BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>016818
MALVAILTHGQPLNSAKPTPKLSNLPPIKRTPNSCSFNNFSNTSREFLYEKITNFCTFQF
FKQPTFRIRSFNSEGDENYVPEDSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVG
VAATITLLSIGLKPPNLGTSFGVQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGW
IYFWLLMAAGSGLFVSEEALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVY
WGVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFVERFSLG
VRNPTAFLAGTMGIPPDCFFAGVCCGGLLTLPIQLVIGFLLRERPVFALATVATVVGIWT
VFPYAVAASTAIFLYLRHRYST

High Scoring Gene Products

Symbol, full name Information P value
AT4G13150 protein from Arabidopsis thaliana 9.0e-109

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  016818
        (382 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119315 - symbol:AT4G13150 "AT4G13150" species...  1075  9.0e-109  1


>TAIR|locus:2119315 [details] [associations]
            symbol:AT4G13150 "AT4G13150" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002687 IPI:IPI00518136 RefSeq:NP_193051.4
            UniGene:At.43323 PRIDE:F4JS93 EnsemblPlants:AT4G13150.1
            GeneID:826929 KEGG:ath:AT4G13150 Uniprot:F4JS93
        Length = 347

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 211/302 (69%), Positives = 248/302 (82%)

Query:    83 DSPDEQDQLANDEILKNKTVETSGFGSSFLAKLTIAVGVAATITLLSIGLKPPNLGTS-F 141
             D+  E+ + + DE  +N+ V  SG G  F+ KL + +G+A  IT++S+ LK    G S F
Sbjct:    53 DNDSEKSRDSKDED-ENERV--SGKGVPFIVKLGLGLGLAMIITVISVALKGSGGGGSPF 109

Query:   142 G-VQRLAEGSSSSLAMAAPSGFSFKVFGYKFILPEYAPGWIYFWLLMAAGSGLFVSEEAL 200
               V+ LA+ SSSS       GF+F  FG +F++P  APGW+YFWLLMAAG GLF+SEEAL
Sbjct:   110 EEVKSLAKVSSSS------EGFTFNAFGNRFMIPGNAPGWVYFWLLMAAGCGLFISEEAL 163

Query:   201 NIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKS 260
             NIWV I+LAR+LTLDGTWQSFAESFSRNAPYIVSTV WVYWGVC+SDMIPFY+GKLF +S
Sbjct:   164 NIWVGITLARMLTLDGTWQSFAESFSRNAPYIVSTVSWVYWGVCLSDMIPFYIGKLFRQS 223

Query:   261 GASDDVCSKLGISKEKALSITQSVQKYGNLIGFVERFSLGVRNPTAFLAGTMGIPPDCFF 320
             GASDDVCSKLGI KEKALSITQ+VQKYGNL GFVERFS+G+RNPTAF AG +GI P+CFF
Sbjct:   224 GASDDVCSKLGIGKEKALSITQAVQKYGNLSGFVERFSVGMRNPTAFFAGALGISPECFF 283

Query:   321 AGVCCGGLLTLPIQLVIGFLLRERPVFALATVATVVGIWTVFPYAVAASTAIFLYLRHRY 380
             AGVCCGGL+TLP+QLVIGFLLRERP+FALA VAT VGIWT+FPY VAASTA+FLY+R RY
Sbjct:   284 AGVCCGGLITLPLQLVIGFLLRERPMFALAAVATAVGIWTIFPYVVAASTALFLYIRSRY 343

Query:   381 ST 382
             ST
Sbjct:   344 ST 345


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      382       370   0.00086  117 3  11 22  0.49    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  236 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.69u 0.10s 31.79t   Elapsed:  00:00:01
  Total cpu time:  31.69u 0.10s 31.79t   Elapsed:  00:00:01
  Start:  Tue May 21 01:35:35 2013   End:  Tue May 21 01:35:36 2013

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