BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016818
         (382 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A3CT23|KCY_METMJ Cytidylate kinase OS=Methanoculleus marisnigri (strain ATCC 35101 /
           DSM 1498 / JR1) GN=cmk PE=3 SV=1
          Length = 181

 Score = 37.7 bits (86), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 191 SGLFVSEEALNIWVSISLA----RLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCIS 246
           SG  V    L IW+S SL+    R+   DG  +  A +++ N     +T    Y+G+ I 
Sbjct: 84  SGRMVGNADLRIWLSASLSCRARRIAGRDGMDEEGARAYTENRQRSEATRYRNYYGIEID 143

Query: 247 DMIPF 251
           D+ P+
Sbjct: 144 DLSPY 148


>sp|Q6GZS5|051R_FRG3G Uncharacterized protein 051R OS=Frog virus 3 (isolate Goorha)
           GN=FV3-051R PE=4 SV=1
          Length = 561

 Score = 36.2 bits (82), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 12/103 (11%)

Query: 199 ALNIWVSISLARLLTLDGTWQSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGK-LF 257
           ALN+   ++LARLL L    +   +   R    + S  +   W VC S+ +  + GK LF
Sbjct: 454 ALNVISEMTLARLLDLPDIPEEVRQPTDREQAALGSDYVRSAWRVCYSEFVHKFEGKNLF 513

Query: 258 TKSGASDDVCSK-----LGISKEK--ALSITQSVQKYGNLIGF 293
               AS D C K     L +S++     + T S + YG LI  
Sbjct: 514 ----ASVDYCVKTHLKALKVSRDSVTGTAKTLSAKGYGTLIAL 552


>sp|Q04X52|GSA_LEPBL Glutamate-1-semialdehyde 2,1-aminomutase OS=Leptospira
           borgpetersenii serovar Hardjo-bovis (strain L550)
           GN=hemL PE=3 SV=1
          Length = 441

 Score = 33.5 bits (75), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 274 KEKALSITQSVQKYGNLIGFVERFSLGVRNPTAFLAGTMGIPPDCFFAGVCCGG 327
           KE  L I +  +KYG L+ F E  S G R     ++G +GI PD    G   GG
Sbjct: 231 KEFLLKIVEIAKKYGTLVVFDEVIS-GFRTGFQGMSGLLGIRPDLVTYGKIIGG 283


>sp|Q04NV4|GSA_LEPBJ Glutamate-1-semialdehyde 2,1-aminomutase OS=Leptospira
           borgpetersenii serovar Hardjo-bovis (strain JB197)
           GN=hemL PE=3 SV=1
          Length = 441

 Score = 33.5 bits (75), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 274 KEKALSITQSVQKYGNLIGFVERFSLGVRNPTAFLAGTMGIPPDCFFAGVCCGG 327
           KE  L I +  +KYG L+ F E  S G R     ++G +GI PD    G   GG
Sbjct: 231 KEFLLKIVEIAKKYGTLVVFDEVIS-GFRTGFQGMSGLLGIRPDLVTYGKIIGG 283


>sp|P45280|Y1629_HAEIN Uncharacterized membrane protein HI_1629 OS=Haemophilus influenzae
           (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1629
           PE=3 SV=1
          Length = 212

 Score = 33.1 bits (74), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 242 GVCISDMIPFYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLIGFVERFSLGV 301
           GV   D   ++LG+++           ++ ++ ++   + +   +YGN + FV RF  G+
Sbjct: 78  GVLAGDSCMYWLGRIYGTKILRFRPIRRI-VTLQRLRMVREKFSQYGNRVLFVARFLPGL 136

Query: 302 RNPTAFLAG-TMGIPPDCFFAGVCCGGLLTLPIQLVIG 338
           R P   ++G T  +    F     C  ++++PI + +G
Sbjct: 137 RAPIYMVSGITRRVSYVRFVLIDFCAAIISVPIWIYLG 174


>sp|Q7RTW8|OTOAN_HUMAN Otoancorin OS=Homo sapiens GN=OTOA PE=2 SV=1
          Length = 1153

 Score = 32.7 bits (73), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 219 QSFAESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKSGAS 263
           Q F  +F+  +PY V+ + W YW V    M PF L  L  +  AS
Sbjct: 603 QDFQNNFALLSPYQVNCLAWKYWEVSRLSMPPFLLAALPARYLAS 647


>sp|Q5THJ4|VP13D_HUMAN Vacuolar protein sorting-associated protein 13D OS=Homo sapiens
            GN=VPS13D PE=1 SV=1
          Length = 4387

 Score = 32.0 bits (71), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 12/94 (12%)

Query: 223  ESFSRNAPYIVSTVLWVYWGVCISDMIPFYLGKLFTKS----GASDDVCSKLGISKEKAL 278
            + F+R  PY     +       I+D++  +  +L +++    G+ D + + +G+  + + 
Sbjct: 4030 DPFTRVHPYETKEFI-------INDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSE 4082

Query: 279  SITQSVQKYGNLIGFVERFSLGVRNPTAFLAGTM 312
             +T  + KYGN+ G +   + GV N  A  AGT+
Sbjct: 4083 GVTGLI-KYGNVGGLIRNVTHGVSNSAAKFAGTL 4115


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,446,133
Number of Sequences: 539616
Number of extensions: 5759990
Number of successful extensions: 14818
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 14816
Number of HSP's gapped (non-prelim): 9
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)