BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016820
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VDC|A Chain A, Structure Of Nadph Dependent Thioredoxin Reductase
Length = 333
Score = 513 bits (1320), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/333 (74%), Positives = 279/333 (83%), Gaps = 4/333 (1%)
Query: 51 MDEIQTLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENF 110
M+ ++T T++CI+GSGP ELKP+LFEGWMANDIAPGGQLTTT+DVENF
Sbjct: 1 MNGLETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENF 60
Query: 111 PGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVAT 170
PGFP+GILG +L D+ R QS RFGT IFTETV+KVDF S+PFK+FTDSK++LAD VI+A
Sbjct: 61 PGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAI 120
Query: 171 GAVAKKLQFPGSD----AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTK 226
GAVAK+L F GS FWNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEEANFLTK
Sbjct: 121 GAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTK 180
Query: 227 YGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXT 286
YGSKVYIIHRRD+FRASKIMQ RAL+NPKIDVIWNS V+EAYG+ T
Sbjct: 181 YGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVT 240
Query: 287 GQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK 346
G VSDLKVSGLFFAIGHEPATKF+DG ++L SDGY++TKPGTT TSVPGVFAAGDVQDKK
Sbjct: 241 GDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKK 300
Query: 347 YRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
YRQA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct: 301 YRQAITAAGTGCMAALDAEHYLQEIGSQEGKSD 333
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust.
Identities = 234/323 (72%), Positives = 274/323 (84%)
Query: 57 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG 116
L+T+VCIIGSGP ELKP+LFEGWMANDIA GGQLTTT+DVENFPGFP G
Sbjct: 29 LRTRVCIIGSGPAAHTAAIYAARAELKPVLFEGWMANDIAAGGQLTTTTDVENFPGFPTG 88
Query: 117 ILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK 176
I+G DLMD CR QS+RFGT I +ETV++VDF +RPF+V +DS +VLADTV+VATGAVA++
Sbjct: 89 IMGIDLMDNCRAQSVRFGTNILSETVTEVDFSARPFRVTSDSTTVLADTVVVATGAVARR 148
Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
L F GSD +WNRGISACAVCDGAAPIFR+KP+AVIGGGDSAMEE NFLTKYGS+VYIIHR
Sbjct: 149 LYFSGSDTYWNRGISACAVCDGAAPIFRNKPIAVIGGGDSAMEEGNFLTKYGSQVYIIHR 208
Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
R++FRASKIMQ RAL+NPKI V+W+S V+EAYG TG+VSDL+VSG
Sbjct: 209 RNTFRASKIMQARALSNPKIQVVWDSEVVEAYGGAGGGPLAGVKVKNLVTGEVSDLQVSG 268
Query: 297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT 356
LFFAIGHEPATKF++GQL+LH+DGY+ TKPG+THTSV GVFAAGDVQDKKYRQA+TAAG+
Sbjct: 269 LFFAIGHEPATKFLNGQLELHADGYVATKPGSTHTSVEGVFAAGDVQDKKYRQAITAAGS 328
Query: 357 GCMAALEAEHYLQEIGSQEDKSE 379
GCMAAL+AEHYLQE+G+Q KS+
Sbjct: 329 GCMAALDAEHYLQEVGAQVGKSD 351
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/316 (59%), Positives = 230/316 (72%), Gaps = 6/316 (1%)
Query: 60 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
KV IIGSGP E+KPIL+EG MAN IA GGQLTTT+++ENFPGFP G+ G
Sbjct: 12 KVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTG 71
Query: 120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAK 175
+LMDR R QS +FGT+I TETVSKVD S+PFK++T D++ V D +I+ATGA AK
Sbjct: 72 SELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK 131
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
++ PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKV+++
Sbjct: 132 RMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLV 191
Query: 236 RRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVS 295
R+D RAS IMQ RA N KI++++N+V LEA G+ + +DL VS
Sbjct: 192 RKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKK--NEETDLPVS 249
Query: 296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
GLF+AIGH PATK V GQ+D GYI T PG++ TSVPG FAAGDVQD KYRQA+T+AG
Sbjct: 250 GLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAG 309
Query: 356 TGCMAALEAEHYLQEI 371
+GCMAAL+AE YL +
Sbjct: 310 SGCMAALDAEKYLTSL 325
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/319 (58%), Positives = 231/319 (72%), Gaps = 6/319 (1%)
Query: 57 LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG 116
+ KV IIGSGP E+KPIL+EG MAN IA GGQLTTT+++ENFPGFP G
Sbjct: 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDG 80
Query: 117 ILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGA 172
+ G +LMDR R QS +FGT+I TETVSKVD S+PFK++T D++ V D +I+ATGA
Sbjct: 81 LTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA 140
Query: 173 VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVY 232
AK++ PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKV+
Sbjct: 141 SAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVF 200
Query: 233 IIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
++ R+D RAS IMQ RA N KI++++N+V LEA G+ + +DL
Sbjct: 201 MLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKK--NEETDL 258
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT 352
VSGLF+AIGH PATK V GQ+D GYI T PG++ TSVPG FAAGDVQD KYRQA+T
Sbjct: 259 PVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAIT 318
Query: 353 AAGTGCMAALEAEHYLQEI 371
+AG+GCMAAL+AE YL +
Sbjct: 319 SAGSGCMAALDAEKYLTSL 337
>pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A5L|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A65|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
pdb|4A65|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
Length = 314
Score = 343 bits (881), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 215/310 (69%), Gaps = 5/310 (1%)
Query: 61 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
V IIGSGP LKP+++EG+MA +A GGQLTTT+ +ENFPGFP GI G
Sbjct: 7 VVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGN 66
Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQF 179
+LM R QS ++GT I TET+ VDF ++PFK+FT+ K VL +VI+ATGA AK++
Sbjct: 67 ELMMNMRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHV 126
Query: 180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239
PG D +W G+SACA+CDGA PIFR+K L V+GGGD+AMEEA LTKYGSKV I+HRRD+
Sbjct: 127 PGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA 186
Query: 240 FRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFF 299
FRASK MQ R L +PKI+VIWNS ++E G+ +G+ + V+GLF+
Sbjct: 187 FRASKTMQERVLNHPKIEVIWNSELVELEGD--GDLLNGAKIHNLVSGEYKVVPVAGLFY 244
Query: 300 AIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCM 359
AIGH P +KF+ GQ+ DGYI+T+ TSV GVFA GDV D+ YRQA+ AAG+GCM
Sbjct: 245 AIGHSPNSKFLGGQVKTADDGYILTE--GPKTSVDGVFACGDVCDRVYRQAIVAAGSGCM 302
Query: 360 AALEAEHYLQ 369
AAL E +LQ
Sbjct: 303 AALSCEKWLQ 312
>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
pdb|2A87|B Chain B, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
Length = 335
Score = 271 bits (692), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 189/312 (60%), Gaps = 13/312 (4%)
Query: 61 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
V +IGSGP +L P++FEG + GG L TT+DVEN+PGF GI G
Sbjct: 17 VIVIGSGPAGYTAALYAARAQLAPLVFEG-----TSFGGALMTTTDVENYPGFRNGITGP 71
Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFK--VFTDSKSVLADTVIVATGAVAKKLQ 178
+LMD R Q+LRFG + E V V P K V D ++ A VI+A GA A+ LQ
Sbjct: 72 ELMDEMREQALRFGADLRMEDVESVSLHG-PLKSVVTADGQTHRARAVILAMGAAARYLQ 130
Query: 179 FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
PG RG+S+CA CDG FRD+ +AVIGGGDSAMEEA FLT++ V ++HRRD
Sbjct: 131 VPGEQELLGRGVSSCATCDGF--FFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRD 188
Query: 239 SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLF 298
FRASKIM +RA N KI + N V+ G+ TG + L V+G+F
Sbjct: 189 EFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTN---TGAETTLPVTGVF 245
Query: 299 FAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGC 358
AIGHEP + V +D+ DGY++ + TT TS+PGVFAAGD+ D+ YRQAVTAAG+GC
Sbjct: 246 VAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGC 305
Query: 359 MAALEAEHYLQE 370
AA++AE +L E
Sbjct: 306 AAAIDAERWLAE 317
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 253 bits (647), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 193/320 (60%), Gaps = 16/320 (5%)
Query: 56 TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
T +K+ I+GSGP L+P+L G + GGQLTTT++VEN+PG P
Sbjct: 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57
Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
+ G LM+R + +F T+I + ++KVD ++RPF++ D+ D +I+ATGA A+
Sbjct: 58 DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
L P +AF RG+SACA CDG +R++ +AVIGGG++A+EEA +L+ S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Query: 236 RRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
RRD FRA KI+ R + N I + N + E G+ + + L
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESL 234
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYR 348
V+GLF AIGH P T +GQL+L +GYI + G T TS+PGVFAAGDV D YR
Sbjct: 235 DVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 293
Query: 349 QAVTAAGTGCMAALEAEHYL 368
QA+T+AGTGCMAAL+AE YL
Sbjct: 294 QAITSAGTGCMAALDAERYL 313
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 193/320 (60%), Gaps = 16/320 (5%)
Query: 56 TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
T +K+ I+GSGP L+P+L G + GGQLTTT++VEN+PG P
Sbjct: 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57
Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
+ G LM+R + +F T+I + ++KVD ++RPF++ D+ D +I+ATGA A+
Sbjct: 58 DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
L P +AF RG+SACA CDG +R++ +AVIGGG++A+EEA +L+ S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Query: 236 RRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
RRD FRA KI+ R + N I + N + E G+ + + L
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESL 234
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYR 348
V+GLF AIGH P T +GQL+L +GYI + G T TS+PGVFAAGDV D YR
Sbjct: 235 DVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 293
Query: 349 QAVTAAGTGCMAALEAEHYL 368
QA+T+AGTGCMAAL+AE YL
Sbjct: 294 QAITSAGTGCMAALDAERYL 313
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/320 (42%), Positives = 192/320 (60%), Gaps = 16/320 (5%)
Query: 56 TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
T +K+ I+GSGP L+P+L G + GGQLTTT++VEN+PG P
Sbjct: 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57
Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
+ G LM+R + +F T+I + ++KVD ++RPF++ D+ D +I+ATGA A+
Sbjct: 58 DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
L P +AF RG+SACA DG +R++ +AVIGGG++A+EEA +L+ S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Query: 236 RRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
RRD FRA KI+ R + N I + N + E G+ + + L
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESL 234
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYR 348
V+GLF AIGH P T +GQL+L +GYI + G T TS+PGVFAAGDV D YR
Sbjct: 235 DVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 293
Query: 349 QAVTAAGTGCMAALEAEHYL 368
QA+T+AGTGCMAAL+AE YL
Sbjct: 294 QAITSAGTGCMAALDAERYL 313
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/320 (42%), Positives = 192/320 (60%), Gaps = 16/320 (5%)
Query: 56 TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
T +K+ I+GSGP L+P+L G + GGQLTTT++VEN+PG P
Sbjct: 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57
Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
+ G LM+R + +F T+I + ++KVD ++RPF++ D+ D +I+ATGA A+
Sbjct: 58 DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
L P +AF RG+SA A CDG +R++ +AVIGGG++A+EEA +L+ S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSASATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Query: 236 RRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
RRD FRA KI+ R + N I + N + E G+ + + L
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESL 234
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYR 348
V+GLF AIGH P T +GQL+L +GYI + G T TS+PGVFAAGDV D YR
Sbjct: 235 DVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 293
Query: 349 QAVTAAGTGCMAALEAEHYL 368
QA+T+AGTGCMAAL+AE YL
Sbjct: 294 QAITSAGTGCMAALDAERYL 313
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/320 (42%), Positives = 192/320 (60%), Gaps = 16/320 (5%)
Query: 56 TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
T +K+ I+GSGP L+P+L G + GGQLTTT++VEN+PG P
Sbjct: 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57
Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
+ G LM+R + +F T+I + ++KVD ++RPF++ D+ D +I+ATGA A+
Sbjct: 58 DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
L P +AF RG+SACA DG +R++ +AVIGGG++A+EEA +L+ S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Query: 236 RRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
RRD FRA KI+ R + N I + N + E G+ + + L
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESL 234
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYR 348
V+GLF AIGH P T +GQL+L +GYI + G T TS+PGVFAAGDV D YR
Sbjct: 235 DVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 293
Query: 349 QAVTAAGTGCMAALEAEHYL 368
QA+T+AGTGCMAAL+AE YL
Sbjct: 294 QAITSAGTGCMAALDAERYL 313
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 170/312 (54%), Gaps = 15/312 (4%)
Query: 61 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
V IIG GP +L ++ E M PGGQ+ + +VENFPGFP+ I G
Sbjct: 11 VVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-----PGGQIAWSEEVENFPGFPEPIAGM 65
Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSR----PFKVFTDSKSVLADTVIVATGAVAKK 176
+L R Q+ +FG ++ + V V + PF V + A VI+ATGA +K
Sbjct: 66 ELAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK 125
Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
L PG D FW +G+S CA CDG ++ K + VIGGGD+A+EE FLTK+ +V +IHR
Sbjct: 126 LGIPGEDNFWGKGVSTCATCDGF--FYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHR 183
Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
RD+ RA+K+ Q RA NPK+ IW++ V E G TG+VS+L G
Sbjct: 184 RDTLRANKVAQARAFANPKMKFIWDTAVEEIQG---ADSVSGVKLRNLKTGEVSELATDG 240
Query: 297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT 356
+F IGH P T FV + L DGY+ + +T++P +FAAGDV D YRQ T+ G
Sbjct: 241 VFIFIGHVPNTAFVKDTVSLRDDGYVDVRD-EIYTNIPMLFAAGDVSDYIYRQLATSVGA 299
Query: 357 GCMAALEAEHYL 368
G AA+ E L
Sbjct: 300 GTRAAMMTERQL 311
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/280 (43%), Positives = 158/280 (56%), Gaps = 10/280 (3%)
Query: 97 PGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT 156
PGGQ T +VENFPGF + I G DL + + +FG + V+ K +
Sbjct: 40 PGGQXANTEEVENFPGF-EXITGPDLSTKXFEHAKKFGAVYQYGDIKSVEDKGEYKVINF 98
Query: 157 DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS 216
+K + A VI+ATGA KK+ PG RG+S CAVCDGA F++K L VIGGGDS
Sbjct: 99 GNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDS 156
Query: 217 AMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXX 276
A+EE FLTK+ KV I+HRRD RA +I+Q+RA N KID IW S L++ E
Sbjct: 157 AVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIW-SHTLKSINE-KDGKV 214
Query: 277 XXXXXXXXXTGQVSDLKVSGLFFAIGHEPATK-FVDGQLDLHSD-GYIITKPGTTHTSVP 334
G + G+F IG +P T F D L + +D GYI+TK T TSVP
Sbjct: 215 GSVTLTSTKDGSEETHEADGVFIYIGXKPLTAPFKD--LGITNDVGYIVTKDDXT-TSVP 271
Query: 335 GVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQ 374
G+FAAGDV+DK RQ VTA G G +AA A Y++ + Q
Sbjct: 272 GIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQ 311
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 160/317 (50%), Gaps = 17/317 (5%)
Query: 58 KTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI 117
K V I+G GP LK ++ PGGQLT V+++ G + I
Sbjct: 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGE------TPGGQLTEAGIVDDYLGLIE-I 67
Query: 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKK 176
D++ ++ + + V K++ + F V T K AD+VI+ G +K
Sbjct: 68 QASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRK 127
Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
L PG F RGIS C+VCD AP+F+++ +AVIGGGDSA+E A L+ Y +KVY+IHR
Sbjct: 128 LGVPGEQEFAGRGISYCSVCD--APLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHR 185
Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
RD+F+A I P ++ + NSVV E G+ TG++ +L V+G
Sbjct: 186 RDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGD---KVVKQVVVENLKTGEIKELNVNG 242
Query: 297 LFFAIGHEPATKFVDGQ-LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--KYRQAVTA 353
+F IG +P T F ++ ++GYI TSVPGVFAAGD +RQ +TA
Sbjct: 243 VFIEIGFDPPTDFAKSNGIETDTNGYIKVDE-WMRTSVPGVFAAGDCTSAWLGFRQVITA 301
Query: 354 AGTGCMAALEAEHYLQE 370
G +AA A Y+ E
Sbjct: 302 VAQGAVAATSAYRYVTE 318
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 159/317 (50%), Gaps = 17/317 (5%)
Query: 58 KTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI 117
K V I+G GP LK ++ PGGQLT V+++ G + I
Sbjct: 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVI------GETPGGQLTEAGIVDDYLGLIE-I 67
Query: 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKK 176
D++ ++ + + V K++ + F V T K AD+VI+ G +K
Sbjct: 68 QASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRK 127
Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
L PG F RGIS C+V D AP+F+++ +AVIGGGDSA+E A L+ Y +KVY+IHR
Sbjct: 128 LGVPGEQEFAGRGISYCSVAD--APLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHR 185
Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
RD+F+A I P ++ + NSVV E G+ TG++ +L V+G
Sbjct: 186 RDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGD---KVVKQVVVENLKTGEIKELNVNG 242
Query: 297 LFFAIGHEPATKFVDGQ-LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--KYRQAVTA 353
+F IG +P T F ++ ++GYI TSVPGVFAAGD +RQ +TA
Sbjct: 243 VFIEIGFDPPTDFAKSNGIETDTNGYIKVDE-WMRTSVPGVFAAGDCTSAWLGFRQVITA 301
Query: 354 AGTGCMAALEAEHYLQE 370
G +AA A Y+ E
Sbjct: 302 VAQGAVAATSAYRYVTE 318
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 155/314 (49%), Gaps = 15/314 (4%)
Query: 63 IIGSGPXXXXXXXXXXXXELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGD 121
IIG GP +K +LFE M PGGQ+T +S++EN+PG + + G D
Sbjct: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGM-----PGGQITGSSEIENYPGVKEVVSGLD 60
Query: 122 LMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFP 180
M + Q RFG + V +V K F + D K+ A +VI+ATG K+
Sbjct: 61 FMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIK 120
Query: 181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
G +W +G+S CA CDG +++K +AV+GGGD+A+EEA +L KVY+IHRRD F
Sbjct: 121 GESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF 178
Query: 241 RASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFA 300
R + I A N KI+ + VV E G+ T + +L V G F
Sbjct: 179 RCAPITLEHAKNNDKIEFLTPYVVEEIKGD--ASGVSSLSIKNTATNEKRELVVPGFFIF 236
Query: 301 IGHE---PATKFVDGQLDLHSDGY-IITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT 356
+G++ K D + D Y I + T+V G+FAAGD++ +Q V AA
Sbjct: 237 VGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASD 296
Query: 357 GCMAALEAEHYLQE 370
G AAL YL+
Sbjct: 297 GATAALSVISYLEH 310
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 164/323 (50%), Gaps = 27/323 (8%)
Query: 61 VCIIGSGPXXXXXXXXXXXXELKPIL-FEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
V IIG GP LK ++ FE PGGQ+T++S++EN+PG Q G
Sbjct: 7 VAIIGGGPAGLSAGLYATRGGLKNVVXFEKGX-----PGGQITSSSEIENYPGVAQVXDG 61
Query: 120 GDLMDRCRNQSLRFGTQ---IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK 176
Q RFG + + E + K S K+ K+ LA VIV TG+ KK
Sbjct: 62 ISFXAPWSEQCXRFGLKHEXVGVEQILKNSDGSFTIKL-EGGKTELAKAVIVCTGSAPKK 120
Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
F G D F+ +G+S CA CDG +++K +AV+GGGD+A+EEA +L SK+Y+IHR
Sbjct: 121 AGFKGEDEFFGKGVSTCATCDGF--FYKNKEVAVLGGGDTALEEALYLANICSKIYLIHR 178
Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
RD FRA+ + N KI++I ++ V E YG+ G + DL V G
Sbjct: 179 RDEFRAAPSTVEKVKKNEKIELITSASVDEVYGD---KXGVAGVKVKLKDGSIRDLNVPG 235
Query: 297 LFFAIG--------HEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
+F +G + +KF L +G ++ TSV G+FAAGD++ +
Sbjct: 236 IFTFVGLNVRNEILKQDDSKF----LCNXEEGGQVSVDLKXQTSVAGLFAAGDLRKDAPK 291
Query: 349 QAVTAAGTGCMAALEAEHYLQEI 371
Q + AAG G +AAL A Y++ +
Sbjct: 292 QVICAAGDGAVAALSAXAYIESL 314
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 141/276 (51%), Gaps = 11/276 (3%)
Query: 98 GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF-TETVSKV---DFKSRPFK 153
GGQ+ T D+EN+ P+ G L + + + +++ SK+ + +
Sbjct: 35 GGQILDTVDIENYISVPK-TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQ 93
Query: 154 VFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIG 212
+ T S +VL A ++IVATGA + + PG D + +G++ C CDG P+F+ K +AVIG
Sbjct: 94 IETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIG 151
Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXX 272
GG+S +E A L V ++ +A +++Q++ + +D+I N+ E G+
Sbjct: 152 GGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGD-- 209
Query: 273 XXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTS 332
+G + +++++G+F IG P T +++G ++ + G II T+
Sbjct: 210 GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDA-KCETN 268
Query: 333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 368
V GVFAAGD Y+Q + A G G A+L A YL
Sbjct: 269 VKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 304
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 15/278 (5%)
Query: 98 GGQLTTTSDVENFPGFPQ---GILGGDLMDRCRNQSLRFGTQIFTETVSKV---DFKSRP 151
GGQ+ T D+EN+ P+ L G L + + I +++ SK+ +
Sbjct: 246 GGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDV---IDSQSASKLVPAATEGGL 302
Query: 152 FKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAV 210
++ T S +VL A ++I+ATGA + + PG D + +G++ C CDG P+F+ K +AV
Sbjct: 303 HQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAV 360
Query: 211 IGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGE 270
IGGG+S +E A L V ++ +A +++Q++ + +D+I N+ E G+
Sbjct: 361 IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGD 420
Query: 271 XXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTH 330
+G + + ++G+F IG P T +++G L+ + G II
Sbjct: 421 --GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIID-AKCE 477
Query: 331 TSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 368
TSV GVFAAGD Y+Q + A G G A+L A YL
Sbjct: 478 TSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 515
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 119/271 (43%), Gaps = 9/271 (3%)
Query: 94 DIAPGGQLTTTSD-VENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPF 152
D A G LT + VEN+ GF + I+G +L + + + V + F
Sbjct: 46 DKAVAGGLTAEAPLVENYLGF-KSIVGSELAKLFADHAANYAKIREGVEVRSIKKTQGGF 104
Query: 153 KVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIG 212
+ T+ + A VI+ TG K L G ++ +G S C+ CDG +F+ K + IG
Sbjct: 105 DIETNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGY--LFKGKRVVTIG 162
Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXX 272
GG+S A +++Y V II + + I I N+ V E G+
Sbjct: 163 GGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQE-IKKRNIPYIMNAQVTEIVGDGK 221
Query: 273 XXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFV-DGQLDLHSDGYIITKPGTTHT 331
TG+ ++ G+F +G P T F+ D + L GYI+ T
Sbjct: 222 KVTGVKYKDRT--TGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDS-RQRT 278
Query: 332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAAL 362
SVPGV+AAGDV + Q +A G GC AAL
Sbjct: 279 SVPGVYAAGDVTSGNFAQIASAVGDGCKAAL 309
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 23/271 (8%)
Query: 98 GGQLTT---TSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI-FTETVSKVDFKSR-PF 152
GGQL+ + + GFP+ I +L++ + Q +F I + V V+ ++ F
Sbjct: 43 GGQLSALYPEKYIYDVAGFPK-IRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVF 101
Query: 153 KVFTDSKSVLADTVIVATGAVA---KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLA 209
K+ T+ ++ + TVI+ G A +KL+ ++ + G + D F + +A
Sbjct: 102 KLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQY--EGKNLHYFVDDLQK-FAGRRVA 158
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYG 269
++GGGDSA++ A L +V IIHRRD FRA + L K++V+ V E G
Sbjct: 159 ILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHE-HSVENLHASKVNVLTPFVPAELIG 217
Query: 270 EXXXXXXXXXXXX--XXXTGQVSDLKVS-GLFFAIGHEPATKFVDGQLDLHSDGYIITKP 326
E ++ DL V+ G ++G P + LD+ + ++
Sbjct: 218 EDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLG--PIKNW---GLDIEKNSIVVK-- 270
Query: 327 GTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 357
T T++ G FAAGD+ + + + A+G G
Sbjct: 271 STMETNIEGFFAAGDICTYEGKVNLIASGFG 301
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 97 PGGQLTTTSD---VENFPGFPQGILGGDLMDRCRNQSLRFG-TQIFTETVSKVDFKSRPF 152
PGGQLT + + GFP+ + DL+ Q F E ++ + F
Sbjct: 40 PGGQLTALYPEKYIYDVAGFPK-VYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLF 98
Query: 153 KVFTDS-KSVLADTVIVATGAVA---KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPL 208
KV T + A VI+A G A +++ PG F RG+ AV A F+ K +
Sbjct: 99 KVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVY-YAVKSKAE--FQGKRV 155
Query: 209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASK 244
++GGGDSA++ A L ++ +IHRR FRA +
Sbjct: 156 LIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHE 191
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
D +I++ GAV +L PG D + RG + VIG G +E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
A K G KV +I D R + ++ T+ + + + + A GE
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
T + + + A+G P T ++ G L+LH +G I T TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
D KY A T
Sbjct: 281 DATLIKYNPADT 292
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
D +I++ GAV +L PG D + RG + VIG G +E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
A K G KV +I D R + ++ T+ + + + + A GE
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
T + + + A+G P T ++ G L+LH +G I T TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
D KY A T
Sbjct: 281 DATLIKYNPADT 292
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
D +I++ GAV +L PG D + RG + VIG G +E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
A K G KV +I D R + ++ T+ + + + + A GE
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
T + + + A+G P T ++ G L+LH +G I T TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
D KY A T
Sbjct: 281 DATLIKYNPADT 292
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
D +I++ GAV +L PG D + RG + VIG G +E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
A K G KV +I D R + ++ T+ + + + + A GE
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
T + + + A+G P T ++ G L+LH +G I T TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
D KY A T
Sbjct: 281 DATLIKYNPADT 292
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
D +I++ GAV +L PG D + RG + VIG G +E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
A K G KV +I D R + ++ T+ + + + + A GE
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
T + + + A+G P T ++ G L+LH +G I T TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
D KY A T
Sbjct: 281 DATLIKYNPADT 292
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
D +I++ GAV +L PG D + RG + VIG G +E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
A K G KV +I D R + ++ T+ + + + + A GE
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
T + + + A+G P T ++ G L+LH +G I T TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
D KY A T
Sbjct: 281 DATLIKYNPADT 292
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 112/292 (38%), Gaps = 60/292 (20%)
Query: 114 PQGILGGDLMDRCRNQSLRFGTQIFTET-VSKVDFKSRPFKVFTDSKSVLA--DTVIVAT 170
P+G+ D + + G +++ E+ V +D+ ++ D K+ + D +I AT
Sbjct: 91 PEGLFYSD-----KEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFAT 145
Query: 171 G---------------------AVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRD-KPL 208
G A + LQF + A + +D K +
Sbjct: 146 GSQPILPPIKGAEIKEGSLEFEATLENLQFV---KLYQNSADVIAKLEN-----KDIKRV 197
Query: 209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAY 268
AV+G G +E A + G +V +I D+ A +R LT+ + + A+
Sbjct: 198 AVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG--YYDRDLTDLMAKNMEEHGIQLAF 255
Query: 269 GEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDG-YIITKPG 327
GE T + ++ V + A+G P T +G++DL +G +++ K
Sbjct: 256 GETVKEVAGNGKVEKIITDK-NEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNK-- 312
Query: 328 TTHTSVPGVFAAGD--------VQDKKY--------RQAVTAAGTGCMAALE 363
TS+PGV+A GD +D Y R + AA C LE
Sbjct: 313 RQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDLE 364
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 112/292 (38%), Gaps = 60/292 (20%)
Query: 114 PQGILGGDLMDRCRNQSLRFGTQIFTET-VSKVDFKSRPFKVFTDSKSVLA--DTVIVAT 170
P+G+ D + + G +++ E+ V +D+ ++ D K+ + D +I AT
Sbjct: 91 PEGLFYSD-----KEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFAT 145
Query: 171 G---------------------AVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRD-KPL 208
G A + LQF + A + +D K +
Sbjct: 146 GSQPILPPIKGAEIKEGSLEFEATLENLQFV---KLYQNSADVIAKLEN-----KDIKRV 197
Query: 209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAY 268
AV+G G +E A + G +V +I D+ A +R LT+ + + A+
Sbjct: 198 AVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG--YYDRDLTDLMAKNMEEHGIQLAF 255
Query: 269 GEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDG-YIITKPG 327
GE T + ++ V + A+G P T +G++DL +G +++ K
Sbjct: 256 GETVKEVAGNGKVEKIITDK-NEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNK-- 312
Query: 328 TTHTSVPGVFAAGD--------VQDKKY--------RQAVTAAGTGCMAALE 363
TS+PGV+A GD +D Y R + AA C LE
Sbjct: 313 RQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDLE 364
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 41/268 (15%)
Query: 98 GGQLTT---TSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI-FTETVSK-VDFKSRPF 152
GGQL + + GFP+ + DL++ Q+ R+ + ETV+K F
Sbjct: 50 GGQLAALYPEKHIYDVAGFPE-VPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTF 108
Query: 153 KVFTDSKSVL-ADTVIVATGAVA---KKL-------QFPGSDAFWNRGISACAVCDGAAP 201
+ T++ +V + V++A G A +KL GS ++ + +V D
Sbjct: 109 ETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYY----AVKSVED---- 160
Query: 202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQN---RALTNPKIDV 258
F+ K + ++GGGDSA++ L K + V ++HR F+ + RA N IDV
Sbjct: 161 -FKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDV 219
Query: 259 IWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHE----PATKFVDGQL 314
+ E G ++ L IG + P ++ L
Sbjct: 220 YLET---EVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARW---DL 273
Query: 315 DLHSDGYIITKPGTTHTSVPGVFAAGDV 342
+L+ + ++ TSV G++AAGD+
Sbjct: 274 ELYENALVVDS--HMKTSVDGLYAAGDI 299
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
D +I++ GA A L F F R + D + + V+G G ++E
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
L + G +IHR D + +K+M + + P +D + + E
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
+ D+ + G +G P +KF++ + L G+I T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
YR
Sbjct: 278 ATSHYRH 284
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
D +I++ GA A L F F R + D + + V+G G ++E
Sbjct: 107 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 166
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
L + G +IHR D + +K+M + + P +D + + E
Sbjct: 167 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 223
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
+ D+ + G +G P +KF++ + L G+I T+VP ++A GD+
Sbjct: 224 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 278
Query: 343 QDKKYRQ 349
YR
Sbjct: 279 ATSHYRH 285
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
D +I++ GA A L F F R + D + + V+G G ++E
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
L + G +IHR D + +K+M + + P +D + + E
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
+ D+ + G +G P +KF++ + L G+I T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
YR
Sbjct: 278 ATSHYRH 284
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
D +I++ GA A L F F R + D + + V+G G ++E
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
L + G +IHR D + +K+M + + P +D + + E
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
+ D+ + G +G P +KF++ + L G+I T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
YR
Sbjct: 278 ATSHYRH 284
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
D +I++ GA A L F F R + D + + V+G G ++E
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
L + G +IHR D + +K+M + + P +D + + E
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
+ D+ + G +G P +KF++ + L G+I T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
YR
Sbjct: 278 ATSHYRH 284
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
D +I++ GA A L F F R + D + + V+G G ++E
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
L + G +IHR D + +K+M + + P +D + + E
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
+ D+ + G +G P +KF++ + L G+I T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
YR
Sbjct: 278 ATSHYRH 284
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
D +I++ GA A L F F R + D + + V+G G ++E
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
L + G +IHR D + +K+M + + P +D + + E
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
+ D+ + G +G P +KF++ + L G+I T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
YR
Sbjct: 278 ATSHYRH 284
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 36/232 (15%)
Query: 127 RNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADT--VIVATGAVAKKLQFPGSDA 184
RN S ++ T F + K+ + + K + A+T +I+A+GA KL+ PG
Sbjct: 96 RNMS-QYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPG--- 151
Query: 185 FWNRGISACAVCD---GAAPIFRDKP--LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239
+ C D G FR P + +IG G +E A+ G + +II D
Sbjct: 152 -----VEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLD- 205
Query: 240 FRASKIMQNRALTNP-----KIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKV 294
RA ++++ + N K+++ +NS V E G +
Sbjct: 206 -RALITLEDQDIVNTLLSILKLNIKFNSPVTEV---KKIKDDEYEVIYSTKDGSKKSIFT 261
Query: 295 SGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG-----TTHTSVPGVFAAGD 341
+ + A G P +G ++ G I+K G T T++P VFA GD
Sbjct: 262 NSVVLAAGRRPVIP--EGAREI---GLSISKTGIVVDETMKTNIPNVFATGD 308
>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera
pdb|1ZX9|A Chain A, Crystal Structure Of Tn501 Mera
Length = 467
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 18/192 (9%)
Query: 159 KSVLADTVIVATGAVAKKLQFPG--SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS 216
+ V+ D +VATGA PG +W S A+ P + LAVIG
Sbjct: 135 RVVMFDRCLVATGASPAVPPIPGLKESPYWT---STEALASDTIP----ERLAVIGSSVV 187
Query: 217 AMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXX 276
A+E A + GSKV ++ R F A+T + + +E
Sbjct: 188 ALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVT-----AAFRAEGIEVLEHTQASQV 242
Query: 277 XXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHTSV 333
T +L+ L A G P T+ + + +++ G I+ G TS
Sbjct: 243 AHMDGEFVLTTTHGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQG-MRTSN 301
Query: 334 PGVFAAGDVQDK 345
P ++AAGD D+
Sbjct: 302 PNIYAAGDCTDQ 313
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 142 VSKVDFKSRPFKVFT---DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDG 198
+++VD +R T + + + AD +++ATG + PG++ GI++ DG
Sbjct: 107 ITRVDGHARFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLPGAEL----GITS----DG 158
Query: 199 AAPIFRD-KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKID 257
+ + K +A+IG G +E A L +GS+V ++ D + Q L + +
Sbjct: 159 FFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL----LFQFDPLLSATLA 214
Query: 258 VIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG---LFFAIGHEPATK---FVD 311
++ +E + E Q ++ G + +A+G P T+
Sbjct: 215 ENMHAQGIETHLEFAVAALERDAQGTTLVAQ-DGTRLEGFDSVIWAVGRAPNTRDLGLEA 273
Query: 312 GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 345
+++ S+G + T +T+VPGV+A GD+ +
Sbjct: 274 AGIEVQSNGMVPTD-AYQNTNVPGVYALGDITGR 306
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 30/245 (12%)
Query: 105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLAD 164
S V+ G +G+L G+ ++ + ++ + TV V+ S F ++
Sbjct: 88 SVVKKLTGGVEGLLKGNKVEIVKGEAYF----VDANTVRVVNGDSAQTYTFKNA------ 137
Query: 165 TVIVATGAVAKKLQFPGSDAFWNRGI-SACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
I+ATG+ + ++ P F NR + S A+ G P K L VIGGG +E
Sbjct: 138 --IIATGS--RPIELPNFK-FSNRILDSTGALNLGEVP----KSLVVIGGGYIGIELGTA 188
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
+G+KV I+ + Q A+ ++ VV A +
Sbjct: 189 YANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTY 248
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTH------TSVPGVF 337
G+ + + +G P T +L L G +T G TSVP +F
Sbjct: 249 EANGETKTIDADYVLVTVGRRPNTD----ELGLEQIGIKMTNRGLIEVDQQCRTSVPNIF 304
Query: 338 AAGDV 342
A GD+
Sbjct: 305 AIGDI 309
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 48/214 (22%)
Query: 152 FKVFTDSKS-------VLADTVIVATGAVAKKLQFPG------SDAFWNRGISACAVCDG 198
F F D+K+ + AD +++ATG PG SD F+
Sbjct: 114 FARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFF------------ 161
Query: 199 AAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRASKIMQNRALTNPKID 257
A P ++ +AV+G G A+E A + G+K ++ R+ + R+ M + L
Sbjct: 162 ALPALPER-VAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVE---- 216
Query: 258 VIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVS-DLK------VSGLFFAIGHEPATKFV 310
V+ A G G ++ +L+ V L +AIG EPA +
Sbjct: 217 ------VMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNI 270
Query: 311 DGQ---LDLHSDGYIITKPGTTHTSVPGVFAAGD 341
+ + + + GYI+ +T++ G++A GD
Sbjct: 271 NLEAAGVKTNEKGYIVVDK-YQNTNIEGIYAVGD 303
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 85/228 (37%), Gaps = 46/228 (20%)
Query: 142 VSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAP 201
V+ +D ++R D ++ AD +++ATG+ A+ + PGS G+ G
Sbjct: 80 VTALDVQTRTIS-LDDGTTLSADAIVIATGSRARTMALPGSQL---PGVVTLRTY-GDVQ 134
Query: 202 IFRDK-----PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNR------- 249
+ RD L ++GGG E A K G V I+ D +++ R
Sbjct: 135 VLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV-RVLGRRIGAWLRG 193
Query: 250 ALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVS--------GLFFAI 301
LT + V + V+ GE GQ+ + S +
Sbjct: 194 LLTELGVQVELGTGVVGFSGE----------------GQLEQVMASDGRSFVADSALICV 237
Query: 302 GHEPATKFVDGQLDLHSD-GYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
G EPA + Q L D G I+ G T GVFA GDV R
Sbjct: 238 GAEPADQLAR-QAGLACDRGVIVDHCGATLAK--GVFAVGDVASWPLR 282
>pdb|4FK1|A Chain A, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|B Chain B, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|C Chain C, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|D Chain D, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
Length = 304
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 152 FKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAV 210
F++ T D LA+ V++ATG + P ++ + + +C CDG +D+PL +
Sbjct: 94 FEIVTKDHTKYLAERVLLATGXQEEFPSIPNVREYYGKSLFSCPYCDGWE--LKDQPLII 151
Query: 211 IG-GGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSV 263
I D + + + + + I + S+ + + L+N I VI S+
Sbjct: 152 ISENEDHTLHXTKLVYNWSTDLVIATNGNEL--SQTIXDE-LSNKNIPVITESI 202
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 15/206 (7%)
Query: 163 ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEAN 222
A +I+A GA L PG +A +G+ A + V+GG +A+E
Sbjct: 175 AKNLILAVGAGPGTLDVPGVNA---KGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGC 231
Query: 223 FLTKYGSKVYIIHRRDSFRASKIMQNRA-----LTNPKIDVIWNSVVLEAYGEXXXXXXX 277
F G + ++ R + + K + RA + +++I S V E
Sbjct: 232 FFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRI--EEDANGRV 289
Query: 278 XXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDG--QLDLHSDGYIITKPGTTHTSVPG 335
G++ ++ +F +G +P + + LDL G ++ TSVP
Sbjct: 290 QAVVAMTPNGEMR-IETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNE-YLQTSVPN 347
Query: 336 VFAAGDVQDKKYRQAVTAAGTGCMAA 361
V+A GD+ + A +GC AA
Sbjct: 348 VYAVGDLIGGPM-EMFKARKSGCYAA 372
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 5/179 (2%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRD-KPLAVIGGGDSAMEEAN 222
D +I+ATGA Q GS + A P+ + + +AVIG G E +
Sbjct: 105 DKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGXEAID 164
Query: 223 FLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXX 282
FL K V++ ++ K + + + +V+ + E
Sbjct: 165 FLVKXKKTVHVFESLENL-LPKYFDKEXVAEVQKSLEKQAVIFH-FEETVLGIEETANGI 222
Query: 283 XXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGD 341
T + ++ FA+ P ++D ++ + D I TSVP VFA GD
Sbjct: 223 VLETSE-QEISCDSGIFALNLHPQLAYLDKKIQRNLDQ-TIAVDAYLQTSVPNVFAIGD 279
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 10/191 (5%)
Query: 153 KVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIG 212
+V D + + + +++ATG+ ++ P G + + AP + L V+G
Sbjct: 125 QVEVDGQRIQCEHLLLATGS--SSVELP----MLPLGGPVISSTEALAPKALPQHLVVVG 178
Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXX 272
GG +E K G++V ++ R+ + + LT P + + + G
Sbjct: 179 GGYIGLELGIAYRKLGAQVSVVEARERILPTY---DSELTAPVAESLKKLGIALHLGHSV 235
Query: 273 XXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQ-LDLHSDGYIITKPGTTHT 331
G L+ + A+G P TK + + LDL +G I T
Sbjct: 236 EGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQT 295
Query: 332 SVPGVFAAGDV 342
S+ V+A GDV
Sbjct: 296 SMHNVWAIGDV 306
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 61 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
V ++G GP LK ++ +G + ++ S V N+PG G
Sbjct: 4 VIVVGGGPSGLSAALFLARAGLKVLVLDGGRS-------KVKGVSRVPNYPGLLDEPSGE 56
Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVAT 170
+L+ R + R+G ++ V V F+V T+ A+ +++ T
Sbjct: 57 ELLRRLEAHARRYGAEVRPGVVKGVRDXGGVFEVETEEGVEKAERLLLCT 106
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRA--SKIMQN--RALTNPKIDVIWNSVV 264
++G G A+E A L+ GSK ++ R D R+ S I N L N ++V+ S V
Sbjct: 193 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV 252
Query: 265 LEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFVD-GQLDLHSD--G 320
E ++ + V L +AIG P TK + +L + +D G
Sbjct: 253 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKG 312
Query: 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
+II +T+V G++A GDV K V A
Sbjct: 313 HIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIAA 346
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRA--SKIMQN--RALTNPKIDVIWNSVV 264
++G G A+E A L+ GSK ++ R D R+ S I N L N ++V+ S V
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV 251
Query: 265 LEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFVD-GQLDLHSD--G 320
E ++ + V L +AIG P TK + +L + +D G
Sbjct: 252 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKG 311
Query: 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAA 354
+II +T+V G++A GDV K V A
Sbjct: 312 HIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIA 344
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRA--SKIMQN--RALTNPKIDVIWNSVV 264
++G G A+E A L+ GSK ++ R D R+ S I N L N ++V+ S V
Sbjct: 191 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV 250
Query: 265 LEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFVD-GQLDLHSD--G 320
E ++ + V L +AIG P TK + +L + +D G
Sbjct: 251 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKG 310
Query: 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
+II +T+V G++A GDV K V A
Sbjct: 311 HIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIAA 344
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRA--SKIMQN--RALTNPKIDVIWNSVV 264
++G G A+E A L+ GSK ++ R D R+ S I N L N ++V+ S V
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV 251
Query: 265 LEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFVD-GQLDLHSD--G 320
E ++ + V L +AIG P TK + +L + +D G
Sbjct: 252 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKG 311
Query: 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
+II +T+V G++A GDV K V A
Sbjct: 312 HIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIAA 345
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRA--SKIMQN--RALTNPKIDVIWNSVV 264
++G G A+E A L+ GSK ++ R D R+ S I N L N ++V+ S V
Sbjct: 177 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV 236
Query: 265 LEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFVD-GQLDLHSD--G 320
E ++ + V L +AIG P TK + +L + +D G
Sbjct: 237 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKG 296
Query: 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
+II +T+V G++A GDV K V A
Sbjct: 297 HIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIAA 330
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRA--SKIMQN--RALTNPKIDVIWNSVV 264
++G G A+E A L+ GSK ++ R D R+ S I N L N ++V+ S V
Sbjct: 175 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV 234
Query: 265 LEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFVD-GQLDLHSD--G 320
E ++ + V L +AIG P TK + +L + +D G
Sbjct: 235 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKG 294
Query: 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
+II +T+V G++A GDV K V A
Sbjct: 295 HIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIAA 328
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRA--SKIMQN--RALTNPKIDVIWNSVV 264
++G G A+E A L+ GSK ++ R D R+ S I N L N ++V+ S V
Sbjct: 175 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV 234
Query: 265 LEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFVD-GQLDLHSD--G 320
E ++ + V L +AIG P TK + +L + +D G
Sbjct: 235 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKG 294
Query: 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAA 354
+II +T+V G++A GDV K V A
Sbjct: 295 HIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIA 327
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRA--SKIMQN--RALTNPKIDVIWNSVV 264
++G G A+E A L+ GSK ++ R D R+ S I N L N ++V+ S V
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV 251
Query: 265 LEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFVD-GQLDLHSD--G 320
E ++ + V L +AIG P TK + +L + +D G
Sbjct: 252 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKG 311
Query: 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
+II +T+V G++A GDV K V A
Sbjct: 312 HIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIAA 345
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRA--SKIMQN--RALTNPKIDVIWNSVV 264
++G G A+E A L+ GSK ++ R D R+ S I N L N ++V+ S V
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV 251
Query: 265 LEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFVD-GQLDLHSD--G 320
E ++ + V L +AIG P TK + +L + +D G
Sbjct: 252 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKG 311
Query: 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
+II +T+V G++A GDV K V A
Sbjct: 312 HIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIAA 345
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 19/199 (9%)
Query: 160 SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 219
++ + +I+ATG K + PG+ + GI++ + + P F K L VIG A+E
Sbjct: 247 TITGNKIILATGERPKYPEIPGAVEY---GITSDDLF--SLPYFPGKTL-VIGASYVALE 300
Query: 220 EANFLTKYGSKVYIIHRR------DSFRASKI---MQNRALTNPKIDVIWNSVVLEAYGE 270
A FL G V ++ R D A K+ M+N + K+ V L+
Sbjct: 301 CAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDT 360
Query: 271 XXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQ---LDLHSDGYIITKPG 327
G+ + + + FA+G EP V + + L +G ++
Sbjct: 361 ENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCT-D 419
Query: 328 TTHTSVPGVFAAGDVQDKK 346
T+V V+A GD+ K
Sbjct: 420 DEQTTVSNVYAIGDINAGK 438
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 19/199 (9%)
Query: 160 SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 219
++ + +I+ATG K + PG+ + GI++ + + P F K L VIG A+E
Sbjct: 247 TITGNKIILATGERPKYPEIPGAVEY---GITSDDLF--SLPYFPGKTL-VIGASYVALE 300
Query: 220 EANFLTKYGSKVYIIHRR------DSFRASKI---MQNRALTNPKIDVIWNSVVLEAYGE 270
A FL G V ++ R D A K+ M+N + K+ V L+
Sbjct: 301 CAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDT 360
Query: 271 XXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQ---LDLHSDGYIITKPG 327
G+ + + + FA+G EP V + + L +G ++
Sbjct: 361 ENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCT-D 419
Query: 328 TTHTSVPGVFAAGDVQDKK 346
T+V V+A GD+ K
Sbjct: 420 DEQTTVSNVYAIGDINAGK 438
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRA--SKIMQN--RALTNPKIDVIWNSVV 264
++G G A+E A L+ GSK ++ R D R+ S I N L N ++V+ S V
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNXTEELENAGVEVLKFSQV 251
Query: 265 LEAYGEXXXXXXXXXXXXXXXTGQVSDL-KVSGLFFAIGHEPATKFVD-GQLDLHSD--G 320
E ++ + V L +AIG P TK + +L + +D G
Sbjct: 252 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKDLSLNKLGIQTDDKG 311
Query: 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
+II +T+V G++A GDV K V A
Sbjct: 312 HIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIAA 345
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 19/199 (9%)
Query: 160 SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 219
++ + +I+ATG K + PG+ + GI++ + + P F K L VIG A+E
Sbjct: 247 TITGNKIILATGERPKYPEIPGAVEY---GITSDDLF--SLPYFPGKTL-VIGASYVALE 300
Query: 220 EANFLTKYGSKVYIIHRR------DSFRASKI---MQNRALTNPKIDVIWNSVVLEAYGE 270
A FL G V ++ R D A K+ M+N + K+ V L+
Sbjct: 301 CAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDT 360
Query: 271 XXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQ---LDLHSDGYIITKPG 327
G+ + + + FA+G EP V + + L +G ++
Sbjct: 361 ENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCT-D 419
Query: 328 TTHTSVPGVFAAGDVQDKK 346
T+V V+A GD+ K
Sbjct: 420 DEQTTVSNVYAIGDINAGK 438
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 163 ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIF----RDKPLAVIGGGDSAM 218
A+ +++ATGA N I +C + IF K + ++GGG +
Sbjct: 155 AEKILIATGA----------KIVSNSAIKGSDLCLTSNEIFDLEKLPKSIVIVGGGYIGV 204
Query: 219 EEANFLTKYGSKVYIIHRRDSFRAS-----KIMQNRALTNPKIDVIWNSVV 264
E AN G K ++HR D + + + N A+ I +I+ + V
Sbjct: 205 EFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATV 255
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 21/156 (13%)
Query: 206 KPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSFRASKIMQNRALTNPK---IDVIWN 261
K + V+GGGD+AM+ + G + V ++RRD R + R + + + ++ IW
Sbjct: 265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD--RKNMPGSQREVAHAEEEGVEFIWQ 322
Query: 262 SVVLEAYGEXXXXXXXXXXXX---XXXTGQVSDLKVSGLFF---------AIGHEPA--- 306
+ G+ TG+ + + G F A+G EP
Sbjct: 323 AAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLP 382
Query: 307 TKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
F + +L + G ++ T T++ GVFAAGD+
Sbjct: 383 NAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
+ VIGGG S + A LT+YG V ++ RD
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARD 35
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
+ VIGGG S + A LT+YG V ++ RD
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARD 46
>pdb|4DMR|A Chain A, Reduced Dmso Reductase From Rhodobacter Capsulatus With
Bound Dmso Substrate
Length = 823
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 174 AKKLQFPGSDAFWNRGISACAVCDGAAPI----FRDKPL 208
A +Q P DAFW GI V DGA + FR+ PL
Sbjct: 593 AAGVQMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 631
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 174 AKKLQFPGSDAFWNRGISACAVCDGAAPI----FRDKPL 208
A +Q P DAFW GI V DGA + FR+ PL
Sbjct: 593 AAGVQMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 631
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
+ VIGGG S + A LT+YG V ++ RD
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARD 35
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 142 VSKVDFKSR-PFKVFTDSKSVLA---DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCD 197
V+KVD + + + T +K V D +++ATG ++ G D +G+
Sbjct: 116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDL---QGVHLLKTIP 172
Query: 198 GAAPIFRD------KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
A I + + + +IGGG +E A + G KV +I R D
Sbjct: 173 DAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHI 221
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 142 VSKVDFKSR-PFKVFTDSKSVLA---DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCD 197
V+KVD + + + T +K V D +++ATG ++ G D +G+
Sbjct: 116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVXPEWEGRDL---QGVHLLKTIP 172
Query: 198 GAAPIFRD------KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
A I + + + +IGGG +E A + G KV I R D
Sbjct: 173 DAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXIERNDHI 221
>pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 174 AKKLQFPGSDAFWNRGISACAVCDGAAPI----FRDKPL 208
A ++ P DAFW GI V DGA + FR+ PL
Sbjct: 593 AAGVEMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 631
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 174 AKKLQFPGSDAFWNRGISACAVCDGAAPI----FRDKPL 208
A ++ P DAFW GI V DGA + FR+ PL
Sbjct: 593 AAGVEMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 631
>pdb|1DMS|A Chain A, Structure Of Dmso Reductase
Length = 781
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 174 AKKLQFPGSDAFWNRGISACAVCDGAAPI----FRDKPL 208
A ++ P DAFW GI V DGA + FR+ PL
Sbjct: 551 AGGVEMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 589
>pdb|1PJQ|A Chain A, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJQ|B Chain B, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJS|A Chain A, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
pdb|1PJS|B Chain B, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
Length = 457
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 201 PIF---RDKPLAVIGGGDSAMEEANFLTKYGSKVYI 233
PIF RD+ ++GGGD A +A L + G+++ +
Sbjct: 5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTV 40
>pdb|1PJT|A Chain A, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
pdb|1PJT|B Chain B, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
Length = 457
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 201 PIF---RDKPLAVIGGGDSAMEEANFLTKYGSKVYI 233
PIF RD+ ++GGGD A +A L + G+++ +
Sbjct: 5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTV 40
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIM 246
+ DK +A+IGGG + A L + G V ++ RD+ R ++I
Sbjct: 24 LLSDKNVAIIGGGPVGLTXAKLLQQNGIDVS-VYERDNDREARIF 67
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIM 246
+ DK +A+IGGG + A L + G V ++ RD+ R ++I
Sbjct: 3 LLSDKNVAIIGGGPVGLTXAKLLQQNGIDVS-VYERDNDREARIF 46
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 297 LFFAIGHEPATK---FVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
L A+G P T D + L G+I TSVPGVFA GDV
Sbjct: 272 LIVAVGRRPVTTDLLAADSGVTLDERGFIYVDD-HCKTSVPGVFAIGDV 319
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 83/216 (38%), Gaps = 61/216 (28%)
Query: 157 DSKSVLADT--VIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKP--LAVIG 212
D S + DT VI+A+G+ K ++ P + + + + D F++ P L VIG
Sbjct: 135 DGSSQVLDTENVILASGS--KPVEIPPAPVDQDVIVDSTGALD-----FQNVPGKLGVIG 187
Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSF----------RASKIMQNRALT---------- 252
G +E + + G++V ++ D F A KI+ + L
Sbjct: 188 AGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGT 247
Query: 253 ---NPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATK- 308
N ++ V + ++A GE Q D L A+G P T
Sbjct: 248 EVKNKQVTVKF----VDAEGEKS---------------QAFD----KLIVAVGRRPVTTD 284
Query: 309 --FVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
D + L G+I TSVPGV+A GDV
Sbjct: 285 LLAADSGVTLDERGFIYVDD-YCATSVPGVYAIGDV 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,994,299
Number of Sequences: 62578
Number of extensions: 369952
Number of successful extensions: 1187
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1025
Number of HSP's gapped (non-prelim): 113
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)