BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016818
         (382 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PCU|A Chain A, Human Carboxypeptidase A4 In Complex With A Cleaved
           Hexapeptide
          Length = 305

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 257 FTKSGASDDVCSKL-----GISKEKALSITQSVQKYGNLIGFVERFS 298
           F   GASD+ CS++       S+ +  S+   +QK+GN  GF++  S
Sbjct: 148 FAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHS 194


>pdb|2BO9|A Chain A, Human Carboxypeptidase A4 In Complex With Human Latexin.
 pdb|2BO9|C Chain C, Human Carboxypeptidase A4 In Complex With Human Latexin
          Length = 308

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 257 FTKSGASDDVCSKL-----GISKEKALSITQSVQKYGNLIGFVERFS 298
           F   GASD+ CS++       S+ +  S+   +QK+GN  GF++  S
Sbjct: 150 FAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHS 196


>pdb|4A94|A Chain A, Structure Of The Carboxypeptidase Inhibitor From Nerita
           Versicolor In Complex With Human Cpa4
 pdb|4A94|B Chain B, Structure Of The Carboxypeptidase Inhibitor From Nerita
           Versicolor In Complex With Human Cpa4
          Length = 310

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 257 FTKSGASDDVCSKL-----GISKEKALSITQSVQKYGNLIGFVERFS 298
           F   GASD+ CS++       S+ +  S+   +QK+GN  GF++  S
Sbjct: 152 FAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHS 198


>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
 pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
          Length = 404

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 257 FTKSGASDDVCSKL-----GISKEKALSITQSVQKYGNLIGFVERFS 298
           F   GASD+ CS++       S+ +  S+   +QK+GN  GF++  S
Sbjct: 246 FAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHS 292


>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase
           (Ttha0342) From Thermus Thermophilus Hb8
 pdb|2DOU|B Chain B, Probable N-Succinyldiaminopimelate Aminotransferase
           (Ttha0342) From Thermus Thermophilus Hb8
          Length = 376

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 273 SKEKALSITQSVQKYGNLIGFVERFSLGVRNPTAFLAGTMGIPPDCFFAGVCCGGL--LT 330
           +KE+ + +  S+ K  NL GF   F+LG     A L    G+     +AGV   G+  L 
Sbjct: 218 AKERVVELF-SLSKSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALK 276

Query: 331 LPIQLVIGF--LLRERPVFALATVATVVGIWTVFP 363
            P ++V G+  + RER   AL     + G+ ++ P
Sbjct: 277 TPKEVVRGYARVYRER---ALGMAEALKGVLSLLP 308


>pdb|2V57|A Chain A, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2V57|B Chain B, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2V57|C Chain C, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2V57|D Chain D, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2WGB|A Chain A, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis
 pdb|2WGB|B Chain B, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis
          Length = 190

 Score = 28.5 bits (62), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)

Query: 174 PEYAPGWIY--FWLLMAAG 190
           PEY PGW    FW LM AG
Sbjct: 141 PEYPPGWARRVFWALMQAG 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,739,097
Number of Sequences: 62578
Number of extensions: 419767
Number of successful extensions: 843
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 6
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)