Query 016817
Match_columns 382
No_of_seqs 455 out of 2786
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 5.7E-52 2E-56 410.4 -12.9 225 63-301 21-253 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 7.6E-51 2.6E-55 404.6 -16.4 214 66-302 3-224 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 6.2E-51 2.1E-55 402.6 -17.1 218 66-302 4-229 (359)
4 3tif_A Uncharacterized ABC tra 100.0 3.5E-50 1.2E-54 376.5 -13.6 212 66-290 1-220 (235)
5 3gfo_A Cobalt import ATP-bindi 100.0 1.5E-49 5E-54 380.6 -13.2 219 64-301 5-233 (275)
6 1z47_A CYSA, putative ABC-tran 100.0 1.8E-49 6.2E-54 392.0 -15.6 215 64-301 12-235 (355)
7 2it1_A 362AA long hypothetical 100.0 2.3E-49 7.8E-54 392.3 -15.3 214 66-302 3-224 (362)
8 2yyz_A Sugar ABC transporter, 100.0 1.8E-49 6.1E-54 392.7 -16.3 214 66-302 3-224 (359)
9 4g1u_C Hemin import ATP-bindin 100.0 1.7E-49 5.9E-54 378.4 -17.3 220 64-305 9-241 (266)
10 2pcj_A ABC transporter, lipopr 100.0 5.5E-49 1.9E-53 365.8 -13.8 207 65-290 3-214 (224)
11 1v43_A Sugar-binding transport 100.0 3.5E-49 1.2E-53 392.3 -16.3 215 66-303 11-233 (372)
12 3d31_A Sulfate/molybdate ABC t 100.0 1.2E-48 3.9E-53 385.6 -13.8 210 66-301 1-217 (348)
13 1g29_1 MALK, maltose transport 100.0 3.8E-49 1.3E-53 392.4 -17.6 220 66-302 3-230 (372)
14 1g6h_A High-affinity branched- 100.0 9.9E-49 3.4E-53 371.2 -14.2 206 64-290 5-228 (257)
15 1b0u_A Histidine permease; ABC 100.0 9.5E-49 3.3E-53 372.4 -15.1 223 65-300 5-241 (262)
16 1ji0_A ABC transporter; ATP bi 100.0 1.2E-48 4.1E-53 367.1 -15.1 206 64-290 4-214 (240)
17 2olj_A Amino acid ABC transpor 100.0 1.3E-48 4.4E-53 371.8 -15.4 216 65-300 23-247 (263)
18 1oxx_K GLCV, glucose, ABC tran 100.0 9.1E-49 3.1E-53 387.2 -17.1 220 66-301 3-230 (353)
19 3nh6_A ATP-binding cassette SU 100.0 2.5E-48 8.7E-53 377.0 -13.9 237 36-300 15-276 (306)
20 1vpl_A ABC transporter, ATP-bi 100.0 3.2E-48 1.1E-52 367.7 -14.9 204 64-290 13-221 (256)
21 2onk_A Molybdate/tungstate ABC 100.0 1.5E-47 5.2E-52 359.8 -14.8 208 66-300 1-215 (240)
22 1sgw_A Putative ABC transporte 100.0 8.1E-47 2.8E-51 349.0 -11.0 197 64-290 8-208 (214)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 3.8E-46 1.3E-50 352.1 -10.4 204 66-290 3-219 (250)
24 2zu0_C Probable ATP-dependent 100.0 2.4E-46 8.2E-51 356.8 -11.9 208 63-290 17-240 (267)
25 2yz2_A Putative ABC transporte 100.0 2.6E-46 8.9E-51 356.4 -12.2 212 66-300 2-226 (266)
26 2ihy_A ABC transporter, ATP-bi 100.0 9.4E-47 3.2E-51 361.8 -17.7 205 64-290 19-238 (279)
27 3gd7_A Fusion complex of cysti 100.0 6.2E-46 2.1E-50 371.1 -13.0 211 63-302 16-243 (390)
28 1mv5_A LMRA, multidrug resista 100.0 1.4E-45 4.9E-50 346.7 -11.3 198 66-290 1-212 (243)
29 2ixe_A Antigen peptide transpo 100.0 4.6E-46 1.6E-50 355.7 -15.0 204 64-290 14-231 (271)
30 2ff7_A Alpha-hemolysin translo 100.0 7.1E-46 2.4E-50 349.8 -13.7 199 65-290 6-218 (247)
31 3qf4_B Uncharacterized ABC tra 100.0 1E-45 3.5E-50 388.9 -15.3 249 23-300 304-577 (598)
32 3b5x_A Lipid A export ATP-bind 100.0 2.2E-45 7.6E-50 385.2 -12.7 251 23-300 292-566 (582)
33 4a82_A Cystic fibrosis transme 100.0 7.7E-46 2.6E-50 388.4 -18.8 251 23-300 288-563 (578)
34 2qi9_C Vitamin B12 import ATP- 100.0 1.9E-45 6.4E-50 347.3 -15.0 194 66-290 4-208 (249)
35 3b60_A Lipid A export ATP-bind 100.0 2.5E-45 8.7E-50 384.7 -16.6 251 23-299 292-565 (582)
36 2nq2_C Hypothetical ABC transp 100.0 4.4E-45 1.5E-49 345.6 -14.0 192 66-290 4-204 (253)
37 3qf4_A ABC transporter, ATP-bi 100.0 3.4E-45 1.2E-49 384.1 -18.4 249 24-300 291-565 (587)
38 2ghi_A Transport protein; mult 100.0 8.3E-45 2.8E-49 344.9 -14.3 201 64-290 15-228 (260)
39 2yl4_A ATP-binding cassette SU 100.0 8.1E-45 2.8E-49 381.8 -16.2 255 23-301 289-570 (595)
40 2pjz_A Hypothetical protein ST 100.0 7E-44 2.4E-48 339.2 -12.5 205 66-302 1-216 (263)
41 4f4c_A Multidrug resistance pr 100.0 1E-43 3.5E-48 402.0 -13.5 254 23-301 1025-1304(1321)
42 2cbz_A Multidrug resistance-as 100.0 8.8E-43 3E-47 326.7 -11.5 189 66-290 3-203 (237)
43 2pze_A Cystic fibrosis transme 100.0 5.1E-43 1.7E-47 326.6 -13.8 186 64-290 4-204 (229)
44 4f4c_A Multidrug resistance pr 100.0 6.6E-43 2.3E-47 395.4 -16.5 249 23-298 363-638 (1321)
45 2bbs_A Cystic fibrosis transme 100.0 5.4E-41 1.9E-45 323.5 -11.5 203 42-290 10-233 (290)
46 3g5u_A MCG1178, multidrug resi 100.0 2.6E-41 8.9E-46 381.5 -19.8 250 24-299 336-611 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 2.5E-40 8.4E-45 373.5 -12.2 252 25-300 980-1257(1284)
48 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-38 4E-43 331.0 -11.8 191 64-290 267-461 (538)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 5.4E-38 1.8E-42 326.2 -12.2 189 64-290 285-477 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 5.6E-38 1.9E-42 329.9 -12.8 189 64-290 355-547 (607)
51 3bk7_A ABC transporter ATP-bin 100.0 1.3E-36 4.3E-41 319.7 -12.4 193 70-290 95-303 (607)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-36 6.6E-41 314.5 -11.8 196 67-290 21-233 (538)
53 3j16_B RLI1P; ribosome recycli 100.0 4.1E-36 1.4E-40 315.5 -11.5 196 70-301 350-559 (608)
54 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-34 4.7E-39 307.9 -12.6 210 69-288 18-276 (670)
55 2iw3_A Elongation factor 3A; a 100.0 2E-35 7E-40 321.9 -20.4 209 64-290 669-973 (986)
56 3ozx_A RNAse L inhibitor; ATP 100.0 4.9E-34 1.7E-38 296.2 -14.4 189 71-290 4-212 (538)
57 3j16_B RLI1P; ribosome recycli 100.0 4.1E-33 1.4E-37 292.8 -8.0 203 70-290 81-296 (608)
58 2npi_A Protein CLP1; CLP1-PCF1 100.0 2E-32 6.7E-37 279.2 -3.9 184 63-289 115-323 (460)
59 2iw3_A Elongation factor 3A; a 100.0 6E-33 2.1E-37 302.5 -13.7 182 66-290 435-620 (986)
60 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-32 4.7E-37 292.5 -12.0 192 86-288 336-618 (670)
61 3pih_A Uvrabc system protein A 99.9 1.3E-29 4.5E-34 275.7 -14.7 104 191-300 783-901 (916)
62 2vf7_A UVRA2, excinuclease ABC 99.9 5.9E-29 2E-33 268.6 -13.8 209 64-289 500-806 (842)
63 2v9p_A Replication protein E1; 99.9 1.6E-28 5.4E-33 237.7 -10.6 190 26-290 55-252 (305)
64 3b85_A Phosphate starvation-in 99.9 1.4E-27 4.9E-32 219.2 -3.7 140 87-275 15-160 (208)
65 2r6f_A Excinuclease ABC subuni 99.9 1.6E-28 5.5E-33 266.2 -12.5 202 65-288 628-920 (972)
66 1znw_A Guanylate kinase, GMP k 99.9 1.6E-27 5.5E-32 217.4 -7.3 171 87-289 11-202 (207)
67 2ygr_A Uvrabc system protein A 99.9 6.1E-28 2.1E-32 262.5 -12.4 202 65-288 646-938 (993)
68 4aby_A DNA repair protein RECN 99.9 2.1E-27 7.2E-32 237.7 -8.7 70 214-290 296-370 (415)
69 1tq4_A IIGP1, interferon-induc 99.9 1.3E-26 4.5E-31 232.9 -4.1 169 87-286 38-248 (413)
70 1z6g_A Guanylate kinase; struc 99.9 1E-26 3.5E-31 214.4 -5.9 179 87-287 12-206 (218)
71 3aez_A Pantothenate kinase; tr 99.9 9.1E-26 3.1E-30 219.3 -4.8 179 61-290 38-244 (312)
72 2dpy_A FLII, flagellum-specifi 99.9 1.3E-25 4.3E-30 227.7 -6.8 199 64-300 129-343 (438)
73 4gp7_A Metallophosphoesterase; 99.9 7E-26 2.4E-30 200.9 -9.4 144 90-280 1-164 (171)
74 3b9q_A Chloroplast SRP recepto 99.9 3E-24 1E-28 207.8 -1.7 188 69-290 77-271 (302)
75 1ye8_A Protein THEP1, hypothet 99.9 1.5E-24 5.3E-29 194.2 -5.9 138 100-284 2-152 (178)
76 1tf7_A KAIC; homohexamer, hexa 99.9 1.6E-24 5.5E-29 224.3 -7.9 188 65-290 11-209 (525)
77 3sop_A Neuronal-specific septi 99.9 4E-24 1.4E-28 203.7 -5.6 145 100-275 4-152 (270)
78 1e69_A Chromosome segregation 99.9 3.6E-24 1.2E-28 208.5 -6.2 75 208-289 214-297 (322)
79 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 7.2E-24 2.5E-28 210.1 -7.2 77 208-290 274-359 (365)
80 2og2_A Putative signal recogni 99.8 4.3E-23 1.5E-27 203.9 -3.1 173 89-289 148-327 (359)
81 2jeo_A Uridine-cytidine kinase 99.8 5.3E-23 1.8E-27 192.3 -2.5 150 87-272 14-164 (245)
82 2pt7_A CAG-ALFA; ATPase, prote 99.8 3.3E-23 1.1E-27 202.7 -7.1 138 69-290 151-289 (330)
83 1rj9_A FTSY, signal recognitio 99.8 1.6E-22 5.5E-27 195.8 -3.1 158 97-275 101-260 (304)
84 2obl_A ESCN; ATPase, hydrolase 99.8 1.2E-22 4E-27 200.2 -10.3 200 64-299 43-253 (347)
85 2o8b_B DNA mismatch repair pro 99.8 2.3E-21 7.8E-26 213.9 -10.1 163 64-290 748-927 (1022)
86 2ehv_A Hypothetical protein PH 99.8 2E-21 7E-26 179.8 -9.8 167 88-290 19-207 (251)
87 2eyu_A Twitching motility prot 99.7 5E-20 1.7E-24 174.5 -1.3 141 65-289 4-146 (261)
88 3asz_A Uridine kinase; cytidin 99.7 1.8E-20 6.1E-25 170.2 -5.0 141 95-272 3-160 (211)
89 1cr0_A DNA primase/helicase; R 99.7 7.4E-21 2.5E-25 182.1 -8.3 178 87-290 24-234 (296)
90 2qnr_A Septin-2, protein NEDD5 99.7 9.2E-21 3.2E-25 183.0 -8.9 161 70-274 2-168 (301)
91 3szr_A Interferon-induced GTP- 99.7 1E-19 3.5E-24 191.5 -2.0 169 65-275 9-198 (608)
92 3qkt_A DNA double-strand break 99.7 3.4E-19 1.2E-23 174.5 -1.2 78 207-290 242-328 (339)
93 1tf7_A KAIC; homohexamer, hexa 99.7 9E-20 3.1E-24 188.7 -7.3 168 66-290 257-442 (525)
94 2bdt_A BH3686; alpha-beta prot 99.7 6.1E-19 2.1E-23 157.5 -1.0 158 98-286 2-168 (189)
95 1htw_A HI0065; nucleotide-bind 99.7 1.6E-18 5.5E-23 152.2 0.5 116 67-204 8-123 (158)
96 2i3b_A HCR-ntpase, human cance 99.7 7.5E-19 2.6E-23 158.7 -2.5 152 98-290 1-162 (189)
97 1zp6_A Hypothetical protein AT 99.7 3.8E-19 1.3E-23 158.5 -5.1 157 94-275 5-162 (191)
98 1lw7_A Transcriptional regulat 99.7 1.3E-19 4.5E-24 179.1 -10.2 168 88-296 158-350 (365)
99 2vf7_A UVRA2, excinuclease ABC 99.7 8.4E-19 2.9E-23 189.5 -6.5 87 196-288 362-453 (842)
100 3thx_B DNA mismatch repair pro 99.7 8.2E-19 2.8E-23 191.2 -7.9 138 87-285 662-805 (918)
101 3thx_A DNA mismatch repair pro 99.6 4.5E-18 1.5E-22 185.9 -6.0 141 87-290 651-799 (934)
102 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.6E-18 9E-23 156.6 -6.8 166 87-290 11-191 (235)
103 4a74_A DNA repair and recombin 99.6 7.3E-19 2.5E-23 160.5 -12.0 145 94-290 21-199 (231)
104 2yhs_A FTSY, cell division pro 99.6 2.4E-17 8.2E-22 168.2 -2.1 178 88-290 283-463 (503)
105 1nij_A Hypothetical protein YJ 99.6 9.5E-18 3.2E-22 163.0 -5.3 161 98-273 4-189 (318)
106 2o5v_A DNA replication and rep 99.6 2.5E-18 8.6E-23 169.9 -9.6 71 208-290 259-342 (359)
107 2f1r_A Molybdopterin-guanine d 99.6 6.7E-17 2.3E-21 143.7 0.3 113 99-235 3-125 (171)
108 1p9r_A General secretion pathw 99.6 2.7E-17 9.3E-22 165.6 -2.7 151 66-235 143-313 (418)
109 1pui_A ENGB, probable GTP-bind 99.6 5.3E-19 1.8E-23 159.4 -14.0 175 66-256 3-196 (210)
110 3jvv_A Twitching mobility prot 99.6 7.2E-17 2.5E-21 159.3 -0.1 130 87-288 105-243 (356)
111 1ewq_A DNA mismatch repair pro 99.6 6E-18 2E-22 181.7 -9.8 122 87-275 568-700 (765)
112 1s96_A Guanylate kinase, GMP k 99.6 1.7E-17 5.8E-22 153.1 -7.6 130 88-275 6-142 (219)
113 3e70_C DPA, signal recognition 99.6 9.1E-16 3.1E-20 149.8 3.5 149 94-272 125-278 (328)
114 3pih_A Uvrabc system protein A 99.6 4.6E-18 1.6E-22 185.1 -14.2 89 194-288 445-538 (916)
115 1nlf_A Regulatory protein REPA 99.6 1.1E-16 3.8E-21 152.0 -3.3 150 94-275 26-183 (279)
116 2qag_C Septin-7; cell cycle, c 99.5 1.6E-17 5.6E-22 167.1 -9.9 163 64-275 9-179 (418)
117 1wb9_A DNA mismatch repair pro 99.5 8.2E-17 2.8E-21 173.7 -6.1 142 87-290 597-744 (800)
118 1w1w_A Structural maintenance 99.5 3E-17 1E-21 165.6 -9.2 75 210-290 330-411 (430)
119 2qm8_A GTPase/ATPase; G protei 99.5 1.4E-17 4.7E-22 163.3 -11.3 177 66-256 29-258 (337)
120 2ewv_A Twitching motility prot 99.5 7.4E-16 2.5E-20 152.9 -1.4 164 87-275 127-351 (372)
121 2oap_1 GSPE-2, type II secreti 99.5 8.7E-16 3E-20 158.3 -1.0 181 87-283 249-458 (511)
122 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 1.5E-16 5.2E-21 138.2 -6.1 92 193-290 35-137 (148)
123 2yv5_A YJEQ protein; hydrolase 99.5 5.5E-16 1.9E-20 149.6 -3.1 121 94-226 161-300 (302)
124 1pzn_A RAD51, DNA repair and r 99.5 7.8E-17 2.7E-21 158.6 -10.1 145 87-274 119-287 (349)
125 2rcn_A Probable GTPase ENGC; Y 99.5 1.3E-15 4.5E-20 150.1 -2.0 126 88-234 206-334 (358)
126 2gza_A Type IV secretion syste 99.5 2E-16 6.9E-21 156.3 -8.0 153 68-290 137-301 (361)
127 2x8a_A Nuclear valosin-contain 99.5 6.4E-16 2.2E-20 147.1 -5.5 126 87-239 35-161 (274)
128 2bbw_A Adenylate kinase 4, AK4 99.5 7.5E-16 2.6E-20 143.5 -6.1 138 97-256 26-196 (246)
129 2qag_B Septin-6, protein NEDD5 99.4 9.9E-17 3.4E-21 161.3 -13.6 177 66-273 16-219 (427)
130 1in4_A RUVB, holliday junction 99.4 1.6E-15 5.4E-20 148.0 -5.9 160 65-257 17-193 (334)
131 1u0l_A Probable GTPase ENGC; p 99.4 2.9E-15 1E-19 144.3 -6.4 118 86-216 153-294 (301)
132 2r6f_A Excinuclease ABC subuni 99.4 1.1E-15 3.6E-20 166.2 -10.7 87 196-288 487-578 (972)
133 1ixz_A ATP-dependent metallopr 99.4 1E-14 3.5E-19 136.0 -3.5 143 66-239 25-169 (254)
134 1iy2_A ATP-dependent metallopr 99.4 8E-15 2.7E-19 138.9 -4.5 143 66-239 49-193 (278)
135 2cvh_A DNA repair and recombin 99.4 7.7E-15 2.6E-19 132.9 -6.0 150 87-290 8-184 (220)
136 2ygr_A Uvrabc system protein A 99.3 1.6E-15 5.4E-20 165.3 -13.1 87 196-288 504-595 (993)
137 3c8u_A Fructokinase; YP_612366 99.3 2.7E-14 9.2E-19 129.7 -3.0 115 95-239 19-138 (208)
138 1odf_A YGR205W, hypothetical 3 99.3 4E-14 1.4E-18 135.9 -3.2 124 95-245 28-169 (290)
139 1t9h_A YLOQ, probable GTPase E 99.3 6.7E-14 2.3E-18 135.3 -3.9 140 69-221 139-303 (307)
140 1sq5_A Pantothenate kinase; P- 99.3 3.8E-13 1.3E-17 129.8 0.7 134 63-239 34-192 (308)
141 1udx_A The GTP-binding protein 99.2 3.1E-14 1.1E-18 143.1 -10.8 164 88-286 147-320 (416)
142 3ec2_A DNA replication protein 99.2 7.3E-13 2.5E-17 117.0 -1.6 35 92-126 32-67 (180)
143 2kjq_A DNAA-related protein; s 99.2 1.1E-12 3.6E-17 113.7 -0.8 40 229-271 81-123 (149)
144 1lvg_A Guanylate kinase, GMP k 99.2 1.7E-13 6E-18 123.7 -7.1 33 224-256 116-152 (198)
145 4ad8_A DNA repair protein RECN 99.2 1.4E-13 5E-18 141.9 -9.5 75 209-290 392-472 (517)
146 3lnc_A Guanylate kinase, GMP k 99.2 3.1E-13 1.1E-17 124.4 -6.6 181 87-286 16-206 (231)
147 3tr0_A Guanylate kinase, GMP k 99.2 3.6E-12 1.2E-16 114.2 0.5 72 92-176 1-72 (205)
148 1sxj_E Activator 1 40 kDa subu 99.1 1.1E-12 3.9E-17 127.4 -4.4 134 99-275 37-176 (354)
149 3kta_B Chromosome segregation 99.1 2.9E-13 1E-17 120.4 -8.2 74 209-289 60-140 (173)
150 3euj_A Chromosome partition pr 99.1 1.2E-11 4.1E-16 126.2 2.4 51 87-138 19-70 (483)
151 1n0w_A DNA repair protein RAD5 99.1 1.5E-12 5.1E-17 119.5 -5.6 41 94-134 20-68 (243)
152 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.8E-11 6.1E-16 122.1 -1.0 159 94-290 16-198 (392)
153 2ius_A DNA translocase FTSK; n 99.0 1.2E-12 4.1E-17 134.5 -10.7 162 91-274 160-343 (512)
154 1vma_A Cell division protein F 99.0 1.6E-11 5.4E-16 118.7 -3.6 112 90-256 96-211 (306)
155 3k1j_A LON protease, ATP-depen 98.9 3.6E-12 1.2E-16 133.9 -10.9 163 70-255 38-227 (604)
156 1svm_A Large T antigen; AAA+ f 98.9 2.4E-10 8.1E-15 113.5 1.8 131 87-239 158-309 (377)
157 1qhl_A Protein (cell division 98.9 6.5E-11 2.2E-15 109.6 -2.9 68 92-163 22-91 (227)
158 3lda_A DNA repair protein RAD5 98.9 2.2E-10 7.6E-15 114.5 -0.0 41 94-134 174-222 (400)
159 2dhr_A FTSH; AAA+ protein, hex 98.9 3.1E-10 1.1E-14 116.5 0.9 143 66-239 40-184 (499)
160 2dr3_A UPF0273 protein PH0284; 98.9 2.6E-11 8.7E-16 111.3 -6.8 46 87-132 11-59 (247)
161 4eun_A Thermoresistant glucoki 98.9 4.5E-10 1.5E-14 101.0 1.3 74 90-177 21-94 (200)
162 3nwj_A ATSK2; P loop, shikimat 98.8 3.8E-10 1.3E-14 105.9 -0.8 54 64-122 15-72 (250)
163 3hr8_A Protein RECA; alpha and 98.8 1E-09 3.5E-14 108.1 1.8 135 94-271 57-196 (356)
164 1oix_A RAS-related protein RAB 98.8 4.2E-10 1.4E-14 100.1 -1.1 142 99-255 30-188 (191)
165 3auy_A DNA double-strand break 98.8 5.5E-11 1.9E-15 117.5 -8.1 75 209-290 276-360 (371)
166 3uie_A Adenylyl-sulfate kinase 98.7 2E-09 6.9E-14 96.6 0.8 49 87-135 14-64 (200)
167 1zu4_A FTSY; GTPase, signal re 98.7 1.4E-08 4.6E-13 98.6 6.4 86 88-178 95-186 (320)
168 4e22_A Cytidylate kinase; P-lo 98.7 6.1E-09 2.1E-13 97.3 2.2 60 96-164 25-96 (252)
169 3a00_A Guanylate kinase, GMP k 98.6 6.9E-09 2.4E-13 92.1 2.3 34 98-131 1-35 (186)
170 2f9l_A RAB11B, member RAS onco 98.6 1.8E-09 6.3E-14 96.2 -1.6 142 100-256 7-165 (199)
171 2vp4_A Deoxynucleoside kinase; 98.6 1.5E-09 5.1E-14 99.9 -2.4 45 88-135 10-54 (230)
172 2r6a_A DNAB helicase, replicat 98.6 4E-10 1.4E-14 114.2 -7.0 174 87-290 192-398 (454)
173 2px0_A Flagellar biosynthesis 98.6 1.5E-09 5E-14 104.3 -2.8 38 96-133 103-142 (296)
174 3t34_A Dynamin-related protein 98.6 2E-09 6.7E-14 105.7 -3.4 187 68-271 10-212 (360)
175 2j41_A Guanylate kinase; GMP, 98.6 2.5E-08 8.6E-13 88.9 3.9 34 93-126 1-35 (207)
176 3vaa_A Shikimate kinase, SK; s 98.5 3.5E-08 1.2E-12 88.4 2.8 36 87-122 14-49 (199)
177 1ls1_A Signal recognition part 98.5 1.2E-07 4.2E-12 90.8 6.4 59 67-135 77-136 (295)
178 1knq_A Gluconate kinase; ALFA/ 98.5 2.9E-08 9.8E-13 86.6 1.7 66 96-175 6-71 (175)
179 3kta_A Chromosome segregation 98.5 4.9E-08 1.7E-12 85.7 2.3 40 89-129 18-58 (182)
180 1jjv_A Dephospho-COA kinase; P 98.4 2.5E-08 8.7E-13 89.4 -0.7 71 215-290 61-132 (206)
181 1rz3_A Hypothetical protein rb 98.4 2E-07 6.7E-12 83.7 4.7 42 94-135 18-60 (201)
182 3tqc_A Pantothenate kinase; bi 98.4 3.7E-08 1.3E-12 95.6 -0.3 60 69-134 63-131 (321)
183 2p67_A LAO/AO transport system 98.4 7.8E-08 2.7E-12 93.8 1.8 65 66-136 30-95 (341)
184 1kgd_A CASK, peripheral plasma 98.3 1.5E-07 5.3E-12 82.9 3.0 36 97-132 4-41 (180)
185 3cr8_A Sulfate adenylyltranfer 98.3 4.3E-08 1.5E-12 101.8 -1.2 43 93-135 364-409 (552)
186 2zr9_A Protein RECA, recombina 98.3 2.7E-08 9.2E-13 97.6 -3.9 39 94-132 57-96 (349)
187 1cke_A CK, MSSA, protein (cyti 98.2 3.5E-07 1.2E-11 82.9 2.8 58 98-164 5-74 (227)
188 3tau_A Guanylate kinase, GMP k 98.1 9E-07 3.1E-11 79.9 2.6 28 96-123 6-33 (208)
189 1j8m_F SRP54, signal recogniti 98.1 5E-06 1.7E-10 79.6 6.8 61 67-136 75-137 (297)
190 3ice_A Transcription terminati 98.0 8.1E-07 2.8E-11 88.0 1.0 55 64-123 131-199 (422)
191 3ney_A 55 kDa erythrocyte memb 98.0 1.9E-06 6.4E-11 77.9 3.0 32 92-123 13-44 (197)
192 3m6a_A ATP-dependent protease 98.0 1E-06 3.4E-11 91.3 1.1 60 67-133 84-144 (543)
193 1kag_A SKI, shikimate kinase I 98.0 2.6E-06 8.7E-11 73.7 2.5 33 97-132 3-35 (173)
194 2ffh_A Protein (FFH); SRP54, s 98.0 8.8E-06 3E-10 81.7 6.6 60 67-136 77-137 (425)
195 2pez_A Bifunctional 3'-phospho 97.9 3.8E-06 1.3E-10 73.4 3.4 39 96-134 3-43 (179)
196 4ad8_A DNA repair protein RECN 97.9 2.1E-06 7.2E-11 88.2 0.7 35 87-122 50-84 (517)
197 2www_A Methylmalonic aciduria 97.9 7.5E-06 2.6E-10 80.0 4.5 41 96-136 72-113 (349)
198 2e87_A Hypothetical protein PH 97.9 2.9E-07 9.8E-12 90.2 -5.7 62 209-275 227-294 (357)
199 2qt1_A Nicotinamide riboside k 97.9 4.9E-06 1.7E-10 74.4 2.8 33 90-122 13-45 (207)
200 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 8.9E-06 3E-10 69.8 2.8 32 90-122 16-47 (149)
201 2yvu_A Probable adenylyl-sulfa 97.7 2E-05 6.7E-10 69.2 4.3 42 92-133 7-50 (186)
202 1m7g_A Adenylylsulfate kinase; 97.7 1.3E-05 4.6E-10 72.0 2.9 42 93-134 20-64 (211)
203 4eaq_A DTMP kinase, thymidylat 97.7 1.6E-05 5.4E-10 73.1 3.4 42 88-129 13-57 (229)
204 1fnn_A CDC6P, cell division co 97.7 2.5E-06 8.4E-11 83.0 -2.3 41 231-274 125-170 (389)
205 2xau_A PRE-mRNA-splicing facto 97.7 5.4E-07 1.9E-11 97.1 -7.8 62 209-273 186-252 (773)
206 2dy1_A Elongation factor G; tr 97.6 2.6E-05 9.1E-10 82.6 3.0 65 92-167 3-70 (665)
207 1y63_A LMAJ004144AAA protein; 97.5 3.4E-05 1.2E-09 67.8 2.8 32 90-121 2-33 (184)
208 2qor_A Guanylate kinase; phosp 97.5 3.3E-05 1.1E-09 69.0 2.7 30 94-123 8-37 (204)
209 2p5t_B PEZT; postsegregational 97.5 4.7E-05 1.6E-09 70.6 3.7 45 88-134 23-67 (253)
210 1sxj_C Activator 1 40 kDa subu 97.5 7.1E-06 2.4E-10 79.3 -2.1 49 87-135 33-84 (340)
211 2qag_A Septin-2, protein NEDD5 97.5 8.8E-06 3E-10 79.9 -1.5 54 64-129 15-69 (361)
212 3qks_A DNA double-strand break 97.5 4.6E-05 1.6E-09 68.6 2.8 33 90-123 16-48 (203)
213 2if2_A Dephospho-COA kinase; a 97.4 4.9E-05 1.7E-09 67.5 2.6 21 100-120 3-23 (204)
214 3t61_A Gluconokinase; PSI-biol 97.4 7E-05 2.4E-09 66.5 2.8 33 98-133 18-50 (202)
215 2ga8_A Hypothetical 39.9 kDa p 97.3 3.7E-05 1.3E-09 75.3 0.6 37 87-123 11-49 (359)
216 2gj8_A MNME, tRNA modification 97.3 7.4E-05 2.5E-09 64.6 2.5 27 96-122 2-28 (172)
217 1ega_A Protein (GTP-binding pr 97.3 8.7E-05 3E-09 70.8 3.1 28 94-121 4-31 (301)
218 1f6b_A SAR1; gtpases, N-termin 97.3 5.5E-05 1.9E-09 67.0 1.0 33 87-120 15-47 (198)
219 1m2o_B GTP-binding protein SAR 97.3 9.6E-05 3.3E-09 64.9 2.6 33 87-120 13-45 (190)
220 1np6_A Molybdopterin-guanine d 97.3 0.00013 4.3E-09 64.4 3.3 35 99-133 7-45 (174)
221 1mky_A Probable GTP-binding pr 97.3 9.6E-05 3.3E-09 74.2 2.8 36 99-134 181-229 (439)
222 4a1f_A DNAB helicase, replicat 97.3 4.9E-06 1.7E-10 81.2 -6.6 43 88-130 36-79 (338)
223 3cm0_A Adenylate kinase; ATP-b 97.2 0.00015 5E-09 63.2 3.2 27 96-122 2-28 (186)
224 1lv7_A FTSH; alpha/beta domain 97.2 0.00015 5.3E-09 66.8 3.3 43 88-134 37-80 (257)
225 2ce7_A Cell division protein F 97.1 0.0002 6.9E-09 72.9 3.4 49 67-123 26-74 (476)
226 2wji_A Ferrous iron transport 97.1 0.00015 5.1E-09 62.0 2.1 24 99-122 4-27 (165)
227 1gtv_A TMK, thymidylate kinase 97.1 0.00014 4.9E-09 64.7 2.0 29 100-128 2-31 (214)
228 3kb2_A SPBC2 prophage-derived 97.1 0.0002 6.9E-09 61.1 2.8 24 100-123 3-26 (173)
229 1q3t_A Cytidylate kinase; nucl 97.1 0.0002 7E-09 65.4 3.0 29 94-122 12-40 (236)
230 3r20_A Cytidylate kinase; stru 97.1 9.6E-05 3.3E-09 68.3 0.7 25 98-122 9-33 (233)
231 2ohf_A Protein OLA1, GTP-bindi 97.0 0.0002 6.9E-09 71.1 2.5 28 94-121 18-45 (396)
232 3kl4_A SRP54, signal recogniti 97.0 0.00036 1.2E-08 70.1 4.3 40 97-136 96-136 (433)
233 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00032 1.1E-08 69.1 3.5 36 97-132 34-70 (392)
234 1qhx_A CPT, protein (chloramph 97.0 0.0003 1E-08 60.8 2.7 26 98-123 3-28 (178)
235 3auy_A DNA double-strand break 97.0 0.00021 7.2E-09 70.1 2.0 32 88-120 16-47 (371)
236 2qtf_A Protein HFLX, GTP-bindi 97.0 0.0002 6.9E-09 70.4 1.7 27 97-123 177-204 (364)
237 2wjg_A FEOB, ferrous iron tran 97.0 0.00027 9.3E-09 61.1 2.3 23 99-121 8-30 (188)
238 3iij_A Coilin-interacting nucl 96.9 0.00034 1.1E-08 60.8 2.7 29 94-122 7-35 (180)
239 2rhm_A Putative kinase; P-loop 96.9 0.00039 1.3E-08 60.6 2.9 27 96-122 3-29 (193)
240 1uf9_A TT1252 protein; P-loop, 96.9 0.00049 1.7E-08 60.5 3.6 32 98-133 8-39 (203)
241 1ypw_A Transitional endoplasmi 96.9 0.00039 1.3E-08 75.2 3.2 32 92-123 232-263 (806)
242 1kht_A Adenylate kinase; phosp 96.9 0.00037 1.3E-08 60.5 2.4 29 98-126 3-31 (192)
243 2zej_A Dardarin, leucine-rich 96.9 0.00029 1E-08 61.2 1.6 23 100-122 4-26 (184)
244 1vht_A Dephospho-COA kinase; s 96.9 0.00047 1.6E-08 61.8 3.0 24 97-120 3-26 (218)
245 2jaq_A Deoxyguanosine kinase; 96.8 0.00045 1.5E-08 60.7 2.8 24 100-123 2-25 (205)
246 3lw7_A Adenylate kinase relate 96.8 0.00039 1.3E-08 59.1 2.3 19 100-118 3-21 (179)
247 2ze6_A Isopentenyl transferase 96.8 0.00049 1.7E-08 63.8 3.0 25 99-123 2-26 (253)
248 1xjc_A MOBB protein homolog; s 96.8 0.00048 1.7E-08 60.4 2.7 24 100-123 6-29 (169)
249 1via_A Shikimate kinase; struc 96.8 0.00047 1.6E-08 59.6 2.5 23 100-122 6-28 (175)
250 3llm_A ATP-dependent RNA helic 96.8 0.00035 1.2E-08 63.7 1.6 27 94-120 72-98 (235)
251 3trf_A Shikimate kinase, SK; a 96.7 0.00063 2.2E-08 59.1 2.7 25 98-122 5-29 (185)
252 1ex7_A Guanylate kinase; subst 96.7 0.00058 2E-08 60.8 2.5 23 101-123 4-26 (186)
253 2v54_A DTMP kinase, thymidylat 96.7 0.00065 2.2E-08 59.8 2.6 26 97-122 3-28 (204)
254 3lxx_A GTPase IMAP family memb 96.7 0.00062 2.1E-08 62.0 2.3 27 100-126 31-58 (239)
255 1ly1_A Polynucleotide kinase; 96.7 0.00074 2.5E-08 58.0 2.7 22 99-120 3-24 (181)
256 2plr_A DTMP kinase, probable t 96.6 0.00088 3E-08 59.1 3.1 33 97-129 3-35 (213)
257 1gvn_B Zeta; postsegregational 96.6 0.00081 2.8E-08 63.7 3.0 38 94-132 29-66 (287)
258 2c95_A Adenylate kinase 1; tra 96.6 0.00082 2.8E-08 58.7 2.8 27 96-122 7-33 (196)
259 3ake_A Cytidylate kinase; CMP 96.6 0.00084 2.9E-08 59.2 2.8 23 100-122 4-26 (208)
260 2wwf_A Thymidilate kinase, put 96.6 0.001 3.4E-08 59.0 2.9 28 96-123 8-35 (212)
261 1nn5_A Similar to deoxythymidy 96.6 0.00091 3.1E-08 59.3 2.6 29 95-123 6-34 (215)
262 1tev_A UMP-CMP kinase; ploop, 96.5 0.00096 3.3E-08 57.9 2.6 26 97-122 2-27 (196)
263 3cf0_A Transitional endoplasmi 96.5 0.00078 2.7E-08 63.9 2.2 40 93-133 44-83 (301)
264 1nks_A Adenylate kinase; therm 96.5 0.001 3.5E-08 57.6 2.7 24 100-123 3-26 (194)
265 2z0h_A DTMP kinase, thymidylat 96.5 0.001 3.5E-08 58.1 2.7 27 100-126 2-28 (197)
266 3k53_A Ferrous iron transport 96.5 0.00087 3E-08 62.5 2.3 24 100-123 5-28 (271)
267 4fcw_A Chaperone protein CLPB; 96.5 0.0017 5.8E-08 61.0 4.2 32 98-129 47-79 (311)
268 2vli_A Antibiotic resistance p 96.5 0.00092 3.2E-08 57.8 2.1 26 97-122 4-29 (183)
269 2ged_A SR-beta, signal recogni 96.4 0.0013 4.5E-08 57.0 2.6 23 100-122 50-72 (193)
270 2bwj_A Adenylate kinase 5; pho 96.4 0.0013 4.3E-08 57.6 2.4 27 96-122 10-36 (199)
271 2pbr_A DTMP kinase, thymidylat 96.4 0.0017 5.9E-08 56.3 3.2 31 100-130 2-32 (195)
272 1qf9_A UMP/CMP kinase, protein 96.4 0.0021 7.1E-08 55.7 3.6 25 98-122 6-30 (194)
273 1z2a_A RAS-related protein RAB 96.3 0.0014 4.8E-08 55.0 2.4 22 100-121 7-28 (168)
274 2ce2_X GTPase HRAS; signaling 96.3 0.0015 5E-08 54.4 2.4 22 100-121 5-26 (166)
275 1a7j_A Phosphoribulokinase; tr 96.3 0.0015 5.1E-08 62.0 2.6 27 97-123 4-30 (290)
276 1kao_A RAP2A; GTP-binding prot 96.3 0.0016 5.6E-08 54.3 2.4 22 100-121 5-26 (167)
277 2dyk_A GTP-binding protein; GT 96.3 0.0016 5.6E-08 54.3 2.4 22 100-121 3-24 (161)
278 1u8z_A RAS-related protein RAL 96.2 0.0017 5.8E-08 54.2 2.4 22 100-121 6-27 (168)
279 1ukz_A Uridylate kinase; trans 96.2 0.0022 7.5E-08 56.6 3.2 28 95-122 12-39 (203)
280 1zd8_A GTP:AMP phosphotransfer 96.2 0.0016 5.5E-08 58.8 2.4 27 96-122 5-31 (227)
281 3fb4_A Adenylate kinase; psych 96.2 0.0017 5.8E-08 57.9 2.4 23 100-122 2-24 (216)
282 1e6c_A Shikimate kinase; phosp 96.2 0.0018 6.1E-08 55.4 2.5 24 99-122 3-26 (173)
283 1g16_A RAS-related protein SEC 96.2 0.0017 5.9E-08 54.5 2.4 22 100-121 5-26 (170)
284 1z0j_A RAB-22, RAS-related pro 96.2 0.0018 6.1E-08 54.4 2.4 23 100-122 8-30 (170)
285 1ek0_A Protein (GTP-binding pr 96.2 0.0018 6.3E-08 54.3 2.4 23 100-122 5-27 (170)
286 3bos_A Putative DNA replicatio 96.2 0.0026 9E-08 56.8 3.6 27 97-123 51-77 (242)
287 1aky_A Adenylate kinase; ATP:A 96.2 0.002 7E-08 57.8 2.8 26 97-122 3-28 (220)
288 1zak_A Adenylate kinase; ATP:A 96.2 0.0019 6.4E-08 58.1 2.6 26 97-122 4-29 (222)
289 1ky3_A GTP-binding protein YPT 96.2 0.0019 6.4E-08 55.0 2.4 22 100-121 10-31 (182)
290 1z08_A RAS-related protein RAB 96.2 0.0019 6.4E-08 54.4 2.4 22 100-121 8-29 (170)
291 2erx_A GTP-binding protein DI- 96.2 0.0017 5.8E-08 54.6 2.1 21 100-120 5-25 (172)
292 1c1y_A RAS-related protein RAP 96.2 0.0019 6.6E-08 54.1 2.4 22 100-121 5-26 (167)
293 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.002 6.7E-08 54.8 2.4 22 100-121 9-30 (177)
294 2fn4_A P23, RAS-related protei 96.2 0.0019 6.6E-08 54.8 2.4 22 100-121 11-32 (181)
295 2nzj_A GTP-binding protein REM 96.2 0.0016 5.6E-08 55.1 1.9 22 100-121 6-27 (175)
296 1svi_A GTP-binding protein YSX 96.2 0.002 6.7E-08 55.9 2.3 23 99-121 24-46 (195)
297 2cdn_A Adenylate kinase; phosp 96.1 0.0025 8.4E-08 56.3 3.0 26 97-122 19-44 (201)
298 2w58_A DNAI, primosome compone 96.1 0.0029 9.9E-08 55.7 3.4 25 99-123 55-79 (202)
299 3dl0_A Adenylate kinase; phosp 96.1 0.0021 7.1E-08 57.4 2.4 23 100-122 2-24 (216)
300 2pt5_A Shikimate kinase, SK; a 96.1 0.0021 7.3E-08 54.7 2.4 23 100-122 2-24 (168)
301 3pqc_A Probable GTP-binding pr 96.1 0.002 7E-08 55.5 2.3 23 100-122 25-47 (195)
302 2iyv_A Shikimate kinase, SK; t 96.1 0.002 6.9E-08 55.9 2.3 24 99-122 3-26 (184)
303 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0027 9.3E-08 58.9 3.3 31 97-127 3-33 (260)
304 3q72_A GTP-binding protein RAD 96.1 0.0013 4.6E-08 55.2 1.1 22 100-121 4-25 (166)
305 3q85_A GTP-binding protein REM 96.1 0.0018 6.2E-08 54.5 1.9 22 100-121 4-25 (169)
306 1r2q_A RAS-related protein RAB 96.1 0.0023 7.9E-08 53.6 2.4 22 100-121 8-29 (170)
307 3b1v_A Ferrous iron uptake tra 96.1 0.0019 6.7E-08 60.6 2.1 23 100-122 5-27 (272)
308 1zuh_A Shikimate kinase; alpha 96.1 0.0023 7.9E-08 54.7 2.4 24 99-122 8-31 (168)
309 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0023 7.9E-08 54.8 2.4 22 100-121 6-27 (189)
310 3lxw_A GTPase IMAP family memb 96.1 0.0021 7.3E-08 59.2 2.3 24 99-122 22-45 (247)
311 3clv_A RAB5 protein, putative; 96.1 0.0023 8E-08 55.2 2.4 22 100-121 9-30 (208)
312 1uj2_A Uridine-cytidine kinase 96.1 0.0026 8.8E-08 58.6 2.8 25 99-123 23-47 (252)
313 2lkc_A Translation initiation 96.0 0.0024 8.4E-08 54.2 2.4 25 97-121 7-31 (178)
314 2cxx_A Probable GTP-binding pr 96.0 0.0021 7.2E-08 55.2 2.0 22 100-121 3-24 (190)
315 3bc1_A RAS-related protein RAB 96.0 0.0025 8.4E-08 54.7 2.4 22 100-121 13-34 (195)
316 2oil_A CATX-8, RAS-related pro 96.0 0.0024 8.4E-08 55.3 2.4 22 100-121 27-48 (193)
317 1upt_A ARL1, ADP-ribosylation 96.0 0.0025 8.6E-08 53.7 2.4 22 99-120 8-29 (171)
318 2y8e_A RAB-protein 6, GH09086P 96.0 0.0025 8.6E-08 54.0 2.4 22 100-121 16-37 (179)
319 1sky_E F1-ATPase, F1-ATP synth 96.0 0.0027 9.1E-08 64.4 2.8 43 88-131 142-185 (473)
320 1ko7_A HPR kinase/phosphatase; 96.0 0.0014 4.9E-08 63.0 0.8 33 87-120 134-166 (314)
321 1r8s_A ADP-ribosylation factor 96.0 0.0027 9.1E-08 53.2 2.4 21 101-121 3-23 (164)
322 2grj_A Dephospho-COA kinase; T 96.0 0.0026 9E-08 56.6 2.4 25 97-121 11-35 (192)
323 1fzq_A ADP-ribosylation factor 96.0 0.0018 6.1E-08 56.1 1.3 23 99-121 17-39 (181)
324 1jal_A YCHF protein; nucleotid 96.0 0.0027 9.3E-08 62.3 2.7 23 98-120 2-24 (363)
325 2qby_A CDC6 homolog 1, cell di 96.0 0.0027 9.2E-08 60.9 2.7 28 96-123 43-70 (386)
326 2v3c_C SRP54, signal recogniti 96.0 0.0038 1.3E-07 62.7 3.8 43 93-135 92-137 (432)
327 3t1o_A Gliding protein MGLA; G 96.0 0.0027 9.2E-08 54.7 2.4 24 100-123 16-39 (198)
328 3tw8_B RAS-related protein RAB 96.0 0.0018 6E-08 55.1 1.1 22 100-121 11-32 (181)
329 1v5w_A DMC1, meiotic recombina 96.0 0.003 1E-07 61.3 2.8 29 94-122 118-146 (343)
330 3tlx_A Adenylate kinase 2; str 95.9 0.0032 1.1E-07 57.9 2.8 26 97-122 28-53 (243)
331 2z43_A DNA repair and recombin 95.9 0.0029 1E-07 60.7 2.7 30 94-123 103-132 (324)
332 2a9k_A RAS-related protein RAL 95.9 0.0029 9.9E-08 54.0 2.4 22 100-121 20-41 (187)
333 1z0f_A RAB14, member RAS oncog 95.9 0.0029 1E-07 53.6 2.4 23 100-122 17-39 (179)
334 2g6b_A RAS-related protein RAB 95.9 0.0029 1E-07 53.8 2.4 22 100-121 12-33 (180)
335 2hxs_A RAB-26, RAS-related pro 95.9 0.0028 9.6E-08 53.8 2.3 22 100-121 8-29 (178)
336 3con_A GTPase NRAS; structural 95.9 0.0029 1E-07 54.6 2.4 22 100-121 23-44 (190)
337 1moz_A ARL1, ADP-ribosylation 95.9 0.0016 5.4E-08 55.8 0.5 24 97-120 17-40 (183)
338 2bme_A RAB4A, RAS-related prot 95.9 0.0031 1.1E-07 54.1 2.4 23 99-121 11-33 (186)
339 4edh_A DTMP kinase, thymidylat 95.9 0.004 1.4E-07 56.4 3.2 31 96-126 4-34 (213)
340 2efe_B Small GTP-binding prote 95.9 0.0032 1.1E-07 53.6 2.4 22 100-121 14-35 (181)
341 1ypw_A Transitional endoplasmi 95.9 0.0028 9.6E-08 68.5 2.4 43 92-135 505-547 (806)
342 1nrj_B SR-beta, signal recogni 95.8 0.0035 1.2E-07 55.5 2.6 23 100-122 14-36 (218)
343 2bov_A RAla, RAS-related prote 95.8 0.0033 1.1E-07 54.8 2.4 22 100-121 16-37 (206)
344 2dby_A GTP-binding protein; GD 95.8 0.0031 1.1E-07 61.9 2.4 23 100-122 3-25 (368)
345 3ihw_A Centg3; RAS, centaurin, 95.8 0.0034 1.2E-07 54.6 2.4 22 100-121 22-43 (184)
346 2gf0_A GTP-binding protein DI- 95.8 0.0034 1.2E-07 54.4 2.4 22 100-121 10-31 (199)
347 2xb4_A Adenylate kinase; ATP-b 95.8 0.0034 1.2E-07 56.7 2.4 23 100-122 2-24 (223)
348 1u94_A RECA protein, recombina 95.8 0.0053 1.8E-07 60.0 4.0 38 95-132 60-99 (356)
349 2f6r_A COA synthase, bifunctio 95.8 0.0038 1.3E-07 58.8 2.8 24 97-120 74-97 (281)
350 1wf3_A GTP-binding protein; GT 95.8 0.0032 1.1E-07 60.0 2.3 25 96-121 6-30 (301)
351 1vg8_A RAS-related protein RAB 95.8 0.0035 1.2E-07 54.8 2.4 23 100-122 10-32 (207)
352 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0035 1.2E-07 54.0 2.4 22 100-121 9-30 (184)
353 2gf9_A RAS-related protein RAB 95.8 0.0036 1.2E-07 54.2 2.4 22 100-121 24-45 (189)
354 2fg5_A RAB-22B, RAS-related pr 95.8 0.0036 1.2E-07 54.5 2.4 23 100-122 25-47 (192)
355 3b9p_A CG5977-PA, isoform A; A 95.8 0.0038 1.3E-07 58.4 2.7 27 97-123 53-79 (297)
356 3tkl_A RAS-related protein RAB 95.8 0.0037 1.2E-07 54.1 2.4 22 100-121 18-39 (196)
357 3t5d_A Septin-7; GTP-binding p 95.8 0.0024 8.2E-08 59.6 1.2 23 100-122 10-32 (274)
358 2r62_A Cell division protease 95.8 0.0026 8.8E-08 58.7 1.4 33 88-122 36-68 (268)
359 3iby_A Ferrous iron transport 95.8 0.0034 1.2E-07 58.3 2.3 23 100-122 3-25 (256)
360 3kkq_A RAS-related protein M-R 95.8 0.0038 1.3E-07 53.4 2.4 22 100-121 20-41 (183)
361 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0039 1.3E-07 53.2 2.4 22 100-121 7-28 (186)
362 2wsm_A Hydrogenase expression/ 95.7 0.0041 1.4E-07 55.3 2.6 24 100-123 32-55 (221)
363 2xtp_A GTPase IMAP family memb 95.7 0.0036 1.2E-07 57.5 2.2 23 100-122 24-46 (260)
364 3v9p_A DTMP kinase, thymidylat 95.7 0.0043 1.5E-07 56.8 2.7 28 96-123 23-50 (227)
365 3oes_A GTPase rhebl1; small GT 95.7 0.0039 1.4E-07 54.6 2.4 26 97-122 23-48 (201)
366 1l8q_A Chromosomal replication 95.7 0.0049 1.7E-07 58.6 3.2 27 97-123 36-62 (324)
367 3lv8_A DTMP kinase, thymidylat 95.7 0.0043 1.5E-07 57.2 2.6 28 97-124 26-53 (236)
368 3t5g_A GTP-binding protein RHE 95.7 0.0042 1.4E-07 53.1 2.4 21 100-120 8-28 (181)
369 1jbk_A CLPB protein; beta barr 95.7 0.0049 1.7E-07 52.5 2.8 26 98-123 43-68 (195)
370 1e4v_A Adenylate kinase; trans 95.7 0.0042 1.4E-07 55.5 2.4 23 100-122 2-24 (214)
371 1z06_A RAS-related protein RAB 95.7 0.0042 1.4E-07 53.7 2.4 22 100-121 22-43 (189)
372 3iev_A GTP-binding protein ERA 95.7 0.0045 1.5E-07 59.0 2.7 23 99-121 11-33 (308)
373 3dz8_A RAS-related protein RAB 95.7 0.0042 1.4E-07 53.9 2.4 23 100-122 25-47 (191)
374 3d3q_A TRNA delta(2)-isopenten 95.7 0.0045 1.6E-07 60.2 2.8 25 99-123 8-32 (340)
375 4tmk_A Protein (thymidylate ki 95.7 0.0046 1.6E-07 56.0 2.6 30 97-126 2-31 (213)
376 2h92_A Cytidylate kinase; ross 95.7 0.0043 1.5E-07 55.3 2.4 25 98-122 3-27 (219)
377 2cjw_A GTP-binding protein GEM 95.7 0.0044 1.5E-07 54.3 2.4 22 100-121 8-29 (192)
378 2iwr_A Centaurin gamma 1; ANK 95.6 0.0066 2.2E-07 51.7 3.4 22 100-121 9-30 (178)
379 3bwd_D RAC-like GTP-binding pr 95.6 0.0045 1.5E-07 52.7 2.4 21 100-120 10-30 (182)
380 2a5j_A RAS-related protein RAB 95.6 0.0045 1.5E-07 53.7 2.4 22 100-121 23-44 (191)
381 2bcg_Y Protein YP2, GTP-bindin 95.6 0.0045 1.5E-07 54.3 2.4 22 100-121 10-31 (206)
382 3be4_A Adenylate kinase; malar 95.6 0.0051 1.8E-07 55.1 2.8 25 98-122 5-29 (217)
383 2fv8_A H6, RHO-related GTP-bin 95.6 0.0048 1.7E-07 54.4 2.6 34 88-121 15-48 (207)
384 2ew1_A RAS-related protein RAB 95.6 0.0046 1.6E-07 54.8 2.4 22 100-121 28-49 (201)
385 2qmh_A HPR kinase/phosphorylas 95.6 0.0052 1.8E-07 55.4 2.7 33 87-120 24-56 (205)
386 3a8t_A Adenylate isopentenyltr 95.6 0.0052 1.8E-07 59.7 2.9 26 97-122 39-64 (339)
387 1ltq_A Polynucleotide kinase; 95.6 0.005 1.7E-07 57.7 2.7 22 99-120 3-24 (301)
388 3reg_A RHO-like small GTPase; 95.6 0.0049 1.7E-07 53.5 2.4 22 100-121 25-46 (194)
389 1ksh_A ARF-like protein 2; sma 95.6 0.0037 1.3E-07 53.8 1.6 25 97-121 17-41 (186)
390 1x3s_A RAS-related protein RAB 95.6 0.005 1.7E-07 53.1 2.4 23 99-121 16-38 (195)
391 2h17_A ADP-ribosylation factor 95.6 0.0044 1.5E-07 53.3 2.0 22 100-121 23-44 (181)
392 1zd9_A ADP-ribosylation factor 95.6 0.005 1.7E-07 53.4 2.4 25 97-121 21-45 (188)
393 3cph_A RAS-related protein SEC 95.6 0.0049 1.7E-07 54.1 2.4 23 99-121 21-43 (213)
394 1jwy_B Dynamin A GTPase domain 95.6 0.0046 1.6E-07 58.4 2.3 23 100-122 26-48 (315)
395 2atv_A RERG, RAS-like estrogen 95.6 0.005 1.7E-07 53.7 2.4 23 99-121 29-51 (196)
396 1zbd_A Rabphilin-3A; G protein 95.6 0.0045 1.5E-07 54.1 2.1 22 100-121 10-31 (203)
397 3i8s_A Ferrous iron transport 95.5 0.0047 1.6E-07 57.8 2.3 23 100-122 5-27 (274)
398 2p5s_A RAS and EF-hand domain 95.5 0.0051 1.7E-07 53.8 2.4 24 98-121 28-51 (199)
399 4dhe_A Probable GTP-binding pr 95.5 0.0023 7.8E-08 56.9 0.1 24 99-122 30-53 (223)
400 3cbq_A GTP-binding protein REM 95.5 0.0028 9.5E-08 55.7 0.6 22 100-121 25-46 (195)
401 1zj6_A ADP-ribosylation factor 95.5 0.0047 1.6E-07 53.3 2.1 22 99-120 17-38 (187)
402 3a1s_A Iron(II) transport prot 95.5 0.0051 1.8E-07 57.1 2.3 23 100-122 7-29 (258)
403 2o52_A RAS-related protein RAB 95.5 0.0046 1.6E-07 54.3 1.9 22 100-121 27-48 (200)
404 1gwn_A RHO-related GTP-binding 95.5 0.0056 1.9E-07 54.3 2.4 22 100-121 30-51 (205)
405 3exa_A TRNA delta(2)-isopenten 95.4 0.0061 2.1E-07 58.7 2.7 25 98-122 3-27 (322)
406 1ak2_A Adenylate kinase isoenz 95.4 0.0063 2.2E-07 55.2 2.6 26 97-122 15-40 (233)
407 3umf_A Adenylate kinase; rossm 95.4 0.0075 2.6E-07 54.8 3.1 32 92-123 23-54 (217)
408 3c5c_A RAS-like protein 12; GD 95.4 0.0061 2.1E-07 52.9 2.4 22 100-121 23-44 (187)
409 3h4m_A Proteasome-activating n 95.4 0.0073 2.5E-07 56.0 3.0 27 97-123 50-76 (285)
410 2p65_A Hypothetical protein PF 95.4 0.0065 2.2E-07 51.7 2.5 26 98-123 43-68 (187)
411 2qu8_A Putative nucleolar GTP- 95.4 0.0049 1.7E-07 55.4 1.8 23 99-121 30-52 (228)
412 2fu5_C RAS-related protein RAB 95.4 0.0041 1.4E-07 53.2 1.2 22 100-121 10-31 (183)
413 2gco_A H9, RHO-related GTP-bin 95.4 0.0063 2.1E-07 53.4 2.4 22 100-121 27-48 (201)
414 2fh5_B SR-beta, signal recogni 95.4 0.0068 2.3E-07 53.5 2.6 22 100-121 9-30 (214)
415 3zvl_A Bifunctional polynucleo 95.4 0.0067 2.3E-07 60.3 2.8 28 94-121 254-281 (416)
416 2il1_A RAB12; G-protein, GDP, 95.4 0.0041 1.4E-07 54.2 1.1 22 100-121 28-49 (192)
417 2h57_A ADP-ribosylation factor 95.3 0.0036 1.2E-07 54.2 0.6 23 100-122 23-45 (190)
418 2ocp_A DGK, deoxyguanosine kin 95.3 0.0073 2.5E-07 55.0 2.7 26 97-122 1-26 (241)
419 3ld9_A DTMP kinase, thymidylat 95.3 0.0085 2.9E-07 54.7 3.1 31 96-126 19-50 (223)
420 3tmk_A Thymidylate kinase; pho 95.3 0.0082 2.8E-07 54.5 3.0 29 96-124 3-31 (216)
421 2atx_A Small GTP binding prote 95.3 0.0069 2.3E-07 52.5 2.4 22 100-121 20-41 (194)
422 1h65_A Chloroplast outer envel 95.3 0.0063 2.2E-07 56.5 2.3 23 100-122 41-63 (270)
423 2aka_B Dynamin-1; fusion prote 95.3 0.0064 2.2E-07 56.7 2.3 23 100-122 28-50 (299)
424 3crm_A TRNA delta(2)-isopenten 95.3 0.0072 2.5E-07 58.3 2.7 24 99-122 6-29 (323)
425 2j1l_A RHO-related GTP-binding 95.3 0.0059 2E-07 54.3 1.9 21 100-120 36-56 (214)
426 3def_A T7I23.11 protein; chlor 95.3 0.0066 2.3E-07 56.2 2.3 23 100-122 38-60 (262)
427 3llu_A RAS-related GTP-binding 95.3 0.0061 2.1E-07 53.3 1.9 22 100-121 22-43 (196)
428 2f7s_A C25KG, RAS-related prot 95.3 0.006 2E-07 54.0 1.9 22 100-121 27-48 (217)
429 2q3h_A RAS homolog gene family 95.3 0.006 2.1E-07 53.2 1.9 24 98-121 20-43 (201)
430 2hf9_A Probable hydrogenase ni 95.2 0.0077 2.6E-07 53.7 2.6 24 100-123 40-63 (226)
431 4bas_A ADP-ribosylation factor 95.2 0.0051 1.7E-07 53.3 1.4 24 98-121 17-40 (199)
432 1njg_A DNA polymerase III subu 95.2 0.0083 2.8E-07 52.9 2.8 24 100-123 47-70 (250)
433 2yc2_C IFT27, small RAB-relate 95.2 0.004 1.4E-07 54.3 0.6 23 99-121 21-43 (208)
434 3dm5_A SRP54, signal recogniti 95.1 0.014 4.6E-07 58.8 4.3 39 97-135 99-138 (443)
435 3cnl_A YLQF, putative uncharac 95.1 0.0073 2.5E-07 56.3 2.2 25 99-123 100-124 (262)
436 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.011 3.7E-07 53.9 3.1 24 100-123 41-64 (262)
437 1sxj_D Activator 1 41 kDa subu 95.1 0.0042 1.4E-07 59.2 0.3 24 100-123 60-83 (353)
438 2hup_A RAS-related protein RAB 95.1 0.009 3.1E-07 52.5 2.4 22 100-121 31-52 (201)
439 2b6h_A ADP-ribosylation factor 95.0 0.0061 2.1E-07 53.2 1.1 24 97-120 28-51 (192)
440 3foz_A TRNA delta(2)-isopenten 95.0 0.01 3.6E-07 56.9 2.9 25 98-122 10-34 (316)
441 4gzl_A RAS-related C3 botulinu 95.0 0.0094 3.2E-07 52.5 2.4 23 99-121 31-53 (204)
442 3cpj_B GTP-binding protein YPT 95.0 0.0097 3.3E-07 53.1 2.4 22 100-121 15-36 (223)
443 2z4s_A Chromosomal replication 94.9 0.01 3.5E-07 59.5 2.6 26 98-123 130-155 (440)
444 2orw_A Thymidine kinase; TMTK, 94.9 0.016 5.4E-07 51.0 3.6 25 97-121 2-27 (184)
445 3bh0_A DNAB-like replicative h 94.9 0.0094 3.2E-07 57.0 2.3 37 87-123 57-93 (315)
446 3n70_A Transport activator; si 94.9 0.017 5.8E-07 48.3 3.6 26 98-123 24-49 (145)
447 1p5z_B DCK, deoxycytidine kina 94.9 0.006 2.1E-07 56.4 0.7 27 96-122 22-48 (263)
448 3tqf_A HPR(Ser) kinase; transf 94.9 0.012 4.2E-07 51.8 2.6 32 88-120 7-38 (181)
449 3q3j_B RHO-related GTP-binding 94.8 0.011 3.8E-07 52.6 2.4 22 100-121 29-50 (214)
450 2g3y_A GTP-binding protein GEM 94.8 0.0094 3.2E-07 53.6 1.9 22 100-121 39-60 (211)
451 4dcu_A GTP-binding protein ENG 94.8 0.0072 2.5E-07 60.7 1.1 22 100-121 25-46 (456)
452 4djt_A GTP-binding nuclear pro 94.8 0.0039 1.3E-07 55.2 -0.8 22 100-121 13-34 (218)
453 2i1q_A DNA repair and recombin 94.8 0.0092 3.2E-07 56.9 1.8 28 94-121 94-121 (322)
454 2x77_A ADP-ribosylation factor 94.7 0.009 3.1E-07 51.5 1.5 23 97-119 21-43 (189)
455 2j0v_A RAC-like GTP-binding pr 94.7 0.021 7.1E-07 50.2 3.8 24 98-121 9-32 (212)
456 3p32_A Probable GTPase RV1496/ 94.7 0.023 8E-07 55.1 4.5 36 97-132 78-114 (355)
457 3eph_A TRNA isopentenyltransfe 94.6 0.014 4.9E-07 58.0 2.7 25 99-123 3-27 (409)
458 1m8p_A Sulfate adenylyltransfe 94.5 0.017 5.9E-07 60.0 3.2 38 96-133 394-434 (573)
459 2v1u_A Cell division control p 94.5 0.017 5.8E-07 55.3 2.9 28 96-123 42-69 (387)
460 1puj_A YLQF, conserved hypothe 94.5 0.016 5.6E-07 54.5 2.7 25 98-122 120-144 (282)
461 4hlc_A DTMP kinase, thymidylat 94.4 0.025 8.5E-07 50.7 3.7 26 98-123 2-27 (205)
462 3syl_A Protein CBBX; photosynt 94.4 0.018 6.2E-07 53.9 3.0 27 97-123 66-92 (309)
463 3th5_A RAS-related C3 botulinu 93.4 0.0071 2.4E-07 53.0 0.0 22 99-120 31-52 (204)
464 3l0i_B RAS-related protein RAB 94.4 0.0046 1.6E-07 54.1 -1.2 22 99-120 34-55 (199)
465 2chg_A Replication factor C sm 94.4 0.018 6.1E-07 50.2 2.6 23 101-123 41-63 (226)
466 3sr0_A Adenylate kinase; phosp 94.3 0.02 6.8E-07 51.5 2.8 24 100-123 2-25 (206)
467 3gj0_A GTP-binding nuclear pro 94.3 0.012 4.2E-07 52.2 1.3 23 100-122 17-40 (221)
468 1x6v_B Bifunctional 3'-phospho 94.3 0.019 6.6E-07 60.2 2.9 38 97-134 51-90 (630)
469 3r7w_A Gtpase1, GTP-binding pr 94.1 0.022 7.5E-07 54.1 2.7 25 97-121 2-26 (307)
470 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.036 1.2E-06 53.0 4.2 39 97-135 44-82 (322)
471 3ec1_A YQEH GTPase; atnos1, at 94.1 0.017 6E-07 56.5 2.1 26 98-123 162-187 (369)
472 2zts_A Putative uncharacterize 94.1 0.015 5.3E-07 52.2 1.5 25 95-119 27-51 (251)
473 3uk6_A RUVB-like 2; hexameric 94.1 0.028 9.5E-07 54.0 3.4 37 97-133 69-106 (368)
474 2q6t_A DNAB replication FORK h 94.1 0.028 9.6E-07 56.2 3.5 44 88-131 190-235 (444)
475 1d2n_A N-ethylmaleimide-sensit 94.0 0.027 9.2E-07 52.0 3.2 27 96-122 62-88 (272)
476 3h2y_A GTPase family protein; 94.0 0.019 6.5E-07 56.2 2.1 27 97-123 159-185 (368)
477 3hws_A ATP-dependent CLP prote 93.9 0.024 8.2E-07 54.8 2.7 26 98-123 51-76 (363)
478 1ofh_A ATP-dependent HSL prote 93.8 0.026 8.9E-07 52.5 2.7 25 99-123 51-75 (310)
479 3geh_A MNME, tRNA modification 93.8 0.025 8.5E-07 57.2 2.6 26 97-122 223-248 (462)
480 1e9r_A Conjugal transfer prote 93.7 0.037 1.3E-06 54.8 3.8 35 88-122 42-77 (437)
481 1wxq_A GTP-binding protein; st 93.7 0.021 7.1E-07 56.6 1.9 22 100-121 2-23 (397)
482 3t15_A Ribulose bisphosphate c 93.7 0.033 1.1E-06 52.4 3.1 23 100-122 38-60 (293)
483 2x2e_A Dynamin-1; nitration, h 93.6 0.016 5.4E-07 56.2 0.8 23 100-122 33-55 (353)
484 2hjg_A GTP-binding protein ENG 93.6 0.018 6.1E-07 57.5 1.1 22 100-121 5-26 (436)
485 2qpt_A EH domain-containing pr 93.6 0.026 8.8E-07 58.3 2.3 23 99-121 66-88 (550)
486 1g8f_A Sulfate adenylyltransfe 93.5 0.03 1E-06 57.3 2.7 31 96-126 393-424 (511)
487 1xp8_A RECA protein, recombina 93.5 0.029 9.9E-07 54.9 2.5 39 94-132 70-109 (366)
488 3gmt_A Adenylate kinase; ssgci 93.5 0.031 1.1E-06 51.3 2.4 23 100-122 10-32 (230)
489 2j37_W Signal recognition part 93.5 0.056 1.9E-06 55.2 4.5 35 96-130 99-134 (504)
490 2qby_B CDC6 homolog 3, cell di 93.3 0.038 1.3E-06 53.1 3.0 26 98-123 45-70 (384)
491 2qgz_A Helicase loader, putati 93.3 0.037 1.3E-06 52.7 2.8 26 98-123 152-177 (308)
492 4b4t_K 26S protease regulatory 93.3 0.032 1.1E-06 55.8 2.5 34 88-123 198-231 (428)
493 1tue_A Replication protein E1; 93.3 0.039 1.3E-06 49.9 2.7 28 95-122 55-82 (212)
494 3d8b_A Fidgetin-like protein 1 93.2 0.039 1.3E-06 53.5 2.8 27 97-123 116-142 (357)
495 4b4t_L 26S protease subunit RP 93.2 0.035 1.2E-06 55.7 2.5 34 88-123 207-240 (437)
496 3pvs_A Replication-associated 93.2 0.038 1.3E-06 55.5 2.7 24 100-123 52-75 (447)
497 3eie_A Vacuolar protein sortin 93.2 0.04 1.4E-06 52.4 2.8 26 98-123 51-76 (322)
498 1f5n_A Interferon-induced guan 93.2 0.034 1.1E-06 57.9 2.4 26 97-122 37-62 (592)
499 2b8t_A Thymidine kinase; deoxy 93.1 0.058 2E-06 49.1 3.7 28 96-123 10-37 (223)
500 4b4t_M 26S protease regulatory 93.1 0.037 1.3E-06 55.4 2.5 34 88-123 207-240 (434)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.7e-52 Score=410.41 Aligned_cols=225 Identities=15% Similarity=0.119 Sum_probs=187.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
..++|+++||+++|+.+...+ .+|+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~--~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~-- 96 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTI--QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS-- 96 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCC--
T ss_pred CCceEEEEeEEEEeCCCCCCe--EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC--
Confidence 456899999999997543222 16999999999999999999999999999999999999 8999999999875432
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+...+|+ .||||||++.+|+.+||++|+.+.....+. .....+++.++++.+||.+..+ ++|.+|||||||
T Consensus 97 ----~~~~~~~r~-~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqkQ 170 (366)
T 3tui_C 97 ----ESELTKARR-QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQ 170 (366)
T ss_dssp ----HHHHHHHHT-TEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-CCTTTSCHHHHH
T ss_pred ----HHHHHHHhC-cEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHH
Confidence 233444564 899999999999999999999876433221 1122356788999999987654 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +.++||+|++|++ +..+
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~--~~~g~Tii~vTHdl~~--~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN--RRLGLTILLITHEMDV--VKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHSCCEEEEEESCHHH--HHHHCSEEEEEETTEEEECC
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH--HhCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999 999999999999999983 4569999999996666 9999999999987 5667
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
++.+++.
T Consensus 247 ~~~ev~~ 253 (366)
T 3tui_C 247 TVSEVFS 253 (366)
T ss_dssp BHHHHHS
T ss_pred CHHHHHh
Confidence 7777774
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7.6e-51 Score=404.58 Aligned_cols=214 Identities=14% Similarity=0.095 Sum_probs=181.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++||+|+|++. . +|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 3 ~l~~~~l~~~yg~~--~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~---- 72 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV--V----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP---- 72 (381)
T ss_dssp CEEEEEEEEEETTE--E----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG----
T ss_pred EEEEEeEEEEECCE--E----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH----
Confidence 57899999999543 2 6999999999999999999999999999999999999 89999999998754332
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-CccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.||||||++.+|+++||.||+.+.....+. ....++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 73 -------~~-r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~p~~LSGGqrQRVa 143 (381)
T 3rlf_A 73 -------AE-RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVA 143 (381)
T ss_dssp -------GG-SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-CCGGGSCHHHHHHHH
T ss_pred -------HH-CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhHCCHHHHHHHH
Confidence 12 3799999999999999999999876533221 1122356788999999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||+|++|++ +..+++.
T Consensus 144 iArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~--~~~g~tii~vTHd~~e--a~~~aDri~vl~~G~i~~~g~~~ 219 (381)
T 3rlf_A 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH--KRLGRTMIYVTHDQVE--AMTLADKIVVLDAGRVAQVGKPL 219 (381)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHHCCEEEEECSCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HhCCCEEEEEECCHHH--HHHhCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999 999999999999999983 4559999999995555 9999999999987 4556666
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 220 ~l~~~ 224 (381)
T 3rlf_A 220 ELYHY 224 (381)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 66643
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.2e-51 Score=402.56 Aligned_cols=218 Identities=14% Similarity=0.090 Sum_probs=179.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++||+|+|++. . +|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.+....
T Consensus 4 ~l~i~~ls~~y~~~--~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~--- 74 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT--P----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN--- 74 (359)
T ss_dssp CEEEEEEEEEETTE--E----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCB---
T ss_pred EEEEEeEEEEECCE--E----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccc---
Confidence 68999999999543 2 6999999999999999999999999999999999999 899999999976321110
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
....+ +.||||||++.+|+++||++|+.+...... .....++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 75 ----~~~~~-r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRVa 148 (359)
T 3fvq_A 75 ----LPVRE-RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-RYPHELSGGQQQRAA 148 (359)
T ss_dssp ----CCGGG-SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-SCGGGSCHHHHHHHH
T ss_pred ----cchhh-CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHH
Confidence 01122 489999999999999999999976532211 11122356788999999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|.++. ++.|+|+|+||||++. +..+||+|++|++ +..+++.
T Consensus 149 lArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~--~~~g~tvi~vTHd~~e--a~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 149 LARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL--RANGKSAVFVSHDREE--ALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHTTCEEEEECCCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHHCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999 999999999999888873 5579999999996555 9999999999987 5556666
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 225 el~~~ 229 (359)
T 3fvq_A 225 ELYRQ 229 (359)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 66643
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.5e-50 Score=376.53 Aligned_cols=212 Identities=19% Similarity=0.201 Sum_probs=172.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++||+++|+.+.... ++|+|+||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 1 ~l~~~~l~~~y~~~~~~~--~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~----- 73 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEII--YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLD----- 73 (235)
T ss_dssp CEEEEEEEEEEEETTEEE--EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC-----
T ss_pred CEEEEEEEEEeCCCCcce--eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCC-----
Confidence 467899999997543211 15999999999999999999999999999999999999 8999999999875432
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-Cc---cccccccccCccccccccccccccCCCccceee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GV---HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~---~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
..+....|++.+||+||++.+|+.+||.+|+.+....... .. ...+++.++++.+++.+...+++|.+|||||||
T Consensus 74 -~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~Q 152 (235)
T 3tif_A 74 -DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ 152 (235)
T ss_dssp -HHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHH
T ss_pred -HHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHH
Confidence 2233334444799999999999999999999875422111 11 123456678889999865435999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. + .+||++++|++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~~g~tvi~vtHd~~~--~-~~~d~i~~l~~ 220 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN--EEDGKTVVVVTHDINV--A-RFGERIIYLKD 220 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHHCCEEEEECSCHHH--H-TTSSEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HHcCCEEEEEcCCHHH--H-HhCCEEEEEEC
Confidence 9999999999999999999 999999999999999983 3459999999997654 5 68999999976
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.5e-49 Score=380.56 Aligned_cols=219 Identities=16% Similarity=0.108 Sum_probs=178.9
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++|+++||+++|+++. . +|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 5 ~~~l~i~~ls~~y~~~~-~----~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~---- 75 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGT-H----ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYS---- 75 (275)
T ss_dssp CEEEEEEEEEEECTTSC-E----EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCS----
T ss_pred CcEEEEEEEEEEECCCC-e----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcc----
Confidence 35799999999996543 2 5999999999999999999999999999999999999 899999999976311
Q ss_pred eehhhhhhhHhhhccceeeEeC--CCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCcccee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDS--RGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
......+|+ .+||+||++ .+| .+||++|+.+.....+.. ....+++.++++.+||.+... ++|.+||||||
T Consensus 76 ---~~~~~~~~~-~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqk 149 (275)
T 3gfo_A 76 ---RKGIMKLRE-SIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-KPTHCLSFGQK 149 (275)
T ss_dssp ---HHHHHHHHH-SEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHH
T ss_pred ---cccHHHHhC-cEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHH
Confidence 112233454 899999986 345 589999998764322111 112356778899999987654 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccc
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGV 293 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~ 293 (382)
|||+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+||+|++|++ +..
T Consensus 150 QRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~--~~~g~tvi~vtHdl~~--~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 150 KRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ--KELGITIIIATHDIDI--VPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HHHCCEEEEEESCCSS--GGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH--hhCCCEEEEEecCHHH--HHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999 999999999999999982 2459999999997777 8899999999986 555
Q ss_pred ccccceee
Q 016817 294 SEISGVYD 301 (382)
Q Consensus 294 ~~~~~v~~ 301 (382)
+++.+++.
T Consensus 226 g~~~~~~~ 233 (275)
T 3gfo_A 226 GNPKEVFA 233 (275)
T ss_dssp ECHHHHTH
T ss_pred CCHHHHhc
Confidence 66656653
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.8e-49 Score=391.96 Aligned_cols=215 Identities=13% Similarity=0.043 Sum_probs=180.1
Q ss_pred CchhHHHHHhhhc-ccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 64 DGLNELRHKFLSY-RSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 64 ~~~i~i~nvs~~y-~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.++|+++|++++| ++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 12 ~~~l~~~~l~~~y~g~~~------vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~- 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGAR------SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP- 84 (355)
T ss_dssp CEEEEEEEEEECCTTSTT------CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-
T ss_pred CceEEEEEEEEEEcCCCE------EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh-
Confidence 4589999999999 5433 6999999999999999999999999999999999999 89999999997753221
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceee
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
.+ +.+|||||++.+|+++||+||+.+.....+.. ...++++.++++.++|.+..+ ++|.+|||||||
T Consensus 85 ----------~~-r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~Q 152 (355)
T 1z47_A 85 ----------QK-RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-RFPHELSGGQQQ 152 (355)
T ss_dssp ----------GG-SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHH
T ss_pred ----------hh-CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHH
Confidence 22 38999999999999999999998754322111 112356788999999987655 999999999999
Q ss_pred ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccc
Q 016817 221 RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVS 294 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~ 294 (382)
||+|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+
T Consensus 153 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--a~~~adri~vl~~G~i~~~g 228 (355)
T 1z47_A 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH--DEMGVTSVFVTHDQEE--ALEVADRVLVLHEGNVEQFG 228 (355)
T ss_dssp HHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH--HHHTCEEEEECSCHHH--HHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEECCCHHH--HHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999 999999999999999983 4458999999996555 8899999999987 4445
Q ss_pred cccceee
Q 016817 295 EISGVYD 301 (382)
Q Consensus 295 ~~~~v~~ 301 (382)
++.+++.
T Consensus 229 ~~~~l~~ 235 (355)
T 1z47_A 229 TPEEVYE 235 (355)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 5555654
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.3e-49 Score=392.35 Aligned_cols=214 Identities=14% Similarity=0.053 Sum_probs=179.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 3 ~l~~~~l~~~y~~~--~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---- 72 (362)
T 2it1_A 3 EIKLENIVKKFGNF--T----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP---- 72 (362)
T ss_dssp CEEEEEEEEESSSS--E----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG----
T ss_pred EEEEEeEEEEECCE--E----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH----
Confidence 57899999999543 2 5999999999999999999999999999999999999 89999999998754321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.+|||||++.+|+++||++|+.+.....+.. ...++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 73 -------~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRva 143 (362)
T 2it1_A 73 -------KD-RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-RYPWQLSGGQQQRVA 143 (362)
T ss_dssp -------GG-TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHH
T ss_pred -------hH-CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-CChhhCCHHHHHHHH
Confidence 12 37999999999999999999998754222111 112356788999999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++.
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--a~~~adri~vl~~G~i~~~g~~~ 219 (362)
T 2it1_A 144 IARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ--KELGITTVYVTHDQAE--ALAMADRIAVIREGEILQVGTPD 219 (362)
T ss_dssp HHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH--HHHTCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH--HhCCCEEEEECCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 4458999999996554 8899999999987 4455666
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 220 ~~~~~ 224 (362)
T 2it1_A 220 EVYYK 224 (362)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 66643
No 8
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-49 Score=392.71 Aligned_cols=214 Identities=12% Similarity=0.070 Sum_probs=178.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 3 ~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---- 72 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP---- 72 (359)
T ss_dssp CEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG----
T ss_pred EEEEEEEEEEECC--EE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh----
Confidence 5789999999953 22 5999999999999999999999999999999999999 89999999998754321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.+|||||++.+|+++||++|+.+.....+ .....++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 73 -------~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSgGq~QRva 143 (359)
T 2yyz_A 73 -------KY-REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD-RKPTQLSGGQQQRVA 143 (359)
T ss_dssp -------GG-TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHH
T ss_pred -------hh-CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHH
Confidence 12 379999999999999999999976432111 01112356778999999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++.
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--~~~~adri~vl~~G~i~~~g~~~ 219 (359)
T 2yyz_A 144 LARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ--QELGITSVYVTHDQAE--AMTMASRIAVFNQGKLVQYGTPD 219 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHHCCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEcCCHHH--HHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999 999999999999999983 4458999999996554 8899999999987 4445666
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 220 ~l~~~ 224 (359)
T 2yyz_A 220 EVYDS 224 (359)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 66643
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.7e-49 Score=378.41 Aligned_cols=220 Identities=16% Similarity=0.062 Sum_probs=181.2
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++. + +|+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 9 ~~~l~~~~l~~~~~~~--~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~-- 80 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQ--A----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP-- 80 (266)
T ss_dssp CCEEEEEEEEEEETTE--E----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH--
T ss_pred cceEEEEeEEEEeCCe--e----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH--
Confidence 3589999999999643 3 5999999999999999999999999999999999999 89999999998754321
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
. ..+ +.+||++|++.+++.+||.+|+.+..... ......+++.++++.+++.+..+ +++.+|||||||||
T Consensus 81 ----~---~~~-~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~QRv 150 (266)
T 4g1u_C 81 ----K---ALA-RTRAVMRQYSELAFPFSVSEVIQMGRAPY-GGSQDRQALQQVMAQTDCLALAQ-RDYRVLSGGEQQRV 150 (266)
T ss_dssp ----H---HHH-HHEEEECSCCCCCSCCBHHHHHHGGGTTS-CSTTHHHHHHHHHHHTTCSTTTT-SBGGGCCHHHHHHH
T ss_pred ----H---HHh-heEEEEecCCccCCCCCHHHHHHhhhhhc-CcHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHH
Confidence 1 133 37999999998877899999997643221 12223356778899999987654 99999999999999
Q ss_pred ceeeeehh------HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---
Q 016817 223 DFAMVVSN------IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--- 290 (382)
Q Consensus 223 aIAraL~~------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--- 290 (382)
+|||||++ +|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+||++++|++
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~--~~~~~tvi~vtHdl~~--~~~~~d~v~vl~~G~i 226 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT--RQEPLAVCCVLHDLNL--AALYADRIMLLAQGKL 226 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH--HHSSEEEEEECSCHHH--HHHHCSEEEEEETTEE
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH--HcCCCEEEEEEcCHHH--HHHhCCEEEEEECCEE
Confidence 99999999 999999999 999999999999999983 4446799999996665 8899999999987
Q ss_pred cccccccceeeEEEe
Q 016817 291 LGVSEISGVYDIVCL 305 (382)
Q Consensus 291 ~~~~~~~~v~~~~~l 305 (382)
+..++++++++.+.+
T Consensus 227 ~~~g~~~~~~~~~~l 241 (266)
T 4g1u_C 227 VACGTPEEVLNAETL 241 (266)
T ss_dssp EEEECHHHHCCHHHH
T ss_pred EEEcCHHHHhCcHHH
Confidence 555666666654433
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.5e-49 Score=365.78 Aligned_cols=207 Identities=15% Similarity=0.075 Sum_probs=171.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+
T Consensus 3 ~~l~~~~l~~~y~~--~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---- 72 (224)
T 2pcj_A 3 EILRAENIKKVIRG--YE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTN---- 72 (224)
T ss_dssp EEEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSC----
T ss_pred cEEEEEeEEEEECC--Ee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCC----
Confidence 47899999999964 22 5999999999999999999999999999999999999 8999999999764322
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeec
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+...+|++.+||+||++.+|+.+|+.||+.+.....+.. ....+++.++++.+++.+... ++|.+|||||||||
T Consensus 73 --~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 73 --EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-RKPYELSGGEQQRV 149 (224)
T ss_dssp --HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHH
T ss_pred --HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHH
Confidence 11222234347999999999999999999997654222111 112345778899999987655 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+.+.|+++. + +|+|||+||||++. + .+||++++|++
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~--~-~g~tvi~vtHd~~~--~-~~~d~v~~l~~ 214 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN--E-GGTSIVMVTHEREL--A-ELTHRTLEMKD 214 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--H-TTCEEEEECSCHHH--H-TTSSEEEEEET
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--H-CCCEEEEEcCCHHH--H-HhCCEEEEEEC
Confidence 99999999999999999 999999999999999983 3 48999999997654 6 68999998876
No 11
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.5e-49 Score=392.28 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=172.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+.
T Consensus 11 ~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---- 80 (372)
T 1v43_A 11 EVKLENLTKRFGN--FT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP---- 80 (372)
T ss_dssp CEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG----
T ss_pred eEEEEEEEEEECC--EE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh----
Confidence 5899999999954 22 5999999999999999999999999999999999999 89999999998753321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.+ +.+|||||++.+|+++||++|+.+.....+.. ...++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 81 -------~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRva 151 (372)
T 1v43_A 81 -------KD-RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSGGQRQRVA 151 (372)
T ss_dssp -------GG-GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-SCTTTCCSSCHHHHH
T ss_pred -------hh-CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHH
Confidence 12 37999999999999999999997643211111 112346778899999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|.|+|+||||++. +..+||++++|++ +..+++.
T Consensus 152 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--a~~~adri~vl~~G~i~~~g~~~ 227 (372)
T 1v43_A 152 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ--QKLKVTTIYVTHDQVE--AMTMGDRIAVMNRGQLLQIGSPT 227 (372)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HHHTCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999 999999999999999983 4458999999996554 8899999999987 4445666
Q ss_pred ceeeEE
Q 016817 298 GVYDIV 303 (382)
Q Consensus 298 ~v~~~~ 303 (382)
+++..+
T Consensus 228 ~l~~~p 233 (372)
T 1v43_A 228 EVYLRP 233 (372)
T ss_dssp HHHHCC
T ss_pred HHHhCc
Confidence 666443
No 12
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.2e-48 Score=385.58 Aligned_cols=210 Identities=15% Similarity=0.194 Sum_probs=176.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|++++|++++|++ . + |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.+.+
T Consensus 1 ml~~~~l~~~y~~--~-~----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~----- 68 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-S----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS----- 68 (348)
T ss_dssp CEEEEEEEEECSS--C-E----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----
T ss_pred CEEEEEEEEEECC--E-E----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc-----
Confidence 4678999999953 2 4 999999999999999999999999999999999999 8999999999765321
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
..+ +.+|||||++.+|+++||++|+.+.....+ ....+++.++++.++|.+..+ ++|.+|||||||||+|
T Consensus 69 ------~~~-r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~--~~~~~~v~~~l~~~~L~~~~~-~~~~~LSgGq~QRval 138 (348)
T 3d31_A 69 ------PEK-HDIAFVYQNYSLFPHMNVKKNLEFGMRMKK--IKDPKRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVAL 138 (348)
T ss_dssp ------HHH-HTCEEECTTCCCCTTSCHHHHHHHHHHHHC--CCCHHHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHH
T ss_pred ------hhh-CcEEEEecCcccCCCCCHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHH
Confidence 123 389999999999999999999987543221 111266788999999987655 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++.+
T Consensus 139 AraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~--~~~g~tii~vTHd~~~--~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH--KKNKLTVLHITHDQTE--ARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH--HHTTCEEEEEESCHHH--HHHHCSEEEEESSSCEEEEECHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999 999999999999999983 4569999999996554 8899999999987 34455555
Q ss_pred eee
Q 016817 299 VYD 301 (382)
Q Consensus 299 v~~ 301 (382)
++.
T Consensus 215 ~~~ 217 (348)
T 3d31_A 215 IFE 217 (348)
T ss_dssp HHS
T ss_pred HHh
Confidence 554
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.8e-49 Score=392.36 Aligned_cols=220 Identities=10% Similarity=0.082 Sum_probs=178.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.+.......
T Consensus 3 ~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred EEEEEeEEEEECC--EE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccC
Confidence 5789999999953 22 5999999999999999999999999999999999999 899999999876421000001
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.. .+ +.+|||||++.+|+++||++|+.+.....+.. ...++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 77 ~~-----~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRva 149 (372)
T 1g29_1 77 PP-----KD-RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-RKPRELSGGQRQRVA 149 (372)
T ss_dssp CG-----GG-SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-CCGGGSCHHHHHHHH
T ss_pred CH-----hH-CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CCcccCCHHHHHHHH
Confidence 11 12 37999999999999999999998754322111 112356778999999987655 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++.
T Consensus 150 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--a~~~adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ--RQLGVTTIYVTHDQVE--AMTMGDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH--HHHTCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHH--HhcCCEEEEECCCHHH--HHHhCCEEEEEeCCEEEEeCCHH
Confidence 9999999999999999 999999999999999983 4458999999996555 8899999999987 4455666
Q ss_pred ceeeE
Q 016817 298 GVYDI 302 (382)
Q Consensus 298 ~v~~~ 302 (382)
+++..
T Consensus 226 ~l~~~ 230 (372)
T 1g29_1 226 EVYDK 230 (372)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 66643
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.9e-49 Score=371.23 Aligned_cols=206 Identities=12% Similarity=0.028 Sum_probs=171.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 5 ~~~l~i~~l~~~y~~~--~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~-- 76 (257)
T 1g6h_A 5 MEILRTENIVKYFGEF--K----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP-- 76 (257)
T ss_dssp CEEEEEEEEEEEETTE--E----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH--
T ss_pred CcEEEEeeeEEEECCE--e----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--
Confidence 4579999999999542 2 5999999999999999999999999999999999999 89999999997643211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh--hh-----------cC-ccccccccccCccccccccccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW--MS-----------EG-VHHNQRCLRSDDCALMKNDAEI 208 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~--~~-----------~~-~~~~~~~~~~l~~~~L~~~~~~ 208 (382)
....|+ .+||+||++.+|+.+||.||+.+.... .+ .. ....+++.++++.+|+.+...
T Consensus 77 ------~~~~~~-~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~- 148 (257)
T 1g6h_A 77 ------AELYHY-GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD- 148 (257)
T ss_dssp ------HHHHHH-TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-
T ss_pred ------HHHHhC-CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC-
Confidence 111333 799999999999999999999764321 00 00 011245677899999986654
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
+++.+|||||||||+|||||+.+|++||||| +||+.++..++++|+++ +++|+|||+||||++. +..+||++
T Consensus 149 ~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l---~~~g~tvi~vtHd~~~--~~~~~d~v 223 (257)
T 1g6h_A 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL---KAKGITFLIIEHRLDI--VLNYIDHL 223 (257)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECSCCST--TGGGCSEE
T ss_pred CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEE
Confidence 9999999999999999999999999999999 99999999999999998 3348999999997766 88899999
Q ss_pred hhhhh
Q 016817 286 KICEY 290 (382)
Q Consensus 286 ~ll~~ 290 (382)
++|++
T Consensus 224 ~~l~~ 228 (257)
T 1g6h_A 224 YVMFN 228 (257)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99976
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.5e-49 Score=372.45 Aligned_cols=223 Identities=11% Similarity=0.065 Sum_probs=176.6
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc---cc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---SH 140 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~---~~ 140 (382)
++|+++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++... ..
T Consensus 5 ~~l~i~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG--HE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CCEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTS
T ss_pred ceEEEeeEEEEECC--EE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccc
Confidence 47999999999953 23 5999999999999999999999999999999999999 899999999876310 00
Q ss_pred -ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-hcC-ccccccccccCcccccccc-ccccccCCCcc
Q 016817 141 -TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-SEG-VHHNQRCLRSDDCALMKND-AEIDDLKSSPK 216 (382)
Q Consensus 141 -~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~-~~~~~~~~~~l~~~~L~~~-~~~~~~~~LSG 216 (382)
.......+...+|+ .+||+||++.+|+.+||.+|+.+..... +.. ....+++.++++.+|+.+. .. ++|.+|||
T Consensus 79 ~~~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSg 156 (262)
T 1b0u_A 79 QLKVADKNQLRLLRT-RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-KYPVHLSG 156 (262)
T ss_dssp SEEESCHHHHHHHHH-HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-SCGGGSCH
T ss_pred cccccChhhHHHHhc-ceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-CCcccCCH
Confidence 00011122223454 7999999999999999999998743111 111 1123457788999999866 54 99999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY--- 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~--- 290 (382)
||||||+|||||+.+|++||||| +||+.++..++++|+++ .++|+|||+||||++. +..+||++++|++
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l---~~~g~tvi~vtHd~~~--~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL---AEEGKTMVVVTHEMGF--ARHVSSHVIFLHQGKI 231 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH---HHTTCCEEEECSCHHH--HHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEECCEE
Confidence 99999999999999999999999 99999999999999998 3348999999996655 8889999999976
Q ss_pred ccccccccee
Q 016817 291 LGVSEISGVY 300 (382)
Q Consensus 291 ~~~~~~~~v~ 300 (382)
+..+++.+++
T Consensus 232 ~~~g~~~~~~ 241 (262)
T 1b0u_A 232 EEEGDPEQVF 241 (262)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 3344444444
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-48 Score=367.14 Aligned_cols=206 Identities=11% Similarity=0.064 Sum_probs=169.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 4 ~~~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-- 75 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA--IH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA-- 75 (240)
T ss_dssp SEEEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH--
T ss_pred CceEEEEeEEEEECC--ee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCH--
Confidence 357999999999964 23 5999999999999999999999999999999999999 89999999997643211
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccc-cccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCA-LMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~LSGGqkQR 221 (382)
.. .+++.+||+||++.+|+.+|+.||+.+............+.+.++++.+ ++.+... +++.+||||||||
T Consensus 76 ----~~---~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LSgGq~qr 147 (240)
T 1ji0_A 76 ----HV---INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK-QLGGTLSGGEQQM 147 (240)
T ss_dssp ----HH---HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT-SBSSSSCHHHHHH
T ss_pred ----HH---HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhc-CChhhCCHHHHHH
Confidence 11 2223699999999999989999999754211101111123456678888 4986655 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+++.|+++ .+.|+|||+||||++. +.++||++++|++
T Consensus 148 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~---~~~g~tvi~vtHd~~~--~~~~~d~v~~l~~ 214 (240)
T 1ji0_A 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI---NQEGTTILLVEQNALG--ALKVAHYGYVLET 214 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH---HHTTCCEEEEESCHHH--HHHHCSEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH---HHCCCEEEEEecCHHH--HHHhCCEEEEEEC
Confidence 999999999999999999 99999999999999998 3368999999996555 8889999999976
No 17
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-48 Score=371.75 Aligned_cols=216 Identities=13% Similarity=0.114 Sum_probs=175.6
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+++||+++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++. .+.
T Consensus 23 ~~l~i~~l~~~y~~--~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~--- 92 (263)
T 2olj_A 23 QMIDVHQLKKSFGS--LE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKD--- 92 (263)
T ss_dssp CSEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-STT---
T ss_pred heEEEEeEEEEECC--EE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Ccc---
Confidence 37999999999953 22 5999999999999999999999999999999999999 8999999998763 111
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-hcC-ccccccccccCccccccccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-SEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.....+|+ .+||+||++.+|+.+||.+|+.+..... +.. ....+++.++++.+++.+..+ +++.+||||||||
T Consensus 93 ---~~~~~~~~-~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQR 167 (263)
T 2olj_A 93 ---TNLNKVRE-EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-AYPDSLSGGQAQR 167 (263)
T ss_dssp ---CCHHHHHH-HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHH
T ss_pred ---ccHHHHhC-cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHH
Confidence 11122343 7999999999999999999997743111 111 112345778899999987654 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSE 295 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~ 295 (382)
|+|||||+.+|++||||| +||+.++..+++.|+++. ++|+|||+||||++. +.++||++++|++ +..++
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~---~~g~tvi~vtHd~~~--~~~~~d~v~~l~~G~i~~~g~ 242 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA---NEGMTMVVVTHEMGF--AREVGDRVLFMDGGYIIEEGK 242 (263)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH---HTTCEEEEECSCHHH--HHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---hCCCEEEEEcCCHHH--HHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999 999999999999999983 348999999996655 8889999999976 33344
Q ss_pred cccee
Q 016817 296 ISGVY 300 (382)
Q Consensus 296 ~~~v~ 300 (382)
+++++
T Consensus 243 ~~~~~ 247 (263)
T 2olj_A 243 PEDLF 247 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=9.1e-49 Score=387.23 Aligned_cols=220 Identities=11% Similarity=0.095 Sum_probs=177.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|++.... +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..... .
T Consensus 3 ~l~i~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~-- 75 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVV----ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK-L-- 75 (353)
T ss_dssp CEEEEEEEEEEGGGTEE----EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTE-E--
T ss_pred EEEEEeEEEEECCEeee----eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccc-c--
Confidence 58899999999642110 4999999999999999999999999999999999999 89999999987632100 0
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccccCccccccccccccccCCCccceeeecc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.....+ +.+|||||++.+|+++||++|+.+.....+.. ...++++.++++.++|.+..+ ++|.+|||||||||+
T Consensus 76 ---~~~~~~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSGGq~QRva 150 (353)
T 1oxx_K 76 ---IVPPED-RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVA 150 (353)
T ss_dssp ---SSCGGG-SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHH
T ss_pred ---cCChhh-CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHH
Confidence 001123 38999999999999999999997643211111 112356778999999987654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEIS 297 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~ 297 (382)
|||||+.+|++||||| +||+..+..+++.|+++. ++.|+|+|+||||++. +..+||++++|++ +..+++.
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~--~~~g~tvi~vTHd~~~--~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLLVVSHDPAD--IFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH--HHHCCEEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999 999999999999999983 4458999999996554 8899999999987 4445555
Q ss_pred ceee
Q 016817 298 GVYD 301 (382)
Q Consensus 298 ~v~~ 301 (382)
+++.
T Consensus 227 ~l~~ 230 (353)
T 1oxx_K 227 DLYD 230 (353)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5653
No 19
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.5e-48 Score=377.03 Aligned_cols=237 Identities=16% Similarity=0.132 Sum_probs=184.1
Q ss_pred ccCCCCccccchhHHHHHHhhhhh--------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeeccc
Q 016817 36 KLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFS 107 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpn 107 (382)
+-+++.+.++.+|+.++++.++.. .....+.|+++||+|+|+++. + +|+||||+|++||++||+|||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~-~----vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGR-E----TLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTC-E----EEEEEEEEECTTCEEEEESSS
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCC-c----eeeeeeEEEcCCCEEEEECCC
Confidence 346778888999999998877631 111235699999999996433 2 599999999999999999999
Q ss_pred CCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC
Q 016817 108 GSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG 186 (382)
Q Consensus 108 GsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~ 186 (382)
|||||||+++|+|+++ ++|+|.++|+++...+. ..+|+ .||||||++.+|+ .||++|+.+.. .
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~---------~~~r~-~i~~v~Q~~~lf~-~Tv~eNi~~~~-----~ 153 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ---------ASLRS-HIGVVPQDTVLFN-DTIADNIRYGR-----V 153 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCH---------HHHHH-TEEEECSSCCCCS-EEHHHHHHTTS-----T
T ss_pred CchHHHHHHHHHcCCCCCCcEEEECCEEcccCCH---------HHHhc-ceEEEecCCccCc-ccHHHHHHhhc-----c
Confidence 9999999999999999 89999999998764331 22554 8999999999997 69999996432 1
Q ss_pred ccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhc
Q 016817 187 VHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLF 253 (382)
Q Consensus 187 ~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l 253 (382)
....+.+.++++.+++.+.+. ++.+.+|||||||||+|||||+.+|+|||||| +||+.++..|++.|
T Consensus 154 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l 233 (306)
T 3nh6_A 154 TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL 233 (306)
T ss_dssp TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 122334455555555543322 14557899999999999999999999999999 99999999999999
Q ss_pred cCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 254 SAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 254 ~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
+++. .++|+|+||||+.. +.. ||+|++|++ +..+++.+++
T Consensus 234 ~~l~----~~~Tvi~itH~l~~--~~~-aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 234 AKVC----ANRTTIVVAHRLST--VVN-ADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHH----TTSEEEEECCSHHH--HHT-CSEEEEEETTEEEEEECHHHHH
T ss_pred HHHc----CCCEEEEEEcChHH--HHc-CCEEEEEECCEEEEECCHHHHH
Confidence 9973 47899999995544 776 899999987 4455554444
No 20
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-48 Score=367.72 Aligned_cols=204 Identities=13% Similarity=0.116 Sum_probs=171.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++|+++||+++|++ .. +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 13 ~~~l~i~~l~~~y~~--~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~---- 82 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE---- 82 (256)
T ss_dssp -CCEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC----
T ss_pred CCeEEEEEEEEEECC--EE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc----
Confidence 358999999999953 23 5999999999999999999999999999999999999 899999999876421
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
...+|+ .+||+||++.+|+.+|+.+|+.+......... ...+++.++++.+||.+... +++.+||||||||
T Consensus 83 ------~~~~~~-~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qR 154 (256)
T 1vpl_A 83 ------PHEVRK-LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRK 154 (256)
T ss_dssp ------HHHHHT-TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHH
T ss_pred ------HHHHhh-cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHH
Confidence 112343 89999999999998999999987542221111 11245678899999987655 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|||||+.+|++||||| +||+.++..+++.|+++ ++.|+|||+||||++. +..+||++++|++
T Consensus 155 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l---~~~g~tiiivtHd~~~--~~~~~d~v~~l~~ 221 (256)
T 1vpl_A 155 LLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA---SQEGLTILVSSHNMLE--VEFLCDRIALIHN 221 (256)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEEECCHHH--HTTTCSEEEEEET
T ss_pred HHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHH---HhCCCEEEEEcCCHHH--HHHHCCEEEEEEC
Confidence 999999999999999999 99999999999999998 3358999999996655 8889999999976
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-47 Score=359.81 Aligned_cols=208 Identities=14% Similarity=0.065 Sum_probs=171.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
|++++|++++|+ . +|+|+||+|++ |+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 1 ml~~~~l~~~y~--~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---- 67 (240)
T 2onk_A 1 MFLKVRAEKRLG--N------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP---- 67 (240)
T ss_dssp CCEEEEEEEEET--T------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT----
T ss_pred CEEEEEEEEEeC--C------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCch----
Confidence 467899999994 3 39999999999 9999999999999999999999999 89999999987643111
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
.+ +.+||+||++.+|+.+|++||+.+.....+. ...++++.++++.+|+.+..+ ++|.+|||||||||+|
T Consensus 68 -------~~-~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~l 137 (240)
T 2onk_A 68 -------ER-RGIGFVPQDYALFPHLSVYRNIAYGLRNVER-VERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVAL 137 (240)
T ss_dssp -------TT-SCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH-HHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHH
T ss_pred -------hh-CcEEEEcCCCccCCCCcHHHHHHHHHHHcCC-chHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHH
Confidence 23 3799999999999999999999754211110 112356778899999987654 9999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
||||+.+|++||||| +||+.++..+++.|+++. ++.|+|||+||||++. +..+||++++|++ +..+++.+
T Consensus 138 Aral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~~g~tvi~vtHd~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ--REFDVPILHVTHDLIE--AAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHH--HHHTCCEEEEESCHHH--HHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999 999999999999999983 3358999999996655 8889999999986 33344444
Q ss_pred ee
Q 016817 299 VY 300 (382)
Q Consensus 299 v~ 300 (382)
++
T Consensus 214 ~~ 215 (240)
T 2onk_A 214 LF 215 (240)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 22
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.1e-47 Score=349.04 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=168.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+|+++|++++|++ . +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.
T Consensus 8 ~~~l~~~~ls~~y~~---~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------ 74 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK---P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------ 74 (214)
T ss_dssp -CEEEEEEEEEESSS---E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------
T ss_pred CceEEEEEEEEEeCC---e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------
Confidence 357899999999954 3 5999999999999999999999999999999999999 8999999998542
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+ +.+||+||++.+|+.+|+.+|+.+....... ....+++.++++.+|+.+. ++++.+|||||||||
T Consensus 75 --------~~~-~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv 142 (214)
T 1sgw_A 75 --------KVK-GKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRV 142 (214)
T ss_dssp --------GGG-GGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHH
T ss_pred --------hhc-CcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHH
Confidence 023 3899999999999989999999765322211 1123567788999999866 499999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..+++.|+++ .+.|+|||++|||++. +..+||+++++..
T Consensus 143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~---~~~g~tiiivtHd~~~--~~~~~d~v~~~~~ 208 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI---LKEKGIVIISSREELS--YCDVNENLHKYST 208 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHH---HHHHSEEEEEESSCCT--TSSEEEEGGGGBC
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEeCC
Confidence 99999999999999999 99999999999999998 3348999999997766 8899999998865
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.8e-46 Score=352.09 Aligned_cols=204 Identities=13% Similarity=0.017 Sum_probs=162.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHh--hc-ccceeeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl--~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
+++++||+++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+ ++ ++|+|.++|+++.....
T Consensus 3 ~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~-- 74 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP-- 74 (250)
T ss_dssp EEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCH--
T ss_pred eEEEEeEEEEECC--EE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCH--
Confidence 5889999999954 23 59999999999999999999999999999999998 66 79999999997643221
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-hcCc---cccccccccCcccccc-ccccccccCC-Ccc
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-SEGV---HHNQRCLRSDDCALMK-NDAEIDDLKS-SPK 216 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~---~~~~~~~~~l~~~~L~-~~~~~~~~~~-LSG 216 (382)
.. .++..++|+||++.+|+.+|+.+|+.+..... .... ...+++.++++.+|+. +.. ++++.+ |||
T Consensus 75 ----~~---~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~~LSg 146 (250)
T 2d2e_A 75 ----DE---RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-SRYLNEGFSG 146 (250)
T ss_dssp ----HH---HHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-GSBTTCC---
T ss_pred ----HH---HHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-cCCcccCCCH
Confidence 11 11236999999999999999999997643211 1111 1124567788999994 444 589999 999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh-hhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL-DARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~-~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+++.|+++ .+.|+|||+||||++. +..+ ||++++|++
T Consensus 147 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l---~~~g~tvi~vtHd~~~--~~~~~~d~v~~l~~ 219 (250)
T 2d2e_A 147 GEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM---RGPNFGALVITHYQRI--LNYIQPDKVHVMMD 219 (250)
T ss_dssp -HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHH---CSTTCEEEEECSSSGG--GGTSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH---HhcCCEEEEEecCHHH--HHHhcCCEEEEEEC
Confidence 99999999999999999999999 99999999999999998 3368999999997666 8777 599998876
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.4e-46 Score=356.82 Aligned_cols=208 Identities=13% Similarity=0.019 Sum_probs=166.0
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh--c-ccceeeeEeecCCCcc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGNSS 139 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~G~I~i~G~~i~~~~ 139 (382)
..++++++||+++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|++ + ++|+|.++|+++....
T Consensus 17 ~~~~l~~~~l~~~y~~--~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVED--KA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp ---CEEEEEEEEEETT--EE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC
T ss_pred CCceEEEEeEEEEECC--EE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC
Confidence 4568999999999953 33 599999999999999999999999999999999994 5 7999999998753221
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhh----hhcC-cc---ccccccccCcccccccccccccc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSW----MSEG-VH---HNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~----~~~~-~~---~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
... .++..++|+||++.+|+.+|+.+|+...... .... .. ..+++.++++.+|+.+...++++
T Consensus 91 ------~~~---~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 161 (267)
T 2zu0_C 91 ------PED---RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV 161 (267)
T ss_dssp ------HHH---HHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBT
T ss_pred ------HHH---HhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 111 1123699999999999999999999764311 1110 01 12356778899999643344888
Q ss_pred C-CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh-hhhhh
Q 016817 212 K-SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL-DARLK 286 (382)
Q Consensus 212 ~-~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~-~d~v~ 286 (382)
. +|||||||||+|||||+.+|++||||| +||+.++..+++.|+++ +++|+|||+||||++. +..+ ||+++
T Consensus 162 ~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l---~~~g~tviivtHd~~~--~~~~~~d~v~ 236 (267)
T 2zu0_C 162 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL---RDGKRSFIIVTHYQRI--LDYIKPDYVH 236 (267)
T ss_dssp TTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTT---CCSSCEEEEECSSGGG--GGTSCCSEEE
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEeeCHHH--HHhhcCCEEE
Confidence 7 599999999999999999999999999 99999999999999998 3458999999997766 7775 89999
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
+|++
T Consensus 237 ~l~~ 240 (267)
T 2zu0_C 237 VLYQ 240 (267)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9876
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-46 Score=356.37 Aligned_cols=212 Identities=15% Similarity=0.085 Sum_probs=171.7
Q ss_pred hhHHHHHhhhcccCC---eeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~---~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
+++++|++++|+.+. .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---- 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKK----ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---- 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH----
T ss_pred EEEEEEEEEEecCCCccccc----eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch----
Confidence 578899999996222 33 5999999999999999999999999999999999999 89999999986531
Q ss_pred eeehhhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCcccccc--ccccccccCCCccce
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMK--NDAEIDDLKSSPKYV 218 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~LSGGq 218 (382)
. .+|+ .+||+||++ .+++.+|+.+|+.+............+++.++++.+|+. +... ++|.+|||||
T Consensus 74 -----~---~~~~-~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGq 143 (266)
T 2yz2_A 74 -----Y---EIRR-NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSGGE 143 (266)
T ss_dssp -----H---HHGG-GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-CCGGGSCHHH
T ss_pred -----H---Hhhh-hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccccc-CChhhCCHHH
Confidence 0 2443 799999995 455568999999764321101111234567889999998 7655 9999999999
Q ss_pred eeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 219 LRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
||||+|||||+.+|++||||| +||+.++..+++.|+++ .+.|+|||+||||++. +..+||++++|++ +.
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l---~~~g~tii~vtHd~~~--~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW---KTLGKTVILISHDIET--VINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECSCCTT--TGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH--HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999 99999999999999998 3348999999997766 8888999999976 33
Q ss_pred ccccccee
Q 016817 293 VSEISGVY 300 (382)
Q Consensus 293 ~~~~~~v~ 300 (382)
.+++.+++
T Consensus 219 ~g~~~~~~ 226 (266)
T 2yz2_A 219 DGTRMEFL 226 (266)
T ss_dssp EEEHHHHH
T ss_pred eCCHHHHh
Confidence 44444454
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.4e-47 Score=361.84 Aligned_cols=205 Identities=14% Similarity=0.044 Sum_probs=166.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC--Cccc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG--NSSH 140 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~--~~~~ 140 (382)
..+|+++||+++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++. ...
T Consensus 19 ~~~l~~~~l~~~y~~--~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~- 91 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG--KT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYS- 91 (279)
T ss_dssp CEEEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CC-
T ss_pred CceEEEEeEEEEECC--EE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCC-
Confidence 447999999999964 22 5999999999999999999999999999999999999 8999999998763 111
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCC--ChhhhhhhHHHHHhh----hhc-CccccccccccCccccccccccccccCC
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGF--NYNRVHEGLEELSSW----MSE-GVHHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~--~~~tv~eni~~~~~~----~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
...+|+ .+||+||++.++ +.+||+||+.+.... +.. .....+++.++++.+|+.+... +++.+
T Consensus 92 --------~~~~~~-~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~ 161 (279)
T 2ihy_A 92 --------AETVRQ-HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-QYIGY 161 (279)
T ss_dssp --------HHHHHT-TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-SBGGG
T ss_pred --------HHHHcC-cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-CChhh
Confidence 112343 799999997543 346999999753211 100 1112245677899999986654 99999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCe--EEEecCCCCChhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPI--LILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~ti--IiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||||||||+|||||+.+|++||||| +||+.++..++++|+++. + +|+|| |+||||++. +..+||++++|
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~--~-~g~tv~~iivtHd~~~--~~~~~d~v~~l 236 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS--D-SYPTLAMIYVTHFIEE--ITANFSKILLL 236 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--H-HCTTCEEEEEESCGGG--CCTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHH--H-CCCEEEEEEEecCHHH--HHHhCCEEEEE
Confidence 99999999999999999999999999 999999999999999983 3 48999 999997665 88899999999
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 237 ~~ 238 (279)
T 2ihy_A 237 KD 238 (279)
T ss_dssp ET
T ss_pred EC
Confidence 76
No 27
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.2e-46 Score=371.09 Aligned_cols=211 Identities=16% Similarity=0.120 Sum_probs=174.7
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccce
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~ 142 (382)
..+.|+++||+|+|+.+... +|+|+||+|++||+++|+||||||||||+|+|+|+++++|+|.++|+++...+.
T Consensus 16 ~~~~i~~~~l~~~y~~~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~-- 89 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITL-- 89 (390)
T ss_dssp SSCCEEEEEEEEESSSSSCC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCH--
T ss_pred CCCeEEEEEEEEEecCCCeE----EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCCh--
Confidence 34679999999999643322 699999999999999999999999999999999998888999999998754321
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCC---------
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS--------- 213 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~--------- 213 (382)
..+|+ .+|||||++.+|+ +||++|+... ....++++.++++.++|.+... ++|.+
T Consensus 90 -------~~~rr-~ig~v~Q~~~lf~-~tv~enl~~~------~~~~~~~v~~~l~~~~L~~~~~-~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 90 -------EQWRK-AFGVIPQKVFIFS-GTFRKNLDPN------AAHSDQEIWKVADEVGLRSVIE-QFPGKLDFVLVDGG 153 (390)
T ss_dssp -------HHHHH-TEEEESCCCCCCS-EEHHHHHCTT------CCSCHHHHHHHHHHTTCHHHHT-TSTTGGGCEECTTT
T ss_pred -------HHHhC-CEEEEcCCcccCc-cCHHHHhhhc------cccCHHHHHHHHHHhCCHHHHh-hccccccccccccc
Confidence 12344 8999999999998 7999999421 1223456778899999987665 89988
Q ss_pred --CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 214 --SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 214 --LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||||||||+|||||+.+|++||||| +||+..+..+++.|+++ . .++|+|+||||++. + ..||+|++|
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~---~-~~~tvi~vtHd~e~--~-~~aDri~vl 226 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA---F-ADCTVILCEARIEA--M-LECDQFLVI 226 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT---T-TTSCEEEECSSSGG--G-TTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH---h-CCCEEEEEEcCHHH--H-HhCCEEEEE
Confidence 99999999999999999999999999 99999999999999987 2 47999999997543 4 469999999
Q ss_pred hh---cccccccceeeE
Q 016817 289 EY---LGVSEISGVYDI 302 (382)
Q Consensus 289 ~~---~~~~~~~~v~~~ 302 (382)
++ +..+++.++|..
T Consensus 227 ~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 227 EENKVRQYDSILELYHY 243 (390)
T ss_dssp ETTEEEEESSHHHHHHC
T ss_pred ECCEEEEECCHHHHHhC
Confidence 87 445666666643
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-45 Score=346.71 Aligned_cols=198 Identities=18% Similarity=0.149 Sum_probs=159.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|+++. . +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+..
T Consensus 1 ml~~~~l~~~y~~~~-~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~--- 72 (243)
T 1mv5_A 1 MLSARHVDFAYDDSE-Q----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE--- 72 (243)
T ss_dssp CEEEEEEEECSSSSS-C----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCS---
T ss_pred CEEEEEEEEEeCCCC-c----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHH---
Confidence 467899999994222 1 6999999999999999999999999999999999999 899999999977543211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSS 214 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~L 214 (382)
.+| +.+||+||++.+|+ .|+.+|+.+.. ......+++.++++.+++.+.+. ++++.+|
T Consensus 73 ------~~~-~~i~~v~q~~~l~~-~tv~enl~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 140 (243)
T 1mv5_A 73 ------NWR-SQIGFVSQDSAIMA-GTIRENLTYGL----EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (243)
T ss_dssp ------CCT-TTCCEECCSSCCCC-EEHHHHTTSCT----TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred ------HHH-hhEEEEcCCCcccc-ccHHHHHhhhc----cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcC
Confidence 133 37999999999988 59999995421 11112234555666666654432 2456799
Q ss_pred ccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||||+|||||+.+|++||||| +||+.++..+++.|+++ . .|+|||+||||++. +. .||++++|++
T Consensus 141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~---~-~~~tvi~vtH~~~~--~~-~~d~v~~l~~ 212 (243)
T 1mv5_A 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL---M-KGRTTLVIAHRLST--IV-DADKIYFIEK 212 (243)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH---H-TTSEEEEECCSHHH--HH-HCSEEEEEET
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHh---c-CCCEEEEEeCChHH--HH-hCCEEEEEEC
Confidence 9999999999999999999999999 99999999999999998 3 58999999996654 65 5899998876
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.6e-46 Score=355.65 Aligned_cols=204 Identities=15% Similarity=0.121 Sum_probs=163.1
Q ss_pred CchhHHHHHhhhcccC-CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc
Q 016817 64 DGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT 141 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~-~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~ 141 (382)
.++|+++||+++|+++ ... +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++....
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~-- 87 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD-- 87 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSC----CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC--
T ss_pred CceEEEEEEEEEeCCCCCce----eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCC--
Confidence 4589999999999752 122 6999999999999999999999999999999999999 8999999998763211
Q ss_pred eeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCc-c------ccccccccCccc--cccccccccccC
Q 016817 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGV-H------HNQRCLRSDDCA--LMKNDAEIDDLK 212 (382)
Q Consensus 142 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~-~------~~~~~~~~l~~~--~L~~~~~~~~~~ 212 (382)
...+|+ .|||+||++.+|+ .||.||+.+.... ... . ....+.++++.+ |+..... +++.
T Consensus 88 -------~~~~~~-~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~ 155 (271)
T 2ixe_A 88 -------HHYLHT-QVAAVGQEPLLFG-RSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGN 155 (271)
T ss_dssp -------HHHHHH-HEEEECSSCCCCS-SBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-GGGT
T ss_pred -------HHHHhc-cEEEEecCCcccc-ccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-CCcC
Confidence 112343 7999999999988 6999999653210 010 0 011233445555 6776554 8999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+++.|+++. ++.|+|||+||||++. +.. ||++++|+
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~g~tviivtHd~~~--~~~-~d~v~~l~ 230 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESP--EWASRTVLLITQQLSL--AER-AHHILFLK 230 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT--TTTTSEEEEECSCHHH--HTT-CSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHH--hhcCCEEEEEeCCHHH--HHh-CCEEEEEE
Confidence 999999999999999999999999999 999999999999999983 3458999999997655 664 89999987
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 231 ~ 231 (271)
T 2ixe_A 231 E 231 (271)
T ss_dssp T
T ss_pred C
Confidence 6
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.1e-46 Score=349.78 Aligned_cols=199 Identities=17% Similarity=0.128 Sum_probs=160.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
..|+++||+++|+++... +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.....
T Consensus 6 ~~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~--- 78 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP--- 78 (247)
T ss_dssp EEEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH---
T ss_pred CceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH---
Confidence 367899999999422222 5999999999999999999999999999999999999 89999999997653221
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKS 213 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~ 213 (382)
..+|+ .+||+||++.+|+ .|+.+|+.+.. .....+++.++++.+++.+.+. ++++.+
T Consensus 79 ------~~~~~-~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~ 145 (247)
T 2ff7_A 79 ------NWLRR-QVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG 145 (247)
T ss_dssp ------HHHHH-HEEEECSSCCCTT-SBHHHHHTTTC-----TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTC
T ss_pred ------HHHHh-cEEEEeCCCcccc-ccHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCC
Confidence 12343 7999999999887 69999996431 1112234555666666654332 145689
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+++.|+++ . +|+|||+||||++. +.. ||++++|++
T Consensus 146 LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~---~-~g~tviivtH~~~~--~~~-~d~v~~l~~ 218 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI---C-KGRTVIIIAHRLST--VKN-ADRIIVMEK 218 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH---H-TTSEEEEECSSGGG--GTT-SSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---c-CCCEEEEEeCCHHH--HHh-CCEEEEEEC
Confidence 99999999999999999999999999 99999999999999997 3 48999999997765 654 899999876
No 31
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-45 Score=388.88 Aligned_cols=249 Identities=13% Similarity=0.106 Sum_probs=202.6
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
.++..|+.+++.....+..+..+.+|+.++++.++... ....+.|+++||+|+|+++. ++|+|+||+|
T Consensus 304 ~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-----~~l~~isl~i 378 (598)
T 3qf4_B 304 RQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK-----PVLKDITFHI 378 (598)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSS-----CSCCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCC-----ccccceEEEE
Confidence 46778999999999999999999999999988765311 11235699999999996533 2699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.+.+ ...+|+ ++|||+|++.+|+ .|++|
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~---------~~~~r~-~i~~v~Q~~~lf~-~tv~e 447 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK---------RSSLRS-SIGIVLQDTILFS-TTVKE 447 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC---------HHHHHH-HEEEECTTCCCCS-SBHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC---------HHHHHh-ceEEEeCCCcccc-ccHHH
Confidence 9999999999999999999999999999 8999999999875332 123555 8999999999997 69999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
|+.+. .....++++.++++.+++.+.+. +.| .+|||||||||+|||||+++|++||||| +
T Consensus 448 ni~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~ 521 (598)
T 3qf4_B 448 NLKYG-----NPGATDEEIKEAAKLTHSDHFIK-HLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSN 521 (598)
T ss_dssp HHHSS-----STTCCTTHHHHHTTTTTCHHHHH-TSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTT
T ss_pred HHhcC-----CCCCCHHHHHHHHHHhCCHHHHH-hccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 99532 22234456677788887765544 444 6899999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
||+.++..+.+.|+++. +|+|+|+|||+++. +.. ||+|++|++ +..+++++++
T Consensus 522 LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~--~~~-~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 522 VDTKTEKSIQAAMWKLM----EGKTSIIIAHRLNT--IKN-ADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp CCHHHHHHHHHHHHHHH----TTSEEEEESCCTTH--HHH-CSEEEEECSSSEEECSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHc----CCCEEEEEecCHHH--HHc-CCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999972 58999999995554 765 899999976 4555554444
No 32
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.2e-45 Score=385.17 Aligned_cols=251 Identities=15% Similarity=0.148 Sum_probs=201.9
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++..|+.+++.....+..+..+.+|+.++++.++... ....++|+++||+|+|+++..+ +|+|+||+|+
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~----~l~~i~l~i~ 367 (582)
T 3b5x_A 292 FGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKP----ALSHVSFSIP 367 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCcc----ccccceEEEC
Confidence 46788999999999999999999999999988764311 1123579999999999753222 6999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||++||+||||||||||+|+|+|+++ ++|+|.++|+++.+.+ ...+|+ ++|||+|++.+|+ .|++||
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~---------~~~~~~-~i~~v~Q~~~l~~-~tv~en 436 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK---------LTNLRR-HFALVSQNVHLFN-DTIANN 436 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC---------HHHHhc-CeEEEcCCCcccc-ccHHHH
Confidence 999999999999999999999999999 8999999999765322 122454 8999999999998 599999
Q ss_pred HHHHHhhhhcCccccccccccCccccccccccccc-----------cCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD-----------LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+.+.. .....++++.++++.+++.+.+. +. ..+||||||||++|||||+++|++||||| +|
T Consensus 437 i~~~~----~~~~~~~~~~~~~~~~~l~~~~~-~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~L 511 (582)
T 3b5x_A 437 IAYAA----EGEYTREQIEQAARQAHAMEFIE-NMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511 (582)
T ss_pred HhccC----CCCCCHHHHHHHHHHCCCHHHHH-hCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 96531 01223455677788888765543 43 47899999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|+.++..+.+.|+++ . +|+|+|+||||++. +. .||++++|++ +..+++++++
T Consensus 512 D~~~~~~i~~~l~~~---~-~~~tvi~itH~~~~--~~-~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 512 DTESERAIQAALDEL---Q-KNKTVLVIAHRLST--IE-QADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred CHHHHHHHHHHHHHH---c-CCCEEEEEecCHHH--HH-hCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999997 3 48999999996554 65 6899999876 3444444443
No 33
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=7.7e-46 Score=388.41 Aligned_cols=251 Identities=16% Similarity=0.112 Sum_probs=199.2
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh--------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
.++.+|+.+++.....+..+..+.+|+.++++.++... ....+.++++||+|+|+++..+ +|+|+||+
T Consensus 288 ~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~----~l~~isl~ 363 (578)
T 4a82_A 288 ELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAP----ILKDINLS 363 (578)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCC----SEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCc----ceeeeEEE
Confidence 45788999999999999999999999999998765311 1123579999999999764432 69999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++||++||+||||||||||+++|+|+++ ++|+|.++|+++.+.+ ...+|+ ++|||+|++.+|+ .|++
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~---------~~~~r~-~i~~v~Q~~~l~~-~tv~ 432 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL---------TGSLRN-QIGLVQQDNILFS-DTVK 432 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC---------HHHHHH-TEEEECSSCCCCS-SBHH
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC---------HHHHhh-heEEEeCCCccCc-ccHH
Confidence 99999999999999999999999999999 8999999999775332 122554 8999999999998 5999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
||+.+. .....++++.++++.+++.+.+. ++...+|||||||||+|||||+++|++||||| +
T Consensus 433 eni~~~-----~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~ 507 (578)
T 4a82_A 433 ENILLG-----RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507 (578)
T ss_dssp HHHGGG-----CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHhcC-----CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 999532 22223344555555555543322 14456899999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
||+.++..+.+.++++. +++|+|+||||++. +.. ||+|++|++ +..+++++++
T Consensus 508 LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~--~~~-~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 508 LDLESESIIQEALDVLS----KDRTTLIVAHRLST--ITH-ADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp CCHHHHHHHHHHHHHHT----TTSEEEEECSSGGG--TTT-CSEEEEEETTEEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHc----CCCEEEEEecCHHH--HHc-CCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999872 47899999996655 764 899999877 4455554444
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.9e-45 Score=347.34 Aligned_cols=194 Identities=16% Similarity=0.090 Sum_probs=164.6
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++ . +|+|+||+|++||+++|+||||||||||+|+|+|+++ + |+|.++|+++....
T Consensus 4 ~l~~~~l~~~----~------vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~----- 67 (249)
T 2qi9_C 4 VMQLQDVAES----T------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS----- 67 (249)
T ss_dssp EEEEEEEEET----T------TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC-----
T ss_pred EEEEEceEEE----E------EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC-----
Confidence 6788899876 2 6999999999999999999999999999999999999 8 99999998653211
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
...+|+ .+||+||++.+|+.+|+.||+.+... ... ..+++.++++.+|+.+... +++.+|||||||||+|
T Consensus 68 ----~~~~~~-~i~~v~q~~~~~~~~tv~e~l~~~~~---~~~-~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~l 137 (249)
T 2qi9_C 68 ----ATKLAL-HRAYLSQQQTPPFATPVWHYLTLHQH---DKT-RTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRL 137 (249)
T ss_dssp ----HHHHHH-HEEEECSCCCCCTTCBHHHHHHTTCS---STT-CHHHHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHH
T ss_pred ----HHHHhc-eEEEECCCCccCCCCcHHHHHHHhhc---cCC-cHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHH
Confidence 112343 79999999999988999999964311 111 2456778899999987655 9999999999999999
Q ss_pred eeeehhHHH-------HHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAE-------IYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~-------iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|+ +||||| +||+.++..+.+.|+++ .++|+|||+||||++. +..+||++++|++
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l---~~~g~tviivtHd~~~--~~~~~d~v~~l~~ 208 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL---SQQGLAIVMSSHDLNH--TLRHAHRAWLLKG 208 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECSCHHH--HHHHCSEEEEEET
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEEC
Confidence 999999999 999999 99999999999999998 3348999999996665 8889999999976
No 35
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.5e-45 Score=384.74 Aligned_cols=251 Identities=15% Similarity=0.124 Sum_probs=200.9
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIP 96 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~ 96 (382)
.++.+|+.+++.....+..+..+.+|+.++++.++... ....++|+++||+|+|+++..+ +|+|+||+|+
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~----~l~~v~~~i~ 367 (582)
T 3b60_A 292 IALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVP----ALRNINLKIP 367 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCC----SEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCc----cccceeEEEc
Confidence 46778999999999999999999999999998765311 1123579999999999743222 6999999999
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
+||++||+||||||||||+|+|+|+++ ++|+|.++|+++.+.+. ..+|+ ++|||+|++.+|+ .|++||
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~---------~~~~~-~i~~v~Q~~~l~~-~tv~en 436 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL---------ASLRN-QVALVSQNVHLFN-DTVANN 436 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH---------HHHHH-TEEEECSSCCCCS-SBHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH---------HHHHh-hCeEEccCCcCCC-CCHHHH
Confidence 999999999999999999999999999 89999999998754321 22454 8999999999998 599999
Q ss_pred HHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---cCC
Q 016817 176 LEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGD 242 (382)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD 242 (382)
+.+.. .....++++.++++.+++.+.+. ++.+.+||||||||++|||||+++|++||||| +||
T Consensus 437 i~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD 512 (582)
T 3b60_A 437 IAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_dssp HHTTT----TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCC
T ss_pred HhccC----CCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 96431 01223455677777777765433 13457899999999999999999999999999 999
Q ss_pred CCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 243 SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 243 ~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
+.++..+.+.|+++ . +|+|+|+||||++. +. .||++++|++ +..++++++
T Consensus 513 ~~~~~~i~~~l~~~---~-~~~tvi~itH~~~~--~~-~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 513 TESERAIQAALDEL---Q-KNRTSLVIAHRLST--IE-QADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHHHHHHHHH---H-TTSEEEEECSCGGG--TT-TCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHH---h-CCCEEEEEeccHHH--HH-hCCEEEEEECCEEEEecCHHHH
Confidence 99999999999998 2 48999999996654 65 5899998876 334444443
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.4e-45 Score=345.57 Aligned_cols=192 Identities=14% Similarity=0.071 Sum_probs=162.5
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++|++++|+.+ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.+
T Consensus 4 ~l~i~~l~~~y~~~-~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------- 64 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------- 64 (253)
T ss_dssp EEEEEEEEEEETTT-TE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE--------------
T ss_pred eEEEeeEEEEeCCC-Ce----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE--------------
Confidence 68999999999622 22 5999999999999999999999999999999999999 8999971
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhh-h----cCccccccccccCccccccccccccccCCCcccee
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWM-S----EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~-~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
+ +.+||+||++.+++.+||.+|+.+..... + ......+++.++++.+|+.+..+ +++.+||||||
T Consensus 65 --------~-~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~ 134 (253)
T 2nq2_C 65 --------Y-QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-REFTSLSGGQR 134 (253)
T ss_dssp --------C-SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHH
T ss_pred --------e-ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-CChhhCCHHHH
Confidence 1 37999999999998899999997643211 0 01112345678899999987655 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.+.|+++. ++.|+|||+||||++. +.++||+++++++
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~~g~tvi~vtHd~~~--~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA--QSQNMTVVFTTHQPNQ--VVAIANKTLLLNK 204 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHH--HTSCCEEEEEESCHHH--HHHHCSEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhcCCEEEEEecCHHH--HHHhCCEEEEEeC
Confidence 99999999999999999999 999999999999999983 3348999999996655 8889999999876
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-45 Score=384.10 Aligned_cols=249 Identities=12% Similarity=0.062 Sum_probs=197.0
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhh--------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
++..|+..++.....++++..+.+|+.++++.++.. .+...+.|+++||+|+|+++..+ +|+|+||+|
T Consensus 291 ~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~----~l~~isl~i 366 (587)
T 3qf4_A 291 QIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDP----VLSGVNFSV 366 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCC----SEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCc----ceeceEEEE
Confidence 456889999999999999999999999999876431 11224579999999999754433 699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++||++||+||||||||||+++|+|+++ ++|+|.+||+++.+.+ ...+|+ ++|||+|++.+|+ .|++|
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~---------~~~~r~-~i~~v~Q~~~lf~-~tv~e 435 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK---------LKDLRG-HISAVPQETVLFS-GTIKE 435 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC---------HHHHHH-HEEEECSSCCCCS-EEHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC---------HHHHHh-heEEECCCCcCcC-ccHHH
Confidence 9999999999999999999999999999 8999999999775332 123555 8999999999997 59999
Q ss_pred hHHHHHhhhhcCccccccccccCccc-----------cccccccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCA-----------LMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
|+.+. .....++++.++++.+ |++.... +++.+||||||||++|||||+++|++||||| +
T Consensus 436 ni~~~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~ 509 (587)
T 3qf4_A 436 NLKWG-----REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSS 509 (587)
T ss_dssp HHTTT-----CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTT
T ss_pred HHhcc-----CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 99532 1222223333333333 4443333 6788999999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
||+.++..+++.|+++. +|+|+|+||||++. +. .||+|++|++ +..+++++++
T Consensus 510 LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~--~~-~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 510 VDPITEKRILDGLKRYT----KGCTTFIITQKIPT--AL-LADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp SCHHHHHHHHHHHHHHS----TTCEEEEEESCHHH--HT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----CCCEEEEEecChHH--HH-hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999872 58999999995544 65 7899999977 4455554444
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8.3e-45 Score=344.93 Aligned_cols=201 Identities=16% Similarity=0.127 Sum_probs=159.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCccccee
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~ 143 (382)
..+|+++||+++|+++... ++|+|+||+|++|++++|+||||||||||+|+|+|+++++|+|.++|+++....
T Consensus 15 ~~~l~i~~l~~~y~~~~~~---~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~---- 87 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNH---RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYN---- 87 (260)
T ss_dssp CCCEEEEEEEECCTTCCSS---CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBC----
T ss_pred CCeEEEEEEEEEeCCCCcC---ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcC----
Confidence 3579999999999653211 169999999999999999999999999999999999987899999998753211
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccc----------cccccCC
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDA----------EIDDLKS 213 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~ 213 (382)
...+|+ .+||+||++.+|+ .|+++|+.+.. .....+++.++++.+++.+.+ .++++.+
T Consensus 88 -----~~~~~~-~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~ 155 (260)
T 2ghi_A 88 -----RNSIRS-IIGIVPQDTILFN-ETIKYNILYGK-----LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK 155 (260)
T ss_dssp -----HHHHHT-TEEEECSSCCCCS-EEHHHHHHTTC-----TTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBC
T ss_pred -----HHHHhc-cEEEEcCCCcccc-cCHHHHHhccC-----CCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCc
Confidence 112444 8999999999987 69999996421 111223344555555554321 1257889
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+++.|+++ . +|+|||+||||++. +. .||++++|++
T Consensus 156 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l---~-~~~tviivtH~~~~--~~-~~d~i~~l~~ 228 (260)
T 2ghi_A 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL---R-KNRTLIIIAHRLST--IS-SAESIILLNK 228 (260)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH---T-TTSEEEEECSSGGG--ST-TCSEEEEEET
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh---c-CCCEEEEEcCCHHH--HH-hCCEEEEEEC
Confidence 99999999999999999999999999 99999999999999998 3 37999999997765 65 4899998876
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=8.1e-45 Score=381.83 Aligned_cols=255 Identities=15% Similarity=0.067 Sum_probs=199.6
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh-----c---CcCch-hHHHHHhhhcccC-CeeeecCCcccCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----I---APDGL-NELRHKFLSYRSG-DFWIPIGGIQKGG 92 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~-i~i~nvs~~y~~~-~~~v~~~vL~~is 92 (382)
.++.+|+.+++.....+..+..+.+|+.++++.++... . ...+. |+++||+|+|+++ +.+ +|+|+|
T Consensus 289 ~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----vl~~is 364 (595)
T 2yl4_A 289 FWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVP----IFQDFS 364 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSE----EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCc----cccceE
Confidence 45678999999999999999999999999988654210 0 11245 9999999999753 223 599999
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.+.+. ..+|+ ++|||+|++.+|+ .|
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~---------~~~~~-~i~~v~Q~~~l~~-~t 433 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNP---------VWLRS-KIGTVSQEPILFS-CS 433 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCH---------HHHHH-SEEEECSSCCCCS-SB
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCH---------HHHHh-ceEEEccCCcccC-CC
Confidence 9999999999999999999999999999999 89999999998754321 12454 8999999999998 69
Q ss_pred hhhhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh--
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-- 239 (382)
++||+.+.... .....++++.++++.+++.+.+. ++.+.+|||||||||+|||||+++|++|||||
T Consensus 434 v~eni~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpt 511 (595)
T 2yl4_A 434 IAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEAT 511 (595)
T ss_dssp HHHHHHTTSSS--TTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred HHHHHhhcCCC--ccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 99999653210 01123455677777777654332 12347899999999999999999999999999
Q ss_pred -cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
+||+.++..+.+.|+++. +|+|+|+||||++. +. .||++++|++ +..+++++++.
T Consensus 512 s~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~--~~-~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 512 SALDAENEYLVQEALDRLM----DGRTVLVIAHRLST--IK-NANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp SSCCHHHHHHHHHHHHHHH----TTSEEEEECCCHHH--HH-HSSEEEEEETTEEEEEECSCC---
T ss_pred cCCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHH--HH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999983 37999999995544 75 5899998876 44556655553
No 40
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7e-44 Score=339.15 Aligned_cols=205 Identities=11% Similarity=0.055 Sum_probs=167.5
Q ss_pred hhHHHHHhhhcccC--CeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~--~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~ 143 (382)
+++++|++++|+++ ... +|+++||+|+ |++++|+||||||||||+|+|+|+++++|+|.++|+++...
T Consensus 1 ml~~~~l~~~y~~~~~~~~----il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~----- 70 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF----SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKI----- 70 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE----EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGC-----
T ss_pred CEEEEEEEEEeCCCCccce----eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcch-----
Confidence 46789999999642 122 5999999999 99999999999999999999999995599999999865311
Q ss_pred ehhhhhhhHhhhccc-eeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCcccccc-ccccccccCCCccceeee
Q 016817 144 MYMEEHNVMRSLQSG-FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMK-NDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSGGqkQR 221 (382)
. .| +.+| |+||++.+ .+|+.+|+.+..... ....+++.++++.+++. +... +++.+||||||||
T Consensus 71 ------~-~~-~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGqkqR 136 (263)
T 2pjz_A 71 ------R-NY-IRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLDRDLFLEMLKALKLGEEILR-RKLYKLSAGQSVL 136 (263)
T ss_dssp ------S-CC-TTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCCHHHHHHHHHHTTCCGGGGG-SBGGGSCHHHHHH
T ss_pred ------H-Hh-hheEEEeCCCCcc--CCcHHHHHHHhhhhc---chHHHHHHHHHHHcCCChhHhc-CChhhCCHHHHHH
Confidence 1 12 3799 99999887 689999997653211 12234577889999998 6655 9999999999999
Q ss_pred cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhh-hhhhhhh---cccc
Q 016817 222 VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDA-RLKICEY---LGVS 294 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d-~v~ll~~---~~~~ 294 (382)
|+|||||+.+|++||||| +||+.++..+.+.|+++ . . |||+||||++. +..+|| ++++|++ +..+
T Consensus 137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~---~--~-tviivtHd~~~--~~~~~d~~i~~l~~G~i~~~g 208 (263)
T 2pjz_A 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---G--K-EGILVTHELDM--LNLYKEYKAYFLVGNRLQGPI 208 (263)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHS---C--S-EEEEEESCGGG--GGGCTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHh---c--C-cEEEEEcCHHH--HHHhcCceEEEEECCEEEEec
Confidence 999999999999999999 99999999999999997 2 2 99999997666 888999 9999976 4445
Q ss_pred cccceeeE
Q 016817 295 EISGVYDI 302 (382)
Q Consensus 295 ~~~~v~~~ 302 (382)
++++++..
T Consensus 209 ~~~~l~~~ 216 (263)
T 2pjz_A 209 SVSELLES 216 (263)
T ss_dssp EHHHHHTE
T ss_pred CHHHHHhh
Confidence 55555543
No 41
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1e-43 Score=402.00 Aligned_cols=254 Identities=12% Similarity=0.059 Sum_probs=206.1
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhh--------hhcCcCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERL--------ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
..+..|+..+......+.....+.+|+.++++.++. +..+..+.|+++||+|+|+.+... +||+|+||+
T Consensus 1025 ~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~---~VL~~isl~ 1101 (1321)
T 4f4c_A 1025 TISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEI---EILKGLSFS 1101 (1321)
T ss_dssp HTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSS---CSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCC---ccccceeEE
Confidence 345678888888888888888889999999887653 111224579999999999754321 269999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++||.+|||||||||||||+++|.|+++ ++|+|.+||.|+.+.+. ..+|+ +|++|+|+|.||+ .|++
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~---------~~lR~-~i~~V~Qdp~LF~-gTIr 1170 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNP---------EHTRS-QIAIVSQEPTLFD-CSIA 1170 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCH---------HHHHT-TEEEECSSCCCCS-EEHH
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCH---------HHHHh-heEEECCCCEeeC-ccHH
Confidence 99999999999999999999999999999 89999999999876542 23676 8999999999998 7999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccccccc-----------CCCccceeeecceeeeehhHHHHHHHHh---
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-----------KSSPKYVLRRVDFAMVVSNIAEIYKALK--- 239 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~LSGGqkQRvaIAraL~~~P~iLLLDE--- 239 (382)
+||.+.. ......++++.++++.+++.+++. ..| .+||||||||++|||||+++|+||||||
T Consensus 1171 eNI~~gl---d~~~~sd~ei~~Al~~a~l~~~I~-~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTS 1246 (1321)
T 4f4c_A 1171 ENIIYGL---DPSSVTMAQVEEAARLANIHNFIA-ELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246 (1321)
T ss_dssp HHHSSSS---CTTTSCHHHHHHHHHHTTCHHHHH-TSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred HHHhccC---CCCCCCHHHHHHHHHHhCChHHHH-cCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccc
Confidence 9995321 012334567888888888876544 333 3499999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccceee
Q 016817 240 AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVYD 301 (382)
Q Consensus 240 ~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~~ 301 (382)
+||+++...|++.|+++. +|+|+|+||| +++++.. ||+|++|++ ++.|++++.+.
T Consensus 1247 aLD~~tE~~Iq~~l~~~~----~~~TvI~IAH--RLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1247 ALDTESEKVVQEALDRAR----EGRTCIVIAH--RLNTVMN-ADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp STTSHHHHHHHHHHTTTS----SSSEEEEECS--SSSTTTT-CSEEEEESSSSEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHc----CCCEEEEecc--CHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999973 6899999999 7877875 777888876 66777766663
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=8.8e-43 Score=326.66 Aligned_cols=189 Identities=14% Similarity=0.071 Sum_probs=146.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+|+++|++++|+.+..+ +|+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------ 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------ 66 (237)
T ss_dssp CEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------
T ss_pred eEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------
Confidence 57899999999642222 6999999999999999999999999999999999999 899999987
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCc---ccccc-----ccccccccCCCcc
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDD---CALMK-----NDAEIDDLKSSPK 216 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~---~~~L~-----~~~~~~~~~~LSG 216 (382)
.+||+||++.++ ..|+.+|+.+... . .....+++.++++ .+++. ..+ ++++.+|||
T Consensus 67 -----------~i~~v~Q~~~~~-~~tv~enl~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSg 130 (237)
T 2cbz_A 67 -----------SVAYVPQQAWIQ-NDSLRENILFGCQ-L--EEPYYRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSG 130 (237)
T ss_dssp -----------CEEEECSSCCCC-SEEHHHHHHTTSC-C--CTTHHHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCH
T ss_pred -----------EEEEEcCCCcCC-CcCHHHHhhCccc-c--CHHHHHHHHHHHhhHHHHHhccccccccc-cCCCCCCCH
Confidence 379999998765 5899999964321 0 1111111112222 22221 123 378999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+++.|.+.. ...+|+|||+||||++. +. .||++++|++
T Consensus 131 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~~~~tviivtH~~~~--~~-~~d~v~~l~~ 203 (237)
T 2cbz_A 131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPK-GMLKNKTRILVTHSMSY--LP-QVDVIIVMSG 203 (237)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTT-STTTTSEEEEECSCSTT--GG-GSSEEEEEET
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHH-hhcCCCEEEEEecChHH--HH-hCCEEEEEeC
Confidence 99999999999999999999999 999999999999995320 01248999999997766 65 5899988876
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.1e-43 Score=326.61 Aligned_cols=186 Identities=13% Similarity=0.054 Sum_probs=147.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+|+++|++++|+.+..+ +|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|
T Consensus 4 ~~~l~~~~l~~~y~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---------- 69 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 69 (229)
T ss_dssp CEEEEEEEEEECSSTTSCC----SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----------
T ss_pred cceEEEEEEEEEeCCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----------
Confidence 3578999999999643322 6999999999999999999999999999999999999 899999987
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccc----------cccccC
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDA----------EIDDLK 212 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 212 (382)
.+||++|++.+|+ .|++||+.+... . ......++++.+++.+.+ .++++.
T Consensus 70 -------------~i~~v~q~~~~~~-~tv~enl~~~~~-----~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 129 (229)
T 2pze_A 70 -------------RISFCSQFSWIMP-GTIKENIIFGVS-----Y-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 129 (229)
T ss_dssp -------------CEEEECSSCCCCS-BCHHHHHHTTSC-----C-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCT
T ss_pred -------------EEEEEecCCcccC-CCHHHHhhccCC-----c-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCC
Confidence 3789999999988 499999964310 0 001111222222222111 124568
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhh-ccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRL-FSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~-l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+++. ++++ . .|+|||+||||++. +. .||++++|
T Consensus 130 ~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~-~~~tvi~vtH~~~~--~~-~~d~v~~l 202 (229)
T 2pze_A 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---M-ANKTRILVTSKMEH--LK-KADKILIL 202 (229)
T ss_dssp TSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC---T-TTSEEEEECCCHHH--HH-HCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh---h-CCCEEEEEcCChHH--HH-hCCEEEEE
Confidence 999999999999999999999999999 9999999999996 5665 2 47899999997654 65 48999888
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
++
T Consensus 203 ~~ 204 (229)
T 2pze_A 203 HE 204 (229)
T ss_dssp ET
T ss_pred EC
Confidence 76
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.6e-43 Score=395.38 Aligned_cols=249 Identities=12% Similarity=0.098 Sum_probs=204.0
Q ss_pred eccccchhhhhhhccCCCCccccchhHHHHHHhhhhh---------hcCcCchhHHHHHhhhcccCCeeeecCCcccCCC
Q 016817 23 WRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLA---------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93 (382)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl 93 (382)
..+..|+..++.....+..+.++.+|+.++++.++.. .....+.|+++||+|+|+..... ++|+|+||
T Consensus 363 ~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~---~vL~~isl 439 (1321)
T 4f4c_A 363 MMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDV---PILRGMNL 439 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTS---CSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCC---ceeeceEE
Confidence 4567899999999999999999999999999876531 01123479999999999754211 26999999
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRV 172 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv 172 (382)
+|++|+.+|||||||||||||+++|.|+++ ++|+|.+||+++++.+. ..+|+ +||||+|++.+|+ .|+
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~---------~~lr~-~i~~v~Q~~~Lf~-~TI 508 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINL---------EFLRK-NVAVVSQEPALFN-CTI 508 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCH---------HHHHH-HEEEECSSCCCCS-EEH
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccH---------HHHhh-cccccCCcceeeC-Cch
Confidence 999999999999999999999999999999 89999999999876543 22665 8999999999998 799
Q ss_pred hhhHHHHHhhhhcCccccccccccCccccccccccccccC-----------CCccceeeecceeeeehhHHHHHHHHh--
Q 016817 173 HEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-----------SSPKYVLRRVDFAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 173 ~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------~LSGGqkQRvaIAraL~~~P~iLLLDE-- 239 (382)
+|||.++ .....++++.++++.+++.+++. +.|. .||||||||++||||++++|+||||||
T Consensus 509 ~eNI~~g-----~~~~~~~~v~~a~~~a~l~~~i~-~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t 582 (1321)
T 4f4c_A 509 EENISLG-----KEGITREEMVAACKMANAEKFIK-TLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 582 (1321)
T ss_dssp HHHHHTT-----CTTCCHHHHHHHHHHTTCHHHHH-HSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred hHHHhhh-----cccchHHHHHHHHHHccchhHHH-cCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence 9999543 33345677888888888776554 4443 499999999999999999999999999
Q ss_pred -cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccc
Q 016817 240 -AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISG 298 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~ 298 (382)
+||++++..+.+.|.++. +|+|+|+||| +++++. .||+|++|++ +..|+.++
T Consensus 583 SaLD~~te~~i~~~l~~~~----~~~T~iiiaH--rls~i~-~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 583 SALDAESEGIVQQALDKAA----KGRTTIIIAH--RLSTIR-NADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp TTSCTTTHHHHHHHHHHHH----TTSEEEEECS--CTTTTT-TCSEEEEEETTEEEEEECHHH
T ss_pred ccCCHHHHHHHHHHHHHHh----CCCEEEEEcc--cHHHHH-hCCEEEEeeCCeeeccCCHHH
Confidence 999999999999999874 6899999999 665576 5777887776 44444333
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=5.4e-41 Score=323.45 Aligned_cols=203 Identities=14% Similarity=0.060 Sum_probs=141.6
Q ss_pred ccccch-hHHHHHHhhhhh-----hcCcCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHH
Q 016817 42 VSTLTP-RLRVLREMERLA-----LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLV 115 (382)
Q Consensus 42 ~~~~~~-~~~~~~~~~~~~-----~~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl 115 (382)
+..+.. ++.++++.+... .....++++++|+++.+ .. +|+++||+|++|++++|+||||||||||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~------vl~~isl~i~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 10 VTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG--TP------VLKDINFKIERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp EEECSSHHHHHHHHHCC-----------------------C--CC------SEEEEEEEECTTCEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHHHHhcccccccccccccCCCceEEEEEEEEcC--ce------EEEeeEEEEcCCCEEEEECCCCCcHHHHH
Confidence 334444 777776655421 12234579999999864 22 69999999999999999999999999999
Q ss_pred HHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCcccccccc
Q 016817 116 NLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCL 194 (382)
Q Consensus 116 ~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~ 194 (382)
|+|+|+++ ++|+|.++| .+||+||++.+|+ .|+++|+. .. .. ......
T Consensus 82 k~l~Gl~~p~~G~I~~~g-----------------------~i~~v~Q~~~l~~-~tv~enl~-~~-~~-----~~~~~~ 130 (290)
T 2bbs_A 82 MMIMGELEPSEGKIKHSG-----------------------RISFCSQNSWIMP-GTIKENII-GV-SY-----DEYRYR 130 (290)
T ss_dssp HHHTTSSCEEEEEEECCS-----------------------CEEEECSSCCCCS-SBHHHHHH-TT-CC-----CHHHHH
T ss_pred HHHhcCCCCCCcEEEECC-----------------------EEEEEeCCCccCc-ccHHHHhh-Cc-cc-----chHHHH
Confidence 99999999 899999986 4799999999888 59999996 21 10 011112
Q ss_pred ccCccccccccc----------cccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhh-ccCccccc
Q 016817 195 RSDDCALMKNDA----------EIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRL-FSAPGLRK 260 (382)
Q Consensus 195 ~~l~~~~L~~~~----------~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~-l~~l~~~~ 260 (382)
++++.+++.+.+ .++++.+|||||||||+|||||+.+|++||||| +||+.++..+++. ++++ .
T Consensus 131 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~---~ 207 (290)
T 2bbs_A 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---M 207 (290)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC---T
T ss_pred HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh---h
Confidence 223333332211 114468999999999999999999999999999 9999999999996 4565 2
Q ss_pred cCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 261 CNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 261 ~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.|+|||+||||++. +. .||++++|++
T Consensus 208 -~~~tviivtHd~~~--~~-~~d~i~~l~~ 233 (290)
T 2bbs_A 208 -ANKTRILVTSKMEH--LK-KADKILILHE 233 (290)
T ss_dssp -TTSEEEEECCCHHH--HH-HSSEEEEEET
T ss_pred -CCCEEEEEecCHHH--HH-cCCEEEEEEC
Confidence 48999999997654 65 5899988876
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.6e-41 Score=381.51 Aligned_cols=250 Identities=14% Similarity=0.056 Sum_probs=193.1
Q ss_pred ccccchhhhhhhccCCCCccccchhHHHHHHhhhhhh---------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCC
Q 016817 24 RSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL---------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD 94 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~ 94 (382)
....|+.++......+..+..+.+|+.++++.++... ....+.|+++||+|+|+++... ++|+|+||+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~---~vL~~isl~ 412 (1284)
T 3g5u_A 336 IGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEV---QILKGLNLK 412 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSC---CSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCC---cceecceEE
Confidence 3456788888888888888889999999887654210 1123579999999999754211 269999999
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
|++||++||+||||||||||+++|+|+++ ++|+|.+||+++.+.+ ...+|+ +||||+|++.+|+ .|++
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~---------~~~~r~-~i~~v~Q~~~l~~-~ti~ 481 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN---------VRYLRE-IIGVVSQEPVLFA-TTIA 481 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC---------HHHHHH-HEEEECSSCCCCS-SCHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC---------HHHHHh-heEEEcCCCccCC-ccHH
Confidence 99999999999999999999999999999 8999999999875432 223565 8999999999998 5999
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
||+.+.. ....++++.++++.+++.+++. .....+|||||||||+|||||+.+|+|||||| +
T Consensus 482 eNi~~g~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~ 556 (1284)
T 3g5u_A 482 ENIRYGR-----EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556 (1284)
T ss_dssp HHHHHHC-----SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCS
T ss_pred HHHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 9996542 2222334444444444332211 14556899999999999999999999999999 9
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---cccccccce
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGV 299 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v 299 (382)
||+.++..+.+.++++. +|+|+|+||| +++++.. ||+|++|++ +..++.+++
T Consensus 557 LD~~~~~~i~~~l~~~~----~~~t~i~itH--~l~~i~~-~d~i~vl~~G~i~~~g~~~~l 611 (1284)
T 3g5u_A 557 LDTESEAVVQAALDKAR----EGRTTIVIAH--RLSTVRN-ADVIAGFDGGVIVEQGNHDEL 611 (1284)
T ss_dssp SCHHHHHHHHHHHHHHH----TTSEEEEECS--CHHHHTT-CSEEEECSSSCCCCEECHHHH
T ss_pred CCHHHHHHHHHHHHHHc----CCCEEEEEec--CHHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence 99999999999998762 5899999999 5555765 889998887 445554444
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.5e-40 Score=373.55 Aligned_cols=252 Identities=13% Similarity=0.113 Sum_probs=194.0
Q ss_pred cccchhhhhhhccCCCCccccchhHHHHHHhhhhhh---------cCcCchhHHHHHhhhcccCCeeeecCCcccCCCCC
Q 016817 25 SAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL---------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i 95 (382)
...|+..+..+...+..+..+.+|+.++++.++... ....+.|+++||+|+|+++... ++|+|+||+|
T Consensus 980 ~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~---~~l~~vsl~i 1056 (1284)
T 3g5u_A 980 GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSI---PVLQGLSLEV 1056 (1284)
T ss_dssp HHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGC---CSBSSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCC---eeecceeEEE
Confidence 345777778888888888889999999888754311 1123569999999999753211 2699999999
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
++||++||+||||||||||+++|+|+++ ++|+|.+||+++...+. ..+|+ ++|||||++.+|+ .|++|
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~---------~~~r~-~i~~v~Q~~~l~~-~ti~e 1125 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV---------QWLRA-QLGIVSQEPILFD-CSIAE 1125 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCH---------HHHTT-SCEEEESSCCCCS-SBHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCH---------HHHHh-ceEEECCCCcccc-ccHHH
Confidence 9999999999999999999999999999 89999999998764321 22555 8999999999887 79999
Q ss_pred hHHHHHhhhhcCccccccccccCcccccccccc----------ccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE----------IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
|+..... .....++.+.++++.+++.+.+. .....+|||||||||+|||||+++|+|||||| +|
T Consensus 1126 Ni~~~~~---~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~l 1202 (1284)
T 3g5u_A 1126 NIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202 (1284)
T ss_dssp HHTCCCS---SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSC
T ss_pred HHhccCC---CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 9953210 11122334455555555544332 02345799999999999999999999999999 99
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh---ccccccccee
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY---LGVSEISGVY 300 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~---~~~~~~~~v~ 300 (382)
|+.++..+.+.|++. . .|+|+|+||||++. +.. ||+|++|++ +..+++++++
T Consensus 1203 D~~~~~~i~~~l~~~---~-~~~tvi~isH~l~~--i~~-~dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A 1203 DTESEKVVQEALDKA---R-EGRTCIVIAHRLST--IQN-ADLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp CHHHHHHHHHHHHHH---S-SSSCEEEECSCTTG--GGS-CSEEEEEETBEEEEEECHHHHH
T ss_pred CHHHHHHHHHHHHHh---C-CCCEEEEEecCHHH--HHc-CCEEEEEECCEEEEECCHHHHH
Confidence 999999999999886 2 58999999996554 764 899999987 4555555544
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-38 Score=330.99 Aligned_cols=191 Identities=10% Similarity=0.028 Sum_probs=162.1
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
...++++|+++.|++- .|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.+++.
T Consensus 267 ~~~l~~~~l~~~~~~~-------~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------- 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-------QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ--------- 330 (538)
T ss_dssp CEEEEECCEEEEETTE-------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---------
T ss_pred cceEEEcceEEEECCE-------EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---------
Confidence 4578889999999542 3888899999999999999999999999999999999 8999997653
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.++|++|+.......||.+|+...... ........+.++++.+++.+..+ ++|.+|||||||||
T Consensus 331 -------------~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRv 394 (538)
T 3ozx_A 331 -------------ILSYKPQRIFPNYDGTVQQYLENASKD--ALSTSSWFFEEVTKRLNLHRLLE-SNVNDLSGGELQKL 394 (538)
T ss_dssp -------------CEEEECSSCCCCCSSBHHHHHHHHCSS--TTCTTSHHHHHTTTTTTGGGCTT-SBGGGCCHHHHHHH
T ss_pred -------------eeEeechhcccccCCCHHHHHHHhhhh--ccchhHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHH
Confidence 688999987665678999998653211 11122345678899999987654 99999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..++++|+++. ++.|+|||+||||++. +..+||+|++|++
T Consensus 395 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~--~~~g~tvi~vsHdl~~--~~~~aDri~vl~~ 461 (538)
T 3ozx_A 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT--RERKAVTFIIDHDLSI--HDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HHTTCEEEEECSCHHH--HHHHCSEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 99999999999999999 999999999999999983 4568999999997666 9999999999986
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.4e-38 Score=326.23 Aligned_cols=189 Identities=18% Similarity=0.112 Sum_probs=160.5
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|+++.|++- .|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~~~-------~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~----------- 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-------RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD----------- 346 (538)
T ss_dssp CEEEEECCEEEEETTE-------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-----------
T ss_pred CeEEEEeeEEEEECCE-------EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-----------
Confidence 4578999999999532 3899999999999999999999999999999999999 89999861
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+||++|++..++.+||.+++...... .....+.+.++++.+++.+.. ++++.+|||||||||
T Consensus 347 ------------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~qrv 410 (538)
T 1yqt_A 347 ------------LTVAYKPQYIKADYEGTVYELLSKIDAS---KLNSNFYKTELLKPLGIIDLY-DREVNELSGGELQRV 410 (538)
T ss_dssp ------------CCEEEECSSCCCCCSSBHHHHHHHHHHH---HHTCHHHHHHTTTTTTCGGGT-TSBGGGCCHHHHHHH
T ss_pred ------------ceEEEEecCCcCCCCCcHHHHHHhhhcc---CCCHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHH
Confidence 2689999998776778998877543111 111234567899999998655 499999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+.+|++||||| +||+.++..++++|+++. ++.|.|||+||||++. +..+||++++|++
T Consensus 411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~--~~~g~tvi~vsHd~~~--~~~~~drv~vl~~ 477 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM--EKNEKTALVVEHDVLM--IDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HHHTCEEEEECSCHHH--HHHHCSEEEEEEE
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 99999999999999999 999999999999999983 3468999999997666 9999999999985
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.6e-38 Score=329.91 Aligned_cols=189 Identities=20% Similarity=0.120 Sum_probs=161.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
..+++++|+++.|++- .|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~~~-------~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~----------- 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-------KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----------- 416 (607)
T ss_dssp CEEEEECCEEEECSSC-------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-----------
T ss_pred ceEEEEeceEEEecce-------EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-----------
Confidence 3578999999999542 3899999999999999999999999999999999999 89999861
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
..+||+||++.+++.+||.+++....... ....+.+.++++.+++.+.. ++++.+|||||||||
T Consensus 417 ------------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~QRv 480 (607)
T 3bk7_A 417 ------------LTVAYKPQYIKAEYEGTVYELLSKIDSSK---LNSNFYKTELLKPLGIIDLY-DRNVEDLSGGELQRV 480 (607)
T ss_dssp ------------CCEEEECSSCCCCCSSBHHHHHHHHHHHH---HHCHHHHHHTHHHHTCTTTT-TSBGGGCCHHHHHHH
T ss_pred ------------eEEEEEecCccCCCCCcHHHHHHhhhccC---CCHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHH
Confidence 26999999987777789988875431110 11234567889999998655 499999999999999
Q ss_pred ceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+|||||+++|++||||| +||+.++..+.++|+++. ++.|.|||+||||++. +..+||++++|++
T Consensus 481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~--~~~g~tvi~vsHd~~~--~~~~adrv~vl~~ 547 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM--EKNEKTALVVEHDVLM--IDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HHTTCEEEEECSCHHH--HHHHCSEEEEEEE
T ss_pred HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEcC
Confidence 99999999999999999 999999999999999983 4468999999997666 8999999999985
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-36 Score=319.67 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=150.4
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cccee---------eeEeecCCCcc
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV---------LFAQTSSGNSS 139 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I---------~i~G~~i~~~~ 139 (382)
+|++++|+... . +|+++| +|++||++||+||||||||||+|+|+|+++ ++|++ .++|.++.
T Consensus 95 ~~ls~~yg~~~-~----~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~--- 165 (607)
T 3bk7_A 95 EDCVHRYGVNA-F----VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ--- 165 (607)
T ss_dssp GSEEEECSTTC-C----EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHH---
T ss_pred CCeEEEECCCC-e----eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehh---
Confidence 89999996432 1 599999 999999999999999999999999999998 89996 34443211
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCCh---hhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNY---NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~---~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
.. ..... .+...+++++|....++. .|+.+|+.. ....+++.++++.+||.+.. ++++.+|||
T Consensus 166 ---~~-~~~~~-~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~--------~~~~~~~~~~L~~lgL~~~~-~~~~~~LSG 231 (607)
T 3bk7_A 166 ---NY-FERLK-NGEIRPVVKPQYVDLLPKAVKGKVRELLKK--------VDEVGKFEEVVKELELENVL-DRELHQLSG 231 (607)
T ss_dssp ---HH-HHHHH-HTSCCCEEECSCGGGGGGTCCSBHHHHHHH--------TCCSSCHHHHHHHTTCTTGG-GSBGGGCCH
T ss_pred ---hh-hhhhh-hhhcceEEeechhhhchhhccccHHHHhhh--------hHHHHHHHHHHHHcCCCchh-CCChhhCCH
Confidence 00 00100 111257788886433221 377777742 12235677889999998765 499999999
Q ss_pred ceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 217 YVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 217 GqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||||+|||||+.+|++||||| +||+.++..+.++|+++. +.|.|||+||||++. +..+||+|++|++
T Consensus 232 GekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~---~~g~tvIivsHdl~~--~~~~adri~vl~~ 303 (607)
T 3bk7_A 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA---NEGKAVLVVEHDLAV--LDYLSDVIHVVYG 303 (607)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH---HTTCEEEEECSCHHH--HHHHCSEEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH---hcCCEEEEEecChHH--HHhhCCEEEEECC
Confidence 99999999999999999999999 999999999999999983 359999999997665 8889999988865
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.9e-36 Score=314.53 Aligned_cols=196 Identities=15% Similarity=0.106 Sum_probs=150.3
Q ss_pred hHH-HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cccee---------eeEeecC
Q 016817 67 NEL-RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV---------LFAQTSS 135 (382)
Q Consensus 67 i~i-~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I---------~i~G~~i 135 (382)
.++ +||+|+|++.. . +|+++| +|++||++||+||||||||||+|+|+|+++ ++|++ .++|.++
T Consensus 21 ~~~~~~ls~~yg~~~-~----~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~ 94 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA-F----VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94 (538)
T ss_dssp ---CCCEEEECSTTC-C----EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTH
T ss_pred hhHhcCcEEEECCcc-c----cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccH
Confidence 455 58999996431 1 599999 999999999999999999999999999998 89996 3444321
Q ss_pred CCcccceeehhhhhhhHhhhccceeeEeCCCCCh---hhhhhhHHHHHhhhhcCccccccccccCccccccccccccccC
Q 016817 136 GNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY---NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~---~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
.. ...... .+...+++++|...+++. .++.+++.. ....+++.++++.+|+.+..+ +++.
T Consensus 95 ~~-------~~~~~~-~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~--------~~~~~~~~~~l~~lgl~~~~~-~~~~ 157 (538)
T 1yqt_A 95 QN-------YFEKLK-NGEIRPVVKPQYVDLIPKAVKGKVIELLKK--------ADETGKLEEVVKALELENVLE-REIQ 157 (538)
T ss_dssp HH-------HHHHHH-TTSCCCEEECSCGGGSGGGCCSBHHHHHHH--------HCSSSCHHHHHHHTTCTTTTT-SBGG
T ss_pred HH-------HHHHHH-HHhhhhhhhhhhhhhcchhhhccHHHHHhh--------hhHHHHHHHHHHHcCCChhhh-CChh
Confidence 10 000000 111257888887554442 266666631 112356778899999986654 9999
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++. +.|+|||+||||++. +..+||+|++|+
T Consensus 158 ~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~---~~g~tvi~vsHd~~~--~~~~~dri~vl~ 232 (538)
T 1yqt_A 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS---EEGKSVLVVEHDLAV--LDYLSDIIHVVY 232 (538)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---HTTCEEEEECSCHHH--HHHHCSEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH--HHHhCCEEEEEc
Confidence 999999999999999999999999999 999999999999999983 369999999997665 888999999886
Q ss_pred h
Q 016817 290 Y 290 (382)
Q Consensus 290 ~ 290 (382)
+
T Consensus 233 ~ 233 (538)
T 1yqt_A 233 G 233 (538)
T ss_dssp E
T ss_pred C
Confidence 4
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.1e-36 Score=315.51 Aligned_cols=196 Identities=14% Similarity=0.098 Sum_probs=156.3
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCce-----eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCccccee
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPV-----ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~G-----e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~ 143 (382)
++++++|+... . +++++||++.+| |++||+||||||||||+|+|+|+++ ++|+.. .
T Consensus 350 ~~~~~~y~~~~-~----~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~------~------- 411 (608)
T 3j16_B 350 ASRAFSYPSLK-K----TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI------P------- 411 (608)
T ss_dssp SSSCCEECCEE-E----ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC------C-------
T ss_pred cceeEEecCcc-c----ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc------c-------
Confidence 66778886432 1 599999999999 7799999999999999999999999 788631 0
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecc
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
...++|++|+...+...|+.+++... ........+.+.++++.+++.+..+ ++|.+|||||||||+
T Consensus 412 ----------~~~i~~~~q~~~~~~~~tv~e~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSGGqkQRv~ 477 (608)
T 3j16_B 412 ----------KLNVSMKPQKIAPKFPGTVRQLFFKK---IRGQFLNPQFQTDVVKPLRIDDIID-QEVQHLSGGELQRVA 477 (608)
T ss_dssp ----------SCCEEEECSSCCCCCCSBHHHHHHHH---CSSTTTSHHHHHHTHHHHTSTTTSS-SBSSSCCHHHHHHHH
T ss_pred ----------CCcEEEecccccccCCccHHHHHHHH---hhcccccHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHH
Confidence 02689999987655557888877421 1111122345667889999987654 999999999999999
Q ss_pred eeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-----ccccc
Q 016817 224 FAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY-----LGVSE 295 (382)
Q Consensus 224 IAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~-----~~~~~ 295 (382)
|||||+++|++||||| +||+.++..+.++|+++. ++.|+|||+||||++. +..+||+|++|++ +..+.
T Consensus 478 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~--~~~g~tviivtHdl~~--~~~~aDrvivl~~~~g~~~~~g~ 553 (608)
T 3j16_B 478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI--LHNKKTAFIVEHDFIM--ATYLADKVIVFEGIPSKNAHARA 553 (608)
T ss_dssp HHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHH--HHHTCEEEEECSCHHH--HHHHCSEEEECEEETTTEEECCC
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHH--HHHhCCEEEEEeCCCCeEEecCC
Confidence 9999999999999999 999999999999999983 4469999999997666 9999999999985 34455
Q ss_pred ccceee
Q 016817 296 ISGVYD 301 (382)
Q Consensus 296 ~~~v~~ 301 (382)
|.++++
T Consensus 554 p~~~~~ 559 (608)
T 3j16_B 554 PESLLT 559 (608)
T ss_dssp CEEHHH
T ss_pred hHHHhh
Confidence 555554
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=1.4e-34 Score=307.91 Aligned_cols=210 Identities=13% Similarity=0.049 Sum_probs=116.8
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHH---------------------HHHHHhhc-ccc
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLV---------------------NLMYSVLS-RSG 126 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl---------------------~~i~Gl~~-~~G 126 (382)
-+|+++.|..+.. ..+|+||||+|++||++||+||||||||||+ ++++|+.. +.|
T Consensus 18 ~~~~~~~~~~~~~---~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~ 94 (670)
T 3ux8_A 18 GSHMDKIIVKGAR---AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVD 94 (670)
T ss_dssp ----CEEEEEEEC---STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCS
T ss_pred CCCcceEEEcCCC---ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCcc
Confidence 3556665533321 1379999999999999999999999999998 88888877 544
Q ss_pred -------eeeeEeecCCCcccceeehhhh----hhhHhhhccceeeEe--CCCCChhhhhhhHHHHHhhhhcCcc---cc
Q 016817 127 -------LVLFAQTSSGNSSHTITMYMEE----HNVMRSLQSGFCVYD--SRGFNYNRVHEGLEELSSWMSEGVH---HN 190 (382)
Q Consensus 127 -------~I~i~G~~i~~~~~~~~~~~~~----~~~~r~~~ig~v~Q~--~~l~~~~tv~eni~~~~~~~~~~~~---~~ 190 (382)
.|.++|.+..........+..+ ...++. .+++++|. ...++.+|+.+|+.+.......... ..
T Consensus 95 ~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 173 (670)
T 3ux8_A 95 AIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFA-RIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIAR 173 (670)
T ss_dssp EEESCCCEEEESSCC-----CCBHHHHTTCC--------------------------CC---------------------
T ss_pred ceeccccceEecCchhhccchhceeeeechhhhHHHHHh-hhcccccccccccccCCcHHHHHHHhhccccchhhhHHHH
Confidence 4445544322111000000000 000111 33444432 2335668999998653211000000 00
Q ss_pred cccc------ccCccccccccccccccCCCccceeeecceeeeehhHHH--HHHHHh---cCCCCcchhhhhhccCcccc
Q 016817 191 QRCL------RSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAE--IYKALK---AGDSKPLDATKRLFSAPGLR 259 (382)
Q Consensus 191 ~~~~------~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~--iLLLDE---~LD~~~~~~i~~~l~~l~~~ 259 (382)
.... .+++.+||.+...++++.+|||||||||+|||||+.+|+ +||||| +||+.++..++++|+++
T Consensus 174 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l--- 250 (670)
T 3ux8_A 174 LILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM--- 250 (670)
T ss_dssp -----CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHH---
Confidence 1111 136678887654459999999999999999999999998 999999 99999999999999998
Q ss_pred ccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 260 KCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 260 ~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
++.|.|||+||||++. +. .||++++|
T Consensus 251 ~~~g~tvi~vtHd~~~--~~-~~d~ii~l 276 (670)
T 3ux8_A 251 RDLGNTLIVVEHDEDT--ML-AADYLIDI 276 (670)
T ss_dssp HHTTCEEEEECCCHHH--HH-HCSEEEEE
T ss_pred HHcCCEEEEEeCCHHH--Hh-hCCEEEEe
Confidence 4469999999997765 65 58888888
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=2e-35 Score=321.90 Aligned_cols=209 Identities=12% Similarity=0.035 Sum_probs=146.3
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++|++++|+++..+ +|+|+||+|++|+++||+||||||||||+|+|+|+++ ++|+|+++|.- ..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~----iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~------~I 738 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKP----QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC------RI 738 (986)
T ss_dssp SEEEEEEEEEECCTTCSSC----SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTC------CE
T ss_pred CceEEEEeeEEEeCCCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCcc------ce
Confidence 4579999999999643222 6999999999999999999999999999999999999 89999997630 00
Q ss_pred eehhhhh---------------hhH-----------------------------------hhhccce--------eeEe-
Q 016817 143 TMYMEEH---------------NVM-----------------------------------RSLQSGF--------CVYD- 163 (382)
Q Consensus 143 ~~~~~~~---------------~~~-----------------------------------r~~~ig~--------v~Q~- 163 (382)
.+..+.. -.+ +++..++ .+|.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 0000000 000 0000011 1111
Q ss_pred -------CC-----CCChhhhhhhHHHHH-------------------hhhh-cCccccccccccCccccccccc-cccc
Q 016817 164 -------SR-----GFNYNRVHEGLEELS-------------------SWMS-EGVHHNQRCLRSDDCALMKNDA-EIDD 210 (382)
Q Consensus 164 -------~~-----l~~~~tv~eni~~~~-------------------~~~~-~~~~~~~~~~~~l~~~~L~~~~-~~~~ 210 (382)
+. .+..+++.+|+.... ...+ ......+++.++++.+||.+.. .+++
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~ 898 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR 898 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSC
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCC
Confidence 00 112234433321000 0000 0111234567788899997533 3488
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
+.+|||||||||+|||||+.+|++||||| +||+.++..+.+.|+++ +.|||+||||++. +..+||++++
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~------g~tVIiISHD~e~--v~~l~DrViv 970 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHSAEF--TKNLTEEVWA 970 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC------SSEEEEECSCHHH--HTTTCCEEEC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh------CCEEEEEECCHHH--HHHhCCEEEE
Confidence 99999999999999999999999999999 99999999999999875 4699999997666 8889999999
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|++
T Consensus 971 L~~ 973 (986)
T 2iw3_A 971 VKD 973 (986)
T ss_dssp CBT
T ss_pred EEC
Confidence 976
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=4.9e-34 Score=296.24 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=139.9
Q ss_pred HHhhhcccCCeeeecCCcccCCCCCC-ceeeeeeecccCCCchhHHHHHHHhhc-cccee-----------eeEeecCCC
Q 016817 71 HKFLSYRSGDFWIPIGGIQKGGMDIP-PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV-----------LFAQTSSGN 137 (382)
Q Consensus 71 nvs~~y~~~~~~v~~~vL~~isl~i~-~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I-----------~i~G~~i~~ 137 (382)
+.+.+|+.+. ++-..|.+. +||++||+||||||||||+|+|+|+++ ++|+| .++|+++..
T Consensus 4 ~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~ 76 (538)
T 3ozx_A 4 EVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN 76 (538)
T ss_dssp CEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHH
T ss_pred CCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHH
Confidence 4567887665 444455554 899999999999999999999999998 89998 455543311
Q ss_pred cccceeehhhhhh----hHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCC
Q 016817 138 SSHTITMYMEEHN----VMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS 213 (382)
Q Consensus 138 ~~~~~~~~~~~~~----~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 213 (382)
..+... ... ..++++.+.+.++. .++.+++.. ....+++.++++.+++.+..+ +++.+
T Consensus 77 -------~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~v~~~l~~--------~~~~~~~~~~l~~l~l~~~~~-~~~~~ 138 (538)
T 3ozx_A 77 -------YFKELYSNELKIV-HKIQYVEYASKFLK-GTVNEILTK--------IDERGKKDEVKELLNMTNLWN-KDANI 138 (538)
T ss_dssp -------HHHHHHTTCCCEE-EECSCTTGGGTTCC-SBHHHHHHH--------HCCSSCHHHHHHHTTCGGGTT-SBGGG
T ss_pred -------HHHHHhhcccchh-hccchhhhhhhhcc-CcHHHHhhc--------chhHHHHHHHHHHcCCchhhc-CChhh
Confidence 000000 000 02333333333333 355554421 122346677889999986654 99999
Q ss_pred CccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||||||||+|||||+.+|++||||| +||+.++..+.++|+++ ++ |+|||+||||++. +..+||+|+++++
T Consensus 139 LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l---~~-g~tii~vsHdl~~--~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL---LK-NKYVIVVDHDLIV--LDYLTDLIHIIYG 212 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH---CT-TSEEEEECSCHHH--HHHHCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH---hC-CCEEEEEEeChHH--HHhhCCEEEEecC
Confidence 99999999999999999999999999 99999999999999998 33 8999999996655 9999999999875
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.1e-33 Score=292.77 Aligned_cols=203 Identities=14% Similarity=0.054 Sum_probs=139.2
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhh
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEE 148 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~ 148 (382)
+|++++|+.+.. .|++++ .+++||++||+||||||||||+|+|+|+++ ++|+|..................+.
T Consensus 81 ~~~~~~Y~~~~~-----~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 81 AHVTHRYSANSF-----KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TTEEEECSTTSC-----EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECCCce-----eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhh
Confidence 467888865431 377776 689999999999999999999999999999 8999831110000000000000000
Q ss_pred h-hhHhhhccceeeEeCCC--CC------hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcccee
Q 016817 149 H-NVMRSLQSGFCVYDSRG--FN------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 149 ~-~~~r~~~ig~v~Q~~~l--~~------~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
. .......+..+++...+ ++ ..++.+++. . ......+++.++++.+|+.+..+ +++.+||||||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~-----~-~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGe~ 227 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK-----L-RMEKSPEDVKRYIKILQLENVLK-RDIEKLSGGEL 227 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHH-----H-HCCSCHHHHHHHHHHHTCTGGGG-SCTTTCCHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHh-----h-hhhhHHHHHHHHHHHcCCcchhC-CChHHCCHHHH
Confidence 0 00111133333322111 11 012222221 1 11122356778899999987655 99999999999
Q ss_pred eecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 220 QRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|||||+.+|++||||| +||+.++..+.++|+++ .+.|+|||+||||++. +..+||+|++|++
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l---~~~g~tvi~vtHdl~~--~~~~~drv~vl~~ 296 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL---LAPTKYVICVEHDLSV--LDYLSDFVCIIYG 296 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGG---GTTTCEEEEECSCHHH--HHHHCSEEEEEES
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH--HHHhCCEEEEEeC
Confidence 99999999999999999999 99999999999999998 4468999999996655 9999999999864
No 58
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-32 Score=279.20 Aligned_cols=184 Identities=9% Similarity=-0.039 Sum_probs=147.7
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-e-eeeEeecCCCcc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-L-VLFAQTSSGNSS 139 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~-I~i~G~~i~~~~ 139 (382)
..++++++||+++|+ ++||++++|++++|+||||||||||+|+|+|+++ ++| + |+++|.
T Consensus 115 ~~~mi~~~nl~~~y~------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------ 176 (460)
T 2npi_A 115 NHTMKYIYNLHFMLE------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------ 176 (460)
T ss_dssp CCTHHHHHHHHHHHH------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------
T ss_pred Ccchhhhhhhhehhh------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------
Confidence 357999999999984 4689999999999999999999999999999999 899 9 999983
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCC---ChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF---NYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~---~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
.+ +.++|+||++.+| +.+++.+|+ +... ...+....+++.++++.+|+.+.. . +.+|||
T Consensus 177 ------------~~-~~i~~vpq~~~l~~~~~~~tv~eni-~~~~-~~~~~~~~~~~~~ll~~~gl~~~~--~-~~~LSg 238 (460)
T 2npi_A 177 ------------PQ-QPIFTVPGCISATPISDILDAQLPT-WGQS-LTSGATLLHNKQPMVKNFGLERIN--E-NKDLYL 238 (460)
T ss_dssp ------------TT-SCSSSCSSCCEEEECCSCCCTTCTT-CSCB-CBSSCCSSCCBCCEECCCCSSSGG--G-CHHHHH
T ss_pred ------------cc-CCeeeeccchhhcccccccchhhhh-cccc-cccCcchHHHHHHHHHHhCCCccc--c-hhhhhH
Confidence 12 3799999997543 346788887 3221 111222345677889999998653 2 899999
Q ss_pred ceeeecceeee--ehhHHHH----HHHHh----cCCCCcchhhhhhccCccccccCCCCeEEEecCCC--CC--hhhhhh
Q 016817 217 YVLRRVDFAMV--VSNIAEI----YKALK----AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM--LS--TEERLD 282 (382)
Q Consensus 217 GqkQRvaIAra--L~~~P~i----LLLDE----~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~--l~--~~~~~~ 282 (382)
||||||+|||| |+.+|++ ||||| +||+. ...+.+++++ .+.|+|+||||.+ +. .+..+|
T Consensus 239 Gq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~------~~~tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 239 ECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK------LNVNIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH------TTCCEEEEECCSSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH------hCCCEEEEEccCchhhhHHHHHHhc
Confidence 99999999999 9999999 99999 89999 6666666654 3789999999877 32 477899
Q ss_pred hh-----hhhhh
Q 016817 283 AR-----LKICE 289 (382)
Q Consensus 283 d~-----v~ll~ 289 (382)
|+ |++|+
T Consensus 312 dr~~~~~vi~l~ 323 (460)
T 2npi_A 312 PELGNNNIFFIP 323 (460)
T ss_dssp HHHCGGGEEEEC
T ss_pred ccccCCEEEEEe
Confidence 99 88887
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=6e-33 Score=302.52 Aligned_cols=182 Identities=12% Similarity=-0.000 Sum_probs=146.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
.+...|++++|++ .. +|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+.. .
T Consensus 435 ~L~~~~ls~~yg~--~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~---~----- 493 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQ---E----- 493 (986)
T ss_dssp EEEEEEEEEEETT--EE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCT---T-----
T ss_pred eeEEeeEEEEECC--EE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCccc---c-----
Confidence 4555688999954 33 5999999999999999999999999999999996 655 343210 0
Q ss_pred hhhhhhHhhhccceeeEeC-CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecce
Q 016817 146 MEEHNVMRSLQSGFCVYDS-RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF 224 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI 224 (382)
+ ..++|++|++ .+++.+|+.+|+.. .. .+. .+++.++++.+|+.+...++++.+|||||||||+|
T Consensus 494 -------~-~~~~~v~q~~~~~~~~ltv~e~l~~---~~-~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaL 559 (986)
T 2iw3_A 494 -------E-CRTVYVEHDIDGTHSDTSVLDFVFE---SG-VGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLAL 559 (986)
T ss_dssp -------T-SCEEETTCCCCCCCTTSBHHHHHHT---TC-SSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHH
T ss_pred -------c-eeEEEEcccccccccCCcHHHHHHH---hh-cCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHH
Confidence 0 1467888875 66778999998853 11 111 45677889999995333359999999999999999
Q ss_pred eeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 225 AMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 225 AraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
||||+.+|++||||| +||+.++..+.+.|++ .|.|||+||||++. +..+||++++|++
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~------~g~tvIivSHdl~~--l~~~adrii~L~~ 620 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT------CGITSITISHDSVF--LDNVCEYIINYEG 620 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH------SCSEEEEECSCHHH--HHHHCSEEEEEET
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh------CCCEEEEEECCHHH--HHHhCCEEEEEEC
Confidence 999999999999999 9999999999999875 48899999996666 8899999998876
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.4e-32 Score=292.52 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=130.3
Q ss_pred CCcccCCCCCCceeeeeeecccCCCchhHHHHHH----------------------HhhcccceeeeEeecCCCccccee
Q 016817 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY----------------------SVLSRSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 86 ~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~----------------------Gl~~~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+|+||||+|++||++||+||||||||||+++|. |+....|.|.++|.++........
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~ 415 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 415 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcch
Confidence 3699999999999999999999999999998764 222234677788776643221100
Q ss_pred e----hhhhhh---------hH---h---------------hhccceeeEeCCCCC------------------------
Q 016817 144 M----YMEEHN---------VM---R---------------SLQSGFCVYDSRGFN------------------------ 168 (382)
Q Consensus 144 ~----~~~~~~---------~~---r---------------~~~ig~v~Q~~~l~~------------------------ 168 (382)
. ..++.. .. + ....|+++|+..+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (670)
T 3ux8_A 416 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 495 (670)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBT
T ss_pred hhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeec
Confidence 0 000000 00 0 012355555544433
Q ss_pred --------hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHH---HHHHH
Q 016817 169 --------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA---EIYKA 237 (382)
Q Consensus 169 --------~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P---~iLLL 237 (382)
.+|+.+|+.+.. .....++..+.++.+++.....++++.+|||||||||+|||||+++| ++|||
T Consensus 496 ~~~~~~~~~ltv~e~l~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llll 570 (670)
T 3ux8_A 496 GKNIAEVLDMTVEDALDFFA-----SIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 570 (670)
T ss_dssp TBCHHHHHTSBHHHHHHHTT-----TCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEE
T ss_pred CCCHHHHhhCCHHHHHHHHH-----HhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 256666665432 11112334566777888654345899999999999999999999886 59999
Q ss_pred Hh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 238 LK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 238 DE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|| +||+.++..++++|+++ ++.|+|||+||||++. +. .||+|++|
T Consensus 571 DEPt~~LD~~~~~~i~~~l~~l---~~~g~tvi~vtHd~~~--~~-~~d~i~~l 618 (670)
T 3ux8_A 571 DEPTTGLHVDDIARLLDVLHRL---VDNGDTVLVIEHNLDV--IK-TADYIIDL 618 (670)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHH--HT-TCSEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCHHH--HH-hCCEEEEe
Confidence 99 99999999999999998 3459999999997765 64 58999998
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=1.3e-29 Score=275.67 Aligned_cols=104 Identities=8% Similarity=-0.019 Sum_probs=85.2
Q ss_pred ccccccCccccccccccccccCCCccceeeecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCC
Q 016817 191 QRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNEN 264 (382)
Q Consensus 191 ~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~ 264 (382)
.+..++++.+||.....++++.+|||||||||+|||||+++| ++||||| +||+..+..++++|+++ .++|.
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L---~~~G~ 859 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL---VDRGN 859 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTC
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhcCC
Confidence 345567888999754345899999999999999999999865 7999999 99999999999999998 44699
Q ss_pred CeEEEecCCCCChhhhhhhhhhhh------hh---ccccccccee
Q 016817 265 PILILTHGDMLSTEERLDARLKIC------EY---LGVSEISGVY 300 (382)
Q Consensus 265 tiIiiTHd~~l~~~~~~~d~v~ll------~~---~~~~~~~~v~ 300 (382)
|||+||||++. +.. ||+|++| ++ +..+++++++
T Consensus 860 TVIvI~HdL~~--i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 860 TVIVIEHNLDV--IKN-ADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEEEECCCHHH--HTT-CSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred EEEEEeCCHHH--HHh-CCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 99999997655 764 8999988 33 5556666655
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=5.9e-29 Score=268.56 Aligned_cols=209 Identities=14% Similarity=0.080 Sum_probs=139.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHH-HHHhhc-------------------
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNL-MYSVLS------------------- 123 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~-i~Gl~~------------------- 123 (382)
...++++|+++. +|+||||+|++|+++||+|+||||||||+++ |+|++.
T Consensus 500 ~~~L~v~~l~~~-----------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~ 568 (842)
T 2vf7_A 500 AGWLELNGVTRN-----------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPAD 568 (842)
T ss_dssp SCEEEEEEEEET-----------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------------
T ss_pred CceEEEEeeeec-----------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccc
Confidence 345777777541 4999999999999999999999999999997 887752
Q ss_pred -------ccc-------eeeeEeecCCCccccee----ehhhhhhhH-----hhhccceeeE------------------
Q 016817 124 -------RSG-------LVLFAQTSSGNSSHTIT----MYMEEHNVM-----RSLQSGFCVY------------------ 162 (382)
Q Consensus 124 -------~~G-------~I~i~G~~i~~~~~~~~----~~~~~~~~~-----r~~~ig~v~Q------------------ 162 (382)
.+| .|.++|.++...+.... ......+.. ..+..||.++
T Consensus 569 ~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G 648 (842)
T 2vf7_A 569 HTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG 648 (842)
T ss_dssp ---CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCS
T ss_pred cccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCC
Confidence 255 56778776643211100 000000000 0012233222
Q ss_pred ----eCCCCC------------------------hhhhhhhHHHHH---hhhhcCccccccccccCcccccccccccccc
Q 016817 163 ----DSRGFN------------------------YNRVHEGLEELS---SWMSEGVHHNQRCLRSDDCALMKNDAEIDDL 211 (382)
Q Consensus 163 ----~~~l~~------------------------~~tv~eni~~~~---~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 211 (382)
+..+++ ..++.+++.... ..+.......+++.++++.+||.....++++
T Consensus 649 ~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~ 728 (842)
T 2vf7_A 649 WVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPA 728 (842)
T ss_dssp EEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCG
T ss_pred ccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCc
Confidence 111111 133444331100 0011111112356678889999863334899
Q ss_pred CCCccceeeecceeeeehhH---HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 212 KSSPKYVLRRVDFAMVVSNI---AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 212 ~~LSGGqkQRvaIAraL~~~---P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
.+|||||||||+|||+|+.+ |++||||| +||+..+..++++|+++ .+.|.|||+||||++. + ..||+|
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L---~~~G~tVIvisHdl~~--i-~~aDri 802 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL---VDAGNTVIAVEHKMQV--V-AASDWV 802 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHH--H-TTCSEE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEcCCHHH--H-HhCCEE
Confidence 99999999999999999996 79999999 99999999999999998 4469999999997665 7 679999
Q ss_pred hhhh
Q 016817 286 KICE 289 (382)
Q Consensus 286 ~ll~ 289 (382)
++|.
T Consensus 803 i~L~ 806 (842)
T 2vf7_A 803 LDIG 806 (842)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9993
No 63
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.92 E-value=1.6e-28 Score=237.74 Aligned_cols=190 Identities=15% Similarity=0.081 Sum_probs=138.3
Q ss_pred ccchhhhhhhccCCCCccccchhHHHHHHhhhhhhcC------cCchhHHHHHhhhcccCCeeeecCCcccCCCCCCcee
Q 016817 26 AAKFDECVKLKLDLPNVSTLTPRLRVLREMERLALIA------PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (382)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge 99 (382)
..|+.+++.+...+..+..+..|+.++++.++..... ..++|+++||+|+|+ .. +|+++||+|++|+
T Consensus 55 ~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~-~~------vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 55 AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF-IN------ALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH-HH------HHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC-hh------hhccceEEecCCC
Confidence 5789999999999999999999999999887542111 123699999999996 22 6999999999999
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh-hHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE-GLEE 178 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e-ni~~ 178 (382)
+++|+||||||||||+++|+|++ +|+|.. |++|++.+|. .|+.+ |+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~----------------------------~v~q~~~lf~-~ti~~~ni~~ 176 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL--GGSVLS----------------------------FANHKSHFWL-ASLADTRAAL 176 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH--TCEEEC----------------------------GGGTTSGGGG-GGGTTCSCEE
T ss_pred EEEEECCCCCcHHHHHHHHhhhc--CceEEE----------------------------EecCcccccc-ccHHHHhhcc
Confidence 99999999999999999999999 788743 3344554444 35554 5421
Q ss_pred HHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-cCCCCcchhhhhhccCcc
Q 016817 179 LSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-AGDSKPLDATKRLFSAPG 257 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-~LD~~~~~~i~~~l~~l~ 257 (382)
. .. . ...+.+.++.+ +.+.++ +.+|||||||| ||||+.+|+||| = +||+.++..+..
T Consensus 177 ~-----~~-~-~~~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl--Ts~LD~~~~~~i~~------ 234 (305)
T 2v9p_A 177 V-----DD-A-THACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV--TSNIDVQAEDRYLY------ 234 (305)
T ss_dssp E-----EE-E-CHHHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE--EESSCSTTCGGGGG------
T ss_pred C-----cc-c-cHHHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE--ECCCCHHHHHHHHH------
Confidence 1 00 0 01122222221 222221 77999999999 999999999999 7 999999988752
Q ss_pred ccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 258 LRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 258 ~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+||++.. + ..+|+| +|++
T Consensus 235 -----------ltH~~~~--~-~~aD~i-vl~~ 252 (305)
T 2v9p_A 235 -----------LHSRVQT--F-RFEQPC-TDES 252 (305)
T ss_dssp -----------GTTTEEE--E-ECCCCC-CCC-
T ss_pred -----------HhCCHHH--H-HhCCEE-EEeC
Confidence 1785443 4 468888 8876
No 64
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=1.4e-27 Score=219.18 Aligned_cols=140 Identities=10% Similarity=-0.051 Sum_probs=92.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+|+++ ++|++++|+||||||||||+++|+|+ + ++|+|.. .++. ... ...+ +.+||+||++
T Consensus 15 ~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-------~~~---~~~~-~~ig~v~q~~- 75 (208)
T 3b85_A 15 YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-------RPA---VEAG-EKLGFLPGTL- 75 (208)
T ss_dssp HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-------ECS---CCTT-CCCCSSCC---
T ss_pred HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-------CCc---hhhh-cceEEecCCH-
Confidence 68885 89999999999999999999999999 8 8999953 2111 000 0123 3799999986
Q ss_pred CCChhhhhhhH-HHHHhhhh--cCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh--c
Q 016817 166 GFNYNRVHEGL-EELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--A 240 (382)
Q Consensus 166 l~~~~tv~eni-~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--~ 240 (382)
.+|+ .+...... ......+.+.++++ + .| ||||||+|||||+.+|++||||| +
T Consensus 76 -------~enl~~~~~~~~~~~~~~~~~~~~~~~l~----------~---gl--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 76 -------NEKIDPYLRPLHDALRDMVEPEVIPKLME----------A---GI--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp -----------CTTTHHHHHHHTTTSCTTHHHHHHH----------T---TS--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred -------HHHHHHHHHHHHHHHHHhccHHHHHHHHH----------h---CC--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2232 11000000 01011111222211 1 22 99999999999999999999999 2
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
- ++..++++|+++ . .|+||| ||||++.
T Consensus 134 ~---~~~~l~~~l~~l---~-~g~tii-vtHd~~~ 160 (208)
T 3b85_A 134 T---TPAQMKMFLTRL---G-FGSKMV-VTGDITQ 160 (208)
T ss_dssp C---CHHHHHHHHTTB---C-TTCEEE-EEEC---
T ss_pred c---cHHHHHHHHHHh---c-CCCEEE-EECCHHH
Confidence 2 889999999987 2 488999 9997765
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=1.6e-28 Score=266.22 Aligned_cols=202 Identities=15% Similarity=0.103 Sum_probs=137.8
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHH-Hhh----c----ccc---------
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVL----S----RSG--------- 126 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~-Gl~----~----~~G--------- 126 (382)
+.++++|++. . +|+||||+|++|+++||+|+||||||||+++|+ |.+ . ..|
T Consensus 628 ~~L~v~~l~~-----~------~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~ 696 (972)
T 2r6f_A 628 RWLEVVGARE-----H------NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE 696 (972)
T ss_dssp CEEEEEEECS-----S------SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGG
T ss_pred eEEEEecCcc-----c------ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccc
Confidence 4566777642 1 499999999999999999999999999999864 332 1 223
Q ss_pred ----eeeeEeecCCCcccce--ee--hhhhhhhH-----hhhccceeeEeCCCCC-------------------------
Q 016817 127 ----LVLFAQTSSGNSSHTI--TM--YMEEHNVM-----RSLQSGFCVYDSRGFN------------------------- 168 (382)
Q Consensus 127 ----~I~i~G~~i~~~~~~~--~~--~~~~~~~~-----r~~~ig~v~Q~~~l~~------------------------- 168 (382)
.|.++|.++....... .+ .....+.+ ..+.+||++|.+.+.+
T Consensus 697 ~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~ 776 (972)
T 2r6f_A 697 HLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVY 776 (972)
T ss_dssp GCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEE
T ss_pred ccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccc
Confidence 2667776654221100 00 00000100 0124677777532210
Q ss_pred -----------------------------hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcccee
Q 016817 169 -----------------------------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 169 -----------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.+|+.+++.++. ......+..++++.+||.....++++.+||||||
T Consensus 777 ~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~-----~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 777 VPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA-----SIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp EECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC-----SCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHH
T ss_pred ccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh-----cchhHHHHHHHHHHcCCCcccccCchhhCCHHHH
Confidence 123444443211 1111123456788999986233489999999999
Q ss_pred eecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 220 QRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||+|||+|+.+| ++||||| +||+..+..++++|+++ .+.|.|||+||||++. +. .||+|++|
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L---~~~G~TVIvisHdl~~--i~-~aDrIivL 920 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL---VDNGDTVLVIEHNLDV--IK-TADYIIDL 920 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHH--HT-TCSEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEcCCHHH--HH-hCCEEEEE
Confidence 9999999999865 9999999 99999999999999998 4469999999997665 64 79999999
No 66
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.91 E-value=1.6e-27 Score=217.37 Aligned_cols=171 Identities=10% Similarity=-0.074 Sum_probs=115.3
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
+++| .+|++|++++|+||||||||||+|+|+|+++ ..+.+.+.+.+. .. ..+ +.++|+||++.
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~-----------~~--~~~-~~i~~~~q~~~ 74 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP-----------RP--GEV-DGVDYHFIDPT 74 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCC-----------CT--TCC-BTTTBEECCHH
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCC-----------cc--ccc-CCCeeEecCHH
Confidence 5888 7999999999999999999999999999986 333322222110 00 012 37999999988
Q ss_pred CCChhhhhhhHHHHHhhhh----cCc---ccccccccc------CccccccccccccccCCCccceeeecceeeeehhHH
Q 016817 166 GFNYNRVHEGLEELSSWMS----EGV---HHNQRCLRS------DDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA 232 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~----~~~---~~~~~~~~~------l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P 232 (382)
+|+.+++.+++......+. .+. ..++++.+. ++.+|+.+.. ++++.+|| +|+.+|
T Consensus 75 ~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~lS-----------~l~~~p 142 (207)
T 1znw_A 75 RFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIK-KTMPEAVT-----------VFLAPP 142 (207)
T ss_dssp HHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHH-HHCTTSEE-----------EEEECS
T ss_pred HHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHH-HhcCCcEE-----------EEEECC
Confidence 8888888776632110000 011 111233333 7788887544 48899998 899999
Q ss_pred HHHHHHh---cC----CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 233 EIYKALK---AG----DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 233 ~iLLLDE---~L----D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
++++||| ++ |+..+..+.++++++. ++.|.|+|+||||++. +..+||+|++|.
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~--~~~g~tvi~vtHdl~~--~~~~~d~i~~l~ 202 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELA--AQGDFDKVVVNRRLES--ACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH--GGGGSSEEEECSSHHH--HHHHHHHHHC--
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--hhccCcEEEECCCHHH--HHHHHHHHHHhc
Confidence 9999999 66 5668899999999883 4468999999996555 999999999884
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=6.1e-28 Score=262.48 Aligned_cols=202 Identities=15% Similarity=0.085 Sum_probs=135.0
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHH-Hhh----c----ccce--------
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVL----S----RSGL-------- 127 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~-Gl~----~----~~G~-------- 127 (382)
+.++++|++. . +|+||||+|++|+++||+|+||||||||+++|. |.+ . ..|.
T Consensus 646 ~~L~v~~l~~-----~------~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~ 714 (993)
T 2ygr_A 646 RQLTVVGARE-----H------NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLD 714 (993)
T ss_dssp SEEEEEEECS-----T------TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCT
T ss_pred ceEEEecCcc-----c------cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCcc
Confidence 3566666642 1 499999999999999999999999999999953 433 1 1333
Q ss_pred -----eeeEeecCCCcccce--ee--hhhhhhhH-----hhhccceeeEeCCCC----------------------C---
Q 016817 128 -----VLFAQTSSGNSSHTI--TM--YMEEHNVM-----RSLQSGFCVYDSRGF----------------------N--- 168 (382)
Q Consensus 128 -----I~i~G~~i~~~~~~~--~~--~~~~~~~~-----r~~~ig~v~Q~~~l~----------------------~--- 168 (382)
|.++|.++....... .+ .....+.+ ..+..||++|.+.+. +
T Consensus 715 ~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~ 794 (993)
T 2ygr_A 715 YLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVY 794 (993)
T ss_dssp TCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEE
T ss_pred ccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccce
Confidence 455555543211100 00 00000000 112467776643221 1
Q ss_pred -----------------------------hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcccee
Q 016817 169 -----------------------------YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL 219 (382)
Q Consensus 169 -----------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk 219 (382)
.+|+.+++.++. ......+..++++.+||.....++++.+||||||
T Consensus 795 ~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~-----~~~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGek 869 (993)
T 2ygr_A 795 VPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFE-----PIAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEA 869 (993)
T ss_dssp EECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHST-----TCHHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHH
T ss_pred eeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhh-----cchHHHHHHHHHHHcCCCcccccCccccCCHHHH
Confidence 123333333211 1111123456788899986233489999999999
Q ss_pred eecceeeeehhHH---HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 220 RRVDFAMVVSNIA---EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 220 QRvaIAraL~~~P---~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||+|||+|+.+| ++||||| +||+..+..++++|+++ .+.|.|||+||||++. + ..||+|++|
T Consensus 870 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L---~~~G~TVIvisHdl~~--i-~~aDrIivL 938 (993)
T 2ygr_A 870 QRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGL---VDKGNTVIVIEHNLDV--I-KTSDWIIDL 938 (993)
T ss_dssp HHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEECCCHHH--H-TTCSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEcCCHHH--H-HhCCEEEEE
Confidence 9999999999864 9999999 99999999999999998 3469999999997665 6 479999999
No 68
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=2.1e-27 Score=237.75 Aligned_cols=70 Identities=16% Similarity=-0.011 Sum_probs=63.1
Q ss_pred CccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 214 SPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 214 LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
|||||||||+||++|+.+| ++||||| +||+..+..+.+.|+++ . +|.|||+||||+.+ + ..||+++++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l---~-~~~~vi~itH~~~~--~-~~~d~i~~l 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL---A-DTRQVLVVTHLAQI--A-ARAHHHYKV 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHH---T-TTSEEEEECSCHHH--H-TTCSEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---h-CCCEEEEEeCcHHH--H-hhcCeEEEE
Confidence 6999999999999999999 9999999 99999999999999998 3 58999999997654 5 468999888
Q ss_pred hh
Q 016817 289 EY 290 (382)
Q Consensus 289 ~~ 290 (382)
.+
T Consensus 369 ~k 370 (415)
T 4aby_A 369 EK 370 (415)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=1.3e-26 Score=232.90 Aligned_cols=169 Identities=10% Similarity=-0.063 Sum_probs=133.8
Q ss_pred CcccCCCCCCcee--------------------eeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeeh
Q 016817 87 GIQKGGMDIPPVI--------------------TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 87 vL~~isl~i~~Ge--------------------~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
+|++|||+|++|+ ++||+||||||||||+|+|+|+++ ++|+|.++|.++.
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t--------- 108 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--------- 108 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------------
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---------
Confidence 6999999999999 999999999999999999999999 8999999987431
Q ss_pred hhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccc--eeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKY--VLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGG--qkQRva 223 (382)
+.++++|++ .++++++.|++.+. . ....+.++++.+++.+. . ..+. |||| |+||++
T Consensus 109 ----------~~~~v~q~~-~~~~ltv~D~~g~~-----~---~~~~~~~~L~~~~L~~~-~-~~~~-lS~G~~~kqrv~ 166 (413)
T 1tq4_A 109 ----------MERHPYKHP-NIPNVVFWDLPGIG-----S---TNFPPDTYLEKMKFYEY-D-FFII-ISATRFKKNDID 166 (413)
T ss_dssp ----------CCCEEEECS-SCTTEEEEECCCGG-----G---SSCCHHHHHHHTTGGGC-S-EEEE-EESSCCCHHHHH
T ss_pred ----------eeEEecccc-ccCCeeehHhhccc-----c---hHHHHHHHHHHcCCCcc-C-CeEE-eCCCCccHHHHH
Confidence 127899985 56778998877321 1 13456778888888754 3 4444 9999 999999
Q ss_pred eeeeehh----------HHHHHHHHh---cCCCCcchhhhhhccCcccc--ccC----CCCeEEEecCCCCChhhhhhhh
Q 016817 224 FAMVVSN----------IAEIYKALK---AGDSKPLDATKRLFSAPGLR--KCN----ENPILILTHGDMLSTEERLDAR 284 (382)
Q Consensus 224 IAraL~~----------~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~--~~~----g~tiIiiTHd~~l~~~~~~~d~ 284 (382)
||+||+. +|++++||| +||+..+..+++.|+++... .+. ..+++++||++.-..+..++++
T Consensus 167 la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~ 246 (413)
T 1tq4_A 167 IAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDK 246 (413)
T ss_dssp HHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHH
Confidence 9999999 999999999 99999999999999987300 012 3568889996554447888887
Q ss_pred hh
Q 016817 285 LK 286 (382)
Q Consensus 285 v~ 286 (382)
+.
T Consensus 247 I~ 248 (413)
T 1tq4_A 247 LI 248 (413)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=1e-26 Score=214.39 Aligned_cols=179 Identities=9% Similarity=0.021 Sum_probs=115.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
.|+||||+|++|++++|+||||||||||+++|+|++ + |+|.+ |.++...... ...+ ..++|+||++.+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~-g~~~~~~~~~--------~~~~-~~i~~~~~~~~~ 79 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF-SVSCTTRKKR--------EKEK-EGVDYYFIDKTI 79 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE-CCCEECSCCC--------SSCC-BTTTBEECCHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE-eecccCCCCC--------cccc-cCCeEEECCHHH
Confidence 499999999999999999999999999999999999 4 99999 7754321110 0022 379999999877
Q ss_pred CChhh-hhhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCccceeeecce-----eeeehhHHHHHHHHh
Q 016817 167 FNYNR-VHEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF-----AMVVSNIAEIYKALK 239 (382)
Q Consensus 167 ~~~~t-v~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaI-----AraL~~~P~iLLLDE 239 (382)
|+.++ ..+++........ .+.. ...+.++++...+. +. ...|||||+||++| ||+|+.+|++++|||
T Consensus 80 ~~~~~~~~~~l~~~~~~~~~~g~~-~~~i~~~l~~~~~~--il---~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 80 FEDKLKNEDFLEYDNYANNFYGTL-KSEYDKAKEQNKIC--LF---EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEE-HHHHHHHHHTTCEE--EE---EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred HHHhhhccchhhhhhcccccCCCc-HHHHHHHHhCCCcE--EE---EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 77654 2223211100000 0111 12233333332221 11 25789999999999 999999999999999
Q ss_pred ---cCCCCcchhhhhhccCcccccc------CCCCeEEEecCCCCChhhhhhhhhhh
Q 016817 240 ---AGDSKPLDATKRLFSAPGLRKC------NENPILILTHGDMLSTEERLDARLKI 287 (382)
Q Consensus 240 ---~LD~~~~~~i~~~l~~l~~~~~------~g~tiIiiTHd~~l~~~~~~~d~v~l 287 (382)
++|..+...+.+.+.+.. .+ .+.+.|+++|| ++++....++++.
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~--~~~~~~h~~~~d~iiv~~~--~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLN--IELHEANLLNFNLSIINDD--LTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHH--HHHHHHTTSCCSEEEECSS--HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHH--HHHHhhcccCCCEEEECCC--HHHHHHHHHHHHH
Confidence 999999999988887652 21 45789999994 5457777776664
No 71
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.89 E-value=9.1e-26 Score=219.32 Aligned_cols=179 Identities=11% Similarity=-0.057 Sum_probs=127.1
Q ss_pred cCcCchhHHHHHhhhcccCCeeeecCCcccCCC-----------------------CCCceeeeeeecccCCCchhHHHH
Q 016817 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM-----------------------DIPPVITILLMGFSGSGKSSLVNL 117 (382)
Q Consensus 61 ~~~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl-----------------------~i~~Ge~~alvGpnGsGKSTLl~~ 117 (382)
...+..|+++||++.|.. +++++++ ++++|+++||+||||||||||+++
T Consensus 38 ~~~~~~i~~~~v~~~y~p--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 38 RGLGEQIDLLEVEEVYLP--------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CCTTCCCCHHHHHHTHHH--------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHH
T ss_pred cCCCCeEEeeehhhhhhh--------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHH
Confidence 345668999999999942 2444443 289999999999999999999999
Q ss_pred HHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcC-ccccccccc
Q 016817 118 MYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEG-VHHNQRCLR 195 (382)
Q Consensus 118 i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~~~ 195 (382)
|+|+++ ..|. ..+++++|++.+++. |+.+|+.... ..+.. ..+.+.+.+
T Consensus 110 L~gll~~~~G~---------------------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~ 160 (312)
T 3aez_A 110 LQALLARWDHH---------------------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMR 160 (312)
T ss_dssp HHHHHHTSTTC---------------------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHH
T ss_pred HHhhccccCCC---------------------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHH
Confidence 999998 5553 168999999988887 9998874321 11111 112244566
Q ss_pred cCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecC
Q 016817 196 SDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 196 ~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd 272 (382)
.++.++ .... +.++.+|||||+|||++|||++.+|+|||+|| .+|+.. ..+.++ .+ .+|+|+|+
T Consensus 161 ~L~~l~-~~~~-~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~-----~D-~~I~V~a~ 227 (312)
T 3aez_A 161 FVTSVK-SGSD-YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDL-----FD-FSLYVDAR 227 (312)
T ss_dssp HHHHHH-TTCS-CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGG-----CS-EEEEEEEC
T ss_pred HHHHhC-CCcc-cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHh-----cC-cEEEEECC
Confidence 777777 4333 37788999999999999999999999999999 666532 123333 23 34777885
Q ss_pred CCCChhhhhhhhhhhhhh
Q 016817 273 DMLSTEERLDARLKICEY 290 (382)
Q Consensus 273 ~~l~~~~~~~d~v~ll~~ 290 (382)
.+. ...+..+|.+.+.+
T Consensus 228 ~~~-~~~R~i~R~~~~rd 244 (312)
T 3aez_A 228 IED-IEQWYVSRFLAMRT 244 (312)
T ss_dssp HHH-HHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHh
Confidence 544 13345666666655
No 72
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.88 E-value=1.3e-25 Score=227.71 Aligned_cols=199 Identities=11% Similarity=-0.020 Sum_probs=144.8
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee---cCCCcc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT---SSGNSS 139 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~---~i~~~~ 139 (382)
.++++++++++.|+.+. . +|+++ |+|.+|++++|+||||||||||+++|+|+.+ ++|.|.++|+ ++.+..
T Consensus 129 ~~~l~~~~v~~~~~tg~-~----vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGV-R----AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFI 202 (438)
T ss_dssp CCTTTSCCCCSBCCCSC-H----HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHH
T ss_pred CCceEEeccceecCCCc-e----EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHH
Confidence 46899999999996432 1 69999 9999999999999999999999999999999 8999999997 321100
Q ss_pred cceeehhhhhhhHhhhccceeeEe-CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYD-SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~-~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq 218 (382)
. .......++ +.++|++|+ ..+++++++.+|+...+..+.. ..+.+..+ + ..+..||+||
T Consensus 203 ~----~~~~~~~l~-r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~---~~~~v~~~---------l--d~l~~lS~g~ 263 (438)
T 2dpy_A 203 E----NILGPDGRA-RSVVIAAPADVSPLLRMQGAAYATRIAEDFRD---RGQHVLLI---------M--DSLTRYAMAQ 263 (438)
T ss_dssp H----TTTHHHHHH-TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT---TTCEEEEE---------E--ECHHHHHHHH
T ss_pred H----hhccccccC-ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh---CCCCHHHH---------H--HhHHHHHHHH
Confidence 0 000012234 389999995 5567789999999776543321 11112111 1 1256789999
Q ss_pred eeecceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccc---cCCC-----CeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 219 LRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRK---CNEN-----PILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 219 kQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~---~~g~-----tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+|| +.+|++ -++||+..+..+.+++.++. + +.|. ||+++|||++ ..++|+++++.+
T Consensus 264 -qrvslA---l~~p~~---t~glD~~~~~~l~~ll~r~~--~~~~~~GsiT~~~tVlv~tHdl~----~~iad~v~~l~d 330 (438)
T 2dpy_A 264 -REIALA---IGEPPA---TKGYPPSVFAKLPALVERAG--NGIHGGGSITAFYTVLTEGDDQQ----DPIADSARAILD 330 (438)
T ss_dssp -HHHHHH---TTCCCC---SSSCCTTHHHHHHHHHTTCS--CCSTTSCEEEEEEEEECSSSCSC----CHHHHHHHHHSS
T ss_pred -HHHHHH---hCCCcc---cccCCHHHHHHHHHHHHHHH--hccCCCCcccceeEEEEeCCCcc----chhhceEEEEeC
Confidence 999999 788887 22999999999999999983 3 2364 9999999665 457888888876
Q ss_pred ---ccccccccee
Q 016817 291 ---LGVSEISGVY 300 (382)
Q Consensus 291 ---~~~~~~~~v~ 300 (382)
+..+.+.++.
T Consensus 331 G~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 331 GHIVLSRRLAEAG 343 (438)
T ss_dssp EEEEECHHHHHTT
T ss_pred cEEEEeCCHHHcc
Confidence 4444444433
No 73
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.88 E-value=7e-26 Score=200.91 Aligned_cols=144 Identities=13% Similarity=0.043 Sum_probs=97.5
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC-CC
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG-FN 168 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l-~~ 168 (382)
|+||++++||+++|+||||||||||+|++.+ |...+.+. ...|+++|++.- +.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-----~~~~~~~d---------------------~~~g~~~~~~~~~~~ 54 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK-----PTEVISSD---------------------FCRGLMSDDENDQTV 54 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC-----GGGEEEHH---------------------HHHHHHCSSTTCGGG
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc-----CCeEEccH---------------------HHHHHhcCcccchhh
Confidence 5799999999999999999999999998542 22222211 022677777521 11
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCC-
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSK- 244 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~- 244 (382)
..++++++...... ....+.... . ......|||||||++||||++.+|++|+||| +||+.
T Consensus 55 ~~~~~~~~~~~~~~--------------~~~~g~~~~-~-~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~ 118 (171)
T 4gp7_A 55 TGAAFDVLHYIVSK--------------RLQLGKLTV-V-DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN 118 (171)
T ss_dssp HHHHHHHHHHHHHH--------------HHHTTCCEE-E-ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHhCCCeEE-E-ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence 12223333211100 001122212 1 2345569999999999999999999999999 99999
Q ss_pred ---------------cchhhhhhccCccccccCCCCeEEEecCCCCChhhh
Q 016817 245 ---------------PLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280 (382)
Q Consensus 245 ---------------~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~ 280 (382)
.+..+.+.|+++ +++|.|+|+||||++. +..
T Consensus 119 ~~R~~~~~~~~vi~~~~~~l~~~l~~l---~~~g~tvi~vtH~~~~--~~~ 164 (171)
T 4gp7_A 119 KNRTDRQVEEYVIRKHTQQMKKSIKGL---QREGFRYVYILNSPEE--VEE 164 (171)
T ss_dssp HTCSSCCCCHHHHHHHHHHHHHHSTTH---HHHTCSEEEEECSHHH--HHH
T ss_pred hcccCCCCCHHHHHHHHHHhhhhhhhH---HhcCCcEEEEeCCHHH--hhh
Confidence 558889999998 3359999999996554 654
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.87 E-value=3e-24 Score=207.78 Aligned_cols=188 Identities=12% Similarity=0.043 Sum_probs=134.9
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
.+.+...++... +++.+||++++|++++|+||||||||||++.|+|+++ ++|+|.++|.++..... ..
T Consensus 77 ~~~l~~~l~~~~------~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a-----~~ 145 (302)
T 3b9q_A 77 KESVLEMLAKKN------SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAA-----SD 145 (302)
T ss_dssp HHHHHHHHCC--------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHH-----HH
T ss_pred HHHHHHHhCCcc------cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhH-----HH
Confidence 445555554322 3568899999999999999999999999999999999 89999999987643211 11
Q ss_pred hhhhHh-hhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee
Q 016817 148 EHNVMR-SLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA 225 (382)
Q Consensus 148 ~~~~~r-~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA 225 (382)
++..++ +..++|++|++. +++..++++|+..... .. ....+++.+|+.+.. ++++.+|| |||++||
T Consensus 146 ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~---~~-----~d~~lldt~gl~~~~-~~~~~eLS---kqr~~ia 213 (302)
T 3b9q_A 146 QLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE---EG-----YDVVLCDTSGRLHTN-YSLMEELI---ACKKAVG 213 (302)
T ss_dssp HHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHH---TT-----CSEEEECCCCCSSCC-HHHHHHHH---HHHHHHH
T ss_pred HHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHH---cC-----CcchHHhcCCCCcch-hHHHHHHH---HHHHHHH
Confidence 222221 237999999988 8999999999975421 11 112467788887554 48999999 9999999
Q ss_pred eeehhHHH--HHHHHh--cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 226 MVVSNIAE--IYKALK--AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 226 raL~~~P~--iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|||+.+|+ +|+||- ++|+..+ ++++. ++.|.|+|++||. +- ..+....+-+...
T Consensus 214 ral~~~P~e~lLvLDptsglD~~~~------~~~~~--~~~g~t~iiiThl-D~--~~~~g~~l~~~~~ 271 (302)
T 3b9q_A 214 KIVSGAPNEILLVLDGNTGLNMLPQ------AREFN--EVVGITGLILTKL-DG--SARGGCVVSVVEE 271 (302)
T ss_dssp TTSTTCCSEEEEEEEGGGGGGGHHH------HHHHH--HHTCCCEEEEECC-SS--CSCTHHHHHHHHH
T ss_pred HhhccCCCeeEEEEeCCCCcCHHHH------HHHHH--HhcCCCEEEEeCC-CC--CCccChheehHHH
Confidence 99999999 999998 8888654 23331 2358999999993 22 4455555555543
No 75
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.86 E-value=1.5e-24 Score=194.19 Aligned_cols=138 Identities=11% Similarity=0.022 Sum_probs=96.8
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEEL 179 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~ 179 (382)
.++|+||||||||||+++|+|++. |.++|.+..+.. .. ..+ +.+||++|++ ++.+++ .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~------~~---~~~-~~ig~~~~~~------~~~~~~--~ 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVR------DP---ETK-KRTGFRIITT------EGKKKI--F 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC----------------CCEEEEEET------TCCEEE--E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhc------cc---ccc-ceeEEEeecC------cHHHHH--H
Confidence 589999999999999999999985 667775321100 00 122 3799999986 222222 0
Q ss_pred HhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee-----ehhHHHHHHHHh-----cCCCCcchhh
Q 016817 180 SSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV-----VSNIAEIYKALK-----AGDSKPLDAT 249 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra-----L~~~P~iLLLDE-----~LD~~~~~~i 249 (382)
. .+ .. .-.+.. ++++.+||||||||++|||| |+.+|++|+||| +||+..+..+
T Consensus 60 ~-~~--~~-------------~~~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l 122 (178)
T 1ye8_A 60 S-SK--FF-------------TSKKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122 (178)
T ss_dssp E-ET--TC-------------CCSSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH
T ss_pred H-hh--cC-------------Cccccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH
Confidence 0 00 00 000233 48899999999999999996 999999999999 7999999888
Q ss_pred hhhccCccccccCCCCeEEEec---CCCCChhhhhhhh
Q 016817 250 KRLFSAPGLRKCNENPILILTH---GDMLSTEERLDAR 284 (382)
Q Consensus 250 ~~~l~~l~~~~~~g~tiIiiTH---d~~l~~~~~~~d~ 284 (382)
.+.+.+ .+.|+|++|| |.++ +..++++
T Consensus 123 ~~~l~~------~~~~~i~~~H~~h~~~~--~~~i~~r 152 (178)
T 1ye8_A 123 RQIMHD------PNVNVVATIPIRDVHPL--VKEIRRL 152 (178)
T ss_dssp HHHHTC------TTSEEEEECCSSCCSHH--HHHHHTC
T ss_pred HHHHhc------CCCeEEEEEccCCCchH--HHHHHhc
Confidence 888876 3667899986 4444 6666665
No 76
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.86 E-value=1.6e-24 Score=224.31 Aligned_cols=188 Identities=15% Similarity=0.027 Sum_probs=136.2
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCC-CCCceeeeeeecccCCCchhHHHH--HHHhhc-ccceeeeEeecCCCccc
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGM-DIPPVITILLMGFSGSGKSSLVNL--MYSVLS-RSGLVLFAQTSSGNSSH 140 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl-~i~~Ge~~alvGpnGsGKSTLl~~--i~Gl~~-~~G~I~i~G~~i~~~~~ 140 (382)
.+++.+++.+ |+.+. ++|+++|| .|++|++++|+||||||||||+++ ++|+++ .+|.|+++|++.
T Consensus 11 ~~~~~~~~~~-~~~g~-----~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~----- 79 (525)
T 1tf7_A 11 NNSEHQAIAK-MRTMI-----EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET----- 79 (525)
T ss_dssp ---CCSSCCE-ECCCC-----TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-----
T ss_pred CCcccccccc-ccCCc-----hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-----
Confidence 3455555543 43332 27999999 999999999999999999999999 789999 899999999852
Q ss_pred ceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceee
Q 016817 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLR 220 (382)
Q Consensus 141 ~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQ 220 (382)
.......+ +.+||+||++...+ |+. ..... ..+...++++.+++.+.+. +.+.+|||||+|
T Consensus 80 -----~~~~~~~~-~~~g~~~q~~~~~~------~l~----~~~~~--~~~~~~~~l~~~~l~~~~~-~~~~~LS~g~~~ 140 (525)
T 1tf7_A 80 -----PQDIIKNA-RSFGWDLAKLVDEG------KLF----ILDAS--PDPEGQEVVGGFDLSALIE-RINYAIQKYRAR 140 (525)
T ss_dssp -----HHHHHHHH-GGGTCCHHHHHHTT------SEE----EEECC--CCSSCCSCCSSHHHHHHHH-HHHHHHHHHTCS
T ss_pred -----HHHHHHHH-HHcCCChHHhhccC------cEE----EEecC--cccchhhhhcccCHHHHHH-HHHHHHHHcCCC
Confidence 11112223 37999999854211 110 00000 1123456788899987654 999999999999
Q ss_pred ecceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCC------h-hhhhhhhhhhhhh
Q 016817 221 RVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLS------T-EERLDARLKICEY 290 (382)
Q Consensus 221 RvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~------~-~~~~~d~v~ll~~ 290 (382)
||.|+.+.+..|. + ++|+..+..++++++.+ ++.|+|||+|||+++.. . +..+||+|++|++
T Consensus 141 ~lilDe~t~~~~~---~--~lD~~~~~~l~~ll~~l---~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 141 RVSIDSVTSVFQQ---Y--DASSVVRRELFRLVARL---KQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEEECSTTTSTT---T--CCHHHHHHHHHHHHHHH---HHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEEECCHHHHHHh---c--CCHHHHHHHHHHHHHHH---HHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 9999988887663 2 78999999999999998 34699999999976551 0 2445999999976
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.86 E-value=4e-24 Score=203.72 Aligned_cols=145 Identities=13% Similarity=0.026 Sum_probs=91.3
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEE 178 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~ 178 (382)
.++|+||||||||||+|+|+|+.. ++|+|.++|+++.... .+ +.+||++|++.+++.+||.+|+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~------------~~-~~i~~v~q~~~~~~~ltv~d~~~~ 70 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTV------------EI-KAIGHVIEEGGVKMKLTVIDTPGF 70 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCC------------SC-CEEEESCC----CCEEEEECCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcce------------ee-eeeEEEeecCCCcCCceEEechhh
Confidence 489999999999999999999999 8999999998653211 11 379999999999999999999854
Q ss_pred HHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccC
Q 016817 179 LSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSA 255 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~ 255 (382)
.. .... ....+.+..+..... .++.+.+|||||||||+||||++. ++++|| +||+.. .+.++.
T Consensus 71 g~-----~~~~-~~~~~~i~~~~~~~~-~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~ 136 (270)
T 3sop_A 71 GD-----QINN-ENCWEPIEKYINEQY-EKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKH 136 (270)
T ss_dssp -C-----CSBC-TTCSHHHHHHHHHHH-HHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHH
T ss_pred hh-----hccc-HHHHHHHHHHHHHHH-HhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHH
Confidence 32 1111 111122222222333 347889999999999999999997 999998 788765 445555
Q ss_pred ccccccCCCCeEEEecCCCC
Q 016817 256 PGLRKCNENPILILTHGDML 275 (382)
Q Consensus 256 l~~~~~~g~tiIiiTHd~~l 275 (382)
+ ++. .++|+|.|..+.
T Consensus 137 L---~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 137 L---SKV-VNIIPVIAKADT 152 (270)
T ss_dssp H---HTT-SEEEEEETTGGG
T ss_pred H---Hhc-CcEEEEEecccc
Confidence 5 223 788888885443
No 78
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=3.6e-24 Score=208.50 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=63.1
Q ss_pred ccccCCCccceeeecceeeeeh----hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVS----NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEER 280 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~----~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~ 280 (382)
++++.+|||||||||+|||||+ .+|++||||| +||+..+..+.+.|+++ . .|.|+|+|||++. +..
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~---~-~~~~vi~~tH~~~---~~~ 286 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN---S-KHTQFIVITHNKI---VME 286 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH---T-TTSEEEEECCCTT---GGG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh---c-CCCeEEEEECCHH---HHh
Confidence 4678899999999999999997 5789999999 99999999999999987 2 4789999999753 345
Q ss_pred hhhhh--hhhh
Q 016817 281 LDARL--KICE 289 (382)
Q Consensus 281 ~~d~v--~ll~ 289 (382)
.||++ +++.
T Consensus 287 ~~d~~~~v~~~ 297 (322)
T 1e69_A 287 AADLLHGVTMV 297 (322)
T ss_dssp GCSEEEEEEES
T ss_pred hCceEEEEEEe
Confidence 67765 4444
No 79
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.85 E-value=7.2e-24 Score=210.13 Aligned_cols=77 Identities=8% Similarity=-0.002 Sum_probs=68.0
Q ss_pred ccccCCCccceeeecceeeeeh------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChh
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVS------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTE 278 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~ 278 (382)
++++.+|||||||||+|||||+ .+|++||||| +||+.++..+++.|+++ .+.|.|||+||||++. +
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l---~~~g~tvi~itH~~~~--~ 348 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL---ERLNKVIVFITHDREF--S 348 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGG---GGSSSEEEEEESCHHH--H
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHH---HhCCCEEEEEecchHH--H
Confidence 3789999999999999999999 6999999999 99999999999999998 4469999999997654 4
Q ss_pred hhhhhhhhhhhh
Q 016817 279 ERLDARLKICEY 290 (382)
Q Consensus 279 ~~~~d~v~ll~~ 290 (382)
..+|+++++++
T Consensus 349 -~~~d~~~~l~~ 359 (365)
T 3qf7_A 349 -EAFDRKLRITG 359 (365)
T ss_dssp -TTCSCEEEEET
T ss_pred -HhCCEEEEEEC
Confidence 45788888765
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.84 E-value=4.3e-23 Score=203.94 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=129.5
Q ss_pred ccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhH-hhhccceeeEeCC-
Q 016817 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVM-RSLQSGFCVYDSR- 165 (382)
Q Consensus 89 ~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~-r~~~ig~v~Q~~~- 165 (382)
..+||++++|++++|+||||||||||++.|+|+++ ++|+|.++|.++..... ..++..+ ++..++|++|++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a-----~eql~~~~~r~~i~~v~q~~~~ 222 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAA-----SDQLEIWAERTGCEIVVAEGDK 222 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHH-----HHHHHHHHHHHTCEEECCSSSS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccch-----hHHHHHHHHhcCeEEEEecccc
Confidence 57899999999999999999999999999999999 89999999987643211 1122222 1237999999988
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHH--HHHHHh--cC
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAE--IYKALK--AG 241 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~--iLLLDE--~L 241 (382)
+++..++++|+..... .. . ...+++.+|+.+.. ++++.+|| +||++|||||+.+|+ +|+||- ++
T Consensus 223 ~~p~~tv~e~l~~~~~---~~--~---d~~lldt~Gl~~~~-~~~~~eLS---kqr~~iaral~~~P~e~lLvLDpttgl 290 (359)
T 2og2_A 223 AKAATVLSKAVKRGKE---EG--Y---DVVLCDTSGRLHTN-YSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGL 290 (359)
T ss_dssp CCHHHHHHHHHHHHHH---TT--C---SEEEEECCCCSSCC-HHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEGGGGG
T ss_pred cChhhhHHHHHHHHHh---CC--C---HHHHHHhcCCChhh-hhHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCCCC
Confidence 8899999999975421 11 1 12456778887554 48899999 999999999999999 999998 88
Q ss_pred CCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 242 DSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 242 D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
|+.++. +++. ++.|.|+|++||. + ...+....+-+..
T Consensus 291 D~~~~~------~~~~--~~~g~t~iiiThl-D--~~~~gG~~lsi~~ 327 (359)
T 2og2_A 291 NMLPQA------REFN--EVVGITGLILTKL-D--GSARGGCVVSVVE 327 (359)
T ss_dssp GGHHHH------HHHH--HHTCCCEEEEESC-T--TCSCTHHHHHHHH
T ss_pred CHHHHH------HHHH--HhcCCeEEEEecC-c--ccccccHHHHHHH
Confidence 887542 2331 2358999999993 2 2445555555544
No 81
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.84 E-value=5.3e-23 Score=192.27 Aligned_cols=150 Identities=10% Similarity=-0.065 Sum_probs=96.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ . .+ +.++|++|+. +
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~-~------------------~~-~~i~~v~~d~-~ 69 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE-Q------------------RQ-RKVVILSQDR-F 69 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC-G------------------GG-CSEEEEEGGG-G
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc-c------------------cC-CceEEEeCCc-C
Confidence 699999999999999999999999999999999987 666554 0 22 3799999995 5
Q ss_pred CChhhhhhhHHHHHhhhhcCccccccccccCcccc-ccccccccccCCCccceeeecceeeeehhHHHHHHHHhcCCCCc
Q 016817 167 FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCAL-MKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKP 245 (382)
Q Consensus 167 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD~~~ 245 (382)
++.+++.+++......+....+.......+.+.++ +.+.. +.++.+||+||+||+++ ++++.+|+++|+|| +|+..
T Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg-~~~~~ 146 (245)
T 2jeo_A 70 YKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGK-TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEG-ILVFY 146 (245)
T ss_dssp BCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSS-CEEECCCSEEEEEC-TTTTT
T ss_pred ccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCC-CeecccccccccCccCc-eEEecCCCEEEEeC-ccccc
Confidence 66678888775432111101111111111222332 33333 37889999999999998 68899999999997 44443
Q ss_pred chhhhhhccCccccccCCCCeEEEecC
Q 016817 246 LDATKRLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 246 ~~~i~~~l~~l~~~~~~g~tiIiiTHd 272 (382)
...+ .++ .+.+|+++||+
T Consensus 147 ~~~l----~~~-----~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQEI----RDM-----FHLRLFVDTDS 164 (245)
T ss_dssp SHHH----HTT-----CSEEEEEECCH
T ss_pred cHHH----HHh-----cCeEEEEECCH
Confidence 3333 333 36799999994
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.83 E-value=3.3e-23 Score=202.72 Aligned_cols=138 Identities=10% Similarity=0.014 Sum_probs=104.3
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhh
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
+++++| | .. +++++||.+++|++++|+||||||||||+++|+|+++ ++|.|+++|.+.....
T Consensus 151 ~~~v~f-y--~~------~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~-------- 213 (330)
T 2pt7_A 151 YNLLDN-K--EQ------AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK-------- 213 (330)
T ss_dssp TTTSTT-H--HH------HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--------
T ss_pred cCchhh-H--HH------HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--------
Confidence 677777 6 22 5999999999999999999999999999999999999 8999999986311000
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV 227 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra 227 (382)
. .+ ..+++++ + |||+||++||||
T Consensus 214 ~---~~-~~i~~~~---------------------------------------------------g--gg~~~r~~la~a 236 (330)
T 2pt7_A 214 H---HK-NYTQLFF---------------------------------------------------G--GNITSADCLKSC 236 (330)
T ss_dssp S---CS-SEEEEEC---------------------------------------------------B--TTBCHHHHHHHH
T ss_pred c---ch-hEEEEEe---------------------------------------------------C--CChhHHHHHHHH
Confidence 0 00 0222211 0 999999999999
Q ss_pred ehhHHHHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 228 VSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 228 L~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|.++|++|++||.-+ .++.+.|+.+ ...+.|+|++||+ .+ +...+|+++++.+
T Consensus 237 L~~~p~ilildE~~~----~e~~~~l~~~---~~g~~tvi~t~H~--~~-~~~~~dri~~l~~ 289 (330)
T 2pt7_A 237 LRMRPDRIILGELRS----SEAYDFYNVL---CSGHKGTLTTLHA--GS-SEEAFIRLANMSS 289 (330)
T ss_dssp TTSCCSEEEECCCCS----THHHHHHHHH---HTTCCCEEEEEEC--SS-HHHHHHHHHHHHH
T ss_pred hhhCCCEEEEcCCCh----HHHHHHHHHH---hcCCCEEEEEEcc--cH-HHHHhhhheehhc
Confidence 999999999999222 3466777776 2223589999995 44 5667899888875
No 83
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.82 E-value=1.6e-22 Score=195.76 Aligned_cols=158 Identities=11% Similarity=-0.031 Sum_probs=120.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhH-hhhccceeeEeCCCCChhhhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVM-RSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~-r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
+|++++|+||||||||||+++|+|+++ ++|+|.++|.++..... ..++..+ ++..++|++|++.++|..++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a-----~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAG-----GTQLSEWGKRLSIPVIQGPEGTDSAALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTT-----THHHHHHHHHHTCCEECCCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhH-----HHHHHHHHHhcCceEEEeCCCCCHHHHHHH
Confidence 699999999999999999999999999 89999999998653221 1222223 1237999999999999999999
Q ss_pred hHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHhcCCCCcchhhhhhcc
Q 016817 175 GLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFS 254 (382)
Q Consensus 175 ni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~ 254 (382)
|+..... .+ . ...+++.+|+.+.. .+.+.+|| +||++||||++.+|+.++| .||+.+...+++.++
T Consensus 176 ~v~~~~~---~~--~---d~~llDt~G~~~~~-~~~~~eLs---~~r~~iaRal~~~P~~~lL--vLDa~t~~~~~~~~~ 241 (304)
T 1rj9_A 176 AVQAMKA---RG--Y---DLLFVDTAGRLHTK-HNLMEELK---KVKRAIAKADPEEPKEVWL--VLDAVTGQNGLEQAK 241 (304)
T ss_dssp HHHHHHH---HT--C---SEEEECCCCCCTTC-HHHHHHHH---HHHHHHHHHCTTCCSEEEE--EEETTBCTHHHHHHH
T ss_pred HHHHHHh---CC--C---CEEEecCCCCCCch-HHHHHHHH---HHHHHHHHhhcCCCCeEEE--EEcHHHHHHHHHHHH
Confidence 9865321 11 0 11245566665433 26677777 7999999999999996666 999999999999998
Q ss_pred CccccccCCCCeEEEecCCCC
Q 016817 255 APGLRKCNENPILILTHGDML 275 (382)
Q Consensus 255 ~l~~~~~~g~tiIiiTHd~~l 275 (382)
++. +..|.|+|++||+...
T Consensus 242 ~~~--~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 242 KFH--EAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHH--HHHCCSEEEEECTTSS
T ss_pred HHH--HHcCCcEEEEECCccc
Confidence 873 4458999999997443
No 84
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.80 E-value=1.2e-22 Score=200.17 Aligned_cols=200 Identities=10% Similarity=0.057 Sum_probs=132.4
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++++++++++.|+.+.+ +|+++ |+|.+|++++|+||||||||||+++|+|+.. +.|.|.+.|++..+.....
T Consensus 43 ~~~i~~~~l~~~~~tg~~-----ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i 116 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVR-----AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFL 116 (347)
T ss_dssp SCSTTCCCCCSEECCSCH-----HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHH
T ss_pred CCCeeecccceecCCCCE-----EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHH
Confidence 358999999999974321 69999 9999999999999999999999999999999 8999999887421110000
Q ss_pred eehhhhhhhHhhhccceeeEeCCC-CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeee
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRG-FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l-~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQR 221 (382)
.. ... ..++ +.+.+++|...- ..+.++..+....+..+.. .-.+++. +. ..+..||+|| ||
T Consensus 117 ~~-~~~-~~~~-~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~------~~~~vl~-------~l-d~~~~lS~g~-r~ 178 (347)
T 2obl_A 117 AL-LPQ-STLS-KCVLVVTTSDRPALERMKAAFTATTIAEYFRD------QGKNVLL-------MM-DSVTRYARAA-RD 178 (347)
T ss_dssp TT-SCH-HHHT-TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT------TTCEEEE-------EE-ETHHHHHHHH-HH
T ss_pred Hh-hhh-hhhh-ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh------ccccHHH-------HH-hhHHHHHHHH-HH
Confidence 00 000 1123 367787774311 1112222222111111100 0011111 12 4578999999 99
Q ss_pred cceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccc-cCCC-----CeEEEecCCCCChhhhhhhhhhhhhh---cc
Q 016817 222 VDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRK-CNEN-----PILILTHGDMLSTEERLDARLKICEY---LG 292 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~-~~g~-----tiIiiTHd~~l~~~~~~~d~v~ll~~---~~ 292 (382)
|++| +.+|++ -+++||.....+.++++++. + +.|. ||+++|||++ ..+||+++++.+ +.
T Consensus 179 v~la---l~~p~~---t~Gldp~~~~~l~~ller~~--~~~~GsiT~~~tVl~~thdl~----~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 179 VGLA---SGEPDV---RGGFPPSVFSSLPKLLERAG--PAPKGSITAIYTVLLESDNVN----DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp HHHH---TTCCCC---BTTBCHHHHHHHHHHHTTCE--ECSSSEEEEEEEEECCSSCCC----CHHHHHHHHHCSEEEEB
T ss_pred HHHH---cCCCCc---ccCCCHHHHHHHHHHHHHHh--CCCCCCeeeEEEEEEeCCCCC----ChhhhheEEeeCcEEEE
Confidence 9999 577777 22999999999999999983 3 4577 9999999765 457888888876 44
Q ss_pred cccccce
Q 016817 293 VSEISGV 299 (382)
Q Consensus 293 ~~~~~~v 299 (382)
.+...+.
T Consensus 247 ~~~l~~~ 253 (347)
T 2obl_A 247 TRELAEE 253 (347)
T ss_dssp CHHHHTT
T ss_pred eCCHHHc
Confidence 4444333
No 85
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.76 E-value=2.3e-21 Score=213.94 Aligned_cols=163 Identities=10% Similarity=-0.011 Sum_probs=116.6
Q ss_pred CchhHHHH-----HhhhcccCCeeeecCCcccCCCCCCc-------eeeeeeecccCCCchhHHHHHHHhhcccceeeeE
Q 016817 64 DGLNELRH-----KFLSYRSGDFWIPIGGIQKGGMDIPP-------VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFA 131 (382)
Q Consensus 64 ~~~i~i~n-----vs~~y~~~~~~v~~~vL~~isl~i~~-------Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~ 131 (382)
.++|+++| |++.|.++. . +++|++|++++ |++++|+||||||||||||+| |++..
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~-~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------- 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDD-F----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------- 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCC-C----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------
T ss_pred CceEEEEeccccEEEEEecCCc-e----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------
Confidence 35789999 999984332 1 69999999987 999999999999999999999 98741
Q ss_pred eecCCCcccceeehhhhhhhHhhhccc-eeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccc
Q 016817 132 QTSSGNSSHTITMYMEEHNVMRSLQSG-FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 132 G~~i~~~~~~~~~~~~~~~~~r~~~ig-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
. .++| ||||++. .+++.+++ +..+|+.+.+. +.
T Consensus 815 ---------------------~-aqiG~~Vpq~~~---~l~v~d~I--------------------~~rig~~d~~~-~~ 848 (1022)
T 2o8b_B 815 ---------------------M-AQMGCYVPAEVC---RLTPIDRV--------------------FTRLGASDRIM-SG 848 (1022)
T ss_dssp ---------------------H-HTTTCCEESSEE---EECCCSBE--------------------EEECC---------
T ss_pred ---------------------H-hheeEEeccCcC---CCCHHHHH--------------------HHHcCCHHHHh-hc
Confidence 1 1566 9999752 35555444 22345554444 55
Q ss_pred cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcc-hhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 211 LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPL-DATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 211 ~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~-~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
.+++|+++++ +++|++++.+|+++|||| |+|+... ..++.+|+.+. ++.|.++|++|||+++ +..+++++.
T Consensus 849 ~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~--~~~g~~vl~~TH~~el--~~~~~d~~~ 923 (1022)
T 2o8b_B 849 ESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELA--ETIKCRTLFSTHYHSL--VEDYSQNVA 923 (1022)
T ss_dssp -CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH--HTSCCEEEEECCCHHH--HHHTSSCSS
T ss_pred hhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHH--hcCCCEEEEEeCCHHH--HHHhCCcce
Confidence 6778888775 999999999999999999 8999874 55788888873 3348999999997766 888899888
Q ss_pred hhhh
Q 016817 287 ICEY 290 (382)
Q Consensus 287 ll~~ 290 (382)
++++
T Consensus 924 v~~g 927 (1022)
T 2o8b_B 924 VRLG 927 (1022)
T ss_dssp EEEE
T ss_pred eecC
Confidence 8765
No 86
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.75 E-value=2e-21 Score=179.78 Aligned_cols=167 Identities=11% Similarity=0.025 Sum_probs=99.8
Q ss_pred cccCCC-CCCceeeeeeecccCCCchhHHHHHH--Hhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 88 IQKGGM-DIPPVITILLMGFSGSGKSSLVNLMY--SVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 88 L~~isl-~i~~Ge~~alvGpnGsGKSTLl~~i~--Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
|+.+-- .|++|++++|+||||||||||+++|+ |+.+ .+|.+++++.... ......+ +.+|+.+|+
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~g~~~~~ 87 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA----------RDLRREM-ASFGWDFEK 87 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH----------HHHHHHH-HTTTCCHHH
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCH----------HHHHHHH-HHcCCChHH
Confidence 555511 78999999999999999999999999 7755 6777888775311 1111122 378999988
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---c
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---A 240 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~ 240 (382)
...++.+++.++..... ... .......+...++.+... +....+| ..+|+++++|| +
T Consensus 88 ~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~-~~~~~l~-------------~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 88 YEKEGKIAIVDGVSSVV-----GLP-SEEKFVLEDRFNVDNFLR-YIYRVVK-------------AINAKRLVIDSIPSI 147 (251)
T ss_dssp HHHTTSEEEEC-------------------------CCHHHHHH-HHHHHHH-------------HTTCSEEEEECHHHH
T ss_pred HhhcCCEEEEEcccccc-----ccc-cccceeccCcccHHHHHH-HHHHHHH-------------hhCCCEEEEccHHHH
Confidence 65555566655442211 000 001111122222222111 2222233 45789999999 5
Q ss_pred CC-----CCcchhhhhhccCccccccCCCCeEEEecCCCCChh---------hhhh-hhhhhhhh
Q 016817 241 GD-----SKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTE---------ERLD-ARLKICEY 290 (382)
Q Consensus 241 LD-----~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~---------~~~~-d~v~ll~~ 290 (382)
+| +..+..+.++++.+ ++.|+|||++||++.. + ..+| |++++++.
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l---~~~g~tii~vtH~~~~--~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTIL---LEMGVTTILTTEAPDP--QHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHH---HHHCCEEEEEECCC------CCSSSSSCGGGGCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHH---HHCCCeEEEEECCCCC--CcccccccChhhEeeeEEEEEee
Confidence 64 44555588888887 4569999999996655 5 5677 99999976
No 87
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.75 E-value=5e-20 Score=174.50 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=99.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEeecCCCcccce
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~~i~~~~~~~ 142 (382)
..++++++++. . +|+++| +++|++++|+||||||||||+++|+|+++ + +|+|.++|.++....
T Consensus 4 ~~~~l~~l~~~----~------vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~--- 68 (261)
T 2eyu_A 4 EIPEFKKLGLP----D------KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF--- 68 (261)
T ss_dssp --CCGGGSSCC----T------HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC---
T ss_pred CCCChHHCCCH----H------HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec---
Confidence 35677787653 2 599999 89999999999999999999999999998 6 999999997432100
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
+ ..+++++|. .+|+.. ..| |+
T Consensus 69 ----------~-~~~~~v~q~-----------------------------------~~gl~~-------~~l------~~ 89 (261)
T 2eyu_A 69 ----------K-HKKSIVNQR-----------------------------------EVGEDT-------KSF------AD 89 (261)
T ss_dssp ----------C-CSSSEEEEE-----------------------------------EBTTTB-------SCH------HH
T ss_pred ----------C-CcceeeeHH-----------------------------------HhCCCH-------HHH------HH
Confidence 0 012222221 122221 112 89
Q ss_pred ceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICE 289 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~ 289 (382)
+||+||..+|++|++||--|+.+...+ ++.. +.|.+|+++||+.+ +..++++++.|.
T Consensus 90 ~la~aL~~~p~illlDEp~D~~~~~~~---l~~~----~~g~~vl~t~H~~~---~~~~~dri~~l~ 146 (261)
T 2eyu_A 90 ALRAALREDPDVIFVGEMRDLETVETA---LRAA----ETGHLVFGTLHTNT---AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHCCSEEEESCCCSHHHHHHH---HHHH----HTTCEEEEEECCSS---HHHHHHHHHHTS
T ss_pred HHHHHHhhCCCEEEeCCCCCHHHHHHH---HHHH----ccCCEEEEEeCcch---HHHHHHHHhhhc
Confidence 999999999999999993377665443 3332 25899999999644 456788888775
No 88
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.74 E-value=1.8e-20 Score=170.16 Aligned_cols=141 Identities=16% Similarity=0.018 Sum_probs=106.2
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCC--Chhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF--NYNRV 172 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~--~~~tv 172 (382)
.++|+++||+||||||||||+++|+|++.+ .++|++|++.++ ..+++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------------------~i~~v~~d~~~~~~~~~~~ 51 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------------------------RVALLPMDHYYKDLGHLPL 51 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------------------GEEEEEGGGCBCCCTTSCH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------------------CeEEEecCccccCcccccH
Confidence 578999999999999999999999998642 256777776655 34566
Q ss_pred hhhHHHHHhhhh-cCccccccccccCccccccccccccccCCCcccee----eecceeeeehhHHHHHHHHh---c----
Q 016817 173 HEGLEELSSWMS-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL----RRVDFAMVVSNIAEIYKALK---A---- 240 (382)
Q Consensus 173 ~eni~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqk----QRvaIAraL~~~P~iLLLDE---~---- 240 (382)
.++.... +. ......+.+.++++.+++.+.+. +++..+|+||+ ||+++|++++.+|+++++|| +
T Consensus 52 ~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~ 127 (211)
T 3asz_A 52 EERLRVN---YDHPDAFDLALYLEHAQALLRGLPVE-MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDL 127 (211)
T ss_dssp HHHHHSC---TTSGGGBCHHHHHHHHHHHHTTCCEE-ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSE
T ss_pred HHhcCCC---CCChhhhhHHHHHHHHHHHHcCCCcC-CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCE
Confidence 6654321 11 11122244556677788876665 77889999974 79999999999999999999 5
Q ss_pred ---CCCCcchhhhhhccCccccccCCCCeEEEecC
Q 016817 241 ---GDSKPLDATKRLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 241 ---LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd 272 (382)
||+.....+.+.+.+.. ++.|.|+++++|+
T Consensus 128 ~i~ld~~~~~~~~r~l~r~~--~~~g~t~~~~~~~ 160 (211)
T 3asz_A 128 KVFVDADADERFIRRLKRDV--LERGRSLEGVVAQ 160 (211)
T ss_dssp EEEEECCHHHHHHHHHHHHH--HHSCCCHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH--HHhCCCHHHHHHH
Confidence 89999999999888752 3468999999993
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.74 E-value=7.4e-21 Score=182.12 Aligned_cols=178 Identities=16% Similarity=0.068 Sum_probs=114.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-eeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+|+++++.+++|++++|+||||||||||++.|+|... .+| .|.+.+.+.. ..+ ++. ++..++++.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~---------~~~---~~~-r~~~~~~~~ 90 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES---------VEE---TAE-DLIGLHNRV 90 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC---------HHH---HHH-HHHHHHTTC
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC---------HHH---HHH-HHHHHHcCC
Confidence 6999999999999999999999999999999999998 668 7876654321 111 222 333333332
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce-eeecceeeeehhHHHHHHHHh--c-
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV-LRRVDFAMVVSNIAEIYKALK--A- 240 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq-kQRvaIAraL~~~P~iLLLDE--~- 240 (382)
. .+..+++.... +. .....+.+.++++..++. +. ..+..+|.+| +||+. |+++..+|++||+|| .
T Consensus 91 ~----~~~~~~l~~~~--~~-~~~~~~~~~~~l~~~~l~--i~-~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 91 R----LRQSDSLKREI--IE-NGKFDQWFDELFGNDTFH--LY-DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp C----GGGCHHHHHHH--HH-HTHHHHHHHHHHSSSCEE--EE-CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred C----hhhccccccCC--CC-HHHHHHHHHHHhccCCEE--EE-CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 1 12222332111 00 000111222333332332 22 3456788888 77777 999999999999999 3
Q ss_pred ------CCC-CcchhhhhhccCccccccCCCCeEEEecCCCCC--------------------hhhhhhhhhhhhhh
Q 016817 241 ------GDS-KPLDATKRLFSAPGLRKCNENPILILTHGDMLS--------------------TEERLDARLKICEY 290 (382)
Q Consensus 241 ------LD~-~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~--------------------~~~~~~d~v~ll~~ 290 (382)
+|. .....+.+.|++++ ++.|+|||++||+.+.+ .+..+||+|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la--~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~ 234 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFA--KSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (296)
T ss_dssp ---------CHHHHHHHHHHHHHH--HHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--HHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec
Confidence 344 44567888888884 45699999999985322 47788999999975
No 90
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=9.2e-21 Score=183.03 Aligned_cols=161 Identities=11% Similarity=-0.045 Sum_probs=84.9
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHh-hc-ccceeeeEeecCCCcccceeehhh
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LS-RSGLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl-~~-~~G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
+||++.|+... ++++++|+| +|+||||||||||+++|+|. .. ++| |.++|.++... .
T Consensus 2 ~~l~~~~~~~~------~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t--------~ 60 (301)
T 2qnr_A 2 SNLPNQVHRKS------VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT--------V 60 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECCEE------EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc--------c
Confidence 57889996543 699999987 99999999999999999997 55 788 88888754210 0
Q ss_pred hhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeee
Q 016817 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMV 227 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAra 227 (382)
-+ ..+++++|...++..++++++..+.... ...+....+.+. +.+.. ++++.++|||||||+.+|||
T Consensus 61 ----~~-~~~~~~~q~~~~~~~ltv~Dt~g~~~~~-----~~~e~~~~l~~~--l~~~~-~~~~~~~sgg~rqrv~~ara 127 (301)
T 2qnr_A 61 ----QI-EASTVEIEERGVKLRLTVVDTPGYGDAI-----NCRDCFKTIISY--IDEQF-ERYLHDESGLNRRHIIDNRV 127 (301)
T ss_dssp ---------CEEEEC---CCEEEEEEEEC----------------CTTHHHH--HHHHH-HHHHHHHTSSCCTTCCCCCC
T ss_pred ----eE-eeEEEEecCCCcccCcchhhhhhhhhhc-----CcHHHHHHHHHH--HHHHH-HHHHHHhCHHhhhhhhhhhh
Confidence 01 2688999987777788999887543211 011111111121 23333 37889999999999999999
Q ss_pred ehhHHHHHHHHh----cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 228 VSNIAEIYKALK----AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 228 L~~~P~iLLLDE----~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
++ +|++|| +||+... +.++++. .+.+.++|+.+||+.
T Consensus 128 ~~----ll~ldePt~~~Ld~~~~----~~l~~l~--~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 128 HC----CFYFISPFGHGLKPLDV----AFMKAIH--NKVNIVPVIAKADTL 168 (301)
T ss_dssp CE----EEEEECSSSSSCCHHHH----HHHHHHT--TTSCEEEEECCGGGS
T ss_pred hh----eeeeecCcccCCCHHHH----HHHHHHH--hcCCEEEEEEeCCCC
Confidence 97 889999 4998763 4555542 234789999999764
No 91
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.73 E-value=1e-19 Score=191.46 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=107.4
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccC----------CCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEe
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKG----------GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQ 132 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~i----------sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G 132 (382)
..++++|+++.|+.+.+++ |+.+ +|+++. +||+||||||||||+++|+|+.. ++|.|+++|
T Consensus 9 ~~i~~~~l~~~~~~~~r~l----l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g 81 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPC----IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP 81 (608)
T ss_dssp -----------CHHHHHHH----HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSC
T ss_pred chhhhhhhhHHHHHHHHHH----HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcC
Confidence 3577888888886432221 3322 466664 99999999999999999999974 599999999
Q ss_pred ecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccC
Q 016817 133 TSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK 212 (382)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 212 (382)
.++.... ......++. .+||+||++.+++..+|.+|+......... .
T Consensus 82 ~~i~~~~------~~~~~~~~~-~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~-----------------~--------- 128 (608)
T 3szr_A 82 LVLKLKK------LVNEDKWRG-KVSYQDYEIEISDASEVEKEINKAQNAIAG-----------------E--------- 128 (608)
T ss_dssp EEEEEEE------CSSSSCCEE-EESCC---CCCCCHHHHHTTHHHHHHHHHC-----------------S---------
T ss_pred EEEEEec------CCcccccee-EEeeecccccCCCHHHHHHHHHHHHHHhcC-----------------C---------
Confidence 8642110 011112343 899999999999999999999764322110 0
Q ss_pred CCccceeeecceeeeehhHHHHHHHHh---------cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 213 SSPKYVLRRVDFAMVVSNIAEIYKALK---------AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 213 ~LSGGqkQRvaIAraL~~~P~iLLLDE---------~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
-.+..++++.++.+....|+++|+|| +||+..+..+.++++++. .+..+.+++++|||++.
T Consensus 129 -~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l-~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 129 -GMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYI-QRQETISLVVVPSNVDI 198 (608)
T ss_dssp -SSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHT-TSSSCCEEEEEESSSCT
T ss_pred -ccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHH-hcCCCCceEEEeccchh
Confidence 01223467788888888999999999 689999999999999863 24457889999998776
No 92
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.71 E-value=3.4e-19 Score=174.53 Aligned_cols=78 Identities=5% Similarity=-0.040 Sum_probs=66.9
Q ss_pred cccccCCCccceee------ecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCCh
Q 016817 207 EIDDLKSSPKYVLR------RVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLST 277 (382)
Q Consensus 207 ~~~~~~~LSGGqkQ------RvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~ 277 (382)
.++++.+||||||| |+++|++|+.+|++||||| +||+..+..+.+.|+++ .+.|.|||+||||.+
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~---~~~~~~vi~~sH~~~--- 315 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY---LKKIPQVILVSHDEE--- 315 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHT---GGGSSEEEEEESCGG---
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEEChHH---
Confidence 34889999999999 6788888889999999999 99999999999999987 335789999999744
Q ss_pred hhhhhhhhhhhhh
Q 016817 278 EERLDARLKICEY 290 (382)
Q Consensus 278 ~~~~~d~v~ll~~ 290 (382)
+..+||+++.++.
T Consensus 316 ~~~~~d~~~~l~~ 328 (339)
T 3qkt_A 316 LKDAADHVIRISL 328 (339)
T ss_dssp GGGGCSEEEEEEE
T ss_pred HHHhCCEEEEEEe
Confidence 4567888888763
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.70 E-value=9e-20 Score=188.69 Aligned_cols=168 Identities=13% Similarity=-0.015 Sum_probs=118.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccC-CCCCCceeeeeeecccCCCchhHHHHHHHhhcccce--eeeEeecCCCcccce
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKG-GMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGL--VLFAQTSSGNSSHTI 142 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~i-sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~--I~i~G~~i~~~~~~~ 142 (382)
.+++++++..|+. |+.+ +..+++|++++|+||||||||||+++++|+....|+ +++.+++
T Consensus 257 ~~~~~~l~~g~~~---------ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee-------- 319 (525)
T 1tf7_A 257 RSSNVRVSSGVVR---------LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE-------- 319 (525)
T ss_dssp CCCCCEECCSCHH---------HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS--------
T ss_pred ccccceeecChHH---------HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC--------
Confidence 3456666665532 3332 559999999999999999999999999999885464 3444432
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
+ ...+..+.. .+ +.. ..+ +...|+.... +.+|.+|||||+||+
T Consensus 320 ---------------------~----~~~l~~~~~----~~--g~~----~~~-~~~~g~~~~~-~~~p~~LS~g~~q~~ 362 (525)
T 1tf7_A 320 ---------------------S----RAQLLRNAY----SW--GMD----FEE-MERQNLLKIV-CAYPESAGLEDHLQI 362 (525)
T ss_dssp ---------------------C----HHHHHHHHH----TT--SCC----HHH-HHHTTSEEEC-CCCGGGSCHHHHHHH
T ss_pred ---------------------C----HHHHHHHHH----Hc--CCC----HHH-HHhCCCEEEE-EeccccCCHHHHHHH
Confidence 1 001111110 00 000 000 1112333333 378899999999999
Q ss_pred ceeeeehhHHHHHHHHh--cCCCC-----cchhhhhhccCccccccCCCCeEEEecCCCC--------Chhhhhhhhhhh
Q 016817 223 DFAMVVSNIAEIYKALK--AGDSK-----PLDATKRLFSAPGLRKCNENPILILTHGDML--------STEERLDARLKI 287 (382)
Q Consensus 223 aIAraL~~~P~iLLLDE--~LD~~-----~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l--------~~~~~~~d~v~l 287 (382)
++|+++..+|++||+|- +||+. .+..+.++++.+ ++.|.|+|+|||+... ..+..+||+|++
T Consensus 363 ~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l---~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 363 IKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYA---KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHH---HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHH---HhCCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999999999 99999 899999999987 4579999999998710 236778999998
Q ss_pred hhh
Q 016817 288 CEY 290 (382)
Q Consensus 288 l~~ 290 (382)
|+.
T Consensus 440 L~~ 442 (525)
T 1tf7_A 440 LQY 442 (525)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 94
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.70 E-value=6.1e-19 Score=157.46 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=106.5
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
|++++|+||||||||||+++|++ +.+|.+.++|.++.. ....|+++|....++..++++++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--~~~g~~~i~~d~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--QLDNSAYIEGDIINH----------------MVVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--HSSSEEEEEHHHHHT----------------TCCTTCCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--ccCCeEEEcccchhh----------------hhccccccCccchhHHHHHHHHHH
Confidence 78999999999999999999987 467889999864311 014677777654445568888886
Q ss_pred HHHhhhhcCccccccccccCccccccccccccccCCC--ccceeeecceee------eehhHHHHHHHHhcCCCCcchhh
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSS--PKYVLRRVDFAM------VVSNIAEIYKALKAGDSKPLDAT 249 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L--SGGqkQRvaIAr------aL~~~P~iLLLDE~LD~~~~~~i 249 (382)
.....+... ... .+++.+... ... +...++ |+|++|++.++. +++.+|+...+|+++|+.....
T Consensus 64 ~~~~~~~~~--~~~---~ild~~~~~-~~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~- 135 (189)
T 2bdt_A 64 DLTVNFLLA--QND---VVLDYIAFP-DEA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL- 135 (189)
T ss_dssp HHHHHHHHT--TCE---EEEESCCCH-HHH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-
T ss_pred HHHHHHHhc--CCc---EEEeeccCH-HHH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-
Confidence 654322111 111 122222111 111 222345 999999999998 7778887777788999988888
Q ss_pred hhhccCccccccCCCCeEEEecCCC-CChhhhhhhhhh
Q 016817 250 KRLFSAPGLRKCNENPILILTHGDM-LSTEERLDARLK 286 (382)
Q Consensus 250 ~~~l~~l~~~~~~g~tiIiiTHd~~-l~~~~~~~d~v~ 286 (382)
++.+..+ .+.+.++|.+|| . ++++.++|++|+
T Consensus 136 ~~~~~~~---~~~~~~ii~tsh--~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 136 VEEFESK---GIDERYFYNTSH--LQPTNLNDIVKNLK 168 (189)
T ss_dssp HHHHHHT---TCCTTSEEECSS--SCGGGHHHHHHHHH
T ss_pred HHHHhhc---CCCccEEEeCCC--CChhhHHHHHHHHh
Confidence 8888776 345789999999 4 455999999998
No 95
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.69 E-value=1.6e-18 Score=152.25 Aligned_cols=116 Identities=16% Similarity=0.035 Sum_probs=84.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehh
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYM 146 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~ 146 (382)
++.+++++.|+... +++++||+|++|++++|+||||||||||+|+|+|+++++|+|.++|.++... +
T Consensus 8 ~~~~~~~~~~g~~~------~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~------~- 74 (158)
T 1htw_A 8 IPDEFSMLRFGKKF------AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEE------Y- 74 (158)
T ss_dssp ECSHHHHHHHHHHH------HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEE------E-
T ss_pred cCCHHHHHHHHHHH------HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeee------c-
Confidence 44578889996432 6999999999999999999999999999999999997789999999865310 0
Q ss_pred hhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccc
Q 016817 147 EEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKN 204 (382)
Q Consensus 147 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 204 (382)
. .-.+++|++.+| .+|+.+|+.+....-.........++.+++..++.+
T Consensus 75 ------~--~~~~~~q~~~l~-~ltv~e~l~~~g~~~~~~~~~~~~ve~~~~~~~l~~ 123 (158)
T 1htw_A 75 ------N--IAGKMIYHFDLY-RLADPEELEFMGIRDYFNTDSICLIEWSEKGQGILP 123 (158)
T ss_dssp ------E--ETTEEEEEEECT-TCSCTTHHHHSTHHHHHSSSCEEEEESGGGGTTTSC
T ss_pred ------c--CCCcceeccccc-cCCcHHHHHHcChHhhcCCCCEEEEECcccccCCCC
Confidence 0 113799999888 799999996543211111122344555566666654
No 96
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.69 E-value=7.5e-19 Score=158.72 Aligned_cols=152 Identities=13% Similarity=0.053 Sum_probs=93.8
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 177 (382)
|++++|+||||||||||+++|+|+++++| |.++|.++... ..++ +.+||++|+. ... .+++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~-----------~~~~-~~ig~~~~~~--~g~---~~~l~ 62 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEV-----------RQGG-RRIGFDVVTL--SGT---RGPLS 62 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEE-----------ETTS-SEEEEEEEET--TSC---EEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchh-----------Hhhh-ceEEEEEEec--ccc---eehhh
Confidence 78999999999999999999999998779 99999865211 1133 3899999985 221 12221
Q ss_pred HHHhhhhcCccccccccccCccccccccccccccCCCccceeeec-ceee---eehhHHHHHHHHh--cCCCCcchhhhh
Q 016817 178 ELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV-DFAM---VVSNIAEIYKALK--AGDSKPLDATKR 251 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv-aIAr---aL~~~P~iLLLDE--~LD~~~~~~i~~ 251 (382)
. +...... ........ ++...+|+|||+++ ++++ |++.+|++||+|| .++.... .+++
T Consensus 63 ~----~~~~~~~----------~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~-~~~~ 126 (189)
T 2i3b_A 63 R----VGLEPPP----------GKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ-LFIQ 126 (189)
T ss_dssp E----CCCCCCS----------SSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCS-HHHH
T ss_pred c----ccccCCc----------cccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccH-HHHH
Confidence 0 0000000 00011222 55667999999998 5565 7899999999999 4432221 2445
Q ss_pred hccCccccccCCCCeEE--Ee--cCCCCChhhhhhhhhhhhhh
Q 016817 252 LFSAPGLRKCNENPILI--LT--HGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 252 ~l~~l~~~~~~g~tiIi--iT--Hd~~l~~~~~~~d~v~ll~~ 290 (382)
.|.++. . ...++|+ ++ ||... .+.++|..+++
T Consensus 127 ~l~~~l--~-~~~~~ilgti~vsh~~~~----~~vd~i~~~~~ 162 (189)
T 2i3b_A 127 AVRQTL--S-TPGTIILGTIPVPKGKPL----ALVEEIRNRKD 162 (189)
T ss_dssp HHHHHH--H-CSSCCEEEECCCCCSSCC----TTHHHHHTTCC
T ss_pred HHHHHH--h-CCCcEEEEEeecCCCCch----HHHHHHeecCC
Confidence 555542 1 2345554 33 95432 45666766654
No 97
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.68 E-value=3.8e-19 Score=158.53 Aligned_cols=157 Identities=11% Similarity=-0.001 Sum_probs=103.6
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
.+++|++++|+||||||||||+++|+|. ...|.|.++|.++..... .+ ..++|++|+.. +..++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~-----------~~-~~~~~~~~~~~--~~~~v~ 69 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIK-----------HG-RIDPWLPQSHQ--QNRMIM 69 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCC-----------SS-CCCTTSSSHHH--HHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhh-----------cc-cccCCccchhh--hhHHHH
Confidence 5789999999999999999999999997 568999998864321100 01 24688888653 457888
Q ss_pred hhHHHHHhhhhcCccccccccccCcccccccccc-ccccCCCccceeeecceeeeehhHHHHHHHHhcCCCCcchhhhhh
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAE-IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRL 252 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~ 252 (382)
+|+.......... .....+..++..+++..... +..+..+|+|++||+++||++..+|+++ +|+.....+.+.
T Consensus 70 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l-----ld~~~~~~~~~~ 143 (191)
T 1zp6_A 70 QIAADVAGRYAKE-GYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL-----SDPLVVADLHSQ 143 (191)
T ss_dssp HHHHHHHHHHHHT-SCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc-----CCHHHHHHHHHH
Confidence 8886543222111 11122333444444442211 2456789999999999999999998766 466667778888
Q ss_pred ccCccccccCCCCeEEEecCCCC
Q 016817 253 FSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 253 l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+..+. ..+ .+++.|++...
T Consensus 144 ~~~l~---~~~-~~~i~t~~~~~ 162 (191)
T 1zp6_A 144 FADLG---AFE-HHVLPVSGKDT 162 (191)
T ss_dssp TTCCG---GGG-GGEEECTTCCT
T ss_pred HhccC---ccc-ccEEECCCCCH
Confidence 88762 223 45566664343
No 98
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.67 E-value=1.3e-19 Score=179.07 Aligned_cols=168 Identities=17% Similarity=0.100 Sum_probs=117.5
Q ss_pred cccCCCCCCc--eeeeeeecccCCCchhHHHHHHHhhc-cc----ceeeeEe----ecCCCcccceeehhhhhhhHhhhc
Q 016817 88 IQKGGMDIPP--VITILLMGFSGSGKSSLVNLMYSVLS-RS----GLVLFAQ----TSSGNSSHTITMYMEEHNVMRSLQ 156 (382)
Q Consensus 88 L~~isl~i~~--Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~----G~I~i~G----~~i~~~~~~~~~~~~~~~~~r~~~ 156 (382)
.+.|+++|.+ |+.++|+||||||||||+++|+|+++ ++ |+|++++ .++ . ....+ + . .
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~------~~~~~---~-~-~ 225 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-A------MQYSD---Y-P-Q 225 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-S------SCTTT---H-H-H
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-c------CChhH---H-H-H
Confidence 6789999999 99999999999999999999999999 78 9998753 221 0 01111 2 2 4
Q ss_pred cceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh-hHHHHH
Q 016817 157 SGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS-NIAEIY 235 (382)
Q Consensus 157 ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~-~~P~iL 235 (382)
|++++|++.+|. .++.+|+.+ ++ .+.. +..+..+|+|++||..+++++. .+|+++
T Consensus 226 I~~~~q~~~~~~-~t~~~nl~~---------------------~~-~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 226 MALGHQRYIDYA-VRHSHKIAF---------------------ID-TDFI-TTQAFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHHHHHHHHHH-HHHCSSEEE---------------------ES-SCHH-HHHHHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHHHHHHHHHH-HhccCCEEE---------------------Ee-CCch-HHHHHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 777777654332 444444310 00 1111 2345567788888988887764 589999
Q ss_pred HHHh------------cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh-cccccc
Q 016817 236 KALK------------AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY-LGVSEI 296 (382)
Q Consensus 236 LLDE------------~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~-~~~~~~ 296 (382)
+||| ++|+..+..+.+.|+++. ++.|.++|+++|. .+..++++++.+++. +..+..
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~--~~~~~~ililde~---~~~~r~~~~i~~i~~~l~~~~~ 350 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLL--DKYKVPYIEIESP---SYLDRYNQVKAVIEKVLNEEEI 350 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHH--HGGGCCCEEEECS---SHHHHHHHHHHHHHHHTSCCCC
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHH--HHcCCCEEEeCCC---CHHHHHHHHHHHHHHHhcccch
Confidence 9985 589999999999998873 3458999999983 347789999999988 544443
No 99
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.66 E-value=8.4e-19 Score=189.50 Aligned_cols=87 Identities=10% Similarity=-0.068 Sum_probs=75.2
Q ss_pred cCccccccccccccccCCCccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEe
Q 016817 196 SDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILT 270 (382)
Q Consensus 196 ~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiT 270 (382)
.+..+||.....++++.+|||||+|||+||++|+.+| .+||||| +||+.....++++|+++ ++.|.|||+|+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L---~~~G~TVIvVe 438 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL---KRGGNSLFVVE 438 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH---HTTTCEEEEEC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHH---HHcCCEEEEEc
Confidence 4567788744235999999999999999999999999 5999999 99999999999999998 55799999999
Q ss_pred cCCCCChhhhhhhhhhhh
Q 016817 271 HGDMLSTEERLDARLKIC 288 (382)
Q Consensus 271 Hd~~l~~~~~~~d~v~ll 288 (382)
||+++ +. .||+|++|
T Consensus 439 Hdl~~--l~-~aD~ii~l 453 (842)
T 2vf7_A 439 HDLDV--IR-RADWLVDV 453 (842)
T ss_dssp CCHHH--HT-TCSEEEEE
T ss_pred CCHHH--HH-hCCEEEEe
Confidence 97654 54 68999888
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.65 E-value=8.2e-19 Score=191.24 Aligned_cols=138 Identities=8% Similarity=-0.052 Sum_probs=96.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+++|+||++++|++++|+||||||||||||+|+++.- . .| .+++++.
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g-------------------------------~~vpa~~ 710 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG-------------------------------SYVPAEE 710 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT-------------------------------CCBSSSE
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC-------------------------------ccccchh
Confidence 6899999999999999999999999999999987642 1 11 1222111
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
.. . ..+.+++..+|+.+.+. +.++++|+||+|++.|+++ +.+|+++|||| |+
T Consensus 711 ~~---i--------------------~~~d~i~~~ig~~d~l~-~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~Gl 765 (918)
T 3thx_B 711 AT---I--------------------GIVDGIFTRMGAADNIY-KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGT 765 (918)
T ss_dssp EE---E--------------------ECCSEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTS
T ss_pred hh---h--------------------hHHHHHHHhCChHHHHH-HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCC
Confidence 00 0 01123445566665555 7788999999999999998 89999999999 99
Q ss_pred CCCcchhhh-hhccCccccccCCCCeEEEecCCCCChhhhhhhhh
Q 016817 242 DSKPLDATK-RLFSAPGLRKCNENPILILTHGDMLSTEERLDARL 285 (382)
Q Consensus 242 D~~~~~~i~-~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v 285 (382)
|+.....+. .+++.+. ++.|.|+|++|||+++ + .++++.
T Consensus 766 D~~~~~~i~~~il~~L~--~~~g~tvl~vTH~~el--~-~l~~~~ 805 (918)
T 3thx_B 766 STHDGIAIAYATLEYFI--RDVKSLTLFVTHYPPV--C-ELEKNY 805 (918)
T ss_dssp CHHHHHHHHHHHHHHHH--HTTCCEEEEECSCGGG--G-GHHHHT
T ss_pred CHHHHHHHHHHHHHHHH--HhcCCeEEEEeCcHHH--H-HHHhhc
Confidence 999988887 6677662 3468999999998766 4 356654
No 101
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.62 E-value=4.5e-18 Score=185.87 Aligned_cols=141 Identities=10% Similarity=-0.012 Sum_probs=98.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+++|++|++++|++++|+||||||||||+|+++++.- ..| +|+|++.
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G-------------------------------~~vpa~~ 699 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG-------------------------------CFVPCES 699 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT-------------------------------CCBSEEE
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC-------------------------------Ccccccc
Confidence 6889999999999999999999999999999976532 122 2333331
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee--hhHHHHHHHHh---
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV--SNIAEIYKALK--- 239 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL--~~~P~iLLLDE--- 239 (382)
..+ ..+.+++..+|+.+. ....+|+|+++++.+|+++ +.+|+++||||
T Consensus 700 ~~~-----------------------~~~d~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~ 752 (934)
T 3thx_A 700 AEV-----------------------SIVDCILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIIIDELGR 752 (934)
T ss_dssp EEE-----------------------ECCSEEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSC
T ss_pred ccc-----------------------hHHHHHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCC
Confidence 100 011234455565533 3456777777777778777 89999999999
Q ss_pred cCCCCcchhh-hhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 240 AGDSKPLDAT-KRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 240 ~LD~~~~~~i-~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+|+.....+ +.+++.+. ++.|.|+|++|||.++ + .+++++..+++
T Consensus 753 GlD~~~~~~i~~~il~~l~--~~~g~~vl~aTH~~el--~-~lad~~~~v~n 799 (934)
T 3thx_A 753 GTSTYDGFGLAWAISEYIA--TKIGAFCMFATHFHEL--T-ALANQIPTVNN 799 (934)
T ss_dssp SSCHHHHHHHHHHHHHHHH--HTTCCEEEEEESCGGG--G-GGGGTCTTEEE
T ss_pred CCCHHHHHHHHHHHHHHHH--hcCCCEEEEEcCcHHH--H-HHhcccceeEe
Confidence 9999988887 66667662 3358999999997665 4 47888877776
No 102
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.62 E-value=2.6e-18 Score=156.55 Aligned_cols=166 Identities=9% Similarity=-0.148 Sum_probs=110.8
Q ss_pred CcccCCC-CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGM-DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl-~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
.|+++.. .+++|++++|+||||||||||++.|++... ..|.|.+.+.+.. ..+..... ..+++.+|+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---------~~~~~~~~-~~~~~~~~~~ 80 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---------RDSIIRQA-KQFNWDFEEY 80 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---------HHHHHHHH-HHTTCCCGGG
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---------HHHHHHHH-HHhcchHHHH
Confidence 4888888 899999999999999999999999999887 7889988776321 11111111 1355544432
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHH--HHHHHh---
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAE--IYKALK--- 239 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~--iLLLDE--- 239 (382)
... .+. .+.......+ .... ....|.++.++...+.+...+|+ +|++||
T Consensus 81 ~~~-~~~--------------------~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 81 IEK-KLI--------------------IIDALMKEKE-DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp BTT-TEE--------------------EEECCC-----CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred hhC-CEE--------------------EEeccccccC-ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 110 010 0111111111 1111 12348888888877777777899 999999
Q ss_pred cC--CCCcchhhhhhccCccccccCCCCeEEEecCCCC------Chhhhhhhhhhhhhh
Q 016817 240 AG--DSKPLDATKRLFSAPGLRKCNENPILILTHGDML------STEERLDARLKICEY 290 (382)
Q Consensus 240 ~L--D~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l------~~~~~~~d~v~ll~~ 290 (382)
.+ |+.....+++.|++++ ++.|.|||++||+.+. ..+..+||++++++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~--~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVL--NKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHH--HHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHH--HhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 45 9888899999999884 4568999999997732 337788999999976
No 103
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.61 E-value=7.3e-19 Score=160.55 Aligned_cols=145 Identities=10% Similarity=0.000 Sum_probs=88.3
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-c--cc-----eeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-R--SG-----LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~--~G-----~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
-|++|++++|+||||||||||+++|+|+.. + +| .|++++.+.. +...+++++|+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~----------------~~~~i~~~~~~~~ 84 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----------------RPERIREIAQNRG 84 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC----------------CHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC----------------CHHHHHHHHHHcC
Confidence 688999999999999999999999999764 3 23 6666665310 0125667778776
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee-------hhHHHHHHHH
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV-------SNIAEIYKAL 238 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL-------~~~P~iLLLD 238 (382)
+++. ++.+|+.+.. .... +.+++.+..++++ ..+|+++++|
T Consensus 85 ~~~~-~~~~~~~~~~-----~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~llilD 132 (231)
T 4a74_A 85 LDPD-EVLKHIYVAR-----AFNS--------------------------NHQMLLVQQAEDKIKELLNTDRPVKLLIVD 132 (231)
T ss_dssp SCHH-HHHHTEEEEE-----CCSH--------------------------HHHHHHHHHHHHHHHHHTTSSSCEEEEEEE
T ss_pred CCHH-HHhhcEEEEe-----cCCh--------------------------HHHHHHHHHHHHHHHHhcccCCceeEEEEC
Confidence 6664 6666652110 0000 0011111111222 2478899999
Q ss_pred h---cCCCCc------------chhhhhhccCccccccCCCCeEEEec----CCCCChhhhhhhhhhhhhh
Q 016817 239 K---AGDSKP------------LDATKRLFSAPGLRKCNENPILILTH----GDMLSTEERLDARLKICEY 290 (382)
Q Consensus 239 E---~LD~~~------------~~~i~~~l~~l~~~~~~g~tiIiiTH----d~~l~~~~~~~d~v~ll~~ 290 (382)
| .+|+.. ...+++.|.+++ ++.|+|||+||| +... +..++|+++++++
T Consensus 133 e~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~--~~~g~tvi~vtH~~~~~g~~--~~~~~d~~l~l~~ 199 (231)
T 4a74_A 133 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA--NLYDIAVFVTNQVQANGGHI--LAHSATLRVYLRK 199 (231)
T ss_dssp TSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHH--HHHTCEEEEEEECC-----------CCSEEEEEEE
T ss_pred ChHHHhccccCCCcchhHHHHHHHHHHHHHHHHH--HHCCCeEEEEeecccCcchh--hHhhceEEEEEEe
Confidence 9 566632 226777777763 456999999999 3333 6677888888865
No 104
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.61 E-value=2.4e-17 Score=168.16 Aligned_cols=178 Identities=10% Similarity=0.066 Sum_probs=118.3
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhH-hhhccceeeEeCC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVM-RSLQSGFCVYDSR 165 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~-r~~~ig~v~Q~~~ 165 (382)
-+++||++++|++++|+||||||||||+++|+|++. .+|+|.++|.++.... ...++..+ +++.++|++|++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~a-----a~eQL~~~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA-----AVEQLQVWGQRNNIPVIAQHTG 357 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHH-----HHHHHHHHHHHHTCCEECCSTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchh-----hHHHHHHHHHhcCceEEecccC
Confidence 568999999999999999999999999999999999 8999999987653211 11122222 2248999999988
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh-hHHHHHHHHhcCCCC
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS-NIAEIYKALKAGDSK 244 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~-~~P~iLLLDE~LD~~ 244 (382)
+++..++++|+.+... .+. . .-+++.+|...... .++.+|| |++.++|++. ..|.-.+| -||+.
T Consensus 358 ~~p~~tV~e~l~~a~~---~~~---D--vVLIDTaGrl~~~~-~lm~EL~----kiv~iar~l~~~~P~evLL--vLDat 422 (503)
T 2yhs_A 358 ADSASVIFDAIQAAKA---RNI---D--VLIADTAGRLQNKS-HLMEELK----KIVRVMKKLDVEAPHEVML--TIDAS 422 (503)
T ss_dssp CCHHHHHHHHHHHHHH---TTC---S--EEEECCCCSCCCHH-HHHHHHH----HHHHHHHTTCTTCSSEEEE--EEEGG
T ss_pred cCHHHHHHHHHHHHHh---cCC---C--EEEEeCCCccchhh-hHHHHHH----HHHHHHHHhccCCCCeeEE--EecCc
Confidence 8888999999975431 111 1 11356666543222 3445665 7888888653 34531111 45555
Q ss_pred cchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 245 PLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 245 ~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+....++.++.+. ...+.|.+++|| ++...+....+-++..
T Consensus 423 tGq~al~~ak~f~--~~~~itgvIlTK---LD~takgG~~lsi~~~ 463 (503)
T 2yhs_A 423 TGQNAVSQAKLFH--EAVGLTGITLTK---LDGTAKGGVIFSVADQ 463 (503)
T ss_dssp GTHHHHHHHHHHH--HHTCCSEEEEEC---GGGCSCCTHHHHHHHH
T ss_pred ccHHHHHHHHHHH--hhcCCCEEEEEc---CCCcccccHHHHHHHH
Confidence 5555566666652 345899999999 2234455566656543
No 105
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.61 E-value=9.5e-18 Score=162.99 Aligned_cols=161 Identities=16% Similarity=0.072 Sum_probs=108.7
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh--------c-ccceeeeEeecCCCcccce-eehh-----hhhhhHhhhcccee--
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL--------S-RSGLVLFAQTSSGNSSHTI-TMYM-----EEHNVMRSLQSGFC-- 160 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~--------~-~~G~I~i~G~~i~~~~~~~-~~~~-----~~~~~~r~~~ig~v-- 160 (382)
=++++|+|+||||||||+|.|.|+. . +.|+|.+||.++....... .+.. .....++. .++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~-~l~~l~~ 82 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELED-ALLDLLD 82 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHH-HHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHH-HHHHHHh
Confidence 4689999999999999999999996 5 7999999999775432110 0000 00112333 57777
Q ss_pred -eEeCCCCChhhhhhhHHHHH-----hhh-h-cCccccccccccCccccccccccccccCCCccceeeecceeeeehhHH
Q 016817 161 -VYDSRGFNYNRVHEGLEELS-----SWM-S-EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA 232 (382)
Q Consensus 161 -~Q~~~l~~~~tv~eni~~~~-----~~~-~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P 232 (382)
+|++.+++..++.||..... ..+ . ........+..++..+++.+... +. .+||+||+||+..+++++.+|
T Consensus 83 ~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~-~~-~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE-QM-NQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHH-HH-HHCHHHHHHHHTCSEEEEECT
T ss_pred HHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHH-HH-hhchHHHHHHHhCCEEEEECc
Confidence 67766655677777664210 011 0 01111234556677777765433 33 489999999999999999999
Q ss_pred HHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCC
Q 016817 233 EIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGD 273 (382)
Q Consensus 233 ~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~ 273 (382)
+++ ||. ..+.+.|+++ . .+.||+++||+.
T Consensus 161 dl~--de~------~~l~~~l~~l---~-~~~~ii~~sh~~ 189 (318)
T 1nij_A 161 DVA--GEA------EKLHERLARI---N-ARAPVYTVTHGD 189 (318)
T ss_dssp TTC--SCT------HHHHHHHHHH---C-SSSCEEECCSSC
T ss_pred ccC--CHH------HHHHHHHHHh---C-CCCeEEEecccC
Confidence 876 653 7888888887 2 578999999963
No 106
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.60 E-value=2.5e-18 Score=169.88 Aligned_cols=71 Identities=11% Similarity=-0.145 Sum_probs=61.3
Q ss_pred ccccC-CCccceeeecceeeeeh---------hHHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCC
Q 016817 208 IDDLK-SSPKYVLRRVDFAMVVS---------NIAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 208 ~~~~~-~LSGGqkQRvaIAraL~---------~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
++++. .||||||||++||++|+ .+|+|||||| +||+..+..+++.|.++ . .|+|++||+ +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~-----~-qt~i~~th~-~ 331 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV-----P-QAIVTGTEL-A 331 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS-----S-EEEEEESSC-C
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc-----C-cEEEEEEec-c
Confidence 46676 79999999999999999 7999999999 99999999999999886 2 699999992 2
Q ss_pred CChhhhhhhhhhhhhh
Q 016817 275 LSTEERLDARLKICEY 290 (382)
Q Consensus 275 l~~~~~~~d~v~ll~~ 290 (382)
. .+++++++++
T Consensus 332 ~-----~~~~i~~l~~ 342 (359)
T 2o5v_A 332 P-----GAALTLRAQA 342 (359)
T ss_dssp T-----TCSEEEEEET
T ss_pred c-----cCCEEEEEEC
Confidence 1 6788887765
No 107
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.60 E-value=6.7e-17 Score=143.70 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=66.0
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccceeehhhhhhhHhhhccc----eeeEeCCCCChh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG----FCVYDSRGFNYN 170 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig----~v~Q~~~l~~~~ 170 (382)
++++|+||||||||||+++|+|+++ + .|.|.++|.++.+... .....+|.+.+| ++.|++.+|-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~------~~~d~~r~~~ig~~~~~~~~~~~~~i~~ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDK------EGKDSWKIYNSGADVVIASPVKLAFIRR 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------------CHHHHHHHHTCEEEEECSSEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCc------cchhHHHHHhcCCceEEECCCcEEEEec
Confidence 5799999999999999999999998 6 8999999987543321 011224423577 677776554100
Q ss_pred hhhhhHHHHHhhhhcCccccccccccCcc-c-cccccccccccCCCccceeeecceeeeehhHHHHH
Q 016817 171 RVHEGLEELSSWMSEGVHHNQRCLRSDDC-A-LMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIY 235 (382)
Q Consensus 171 tv~eni~~~~~~~~~~~~~~~~~~~~l~~-~-~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iL 235 (382)
. .+.. ...+.+.++. + +++. .....|||||+||++||||++.+|++.
T Consensus 77 ~-~~~~-------------~a~l~~~i~~~l~g~dt----~i~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 V-SEEE-------------GNDLDWIYERYLSDYDL----VITEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp C-CHHH-------------HTCHHHHHHHHTTTCSE----EEEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred C-Chhh-------------hhCHHHHHHhhCCCCCE----EEECCcCCCCCcEEEEEecccCCCccC
Confidence 0 0000 0011111111 1 2221 222359999999999999999999874
No 108
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.60 E-value=2.7e-17 Score=165.55 Aligned_cols=151 Identities=11% Similarity=0.017 Sum_probs=100.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
.++++++++.|+... +|+++ +. .+|++++|+||||||||||+++|+|+++ ++|+|.+.|.++.......
T Consensus 143 ~~~l~~Lg~~~~~~~------~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~-- 212 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD------NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGI-- 212 (418)
T ss_dssp CCCGGGSCCCHHHHH------HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSS--
T ss_pred CCCHHHcCCCHHHHH------HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCc--
Confidence 567888888775432 58888 54 7899999999999999999999999998 8999999998763211000
Q ss_pred hhhhhhhHhhhccceee---------EeCCCC--C----hhhhhhhHHHHHhhhh--cC--ccccccccccCcccccccc
Q 016817 145 YMEEHNVMRSLQSGFCV---------YDSRGF--N----YNRVHEGLEELSSWMS--EG--VHHNQRCLRSDDCALMKND 205 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~---------Q~~~l~--~----~~tv~eni~~~~~~~~--~~--~~~~~~~~~~l~~~~L~~~ 205 (382)
.+ ..++. .+|+.| |++..+ + ..|+.+++........ .. ......+...+..+++...
T Consensus 213 --~q-~~v~~-~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~ 288 (418)
T 1p9r_A 213 --GQ-TQVNP-RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF 288 (418)
T ss_dssp --EE-EECBG-GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH
T ss_pred --ce-EEEcc-ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH
Confidence 00 00122 455555 877542 3 2678887765321100 00 0111122223556677643
Q ss_pred ccccccCCCccceeeecceeeeehhHHHHH
Q 016817 206 AEIDDLKSSPKYVLRRVDFAMVVSNIAEIY 235 (382)
Q Consensus 206 ~~~~~~~~LSGGqkQRvaIAraL~~~P~iL 235 (382)
..+.+|||||+|| |||+|+.+|++.
T Consensus 289 ---~~~~~LSgg~~QR--LaraL~~~p~~~ 313 (418)
T 1p9r_A 289 ---LISSSLLGVLAQR--LVRTLCPDCKEP 313 (418)
T ss_dssp ---HHHHHEEEEEEEE--EEEEECTTTCEE
T ss_pred ---HHHHHHHHHHHHH--hhhhhcCCCCcc
Confidence 4678999999999 999999999875
No 109
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=5.3e-19 Score=159.35 Aligned_cols=175 Identities=9% Similarity=-0.015 Sum_probs=93.2
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh-----c-ccceeeeEee------
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL-----S-RSGLVLFAQT------ 133 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~-----~-~~G~I~i~G~------ 133 (382)
+++++|++|.|+. . ++++ |.+++|..++|+|+||||||||+|.|+|.. . +.|.+.+.+.
T Consensus 3 ~l~~~~~~~~~~~-~------~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~ 73 (210)
T 1pui_A 3 NLNYQQTHFVMSA-P------DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG 73 (210)
T ss_dssp --------CEEEE-S------SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT
T ss_pred chhhhhhhheeec-C------CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCC
Confidence 5899999999962 2 5888 999999999999999999999999999987 5 5787765432
Q ss_pred -cCCCcccce--eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccc
Q 016817 134 -SSGNSSHTI--TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDD 210 (382)
Q Consensus 134 -~i~~~~~~~--~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 210 (382)
.+.+.+... .........+++ .+++++|....++...+..++.. .....++.+.++++..++...+-..+
T Consensus 74 ~~l~Dt~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~v~nK 146 (210)
T 1pui_A 74 KRLVDLPGYGYAEVPEEMKRKWQR-ALGEYLEKRQSLQGLVVLMDIRH------PLKDLDQQMIEWAVDSNIAVLVLLTK 146 (210)
T ss_dssp EEEEECCCCC------CCHHHHHH-HHHHHHHHCTTEEEEEEEEETTS------CCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEECcCCcccccCHHHHHHHHH-HHHHHHHhhhcccEEEEEEECCC------CCchhHHHHHHHHHHcCCCeEEEEec
Confidence 110000000 000000011111 22333332111111111111100 00000011222233334433221256
Q ss_pred cCCCccceeee-cceeeeehhHHHHHHHHh---cCCCCcchhhhhhccCc
Q 016817 211 LKSSPKYVLRR-VDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSAP 256 (382)
Q Consensus 211 ~~~LSGGqkQR-vaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l 256 (382)
+..+|+||+|| +..|++++.+|+++++|| ++|+.+...+++.|.++
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 78899999999 899999999999888999 99999999999999887
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.60 E-value=7.2e-17 Score=159.33 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=87.5
Q ss_pred CcccCCC-------CCCceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEeecCCCcccceeehhhhhhhHhhhcc
Q 016817 87 GIQKGGM-------DIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQS 157 (382)
Q Consensus 87 vL~~isl-------~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~i 157 (382)
.|+++.+ .+.+|++++|+||||||||||+++|+|+++ + .|.|...+.++ +.. .+ ...
T Consensus 105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~------------~~-~~~ 170 (356)
T 3jvv_A 105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV------------HE-SKK 170 (356)
T ss_dssp CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC------------CC-CSS
T ss_pred CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh------------hh-ccc
Confidence 4777776 567888999999999999999999999998 5 56665444322 111 01 134
Q ss_pred ceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHH
Q 016817 158 GFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKA 237 (382)
Q Consensus 158 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLL 237 (382)
+++.|........+ +. . +||+||.++|++|++
T Consensus 171 ~~v~q~~~~~~~~~----------------------------------~~-~-------------~La~aL~~~Pdvill 202 (356)
T 3jvv_A 171 CLVNQREVHRDTLG----------------------------------FS-E-------------ALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEEBTTTBSC----------------------------------HH-H-------------HHHHHTTSCCSEEEE
T ss_pred cceeeeeeccccCC----------------------------------HH-H-------------HHHHHhhhCcCEEec
Confidence 55555432111000 00 0 999999999999999
Q ss_pred HhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhh
Q 016817 238 LKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 238 DE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll 288 (382)
||--|+++ .+.+.++ .+.|.|||+++|+.+. + .+++|++.|
T Consensus 203 DEp~d~e~----~~~~~~~---~~~G~~vl~t~H~~~~--~-~~~dRli~l 243 (356)
T 3jvv_A 203 GEMRDLET----IRLALTA---AETGHLVFGTLHTTSA--A-KTIDRVVDV 243 (356)
T ss_dssp SCCCSHHH----HHHHHHH---HHTTCEEEEEESCSSH--H-HHHHHHHHT
T ss_pred CCCCCHHH----HHHHHHH---HhcCCEEEEEEccChH--H-HHHHHHhhh
Confidence 99435433 3333333 2369999999996554 6 678888877
No 111
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.58 E-value=6e-18 Score=181.72 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=91.4
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+++|+||+ |++++|+||||||||||+|+|+|+.. ..|.+.-. .+ ..+|+++|
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa--------------------~~-~~i~~v~~-- 621 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA--------------------EE-AHLPLFDG-- 621 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS--------------------SE-EEECCCSE--
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh--------------------hc-cceeeHHH--
Confidence 68899999 99999999999999999999999974 57765310 01 26788776
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeee--hhHHHHHHHHh---
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVV--SNIAEIYKALK--- 239 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL--~~~P~iLLLDE--- 239 (382)
+|+.+++.+|+. ..+|+|++|++.+|+++ +.+|+++||||
T Consensus 622 -i~~~~~~~d~l~----------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 622 -IYTRIGASDDLA----------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp -EEEECCC----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred -hhccCCHHHHHH----------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 345455554441 23588999999999999 99999999999
Q ss_pred ---cCCCCcc-hhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 240 ---AGDSKPL-DATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 240 ---~LD~~~~-~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+||+... ..+.+.|.+ .|.|+|++|||.++
T Consensus 667 GTs~lD~~~~~~~i~~~L~~------~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE------RRAYTLFATHYFEL 700 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH------HTCEEEEECCCHHH
T ss_pred CCCCcCHHHHHHHHHHHHHh------CCCEEEEEeCCHHH
Confidence 4787664 456666653 47899999997655
No 112
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.56 E-value=1.7e-17 Score=153.14 Aligned_cols=130 Identities=13% Similarity=0.019 Sum_probs=83.0
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
++.-.-..++|++++|+||||||||||+++|+|+++ .+|.|.+.+++.... .+ ..++|+||++
T Consensus 6 ~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-------------e~-~gi~y~fq~~ 71 (219)
T 1s96_A 6 IHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-------------EV-HGEHYFFVNH 71 (219)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-------------CC-BTTTBEECCH
T ss_pred cccccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-------------cc-cCceEEECCH
Confidence 334455788999999999999999999999999987 379999888643210 12 3799999987
Q ss_pred CCCChhhh----hhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHhc
Q 016817 165 RGFNYNRV----HEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240 (382)
Q Consensus 165 ~l~~~~tv----~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~ 240 (382)
.+|+.+++ .|++.+. + .+.|-.+++ ++.++..++++|||
T Consensus 72 ~~f~~~~~~~~f~E~~~~~---------------------~-----------~~yg~~~~~---v~~~l~~G~illLD-- 114 (219)
T 1s96_A 72 DEFKEMISRDAFLEHAEVF---------------------G-----------NYYGTSREA---IEQVLATGVDVFLD-- 114 (219)
T ss_dssp HHHHHHHHTTCEEEEEEET---------------------T-----------EEEEEEHHH---HHHHHTTTCEEEEE--
T ss_pred HHHHHHHhcCHHHHHHHHH---------------------h-----------ccCCCCHHH---HHHHHhcCCeEEEE--
Confidence 66665554 2222100 0 000000111 12233346888998
Q ss_pred CCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 241 GDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 241 LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
||+.+...+.+.+. .+.||+++|||++.
T Consensus 115 LD~~~~~~i~~~l~-------~~~tI~i~th~~~~ 142 (219)
T 1s96_A 115 IDWQGAQQIRQKMP-------HARSIFILPPSKIE 142 (219)
T ss_dssp CCHHHHHHHHHHCT-------TCEEEEEECSSHHH
T ss_pred ECHHHHHHHHHHcc-------CCEEEEEECCCHHH
Confidence 99999999998875 36899999996544
No 113
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.56 E-value=9.1e-16 Score=149.82 Aligned_cols=149 Identities=15% Similarity=0.086 Sum_probs=103.1
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhh-hccceeeEeCCCCChhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRS-LQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~-~~ig~v~Q~~~l~~~~t 171 (382)
..++|++++|+||||||||||++.|+|+++ .+|+|.+.|.++..... ..+...++. ..+.+++|.+.++|..+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a-----~eql~~~~~~~gv~~v~q~~~~~p~~~ 199 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGA-----IEQLEEHAKRIGVKVIKHSYGADPAAV 199 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTH-----HHHHHHHHHHTTCEEECCCTTCCHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccch-----HHHHHHHHHHcCceEEeccccCCHHHH
Confidence 457899999999999999999999999999 89999999998754321 122332332 13448899999999999
Q ss_pred hhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchh
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDA 248 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~ 248 (382)
+++|+...... . ... -.++..|+.+.. ...+.+||+ ++|++. .|| .||+.+...
T Consensus 200 v~e~l~~~~~~---~---~d~--vliDtaG~~~~~-~~l~~eL~~-------i~ral~-------~de~llvLDa~t~~~ 256 (328)
T 3e70_C 200 AYDAIQHAKAR---G---IDV--VLIDTAGRSETN-RNLMDEMKK-------IARVTK-------PNLVIFVGDALAGNA 256 (328)
T ss_dssp HHHHHHHHHHH---T---CSE--EEEEECCSCCTT-TCHHHHHHH-------HHHHHC-------CSEEEEEEEGGGTTH
T ss_pred HHHHHHHHHhc---c---chh--hHHhhccchhHH-HHHHHHHHH-------HHHHhc-------CCCCEEEEecHHHHH
Confidence 99999654210 0 011 124445554322 255566664 444444 566 677777778
Q ss_pred hhhhccCccccccCCCCeEEEecC
Q 016817 249 TKRLFSAPGLRKCNENPILILTHG 272 (382)
Q Consensus 249 i~~~l~~l~~~~~~g~tiIiiTHd 272 (382)
+.+.++.+. +..+.|+|++||.
T Consensus 257 ~~~~~~~~~--~~~~it~iilTKl 278 (328)
T 3e70_C 257 IVEQARQFN--EAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHHH--HHSCCCEEEEECG
T ss_pred HHHHHHHHH--HhcCCCEEEEeCc
Confidence 888888772 4568999999993
No 114
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.55 E-value=4.6e-18 Score=185.14 Aligned_cols=89 Identities=8% Similarity=-0.007 Sum_probs=77.3
Q ss_pred cccCccccccccccccccCCCccceeeecceeeeehhHHH--HHHHHh---cCCCCcchhhhhhccCccccccCCCCeEE
Q 016817 194 LRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAE--IYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILI 268 (382)
Q Consensus 194 ~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~--iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIi 268 (382)
.+.+..+||.....++++.+|||||||||+|||||+++|+ +||||| +||+.....++++|+++ ++.|.|||+
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L---~~~G~Tviv 521 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL---RDLGNTVIV 521 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT---TTTTCEEEE
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH---HhcCCEEEE
Confidence 3467788987543459999999999999999999999887 999999 99999999999999998 456999999
Q ss_pred EecCCCCChhhhhhhhhhhh
Q 016817 269 LTHGDMLSTEERLDARLKIC 288 (382)
Q Consensus 269 iTHd~~l~~~~~~~d~v~ll 288 (382)
||||++. +.. ||+|++|
T Consensus 522 VtHd~~~--~~~-aD~ii~l 538 (916)
T 3pih_A 522 VEHDEEV--IRN-ADHIIDI 538 (916)
T ss_dssp ECCCHHH--HHT-CSEEEEE
T ss_pred EeCCHHH--HHh-CCEEEEE
Confidence 9997665 654 8888888
No 115
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.55 E-value=1.1e-16 Score=151.98 Aligned_cols=150 Identities=11% Similarity=0.000 Sum_probs=97.3
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~ 173 (382)
.+++|++++|+||||||||||++.+++... .|.+.+ |.+... ...+.|+..+.. ...+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~-g~~~~~----------------~~~v~~~~~e~~---~~~~~ 84 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLL-EVGELP----------------TGPVIYLPAEDP---PTAIH 84 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTT-CCCCCC----------------CCCEEEEESSSC---HHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcC-CCccCC----------------CccEEEEECCCC---HHHHH
Confidence 578999999999999999999999999654 566644 442210 013455443321 11111
Q ss_pred hhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-----cCCCCcc--
Q 016817 174 EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-----AGDSKPL-- 246 (382)
Q Consensus 174 eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-----~LD~~~~-- 246 (382)
..+. .++.. .......++++.+++.+.. ++.+..||+||+|++ ++++.+|+++++|| ++|+...
T Consensus 85 ~r~~----~~g~~-~~~~~~~~~~~~l~l~~~~-~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~ 155 (279)
T 1nlf_A 85 HRLH----ALGAH-LSAEERQAVADGLLIQPLI-GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGP 155 (279)
T ss_dssp HHHH----HHHTT-SCHHHHHHHHHHEEECCCT-TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHH
T ss_pred HHHH----HHHhh-cChhhhhhccCceEEeecC-CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHH
Confidence 1111 11111 1112233445666776554 478999999998865 58888999999999 5787665
Q ss_pred -hhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 247 -DATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 247 -~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
..+++.|++++ ++.|+|||+++|+...
T Consensus 156 ~~~~~~~L~~l~--~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 156 MAQVIGRMEAIA--ADTGCSIVFLHHASKG 183 (279)
T ss_dssp HHHHHHHHHHHH--HHHCCEEEEEEEC---
T ss_pred HHHHHHHHHHHH--HHcCCEEEEEecCCCc
Confidence 77778888773 4569999999997654
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.6e-17 Score=167.13 Aligned_cols=163 Identities=9% Similarity=-0.013 Sum_probs=94.6
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccce
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~ 142 (382)
.++|.++|+++.|+... +++++||+| +|+||||||||||+++|+|+.. +.|. +|.++.....
T Consensus 9 ~~~l~~~~l~~~y~~~~------vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~t-- 71 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKS------VKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKKT-- 71 (418)
T ss_dssp ------CCCCCCTTTTT------CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-----C--
T ss_pred cCcEEEEecceeECCEE------EecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCccc--
Confidence 46899999999996543 699999997 9999999999999999999976 4441 2221110000
Q ss_pred eehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec
Q 016817 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV 222 (382)
Q Consensus 143 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv 222 (382)
.+...+++++|+..+++.+|+.+++.+.... ........ +.+.+. .+++.+++||+
T Consensus 72 ---------~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~-----~~~~~~~~------i~~~i~----~~~~~~l~qr~ 127 (418)
T 2qag_C 72 ---------VQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV-----DNSNCWQP------VIDYID----SKFEDYLNAES 127 (418)
T ss_dssp ---------CEEEEEECC------CEEEEEEECC----------------CHH------HHHHHH----HHHHHHTTTSC
T ss_pred ---------eeeeeEEEEEecCCcccceeeeechhhhhhc-----cchhhHHH------HHHHHH----HHHHHHHHHHH
Confidence 0113689999998888889999988543210 00000011 111222 24567889999
Q ss_pred ceeeeehhHHH---HHHHHh----cCCCCcchhhhhhccCccccccCCCCeEEEecCCCC
Q 016817 223 DFAMVVSNIAE---IYKALK----AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 223 aIAraL~~~P~---iLLLDE----~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
+|||+++.+|+ +|++|| +||+... +.++.+ . .+.++|+|.|-.+.
T Consensus 128 ~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L---~-~~v~iIlVinK~Dl 179 (418)
T 2qag_C 128 RVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRL---H-EKVNIIPLIAKADT 179 (418)
T ss_dssp C-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHH---T-TTSEEEEEEESTTS
T ss_pred HHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHH---h-ccCcEEEEEEcccC
Confidence 99999999999 899999 4776542 444555 2 36788888885555
No 117
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.54 E-value=8.2e-17 Score=173.73 Aligned_cols=142 Identities=10% Similarity=-0.041 Sum_probs=95.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+++|++|+ ++|++++|+||||||||||+|+|+|+.. ..|... . .. + ..+++++|
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v------p---a~-----------~-~~i~~~~~-- 652 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV------P---AQ-----------K-VEIGPIDR-- 652 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB------S---SS-----------E-EEECCCCE--
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc------c---hh-----------c-ccceeHHH--
Confidence 68999999 9999999999999999999999999864 334211 0 00 0 25666665
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh---cC
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK---AG 241 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~L 241 (382)
+|+.+++.+++. ...+++|+|+++. +.+...+.+|+++|||| |+
T Consensus 653 -i~~~~~~~d~l~-------------------------------~~~stf~~e~~~~-~~il~~a~~psLlLLDEp~~Gt 699 (800)
T 1wb9_A 653 -IFTRVGAADDLA-------------------------------SGRSTFMVEMTET-ANILHNATEYSLVLMDEIGRGT 699 (800)
T ss_dssp -EEEEEC------------------------------------------CHHHHHHH-HHHHHHCCTTEEEEEESCCCCS
T ss_pred -HHhhCCHHHHHH-------------------------------hhhhhhhHHHHHH-HHHHHhccCCCEEEEECCCCCC
Confidence 344444444432 1123456666543 33334588999999999 89
Q ss_pred CCCcchhh-hhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 242 DSKPLDAT-KRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 242 D~~~~~~i-~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
|+.....+ ..+++.+. ++.|.++|++|||.++ +. +++++..+.+
T Consensus 700 d~~d~~~i~~~ll~~l~--~~~g~~vl~~TH~~el--~~-l~d~~~~v~n 744 (800)
T 1wb9_A 700 STYDGLSLAWACAENLA--NKIKALTLFATHYFEL--TQ-LPEKMEGVAN 744 (800)
T ss_dssp SSSHHHHHHHHHHHHHH--HTTCCEEEEECSCGGG--GG-HHHHSTTEEE
T ss_pred ChhHHHHHHHHHHHHHH--hccCCeEEEEeCCHHH--HH-HhhhhhceEE
Confidence 99988775 67777772 3258999999998765 43 7787766666
No 118
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.54 E-value=3e-17 Score=165.58 Aligned_cols=75 Identities=7% Similarity=-0.025 Sum_probs=62.9
Q ss_pred ccCCCccceeeecceeeeehh----HHHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhh
Q 016817 210 DLKSSPKYVLRRVDFAMVVSN----IAEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLD 282 (382)
Q Consensus 210 ~~~~LSGGqkQRvaIAraL~~----~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~ 282 (382)
++..||||||||++||++|+. +|++||||| +||+..+..+.+.|+++ .+.+.++|+|||+.. ....|
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~---~~~~~~~ii~th~~~---~~~~~ 403 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH---RNPDLQFIVISLKNT---MFEKS 403 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHH---CBTTBEEEEECSCHH---HHTTC
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHH---hcCCCEEEEEECCHH---HHHhC
Confidence 345699999999999999995 699999999 99999999999999987 334789999999643 34568
Q ss_pred hhhhhhhh
Q 016817 283 ARLKICEY 290 (382)
Q Consensus 283 d~v~ll~~ 290 (382)
|+++.+..
T Consensus 404 d~~~~~~~ 411 (430)
T 1w1w_A 404 DALVGVYR 411 (430)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEE
Confidence 88887754
No 119
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.54 E-value=1.4e-17 Score=163.26 Aligned_cols=177 Identities=15% Similarity=0.075 Sum_probs=111.8
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++++++.|+... +|+++||++++|++++|+||||||||||+++|+|++. ++|+|.+.|.++......
T Consensus 29 ~ie~~~~~~~~~~~~------~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~--- 99 (337)
T 2qm8_A 29 LAESRRADHRAAVRD------LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG--- 99 (337)
T ss_dssp HHTCSSHHHHHHHHH------HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSC---
T ss_pred HHeeCCcccccChHH------HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccc---
Confidence 689999999996433 6999999999999999999999999999999999999 899999999875321110
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChh---------h---hhhhHHHHH-----------------------------hhh
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYN---------R---VHEGLEELS-----------------------------SWM 183 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~---------t---v~eni~~~~-----------------------------~~~ 183 (382)
......+ ..+++++|++.+|... + +.+.+.... ...
T Consensus 100 --~~~~~~~-~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~ 176 (337)
T 2qm8_A 100 --GSILGDK-TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLM 176 (337)
T ss_dssp --CCSSCCG-GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEE
T ss_pred --cchHHHh-hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEE
Confidence 0001123 3789999998777531 1 122111000 000
Q ss_pred hcCcccc-ccc----cccCccccccccccccccCCCccceeeecceeeeehh------HHHHHHHHhcCCCCcchhhhhh
Q 016817 184 SEGVHHN-QRC----LRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN------IAEIYKALKAGDSKPLDATKRL 252 (382)
Q Consensus 184 ~~~~~~~-~~~----~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~------~P~iLLLDE~LD~~~~~~i~~~ 252 (382)
.....+. +.+ .+....+.+. ..+......+|+|++|++..|++++. .|+++. =-++|..+...+++.
T Consensus 177 d~~~~~~~~~i~~~i~~~~~ivvlN-K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~-~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 177 LPGAGDELQGIKKGIFELADMIAVN-KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT-ISGLHGKGLDSLWSR 254 (337)
T ss_dssp CSCC------CCTTHHHHCSEEEEE-CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE-EBTTTTBSHHHHHHH
T ss_pred cCCCcccHHHHHHHHhccccEEEEE-chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE-EeCCCCCCHHHHHHH
Confidence 0000000 001 1112223332 22101234578999999988887776 455442 118899888888888
Q ss_pred ccCc
Q 016817 253 FSAP 256 (382)
Q Consensus 253 l~~l 256 (382)
|.++
T Consensus 255 I~~~ 258 (337)
T 2qm8_A 255 IEDH 258 (337)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.51 E-value=7.4e-16 Score=152.90 Aligned_cols=164 Identities=14% Similarity=0.022 Sum_probs=98.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-c-cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE--
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY-- 162 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~-~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q-- 162 (382)
+|++++ +++|++++|+||||||||||+++|+|+++ + +|+|.+.|.++. .. ++ ..+++++|
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~~------------~~-~~~~~v~Q~~ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-YV------------FK-HKKSIVNQRE 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-SC------------CC-CSSSEEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-hh------------hc-cCceEEEeee
Confidence 466655 78999999999999999999999999998 6 899988876442 10 22 27889998
Q ss_pred ---eCCCCChhhhhhhHHHHHhhhhcCcc-ccccccccCcccc-----------------------c-------------
Q 016817 163 ---DSRGFNYNRVHEGLEELSSWMSEGVH-HNQRCLRSDDCAL-----------------------M------------- 202 (382)
Q Consensus 163 ---~~~l~~~~tv~eni~~~~~~~~~~~~-~~~~~~~~l~~~~-----------------------L------------- 202 (382)
++..|. .++..++..-.....-+.. +.+.+..+++.++ +
T Consensus 191 ~g~~~~~~~-~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l 269 (372)
T 2ewv_A 191 VGEDTKSFA-DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVL 269 (372)
T ss_dssp BTTTBSCSH-HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHH
Confidence 444442 3444443210000000000 0111111111100 0
Q ss_pred ccccc---ccccCCCccceeeecceeeeehhHHHH--HHHHh---cCCCC----c-----chhhhhhccCccccccCCCC
Q 016817 203 KNDAE---IDDLKSSPKYVLRRVDFAMVVSNIAEI--YKALK---AGDSK----P-----LDATKRLFSAPGLRKCNENP 265 (382)
Q Consensus 203 ~~~~~---~~~~~~LSGGqkQRvaIAraL~~~P~i--LLLDE---~LD~~----~-----~~~i~~~l~~l~~~~~~g~t 265 (382)
...+. .+..-.+|+| ||++||++|..+|++ +|+|| +||.. . +....+.+..+ ..|.|
T Consensus 270 ~~~l~~vv~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~----~~g~t 343 (372)
T 2ewv_A 270 SFILQGIISQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY----KQGLI 343 (372)
T ss_dssp HHSCCEEEEEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTT----TTSSS
T ss_pred HHhhhEEEEEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH----HCCCC
Confidence 00000 0111235888 899999999999999 99999 66632 2 34455555554 26889
Q ss_pred eEEEecCCCC
Q 016817 266 ILILTHGDML 275 (382)
Q Consensus 266 iIiiTHd~~l 275 (382)
.+.+.| ++
T Consensus 344 ~~~~a~--r~ 351 (372)
T 2ewv_A 344 TLEDAM--EA 351 (372)
T ss_dssp CTTTTT--SS
T ss_pred CHHHHH--HH
Confidence 888888 55
No 121
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.51 E-value=8.7e-16 Score=158.30 Aligned_cols=181 Identities=11% Similarity=-0.037 Sum_probs=107.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc--eeehhhh-h----hhHhhhccc
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT--ITMYMEE-H----NVMRSLQSG 158 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~--~~~~~~~-~----~~~r~~~ig 158 (382)
+++++++.+++|+.++|+||||||||||+++|+|+++ ++|.|+++|.+-...... .....+. . ..++...-+
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~ 328 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRA 328 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHH
Confidence 5788999999999999999999999999999999999 899999998742111100 0000000 0 000000011
Q ss_pred eeeEeC--CCCChhhhhhhHHHHHhhh-hcCc---cccccccccCcccc-----cccccc---c---cccCCCccceeee
Q 016817 159 FCVYDS--RGFNYNRVHEGLEELSSWM-SEGV---HHNQRCLRSDDCAL-----MKNDAE---I---DDLKSSPKYVLRR 221 (382)
Q Consensus 159 ~v~Q~~--~l~~~~tv~eni~~~~~~~-~~~~---~~~~~~~~~l~~~~-----L~~~~~---~---~~~~~LSGGqkQR 221 (382)
.+.|+| .+++..+..|+...+.... +... .+...+.++++++. +...+. + .....+||||+||
T Consensus 329 ~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R 408 (511)
T 2oap_1 329 ALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLR 408 (511)
T ss_dssp TGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEE
T ss_pred hhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceE
Confidence 233443 2334455566554332221 1100 01122223333322 211111 1 2344689999999
Q ss_pred cceeeeehhHHHHHHHHh--cCCCCcchhhhhhccCccccccCCCCeEE--EecCCCCChhhhhhh
Q 016817 222 VDFAMVVSNIAEIYKALK--AGDSKPLDATKRLFSAPGLRKCNENPILI--LTHGDMLSTEERLDA 283 (382)
Q Consensus 222 vaIAraL~~~P~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~tiIi--iTHd~~l~~~~~~~d 283 (382)
+++|.+ | +||+.....+++.+.++ ...+.|+++ +|| .++++...|.
T Consensus 409 ~~~ai~-----------E~~GlDp~~~~~~~~~l~~~---~~~~~tii~~~~sH--~l~ei~~~~g 458 (511)
T 2oap_1 409 RTKEVN-----------EILGIDPVDKNLLVNQFVKW---DPKEDKHIEVSMPK--KLEKMADFLG 458 (511)
T ss_dssp EEEEEE-----------EEEECCSSSSCCEEEEEEEE---ETTTTEEEECSCCT--HHHHHHHHHT
T ss_pred EEEEEE-----------EEcCcccCCCeEEEEEeEEE---cccCCEEEEcccHH--HHHHHHHHcC
Confidence 999854 8 99999999999999987 345888875 899 4444665553
No 122
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.50 E-value=1.5e-16 Score=138.16 Aligned_cols=92 Identities=4% Similarity=-0.073 Sum_probs=73.6
Q ss_pred ccccCcccccccc--ccccccCCCccceeeeccee------eeehhHHHHHHHHh---cCCCCcchhhhhhccCcccccc
Q 016817 193 CLRSDDCALMKND--AEIDDLKSSPKYVLRRVDFA------MVVSNIAEIYKALK---AGDSKPLDATKRLFSAPGLRKC 261 (382)
Q Consensus 193 ~~~~l~~~~L~~~--~~~~~~~~LSGGqkQRvaIA------raL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~ 261 (382)
..+.++.+++... ..++++.+||||||||++|| |||+.+|++||||| +||+.++..+.+.|.++ .+
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~ 111 (148)
T 1f2t_B 35 VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY---LK 111 (148)
T ss_dssp EEETTSSEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHT---GG
T ss_pred hhhhcCceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHH---Hc
Confidence 3444444554421 12488999999999999876 89999999999999 99999999999999997 33
Q ss_pred CCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 262 NENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 262 ~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
.|.|||+||||++ +..+||++++++.
T Consensus 112 ~~~tiiivsH~~~---~~~~~d~ii~l~~ 137 (148)
T 1f2t_B 112 KIPQVILVSHDEE---LKDAADHVIRISL 137 (148)
T ss_dssp GSSEEEEEESCGG---GGGGCSEEEEEEE
T ss_pred cCCEEEEEEChHH---HHHhCCEEEEEEc
Confidence 5899999999763 5568899888853
No 123
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.50 E-value=5.5e-16 Score=149.61 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=82.1
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeee---EeecCCCcccceeehhhhhhhHhhhccceeeEeCCCC--
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-- 167 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~-- 167 (382)
++.+|++++|+||||||||||+|+|+ +.+ .+|+|.+ +|+++...... .+...+||++|+|.+.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~----------~~~~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL----------IPFGKGSFVGDTPGFSKV 229 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE----------EEETTTEEEESSCCCSSC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE----------EEcCCCcEEEECcCcCcC
Confidence 45679999999999999999999999 888 8999999 88866432211 1112689999998543
Q ss_pred ---ChhhhhhhHHH-HHh------hhhc---CccccccccccCccccccccccccccCCCccceeeecceee
Q 016817 168 ---NYNRVHEGLEE-LSS------WMSE---GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAM 226 (382)
Q Consensus 168 ---~~~tv~eni~~-~~~------~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAr 226 (382)
+.+|+ +|+.. +.. .+.. .......+.++++.++|.+...++++..|||.+++++.|||
T Consensus 230 ~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 230 EATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp CGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred cccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788 77621 110 0111 11223567889999999863345999999999999999987
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.49 E-value=7.8e-17 Score=158.62 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=97.1
Q ss_pred CcccC-CCCCCceeeeeeecccCCCchhHHHHHHHhh--c-cc----ce-eeeEeecCCCcccceeehhhhhhhHhhhcc
Q 016817 87 GIQKG-GMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RS----GL-VLFAQTSSGNSSHTITMYMEEHNVMRSLQS 157 (382)
Q Consensus 87 vL~~i-sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~--~-~~----G~-I~i~G~~i~~~~~~~~~~~~~~~~~r~~~i 157 (382)
.|+.+ ++.|++|++++|+||||||||||++.+++.. + ++ |+ |++++.+.. .+ .++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---------------~~-~~i 182 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---------------RP-ERI 182 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---------------CH-HHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---------------CH-HHH
Confidence 36666 7899999999999999999999999999998 4 34 68 889887431 01 367
Q ss_pred ceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHH
Q 016817 158 GFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKA 237 (382)
Q Consensus 158 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLL 237 (382)
++++|.+.+++. ++.+|+.+. ..... ....+.+ +.+. ..+.+||||| .+|++||+
T Consensus 183 ~~i~q~~~~~~~-~v~~ni~~~-----~~~~~-~~~~~~l------~~~~-~~~~~lS~G~-----------~~~~llIl 237 (349)
T 1pzn_A 183 REIAQNRGLDPD-EVLKHIYVA-----RAFNS-NHQMLLV------QQAE-DKIKELLNTD-----------RPVKLLIV 237 (349)
T ss_dssp HHHHHTTTCCHH-HHGGGEEEE-----ECCSH-HHHHHHH------HHHH-HHHHHSSSSS-----------SCEEEEEE
T ss_pred HHHHHHcCCCHH-HHhhCEEEE-----ecCCh-HHHHHHH------HHHH-HHHHHhcccc-----------CCCCEEEE
Confidence 888888777653 777776321 00000 0000111 1122 4556678877 67999999
Q ss_pred Hh---cCCCCc------------chhhhhhccCccccccCCCCeEEEecCCC
Q 016817 238 LK---AGDSKP------------LDATKRLFSAPGLRKCNENPILILTHGDM 274 (382)
Q Consensus 238 DE---~LD~~~------------~~~i~~~l~~l~~~~~~g~tiIiiTHd~~ 274 (382)
|| .+|+.. ...++..|++++ ++.|+|||+++|...
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la--~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA--NLYDIAVFVTNQVQA 287 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHH--HHTTCEEEEEEECC-
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHH--HHcCcEEEEEccccc
Confidence 99 677642 245555666653 456899999999543
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.48 E-value=1.3e-15 Score=150.13 Aligned_cols=126 Identities=14% Similarity=0.010 Sum_probs=87.0
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeE-eecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFA-QTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~-G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
++++++.+ +|++++|+||||||||||+|+|+|+.. .+|+|.++ |++.. . -+...+++++|+.
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-----t---------t~~~~i~~v~q~~ 270 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH-----T---------TTAARLYHFPHGG 270 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------------------CCCEEEECTTSC
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc-----c---------eEEEEEEEECCCC
Confidence 56666654 699999999999999999999999986 58999987 65321 0 0113789999988
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHH
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEI 234 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~i 234 (382)
.+++..++.++.. +........+.+.++++.+++.++.+ ..+.+|| ||+||++||++++...++
T Consensus 271 ~l~dtpgv~e~~l----~~l~~~e~~~~~~e~l~~~gl~~f~~-~~~~~lS-G~~~r~ala~gli~~~R~ 334 (358)
T 2rcn_A 271 DVIDSPGVREFGL----WHLEPEQITQGFVEFHDYLGHCKYRD-CKHDADP-GCAIREAVENGAIAETRF 334 (358)
T ss_dssp EEEECHHHHTCCC----CCCCHHHHHHTSGGGGGGTTCSSSTT-CCSSSCT-TCHHHHHHHHTSSCHHHH
T ss_pred EecCcccHHHhhh----cCCCHHHHHHHHHHHHHHcCCchhcC-CCcccCC-HHHHHHHHHhcCCCHHHH
Confidence 8888788877421 10001111245677888999987654 9999999 999999999999887664
No 126
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.48 E-value=2e-16 Score=156.33 Aligned_cols=153 Identities=10% Similarity=-0.015 Sum_probs=94.5
Q ss_pred HHHHHhhh---cccCCeee-----ecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc
Q 016817 68 ELRHKFLS---YRSGDFWI-----PIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS 138 (382)
Q Consensus 68 ~i~nvs~~---y~~~~~~v-----~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~ 138 (382)
++++++|+ |+.....+ ...+++++||.|++|++++|+||||||||||+++|+|+++ ++|.|+++|.. +.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 78888888 75321111 0002399999999999999999999999999999999999 89999999752 11
Q ss_pred ccceeehhhhhhhHhhhccceee-EeCCC--CChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCc
Q 016817 139 SHTITMYMEEHNVMRSLQSGFCV-YDSRG--FNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSP 215 (382)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~ig~v~-Q~~~l--~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 215 (382)
.. . ..+ ..++|++ |++.+ ++..|+++|+
T Consensus 215 ~~------~---~~~-~~v~~v~~q~~~~~~~~~~t~~~~i--------------------------------------- 245 (361)
T 2gza_A 215 FL------P---DHP-NHVHLFYPSEAKEEENAPVTAATLL--------------------------------------- 245 (361)
T ss_dssp CC------T---TCS-SEEEEECC----------CCHHHHH---------------------------------------
T ss_pred Cc------c---ccC-CEEEEeecCccccccccccCHHHHH---------------------------------------
Confidence 10 0 022 2688888 76532 2334444444
Q ss_pred cceeeecceeeeehhHHHHHHHHhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 216 KYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 216 GGqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.++..+|+.+++||.-+ ..+.+.++.+. ....|++.++|+ .+ +..+++|+..+..
T Consensus 246 ---------~~~l~~~pd~~l~~e~r~----~~~~~~l~~l~---~g~~~~l~t~H~--~~-~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 246 ---------RSCLRMKPTRILLAELRG----GEAYDFINVAA---SGHGGSITSCHA--GS-CELTFERLALMVL 301 (361)
T ss_dssp ---------HHHTTSCCSEEEESCCCS----THHHHHHHHHH---TTCCSCEEEEEC--SS-HHHHHHHHHHHHT
T ss_pred ---------HHHHhcCCCEEEEcCchH----HHHHHHHHHHh---cCCCeEEEEECC--CC-HHHHHHHHHHHHh
Confidence 333333444444455111 23445555552 123478999995 32 6778888888765
No 127
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.47 E-value=6.4e-16 Score=147.09 Aligned_cols=126 Identities=14% Similarity=0.088 Sum_probs=88.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC-C
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS-R 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~-~ 165 (382)
+++++++++++| ++|+||||||||||+++|+|.... |.|.++|.++.... ... .+ +.++++||.. .
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~------~~~---~~-~~i~~vf~~a~~ 101 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMY------VGE---SE-RAVRQVFQRAKN 101 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSST------THH---HH-HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhh------hhH---HH-HHHHHHHHHHHh
Confidence 599999999999 999999999999999999998764 68999998654221 111 12 3678888875 4
Q ss_pred CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh
Q 016817 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK 239 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE 239 (382)
.++..++.+++..+... .. .... . ..... .++.+.+|||||+||+.|++|+.++|++| |+
T Consensus 102 ~~p~i~~~Deid~~~~~--r~---~~~~-~-----~~~~~-~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~ 161 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCPR--RS---DRET-G-----ASVRV-VNQLLTEMDGLEARQQVFIMAATNRPDII--DP 161 (274)
T ss_dssp TCSEEEEEETCTTTCC--------------------CTTH-HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CH
T ss_pred cCCCeEeeehhhhhhcc--cC---CCcc-h-----HHHHH-HHHHHHhhhcccccCCEEEEeecCChhhC--CH
Confidence 56667777777532110 00 0000 0 01222 24778899999999999999999999875 77
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.45 E-value=7.5e-16 Score=143.49 Aligned_cols=138 Identities=11% Similarity=0.027 Sum_probs=96.3
Q ss_pred ceeeeeeecccCCCchhHHHHHH---Hhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMY---SVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRV 172 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~---Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv 172 (382)
++++++|+||||||||||+++|+ |+.. ++|+|.++|.+.. .. .. ..+++++|+..+++..++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----------~~---~~-~~i~~~~~~~~~~~~~~v 91 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----------TE---VG-EMAKQYIEKSLLVPDHVI 91 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----------CH---HH-HHHHHHHHTTCCCCHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----------Ch---HH-HHHHHHHHcCCCCCHHHH
Confidence 47899999999999999999999 9888 8999998876321 00 11 245667788778888899
Q ss_pred hhhHHHHHhh------hhcCccc-ccccccc--Ccccc------------ccccccccccCCCccceeeecceeeee-hh
Q 016817 173 HEGLEELSSW------MSEGVHH-NQRCLRS--DDCAL------------MKNDAEIDDLKSSPKYVLRRVDFAMVV-SN 230 (382)
Q Consensus 173 ~eni~~~~~~------~~~~~~~-~~~~~~~--l~~~~------------L~~~~~~~~~~~LSGGqkQRvaIAraL-~~ 230 (382)
.+++...... ...+... ..++..+ +..++ +.. +.++++.+||| || +|+ +.
T Consensus 92 ~~~l~~~l~~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r-~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 92 TRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDR-LSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp HHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHH-HHTEEEETTTT----EE---EETTTS
T ss_pred HHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHH-HHcCCCcCCCC----Cc---cccccC
Confidence 8888653210 0011111 1111111 12233 222 23478899999 66 788 99
Q ss_pred HHHHHHHH----h---cCCCCcchhhhhhccCc
Q 016817 231 IAEIYKAL----K---AGDSKPLDATKRLFSAP 256 (382)
Q Consensus 231 ~P~iLLLD----E---~LD~~~~~~i~~~l~~l 256 (382)
+|++++|| | ++|+.++..+.+.++++
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 99999999 9 89999999999998876
No 129
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=9.9e-17 Score=161.32 Aligned_cols=177 Identities=13% Similarity=0.020 Sum_probs=101.4
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceee--eeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCccccee
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTIT 143 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~--~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~ 143 (382)
.+++++ ++.|++. + |+++||++++|++ ++|+||||||||||+|+|+|+. ++|.++......
T Consensus 16 ~l~~~~-~~~y~~~------~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-------l~g~~~~~~~~~-- 78 (427)
T 2qag_B 16 TVPLAG-HVGFDSL------P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-------FEGEPATHTQPG-- 78 (427)
T ss_dssp -CCCCC-CC-CC--------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-------C-------CCSS--
T ss_pred eEEEee-EEEECCe------e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-------ccCCcCCCCCcc--
Confidence 566667 7888532 2 9999999999999 9999999999999999999973 344433211110
Q ss_pred ehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc--Ccc----ccccccccCccc-cccc---cccccc---
Q 016817 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE--GVH----HNQRCLRSDDCA-LMKN---DAEIDD--- 210 (382)
Q Consensus 144 ~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--~~~----~~~~~~~~l~~~-~L~~---~~~~~~--- 210 (382)
..+ +.++|++|++.+++.+|+.+|+.+....... ... ......++++.. ++.. ...+..
T Consensus 79 -------~~~-~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~ 150 (427)
T 2qag_B 79 -------VQL-QSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHV 150 (427)
T ss_dssp -------CEE-EEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCE
T ss_pred -------ceE-eeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccE
Confidence 012 3799999998888888998887432100000 000 001111111111 1110 000011
Q ss_pred --------cCCCccceeeecceeeeehhHHHHHHHHh---cCCCCcchhhhhhccC-ccccccCCCCeEEEecCC
Q 016817 211 --------LKSSPKYVLRRVDFAMVVSNIAEIYKALK---AGDSKPLDATKRLFSA-PGLRKCNENPILILTHGD 273 (382)
Q Consensus 211 --------~~~LSGGqkQRvaIAraL~~~P~iLLLDE---~LD~~~~~~i~~~l~~-l~~~~~~g~tiIiiTHd~ 273 (382)
-+.|+-.+ +.|+++|..+++++++|+ .|.+.....+.+.+++ + ...|.+|+.++.|.
T Consensus 151 ~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L---~~~gi~I~~is~~d 219 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSEL---VSNGVQIYQFPTDD 219 (427)
T ss_dssp EEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHH---BTTBCCCCCCC---
T ss_pred EEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHH---HHcCCcEEecCCCc
Confidence 12344444 678888888889999999 6777777777777776 5 45799999999753
No 130
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.43 E-value=1.6e-15 Score=148.00 Aligned_cols=160 Identities=15% Similarity=0.001 Sum_probs=106.5
Q ss_pred chhHHHHHhhhcccCCeeeecCCcccCCCCCCce-------eeeeeecccCCCchhHHHHHHHhh----c-ccceeeeEe
Q 016817 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV-------ITILLMGFSGSGKSSLVNLMYSVL----S-RSGLVLFAQ 132 (382)
Q Consensus 65 ~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~G-------e~~alvGpnGsGKSTLl~~i~Gl~----~-~~G~I~i~G 132 (382)
.+++.++++..|+... +++++++.+.+| +.++|+||||+|||||+++|+|.+ . .+|.+..++
T Consensus 17 ~~lr~~~l~~~~g~~~------~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 17 QFLRPKSLDEFIGQEN------VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp CTTSCSSGGGCCSCHH------HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred HHcCCccHHHccCcHH------HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 3567778888885433 588999998877 899999999999999999999998 5 578877665
Q ss_pred ecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhc-----CccccccccccCcccccccccc
Q 016817 133 TSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-----GVHHNQRCLRSDDCALMKNDAE 207 (382)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-----~~~~~~~~~~~l~~~~L~~~~~ 207 (382)
.++.. ....++...+.|+.|...+++ ++.+++......... .....+.+...+..+++.. ..
T Consensus 91 ~~l~~----------~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 91 GDMAA----------ILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp HHHHH----------HHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EE
T ss_pred HHHHH----------HHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ec
Confidence 53210 001122236888888766654 667766332111100 0111233445566777764 44
Q ss_pred ccccCCCccceeeecceeeeehhHHHHHHHHhcCCCCcchhhhhhccCcc
Q 016817 208 IDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPG 257 (382)
Q Consensus 208 ~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~i~~~l~~l~ 257 (382)
..+..||+|++||++++ -+||+.+...+.++|++.+
T Consensus 158 -~~~~~Ls~~l~sR~~l~-------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 158 -TRSGLLSSPLRSRFGII-------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp -SCGGGSCHHHHTTCSEE-------------EECCCCCHHHHHHHHHHHH
T ss_pred -CCcccCCHHHHHhcCce-------------eeCCCCCHHHHHHHHHHHH
Confidence 78899999999999877 3899999999999998873
No 131
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.40 E-value=2.9e-15 Score=144.31 Aligned_cols=118 Identities=14% Similarity=0.021 Sum_probs=75.7
Q ss_pred CCcccCC----CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeee---EeecCCCcccceeehhhhhhhHhhhcc
Q 016817 86 GGIQKGG----MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNSSHTITMYMEEHNVMRSLQS 157 (382)
Q Consensus 86 ~vL~~is----l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~r~~~i 157 (382)
.+.++.+ |++.+|++++|+||||||||||+|+|+|+.+ ++|+|.+ +|+++...... .+.+.+
T Consensus 153 SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~----------~~~~~~ 222 (301)
T 1u0l_A 153 SAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL----------LKFDFG 222 (301)
T ss_dssp CTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE----------EECTTS
T ss_pred ECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE----------EEcCCC
Confidence 3555554 4466899999999999999999999999999 8999999 89876532211 111258
Q ss_pred ceeeEeCC----------------CCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCcc
Q 016817 158 GFCVYDSR----------------GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216 (382)
Q Consensus 158 g~v~Q~~~----------------l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSG 216 (382)
||++|+|. +|+.+++ +|+.+.. .........++.++++.++|.....+++|.+||+
T Consensus 223 g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~--~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 223 GYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSD--CNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp CEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTT--CCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCC--CcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 89999864 5788888 8875421 1112233456788999999953334599999996
No 132
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.40 E-value=1.1e-15 Score=166.20 Aligned_cols=87 Identities=8% Similarity=-0.055 Sum_probs=76.4
Q ss_pred cCccccccccccccccCCCccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEe
Q 016817 196 SDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILT 270 (382)
Q Consensus 196 ~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiT 270 (382)
.++.+||.....++.+.+|||||+|||+||++|+.+| ++||||| +||+.....++++|+++ ++.|.|||+|+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L---r~~G~TVIvVe 563 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM---RDLGNTLIVVE 563 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH---HTTTCEEEEEC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH---HhCCCEEEEEe
Confidence 4788899754335999999999999999999999984 9999999 99999999999999999 56799999999
Q ss_pred cCCCCChhhhhhhhhhhh
Q 016817 271 HGDMLSTEERLDARLKIC 288 (382)
Q Consensus 271 Hd~~l~~~~~~~d~v~ll 288 (382)
||++. +. .||+|++|
T Consensus 564 Hdl~~--i~-~ADrIi~L 578 (972)
T 2r6f_A 564 HDEDT--ML-AADYLIDI 578 (972)
T ss_dssp CCHHH--HH-SCSEEEEE
T ss_pred cCHHH--HH-hCCEEEEe
Confidence 96654 65 68999988
No 133
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.38 E-value=1e-14 Score=136.01 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=97.1
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
..+++++.+.|.... +++++++++++| ++|+||||||||||+++|++... .|.|.++|.++....
T Consensus 25 ~~~l~~l~~~~~~~~------~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~------ 89 (254)
T 1ixz_A 25 KEELKEIVEFLKNPS------RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMF------ 89 (254)
T ss_dssp HHHHHHHHHHHHCHH------HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSC------
T ss_pred HHHHHHHHHHHHCHH------HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHH------
Confidence 567889988885433 599999999999 88999999999999999999875 788888886532110
Q ss_pred hhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCc-cccccccccCccccccccccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGV-HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.. ..+ +.++++||... .++..++.+++..+........ ...+.. ...+ ++...+|||||+||+.
T Consensus 90 ~~---~~~-~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~---------~~~~-~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 90 VG---VGA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDER---------EQTL-NQLLVEMDGFEKDTAI 155 (254)
T ss_dssp TT---HHH-HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHH---------HHHH-HHHHHHHHTCCTTCCE
T ss_pred hh---HHH-HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHH---------HHHH-HHHHHHHhCCCCCCCE
Confidence 00 112 25778888753 4566778888865431110000 000000 0112 2556789999999999
Q ss_pred eeeeehhHHHHHHHHh
Q 016817 224 FAMVVSNIAEIYKALK 239 (382)
Q Consensus 224 IAraL~~~P~iLLLDE 239 (382)
||+|+.++|++ +|+
T Consensus 156 i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 156 VVMAATNRPDI--LDP 169 (254)
T ss_dssp EEEEEESCGGG--SCG
T ss_pred EEEEccCCchh--CCH
Confidence 99999999976 455
No 134
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.38 E-value=8e-15 Score=138.92 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=97.3
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
..+++++.+.|.... +++++++++++| ++|+||||||||||+++|++... .|.|.+++.++....
T Consensus 49 ~~~l~~l~~~~~~~~------~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~------ 113 (278)
T 1iy2_A 49 KEELKEIVEFLKNPS------RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMF------ 113 (278)
T ss_dssp HHHHHHHHHHHHCHH------HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHST------
T ss_pred HHHHHHHHHHHHCHH------HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHH------
Confidence 567888988885433 599999999999 88999999999999999999875 788999887532110
Q ss_pred hhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCcc-ccccccccCccccccccccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGVH-HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~~-~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
. ...+ ..++++||... .++..++.|++..+......... ..+. ....+. +.+.+|||||+||+.
T Consensus 114 ~---~~~~-~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~---------~~~~~~-~ll~~lsgg~~~~~~ 179 (278)
T 1iy2_A 114 V---GVGA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDE---------REQTLN-QLLVEMDGFEKDTAI 179 (278)
T ss_dssp T---THHH-HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHH---------HHHHHH-HHHHHHTTCCTTCCE
T ss_pred h---hHHH-HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchH---------HHHHHH-HHHHHHhCCCCCCCE
Confidence 0 0112 25778888753 55667888888654311100000 0000 011122 556789999999999
Q ss_pred eeeeehhHHHHHHHHh
Q 016817 224 FAMVVSNIAEIYKALK 239 (382)
Q Consensus 224 IAraL~~~P~iLLLDE 239 (382)
||+|+.++|++ +|+
T Consensus 180 i~~a~t~~p~~--ld~ 193 (278)
T 1iy2_A 180 VVMAATNRPDI--LDP 193 (278)
T ss_dssp EEEEEESCTTS--SCH
T ss_pred EEEEecCCchh--CCH
Confidence 99999999976 455
No 135
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.36 E-value=7.7e-15 Score=132.88 Aligned_cols=150 Identities=9% Similarity=-0.028 Sum_probs=93.4
Q ss_pred CcccCCC-CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 87 GIQKGGM-DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 87 vL~~isl-~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
.|+.+.. .+++|++++|+||||||||||++.+++ . ..+.++++..+- ........... ..++.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~--------~~~~~~~~~~~-~~~~~~--- 73 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGG--------FSPERLVQMAE-TRGLNP--- 73 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCC--------CCHHHHHHHHH-TTTCCH---
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCC--------CCHHHHHHHHH-hcCCCh---
Confidence 4777765 799999999999999999999999999 5 445555554310 00011110000 111000
Q ss_pred CCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccce--eeecceeeeehhH-HHHHHHHh--
Q 016817 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV--LRRVDFAMVVSNI-AEIYKALK-- 239 (382)
Q Consensus 165 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGq--kQRvaIAraL~~~-P~iLLLDE-- 239 (382)
.+++ .+-.+..+|+++ +|+++.+++++.+ |+++++||
T Consensus 74 -----------------------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 74 -----------------------------EEAL---------SRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp -----------------------------HHHH---------HHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCC
T ss_pred -----------------------------HHHh---------hcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcH
Confidence 0000 011233445665 4678888888876 99999999
Q ss_pred -cCCCCcc--------hhhhhhccCccccccCCCCeEEEecCCCCC-----------hhhhhhhhhhhhhh
Q 016817 240 -AGDSKPL--------DATKRLFSAPGLRKCNENPILILTHGDMLS-----------TEERLDARLKICEY 290 (382)
Q Consensus 240 -~LD~~~~--------~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~-----------~~~~~~d~v~ll~~ 290 (382)
.+|+... ..+.+.|++++ ++.|.|||+++|..... .+..+||.+++++.
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~L~~l~--~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 116 AHYRAEENRSGLIAELSRQLQVLLWIA--RKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp CCTTGGGGSSTTHHHHHHHHHHHHHHH--HHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred HHhhhcCchHHHHHHHHHHHHHHHHHH--HHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 6676432 23445567663 44589999999965421 35667888888876
No 136
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.35 E-value=1.6e-15 Score=165.34 Aligned_cols=87 Identities=7% Similarity=-0.076 Sum_probs=76.2
Q ss_pred cCccccccccccccccCCCccceeeecceeeeehhH--HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEe
Q 016817 196 SDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNI--AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILT 270 (382)
Q Consensus 196 ~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~--P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiT 270 (382)
.++.+||.....++.+.+|||||+|||+||++|+.+ |++||||| +||+.....++++|+++ ++.|.|||+|+
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L---r~~G~TVIvVe 580 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRL---RDLGNTLIVVE 580 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHH---HHTTCEEEEEC
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHH---HHcCCEEEEEC
Confidence 477889975423599999999999999999999998 58999999 99999999999999998 56799999999
Q ss_pred cCCCCChhhhhhhhhhhh
Q 016817 271 HGDMLSTEERLDARLKIC 288 (382)
Q Consensus 271 Hd~~l~~~~~~~d~v~ll 288 (382)
||++. +. .||+|++|
T Consensus 581 Hdl~~--i~-~ADrIi~L 595 (993)
T 2ygr_A 581 HDEDT--IE-HADWIVDI 595 (993)
T ss_dssp CCHHH--HH-TCSEEEEE
T ss_pred CCHHH--HH-hCCEEEEe
Confidence 96654 65 68999988
No 137
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.35 E-value=2.7e-14 Score=129.71 Aligned_cols=115 Identities=16% Similarity=0.051 Sum_probs=69.1
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYN 170 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~ 170 (382)
.++|++++|+||||||||||+++|+|+++ . .|.|.++|..+... .......+..+.+++++|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~------ 86 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR------LLEPRGLLPRKGAPETFDFE------ 86 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH------HHGGGTCGGGTTSGGGBCHH------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH------HHHHhcccccCCCCchhhHH------
Confidence 57899999999999999999999999998 3 67888887643210 00000001111233333321
Q ss_pred hhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeeccee-eeehhHHHHHHHHh
Q 016817 171 RVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA-MVVSNIAEIYKALK 239 (382)
Q Consensus 171 tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIA-raL~~~P~iLLLDE 239 (382)
...+.+.. +..+ +.+... . . .....+|+||+||+++| ++++.++.++++||
T Consensus 87 ~~~~~l~~----l~~~-----------~~i~~p-~-~-d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de 138 (208)
T 3c8u_A 87 GFQRLCHA----LKHQ-----------ERVIYP-L-F-DRARDIAIAGAAEVGPECRVAIIEGNYLLFDA 138 (208)
T ss_dssp HHHHHHHH----HHHC-----------SCEEEE-E-E-ETTTTEEEEEEEEECTTCCEEEEEESSTTBCS
T ss_pred HHHHHHHH----HhcC-----------Cceecc-c-C-CccccCCCCCceEEcCCCcEEEECCceeccCC
Confidence 11111111 1011 111111 1 1 12234799999999998 99999999988988
No 138
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.33 E-value=4e-14 Score=135.90 Aligned_cols=124 Identities=15% Similarity=0.032 Sum_probs=79.3
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e 174 (382)
-+++.+++|+||||||||||++.|.+++...| .+ + +.+.+|+||..+++ .+..+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g------~~------------------~-~~~~iv~~D~f~~~-~~~~~ 81 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY------GG------------------E-KSIGYASIDDFYLT-HEDQL 81 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH------GG------------------G-SCEEEEEGGGGBCC-HHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcC------CC------------------C-ceEEEeccccccCC-hHHHH
Confidence 35688999999999999999999999987433 10 0 13455599988777 47777
Q ss_pred hHHHHHh---hhh-cCcc---ccccccccCcccccc------c--cccccccCCCccceeeecceeeeehhHHHHHHHHh
Q 016817 175 GLEELSS---WMS-EGVH---HNQRCLRSDDCALMK------N--DAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK 239 (382)
Q Consensus 175 ni~~~~~---~~~-~~~~---~~~~~~~~l~~~~L~------~--~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE 239 (382)
|+.+... .+. .+.+ +.+...+.++.+.-. + .+. .+...+||||+||+++|++.+.+|+|||+||
T Consensus 82 ~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG 160 (290)
T 1odf_A 82 KLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFILEG 160 (290)
T ss_dssp HHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEEEEE
T ss_pred HHhccccccchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEEEeC
Confidence 7754210 010 0111 112222233322111 1 122 5667899999999999844333899999999
Q ss_pred ---cCCCCc
Q 016817 240 ---AGDSKP 245 (382)
Q Consensus 240 ---~LD~~~ 245 (382)
++|+..
T Consensus 161 ~~~~ld~~~ 169 (290)
T 1odf_A 161 WFLGFNPIL 169 (290)
T ss_dssp SSTTCCCCC
T ss_pred ccccCCccc
Confidence 799875
No 139
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.29 E-value=6.7e-14 Score=135.33 Aligned_cols=140 Identities=15% Similarity=0.044 Sum_probs=76.9
Q ss_pred HHHHhhhccc-CCeeeecCCcccC--C--CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeee---EeecCCCcc
Q 016817 69 LRHKFLSYRS-GDFWIPIGGIQKG--G--MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNSS 139 (382)
Q Consensus 69 i~nvs~~y~~-~~~~v~~~vL~~i--s--l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i---~G~~i~~~~ 139 (382)
++++...|.. +-..+...+.++. + +++.+|++++|+||||||||||+|+|+|+.+ .+|+|.+ +|+.+....
T Consensus 139 ~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~ 218 (307)
T 1t9h_A 139 IQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV 218 (307)
T ss_dssp HHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC
T ss_pred HHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH
Confidence 6778888743 2222211233433 3 6788999999999999999999999999998 8999998 887654221
Q ss_pred cceeehhhhhhhHhhhccceeeEeCCCCC----hhhhhhhHHH-HH-hh-h------hc---CccccccccccCcccccc
Q 016817 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFN----YNRVHEGLEE-LS-SW-M------SE---GVHHNQRCLRSDDCALMK 203 (382)
Q Consensus 140 ~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~----~~tv~eni~~-~~-~~-~------~~---~~~~~~~~~~~l~~~~L~ 203 (382)
.. ++ ..+||++|+|.+.. .+++ +++.. +. .. + .. .......+.++++.++|.
T Consensus 219 ~~----------~~-~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~ 286 (307)
T 1t9h_A 219 EL----------IH-TSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELK 286 (307)
T ss_dssp CE----------EE-ETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSC
T ss_pred HH----------hh-cCCEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCCh
Confidence 10 11 13799999987654 5677 77731 11 10 1 11 112234577888999997
Q ss_pred ccccccccCCCccceeee
Q 016817 204 NDAEIDDLKSSPKYVLRR 221 (382)
Q Consensus 204 ~~~~~~~~~~LSGGqkQR 221 (382)
+... +...+|+.|++||
T Consensus 287 ~~r~-~~y~~lls~~~~~ 303 (307)
T 1t9h_A 287 QYRY-DHYVEFMTEIKDR 303 (307)
T ss_dssp HHHH-HHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHhhc
Confidence 5444 3444566677663
No 140
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.28 E-value=3.8e-13 Score=129.85 Aligned_cols=134 Identities=13% Similarity=-0.022 Sum_probs=93.6
Q ss_pred cCchhHHHHHhhhcccCCeeeecCCcccCCCCC-------------------CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI-------------------PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 63 ~~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i-------------------~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
...+|+++||++.|. . ++++++|.+ ++|+++||+||||||||||+++|+|++.
T Consensus 34 ~~~~i~~~~v~~~y~--~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL--P------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HCTTCCHHHHHHTHH--H------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CccccchHhHHHHHH--H------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999993 2 589999988 8999999999999999999999999875
Q ss_pred ---ccceeee---EeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccccccC
Q 016817 124 ---RSGLVLF---AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSD 197 (382)
Q Consensus 124 ---~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l 197 (382)
++|+|.+ ||.... . ..+. .+|++ |++.+++.+++.+++..+.... .+..
T Consensus 106 ~~~~~G~i~vi~~d~~~~~----------~---~~~~-~~~~v-q~~~~~~~~~~~~~~~~~~~l~-~~~~--------- 160 (308)
T 1sq5_A 106 RWPEHRRVELITTDGFLHP----------N---QVLK-ERGLM-KKKGFPESYDMHRLVKFVSDLK-SGVP--------- 160 (308)
T ss_dssp TSTTCCCEEEEEGGGGBCC----------H---HHHH-HHTCT-TCTTSGGGBCHHHHHHHHHHHT-TTCS---------
T ss_pred hCCCCCeEEEEecCCccCc----------H---HHHH-hCCEe-ecCCCCCCccHHHHHHHHHHHh-CCCC---------
Confidence 5899999 765321 0 1232 68888 8777777889988887654221 1100
Q ss_pred ccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh
Q 016817 198 DCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK 239 (382)
Q Consensus 198 ~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE 239 (382)
. .. .+....+. .+|+..+.+.+.+|+++|+|.
T Consensus 161 -~------i~-~P~~~~~~--~~~~~~~~~~~~~~~ivIlEG 192 (308)
T 1sq5_A 161 -N------VT-APVYSHLI--YDVIPDGDKTVVQPDILILEG 192 (308)
T ss_dssp -C------EE-ECCEETTT--TEECTTCCEEEC-CCEEEEEC
T ss_pred -c------ee-cccccccc--cCcccccceecCCCCEEEECc
Confidence 0 01 11111222 356665556667788999988
No 141
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.22 E-value=3.1e-14 Score=143.11 Aligned_cols=164 Identities=13% Similarity=0.028 Sum_probs=98.8
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeE-----
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY----- 162 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q----- 162 (382)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+...... .+|++++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----~i~~~~ftTl~p---------------~~G~V~~~~~~~ 206 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----KIAPYPFTTLSP---------------NLGVVEVSEEER 206 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----EECCCTTCSSCC---------------EEEEEECSSSCE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----cccCcccceecc---------------eeeEEEecCcce
Confidence 578999999999999999999999999999998743 122222111111 2222222
Q ss_pred -----eCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHH
Q 016817 163 -----DSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKA 237 (382)
Q Consensus 163 -----~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLL 237 (382)
.+.+.........+. ...+ ...+++..++..+++. +.++.+||+|++|++++|++|+..|.+|++
T Consensus 207 ~~l~DtpGli~~a~~~~~L~--~~fl----~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLG--LEFL----RHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSC--HHHH----HHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred EEEEeccccccchhhhhhhh--HHHH----HHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 222221111000000 0000 0112344455666664 367789999999999999999999999988
Q ss_pred HhcCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 238 LKAGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 238 DE~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
-.+|+... ...+.+.+.. ++.+.++++||.- .-..+..+.+.+.
T Consensus 277 -NKlDl~~~-~~~~~l~~~l--~~~g~~vi~iSA~-~g~gi~eL~~~i~ 320 (416)
T 1udx_A 277 -NKVDLLEE-EAVKALADAL--AREGLAVLPVSAL-TGAGLPALKEALH 320 (416)
T ss_dssp -ECCTTSCH-HHHHHHHHHH--HTTTSCEEECCTT-TCTTHHHHHHHHH
T ss_pred -ECCChhhH-HHHHHHHHHH--HhcCCeEEEEECC-CccCHHHHHHHHH
Confidence 56888877 4444444432 3457788877742 2223555555443
No 142
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.21 E-value=7.3e-13 Score=117.02 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=31.6
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G 126 (382)
+|++++|+.++|+||||+|||||+++|++.+. .+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 56778899999999999999999999999987 665
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.20 E-value=1.1e-12 Score=113.69 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=32.5
Q ss_pred hhHHHHHHHHh--cCCCCcchhhhhhccCccccccCCCC-eEEEec
Q 016817 229 SNIAEIYKALK--AGDSKPLDATKRLFSAPGLRKCNENP-ILILTH 271 (382)
Q Consensus 229 ~~~P~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g~t-iIiiTH 271 (382)
+.+|++|++|| .+++..+..+++++.++ .+.|++ +|++||
T Consensus 81 ~~~~~lLilDE~~~~~~~~~~~l~~li~~~---~~~g~~~iiits~ 123 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEEQALLFSIFNRF---RNSGKGFLLLGSE 123 (149)
T ss_dssp GGGCSEEEEESTTCCCSHHHHHHHHHHHHH---HHHTCCEEEEEES
T ss_pred HhCCCEEEEeCccccChHHHHHHHHHHHHH---HHcCCcEEEEECC
Confidence 45789999999 88887788899999887 446788 777777
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.18 E-value=1.7e-13 Score=123.74 Aligned_cols=33 Identities=3% Similarity=0.073 Sum_probs=29.1
Q ss_pred eee-eehhHHHHHHHHh---cCCCCcchhhhhhccCc
Q 016817 224 FAM-VVSNIAEIYKALK---AGDSKPLDATKRLFSAP 256 (382)
Q Consensus 224 IAr-aL~~~P~iLLLDE---~LD~~~~~~i~~~l~~l 256 (382)
.|| +++.+|++++||| ++|..+...|.+.|.+.
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~ 152 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAA 152 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 567 8999999999999 99999999998888765
No 145
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.17 E-value=1.4e-13 Score=141.86 Aligned_cols=75 Identities=16% Similarity=-0.023 Sum_probs=66.7
Q ss_pred cccCCC-ccceeeecceeeeehhHH--HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhh
Q 016817 209 DDLKSS-PKYVLRRVDFAMVVSNIA--EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLD 282 (382)
Q Consensus 209 ~~~~~L-SGGqkQRvaIAraL~~~P--~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~ 282 (382)
+++.+| ||||+|||+|||||+.+| ++||||| +||+.++..+.+.|+++ .+ |.|||+||||+++ +. .|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~---~~-~~~vi~itH~~~~--~~-~~ 464 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL---AD-TRQVLVVTHLAQI--AA-RA 464 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH---HH-HSEEEEECCCHHH--HH-HS
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH---hC-CCEEEEEecCHHH--HH-hC
Confidence 456778 999999999999999999 9999999 99999999999999998 33 8999999997665 65 58
Q ss_pred hhhhhhhh
Q 016817 283 ARLKICEY 290 (382)
Q Consensus 283 d~v~ll~~ 290 (382)
|+++++++
T Consensus 465 d~~~~~~~ 472 (517)
T 4ad8_A 465 HHHYKVEK 472 (517)
T ss_dssp SEEEEEEC
T ss_pred CEEEEEec
Confidence 89888866
No 146
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.16 E-value=3.1e-13 Score=124.40 Aligned_cols=181 Identities=10% Similarity=0.096 Sum_probs=71.3
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHH-HhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~-Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 165 (382)
..+++||++++|++++|+||||||||||+++|+ |+++. ..++.++...... . . .+ ..++|.|+++.
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~~~~~~~~~~~~~------~-g-~~-~g~~~~~~~~~ 82 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----IVKSVSVTTRAAR------K-G-EK-EGKDYYFVDRE 82 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----C----EEECCCEESSCCC------T-T-CC-BTTTBEECCHH
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----cccccccCCCCCC------c-c-cc-CCCeEEEecHH
Confidence 488999999999999999999999999999999 99852 1222211100000 0 0 00 14557777655
Q ss_pred CCChhhhhhhHHHHHhhhh--cCccccccccccCccccccccccccccCCCccceeeec-c-eeeeehhHHHHHHHHh--
Q 016817 166 GFNYNRVHEGLEELSSWMS--EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV-D-FAMVVSNIAEIYKALK-- 239 (382)
Q Consensus 166 l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv-a-IAraL~~~P~iLLLDE-- 239 (382)
.|..++..+++........ .+. ..+.+.++++.-..- .+. -.+.. ...-++++ . ...+++..|+..+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v-ild-~~~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl 158 (231)
T 3lnc_A 83 EFLRLCSNGEIIEHAEVFGNFYGV-PRKNLEDNVDKGVST-LLV-IDWQG-AFKFMEMMREHVVSIFIMPPSMEELRRRL 158 (231)
T ss_dssp HHHHHHHTTCEEEEEEETTEEEEE-ECTTHHHHHHHTCEE-EEE-CCHHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC-
T ss_pred HhhhhhhcCceehhhhhccccCCC-CHHHHHHHHHcCCeE-EEE-cCHHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHH
Confidence 5544444433311000000 000 011111111110000 000 00000 11124555 2 3446677888889999
Q ss_pred -cCCCCcchhhhhhccCccc--cccCCCCeEEEecCCCCChhhhhhhhhh
Q 016817 240 -AGDSKPLDATKRLFSAPGL--RKCNENPILILTHGDMLSTEERLDARLK 286 (382)
Q Consensus 240 -~LD~~~~~~i~~~l~~l~~--~~~~g~tiIiiTHd~~l~~~~~~~d~v~ 286 (382)
+.|..+...+.+.|.+... .......+++++| +++++..-...++
T Consensus 159 ~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~--~~e~~~~~l~~~i 206 (231)
T 3lnc_A 159 CGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNE--DIEETADRISNIL 206 (231)
T ss_dssp -------------CHHHHHHHHTTGGGSSEEEECS--SHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECc--CHHHHHHHHHHHH
Confidence 6666666555555543210 1123468889998 4544555444443
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.16 E-value=3.6e-12 Score=114.22 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=49.7
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
|+++++|++++|+||||||||||+++|+|+++ .+.+++..+...... ..+ ..++|+||++.+|+.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~ 67 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRP---------GDQ-EGVDYFFIDETRFQAMV 67 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCT---------TCC-BTTTBEECCHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCch---------hHh-cCceEEeccHHHHHHHH
Confidence 57788999999999999999999999999975 455655543221110 012 37899999987777777
Q ss_pred hhhhH
Q 016817 172 VHEGL 176 (382)
Q Consensus 172 v~eni 176 (382)
+.+++
T Consensus 68 ~~~~~ 72 (205)
T 3tr0_A 68 KEGAF 72 (205)
T ss_dssp HHTCE
T ss_pred hcCcE
Confidence 65554
No 148
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=1.1e-12 Score=127.41 Aligned_cols=134 Identities=8% Similarity=-0.005 Sum_probs=70.9
Q ss_pred eeeeeecccCCCchhHHHHHHH-hhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhhH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS-VLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G-l~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni 176 (382)
..+.|.||||+|||||+++|+| ++. ..|.+.++|.+...... .+ ..+++++|.+.+.-..+ + .
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~--~-~ 101 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-----------RK-LELNVVSSPYHLEITPS--D-M 101 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------------------CCEECSSEEEECCC-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-----------cc-ceeeeecccceEEecHh--h-c
Confidence 3489999999999999999999 667 79999999875431110 12 36888888653211000 0 0
Q ss_pred HHHHhhhhcCc--cccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh--cCCCCcchhhhhh
Q 016817 177 EELSSWMSEGV--HHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--AGDSKPLDATKRL 252 (382)
Q Consensus 177 ~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--~LD~~~~~~i~~~ 252 (382)
+... ..++.+.++.+..++.+. . +||| +..+|+++++|| .||+..+..+++.
T Consensus 102 -------~~~~~~~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~L~~~~~~~L~~~ 157 (354)
T 1sxj_E 102 -------GNNDRIVIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANSLTKDAQAALRRT 157 (354)
T ss_dssp ---------CCHHHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTSSCHHHHHHHHHH
T ss_pred -------CCcchHHHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccccCHHHHHHHHHH
Confidence 0000 000111122222222211 1 5676 778899999999 9999999999999
Q ss_pred ccCccccccCCCCeEEEecCCCC
Q 016817 253 FSAPGLRKCNENPILILTHGDML 275 (382)
Q Consensus 253 l~~l~~~~~~g~tiIiiTHd~~l 275 (382)
|.+.. .+.++|++||++..
T Consensus 158 le~~~----~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 158 MEKYS----KNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHST----TTEEEEEEESCSCS
T ss_pred HHhhc----CCCEEEEEeCCHHH
Confidence 98862 46899999997643
No 149
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.12 E-value=2.9e-13 Score=120.38 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=62.9
Q ss_pred cccCCCccceeeecceeeeehhHH----HHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhh
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIA----EIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERL 281 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P----~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~ 281 (382)
+.+..||||||||++|||+|+.+| +++|||| +||+.++..+.+.|+++. .+.++|+|||+.. ....
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~----~~~~~ivith~~~---~~~~ 132 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS----KESQFIVITLRDV---MMAN 132 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHH---HHTT
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc----cCCEEEEEEecHH---HHHh
Confidence 678899999999999999999875 8999999 999999999999999873 3568999999543 3457
Q ss_pred hhhhhhhh
Q 016817 282 DARLKICE 289 (382)
Q Consensus 282 ~d~v~ll~ 289 (382)
||+++.+.
T Consensus 133 ad~i~~v~ 140 (173)
T 3kta_B 133 ADKIIGVS 140 (173)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 88877553
No 150
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.12 E-value=1.2e-11 Score=126.22 Aligned_cols=51 Identities=25% Similarity=0.323 Sum_probs=48.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCc
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS 138 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~ 138 (382)
+|+++||+|++ ++++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGS 70 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccC
Confidence 69999999999 9999999999999999999999999 899999999987643
No 151
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.09 E-value=1.5e-12 Score=119.51 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=34.5
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh--hc------ccceeeeEeec
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV--LS------RSGLVLFAQTS 134 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl--~~------~~G~I~i~G~~ 134 (382)
-+++|++++|+||||||||||++.|++. .+ ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4789999999999999999999999994 43 25778888764
No 152
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=1.8e-11 Score=122.09 Aligned_cols=159 Identities=9% Similarity=-0.035 Sum_probs=98.4
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHH------------hhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccc--
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYS------------VLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG-- 158 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~G------------l~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig-- 158 (382)
++++|..++|+|+||||||||+|+|+| ... .+|.|.+.|..+... ......+ +.++
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l--------~~~~~~~-~~v~~~ 86 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWL--------CEAYKPK-SRVPAF 86 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHH--------HHHHCCS-EEECEE
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhh--------hhhcccc-cccCcc
Confidence 677899999999999999999999999 334 578888876421100 0000001 1232
Q ss_pred -eeeEeCCCCChhhhhhhH--HHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHH--H
Q 016817 159 -FCVYDSRGFNYNRVHEGL--EELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIA--E 233 (382)
Q Consensus 159 -~v~Q~~~l~~~~tv~eni--~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P--~ 233 (382)
.+.+.+.++...+..+++ .+.. .+ . .+..++..+...+ +..+..+||+. +| +
T Consensus 87 i~lvD~pGl~~~~s~~e~L~~~fl~-~i-r------~~d~il~Vvd~~~---d~~i~~v~~~~------------dP~~d 143 (392)
T 1ni3_A 87 LTVFDIAGLTKGASTGVGLGNAFLS-HV-R------AVDAIYQVVRAFD---DAEIIHVEGDV------------DPIRD 143 (392)
T ss_dssp EEEECTGGGCCCCCSSSSSCHHHHH-HH-T------TCSEEEEEEECCC---TTCSSCCSSSS------------CHHHH
T ss_pred eEEEeccccccCCcHHHHHHHHHHH-HH-H------HHHHHHHHHhccc---cceeeeecccc------------Ccchh
Confidence 444545555555555544 1111 11 1 1122233333322 24455577763 89 9
Q ss_pred HHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhh-hhhh
Q 016817 234 IYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLK-ICEY 290 (382)
Q Consensus 234 iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~-ll~~ 290 (382)
++++|| .+|+......++.+..+. ...|.|++ +| ....+..+|+++. +|++
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~--~~~g~ti~--sh--~~~~~~~l~~~i~~~L~~ 198 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKIT--SRGANTLE--MK--AKKEEQAIIEKVYQYLTE 198 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSSCSSS--HH--HHHHHHHHHHHHHHHHHT
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHH--HhcCCccc--cc--cHHHHHHHHHHHHHHhcc
Confidence 999999 899999888888887761 23477764 99 5555888999988 6653
No 153
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.01 E-value=1.2e-12 Score=134.48 Aligned_cols=162 Identities=13% Similarity=0.018 Sum_probs=94.1
Q ss_pred CCCCCCceeeeeeecccCCCchhHHHHHHH--hhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCC
Q 016817 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYS--VLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167 (382)
Q Consensus 91 isl~i~~Ge~~alvGpnGsGKSTLl~~i~G--l~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~ 167 (382)
+++++.++..+.|.|++||||||++++|.. ++. +.|++.+.+.|.+... ++.+..+
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e---------------------l~~~~~l 218 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE---------------------LSVYEGI 218 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG---------------------GGGGTTC
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh---------------------hhhhccC
Confidence 567788899999999999999999999875 445 6789998887654210 0111111
Q ss_pred Chh--hhhhhHHHHHhhhhcCccccccccccCccccccccc--cccccCCCccceeeec----------ceeeeehhHHH
Q 016817 168 NYN--RVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDA--EIDDLKSSPKYVLRRV----------DFAMVVSNIAE 233 (382)
Q Consensus 168 ~~~--tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~--~~~~~~~LSGGqkQRv----------aIAraL~~~P~ 233 (382)
|+. +|.++.......+.......++..+.+..+|+.+.. ..+....+||||+|+. ++|+++...|.
T Consensus 219 Phl~~~Vvtd~~~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 219 PHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp TTBSSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred CcccceeecCHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCc
Confidence 111 122222221111110001111223456666665321 1123457899999985 46888888898
Q ss_pred -HHHHHh---cCCCCcchhhhhhccCccc-cccCCCCeEEEecCCC
Q 016817 234 -IYKALK---AGDSKPLDATKRLFSAPGL-RKCNENPILILTHGDM 274 (382)
Q Consensus 234 -iLLLDE---~LD~~~~~~i~~~l~~l~~-~~~~g~tiIiiTHd~~ 274 (382)
++++|| .++ .....+.+.|.+++. .+..|.++|++||.+.
T Consensus 299 ivlvIDE~~~ll~-~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMM-TVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHH-HHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHh-hhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 788999 344 222344444444321 1345899999999766
No 154
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.98 E-value=1.6e-11 Score=118.66 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=79.3
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCC
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 168 (382)
.++++.++|++++|+|||||||||+++.|++++. ..|+|.+.+.|.. +.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~-------------------r~~a--------- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF-------------------RAAA--------- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT-------------------CHHH---------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc-------------------cHHH---------
Confidence 4567778999999999999999999999999998 7889999887532 1111
Q ss_pred hhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeec---ceeeeehhHHHHHHHHhcCCCCc
Q 016817 169 YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRV---DFAMVVSNIAEIYKALKAGDSKP 245 (382)
Q Consensus 169 ~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRv---aIAraL~~~P~iLLLDE~LD~~~ 245 (382)
.+++... ++.+++. . ..++|||+.|++ +|++++..+|+++|+|++-+...
T Consensus 148 ----~eqL~~~-----------------~~~~gl~-~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~ 200 (306)
T 1vma_A 148 ----IEQLKIW-----------------GERVGAT-V-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHT 200 (306)
T ss_dssp ----HHHHHHH-----------------HHHHTCE-E-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred ----HHHHHHH-----------------HHHcCCc-E-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhh
Confidence 1112111 1122332 1 235689999999 89999999999999999223566
Q ss_pred chhhhhhccCc
Q 016817 246 LDATKRLFSAP 256 (382)
Q Consensus 246 ~~~i~~~l~~l 256 (382)
...+++.++++
T Consensus 201 ~~~l~~eL~~l 211 (306)
T 1vma_A 201 KKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 155
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.93 E-value=3.6e-12 Score=133.88 Aligned_cols=163 Identities=10% Similarity=-0.056 Sum_probs=97.0
Q ss_pred HHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-cc-ceeeeEeecCCCcccceeehhh
Q 016817 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQTSSGNSSHTITMYME 147 (382)
Q Consensus 70 ~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~-G~I~i~G~~i~~~~~~~~~~~~ 147 (382)
++++.-|+... +++++++.+..|+.++|+||||+|||||+++|+++++ .. |.+.+++.+......
T Consensus 38 ~~l~~i~G~~~------~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p------- 104 (604)
T 3k1j_A 38 KLIDQVIGQEH------AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMP------- 104 (604)
T ss_dssp SHHHHCCSCHH------HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSC-------
T ss_pred cccceEECchh------hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCC-------
Confidence 34455564333 6899999999999999999999999999999999998 54 888888875543222
Q ss_pred hhhhHhhhccceeeEeC----------------------CCCChhhhhhhHHHHHhhhhcCccc-cccccccCccccccc
Q 016817 148 EHNVMRSLQSGFCVYDS----------------------RGFNYNRVHEGLEELSSWMSEGVHH-NQRCLRSDDCALMKN 204 (382)
Q Consensus 148 ~~~~~r~~~ig~v~Q~~----------------------~l~~~~tv~eni~~~~~~~~~~~~~-~~~~~~~l~~~~L~~ 204 (382)
.++++++.. ..+..+++.+|+....... .+.+. .+......+.+|..+
T Consensus 105 --------~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~-~~~~~v~~~~~~~~~L~G~~~ 175 (604)
T 3k1j_A 105 --------RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGR-TKAPFIDATGAHAGALLGDVR 175 (604)
T ss_dssp --------EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTC-SSCCEEECTTCCHHHHHCEEC
T ss_pred --------cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccC-CCCCEEEcCCCCHHhcCceEE
Confidence 223332211 1122233333331000000 00000 000001112223221
Q ss_pred cccccccCCCccceeeecceeeeehhHHHHHHHHh--cCCCCcchhhhhhccC
Q 016817 205 DAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK--AGDSKPLDATKRLFSA 255 (382)
Q Consensus 205 ~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE--~LD~~~~~~i~~~l~~ 255 (382)
... .....+|+|++|++..++....++.+|++|| .|++..+..+++.|.+
T Consensus 176 ~~~-~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 176 HDP-FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCC-C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred ech-hhcCCccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHc
Confidence 111 2336799999999999988888999999999 8998888888888863
No 156
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.91 E-value=2.4e-10 Score=113.47 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=77.7
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l 166 (382)
+|+++++.+++|++++|+||||||||||+++|+|.. +|.+.... .... . ++ ..+|++||.+.+
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~~--~~~~---------~---~~-~~lg~~~q~~~~ 220 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKALNVN--LPLD---------R---LN-FELGVAIDQFLV 220 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEECCS--SCTT---------T---HH-HHHGGGTTCSCE
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEEEe--ccch---------h---HH-HHHHHhcchhHH
Confidence 599999999999999999999999999999999864 56665411 1100 0 11 135666665421
Q ss_pred -CChhhhhhh----------H---HHHHhhhhc------CccccccccccCccccccccccccccCCCccceeeecceee
Q 016817 167 -FNYNRVHEG----------L---EELSSWMSE------GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAM 226 (382)
Q Consensus 167 -~~~~tv~en----------i---~~~~~~~~~------~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAr 226 (382)
+...+.... + ..+...+.. .....+.+...+....+ +.....+++|++||++.+.
T Consensus 221 l~dd~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~l-----d~~~~~l~~~~~~rl~~~~ 295 (377)
T 1svm_A 221 VFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV-----TMNEYSVPKTLQARFVKQI 295 (377)
T ss_dssp EETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEE-----EECSCCCCHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCccc-----ChhHHhhcHHHHHHHhhhh
Confidence 121111110 0 000101100 00011111111222222 2455678999999999999
Q ss_pred eehhHHHHHH-HHh
Q 016817 227 VVSNIAEIYK-ALK 239 (382)
Q Consensus 227 aL~~~P~iLL-LDE 239 (382)
+++..|++++ ||+
T Consensus 296 ~l~~~pDLliyLd~ 309 (377)
T 1svm_A 296 DFRPKDYLKHCLER 309 (377)
T ss_dssp ECCCCHHHHHHHHT
T ss_pred ccCCCCCeEEEEeC
Confidence 9999999988 887
No 157
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.89 E-value=6.5e-11 Score=109.62 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=40.4
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccc-eeehhhhhhhHhhhccceeeEe
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHT-ITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~-~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
+|++.+ ++++|+||||||||||+++|+|++. ++|+|.++|.++...... .... .....+ ..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~--~~~~~~-~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKG--LHGKLK-AGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--------------------CGGGBC-SSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccc--hhhHhh-cCcEEEEEe
Confidence 345555 8999999999999999999999999 899999999876332211 0000 011123 378999984
No 158
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.87 E-value=2.2e-10 Score=114.52 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=33.5
Q ss_pred CCCceeeeeeecccCCCchhHHHHH--HHhhc-ccc-----eeeeEeec
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLM--YSVLS-RSG-----LVLFAQTS 134 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i--~Gl~~-~~G-----~I~i~G~~ 134 (382)
-|++|++++|+||||||||||++.+ +++.+ +.| .++|++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5789999999999999999999954 56665 444 78888874
No 159
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.87 E-value=3.1e-10 Score=116.51 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=92.9
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeeh
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~ 145 (382)
..+++++...|.... +++++++++++| +.|+||||+|||||+++|++... .|.|.++|.++.+...
T Consensus 40 k~~l~~lv~~l~~~~------~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~----- 105 (499)
T 2dhr_A 40 KEELKEIVEFLKNPS------RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFV----- 105 (499)
T ss_dssp HHHHHHHHHHHHCGG------GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCT-----
T ss_pred HHHHHHHHHHhhchh------hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhh-----
Confidence 567778877775433 599999999999 88999999999999999999765 6788888876542110
Q ss_pred hhhhhhHhhhccceeeEeCC-CCChhhhhhhHHHHHhhhhcCcc-ccccccccCccccccccccccccCCCccceeeecc
Q 016817 146 MEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEELSSWMSEGVH-HNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVD 223 (382)
Q Consensus 146 ~~~~~~~r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~~-~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRva 223 (382)
.. .. ..+..+||... ..+...+.+++..+......... ..+. ....+ ++...+||||++|+..
T Consensus 106 -g~---~~-~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e---------~~~~l-~~LL~~Ldg~~~~~~v 170 (499)
T 2dhr_A 106 -GV---GA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDE---------REQTL-NQLLVEMDGFEKDTAI 170 (499)
T ss_dssp -TH---HH-HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHH---------HHHHH-HHHHHHGGGCCSSCCC
T ss_pred -hh---HH-HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHH---------HHHHH-HHHHHHhcccccCccE
Confidence 00 11 24566777643 34445555666432100000000 0000 00111 2445679999999999
Q ss_pred eeeeehhHHHHHHHHh
Q 016817 224 FAMVVSNIAEIYKALK 239 (382)
Q Consensus 224 IAraL~~~P~iLLLDE 239 (382)
|++|..++|++ ||+
T Consensus 171 iviAatn~p~~--LD~ 184 (499)
T 2dhr_A 171 VVMAATNRPDI--LDP 184 (499)
T ss_dssp EEEECCSCGGG--SCT
T ss_pred EEEEecCChhh--cCc
Confidence 99999999987 787
No 160
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.86 E-value=2.6e-11 Score=111.32 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=33.7
Q ss_pred CcccC-CCCCCceeeeeeecccCCCchhHHHHH-HHhhccccee-eeEe
Q 016817 87 GIQKG-GMDIPPVITILLMGFSGSGKSSLVNLM-YSVLSRSGLV-LFAQ 132 (382)
Q Consensus 87 vL~~i-sl~i~~Ge~~alvGpnGsGKSTLl~~i-~Gl~~~~G~I-~i~G 132 (382)
.|+.+ .--+++|++++|+||||||||||+..+ .+..+..+.+ ++++
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46666 667899999999999999999996555 4554544444 4444
No 161
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.85 E-value=4.5e-10 Score=100.95 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=51.4
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCCh
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~ 169 (382)
+-.++.++|++++|+||||||||||+++|++.+ |.+.++|.++... .. .+...+|+++|+..+++.
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~--------~~---~~~~~~g~~~~~~~~~~~ 86 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSP--------EN---IATMQRGIPLTDEDRWPW 86 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCH--------HH---HHHHHTTCCCCHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccH--------HH---HHHHhcCCCCCCcccccH
Confidence 334667789999999999999999999999987 8999998754311 00 112357999998766666
Q ss_pred hhhhhhHH
Q 016817 170 NRVHEGLE 177 (382)
Q Consensus 170 ~tv~eni~ 177 (382)
+++.+++.
T Consensus 87 ~~~~~~~~ 94 (200)
T 4eun_A 87 LRSLAEWM 94 (200)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766664
No 162
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.81 E-value=3.8e-10 Score=105.93 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=35.0
Q ss_pred CchhHHHHH-hhhcccCCeeeecCCcccCCCCCCc---eeeeeeecccCCCchhHHHHHHHhh
Q 016817 64 DGLNELRHK-FLSYRSGDFWIPIGGIQKGGMDIPP---VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 64 ~~~i~i~nv-s~~y~~~~~~v~~~vL~~isl~i~~---Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++++++|+ +++|.++. . +|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~~~-~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQ-Q----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------C-H----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecCcc-h----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999 99993222 2 69999999999 9999999999999999999999865
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.79 E-value=1e-09 Score=108.06 Aligned_cols=135 Identities=12% Similarity=0.061 Sum_probs=81.0
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-cccee-eeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I-~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 171 (382)
-+++|+++.|.||+|||||||+..+++... ..|.+ ++++....+ + .|.+++|+.+|+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---------~----~ra~rlgv~~~~l~i~~~~~ 123 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---------P----VYAKNLGVDLKSLLISQPDH 123 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---------H----HHHHHHTCCGGGCEEECCSS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---------h----HHHHHcCCchhhhhhhhccC
Confidence 367899999999999999999999999988 67776 555542211 1 12236788777654444455
Q ss_pred hhhhHHHHHhhhhcCccccccccccCcccccccccccccc-CCCcc--ceeeecceeeeehhHHHHHHHHhcCCCCcchh
Q 016817 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDL-KSSPK--YVLRRVDFAMVVSNIAEIYKALKAGDSKPLDA 248 (382)
Q Consensus 172 v~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-~~LSG--GqkQRvaIAraL~~~P~iLLLDE~LD~~~~~~ 248 (382)
+.+.+........... .+.+-++. +...++ .+++| |++|++..||++. .
T Consensus 124 ~e~~l~~~~~l~~~~~---------~dlvVIDS-i~~l~~~~el~g~~G~~q~~~qar~la------------------~ 175 (356)
T 3hr8_A 124 GEQALEIVDELVRSGV---------VDLIVVDS-VAALVPRAEIEGAMGDMQVGLQARLMS------------------Q 175 (356)
T ss_dssp HHHHHHHHHHHHHTSC---------CSEEEEEC-TTTCCCHHHHTTCCCSSCSSHHHHHHH------------------H
T ss_pred HHHHHHHHHHHhhhcC---------CCeEEehH-hhhhcChhhhcccchhhHHHHHHHHHH------------------H
Confidence 5555543321111111 11112221 111222 33444 8899998888765 3
Q ss_pred hhhhccCccccccCCCCeEEEec
Q 016817 249 TKRLFSAPGLRKCNENPILILTH 271 (382)
Q Consensus 249 i~~~l~~l~~~~~~g~tiIiiTH 271 (382)
++..|..++ ++.+.|||+|.|
T Consensus 176 ~L~~L~~la--k~~~~tVI~inq 196 (356)
T 3hr8_A 176 ALRKIAGSV--NKSKAVVIFTNQ 196 (356)
T ss_dssp HHHHHHHHH--HTSSCEEEEEEE
T ss_pred HHHHHHHHH--HhcCCEEEEEee
Confidence 344455553 456899999988
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.79 E-value=4.2e-10 Score=100.10 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=76.1
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc------------ccceeeeEeecCC----CcccceeehhhhhhhHhhhccceeeE
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS------------RSGLVLFAQTSSG----NSSHTITMYMEEHNVMRSLQSGFCVY 162 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~------------~~G~I~i~G~~i~----~~~~~~~~~~~~~~~~r~~~ig~v~Q 162 (382)
-.++|+|+||||||||++.++|... .+|+|.++|+++. +..............++.....++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 109 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVY 109 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEE
Confidence 4689999999999999999999864 2678888876432 00000000000000011100111111
Q ss_pred eCCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-cC
Q 016817 163 DSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-AG 241 (382)
Q Consensus 163 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-~L 241 (382)
|.. . ....+++................+..++.++++.+. ..+.+.+|++|+.+|+++++|= ++
T Consensus 110 d~~--~-~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~~~~ld~Sal 174 (191)
T 1oix_A 110 DIA--K-HLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNGLSFIETSAL 174 (191)
T ss_dssp ETT--C-HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred ECc--C-HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcCCEEEEEeCC
Confidence 210 1 111233322111111101112234445555555422 1234678999999999998988 99
Q ss_pred CCCcchhhhhhccC
Q 016817 242 DSKPLDATKRLFSA 255 (382)
Q Consensus 242 D~~~~~~i~~~l~~ 255 (382)
|..+...+++.|.+
T Consensus 175 d~~~v~~l~~~l~~ 188 (191)
T 1oix_A 175 DSTNVEAAFQTILT 188 (191)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999888754
No 165
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.77 E-value=5.5e-11 Score=117.52 Aligned_cols=75 Identities=13% Similarity=0.003 Sum_probs=63.4
Q ss_pred cccCCCccceeeec------ceeeeehhH-HHHHHHHh---cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChh
Q 016817 209 DDLKSSPKYVLRRV------DFAMVVSNI-AEIYKALK---AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTE 278 (382)
Q Consensus 209 ~~~~~LSGGqkQRv------aIAraL~~~-P~iLLLDE---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~ 278 (382)
+++..|||||+||+ ++|++|+.+ |++||||| +||+..+..+.+.|.++ . .+.+||+||||+. +
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~---~-~~~~vi~~th~~~---~ 348 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV---K-SIPQMIIITHHRE---L 348 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC---C-SCSEEEEEESCGG---G
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh---c-cCCeEEEEEChHH---H
Confidence 45678999999988 567899999 99999999 99999999999999987 2 3468999999764 3
Q ss_pred hhhhhhhhhhhh
Q 016817 279 ERLDARLKICEY 290 (382)
Q Consensus 279 ~~~~d~v~ll~~ 290 (382)
..+||+++++++
T Consensus 349 ~~~~d~~~~l~k 360 (371)
T 3auy_A 349 EDVADVIINVKK 360 (371)
T ss_dssp GGGCSEEEEEEE
T ss_pred HhhCCEEEEEEe
Confidence 467888888864
No 166
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.71 E-value=2e-09 Score=96.64 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=44.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhccccee--eeEeecC
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLV--LFAQTSS 135 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I--~i~G~~i 135 (382)
+.+..++..++|++++|+||||||||||+++|++.+...|.+ +++|.++
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 477888888999999999999999999999999998877888 8898754
No 167
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.70 E-value=1.4e-08 Score=98.63 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=63.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCCCcccceeehhhhhhhHh----hhcccee-e
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMR----SLQSGFC-V 161 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r----~~~ig~v-~ 161 (382)
+++++|++++|++++|+||||+||||++..|++.+. ..|+|.+.+.|+..... ..+...+. +..++++ +
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a-----~~ql~~~~~~~~~~~l~vip~ 169 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA-----TQQLEEWIKTRLNNKVDLVKA 169 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHH-----HHHHHHHHTTTSCTTEEEECC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH-----HHHHHHHHhccccCCceEEeC
Confidence 378999999999999999999999999999999999 89999999987643211 11112221 1368888 7
Q ss_pred EeCCCCChhhhhhhHHH
Q 016817 162 YDSRGFNYNRVHEGLEE 178 (382)
Q Consensus 162 Q~~~l~~~~tv~eni~~ 178 (382)
|.....+..++.+++..
T Consensus 170 ~~~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 170 NKLNADPASVVFDAIKK 186 (320)
T ss_dssp SSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 77666666666676643
No 168
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.65 E-value=6.1e-09 Score=97.30 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=47.8
Q ss_pred CceeeeeeecccCCCchhHHHHHH---Hhhc-ccceee--------eEeecCCCcccceeehhhhhhhHhhhccceeeEe
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMY---SVLS-RSGLVL--------FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~---Gl~~-~~G~I~--------i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
++|++++|+|||||||||++++|+ |+.. ++|.|+ .+|.++.+.. ....++. .++++||+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~--------~~~~~~~-~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEE--------ALVPLAA-HLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSST--------THHHHHH-TCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHH--------HHHHHHH-cCCEEEec
Confidence 789999999999999999999999 9888 899999 8887653211 1223454 89999986
Q ss_pred C
Q 016817 164 S 164 (382)
Q Consensus 164 ~ 164 (382)
.
T Consensus 96 ~ 96 (252)
T 4e22_A 96 Q 96 (252)
T ss_dssp E
T ss_pred C
Confidence 4
No 169
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.64 E-value=6.9e-09 Score=92.10 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=28.5
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceeeeE
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA 131 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~ 131 (382)
|++++|+||||||||||+++|+|+++ ..|.+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~ 35 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSS 35 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeec
Confidence 57899999999999999999999998 45544433
No 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.64 E-value=1.8e-09 Score=96.17 Aligned_cols=142 Identities=14% Similarity=0.081 Sum_probs=73.9
Q ss_pred eeeeecccCCCchhHHHHHHHhh-----------c-ccceeeeEeecCC----CcccceeehhhhhhhHhhhccceeeEe
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL-----------S-RSGLVLFAQTSSG----NSSHTITMYMEEHNVMRSLQSGFCVYD 163 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~-----------~-~~G~I~i~G~~i~----~~~~~~~~~~~~~~~~r~~~ig~v~Q~ 163 (382)
.++|+|+||||||||++.++|.. + .+|+|.++|+++. +.+............++.....++..+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 58999999999999999999974 1 2578888876431 110000000000000111011111112
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeehhHHHHHHHHh-cCC
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK-AGD 242 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE-~LD 242 (382)
. ....+ .+++................+..++.++++.+... .....|++|+.+|+++++|= ++|
T Consensus 87 ~--~~~~s-~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~------------~~~~~a~~l~~~~~~~~~d~Sal~ 151 (199)
T 2f9l_A 87 I--AKHLT-YENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA------------VPTDEARAFAEKNNLSFIETSALD 151 (199)
T ss_dssp T--TCHHH-HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC------------SCHHHHHHHHHHTTCEEEECCTTT
T ss_pred C--cCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC------------cCHHHHHHHHHHcCCeEEEEeCCC
Confidence 1 12122 23332211111110111223444555555543211 12345889999999988888 999
Q ss_pred CCcchhhhhhccCc
Q 016817 243 SKPLDATKRLFSAP 256 (382)
Q Consensus 243 ~~~~~~i~~~l~~l 256 (382)
+.+...+++.|.+.
T Consensus 152 ~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 152 STNVEEAFKNILTE 165 (199)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998888664
No 171
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.64 E-value=1.5e-09 Score=99.87 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=38.5
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecC
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i 135 (382)
+.+-+.+.++|++++|+|+||||||||+++|+|+ .|+|.+.+.+.
T Consensus 10 ~~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~ 54 (230)
T 2vp4_A 10 KGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPV 54 (230)
T ss_dssp --CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTH
T ss_pred hCCccCCCCCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCH
Confidence 3444678899999999999999999999999998 78999998754
No 172
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.63 E-value=4e-10 Score=114.23 Aligned_cols=174 Identities=10% Similarity=-0.018 Sum_probs=101.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-eeeeEeecCCCcccceeehhhhhh-hHhhhccceeeEe
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGNSSHTITMYMEEHN-VMRSLQSGFCVYD 163 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~i~G~~i~~~~~~~~~~~~~~~-~~r~~~ig~v~Q~ 163 (382)
.|+++..-+++|+++.|.|++|+|||||+..+++... ..| .|.+.+.+.. ..+.. .+.....++-++.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s---------~~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS---------AQQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC---------HHHHHHHHHHHHHTCCHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC---------HHHHHHHHHHHHcCCCHHH
Confidence 4888888899999999999999999999999999877 556 6777665321 11111 0101122332221
Q ss_pred CCCCChhhhhhhHHHHHhhhhcCccccccccccCccccccccccccccCCCccceeeecceeeeeh--hHHHHHHHHh--
Q 016817 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS--NIAEIYKALK-- 239 (382)
Q Consensus 164 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSGGqkQRvaIAraL~--~~P~iLLLDE-- 239 (382)
.. ...++- ...+++.++++.++..+... ..+..+|.++.+ +.||.++ .+|+++++|+
T Consensus 263 l~-~g~l~~---------------~~~~~~~~a~~~l~~~~l~i-~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~ 323 (454)
T 2r6a_A 263 LR-TGKLTP---------------EDWGKLTMAMGSLSNAGIYI-DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQ 323 (454)
T ss_dssp HH-TSCCCH---------------HHHHHHHHHHHHHHSSCEEE-ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGG
T ss_pred Hh-cCCCCH---------------HHHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHH
Confidence 10 000000 00011222222222222222 335678999876 5566665 5799999999
Q ss_pred cCCCC-----cc----hhhhhhccCccccccCCCCeEEEec---------C--CCCC------hhhhhhhhhhhhhh
Q 016817 240 AGDSK-----PL----DATKRLFSAPGLRKCNENPILILTH---------G--DMLS------TEERLDARLKICEY 290 (382)
Q Consensus 240 ~LD~~-----~~----~~i~~~l~~l~~~~~~g~tiIiiTH---------d--~~l~------~~~~~~d~v~ll~~ 290 (382)
.+... ++ ..+.+.|+.++ ++.|++||+++| | +.++ .+...+|.|+++..
T Consensus 324 ~~~~~~~~~~~~~~~i~~i~~~Lk~lA--ke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 324 LIQGSGRSKENRQQEVSEISRSLKALA--RELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp GSCCSCC----CHHHHHHHHHHHHHHH--HHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHHHH--HHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 33321 12 45666677774 567999999999 3 3221 35667888888765
No 173
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.63 E-value=1.5e-09 Score=104.33 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=32.7
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccc-eeeeEee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQT 133 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~i~G~ 133 (382)
.+|++++|+|||||||||+++.|++.+. .+| +|.+-+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4799999999999999999999999998 688 5655544
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.58 E-value=2e-09 Score=105.70 Aligned_cols=187 Identities=13% Similarity=-0.012 Sum_probs=92.8
Q ss_pred HHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHH--hhc-ccceeeeEeecCCCcccceee
Q 016817 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS--VLS-RSGLVLFAQTSSGNSSHTITM 144 (382)
Q Consensus 68 ~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G--l~~-~~G~I~i~G~~i~~~~~~~~~ 144 (382)
+++++...|+..... .+|++++++++ .++|+|++|||||||++.|.| +++ .+|.++-....+.-.... .
T Consensus 10 ~l~~~~~~~~~~~~~---~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~--~ 81 (360)
T 3t34_A 10 KIQRACTALGDHGDS---SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID--D 81 (360)
T ss_dssp HTTTTTTSCSSCCSS---CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS--S
T ss_pred HHHHHHHhhCccccc---cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC--C
Confidence 567788888643211 16999999999 899999999999999999999 556 567665333211100000 0
Q ss_pred hhhhhhhHhhhccceeeEeCCCCChhhhhhhHHHHHhhhhcCccccccc----------cccCccccccccccccccCCC
Q 016817 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRC----------LRSDDCALMKNDAEIDDLKSS 214 (382)
Q Consensus 145 ~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~----------~~~l~~~~L~~~~~~~~~~~L 214 (382)
.......+.. ..+..++++.........++..... ...+....... ..+.+.-|+... ....+.
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~v~~~i~~~~~~~~g--~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~---~~~~q~ 155 (360)
T 3t34_A 82 GTREYAEFLH-LPRKKFTDFAAVRKEIQDETDRETG--RSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKV---AVDGQS 155 (360)
T ss_dssp CSCCEEEETT-STTCCBSCHHHHHHHHHHHHHHTSC--TTCCCCCSCEEEEEEETTSCSEEEEECCCBCSS---CCTTCC
T ss_pred cccceeeeec-CCCcccCCHHHHHHHHHHHHHHhcC--CCCCcccceEEEEEeCCCCCCeEEEECCCCCcC---CcCCCc
Confidence 0000000111 2344555432222111111111000 00111111000 112223333221 223456
Q ss_pred ccceeeecceeeeehhHHHHHHHHh--cCCCCcchhhhhhccCccccccCC-CCeEEEec
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK--AGDSKPLDATKRLFSAPGLRKCNE-NPILILTH 271 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~~g-~tiIiiTH 271 (382)
++.++|+..+++..+.+|+++|+.- +-+.......+++++.+ ...| .+++++|.
T Consensus 156 ~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~---~~~~~~~i~V~nK 212 (360)
T 3t34_A 156 DSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV---DPSGDRTFGVLTK 212 (360)
T ss_dssp SSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHS---CTTCTTEEEEEEC
T ss_pred hhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHh---cccCCCEEEEEeC
Confidence 7888899999999999999777644 22222234445566665 2234 57777777
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.58 E-value=2.5e-08 Score=88.93 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=28.5
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G 126 (382)
++|++|++++|+||||||||||+++|++++. +.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 4688999999999999999999999999985 445
No 176
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=3.5e-08 Score=88.41 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=25.0
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++|+||++++|++++|+||+||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 699999999999999999999999999999999876
No 177
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.49 E-value=1.2e-07 Score=90.77 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=51.6
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+.++++++.|+.. -++++|+ +|++++++|+||+||||++..|++++. ..|+|.+.+.++
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 6788999999532 3678888 899999999999999999999999999 789999998865
No 178
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.48 E-value=2.9e-08 Score=86.63 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=45.0
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCCChhhhhhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en 175 (382)
.+|++++|+|||||||||++++|++.+ |.+.+++.++... . .++...+|+.+|+...++.++..++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~~--------~---~~~~~~~g~~~~~~~~~~~~~~~~~ 71 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHPR--------R---NIEKMASGEPLNDDDRKPWLQALND 71 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCCH--------H---HHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccch--------H---HHHHhhcCcCCCccccccHHHHHHH
Confidence 569999999999999999999999975 8888888654210 0 1111246777776433344444443
No 179
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.45 E-value=4.9e-08 Score=85.70 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=34.9
Q ss_pred ccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 89 ~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
+++++++.+| +++|+||||||||||+++|.+++. ..|...
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~ 58 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAM 58 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 6778888899 999999999999999999999987 666543
No 180
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.41 E-value=2.5e-08 Score=89.40 Aligned_cols=71 Identities=14% Similarity=-0.007 Sum_probs=47.0
Q ss_pred ccceeeecceeeeehhHHHHHHHHh-cCCCCcchhhhhhccCccccccCCCCeEEEecCCCCChhhhhhhhhhhhhh
Q 016817 215 PKYVLRRVDFAMVVSNIAEIYKALK-AGDSKPLDATKRLFSAPGLRKCNENPILILTHGDMLSTEERLDARLKICEY 290 (382)
Q Consensus 215 SGGqkQRvaIAraL~~~P~iLLLDE-~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiTHd~~l~~~~~~~d~v~ll~~ 290 (382)
+.|+.+|..+++.+..+|+.+..++ .++|..+..+.+.+... .+.++|+.+|.+........++.+++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l~~~~~p~v~~~~~~~~~~~-----~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQ-----TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTC-----CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 6788999999999999998877777 77787777777777654 34578888895443222456677776653
No 181
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.39 E-value=2e-07 Score=83.73 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=37.9
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
..++|++++|+||||||||||+++|+++++ ..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 467899999999999999999999999998 789998887754
No 182
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.38 E-value=3.7e-08 Score=95.64 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=45.3
Q ss_pred HHHHhhhcccCCeeeecCCcccCCCCCCcee------eeeeecccCCCchhHHHHHHHhhc---ccceeeeEeec
Q 016817 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI------TILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTS 134 (382)
Q Consensus 69 i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge------~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~ 134 (382)
.+.+++.|+... +|++++..+.+++ ++||+||||||||||+++|++++. ..|.+.+-+.|
T Consensus 63 ~rll~~~~~~~~------~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 63 SRLLSFYVTARQ------TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred HHHHHHhhcchH------HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 345566665443 5777777776665 999999999999999999999987 36776655553
No 183
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.37 E-value=7.8e-08 Score=93.83 Aligned_cols=65 Identities=18% Similarity=0.089 Sum_probs=56.0
Q ss_pred hhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 66 ~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
+++.+++.+.|.... +++++++.+.+|.+++|+|++|+|||||++.|++.+. ..|+|.+-+.+..
T Consensus 30 ~ie~~~~~~~~~~~~------~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 30 LVESRHPRHQALSTQ------LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHCCCHHHHHHHHH------HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HhhcCCchhhhHHHH------HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 677788888886443 5899999999999999999999999999999999998 7888888777653
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.35 E-value=1.5e-07 Score=82.93 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=30.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc--ccceeeeEe
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQ 132 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~--~~G~I~i~G 132 (382)
+|++++|+||||||||||+++|+++++ ..|.|....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~tt 41 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 41 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccC
Confidence 589999999999999999999999986 367776543
No 185
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.33 E-value=4.3e-08 Score=101.78 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=37.1
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-eee-eEeecC
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVL-FAQTSS 135 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~-i~G~~i 135 (382)
..+++|++++|+|+||||||||+++|+|++. .+| +|. ++|.++
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3678999999999999999999999999998 665 785 787643
No 186
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.28 E-value=2.7e-08 Score=97.64 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
-+++|+++.|.||+|||||||+..++.... ..|.+.+-.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 467999999999999999999888887666 656655543
No 187
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.24 E-value=3.5e-07 Score=82.86 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=42.6
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh---c-ccceeee--------EeecCCCcccceeehhhhhhhHhhhccceeeEeC
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL---S-RSGLVLF--------AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~---~-~~G~I~i--------~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 164 (382)
+.+++|+|||||||||+.++|++.+ . ++|.+.. +|.++.+ ......++. .+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~--------~~~~~~~~~-~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVAS--------EDALVPLAS-HLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTC--------HHHHHHHHH-TCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccC--------HHHHHHHHH-hCceeeecc
Confidence 4689999999999999999999987 4 6898887 4543321 112233454 799999875
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.11 E-value=9e-07 Score=79.87 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=26.5
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999886
No 189
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.05 E-value=5e-06 Score=79.63 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=51.4
Q ss_pred hHHHHHhhhcccCCeeeecCCccc-CCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQK-GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~-isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
+-.+++.+.|+.. .++ ++|+.+ |++++++|+||+||||++..|++.+. ..|+|.+.+.+..
T Consensus 75 ~~~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 75 IVYDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4567888888543 346 888887 99999999999999999999999999 7889999888754
No 190
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.04 E-value=8.1e-07 Score=87.97 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=49.0
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcc--------------cCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQ--------------KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~--------------~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+.+.|+|+++.|+.... .|+ |+++.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 131 ~~ri~Fe~ltp~yP~er~-----~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANSRL-----RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCSBC-----CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCcc-----ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 457899999999986542 488 8999999999999999999999999999999886
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.03 E-value=1.9e-06 Score=77.85 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=26.9
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
|+...+|++++|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34556899999999999999999999999875
No 192
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.02 E-value=1e-06 Score=91.33 Aligned_cols=60 Identities=18% Similarity=0.091 Sum_probs=49.9
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
+-++++.+.|.... ++.++++++ +|++++|+||||+|||||+++|++... +.|+|.+.|.
T Consensus 84 ~G~~~vk~~i~~~~------~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 84 HGLEKVKERILEYL------AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp SSCHHHHHHHHHHH------HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred ccHHHHHHHHHHHH------HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34567777774322 588999999 799999999999999999999999998 8899988774
No 193
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.96 E-value=2.6e-06 Score=73.72 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.1
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccceeeeEe
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G 132 (382)
.|++++|+||||||||||+++|++.+. -+.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEec
Confidence 367899999999999999999999864 345554
No 194
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.95 E-value=8.8e-06 Score=81.73 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=50.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
+-.+++++.|+.. -++++|+ +|++++++|+|||||||++..|++.+. ..|+|.+.+.|+.
T Consensus 77 ~v~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred HHHHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 4466788888532 2577887 899999999999999999999999999 7899999888764
No 195
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.95 E-value=3.8e-06 Score=73.42 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=32.5
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccc--eeeeEeec
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG--LVLFAQTS 134 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G--~I~i~G~~ 134 (382)
.+|++++|+|++||||||++++|++.++..| .|.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 4689999999999999999999999886556 66677653
No 196
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.89 E-value=2.1e-06 Score=88.25 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=31.9
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+++++|++.+| +.+|+|+||||||||+.+|..+.
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 478889999999 99999999999999999998873
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.88 E-value=7.5e-06 Score=80.04 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=36.3
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
+++.+++|+|++|||||||+|.|.|.+. ..|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 4588999999999999999999999988 7899999887654
No 198
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.88 E-value=2.9e-07 Score=90.23 Aligned_cols=62 Identities=8% Similarity=-0.120 Sum_probs=42.6
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHH-h---cCCCCcchhhhhhccCccccccCCCCeEEEe--cCCCC
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKAL-K---AGDSKPLDATKRLFSAPGLRKCNENPILILT--HGDML 275 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLD-E---~LD~~~~~~i~~~l~~l~~~~~~g~tiIiiT--Hd~~l 275 (382)
..+..+|+|++|++. +.+...++-++++| + ++|......+++.+.+.. .+.++|+|. ||+.-
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVAD 294 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTCC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccCC
Confidence 456778999988776 54444566677888 5 567666666666666541 278899999 86543
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.87 E-value=4.9e-06 Score=74.44 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=28.7
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++-=++++|.+++|+|++|||||||++.|++.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 334578899999999999999999999999875
No 200
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.78 E-value=8.9e-06 Score=69.79 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=25.5
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 334455565 89999999999999999998554
No 201
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.73 E-value=2e-05 Score=69.23 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee-eEee
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-FAQT 133 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~-i~G~ 133 (382)
.+...+|.+++|+|++||||||+.+.|++.+. ..|.+. +++.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 45667899999999999999999999999988 677764 4543
No 202
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.71 E-value=1.3e-05 Score=72.03 Aligned_cols=42 Identities=26% Similarity=0.243 Sum_probs=36.7
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc--eeeeEeec
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTS 134 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G--~I~i~G~~ 134 (382)
+.+++|.+++|+|++||||||+.+.|++.+. ..| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 4567899999999999999999999999988 788 77787654
No 203
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.70 E-value=1.6e-05 Score=73.06 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=29.7
Q ss_pred cccCCCCCC---ceeeeeeecccCCCchhHHHHHHHhhcccceee
Q 016817 88 IQKGGMDIP---PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVL 129 (382)
Q Consensus 88 L~~isl~i~---~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~ 129 (382)
|.++||.+. +|.+++|.||+||||||+++.|+..+...+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 777787776 899999999999999999999999876523443
No 204
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.70 E-value=2.5e-06 Score=83.01 Aligned_cols=41 Identities=15% Similarity=0.031 Sum_probs=31.6
Q ss_pred HHHHHHHHh--cCCCCcchhhhhhccCcccccc---CCCCeEEEecCCC
Q 016817 231 IAEIYKALK--AGDSKPLDATKRLFSAPGLRKC---NENPILILTHGDM 274 (382)
Q Consensus 231 ~P~iLLLDE--~LD~~~~~~i~~~l~~l~~~~~---~g~tiIiiTHd~~ 274 (382)
+|.+|++|| .+|+.....+...+.++ .. .+.++|++||++.
T Consensus 125 ~~~vlilDE~~~l~~~~~~~L~~~~~~~---~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 125 LYMFLVLDDAFNLAPDILSTFIRLGQEA---DKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp CCEEEEEETGGGSCHHHHHHHHHHTTCH---HHHSSCCEEEEEEESSTH
T ss_pred CeEEEEEECccccchHHHHHHHHHHHhC---CCCCcCCEEEEEEECCch
Confidence 367999999 88887778888888775 22 4678999999664
No 205
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.69 E-value=5.4e-07 Score=97.10 Aligned_cols=62 Identities=11% Similarity=-0.100 Sum_probs=43.4
Q ss_pred cccCCCccceeeecceeeeehhHHHHHHHHh----cCCCCcchhhhhhccCccccccCCCCeEE-EecCC
Q 016817 209 DDLKSSPKYVLRRVDFAMVVSNIAEIYKALK----AGDSKPLDATKRLFSAPGLRKCNENPILI-LTHGD 273 (382)
Q Consensus 209 ~~~~~LSGGqkQRvaIAraL~~~P~iLLLDE----~LD~~~~~~i~~~l~~l~~~~~~g~tiIi-iTHd~ 273 (382)
..+.-+|+|+.+|..++++++.+++++|+|| +||......+++.+... .....+|++ .|||.
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~---~~~~~iIl~SAT~~~ 252 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR---RPDLKIIIMSATLDA 252 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH---CTTCEEEEEESCSCC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh---CCCceEEEEeccccH
Confidence 4556689999999999999999999999999 36654444444444433 223456666 48853
No 206
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.56 E-value=2.6e-05 Score=82.57 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc---ccceeeeEeecCCCcccceeehhhhhhhHhhhccceeeEeCCCC
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~---~~G~I~i~G~~i~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~ 167 (382)
|+++++|..++|+|++|+|||||++.|++... ..|+| .+|..+.+... .+ .+ +.+++.+|...++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~------~e---~~-~giti~~~~~~~~ 70 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTP------EA---KL-HRTTVRTGVAPLL 70 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSH------HH---HH-TTSCCSCEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCH------HH---Hh-cCCeEEecceEEe
Confidence 56788999999999999999999999998765 47888 56654433211 11 22 3788888875443
No 207
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.53 E-value=3.4e-05 Score=67.85 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=26.6
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999999999999875
No 208
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.52 E-value=3.3e-05 Score=69.01 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=26.1
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999988663
No 209
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.51 E-value=4.7e-05 Score=70.63 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=35.3
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeec
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTS 134 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~ 134 (382)
+.+.. ..+++.++.|+|++||||||+.+.|+..+. .|.+.+++..
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~ 67 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDS 67 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHH
Confidence 55554 677889999999999999999999998653 3456667653
No 210
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=7.1e-06 Score=79.33 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=40.3
Q ss_pred CcccCCCCCCceee--eeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 87 GIQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 87 vL~~isl~i~~Ge~--~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
+++.++..++.|++ +.+.||+|+||||+++++++.+. ..+.+.+.+.+.
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 47777777888887 99999999999999999999987 667666665543
No 211
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.50 E-value=8.8e-06 Score=79.93 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=35.7
Q ss_pred CchhHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 64 ~~~i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
.+.+.+.|++..|.... ++++++|+| +|+|+||+|||||++.|.|... ..|.+.
T Consensus 15 ~~~v~~~~l~~~~~~k~------~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKS------VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp ------CCHHHHHHTHH------HHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred CceEEeccchHHhCCee------ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 45789999999996543 588888876 8999999999999999988655 455443
No 212
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.46 E-value=4.6e-05 Score=68.57 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=25.9
Q ss_pred cCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 90 ~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.++++.+| +.+|+|||||||||++.+|.-.+.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 334555565 899999999999999999975543
No 213
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.43 E-value=4.9e-05 Score=67.47 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 214
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.37 E-value=7e-05 Score=66.54 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=27.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEee
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT 133 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~ 133 (382)
..+++|+|++||||||+.+.|++.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCC
Confidence 4589999999999999999999876 55566654
No 215
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.33 E-value=3.7e-05 Score=75.34 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=33.7
Q ss_pred CcccCCCCCCceee--eeeecccCCCchhHHHHHHHhhc
Q 016817 87 GIQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 87 vL~~isl~i~~Ge~--~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++.+++.+++|++ ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 57888889999988 99999999999999999999865
No 216
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.33 E-value=7.4e-05 Score=64.61 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.1
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999999853
No 217
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.32 E-value=8.7e-05 Score=70.83 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+-.++.+++|+|++|+|||||++.|.|.
T Consensus 4 ~~~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CCCEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3345668999999999999999999986
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.28 E-value=5.5e-05 Score=67.01 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=29.8
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+++++|+..++++ ++|+|++|+|||||++.+.+
T Consensus 15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 5899999999886 67999999999999999875
No 219
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.28 E-value=9.6e-05 Score=64.89 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=20.2
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+++++++..++. .++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 589999998877 568999999999999999987
No 220
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.27 E-value=0.00013 Score=64.40 Aligned_cols=35 Identities=26% Similarity=0.529 Sum_probs=28.0
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-c---cceeeeEee
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQT 133 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-~---~G~I~i~G~ 133 (382)
.+++|+|+||||||||++.|.+.+. . -|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999999876 3 355555543
No 221
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.26 E-value=9.6e-05 Score=74.19 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=29.6
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc-------------ccceeeeEeec
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS-------------RSGLVLFAQTS 134 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~-------------~~G~I~i~G~~ 134 (382)
-.++|+|+||+|||||+|.|+|... .+|.+.++|++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3799999999999999999999742 25777777764
No 222
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.26 E-value=4.9e-06 Score=81.18 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=34.1
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeee
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i 130 (382)
|+.+.--+.+|+++.|.|++|+|||||+.-++.... ..+.|.+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~ 79 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV 79 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 666666789999999999999999999999987655 3344433
No 223
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00015 Score=63.18 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.5
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999998643
No 224
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.21 E-value=0.00015 Score=66.76 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=30.5
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeec
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~ 134 (382)
++++++.+++| +.|+||+|+|||||+++|++... + -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 66677788877 88999999999999999999875 3 35555543
No 225
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.12 E-value=0.0002 Score=72.87 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=38.3
Q ss_pred hHHHHHhhhcccCCeeeecCCcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 67 i~i~nvs~~y~~~~~~v~~~vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+++++...|.... .++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 26 ~~l~e~v~~l~~~~------~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 26 EELKEVVEFLKDPS------KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHHHCTH------HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhChH------HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 34555555554332 488889999999 77999999999999999999764
No 226
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.12 E-value=0.00015 Score=61.97 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.3
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 227
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.11 E-value=0.00014 Score=64.65 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.6
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-cccee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLV 128 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I 128 (382)
+++|.|++||||||+++.|+..+. ....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999999887 43344
No 228
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.11 E-value=0.0002 Score=61.14 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++|+||+||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 229
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.10 E-value=0.0002 Score=65.36 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.6
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+-++|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999854
No 230
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.10 E-value=9.6e-05 Score=68.31 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
No 231
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.04 E-value=0.0002 Score=71.14 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=24.9
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.+..|..++|+|+||+|||||+|.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5667888999999999999999999987
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.04 E-value=0.00036 Score=70.11 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=35.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecCC
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i~ 136 (382)
++.+++++||+||||||++..|++.+. ..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 588999999999999999999999998 7889988777654
No 233
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.00 E-value=0.00032 Score=69.07 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=30.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
.+..++|+||||||||||++.|++... ..+.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 566789999999999999999998877 677777654
No 234
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.98 E-value=0.0003 Score=60.77 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=22.9
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
No 235
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.98 E-value=0.00021 Score=70.09 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=26.7
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+++..+++.+| +.+|+|||||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 45556677776 889999999999999999974
No 236
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.97 E-value=0.0002 Score=70.36 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=21.2
Q ss_pred ceee-eeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVIT-ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~-~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.|-. ++|+|++|||||||+|.|+|...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 3444 99999999999999999998753
No 237
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.96 E-value=0.00027 Score=61.09 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.9
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|++|+|||||++.++|-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 238
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.94 E-value=0.00034 Score=60.78 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.++.++.|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34567889999999999999999998544
No 239
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.92 E-value=0.00039 Score=60.63 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
No 240
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.91 E-value=0.00049 Score=60.47 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=26.4
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccceeeeEee
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT 133 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~ 133 (382)
..+++|+|++||||||+.+.|+.. |-..++.-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC----CCEEEccc
Confidence 458999999999999999999975 66666543
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.88 E-value=0.00039 Score=75.16 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=28.8
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+|.+++|+.+.|+||||||||||+++|++.+.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45678899999999999999999999999865
No 242
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.86 E-value=0.00037 Score=60.51 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=24.4
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhcccc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
|.+++|.|++||||||+.+.|+..+...|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999999997654333
No 243
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.85 E-value=0.00029 Score=61.25 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.4
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 244
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.85 E-value=0.00047 Score=61.81 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=22.0
Q ss_pred ceeeeeeecccCCCchhHHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 245
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.85 E-value=0.00045 Score=60.65 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998653
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.84 E-value=0.00039 Score=59.06 Aligned_cols=19 Identities=47% Similarity=0.868 Sum_probs=18.2
Q ss_pred eeeeecccCCCchhHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLM 118 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i 118 (382)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 247
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.83 E-value=0.00049 Score=63.84 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.0
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+++|+||||||||||.+.|++-+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998653
No 248
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.81 E-value=0.00048 Score=60.43 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+++|+|++|||||||+..|.+.+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhH
Confidence 789999999999999999999876
No 249
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.80 E-value=0.00047 Score=59.62 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=21.0
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+||+||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999765
No 250
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.78 E-value=0.00035 Score=63.69 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHH
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
.+.+|+.++++||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 345789999999999999999887754
No 251
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.72 E-value=0.00063 Score=59.10 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.3
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+..+.|+||+||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998654
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.72 E-value=0.00058 Score=60.80 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=19.6
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|+||||||||||++.|..-.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999998875543
No 253
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.00065 Score=59.83 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999765
No 254
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.66 E-value=0.00062 Score=62.00 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=22.8
Q ss_pred eeeeecccCCCchhHHHHHHHhhc-ccc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~-~~G 126 (382)
.++|+|++|+|||||++.|.|... .+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 589999999999999999998755 444
No 255
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.00074 Score=58.00 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 256
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.64 E-value=0.00088 Score=59.13 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=27.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccceee
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVL 129 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~ 129 (382)
+|.+++|.|+.||||||+.+.|+..+...|.+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~ 35 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVY 35 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEE
Confidence 477899999999999999999998776445443
No 257
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.64 E-value=0.00081 Score=63.70 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=28.9
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEe
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G 132 (382)
.-..|.++.|.|||||||||+.+.|+.-++ .|.+.+++
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~ 66 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDN 66 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEec
Confidence 345678999999999999999999986432 35555554
No 258
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.64 E-value=0.00082 Score=58.68 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.6
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
No 259
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.62 E-value=0.00084 Score=59.19 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.5
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999865
No 260
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.56 E-value=0.001 Score=58.97 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=24.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999997654
No 261
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.56 E-value=0.00091 Score=59.30 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=25.2
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++|.+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997665
No 262
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.54 E-value=0.00096 Score=57.95 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.1
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998643
No 263
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.54 E-value=0.00078 Score=63.90 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEee
Q 016817 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT 133 (382)
Q Consensus 93 l~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~ 133 (382)
+.+.++..+.|.||+|+|||||+++|++... .+-+.+++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~~~ 83 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGP 83 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEECHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEEhH
Confidence 3456677799999999999999999998754 344555543
No 264
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.52 E-value=0.001 Score=57.65 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.8
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998665
No 265
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.52 E-value=0.001 Score=58.09 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=23.2
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
+++|.|+.||||||+.+.|+..+...|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 589999999999999999998775334
No 266
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.52 E-value=0.00087 Score=62.47 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.6
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++|+|++|||||||++.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998743
No 267
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.50 E-value=0.0017 Score=61.03 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=27.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc-ccceee
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~ 129 (382)
...+.|.||+|+||||++++|++... ..|.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 45789999999999999999999987 566544
No 268
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.48 E-value=0.00092 Score=57.77 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=18.3
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 269
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0013 Score=57.00 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.8
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.+.+-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999753
No 270
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.39 E-value=0.0013 Score=57.61 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.6
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.+.+++|+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998754
No 271
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.37 E-value=0.0017 Score=56.33 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=24.5
Q ss_pred eeeeecccCCCchhHHHHHHHhhcccceeee
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLF 130 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i 130 (382)
+++|.|+.||||||+.+.|+..+...|-..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5899999999999999999987653344333
No 272
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.36 E-value=0.0021 Score=55.70 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.+++|+|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998654
No 273
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.34 E-value=0.0014 Score=54.97 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 274
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.32 E-value=0.0015 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 275
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.30 E-value=0.0015 Score=62.00 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=20.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++-+++|.||+||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999998654
No 276
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.27 E-value=0.0016 Score=54.30 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998864
No 277
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.27 E-value=0.0016 Score=54.26 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++++|+.|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 278
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.25 E-value=0.0017 Score=54.25 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 279
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.25 E-value=0.0022 Score=56.56 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
-....+++|.|+.||||||+.+.|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999998543
No 280
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.25 E-value=0.0016 Score=58.79 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=22.2
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998643
No 281
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.24 E-value=0.0017 Score=57.90 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+||+||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
No 282
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.24 E-value=0.0018 Score=55.38 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
No 283
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.24 E-value=0.0017 Score=54.54 Aligned_cols=22 Identities=45% Similarity=0.543 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 284
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.23 E-value=0.0018 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998754
No 285
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.21 E-value=0.0018 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 286
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.21 E-value=0.0026 Score=56.78 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.0
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 466789999999999999999998765
No 287
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.21 E-value=0.002 Score=57.75 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46689999999999999999998754
No 288
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.21 E-value=0.0019 Score=58.07 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998654
No 289
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.20 E-value=0.0019 Score=54.98 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
No 290
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.19 E-value=0.0019 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 291
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0017 Score=54.60 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.5
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999987
No 292
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.18 E-value=0.0019 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 293
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.17 E-value=0.002 Score=54.79 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 294
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.17 E-value=0.0019 Score=54.81 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999875
No 295
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.17 E-value=0.0016 Score=55.06 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4889999999999999999864
No 296
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.15 E-value=0.002 Score=55.89 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.6
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 297
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.14 E-value=0.0025 Score=56.29 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 298
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.13 E-value=0.0029 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.5
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999998765
No 299
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.13 E-value=0.0021 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+||+||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 300
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.13 E-value=0.0021 Score=54.71 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 301
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.13 E-value=0.002 Score=55.48 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998753
No 302
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.13 E-value=0.002 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998754
No 303
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.13 E-value=0.0027 Score=58.87 Aligned_cols=31 Identities=29% Similarity=0.619 Sum_probs=25.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccce
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGL 127 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~ 127 (382)
++.++.|+|++||||||+.+.|+..+...|.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~ 33 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNI 33 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999987553343
No 304
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.12 E-value=0.0013 Score=55.20 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=19.5
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3789999999999999998764
No 305
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.11 E-value=0.0018 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.6
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999764
No 306
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.08 E-value=0.0023 Score=53.62 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 307
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.08 E-value=0.0019 Score=60.62 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.1
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 308
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.07 E-value=0.0023 Score=54.69 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=21.6
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 309
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.07 E-value=0.0023 Score=54.82 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 310
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.07 E-value=0.0021 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
-.++|+|++|+|||||++.|.|-.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999999854
No 311
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.07 E-value=0.0023 Score=55.17 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=20.4
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999985
No 312
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.06 E-value=0.0026 Score=58.58 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+++|.|++||||||+.+.|+..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987543
No 313
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.05 E-value=0.0024 Score=54.22 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.-.++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999863
No 314
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.04 E-value=0.0021 Score=55.23 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999864
No 315
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.04 E-value=0.0025 Score=54.75 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 316
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.03 E-value=0.0024 Score=55.35 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 317
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.03 E-value=0.0025 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=19.8
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
-.++|+|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999976
No 318
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.03 E-value=0.0025 Score=53.99 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 319
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.01 E-value=0.0027 Score=64.36 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=34.6
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeE
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA 131 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~ 131 (382)
++.+ +.+-+|+..+|+||+|+|||||++.|++-.. ..|.|.+.
T Consensus 142 ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~ 185 (473)
T 1sky_E 142 VDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVF 185 (473)
T ss_dssp HHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEE
Confidence 4444 5666899999999999999999999998877 56666543
No 320
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.01 E-value=0.0014 Score=63.03 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=29.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
.+++..+.+ .|.-++|+|+||+|||||...+.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 488888888 588899999999999999999987
No 321
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.00 E-value=0.0027 Score=53.20 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.2
Q ss_pred eeeecccCCCchhHHHHHHHh
Q 016817 101 ILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl 121 (382)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 322
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.00 E-value=0.0026 Score=56.63 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred ceeeeeeecccCCCchhHHHHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
..-+++|+|+.||||||+.+.|+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999875
No 323
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.00 E-value=0.0018 Score=56.07 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=20.4
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998864
No 324
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.99 E-value=0.0027 Score=62.29 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.0
Q ss_pred eeeeeeecccCCCchhHHHHHHH
Q 016817 98 VITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
|-.++|+|.+|+|||||++.|.|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34689999999999999999998
No 325
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.99 E-value=0.0027 Score=60.92 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=25.4
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999876
No 326
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.99 E-value=0.0038 Score=62.68 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=33.9
Q ss_pred CCCCce--eeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 93 MDIPPV--ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 93 l~i~~G--e~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
|.+.++ .+++|+|++|+||||++..|++.+. ...+|.+-..|.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 555534 5999999999999999999999888 556677665554
No 327
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.98 E-value=0.0027 Score=54.74 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.6
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998665
No 328
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.98 E-value=0.0018 Score=55.10 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999763
No 329
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.95 E-value=0.003 Score=61.26 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=26.7
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
-+++|+++.|.||+|||||||+..++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999999863
No 330
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.95 E-value=0.0032 Score=57.85 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++-+++|.||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998544
No 331
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.94 E-value=0.0029 Score=60.70 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=26.9
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+++|+++.|.||+|||||||+..++....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 578999999999999999999999987643
No 332
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.94 E-value=0.0029 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5889999999999999999874
No 333
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.94 E-value=0.0029 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998743
No 334
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0029 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
No 335
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.93 E-value=0.0028 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 336
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.93 E-value=0.0029 Score=54.61 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 337
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.90 E-value=0.0016 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=20.2
Q ss_pred ceeeeeeecccCCCchhHHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999988863
No 338
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.90 E-value=0.0031 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.5
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
=.++|+|+.|+|||||++.+.+-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999874
No 339
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.89 E-value=0.004 Score=56.35 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=26.6
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
.+|.+++|.|+.||||||+++.|...+...|
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999998776444
No 340
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.87 E-value=0.0032 Score=53.61 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 341
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.87 E-value=0.0028 Score=68.47 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=34.9
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecC
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i 135 (382)
++.+.+++.+.|+||+|+|||||+++|++... .+-+.+++.++
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-~~~i~v~~~~l 547 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-CCCCCCCCSSS
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-CCEEEEechHh
Confidence 56678899999999999999999999999875 33556666554
No 342
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.85 E-value=0.0035 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 343
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.84 E-value=0.0033 Score=54.81 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 344
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.84 E-value=0.0031 Score=61.94 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999974
No 345
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.83 E-value=0.0034 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=18.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999876653
No 346
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.0034 Score=54.41 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 347
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.83 E-value=0.0034 Score=56.72 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.4
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
No 348
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.82 E-value=0.0053 Score=60.01 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=30.1
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhhc-cccee-eeEe
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV-LFAQ 132 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I-~i~G 132 (382)
+++|+++.|.||+|+|||||...++.... ..+.+ +++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 77999999999999999999988887655 43344 4444
No 349
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.82 E-value=0.0038 Score=58.76 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
..-+++|.|++||||||+.+.|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 350
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.81 E-value=0.0032 Score=60.01 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.9
Q ss_pred CceeeeeeecccCCCchhHHHHHHHh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.| +++|+|++|+|||||++.+.|-
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCC
Confidence 345 6999999999999999999975
No 351
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.81 E-value=0.0035 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 352
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.81 E-value=0.0035 Score=54.04 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 353
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.80 E-value=0.0036 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 354
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.80 E-value=0.0036 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.5
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 355
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.79 E-value=0.0038 Score=58.39 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.2
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++..+.|.||+|+|||||++.+++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 355688999999999999999998653
No 356
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.79 E-value=0.0037 Score=54.09 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 357
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.78 E-value=0.0024 Score=59.62 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||+|.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999987643
No 358
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.77 E-value=0.0026 Score=58.66 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=26.8
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.+.++..+.| +.|.||+|+|||||++.|+...
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 44555666666 7799999999999999999854
No 359
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.77 E-value=0.0034 Score=58.27 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.9
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999863
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.77 E-value=0.0038 Score=53.45 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
No 361
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.75 E-value=0.0039 Score=53.22 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998863
No 362
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.74 E-value=0.0041 Score=55.31 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++|+|+.|+|||||++.+++-..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999988654
No 363
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.73 E-value=0.0036 Score=57.50 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 364
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.73 E-value=0.0043 Score=56.83 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=22.8
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+|.++.|.|++||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999998776
No 365
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.72 E-value=0.0039 Score=54.63 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.1
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34468999999999999999999743
No 366
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.71 E-value=0.0049 Score=58.61 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+..+.|.||+|+|||||++.|++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 345688999999999999999998876
No 367
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.71 E-value=0.0043 Score=57.21 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=25.6
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSR 124 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~ 124 (382)
+|.+++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999988763
No 368
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.70 E-value=0.0042 Score=53.07 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.2
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
No 369
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.69 E-value=0.0049 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.5
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.|.||.|+|||||++.++..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998764
No 370
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.69 E-value=0.0042 Score=55.50 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998744
No 371
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.69 E-value=0.0042 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
No 372
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.68 E-value=0.0045 Score=59.00 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.1
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-+++|+|+.|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999984
No 373
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.0042 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 374
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.68 E-value=0.0045 Score=60.15 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997653
No 375
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.67 E-value=0.0046 Score=56.03 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=26.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G 126 (382)
+|.++.|-|++||||||+++.|...+...|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999999998877445
No 376
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.66 E-value=0.0043 Score=55.30 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 377
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.65 E-value=0.0044 Score=54.29 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 378
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.65 E-value=0.0066 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999863
No 379
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.65 E-value=0.0045 Score=52.72 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.2
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999885
No 380
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.64 E-value=0.0045 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 381
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.64 E-value=0.0045 Score=54.33 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 382
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.63 E-value=0.0051 Score=55.14 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
|-++.|+|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
No 383
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0048 Score=54.39 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=24.4
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
..++.|.-..--.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4455555444557899999999999999999873
No 384
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0046 Score=54.80 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988864
No 385
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.61 E-value=0.0052 Score=55.41 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=26.5
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
.++..-+.+. |..+.|+||+|||||||...|+.
T Consensus 24 ~lHa~~v~~~-g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 24 SMHGVLVDIY-GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp CEESEEEEET-TEEEEEECCCTTTTHHHHHHHHT
T ss_pred eeeEEEEEEC-CEEEEEECCCCCCHHHHHHHHHH
Confidence 3566555654 77899999999999999988875
No 386
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.59 E-value=0.0052 Score=59.65 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
++.++.|+||+|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56789999999999999999998644
No 387
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.58 E-value=0.005 Score=57.74 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 388
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.57 E-value=0.0049 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 389
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.57 E-value=0.0037 Score=53.77 Aligned_cols=25 Identities=16% Similarity=0.502 Sum_probs=21.2
Q ss_pred ceeeeeeecccCCCchhHHHHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999998863
No 390
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.005 Score=53.09 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=20.6
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 391
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.57 E-value=0.0044 Score=53.29 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999863
No 392
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.57 E-value=0.005 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
+.=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3446899999999999999999864
No 393
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.56 E-value=0.0049 Score=54.08 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=20.5
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 394
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.56 E-value=0.0046 Score=58.36 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.3
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 395
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.56 E-value=0.005 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.5
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999874
No 396
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.56 E-value=0.0045 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 397
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.54 E-value=0.0047 Score=57.79 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.9
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|..|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999863
No 398
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.54 E-value=0.0051 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.0
Q ss_pred eeeeeeecccCCCchhHHHHHHHh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.=.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 399
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.53 E-value=0.0023 Score=56.88 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.2
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
-.++|+|++|+|||||++.+.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 400
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.52 E-value=0.0028 Score=55.72 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998754
No 401
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0047 Score=53.28 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=19.8
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
-.++|+|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999985
No 402
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.48 E-value=0.0051 Score=57.09 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.9
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 403
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.47 E-value=0.0046 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.4
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999753
No 404
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.45 E-value=0.0056 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.3
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 405
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.44 E-value=0.0061 Score=58.68 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.8
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.+++|+||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998644
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.42 E-value=0.0063 Score=55.18 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998754
No 407
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.40 E-value=0.0075 Score=54.84 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 92 sl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+-..++..++.|+||.||||||..+.|+--+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 45567788999999999999999999997654
No 408
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.40 E-value=0.0061 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.7
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5889999999999999988864
No 409
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.40 E-value=0.0073 Score=56.02 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=22.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++.-+.|.||+|+|||||++.++....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 344488999999999999999998653
No 410
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.39 E-value=0.0065 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.3
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.|.||.|+|||||++.++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44578999999999999999998764
No 411
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.39 E-value=0.0049 Score=55.37 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.5
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 412
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.38 E-value=0.0041 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=9.2
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
No 413
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.37 E-value=0.0063 Score=53.38 Aligned_cols=22 Identities=18% Similarity=0.384 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
No 414
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.36 E-value=0.0068 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.0
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 415
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.36 E-value=0.0067 Score=60.35 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.-....++.|+|++||||||+.+.|+.-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3345789999999999999999998753
No 416
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.36 E-value=0.0041 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.3
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999764
No 417
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.34 E-value=0.0036 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
No 418
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.32 E-value=0.0073 Score=54.99 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.1
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+|.+++|.|+.||||||+++.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998765
No 419
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.32 E-value=0.0085 Score=54.74 Aligned_cols=31 Identities=35% Similarity=0.552 Sum_probs=27.2
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcc-cc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSR-SG 126 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~-~G 126 (382)
.+|.+++|.|++||||||+.+.|...+.. .|
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g 50 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYG 50 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccC
Confidence 46899999999999999999999987764 55
No 420
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.31 E-value=0.0082 Score=54.52 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.8
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSR 124 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~ 124 (382)
.+|.++.+-|+.||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987664
No 421
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.0069 Score=52.49 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 422
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.30 E-value=0.0063 Score=56.51 Aligned_cols=23 Identities=52% Similarity=0.609 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999743
No 423
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.30 E-value=0.0064 Score=56.74 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=21.2
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|..|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 424
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.28 E-value=0.0072 Score=58.32 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.6
Q ss_pred eeeeeecccCCCchhHHHHHHHhh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
..+.|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999764
No 425
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.27 E-value=0.0059 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.4
Q ss_pred eeeeecccCCCchhHHHHHHH
Q 016817 100 TILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~G 120 (382)
.++|+|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999985
No 426
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.26 E-value=0.0066 Score=56.17 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=20.7
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|++|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999743
No 427
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.26 E-value=0.0061 Score=53.26 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=19.5
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999988763
No 428
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.26 E-value=0.006 Score=53.97 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 429
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.26 E-value=0.006 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.=.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999853
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.25 E-value=0.0077 Score=53.68 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.1
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.++|+|++|+|||||++-+++-..
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999987654
No 431
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.25 E-value=0.0051 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.563 Sum_probs=20.6
Q ss_pred eeeeeeecccCCCchhHHHHHHHh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998763
No 432
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.24 E-value=0.0083 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+.|.||+|+|||||++.++....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999998765
No 433
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.23 E-value=0.004 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=4.7
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
=.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36889999999999999998865
No 434
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.15 E-value=0.014 Score=58.80 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=31.7
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEeecC
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~~i 135 (382)
++.+++++|++|+||||++..|+..+. ...+|.+-..|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467999999999999999999999888 555676655443
No 435
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.13 E-value=0.0073 Score=56.35 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=22.4
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-.++++|.+|+|||||+|.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998654
No 436
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.09 E-value=0.011 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.1
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
-+.|.||+|+|||||++.++....
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 377999999999999999998653
No 437
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.07 E-value=0.0042 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+.|.||+|+|||||++.+++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999999875
No 438
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.05 E-value=0.009 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999764
No 439
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.02 E-value=0.0061 Score=53.23 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=20.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998864
No 440
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.01 E-value=0.01 Score=56.92 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=21.9
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
..+++|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 441
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.00 E-value=0.0094 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.1
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
=.++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36889999999999999988853
No 442
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.0097 Score=53.13 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.1
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 443
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.92 E-value=0.01 Score=59.49 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.|.||+|+|||||+++|++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999775
No 444
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.92 E-value=0.016 Score=51.02 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=20.5
Q ss_pred ceeeeeeecccCCCchhHH-HHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLV-NLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl-~~i~Gl 121 (382)
+|.++.+.||.||||||++ +++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999997 555444
No 445
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.92 E-value=0.0094 Score=56.95 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=31.6
Q ss_pred CcccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 87 vL~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3777776789999999999999999999988886544
No 446
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.90 E-value=0.017 Score=48.33 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.-+.|.||+|+|||++.+.|.....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 34588999999999999999987654
No 447
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.87 E-value=0.006 Score=56.37 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.4
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999988654
No 448
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.86 E-value=0.012 Score=51.84 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=25.4
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHH
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~G 120 (382)
++..-+.+. |.-+.|.|+||+|||||...+..
T Consensus 7 lHas~v~v~-G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLVID-KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 555555554 77799999999999999887765
No 449
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.84 E-value=0.011 Score=52.61 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=19.9
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999998864
No 450
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.82 E-value=0.0094 Score=53.58 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998863
No 451
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.79 E-value=0.0072 Score=60.72 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.5
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999874
No 452
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.77 E-value=0.0039 Score=55.24 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998853
No 453
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.76 E-value=0.0092 Score=56.86 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHh
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-+++|+++.|.||+|+|||||+..++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988864
No 454
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.75 E-value=0.009 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=19.7
Q ss_pred ceeeeeeecccCCCchhHHHHHH
Q 016817 97 PVITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~ 119 (382)
+.=.++|+|+.|+|||||++.+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34468999999999999999885
No 455
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.70 E-value=0.021 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.6
Q ss_pred eeeeeeecccCCCchhHHHHHHHh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998853
No 456
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.68 E-value=0.023 Score=55.07 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=27.6
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
+.-+++|+|+.|+|||||++.|++.+. ..-+|.+-.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 345899999999999999999998876 333444433
No 457
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.62 E-value=0.014 Score=57.95 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.6
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999986543
No 458
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.51 E-value=0.017 Score=59.95 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=30.0
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccc---eeeeEee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG---LVLFAQT 133 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G---~I~i~G~ 133 (382)
..|-++.|.|++||||||+.+.|+..+...| .+.+++.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 4577899999999999999999998766434 3556653
No 459
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.49 E-value=0.017 Score=55.34 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=24.5
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566799999999999999999998765
No 460
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.46 E-value=0.016 Score=54.54 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.1
Q ss_pred eeeeeeecccCCCchhHHHHHHHhh
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+-.++++|.+|+|||||+|.|.|-.
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 4468999999999999999999864
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.44 E-value=0.025 Score=50.70 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.5
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999998765
No 462
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.44 E-value=0.018 Score=53.87 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=23.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++..+.|.||+|+|||||++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998775
No 463
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.43 E-value=0.0071 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.3
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
=.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3588999999999999988864
No 464
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.39 E-value=0.0046 Score=54.10 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.3
Q ss_pred eeeeeecccCCCchhHHHHHHH
Q 016817 99 ITILLMGFSGSGKSSLVNLMYS 120 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~G 120 (382)
=.++|+|++|+|||||++.+.+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999988764
No 465
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.38 E-value=0.018 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.8
Q ss_pred eeeecccCCCchhHHHHHHHhhc
Q 016817 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 101 ~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.|.||.|+|||||++.++..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999997654
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.33 E-value=0.02 Score=51.48 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++.|+||.||||+|..+.|+.-+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467999999999999999997654
No 467
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.29 E-value=0.012 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.8
Q ss_pred eeeeecccCCCchhHHHH-HHHhh
Q 016817 100 TILLMGFSGSGKSSLVNL-MYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~-i~Gl~ 122 (382)
.++|+|+.|+|||||++. +.|-.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 588999999999999998 66653
No 468
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.25 E-value=0.019 Score=60.16 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.2
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccc--eeeeEeec
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSG--LVLFAQTS 134 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G--~I~i~G~~ 134 (382)
+|.++.|+|.+||||||+.+.|+..+...| .+.++|..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 477899999999999999999998764223 44555543
No 469
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.10 E-value=0.022 Score=54.07 Aligned_cols=25 Identities=48% Similarity=0.647 Sum_probs=21.4
Q ss_pred ceeeeeeecccCCCchhHHHHHHHh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.+-.++|+|+.|+|||||++.+.+-
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998764
No 470
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.09 E-value=0.036 Score=53.01 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=27.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhcccceeeeEeecC
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G~I~i~G~~i 135 (382)
+..-+.|.||.|+|||||++.++.......-+.+++.++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 344588999999999999999998763222344555443
No 471
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.09 E-value=0.017 Score=56.45 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.2
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..++++|++|+|||||+|.|.|-..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~ 187 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEAT 187 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhcc
Confidence 45799999999999999999999854
No 472
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.07 E-value=0.015 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.3
Q ss_pred CCceeeeeeecccCCCchhHHHHHH
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMY 119 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~ 119 (382)
+++|+++.|.|++|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999976554
No 473
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.06 E-value=0.028 Score=53.96 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=28.9
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEee
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G~ 133 (382)
+|..+.|.||.|+|||||++.++.... ....+.+.+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 456789999999999999999998876 4444455443
No 474
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.06 E-value=0.028 Score=56.22 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=34.2
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc-ccc-eeeeE
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFA 131 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G-~I~i~ 131 (382)
|+.+.--+++|+++.|.|++|+|||||+.-++.-.. ..| .+.+.
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 555554588999999999999999999999988765 434 44443
No 475
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.05 E-value=0.027 Score=51.98 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.6
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhh
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+...+.|.||+|+|||||++.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344568899999999999999999764
No 476
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.00 E-value=0.019 Score=56.20 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.5
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
++..++++|.+|+|||||+|.|.|-..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~ 185 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFS 185 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhc
Confidence 356789999999999999999999753
No 477
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.91 E-value=0.024 Score=54.82 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=22.6
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.|.||+|+||||+.+.|+....
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 44688999999999999999998763
No 478
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.84 E-value=0.026 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.9
Q ss_pred eeeeeecccCCCchhHHHHHHHhhc
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.-+.|.||+|+|||||++.++....
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577999999999999999998763
No 479
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.79 E-value=0.025 Score=57.17 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.6
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.|-.++|+|+.|+|||||+|.+.|-.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34459999999999999999999864
No 480
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.75 E-value=0.037 Score=54.82 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=24.6
Q ss_pred cccCCCCCC-ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 88 IQKGGMDIP-PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 88 L~~isl~i~-~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+.++.+... ....+.|+|++||||||+++.+.--.
T Consensus 42 ~g~~~~~~~~~~~h~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 42 VAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp ETTEECCGGGGGGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred ECcEEcccccCcceEEEECCCCCCHHHHHHHHHHHH
Confidence 444444332 35578999999999999987665443
No 481
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.72 E-value=0.021 Score=56.55 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.6
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|.+|+|||||+|.|.|-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3789999999999999999875
No 482
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.69 E-value=0.033 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+.|.||.|+|||+|.+.|+...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999999876
No 483
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.65 E-value=0.016 Score=56.17 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=21.1
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.++|+|..|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 484
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.58 E-value=0.018 Score=57.48 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.3
Q ss_pred eeeeecccCCCchhHHHHHHHh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl 121 (382)
.++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 485
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=93.57 E-value=0.026 Score=58.28 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.2
Q ss_pred eeeeeecccCCCchhHHHHHHHh
Q 016817 99 ITILLMGFSGSGKSSLVNLMYSV 121 (382)
Q Consensus 99 e~~alvGpnGsGKSTLl~~i~Gl 121 (382)
-.++|+|..|+|||||+|.|.|-
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
No 486
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.52 E-value=0.03 Score=57.26 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=26.3
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcc-cc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSR-SG 126 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~-~G 126 (382)
+.|-++.|+|.+||||||+-+.|+..+.. .|
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g 424 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGG 424 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCS
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhc
Confidence 45678999999999999999999988763 44
No 487
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.52 E-value=0.029 Score=54.94 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=30.2
Q ss_pred CCCceeeeeeecccCCCchhHHHHHHHhhc-ccceeeeEe
Q 016817 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (382)
Q Consensus 94 ~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~-~~G~I~i~G 132 (382)
-+++|+++.|.||.|+|||||...++.-.. ..+.+.+-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 367899999999999999999987776554 445555443
No 488
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.49 E-value=0.031 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.6
Q ss_pred eeeeecccCCCchhHHHHHHHhh
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
.+||+||.||||||+.+.|+.-+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998654
No 489
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.46 E-value=0.056 Score=55.21 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=26.3
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhcccc-eeee
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG-LVLF 130 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~~~G-~I~i 130 (382)
.+..+++|+|++||||||+++.|+..+...| ++.+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVll 134 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCL 134 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 4567899999999999999999997766323 3444
No 490
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.33 E-value=0.038 Score=53.09 Aligned_cols=26 Identities=19% Similarity=0.574 Sum_probs=23.0
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.|.||.|+|||||++.++....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 44789999999999999999998764
No 491
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.32 E-value=0.037 Score=52.65 Aligned_cols=26 Identities=38% Similarity=0.360 Sum_probs=22.9
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+.-+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999997654
No 492
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.032 Score=55.80 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=27.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+..+.+..++| +.|.||.|+|||+|.++|++...
T Consensus 198 ~~~~g~~~prG--iLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 198 YEQIGIDPPRG--VLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp HHHHCCCCCCE--EEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 44455666777 78999999999999999998764
No 493
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.27 E-value=0.039 Score=49.91 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.4
Q ss_pred CCceeeeeeecccCCCchhHHHHHHHhh
Q 016817 95 IPPVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 95 i~~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+++...+.|.||.|+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6665568899999999999999999875
No 494
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.22 E-value=0.039 Score=53.45 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=22.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+...+.|.||+|+|||||++.|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 344588999999999999999998653
No 495
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.035 Score=55.71 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=27.9
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+....+..++| +.|.||.|+|||+|.++|++...
T Consensus 207 f~~~g~~~prG--vLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 207 FQRVGIKPPKG--VLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp HHHHCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCe--EEEECCCCCcHHHHHHHHHHHhC
Confidence 45555666777 77999999999999999999764
No 496
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.18 E-value=0.038 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=22.0
Q ss_pred eeeeecccCCCchhHHHHHHHhhc
Q 016817 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 100 ~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+.|.||+|+|||||++.|+....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 478999999999999999999876
No 497
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.17 E-value=0.04 Score=52.42 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.3
Q ss_pred eeeeeeecccCCCchhHHHHHHHhhc
Q 016817 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 98 Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
..-+.|.||.|+|||||++.++....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 34588999999999999999998754
No 498
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.17 E-value=0.034 Score=57.95 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.8
Q ss_pred ceeeeeeecccCCCchhHHHHHHHhh
Q 016817 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (382)
Q Consensus 97 ~Ge~~alvGpnGsGKSTLl~~i~Gl~ 122 (382)
+--+++|+|+.|+|||||+|.|.|-.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 44678999999999999999999853
No 499
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.15 E-value=0.058 Score=49.11 Aligned_cols=28 Identities=14% Similarity=-0.038 Sum_probs=21.8
Q ss_pred CceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 96 ~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
.+|.++.+.||.|+||||++.-++.-+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999999997765554444
No 500
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.037 Score=55.44 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=27.7
Q ss_pred cccCCCCCCceeeeeeecccCCCchhHHHHHHHhhc
Q 016817 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (382)
Q Consensus 88 L~~isl~i~~Ge~~alvGpnGsGKSTLl~~i~Gl~~ 123 (382)
+....+..++| +.|.||.|+|||+|.++|++...
T Consensus 207 f~~~g~~~prG--vLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 207 FKDMGIRAPKG--ALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp HHHHCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCe--eEEECcCCCCHHHHHHHHHHHhC
Confidence 45555666667 77999999999999999999764
Done!