Query 016818
Match_columns 382
No_of_seqs 54 out of 56
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 04:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iub_A CORA, divalent cation t 59.6 4.6 0.00016 38.6 2.6 53 325-380 309-361 (363)
2 4ev6_A Magnesium transport pro 49.1 4.6 0.00016 38.2 0.7 55 323-380 283-337 (339)
3 2ks1_B Epidermal growth factor 42.3 22 0.00074 25.6 3.2 15 367-381 26-40 (44)
4 2jwa_A Receptor tyrosine-prote 40.8 27 0.00091 25.3 3.5 15 367-381 26-40 (44)
5 2l2t_A Receptor tyrosine-prote 39.2 26 0.00087 25.3 3.2 15 367-381 25-39 (44)
6 3euo_A Type III pentaketide sy 34.0 14 0.00048 35.5 1.5 37 254-291 295-331 (379)
7 3e1h_A PKSIIINC, putative unch 27.8 20 0.00069 36.0 1.5 37 254-291 324-360 (465)
8 3oit_A OS07G0271500 protein; t 27.0 12 0.00041 36.2 -0.3 40 251-291 296-335 (387)
9 3ov2_A Curcumin synthase; type 24.5 14 0.0005 35.6 -0.3 40 251-291 299-338 (393)
10 1i88_A CHS2, chalcone synthase 23.2 18 0.00062 34.5 0.1 40 251-291 299-338 (389)
11 3awk_A Chalcone synthase-like 22.9 15 0.00053 35.3 -0.4 40 251-291 312-351 (402)
12 2p0u_A Stilbenecarboxylate syn 21.8 21 0.00071 34.6 0.3 40 251-291 317-356 (413)
13 1x7f_A Outer surface protein; 21.0 44 0.0015 33.4 2.4 51 267-320 176-229 (385)
14 3a5r_A Benzalacetone synthase; 20.9 21 0.00073 33.9 0.1 40 251-291 295-334 (387)
No 1
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=59.57 E-value=4.6 Score=38.63 Aligned_cols=53 Identities=9% Similarity=0.212 Sum_probs=22.8
Q ss_pred hhhhhhHHHHHHHHHHhcCcHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Q 016818 325 CGGLLTLPIQLVIGFLLRERPVFALATVATVVGIWTVFPYAVAASTAIFLYLRHRY 380 (382)
Q Consensus 325 ~gaLiW~~lff~LG~~LGe~~~~i~~~v~~~vGi~~l~i~avai~~av~~~~kkr~ 380 (382)
.++++ +|.=+..| ++|.|+..+=++-.. +|+|.++.+.++++++.+++.|||+
T Consensus 309 it~If-lP~T~IaG-iyGMNf~~mPel~~~-~Gy~~~l~~m~~i~~~~~~~Fkrk~ 361 (363)
T 2iub_A 309 IATIF-MPLTFIAG-IYGMNFEYMPELRWK-WGYPVVLAVMGVIAVIMVVYFKKKK 361 (363)
T ss_dssp HHHHH-HHHHHHTT-SCC---------------CHHHHHHHHHHHHHHHTTTTSCC
T ss_pred HHHHH-HHHHHHHh-hhcccCCCCCcccCc-HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333 33333334 578888766666666 4998877765556666676666664
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=49.14 E-value=4.6 Score=38.22 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=31.2
Q ss_pred hchhhhhhHHHHHHHHHHhcCcHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Q 016818 323 VCCGGLLTLPIQLVIGFLLRERPVFALATVATVVGIWTVFPYAVAASTAIFLYLRHRY 380 (382)
Q Consensus 323 ~~~gaLiW~~lff~LG~~LGe~~~~i~~~v~~~vGi~~l~i~avai~~av~~~~kkr~ 380 (382)
...++++--|++ ..| ++|.|+..+=..-.. +|+|.++.+.++++++.+++.|||+
T Consensus 283 Tiit~IflP~T~-IaG-iyGMNf~~mPel~~~-~gy~~~l~~m~~~~~~~~~~fkrk~ 337 (339)
T 4ev6_A 283 TMVTTIFAVPMW-ITG-IYGMNFSYLPLANNP-QGFWLVMALMVVIIMIFVYIFRRSG 337 (339)
T ss_dssp HHHHHHSSHHHH-HHH-HTTCCCSCCTTSSCT-THHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH-HHh-hccCcCCCCCCccCc-hHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444 345 568887655444556 4888777765555555555555554
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=42.31 E-value=22 Score=25.59 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhccc
Q 016818 367 AASTAIFLYLRHRYS 381 (382)
Q Consensus 367 ai~~av~~~~kkr~~ 381 (382)
++++++|+|+|||+.
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 444567777777764
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=40.80 E-value=27 Score=25.29 Aligned_cols=15 Identities=7% Similarity=0.164 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhhccc
Q 016818 367 AASTAIFLYLRHRYS 381 (382)
Q Consensus 367 ai~~av~~~~kkr~~ 381 (382)
++++.+++|+|||+.
T Consensus 26 i~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 26 VLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHhheehhhh
Confidence 444455556666654
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.24 E-value=26 Score=25.32 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhccc
Q 016818 367 AASTAIFLYLRHRYS 381 (382)
Q Consensus 367 ai~~av~~~~kkr~~ 381 (382)
++++.+|+|+|||+.
T Consensus 25 ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhhhhh
Confidence 344566777777754
No 6
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase, transferase; 1.75A {Neurospora crassa} PDB: 3eut_A* 3euq_A*
Probab=34.05 E-value=14 Score=35.51 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=31.9
Q ss_pred hhhccccCchhhhhhhcCCChHHHHHHHHHHHhhcCeE
Q 016818 254 GKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (382)
Q Consensus 254 GR~lG~~~ll~r~~~Ki~it~eki~kie~~~qKYGn~~ 291 (382)
=..-++ ..++.+.+++++.+|++...-+.+++|||..
T Consensus 295 ~Hq~n~-~il~~v~~~Lgl~~ek~~~s~~~l~~~GNts 331 (379)
T 3euo_A 295 MHPGGA-TILSGAESAMGLTPEHMRASYDRYINHGNSS 331 (379)
T ss_dssp ECCSSH-HHHHHHHHHHTCCGGGGHHHHHHHHHHCBCG
T ss_pred eCCCCh-HHHHHHHHHhCCCHHHHHHHHHHHHhcCccH
Confidence 455566 8899999999999999998888999999963
No 7
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa}
Probab=27.83 E-value=20 Score=35.96 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=32.0
Q ss_pred hhhccccCchhhhhhhcCCChHHHHHHHHHHHhhcCeE
Q 016818 254 GKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (382)
Q Consensus 254 GR~lG~~~ll~r~~~Ki~it~eki~kie~~~qKYGn~~ 291 (382)
-..-++ ..++.+.+++++.+|++...-+.+++|||..
T Consensus 324 ~Hqan~-rIl~~v~~~Lgl~~ek~~~s~~~l~~yGNts 360 (465)
T 3e1h_A 324 MHPGGA-TILSGAESAMGLTPEHMRASYDRYINHGNSS 360 (465)
T ss_dssp ECCSSH-HHHHHHHHHHTCCGGGGHHHHHHHHHHCBCG
T ss_pred ecCCCh-HHHHHHHHHhCcCHHHhHHHHHHHhcceech
Confidence 455666 8899999999999999988889999999964
No 8
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A
Probab=26.99 E-value=12 Score=36.16 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=35.4
Q ss_pred hhhhhhccccCchhhhhhhcCCChHHHHHHHHHHHhhcCeE
Q 016818 251 FYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (382)
Q Consensus 251 Y~LGR~lG~~~ll~r~~~Ki~it~eki~kie~~~qKYGn~~ 291 (382)
+|+-..-+. ..++.+.+++++.+|++...-+.+++|||..
T Consensus 296 ~~v~Hq~n~-~il~~v~~~Lgl~~ek~~~s~~~l~~~GNts 335 (387)
T 3oit_A 296 FWAVHPGSS-TIMDQVDAALGLEPGKLAASRRVLSDYGNMS 335 (387)
T ss_dssp EEEECCCCH-HHHHHHHHHHTCCTTTTHHHHHHHHHHCBCG
T ss_pred EEEECCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCchH
Confidence 778888888 8999999999999998888778899999963
No 9
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A
Probab=24.54 E-value=14 Score=35.63 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=35.1
Q ss_pred hhhhhhccccCchhhhhhhcCCChHHHHHHHHHHHhhcCeE
Q 016818 251 FYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (382)
Q Consensus 251 Y~LGR~lG~~~ll~r~~~Ki~it~eki~kie~~~qKYGn~~ 291 (382)
+|+-...+. ..++.+.+++++.+|++...-+.+++|||..
T Consensus 299 ~~v~Hq~n~-~i~~~v~~~Lgl~~ek~~~s~~~l~~~GNts 338 (393)
T 3ov2_A 299 FWVAHPGNW-AIIDAIEAKLQLSPDKLSTARHVFTEYGNMQ 338 (393)
T ss_dssp EEEECCCCH-HHHHHHHHHHTCCTTTTHHHHHHHHHHCBCG
T ss_pred EEEECCCCh-HHHHHHHHHcCCCHHHHHHHHHHHHHhCChH
Confidence 778888888 8999999999999988887778899999963
No 10
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A {Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A 1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A* 1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A* 1z1e_A* 1z1f_A*
Probab=23.18 E-value=18 Score=34.49 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=33.1
Q ss_pred hhhhhhccccCchhhhhhhcCCChHHHHHHHHHHHhhcCeE
Q 016818 251 FYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (382)
Q Consensus 251 Y~LGR~lG~~~ll~r~~~Ki~it~eki~kie~~~qKYGn~~ 291 (382)
+++-...+. ..++.+.+++++.+|++....+.+++|||..
T Consensus 299 ~~v~Hq~~~-~i~~~~~~~lgl~~ek~~~~~~~l~~~GNts 338 (389)
T 1i88_A 299 FWIAHPGGP-AILDQVEQKLALKPEKMNATREVLSEYGNMS 338 (389)
T ss_dssp EEEECCSCH-HHHHHHHHHHTCCGGGGHHHHHHHHHHCBCG
T ss_pred eEEECCCcH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCCch
Confidence 477777777 7889999999999998877667899999953
No 11
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide synthase, transferase; 2.00A {Huperzia serrata} PDB: 3awj_A
Probab=22.92 E-value=15 Score=35.35 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=33.3
Q ss_pred hhhhhhccccCchhhhhhhcCCChHHHHHHHHHHHhhcCeE
Q 016818 251 FYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (382)
Q Consensus 251 Y~LGR~lG~~~ll~r~~~Ki~it~eki~kie~~~qKYGn~~ 291 (382)
+++-...+. ..++.+.+++++.+|++....+.+++|||..
T Consensus 312 ~~v~Hq~~~-~i~~~~~~~lgl~~ek~~~s~~~l~~~GNts 351 (402)
T 3awk_A 312 FWAVHPGGP-AILDQIEAKLGLSTDKMQASRDVLASYGNMS 351 (402)
T ss_dssp EEEECCSCH-HHHHHHHHHTTCCTTTTHHHHHHHHHHCBCG
T ss_pred eEEECCCcH-HHHHHHHHHcCCCHHHHHHHHHHHHHcCCch
Confidence 477777777 7889999999999998877767899999953
No 12
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type transferase; 1.90A {Marchantia polymorpha}
Probab=21.84 E-value=21 Score=34.62 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=33.1
Q ss_pred hhhhhhccccCchhhhhhhcCCChHHHHHHHHHHHhhcCeE
Q 016818 251 FYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (382)
Q Consensus 251 Y~LGR~lG~~~ll~r~~~Ki~it~eki~kie~~~qKYGn~~ 291 (382)
+++-...+. ..++.+.+++++.+|++...-+.+++|||..
T Consensus 317 ~~v~Hq~~~-~i~~~~~~~Lgl~~ek~~~s~~~l~~~GNts 356 (413)
T 2p0u_A 317 FWAVHPGGP-AILDQVEAKLELEKGKFQASRDILSDYGNMS 356 (413)
T ss_dssp EEEECCSSH-HHHHHHHHHTTCCGGGGHHHHHHHHHHCBCG
T ss_pred EEEECCCCH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCcch
Confidence 466777777 7889999999999998877767899999953
No 13
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=21.01 E-value=44 Score=33.37 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=41.3
Q ss_pred hhhcCCChHHHHHHHHHHHhhcCeEEEEeecccc---cccchhhhcccCCCCccchh
Q 016818 267 CSKLGISKEKALSITQSVQKYGNLIGFVERFSLG---VRNPTAFLAGTMGIPPDCFF 320 (382)
Q Consensus 267 ~~Ki~it~eki~kie~~~qKYGn~~i~IgRF~PG---VRn~~~ylAGmsgmpf~rFa 320 (382)
.+..|++.+.+.+-+++|++||-. ++-|+|| .|-|-|+..|+-=+---|..
T Consensus 176 r~~TGLs~~~f~~~n~~~k~~Gi~---t~AFI~g~~~~rGPwpl~eGLPTLE~HR~~ 229 (385)
T 1x7f_A 176 QKFTGLPYDYFIRCSERFKKHGIR---SAAFITSHVANIGPWDINDGLCTLEEHRNL 229 (385)
T ss_dssp STTCSBCHHHHHHHHHHHHHTTCC---CEEEECCSSCCBCSSSCCSCCBSBGGGTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCc---EEEEecCCccccCCccccCCCCchHHHCCC
Confidence 477899999999999999999954 4578888 88888888887665555554
No 14
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Probab=20.85 E-value=21 Score=33.94 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=32.3
Q ss_pred hhhhhhccccCchhhhhhhcCCChHHHHHHHHHHHhhcCeE
Q 016818 251 FYLGKLFTKSGASDDVCSKLGISKEKALSITQSVQKYGNLI 291 (382)
Q Consensus 251 Y~LGR~lG~~~ll~r~~~Ki~it~eki~kie~~~qKYGn~~ 291 (382)
+++-...+. .+++.+.+++++.+|++....+.+++|||..
T Consensus 295 ~~v~Hq~~~-~i~~~~~~~lgl~~ek~~~s~~~l~~~GNts 334 (387)
T 3a5r_A 295 FWIAHPGGP-AILDQVTAKVGLEKEKLKVTRQVLKDYGNMS 334 (387)
T ss_dssp EEEECCSCH-HHHHHHHHHHTCCGGGGHHHHHHHHHHCBCG
T ss_pred eEEECCCCH-HHHHHHHHHcCCChHHhHHHHHHHHhcCCcc
Confidence 466666676 7888999999999988876667789999953
Done!