 137 (229)
T ss_pred hhcCCEEEEEccccc------c-ccc---c-ccccCCHHHHHHHHHHHHHhhc------cCceEEEecCchhhhccC---
Confidence 333333333322100 0 000 0 000111111100 00000110 113567777777777776
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCC------hhhhhhhhhhhhhh
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLS------TEERLDARLKICEY 290 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~------~~~~~~d~v~ll~~ 290 (382)
+.....+...|.+.+ ++.|.|+|+++|..... .+..+||-|+.++.
T Consensus 138 ~~~~r~~~~~l~~~l--~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~~ 189 (229)
T TIGR03881 138 PAMARKYSYYLKRVL--NRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFRK 189 (229)
T ss_pred hHHHHHHHHHHHHHH--HhCCCEEEEEecccccCCCCcccceEEEEeEEEEEEE
Confidence 111233333333332 45699999999953321 23446777777765
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.28 E-value=3.8e-08 Score=111.48 Aligned_cols=74 Identities=8% Similarity=0.065 Sum_probs=62.9
Q ss_pred cccCCCccceeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL 281 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~ 281 (382)
+.+.+||||||++++||++|+. +|++++||| +||+.++..+.++|.++. .+.++|+|||+... . .+
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~----~~~~~i~~t~~~~~--~-~~ 1142 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA----GEAQFIVVSLRSPM--I-EY 1142 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc----CCCeEEEEECcHHH--H-Hh
Confidence 6778999999999999999985 679999999 999999999999999873 35789999997543 4 57
Q ss_pred hhhhhhhh
Q 016817 282 DARLKICE 289 (382)
Q Consensus 282 ~d~v~ll~ 289 (382)
||+++.+.
T Consensus 1143 ~d~~~~~~ 1150 (1164)
T TIGR02169 1143 ADRAIGVT 1150 (1164)
T ss_pred cceeEeEE
Confidence 78776554
No 464
>PRK08149 ATP synthase SpaL; Validated
Probab=98.26 E-value=3.6e-07 Score=92.87 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=53.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc---ceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~---G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+++++ +.+.+|++++|+||||+|||||+++|++... +. |.|..+|+++.+.. .......+..++++|+.
T Consensus 141 aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~------~~~l~~~~~~~~~vV~~ 213 (428)
T PRK08149 141 AIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFV------ESLRASSRREKCVLVYA 213 (428)
T ss_pred EEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHH------HHHhhcccccceEEEEE
Confidence 69999 9999999999999999999999999999887 54 77877777553221 11112122247889988
Q ss_pred eCC
Q 016817 163 DSR 165 (382)
Q Consensus 163 ~~~ 165 (382)
...
T Consensus 214 ~sd 216 (428)
T PRK08149 214 TSD 216 (428)
T ss_pred CCC
Confidence 653
No 465
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.22 E-value=5.4e-07 Score=81.59 Aligned_cols=36 Identities=36% Similarity=0.334 Sum_probs=29.3
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecC
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i 135 (382)
|++++|+||||||||||+++|++.... .+.+.+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEEC
Confidence 789999999999999999999987653 466655543
No 466
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.21 E-value=1.6e-06 Score=77.60 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=44.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcc-----cceeehhhhhh-hHhhhccceeeEeCCCCChhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSS-----HTITMYMEEHN-VMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~-----~~~~~~~~~~~-~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|++++|+||||||||||++.|++.+...|.+.+....+.... ........+.. ..+...+++++|.+.++...+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 578999999999999999999998774465555332111000 00011111211 122335788888866655444
Q ss_pred h
Q 016817 172 V 172 (382)
Q Consensus 172 v 172 (382)
+
T Consensus 81 ~ 81 (179)
T TIGR02322 81 A 81 (179)
T ss_pred H
Confidence 3
No 467
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.18 E-value=1.4e-06 Score=88.72 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=57.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+++++ |.+.+|++++|+|+||+|||||+++|+|... +.|.+.+.|..-.+... ...+...... ...+++++++.
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~---~~~~~~~~~~-~~~tvvv~~~s 209 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVRE---FIEHHLGEEG-RKRSVLVVSTS 209 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHH---HHHHHhcccc-ccceEEEeccc
Confidence 69999 9999999999999999999999999999998 78888876663322110 0001110001 13567888887
Q ss_pred CCChhhhh
Q 016817 166 GFNYNRVH 173 (382)
Q Consensus 166 l~~~~tv~ 173 (382)
.+|..+..
T Consensus 210 ~~p~~~r~ 217 (422)
T TIGR02546 210 DRPSLERL 217 (422)
T ss_pred cCCHHHHH
Confidence 77765433
No 468
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.17 E-value=8.2e-07 Score=66.15 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=28.9
Q ss_pred cccCCCCCCc-eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPP-VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~-Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++.++++.+ |+++.|.||||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4445566764 67999999999999999999986654
No 469
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.17 E-value=9e-07 Score=90.09 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=53.7
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
+.++.++++..|..+-+ +++++ |.+.+|+.++|+|+||+|||||+++|+|+.. +.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~tGi~-----aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMTGIR-----AIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCCCce-----eeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 35677788888865532 69999 9999999999999999999999999999988 7887777776
No 470
>PRK02224 chromosome segregation protein; Provisional
Probab=98.13 E-value=1.3e-07 Score=104.84 Aligned_cols=76 Identities=13% Similarity=-0.016 Sum_probs=62.1
Q ss_pred cccCCCccceee------ecceeeeehhH-----H-HHHHHHh---cCCCCcchhhhhhccCccccccCCC-CeEEEecC
Q 016817 209 DDLKSSPKYVLR------RVDFAMVVSNI-----A-EIYKALK---AGDSKPLDATKRLFSAPGLRKCNEN-PILILTHG 272 (382)
Q Consensus 209 ~~~~~LSGGqkQ------RvaIAraL~~~-----P-~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~-tiIiiTHd 272 (382)
..|..||||||| |++||++++.+ | +++|+|| +||+..+..+.++|..+ ...|. +||+||||
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~---~~~~~~qviiish~ 853 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESM---RRLGVEQIVVVSHD 853 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHH---HhcCCCeEEEEECC
Confidence 457899999999 99999999874 2 5799999 99999999999999987 33454 79999998
Q ss_pred CCCChhhhhhhhhhhhhh
Q 016817 273 DMLSTEERLDARLKICEY 290 (382)
Q Consensus 273 ~~l~~~~~~~d~v~ll~~ 290 (382)
+.+ +. .+|+++.+..
T Consensus 854 ~~~--~~-~ad~~~~~~~ 868 (880)
T PRK02224 854 DEL--VG-AADDLVRVEK 868 (880)
T ss_pred hHH--HH-hcCeeEEeec
Confidence 766 54 5777777753
No 471
>PRK01889 GTPase RsgA; Reviewed
Probab=98.11 E-value=9.3e-07 Score=88.33 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=50.5
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
++.+.-.+++|++++|+|+||+|||||++.|+|... ..|+|.+++..... + .+.+.+++++|+..+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~----t---------t~~~~l~~l~~~~~l 251 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH----T---------TTHRELHPLPSGGLL 251 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc----h---------hhhccEEEecCCCee
Confidence 444555678899999999999999999999999999 89999987642110 0 111367777777655
Q ss_pred CC
Q 016817 167 FN 168 (382)
Q Consensus 167 ~~ 168 (382)
++
T Consensus 252 ~D 253 (356)
T PRK01889 252 ID 253 (356)
T ss_pred cC
Confidence 54
No 472
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.10 E-value=2.1e-06 Score=89.77 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=51.4
Q ss_pred eeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEE 178 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~ 178 (382)
-++||.||||||||||++.|+++++..|.|.+||... .. +.+++.|+++.+++..++.+++..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~----------------~~-~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYND----------------SS-RIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceec----------------ch-hhhCccCCChhhcchhHHHHHHHH
Confidence 5999999999999999999999987778999998621 00 145678888888887788888854
Q ss_pred H
Q 016817 179 L 179 (382)
Q Consensus 179 ~ 179 (382)
.
T Consensus 129 L 129 (656)
T PLN02318 129 L 129 (656)
T ss_pred H
Confidence 3
No 473
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.09 E-value=1.7e-06 Score=88.15 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=51.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc---ceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~---G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
+++.+ |.+.+|++++|+|+||+|||||+++|+|+.+ +. |.|.+.|+++.+.-.. ....-. +..++|||
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~------~~~~~~-~~~tvVv~ 236 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIEN------ILGAEG-RARSVVIA 236 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHh------hcCcCC-CceEEEEE
Confidence 45555 9999999999999999999999999999988 53 8888888765321100 000001 25788999
Q ss_pred eCC
Q 016817 163 DSR 165 (382)
Q Consensus 163 ~~~ 165 (382)
++.
T Consensus 237 ~~a 239 (455)
T PRK07960 237 APA 239 (455)
T ss_pred ECC
Confidence 863
No 474
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.09 E-value=1.1e-07 Score=101.25 Aligned_cols=101 Identities=5% Similarity=-0.094 Sum_probs=78.3
Q ss_pred CccccccccccccccCCCccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEec
Q 016817 197 DDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTH 271 (382)
Q Consensus 197 l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTH 271 (382)
|-.+||.-.-.+|...+|||||.||+.||.-+-..= =+++||| ||-+....++++.|+++ ++.|.|+|+|.|
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~L---RDlGNTviVVEH 541 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRL---RDLGNTVIVVEH 541 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHH---HhcCCeEEEEec
Confidence 445677644445889999999999999998775542 2689999 99999999999999999 778999999999
Q ss_pred CCCCChhhhhhhhhhhhhh---------cccccccceeeEE
Q 016817 272 GDMLSTEERLDARLKICEY---------LGVSEISGVYDIV 303 (382)
Q Consensus 272 d~~l~~~~~~~d~v~ll~~---------~~~~~~~~v~~~~ 303 (382)
|.+. +. .+|+|+=+-- +..|++++++..+
T Consensus 542 Dedt--i~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 542 DEDT--IR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CHHH--Hh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 6554 54 6676665532 5567777777654
No 475
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.08 E-value=6.5e-07 Score=81.15 Aligned_cols=71 Identities=17% Similarity=0.004 Sum_probs=58.7
Q ss_pred ceeeecceeeeehhHHHHHHHHh-cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK-AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE-~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+-+|..||.++..+|+.+..+| .+||.....+.+.+.+. .+.|.+|++.+|.+........||.+++++.
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le~ilhP~i~~~i~~~i~~~---~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLNNLLHPLIREWMKKLLAQF---QSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHHHhhCHHHHHHHHHHHHHh---hcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 88999999999999999999999 99999999999999886 3346799999995533345667777777654
No 476
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.08 E-value=2.2e-06 Score=80.29 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=30.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i 130 (382)
.+..++||.||||||||||++.|+++++ .+|.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v 66 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAI 66 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceE
Confidence 4578999999999999999999999999 7888433
No 477
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.07 E-value=4.9e-06 Score=80.80 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=32.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeec
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTS 134 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~ 134 (382)
.-.++||.||||||||||+++|.+++. .+|+|.+-+.|
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 346999999999999999999999986 37888876664
No 478
>PLN02796 D-glycerate 3-kinase
Probab=98.07 E-value=9.4e-07 Score=87.26 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=41.3
Q ss_pred CcccCCCCC---Cceee-----eeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecC
Q 016817 87 GIQKGGMDI---PPVIT-----ILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSS 135 (382)
Q Consensus 87 vL~~isl~i---~~Ge~-----~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i 135 (382)
+++++++.+ ++|+. +||+||||||||||++.|.+++. . .|.|.+||..+
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 578888887 56776 99999999999999999999997 3 57888888743
No 479
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.06 E-value=6.1e-07 Score=84.48 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=43.2
Q ss_pred cceeeecceee----------------eehhHHHHHHHHh--c------CCCCcchhhhhhccCccccccCCCCeEEEec
Q 016817 216 KYVLRRVDFAM----------------VVSNIAEIYKALK--A------GDSKPLDATKRLFSAPGLRKCNENPILILTH 271 (382)
Q Consensus 216 GGqkQRvaIAr----------------aL~~~P~iLLLDE--~------LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTH 271 (382)
+|+.|++.+++ +...+|+++++|. . +|+.....+++.|.+++ ++.|.|||+++|
T Consensus 80 ~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a--~~~g~avl~v~H 157 (239)
T cd01125 80 SGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIA--AQTGAAILLVHH 157 (239)
T ss_pred ccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHH--HHhCCEEEEEec
Confidence 56777877776 3346899999998 3 57777778888888874 456999999999
Q ss_pred CC
Q 016817 272 GD 273 (382)
Q Consensus 272 d~ 273 (382)
..
T Consensus 158 ~~ 159 (239)
T cd01125 158 VR 159 (239)
T ss_pred cC
Confidence 54
No 480
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.05 E-value=1.3e-06 Score=90.63 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=52.6
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+.|+++.|+... +++++++.+..|+.++|+||||||||||++.|.|+++ .+|++.+++..+
T Consensus 187 ~~d~~~v~Gq~~------~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQ------GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHH------HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 347777664333 6899999999999999999999999999999999999 899999988754
No 481
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.04 E-value=2.5e-06 Score=83.97 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=42.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
+++++ |.+.+|++++|+|+||+|||||+++|+|... +.|.+.+-|..
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 69999 9999999999999999999999999999998 77888777753
No 482
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.02 E-value=2.9e-06 Score=96.76 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=37.0
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEee
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQT 133 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~ 133 (382)
++++.+++++++|+|++|+|||||++.+++-+. ..|.+.+++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 467788999999999999999999999977665 4899988763
No 483
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.01 E-value=1.6e-06 Score=86.58 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=25.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++|..++|+||+||||||++++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999984
No 484
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.00 E-value=3.1e-06 Score=86.51 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=43.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
+++++ |.+.+|++++|+|+||+|||||+++|+|... +.|.|.+.|+.
T Consensus 153 ~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 153 IVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred eccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 69999 9999999999999999999999999999988 88998888863
No 485
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.99 E-value=4.2e-06 Score=76.58 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=34.7
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEeecC
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSS 135 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~~i 135 (382)
++|.+++|+|+||||||||.+.|++.+. . .|.+.++|.++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 5789999999999999999999999876 3 56899988653
No 486
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.98 E-value=3.7e-06 Score=83.64 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=30.2
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEe
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQ 132 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G 132 (382)
.++..+.|.||+||||||+++.+.+.+. . .|.|....
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 4678999999999999999999999776 3 56665543
No 487
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.97 E-value=3.7e-06 Score=76.84 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=26.1
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999864
No 488
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.96 E-value=4.8e-06 Score=85.24 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=42.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
+++++ |.+.+|++++|+|+||+|||||+++|+|..+ +.|.+...|..
T Consensus 153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 69999 9999999999999999999999999999988 77877776653
No 489
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.93 E-value=5.9e-06 Score=83.99 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=42.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
+++ .+|.+.+|+.++|+|+||+|||||+++|+++.+ +.|.|.+.|..
T Consensus 130 aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer 177 (418)
T TIGR03498 130 VID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER 177 (418)
T ss_pred EEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence 454 699999999999999999999999999999988 89998888874
No 490
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.89 E-value=1.3e-05 Score=77.77 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=34.3
Q ss_pred ccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeee
Q 016817 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (382)
Q Consensus 89 ~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i 130 (382)
+.+...+. +++++++|+||+|||||+|.|.|... ..|+|..
T Consensus 153 ~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 153 DELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred HHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 33444555 68999999999999999999999988 8898875
No 491
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.89 E-value=7e-06 Score=83.43 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=44.1
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+++++ |.+.+|++++|+|+||+|||||+++|++..+ +.|.|.+.|+..
T Consensus 127 ~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 127 AIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred eeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 69999 9999999999999999999999999999988 889888888643
No 492
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.88 E-value=6.5e-06 Score=73.16 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=41.9
Q ss_pred ecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHH
Q 016817 104 MGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEE 178 (382)
Q Consensus 104 vGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~ 178 (382)
+|+||||||||+++|++.+ |.+.++|..+.. ....+....|+.+|+....++.++.++..+
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~~-----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP-----------RRNIEKMASGEPLNDDDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCeEEeCccCCc-----------hhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence 6999999999999999886 677888742210 011222356888888655666777666654
No 493
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.88 E-value=1.6e-06 Score=92.40 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=66.0
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccce--------eeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGL--------VLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~--------I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 168 (382)
.+.+.|+||||+|||||+++|.++.. ..|+ |.++|..+. .. . . .+ ++ .++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d------~---~-----~i----~~-~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WD------P---R-----EV----TN-PLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CC------H---H-----HH----hH-HhcC
Confidence 45699999999999999999999875 4443 555554321 00 0 0 00 00 0111
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh--cCCCCcc
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--AGDSKPL 246 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--~LD~~~~ 246 (382)
. +.+.. .+...+.++.+|+.+... ..+.++||| +|++|| .||+..+
T Consensus 235 ~--~~~~~-------------~~~a~~~l~~~gl~~~~~-g~v~~asgG----------------vL~LDEi~~Ld~~~Q 282 (615)
T TIGR02903 235 S--VHDPI-------------YQGARRDLAETGVPEPKT-GLVTDAHGG----------------VLFIDEIGELDPLLQ 282 (615)
T ss_pred C--ccHHH-------------HHHHHHHHHHcCCCchhc-CchhhcCCC----------------eEEEeccccCCHHHH
Confidence 0 01111 011222355566665444 788899999 899999 9999999
Q ss_pred hhhhhhccC
Q 016817 247 DATKRLFSA 255 (382)
Q Consensus 247 ~~i~~~l~~ 255 (382)
..+++.|++
T Consensus 283 ~~Ll~~Le~ 291 (615)
T TIGR02903 283 NKLLKVLED 291 (615)
T ss_pred HHHHHHHhh
Confidence 988888875
No 494
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.87 E-value=1.1e-06 Score=97.03 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=72.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
=+|++|. +.+.++.|.|||++||||+||.++-+.- .-|. |||-+..
T Consensus 598 pnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~-------------------------------~VPa~~a 645 (854)
T PRK05399 598 PNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS-------------------------------FVPAESA 645 (854)
T ss_pred ecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC-------------------------------ceeccce
Confidence 4556666 5678999999999999999999986531 1221 3332211
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehh--HHHHHHHHh---c
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN--IAEIYKALK---A 240 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~--~P~iLLLDE---~ 240 (382)
..++.+ ++..++|..+ ....++|--+.....++++|-. ++.++|+|| |
T Consensus 646 ---~i~~~d--------------------~I~triga~d----~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrG 698 (854)
T PRK05399 646 ---RIGIVD--------------------RIFTRIGASD----DLASGRSTFMVEMTETANILNNATERSLVLLDEIGRG 698 (854)
T ss_pred ---EecccC--------------------eeeeccCccc----ccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 111111 1122223222 2234556655566666666544 889999999 4
Q ss_pred CCCCcch-hhhhhccCccccccCCCCeEEEecCCCC
Q 016817 241 GDSKPLD-ATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 241 LD~~~~~-~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
-++..-. ..+..++.+. +..+.++|++||+.++
T Consensus 699 Ts~~dg~aia~aile~l~--~~~~~~~l~aTH~~el 732 (854)
T PRK05399 699 TSTYDGLSIAWAVAEYLH--DKIGAKTLFATHYHEL 732 (854)
T ss_pred CCcchhHHHHHHHHHHHH--hcCCceEEEEechHHH
Confidence 4433333 3444555552 2236899999996444
No 495
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.86 E-value=7.1e-06 Score=83.33 Aligned_cols=63 Identities=16% Similarity=0.037 Sum_probs=50.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
+..+-+.++..|..+- .+++.+ |.+.+|++++|+|+||+|||||+++|++... +.+.+...|.
T Consensus 110 ~~~~R~~~~~~~~tGi-----~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGe 173 (411)
T TIGR03496 110 NPLKRAPIDEPLDVGV-----RAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGE 173 (411)
T ss_pred CHHhccCcceEeeeeE-----Eeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEec
Confidence 3445556666665442 168888 9999999999999999999999999999988 7776666665
No 496
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=1.1e-05 Score=87.05 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=40.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc--eeeeEeec
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTS 134 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G--~I~i~G~~ 134 (382)
++++.++.+++|+++++|||||+||||++..|++.+. ..| +|.+-..|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 4778888898899999999999999999999999986 555 66665554
No 497
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.84 E-value=9.2e-06 Score=75.84 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=26.2
Q ss_pred eeeeecccCCCchhHHHHHHHhhc---ccceeee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS---RSGLVLF 130 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i 130 (382)
++||.||||||||||++.|.+++. .+|+|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 589999999999999999999986 2455554
No 498
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.83 E-value=8.6e-06 Score=83.02 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=43.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+++++ +.+.+|++++|+|+||+|||||+++|++... +.+.|...|..-
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGerg 195 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG 195 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccc
Confidence 69999 9999999999999999999999999999887 788888777643
No 499
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.82 E-value=2e-05 Score=76.04 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=26.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
++||+|+||||||||++.|+++++ ..|.+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi 31 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVI 31 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 589999999999999999999998 555443
No 500
>PRK00098 GTPase RsgA; Reviewed
Probab=97.82 E-value=2e-05 Score=76.84 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=31.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeee
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i 130 (382)
+|++++++|+||+|||||+|.|.|... ..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 589999999999999999999999988 8899876
Done!