Query 016820
Match_columns 382
No_of_seqs 229 out of 2790
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0404 Thioredoxin reductase 100.0 4.2E-48 9.2E-53 315.9 24.8 312 57-370 7-320 (322)
2 COG0492 TrxB Thioredoxin reduc 100.0 6.6E-44 1.4E-48 320.3 32.2 301 57-371 2-303 (305)
3 TIGR01292 TRX_reduct thioredox 100.0 3.7E-43 8E-48 321.7 35.1 298 59-368 1-300 (300)
4 PRK10262 thioredoxin reductase 100.0 5.7E-42 1.2E-46 316.3 33.1 307 56-372 4-318 (321)
5 TIGR03143 AhpF_homolog putativ 100.0 7.9E-41 1.7E-45 328.3 34.7 304 58-373 4-313 (555)
6 PRK15317 alkyl hydroperoxide r 100.0 2.2E-40 4.9E-45 323.2 34.3 304 57-372 210-515 (517)
7 TIGR03140 AhpF alkyl hydropero 100.0 2.6E-40 5.6E-45 322.4 31.9 302 56-370 210-514 (515)
8 COG1252 Ndh NADH dehydrogenase 100.0 4.4E-39 9.5E-44 295.3 21.5 296 57-379 2-342 (405)
9 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.8E-37 4E-42 291.8 31.6 290 57-366 3-334 (454)
10 TIGR01424 gluta_reduc_2 glutat 100.0 2.9E-37 6.3E-42 296.7 30.9 285 58-366 2-325 (446)
11 PRK06370 mercuric reductase; V 100.0 1.1E-36 2.5E-41 294.3 32.0 289 57-366 4-333 (463)
12 TIGR01421 gluta_reduc_1 glutat 100.0 1.3E-36 2.7E-41 291.9 32.0 284 58-365 2-326 (450)
13 PRK05249 soluble pyridine nucl 100.0 7.7E-37 1.7E-41 295.7 30.5 288 56-365 3-333 (461)
14 PRK06116 glutathione reductase 100.0 1.6E-36 3.5E-41 292.3 31.2 285 57-366 3-327 (450)
15 PLN02507 glutathione reductase 100.0 1.6E-36 3.4E-41 294.0 29.9 291 56-365 23-361 (499)
16 PTZ00318 NADH dehydrogenase-li 100.0 5E-37 1.1E-41 293.0 24.2 299 57-378 9-358 (424)
17 PRK06416 dihydrolipoamide dehy 100.0 4.4E-36 9.6E-41 290.4 30.9 290 57-366 3-333 (462)
18 PRK08010 pyridine nucleotide-d 100.0 4.2E-36 9.2E-41 288.7 29.5 288 58-365 3-315 (441)
19 TIGR02053 MerA mercuric reduct 100.0 9E-36 2E-40 288.2 31.8 289 59-366 1-328 (463)
20 PRK06467 dihydrolipoamide dehy 100.0 1.3E-35 2.9E-40 286.5 31.8 291 57-366 3-336 (471)
21 PLN02546 glutathione reductase 100.0 8.3E-36 1.8E-40 290.2 30.0 290 57-366 78-412 (558)
22 PRK12831 putative oxidoreducta 100.0 4.4E-36 9.6E-41 288.3 27.5 295 57-370 139-462 (464)
23 PRK14694 putative mercuric red 100.0 2.1E-35 4.6E-40 285.5 31.3 288 54-365 2-333 (468)
24 TIGR01316 gltA glutamate synth 100.0 1.5E-35 3.3E-40 284.2 28.4 289 57-368 132-449 (449)
25 PRK13512 coenzyme A disulfide 100.0 4.1E-36 8.8E-41 287.9 24.3 284 59-365 2-310 (438)
26 PRK07251 pyridine nucleotide-d 100.0 2.2E-35 4.8E-40 283.5 28.7 288 58-365 3-314 (438)
27 PRK07845 flavoprotein disulfid 100.0 6.5E-35 1.4E-39 281.5 31.1 287 59-365 2-335 (466)
28 PRK14727 putative mercuric red 100.0 1.2E-34 2.6E-39 280.5 33.0 287 57-365 15-344 (479)
29 TIGR01423 trypano_reduc trypan 100.0 7.8E-35 1.7E-39 280.4 31.1 291 57-365 2-349 (486)
30 PRK13748 putative mercuric red 100.0 7E-35 1.5E-39 288.7 31.3 286 57-365 97-426 (561)
31 PRK09564 coenzyme A disulfide 100.0 2.9E-35 6.2E-40 283.7 25.7 288 59-366 1-316 (444)
32 PRK06292 dihydrolipoamide dehy 100.0 3.1E-34 6.7E-39 277.5 31.9 290 57-367 2-331 (460)
33 TIGR03169 Nterm_to_SelD pyridi 100.0 2.1E-35 4.4E-40 277.5 23.0 294 60-379 1-321 (364)
34 PTZ00058 glutathione reductase 100.0 3.8E-34 8.3E-39 278.4 32.2 291 56-366 46-431 (561)
35 PRK06327 dihydrolipoamide dehy 100.0 4.7E-34 1E-38 276.4 32.5 297 58-366 4-346 (475)
36 PRK06115 dihydrolipoamide dehy 100.0 1.5E-34 3.2E-39 279.0 28.9 292 58-366 3-337 (466)
37 PRK07846 mycothione reductase; 100.0 2.9E-34 6.3E-39 275.5 30.4 283 58-366 1-324 (451)
38 PRK05976 dihydrolipoamide dehy 100.0 6.2E-34 1.4E-38 275.7 32.9 291 57-365 3-341 (472)
39 PTZ00052 thioredoxin reductase 100.0 4.2E-34 9.2E-39 277.3 31.7 290 58-365 5-339 (499)
40 TIGR01438 TGR thioredoxin and 100.0 6.2E-34 1.3E-38 274.9 32.5 295 58-366 2-343 (484)
41 PRK11749 dihydropyrimidine deh 100.0 2E-34 4.3E-39 277.9 27.9 294 56-372 138-455 (457)
42 PRK14989 nitrite reductase sub 100.0 6.4E-35 1.4E-39 295.8 25.0 288 58-366 3-309 (847)
43 PRK04965 NADH:flavorubredoxin 100.0 2.4E-34 5.3E-39 271.1 27.0 284 59-366 3-301 (377)
44 PRK12779 putative bifunctional 100.0 6.6E-34 1.4E-38 290.9 31.8 290 57-370 305-628 (944)
45 TIGR01350 lipoamide_DH dihydro 100.0 1.1E-33 2.5E-38 273.8 31.6 288 59-366 2-331 (461)
46 PRK06912 acoL dihydrolipoamide 100.0 9.5E-34 2E-38 273.2 30.4 284 60-365 2-328 (458)
47 PRK07818 dihydrolipoamide dehy 100.0 5E-34 1.1E-38 275.9 27.7 289 58-365 4-334 (466)
48 COG3634 AhpF Alkyl hydroperoxi 100.0 7.2E-35 1.6E-39 253.2 19.3 304 55-370 208-516 (520)
49 PRK09754 phenylpropionate diox 100.0 2.7E-34 5.9E-39 272.2 25.1 285 58-366 3-308 (396)
50 PTZ00153 lipoamide dehydrogena 100.0 5.6E-33 1.2E-37 273.5 32.5 295 58-366 116-494 (659)
51 PRK12814 putative NADPH-depend 100.0 1.4E-33 3E-38 281.3 28.4 297 57-374 192-506 (652)
52 PRK12778 putative bifunctional 100.0 1.1E-33 2.4E-38 287.3 27.8 293 57-371 430-752 (752)
53 PRK12775 putative trifunctiona 100.0 3E-33 6.4E-38 288.6 28.8 294 57-374 429-760 (1006)
54 PRK12770 putative glutamate sy 100.0 4.6E-33 1E-37 259.7 27.4 296 57-370 17-351 (352)
55 TIGR03452 mycothione_red mycot 100.0 1.3E-32 2.8E-37 264.4 29.4 283 58-366 2-327 (452)
56 PRK12810 gltD glutamate syntha 100.0 1.6E-32 3.5E-37 265.0 28.4 290 57-373 142-469 (471)
57 TIGR02374 nitri_red_nirB nitri 100.0 3.4E-33 7.4E-38 283.6 23.8 281 61-365 1-299 (785)
58 PRK09853 putative selenate red 100.0 3.1E-32 6.8E-37 274.5 29.9 289 57-369 538-842 (1019)
59 TIGR03315 Se_ygfK putative sel 100.0 1.7E-31 3.7E-36 270.6 27.8 289 57-369 536-840 (1012)
60 PRK12769 putative oxidoreducta 100.0 2.6E-31 5.6E-36 266.1 28.7 293 57-371 326-654 (654)
61 KOG0405 Pyridine nucleotide-di 100.0 5.2E-31 1.1E-35 229.2 25.5 290 56-367 18-350 (478)
62 TIGR01317 GOGAT_sm_gam glutama 100.0 9E-31 1.9E-35 253.0 29.0 293 58-374 143-484 (485)
63 TIGR01318 gltD_gamma_fam gluta 100.0 9.1E-31 2E-35 252.0 28.3 288 57-369 140-466 (467)
64 KOG1335 Dihydrolipoamide dehyd 100.0 7.6E-31 1.6E-35 231.0 23.4 294 57-366 38-376 (506)
65 PLN02172 flavin-containing mon 100.0 2.7E-30 5.9E-35 246.9 27.4 282 57-362 9-346 (461)
66 PRK12809 putative oxidoreducta 100.0 5.6E-30 1.2E-34 255.4 27.0 293 57-371 309-637 (639)
67 PRK13984 putative oxidoreducta 100.0 1.2E-29 2.6E-34 252.7 27.1 288 57-370 282-603 (604)
68 PLN02852 ferredoxin-NADP+ redu 100.0 3.3E-29 7.2E-34 238.6 27.5 293 57-371 25-424 (491)
69 PRK12771 putative glutamate sy 100.0 7.1E-29 1.5E-33 244.9 27.8 291 57-373 136-448 (564)
70 KOG2495 NADH-dehydrogenase (ub 100.0 1.1E-29 2.4E-34 227.2 19.7 301 54-373 51-401 (491)
71 KOG1336 Monodehydroascorbate/f 100.0 8E-30 1.7E-34 232.3 18.4 287 58-365 74-381 (478)
72 TIGR03385 CoA_CoA_reduc CoA-di 100.0 6E-29 1.3E-33 238.4 21.8 274 72-366 1-303 (427)
73 KOG4716 Thioredoxin reductase 100.0 7.1E-29 1.5E-33 215.2 19.9 301 55-366 16-364 (503)
74 TIGR01372 soxA sarcosine oxida 100.0 2E-27 4.3E-32 246.9 31.3 285 57-370 162-473 (985)
75 COG1251 NirB NAD(P)H-nitrite r 100.0 6.1E-29 1.3E-33 236.5 17.0 290 58-370 3-309 (793)
76 PF00743 FMO-like: Flavin-bind 100.0 7.5E-27 1.6E-31 226.0 20.8 284 59-363 2-391 (531)
77 COG0493 GltD NADPH-dependent g 99.9 2.6E-24 5.7E-29 203.1 15.7 291 58-369 123-451 (457)
78 PF13738 Pyr_redox_3: Pyridine 99.9 6.2E-23 1.3E-27 176.9 15.2 169 62-239 1-201 (203)
79 KOG1399 Flavin-containing mono 99.9 5.7E-22 1.2E-26 186.3 22.2 232 57-311 5-275 (448)
80 PF13434 K_oxygenase: L-lysine 99.9 1.3E-22 2.9E-27 186.7 17.4 245 58-304 2-340 (341)
81 COG0446 HcaD Uncharacterized N 99.9 8.4E-22 1.8E-26 188.5 21.5 287 61-367 1-310 (415)
82 PRK06567 putative bifunctional 99.9 4.3E-21 9.3E-26 191.9 22.7 275 56-374 381-775 (1028)
83 KOG0399 Glutamate synthase [Am 99.9 1.4E-21 3.1E-26 191.2 16.1 290 57-372 1784-2123(2142)
84 COG2072 TrkA Predicted flavopr 99.9 5.7E-21 1.2E-25 182.2 19.6 179 56-240 6-210 (443)
85 KOG3851 Sulfide:quinone oxidor 99.9 3.1E-21 6.7E-26 166.7 10.6 301 55-374 36-366 (446)
86 COG3486 IucD Lysine/ornithine 99.8 7.6E-19 1.7E-23 157.7 22.9 312 56-373 3-415 (436)
87 PTZ00188 adrenodoxin reductase 99.8 1.2E-18 2.7E-23 163.7 25.3 289 57-370 38-441 (506)
88 KOG1800 Ferredoxin/adrenodoxin 99.8 5.4E-19 1.2E-23 156.5 17.8 286 57-369 19-407 (468)
89 COG1148 HdrA Heterodisulfide r 99.8 4.3E-18 9.4E-23 155.1 23.7 205 160-372 298-548 (622)
90 KOG1346 Programmed cell death 99.8 4.3E-20 9.4E-25 164.9 9.8 297 57-367 177-519 (659)
91 PF07992 Pyr_redox_2: Pyridine 99.8 1.4E-20 2.9E-25 162.0 3.0 182 60-345 1-199 (201)
92 KOG2755 Oxidoreductase [Genera 99.7 5.6E-17 1.2E-21 136.8 9.2 254 60-344 1-321 (334)
93 COG2081 Predicted flavoprotein 99.7 1.2E-14 2.6E-19 131.3 19.4 118 57-174 2-167 (408)
94 PRK05329 anaerobic glycerol-3- 99.6 1.1E-14 2.4E-19 137.3 16.4 155 208-368 218-420 (422)
95 COG4529 Uncharacterized protei 99.5 2.3E-11 5.1E-16 112.9 25.3 174 59-240 2-233 (474)
96 COG1249 Lpd Pyruvate/2-oxoglut 99.4 7.4E-12 1.6E-16 118.8 15.2 136 20-178 135-276 (454)
97 PF03486 HI0933_like: HI0933-l 99.4 2.4E-12 5.3E-17 121.1 11.9 112 59-174 1-166 (409)
98 PRK09897 hypothetical protein; 99.3 2.1E-10 4.5E-15 111.4 21.7 172 59-240 2-247 (534)
99 TIGR00136 gidA glucose-inhibit 99.2 3.7E-09 7.9E-14 102.9 24.0 120 59-178 1-158 (617)
100 TIGR02023 BchP-ChlP geranylger 99.2 2.7E-10 5.9E-15 108.1 13.7 118 59-176 1-157 (388)
101 PLN02463 lycopene beta cyclase 99.2 6E-10 1.3E-14 106.6 15.8 121 57-177 27-172 (447)
102 PRK07251 pyridine nucleotide-d 99.2 9.8E-10 2.1E-14 105.9 17.1 101 57-178 156-257 (438)
103 PRK08275 putative oxidoreducta 99.2 4.5E-09 9.8E-14 104.0 21.7 51 320-371 357-407 (554)
104 PRK04176 ribulose-1,5-biphosph 99.2 4.2E-10 9.1E-15 99.9 12.3 118 54-175 21-174 (257)
105 PRK10015 oxidoreductase; Provi 99.2 3.9E-10 8.5E-15 108.0 13.0 120 57-176 4-166 (429)
106 PLN00093 geranylgeranyl diphos 99.2 7.3E-10 1.6E-14 106.4 14.9 122 55-176 36-201 (450)
107 COG0644 FixC Dehydrogenases (f 99.2 4.1E-10 9E-15 107.0 13.0 120 57-177 2-155 (396)
108 PRK06847 hypothetical protein; 99.1 1.2E-09 2.5E-14 103.3 15.5 119 58-177 4-166 (375)
109 TIGR02032 GG-red-SF geranylger 99.1 4.5E-10 9.6E-15 102.3 11.9 118 59-176 1-150 (295)
110 PRK06912 acoL dihydrolipoamide 99.1 1.8E-09 4E-14 104.5 15.2 101 57-178 169-272 (458)
111 PRK10157 putative oxidoreducta 99.1 1.3E-09 2.9E-14 104.5 14.0 120 57-176 4-166 (428)
112 PRK14694 putative mercuric red 99.1 1.9E-09 4.1E-14 104.7 14.9 129 27-178 146-277 (468)
113 PRK05976 dihydrolipoamide dehy 99.1 3.5E-09 7.7E-14 103.0 16.5 101 57-178 179-285 (472)
114 TIGR00292 thiazole biosynthesi 99.1 1.9E-09 4E-14 95.5 13.1 121 54-174 17-170 (254)
115 PRK06263 sdhA succinate dehydr 99.1 5.5E-09 1.2E-13 103.3 17.8 52 319-371 348-406 (543)
116 PRK06834 hypothetical protein; 99.1 2.3E-09 5E-14 104.3 14.8 124 58-181 3-163 (488)
117 TIGR03378 glycerol3P_GlpB glyc 99.1 3E-08 6.4E-13 92.9 21.4 111 248-364 270-418 (419)
118 PF00070 Pyr_redox: Pyridine n 99.1 8.8E-10 1.9E-14 79.5 8.7 74 207-283 1-79 (80)
119 PRK08773 2-octaprenyl-3-methyl 99.1 1.4E-09 3E-14 103.4 12.6 123 56-178 4-173 (392)
120 PRK14727 putative mercuric red 99.1 3.2E-09 6.8E-14 103.4 14.9 100 57-178 187-287 (479)
121 TIGR01350 lipoamide_DH dihydro 99.1 5E-09 1.1E-13 101.8 16.3 100 57-177 169-272 (461)
122 PRK06854 adenylylsulfate reduc 99.1 8.9E-09 1.9E-13 102.7 18.3 44 326-370 389-433 (608)
123 PRK09231 fumarate reductase fl 99.1 3.6E-09 7.8E-14 105.1 15.1 52 319-371 358-417 (582)
124 PF00070 Pyr_redox: Pyridine n 99.1 3.8E-09 8.3E-14 76.1 11.3 76 60-156 1-77 (80)
125 TIGR01790 carotene-cycl lycope 99.1 2.6E-09 5.6E-14 101.4 13.5 115 60-174 1-141 (388)
126 TIGR02028 ChlP geranylgeranyl 99.0 3.6E-09 7.8E-14 100.5 13.8 120 59-178 1-164 (398)
127 PRK07364 2-octaprenyl-6-methox 99.0 3.5E-09 7.6E-14 101.5 13.7 121 57-177 17-184 (415)
128 PRK07608 ubiquinone biosynthes 99.0 2.9E-09 6.3E-14 101.1 13.0 121 57-177 4-170 (388)
129 TIGR02053 MerA mercuric reduct 99.0 5.2E-09 1.1E-13 101.6 14.9 131 27-179 134-271 (463)
130 PRK07333 2-octaprenyl-6-methox 99.0 2.3E-09 5E-14 102.3 12.2 121 59-179 2-172 (403)
131 PRK06370 mercuric reductase; V 99.0 6.2E-09 1.3E-13 101.1 15.3 129 27-177 139-274 (463)
132 PLN02697 lycopene epsilon cycl 99.0 5.7E-09 1.2E-13 101.5 14.9 117 57-174 107-248 (529)
133 PRK08071 L-aspartate oxidase; 99.0 3.9E-09 8.4E-14 103.3 13.9 32 58-90 3-34 (510)
134 PRK13800 putative oxidoreducta 99.0 4.5E-09 9.7E-14 109.5 15.1 51 319-370 361-411 (897)
135 PF01494 FAD_binding_3: FAD bi 99.0 1.7E-09 3.8E-14 101.0 11.0 120 58-177 1-175 (356)
136 PRK08020 ubiF 2-octaprenyl-3-m 99.0 3.4E-09 7.3E-14 100.8 12.9 120 57-176 4-171 (391)
137 KOG1335 Dihydrolipoamide dehyd 99.0 1.3E-08 2.7E-13 91.4 15.3 137 19-178 172-318 (506)
138 PRK08013 oxidoreductase; Provi 99.0 3E-09 6.5E-14 101.4 12.3 120 58-177 3-171 (400)
139 PRK08010 pyridine nucleotide-d 99.0 6.7E-09 1.5E-13 100.2 14.8 101 57-178 157-258 (441)
140 PRK07818 dihydrolipoamide dehy 99.0 6.4E-09 1.4E-13 101.0 14.6 100 57-177 171-276 (466)
141 PRK05192 tRNA uridine 5-carbox 99.0 5.5E-09 1.2E-13 101.9 13.8 118 57-174 3-157 (618)
142 PRK08244 hypothetical protein; 99.0 4.8E-09 1E-13 102.7 13.6 120 58-177 2-162 (493)
143 PRK06416 dihydrolipoamide dehy 99.0 6.6E-09 1.4E-13 100.9 14.5 101 57-178 171-276 (462)
144 PRK13748 putative mercuric red 99.0 6.1E-09 1.3E-13 103.7 14.4 100 57-178 269-369 (561)
145 TIGR01421 gluta_reduc_1 glutat 99.0 7.1E-09 1.5E-13 100.1 14.4 101 57-178 165-269 (450)
146 PRK05335 tRNA (uracil-5-)-meth 99.0 3.5E-08 7.5E-13 92.3 18.3 50 328-379 324-374 (436)
147 TIGR01438 TGR thioredoxin and 99.0 6.5E-09 1.4E-13 101.1 14.2 100 57-178 179-283 (484)
148 PRK06184 hypothetical protein; 99.0 8.4E-09 1.8E-13 101.2 15.0 120 58-177 3-171 (502)
149 PRK05249 soluble pyridine nucl 99.0 6.5E-09 1.4E-13 101.0 14.0 101 57-178 174-276 (461)
150 PF01266 DAO: FAD dependent ox 99.0 6.1E-09 1.3E-13 97.4 13.3 57 118-174 145-203 (358)
151 PRK05714 2-octaprenyl-3-methyl 99.0 4.2E-09 9.1E-14 100.6 12.4 121 58-178 2-172 (405)
152 COG3075 GlpB Anaerobic glycero 99.0 2.4E-08 5.3E-13 87.9 15.7 117 248-370 265-419 (421)
153 TIGR01176 fum_red_Fp fumarate 99.0 7.5E-09 1.6E-13 102.6 14.3 51 319-370 357-415 (580)
154 TIGR00275 flavoprotein, HI0933 99.0 6.3E-09 1.4E-13 98.8 13.2 113 62-174 1-160 (400)
155 COG0029 NadB Aspartate oxidase 99.0 6.4E-08 1.4E-12 90.2 19.0 114 60-174 9-196 (518)
156 PRK06327 dihydrolipoamide dehy 99.0 1.9E-08 4.1E-13 98.0 16.5 101 57-178 182-288 (475)
157 PRK07846 mycothione reductase; 99.0 1.8E-08 3.9E-13 97.3 16.2 130 27-179 134-267 (451)
158 TIGR01424 gluta_reduc_2 glutat 99.0 1.1E-08 2.3E-13 98.9 14.6 129 27-177 136-266 (446)
159 PLN02507 glutathione reductase 99.0 8.9E-09 1.9E-13 100.5 13.9 130 27-178 173-304 (499)
160 COG1635 THI4 Ribulose 1,5-bisp 99.0 7.9E-09 1.7E-13 86.0 11.2 118 56-173 28-177 (262)
161 PRK07236 hypothetical protein; 99.0 1.1E-08 2.4E-13 97.1 13.9 119 56-176 4-156 (386)
162 PF01134 GIDA: Glucose inhibit 99.0 5.1E-09 1.1E-13 96.9 11.2 113 60-172 1-150 (392)
163 PRK07190 hypothetical protein; 99.0 1.3E-08 2.8E-13 99.1 14.5 118 57-176 4-167 (487)
164 PRK06617 2-octaprenyl-6-methox 99.0 8.1E-09 1.8E-13 97.5 12.5 119 59-177 2-163 (374)
165 PRK06116 glutathione reductase 98.9 1.4E-08 3.1E-13 98.3 14.2 101 57-178 166-269 (450)
166 PRK09126 hypothetical protein; 98.9 1.1E-08 2.3E-13 97.3 12.9 121 58-178 3-171 (392)
167 PRK06115 dihydrolipoamide dehy 98.9 1.9E-08 4.1E-13 97.6 14.7 101 57-178 173-280 (466)
168 COG0654 UbiH 2-polyprenyl-6-me 98.9 1.4E-08 3.1E-13 96.2 13.4 120 58-177 2-165 (387)
169 TIGR01984 UbiH 2-polyprenyl-6- 98.9 8.9E-09 1.9E-13 97.5 11.6 117 60-176 1-164 (382)
170 PRK07494 2-octaprenyl-6-methox 98.9 1.3E-08 2.7E-13 96.7 12.6 122 55-177 4-170 (388)
171 PRK05732 2-octaprenyl-6-methox 98.9 1.2E-08 2.5E-13 97.2 12.4 121 57-177 2-172 (395)
172 PRK06467 dihydrolipoamide dehy 98.9 2E-08 4.4E-13 97.5 14.1 100 57-178 173-278 (471)
173 PRK07845 flavoprotein disulfid 98.9 2.2E-08 4.7E-13 97.2 14.2 101 57-178 176-278 (466)
174 PTZ00052 thioredoxin reductase 98.9 2E-08 4.3E-13 98.2 13.9 100 57-178 181-282 (499)
175 PTZ00058 glutathione reductase 98.9 1.5E-08 3.3E-13 99.6 12.9 129 27-178 208-340 (561)
176 PF01946 Thi4: Thi4 family; PD 98.9 1.6E-08 3.4E-13 84.8 10.9 120 55-174 14-165 (230)
177 TIGR01988 Ubi-OHases Ubiquinon 98.9 1.3E-08 2.9E-13 96.4 12.1 117 60-176 1-165 (385)
178 TIGR01423 trypano_reduc trypan 98.9 2.8E-08 6.1E-13 96.5 14.4 130 27-178 157-292 (486)
179 PRK06126 hypothetical protein; 98.9 2.8E-08 6E-13 98.6 14.7 122 56-177 5-191 (545)
180 PRK06185 hypothetical protein; 98.9 2.4E-08 5.3E-13 95.4 13.8 121 56-176 4-171 (407)
181 PRK08163 salicylate hydroxylas 98.9 1.7E-08 3.6E-13 96.2 12.5 118 58-176 4-168 (396)
182 PRK11445 putative oxidoreducta 98.9 3E-08 6.5E-13 92.7 13.9 117 59-177 2-160 (351)
183 PRK08850 2-octaprenyl-6-methox 98.9 1.7E-08 3.7E-13 96.4 12.4 120 58-177 4-171 (405)
184 PRK06183 mhpA 3-(3-hydroxyphen 98.9 3.1E-08 6.8E-13 98.0 14.5 121 57-177 9-177 (538)
185 PRK08849 2-octaprenyl-3-methyl 98.9 2.2E-08 4.8E-13 94.9 12.9 121 58-178 3-171 (384)
186 PRK07588 hypothetical protein; 98.9 2E-08 4.2E-13 95.5 12.4 118 59-178 1-162 (391)
187 PRK11728 hydroxyglutarate oxid 98.9 3.4E-08 7.4E-13 93.9 13.7 56 119-174 148-204 (393)
188 PRK12842 putative succinate de 98.9 5.7E-09 1.2E-13 103.8 8.5 97 204-305 156-275 (574)
189 PF05834 Lycopene_cycl: Lycope 98.9 2.8E-08 6.1E-13 93.6 12.5 116 60-175 1-143 (374)
190 TIGR01811 sdhA_Bsu succinate d 98.8 5.9E-08 1.3E-12 96.7 15.0 51 319-370 370-427 (603)
191 PRK07045 putative monooxygenas 98.8 5.9E-08 1.3E-12 92.2 14.4 121 57-177 4-168 (388)
192 TIGR03452 mycothione_red mycot 98.8 3.7E-08 8E-13 95.2 13.1 100 57-178 168-269 (452)
193 TIGR01377 soxA_mon sarcosine o 98.8 4.7E-08 1E-12 92.5 13.5 56 119-174 144-200 (380)
194 PRK04965 NADH:flavorubredoxin 98.8 4.2E-08 9.1E-13 92.7 13.1 100 58-177 141-242 (377)
195 PRK09564 coenzyme A disulfide 98.8 4.4E-08 9.5E-13 94.7 13.4 100 58-177 149-249 (444)
196 PRK06753 hypothetical protein; 98.8 4.5E-08 9.8E-13 92.4 13.1 115 59-176 1-154 (373)
197 PRK08132 FAD-dependent oxidore 98.8 7.3E-08 1.6E-12 95.6 15.1 120 56-177 21-188 (547)
198 TIGR02061 aprA adenosine phosp 98.8 3.4E-07 7.4E-12 90.9 19.2 44 328-371 401-445 (614)
199 PRK08401 L-aspartate oxidase; 98.8 8.4E-08 1.8E-12 93.1 14.7 118 59-176 2-177 (466)
200 PRK06996 hypothetical protein; 98.8 4.6E-08 1E-12 93.2 12.5 118 55-172 8-172 (398)
201 PRK11259 solA N-methyltryptoph 98.8 6.6E-08 1.4E-12 91.4 13.4 55 120-174 149-204 (376)
202 PTZ00153 lipoamide dehydrogena 98.8 5.6E-08 1.2E-12 97.0 13.3 101 57-178 311-431 (659)
203 TIGR03329 Phn_aa_oxid putative 98.8 9.1E-08 2E-12 92.8 14.4 55 119-174 182-237 (460)
204 PLN02985 squalene monooxygenas 98.8 8.2E-08 1.8E-12 93.9 14.1 123 55-177 40-211 (514)
205 PF13454 NAD_binding_9: FAD-NA 98.8 1E-07 2.2E-12 78.1 12.5 108 62-172 1-155 (156)
206 PRK09754 phenylpropionate diox 98.8 5.6E-08 1.2E-12 92.5 12.3 99 58-177 144-244 (396)
207 PLN02661 Putative thiazole syn 98.8 1.2E-07 2.6E-12 86.5 13.3 118 55-173 89-243 (357)
208 PLN02546 glutathione reductase 98.8 1.1E-07 2.3E-12 93.7 13.4 130 27-178 222-354 (558)
209 PRK09077 L-aspartate oxidase; 98.8 3.4E-07 7.3E-12 90.4 16.9 50 319-369 353-410 (536)
210 PRK05868 hypothetical protein; 98.8 9.6E-08 2.1E-12 90.0 12.3 117 59-177 2-163 (372)
211 COG1053 SdhA Succinate dehydro 98.8 1.7E-07 3.6E-12 91.8 14.2 57 319-375 355-419 (562)
212 PTZ00383 malate:quinone oxidor 98.8 1.9E-07 4E-12 90.5 14.4 57 118-174 209-273 (497)
213 PRK08243 4-hydroxybenzoate 3-m 98.7 1.6E-07 3.5E-12 89.3 13.9 120 58-177 2-166 (392)
214 COG3380 Predicted NAD/FAD-depe 98.7 3.3E-08 7.1E-13 84.9 8.0 104 59-171 2-157 (331)
215 TIGR03385 CoA_CoA_reduc CoA-di 98.7 1.2E-07 2.7E-12 91.2 13.1 99 58-177 137-236 (427)
216 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 1.9E-06 4.1E-11 81.3 20.6 45 332-378 328-372 (433)
217 PRK06475 salicylate hydroxylas 98.7 1.8E-07 3.9E-12 89.2 13.4 118 59-177 3-170 (400)
218 TIGR01813 flavo_cyto_c flavocy 98.7 2E-07 4.4E-12 89.9 13.7 57 119-175 129-193 (439)
219 PRK06481 fumarate reductase fl 98.7 3.6E-07 7.8E-12 89.6 15.4 118 57-174 60-251 (506)
220 PF12831 FAD_oxidored: FAD dep 98.7 1.1E-08 2.5E-13 98.0 4.7 109 60-172 1-148 (428)
221 PRK13977 myosin-cross-reactive 98.7 5.1E-07 1.1E-11 87.5 15.5 94 214-308 191-296 (576)
222 PRK06292 dihydrolipoamide dehy 98.7 2.6E-07 5.6E-12 89.8 13.8 100 57-178 168-272 (460)
223 PRK07538 hypothetical protein; 98.7 2E-07 4.4E-12 89.2 12.8 117 59-176 1-167 (413)
224 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 2.2E-07 4.8E-12 88.2 12.9 119 58-176 2-165 (390)
225 PRK12409 D-amino acid dehydrog 98.7 4.4E-07 9.5E-12 86.9 14.9 56 119-174 196-258 (410)
226 TIGR01989 COQ6 Ubiquinone bios 98.7 1.6E-07 3.6E-12 90.5 12.0 120 59-178 1-187 (437)
227 COG0445 GidA Flavin-dependent 98.7 4.6E-08 1E-12 92.0 7.4 116 58-173 4-157 (621)
228 PRK13512 coenzyme A disulfide 98.7 1.9E-07 4.1E-12 90.0 12.0 97 58-178 148-245 (438)
229 PRK14989 nitrite reductase sub 98.7 1.7E-07 3.7E-12 96.5 11.9 100 58-177 145-248 (847)
230 PRK04176 ribulose-1,5-biphosph 98.6 7.7E-07 1.7E-11 79.1 14.2 162 205-370 25-256 (257)
231 TIGR03364 HpnW_proposed FAD de 98.6 4.8E-07 1E-11 85.2 13.3 53 118-174 143-197 (365)
232 PF00890 FAD_binding_2: FAD bi 98.6 3.3E-07 7.2E-12 87.9 12.3 58 118-175 139-204 (417)
233 PRK08274 tricarballylate dehyd 98.6 6.3E-07 1.4E-11 87.2 14.2 117 57-173 3-191 (466)
234 KOG0405 Pyridine nucleotide-di 98.6 1.7E-07 3.8E-12 83.2 9.0 138 19-179 152-292 (478)
235 TIGR03219 salicylate_mono sali 98.6 4.6E-07 9.9E-12 86.9 12.4 114 59-175 1-160 (414)
236 PRK07843 3-ketosteroid-delta-1 98.6 1.8E-07 4E-12 92.6 9.9 101 204-309 159-274 (557)
237 TIGR01789 lycopene_cycl lycope 98.6 3.5E-07 7.5E-12 86.0 11.2 106 60-175 1-139 (370)
238 PRK13369 glycerol-3-phosphate 98.6 4.1E-07 8.9E-12 89.2 12.2 55 120-174 155-215 (502)
239 COG0446 HcaD Uncharacterized N 98.6 4.9E-07 1.1E-11 86.4 12.0 99 58-176 136-239 (415)
240 PRK12266 glpD glycerol-3-phosp 98.6 9.2E-07 2E-11 86.7 14.1 33 57-89 5-37 (508)
241 COG0579 Predicted dehydrogenas 98.6 1.1E-06 2.5E-11 82.4 13.8 57 118-174 151-211 (429)
242 TIGR02374 nitri_red_nirB nitri 98.6 4.3E-07 9.4E-12 93.4 12.1 100 58-177 140-241 (785)
243 PRK07121 hypothetical protein; 98.6 1E-06 2.3E-11 86.2 14.3 34 57-90 19-52 (492)
244 PRK07804 L-aspartate oxidase; 98.6 1.1E-06 2.5E-11 86.7 14.6 118 57-174 15-210 (541)
245 TIGR00551 nadB L-aspartate oxi 98.6 8.4E-07 1.8E-11 86.7 13.5 58 118-175 126-190 (488)
246 COG1252 Ndh NADH dehydrogenase 98.6 3.2E-07 6.9E-12 85.5 9.9 96 59-177 156-265 (405)
247 PRK11101 glpA sn-glycerol-3-ph 98.6 9.8E-07 2.1E-11 87.3 13.8 33 57-89 5-37 (546)
248 PRK01747 mnmC bifunctional tRN 98.6 7.8E-07 1.7E-11 90.2 13.3 55 119-174 407-463 (662)
249 TIGR00292 thiazole biosynthesi 98.6 1.4E-06 2.9E-11 77.3 13.2 161 205-368 21-253 (254)
250 PF04820 Trp_halogenase: Trypt 98.6 4.9E-07 1.1E-11 87.1 11.2 60 117-176 151-213 (454)
251 TIGR01373 soxB sarcosine oxida 98.6 2E-06 4.3E-11 82.3 15.3 55 120-174 183-240 (407)
252 PRK05945 sdhA succinate dehydr 98.6 1E-06 2.2E-11 87.7 13.7 58 118-175 133-198 (575)
253 PRK06175 L-aspartate oxidase; 98.6 9E-07 1.9E-11 85.0 12.8 50 319-369 331-388 (433)
254 PRK00711 D-amino acid dehydrog 98.5 1.4E-06 3E-11 83.5 13.8 56 119-174 200-257 (416)
255 PRK10262 thioredoxin reductase 98.5 9.5E-07 2.1E-11 81.6 12.0 98 57-177 145-251 (321)
256 PRK08294 phenol 2-monooxygenas 98.5 1.8E-06 4E-11 86.7 14.8 121 57-178 31-214 (634)
257 KOG2415 Electron transfer flav 98.5 5.1E-07 1.1E-11 82.1 9.1 115 56-174 74-256 (621)
258 PLN02661 Putative thiazole syn 98.5 5.2E-06 1.1E-10 76.0 15.5 165 204-372 91-331 (357)
259 PTZ00367 squalene epoxidase; P 98.5 9.3E-07 2E-11 87.1 11.4 35 57-91 32-66 (567)
260 PRK06452 sdhA succinate dehydr 98.5 2.6E-06 5.7E-11 84.6 14.5 51 319-370 346-405 (566)
261 COG1635 THI4 Ribulose 1,5-bisp 98.5 4.2E-06 9E-11 70.1 13.0 162 205-370 30-261 (262)
262 PRK06069 sdhA succinate dehydr 98.5 2.2E-06 4.7E-11 85.5 13.8 51 319-370 352-416 (577)
263 PRK07803 sdhA succinate dehydr 98.5 2.4E-06 5.3E-11 85.7 14.2 52 319-370 391-449 (626)
264 TIGR01812 sdhA_frdA_Gneg succi 98.5 2.5E-06 5.3E-11 85.1 14.1 51 319-370 342-404 (566)
265 PLN00128 Succinate dehydrogena 98.5 3.7E-06 8E-11 84.3 15.2 34 57-90 49-82 (635)
266 PRK06134 putative FAD-binding 98.5 5E-06 1.1E-10 82.9 15.8 35 56-90 10-44 (581)
267 PRK13339 malate:quinone oxidor 98.5 4E-06 8.6E-11 81.2 14.5 57 118-174 182-247 (497)
268 KOG2820 FAD-dependent oxidored 98.5 2E-06 4.4E-11 76.4 11.3 56 118-173 151-211 (399)
269 COG0665 DadA Glycine/D-amino a 98.5 3.4E-06 7.4E-11 80.0 13.9 57 118-174 154-212 (387)
270 PTZ00139 Succinate dehydrogena 98.4 4.6E-06 1E-10 83.6 14.6 34 57-90 28-61 (617)
271 PLN02815 L-aspartate oxidase 98.4 4.4E-06 9.4E-11 83.1 14.1 50 319-369 377-434 (594)
272 PF13450 NAD_binding_8: NAD(P) 98.4 3.7E-07 8E-12 63.2 4.6 37 63-103 1-37 (68)
273 KOG1336 Monodehydroascorbate/f 98.4 1.7E-06 3.7E-11 80.5 10.1 103 58-180 213-319 (478)
274 PTZ00318 NADH dehydrogenase-li 98.4 2.8E-06 6.1E-11 81.5 12.2 93 59-175 174-281 (424)
275 PRK08626 fumarate reductase fl 98.4 5.8E-06 1.3E-10 83.3 14.6 51 319-370 372-431 (657)
276 PLN02927 antheraxanthin epoxid 98.4 3.4E-06 7.4E-11 84.0 12.6 118 56-176 79-250 (668)
277 TIGR02462 pyranose_ox pyranose 98.4 1.1E-05 2.4E-10 78.8 15.8 61 251-311 224-285 (544)
278 PRK08255 salicylyl-CoA 5-hydro 98.4 8.3E-07 1.8E-11 91.2 8.3 106 59-176 1-143 (765)
279 PRK09078 sdhA succinate dehydr 98.4 7.7E-06 1.7E-10 81.8 14.9 34 57-90 11-44 (598)
280 PRK07573 sdhA succinate dehydr 98.4 7.6E-06 1.7E-10 82.3 14.3 33 57-89 34-66 (640)
281 KOG1298 Squalene monooxygenase 98.4 1.4E-06 3.1E-11 78.6 7.7 119 56-174 43-208 (509)
282 PRK07057 sdhA succinate dehydr 98.3 1.1E-05 2.3E-10 80.7 14.9 35 56-90 10-44 (591)
283 PRK08958 sdhA succinate dehydr 98.3 1.2E-05 2.5E-10 80.2 14.3 34 57-90 6-39 (588)
284 PRK08641 sdhA succinate dehydr 98.3 1.1E-05 2.4E-10 80.5 14.2 51 319-370 355-412 (589)
285 KOG2311 NAD/FAD-utilizing prot 98.3 2E-06 4.3E-11 79.7 8.0 118 56-173 26-185 (679)
286 KOG0029 Amine oxidase [Seconda 98.3 9.5E-07 2.1E-11 85.4 6.3 46 56-105 13-58 (501)
287 PRK07395 L-aspartate oxidase; 98.3 5.5E-06 1.2E-10 81.9 11.7 33 57-90 8-40 (553)
288 COG2081 Predicted flavoprotein 98.3 4.4E-06 9.6E-11 76.4 10.0 93 206-307 4-169 (408)
289 TIGR01292 TRX_reduct thioredox 98.3 4.6E-06 9.9E-11 76.1 10.3 95 207-311 2-118 (300)
290 PLN02464 glycerol-3-phosphate 98.3 8.1E-06 1.8E-10 81.9 12.7 33 57-89 70-102 (627)
291 PRK12845 3-ketosteroid-delta-1 98.3 1.7E-05 3.8E-10 78.5 14.8 32 57-89 15-46 (564)
292 PRK08205 sdhA succinate dehydr 98.3 1.9E-05 4.2E-10 78.8 14.6 57 118-174 138-206 (583)
293 TIGR01320 mal_quin_oxido malat 98.3 1.2E-05 2.7E-10 78.1 12.9 57 118-174 176-240 (483)
294 PRK12843 putative FAD-binding 98.3 2E-05 4.4E-10 78.6 14.7 33 57-89 15-47 (578)
295 PRK07512 L-aspartate oxidase; 98.3 9.8E-06 2.1E-10 79.6 12.2 51 319-370 341-399 (513)
296 COG1231 Monoamine oxidase [Ami 98.2 3.5E-05 7.6E-10 71.8 14.3 46 56-105 5-50 (450)
297 TIGR03140 AhpF alkyl hydropero 98.2 8E-06 1.7E-10 80.4 10.9 95 58-179 352-455 (515)
298 TIGR03169 Nterm_to_SelD pyridi 98.2 1.5E-05 3.2E-10 75.0 12.0 94 58-176 145-245 (364)
299 PRK05257 malate:quinone oxidor 98.2 2.8E-05 6E-10 75.8 13.8 34 57-90 4-39 (494)
300 PRK12844 3-ketosteroid-delta-1 98.2 3.1E-05 6.7E-10 76.8 14.0 34 57-90 5-38 (557)
301 PRK12835 3-ketosteroid-delta-1 98.2 3.5E-05 7.6E-10 76.8 14.3 34 57-90 10-43 (584)
302 PRK12839 hypothetical protein; 98.2 5E-05 1.1E-09 75.5 15.1 34 57-90 7-40 (572)
303 COG0578 GlpA Glycerol-3-phosph 98.2 2.3E-05 5.1E-10 75.3 12.0 33 57-89 11-43 (532)
304 KOG2495 NADH-dehydrogenase (ub 98.1 4E-06 8.7E-11 76.8 6.2 97 58-177 218-332 (491)
305 PRK12770 putative glutamate sy 98.1 1.4E-05 3.1E-10 74.8 10.2 95 58-177 172-289 (352)
306 PRK12837 3-ketosteroid-delta-1 98.1 4.5E-05 9.7E-10 75.1 14.0 33 57-90 6-38 (513)
307 PTZ00306 NADH-dependent fumara 98.1 4.9E-05 1.1E-09 81.7 14.5 36 55-90 406-441 (1167)
308 KOG4716 Thioredoxin reductase 98.1 1E-05 2.3E-10 71.9 7.2 129 27-178 167-304 (503)
309 PF07992 Pyr_redox_2: Pyridine 98.1 8.4E-06 1.8E-10 69.7 6.6 104 207-311 1-128 (201)
310 PF13738 Pyr_redox_3: Pyridine 98.1 2.2E-05 4.8E-10 67.3 9.2 92 209-308 1-143 (203)
311 PRK11749 dihydropyrimidine deh 98.1 5.2E-05 1.1E-09 73.6 12.7 95 57-176 272-389 (457)
312 PRK07208 hypothetical protein; 98.1 1.1E-05 2.4E-10 78.9 8.0 43 57-103 3-45 (479)
313 COG1233 Phytoene dehydrogenase 98.0 5.6E-06 1.2E-10 80.7 5.3 43 57-103 2-44 (487)
314 COG3349 Uncharacterized conser 98.0 6.1E-06 1.3E-10 78.1 5.1 44 59-106 1-44 (485)
315 PF03486 HI0933_like: HI0933-l 98.0 3.2E-05 6.9E-10 73.3 10.0 94 207-307 2-168 (409)
316 TIGR01316 gltA glutamate synth 98.0 3.4E-05 7.4E-10 74.6 10.3 95 58-177 272-390 (449)
317 PRK15317 alkyl hydroperoxide r 98.0 3.8E-05 8.2E-10 75.7 10.4 95 58-179 351-454 (517)
318 PRK11883 protoporphyrinogen ox 98.0 7.8E-06 1.7E-10 79.2 5.5 42 59-104 1-44 (451)
319 TIGR02485 CobZ_N-term precorri 98.0 7.8E-05 1.7E-09 71.9 12.3 56 119-174 122-183 (432)
320 PLN02268 probable polyamine ox 98.0 9.5E-06 2.1E-10 78.3 5.5 42 59-104 1-42 (435)
321 PRK01438 murD UDP-N-acetylmura 98.0 2.8E-05 6.1E-10 76.0 8.8 80 58-179 16-95 (480)
322 PF06039 Mqo: Malate:quinone o 98.0 0.0002 4.4E-09 67.1 13.6 55 119-173 180-243 (488)
323 PRK12810 gltD glutamate syntha 97.9 6.7E-05 1.5E-09 73.1 10.8 105 57-176 280-402 (471)
324 KOG2614 Kynurenine 3-monooxyge 97.9 5.3E-05 1.1E-09 69.6 9.2 32 58-89 2-33 (420)
325 PLN02576 protoporphyrinogen ox 97.9 1.9E-05 4E-10 77.6 6.4 44 57-104 11-55 (496)
326 PRK12831 putative oxidoreducta 97.9 0.00013 2.9E-09 70.8 11.9 96 57-177 280-399 (464)
327 COG2907 Predicted NAD/FAD-bind 97.9 7.1E-05 1.5E-09 67.0 8.9 42 57-103 7-48 (447)
328 PRK07233 hypothetical protein; 97.9 1.7E-05 3.6E-10 76.5 5.5 40 60-103 1-40 (434)
329 PRK06847 hypothetical protein; 97.9 0.00011 2.4E-09 69.4 11.0 95 205-307 4-165 (375)
330 TIGR00562 proto_IX_ox protopor 97.9 1.7E-05 3.7E-10 77.1 5.5 43 58-104 2-48 (462)
331 COG2509 Uncharacterized FAD-de 97.9 0.00027 5.9E-09 65.8 12.4 47 321-369 438-484 (486)
332 COG0562 Glf UDP-galactopyranos 97.8 4.6E-05 9.9E-10 67.6 6.9 71 59-133 2-78 (374)
333 TIGR03143 AhpF_homolog putativ 97.8 0.00011 2.4E-09 73.0 10.5 96 57-178 142-250 (555)
334 PF00743 FMO-like: Flavin-bind 97.8 0.00013 2.8E-09 71.7 10.8 100 205-304 1-149 (531)
335 KOG2853 Possible oxidoreductas 97.8 0.0002 4.4E-09 64.0 10.6 34 57-90 85-122 (509)
336 TIGR02733 desat_CrtD C-3',4' d 97.8 2.4E-05 5.2E-10 76.8 5.3 41 59-103 2-42 (492)
337 COG1232 HemY Protoporphyrinoge 97.8 2.6E-05 5.7E-10 73.9 5.3 42 59-104 1-44 (444)
338 TIGR00031 UDP-GALP_mutase UDP- 97.8 2.8E-05 6.1E-10 72.7 5.3 41 59-103 2-42 (377)
339 PLN02172 flavin-containing mon 97.8 0.00056 1.2E-08 66.2 14.4 134 204-344 9-215 (461)
340 COG3573 Predicted oxidoreducta 97.8 0.00034 7.4E-09 62.4 11.3 34 57-90 4-37 (552)
341 PRK08163 salicylate hydroxylas 97.8 0.00022 4.8E-09 67.9 11.1 36 205-240 4-39 (396)
342 KOG1346 Programmed cell death 97.8 7.2E-05 1.6E-09 68.4 7.1 99 58-177 347-452 (659)
343 PRK07364 2-octaprenyl-6-methox 97.8 0.00033 7.2E-09 67.1 12.3 97 205-306 18-182 (415)
344 PRK12416 protoporphyrinogen ox 97.8 3.2E-05 6.9E-10 75.3 5.3 42 59-104 2-49 (463)
345 PLN02568 polyamine oxidase 97.8 3.7E-05 8.1E-10 75.7 5.7 43 57-103 4-51 (539)
346 KOG2852 Possible oxidoreductas 97.8 0.00018 3.8E-09 62.9 9.0 33 57-89 9-47 (380)
347 PF01494 FAD_binding_3: FAD bi 97.8 0.00023 5E-09 66.4 10.8 97 207-306 3-173 (356)
348 PF01134 GIDA: Glucose inhibit 97.8 0.00015 3.3E-09 67.6 9.2 89 207-303 1-150 (392)
349 KOG2844 Dimethylglycine dehydr 97.7 0.00026 5.7E-09 68.6 10.8 58 117-174 184-243 (856)
350 PRK06834 hypothetical protein; 97.7 0.00026 5.7E-09 69.1 11.1 93 206-306 4-157 (488)
351 TIGR02734 crtI_fam phytoene de 97.7 3.6E-05 7.8E-10 75.7 5.0 39 61-103 1-39 (502)
352 PF01946 Thi4: Thi4 family; PD 97.7 0.00074 1.6E-08 57.1 11.8 101 205-307 17-167 (230)
353 TIGR02730 carot_isom carotene 97.7 4.9E-05 1.1E-09 74.5 5.6 41 59-103 1-41 (493)
354 TIGR02731 phytoene_desat phyto 97.7 5.2E-05 1.1E-09 73.6 5.3 40 60-103 1-40 (453)
355 PRK08244 hypothetical protein; 97.7 0.00033 7.3E-09 68.7 11.0 96 206-306 3-160 (493)
356 KOG2404 Fumarate reductase, fl 97.7 0.00056 1.2E-08 60.8 10.9 30 60-89 11-40 (477)
357 TIGR01372 soxA sarcosine oxida 97.7 0.00032 6.9E-09 74.4 11.4 91 58-177 317-414 (985)
358 PRK06184 hypothetical protein; 97.7 0.00039 8.4E-09 68.4 11.3 95 206-305 4-168 (502)
359 PRK12778 putative bifunctional 97.7 0.0018 3.8E-08 67.0 16.2 95 58-177 570-689 (752)
360 PRK12814 putative NADPH-depend 97.6 0.00055 1.2E-08 69.3 12.2 96 57-177 322-440 (652)
361 PLN02852 ferredoxin-NADP+ redu 97.6 0.0001 2.2E-09 71.3 6.6 88 202-306 23-127 (491)
362 PRK09126 hypothetical protein; 97.6 0.00047 1E-08 65.5 11.2 94 206-307 4-169 (392)
363 PLN02529 lysine-specific histo 97.6 8.8E-05 1.9E-09 75.0 5.9 42 57-102 159-200 (738)
364 PRK06475 salicylate hydroxylas 97.6 0.00053 1.2E-08 65.4 11.0 35 206-240 3-37 (400)
365 PRK09853 putative selenate red 97.6 0.00028 6.1E-09 73.3 9.3 86 203-306 537-636 (1019)
366 PLN02676 polyamine oxidase 97.6 9.6E-05 2.1E-09 72.1 5.6 43 57-103 25-68 (487)
367 PRK08773 2-octaprenyl-3-methyl 97.6 0.00063 1.4E-08 64.7 11.1 34 205-238 6-39 (392)
368 KOG0685 Flavin-containing amin 97.6 0.00011 2.3E-09 68.7 5.2 43 57-103 20-63 (498)
369 TIGR02032 GG-red-SF geranylger 97.6 0.00087 1.9E-08 60.8 11.3 91 207-305 2-148 (295)
370 COG1206 Gid NAD(FAD)-utilizing 97.6 0.00027 5.9E-09 62.9 7.3 50 329-380 330-379 (439)
371 PF01266 DAO: FAD dependent ox 97.5 0.00059 1.3E-08 63.6 10.3 31 207-237 1-31 (358)
372 PRK05868 hypothetical protein; 97.5 0.0008 1.7E-08 63.5 11.1 93 206-307 2-162 (372)
373 PRK06126 hypothetical protein; 97.5 0.0013 2.8E-08 65.5 12.8 99 205-306 7-189 (545)
374 COG1251 NirB NAD(P)H-nitrite r 97.5 0.00018 3.9E-09 70.7 6.4 99 58-177 145-246 (793)
375 PRK07236 hypothetical protein; 97.5 0.0007 1.5E-08 64.3 10.5 94 205-306 6-155 (386)
376 PRK08132 FAD-dependent oxidore 97.5 0.0015 3.3E-08 65.0 13.2 98 205-307 23-187 (547)
377 COG0493 GltD NADPH-dependent g 97.5 0.00012 2.6E-09 70.1 5.1 197 58-305 5-220 (457)
378 PRK06183 mhpA 3-(3-hydroxyphen 97.5 0.001 2.2E-08 66.1 11.7 98 205-306 10-175 (538)
379 PRK12779 putative bifunctional 97.5 0.00023 5E-09 74.6 7.4 88 204-307 305-407 (944)
380 PLN02328 lysine-specific histo 97.5 0.00014 3E-09 74.1 5.6 43 57-103 237-279 (808)
381 COG3634 AhpF Alkyl hydroperoxi 97.5 0.003 6.5E-08 56.9 13.1 112 45-183 341-461 (520)
382 PTZ00188 adrenodoxin reductase 97.5 0.00048 1E-08 66.0 8.7 86 204-306 38-139 (506)
383 TIGR01318 gltD_gamma_fam gluta 97.5 0.0016 3.5E-08 63.3 12.5 94 58-176 282-400 (467)
384 TIGR02732 zeta_caro_desat caro 97.5 0.00016 3.5E-09 70.4 5.4 40 60-103 1-40 (474)
385 PRK06753 hypothetical protein; 97.5 0.00085 1.9E-08 63.3 10.2 34 207-240 2-35 (373)
386 PRK06185 hypothetical protein; 97.5 0.0016 3.5E-08 62.3 12.1 97 205-305 6-169 (407)
387 TIGR01984 UbiH 2-polyprenyl-6- 97.4 0.0012 2.7E-08 62.4 11.1 32 207-238 1-33 (382)
388 PRK07588 hypothetical protein; 97.4 0.0012 2.6E-08 62.8 10.9 34 207-240 2-35 (391)
389 PRK07190 hypothetical protein; 97.4 0.001 2.2E-08 65.0 10.4 92 206-305 6-165 (487)
390 PRK12834 putative FAD-binding 97.4 0.00021 4.5E-09 71.1 5.7 35 57-91 3-37 (549)
391 KOG1399 Flavin-containing mono 97.4 0.0022 4.8E-08 61.3 12.3 136 204-344 5-197 (448)
392 PF13434 K_oxygenase: L-lysine 97.4 0.00028 6.1E-09 65.4 6.2 116 56-172 188-339 (341)
393 COG0492 TrxB Thioredoxin reduc 97.4 0.0025 5.5E-08 57.9 12.2 125 206-343 4-153 (305)
394 PRK07333 2-octaprenyl-6-methox 97.4 0.0012 2.7E-08 62.9 10.7 92 207-306 3-168 (403)
395 KOG0042 Glycerol-3-phosphate d 97.4 0.0003 6.4E-09 66.7 6.1 92 215-307 196-289 (680)
396 PRK07045 putative monooxygenas 97.4 0.0015 3.2E-08 62.0 11.1 94 206-305 6-165 (388)
397 PLN02463 lycopene beta cyclase 97.4 0.0013 2.9E-08 63.3 10.4 91 206-306 29-170 (447)
398 PLN02487 zeta-carotene desatur 97.4 0.00029 6.3E-09 69.6 5.9 42 57-102 74-115 (569)
399 KOG1276 Protoporphyrinogen oxi 97.4 0.00025 5.5E-09 65.4 5.1 43 57-103 10-54 (491)
400 PRK12769 putative oxidoreducta 97.4 0.0023 4.9E-08 65.1 12.5 94 58-176 468-586 (654)
401 COG0654 UbiH 2-polyprenyl-6-me 97.4 0.0018 3.9E-08 61.5 11.1 93 206-305 3-162 (387)
402 PRK05714 2-octaprenyl-3-methyl 97.3 0.0019 4.2E-08 61.7 11.1 33 206-238 3-35 (405)
403 PLN02612 phytoene desaturase 97.3 0.00029 6.2E-09 70.2 5.5 43 57-103 92-134 (567)
404 TIGR01988 Ubi-OHases Ubiquinon 97.3 0.0021 4.4E-08 60.9 11.2 33 207-239 1-33 (385)
405 PRK08013 oxidoreductase; Provi 97.3 0.0021 4.6E-08 61.3 11.2 34 206-239 4-37 (400)
406 PF12831 FAD_oxidored: FAD dep 97.3 0.00022 4.8E-09 68.6 4.3 93 207-303 1-148 (428)
407 PF00732 GMC_oxred_N: GMC oxid 97.3 0.00021 4.5E-09 65.2 3.8 70 245-314 197-268 (296)
408 PRK14106 murD UDP-N-acetylmura 97.3 0.001 2.2E-08 64.5 8.8 81 57-178 4-84 (450)
409 PRK07494 2-octaprenyl-6-methox 97.3 0.0032 7E-08 59.8 11.8 35 205-239 7-41 (388)
410 PRK08849 2-octaprenyl-3-methyl 97.3 0.0023 5E-08 60.7 10.8 33 206-238 4-36 (384)
411 PRK01438 murD UDP-N-acetylmura 97.3 0.00084 1.8E-08 65.7 7.9 83 203-311 14-96 (480)
412 PRK08020 ubiF 2-octaprenyl-3-m 97.2 0.0035 7.5E-08 59.6 11.6 34 205-238 5-38 (391)
413 PRK10157 putative oxidoreducta 97.2 0.003 6.6E-08 60.8 11.1 34 206-239 6-39 (428)
414 PRK08850 2-octaprenyl-6-methox 97.2 0.003 6.5E-08 60.4 11.0 32 206-237 5-36 (405)
415 PLN03000 amine oxidase 97.2 0.00044 9.5E-09 70.7 5.4 43 57-103 183-225 (881)
416 PTZ00363 rab-GDP dissociation 97.2 0.00035 7.6E-09 67.0 4.6 43 57-103 3-45 (443)
417 PRK05732 2-octaprenyl-6-methox 97.2 0.0033 7.2E-08 59.8 11.3 32 206-237 4-38 (395)
418 PRK06617 2-octaprenyl-6-methox 97.2 0.0033 7.1E-08 59.4 11.1 31 207-237 3-33 (374)
419 PRK05329 anaerobic glycerol-3- 97.2 0.0026 5.7E-08 60.6 10.3 89 62-173 219-317 (422)
420 PRK07608 ubiquinone biosynthes 97.2 0.0036 7.8E-08 59.4 11.3 34 206-239 6-39 (388)
421 TIGR03315 Se_ygfK putative sel 97.2 0.0039 8.5E-08 65.3 12.1 94 57-177 665-779 (1012)
422 PRK13984 putative oxidoreducta 97.2 0.0036 7.9E-08 63.1 11.7 98 58-179 418-543 (604)
423 TIGR01317 GOGAT_sm_gam glutama 97.2 0.00066 1.4E-08 66.3 6.1 86 204-306 142-242 (485)
424 COG2072 TrkA Predicted flavopr 97.1 0.0047 1E-07 59.6 11.4 135 204-344 7-186 (443)
425 PRK07538 hypothetical protein; 97.1 0.0045 9.7E-08 59.3 11.1 34 207-240 2-35 (413)
426 PRK11101 glpA sn-glycerol-3-ph 97.1 0.0058 1.3E-07 60.7 11.9 52 252-305 160-211 (546)
427 PRK08243 4-hydroxybenzoate 3-m 97.1 0.0052 1.1E-07 58.5 11.2 96 206-306 3-164 (392)
428 COG0579 Predicted dehydrogenas 97.1 0.0054 1.2E-07 58.1 10.9 35 206-240 4-40 (429)
429 PRK05192 tRNA uridine 5-carbox 97.1 0.0039 8.4E-08 61.7 10.3 32 206-237 5-36 (618)
430 PRK10015 oxidoreductase; Provi 97.1 0.005 1.1E-07 59.2 11.0 34 206-239 6-39 (429)
431 KOG2665 Predicted FAD-dependen 97.0 0.0025 5.4E-08 56.7 7.6 34 57-90 47-82 (453)
432 PRK12775 putative trifunctiona 97.0 0.0036 7.8E-08 66.4 10.1 96 57-177 570-689 (1006)
433 PF04820 Trp_halogenase: Trypt 97.0 0.004 8.6E-08 60.3 9.6 34 207-240 1-37 (454)
434 TIGR03862 flavo_PP4765 unchara 97.0 0.011 2.5E-07 55.2 12.2 60 113-174 79-141 (376)
435 PLN02976 amine oxidase 97.0 0.0011 2.4E-08 70.6 5.9 43 57-103 692-734 (1713)
436 PRK09897 hypothetical protein; 97.0 0.0079 1.7E-07 59.1 11.4 35 206-240 2-38 (534)
437 PRK11445 putative oxidoreducta 97.0 0.0087 1.9E-07 56.0 11.2 93 207-305 3-157 (351)
438 PRK12809 putative oxidoreducta 96.9 0.012 2.6E-07 59.7 12.8 95 57-176 450-569 (639)
439 COG0644 FixC Dehydrogenases (f 96.9 0.0082 1.8E-07 57.2 11.0 92 206-305 4-152 (396)
440 TIGR03219 salicylate_mono sali 96.9 0.0077 1.7E-07 57.7 10.9 34 207-240 2-36 (414)
441 PRK11728 hydroxyglutarate oxid 96.9 0.008 1.7E-07 57.2 10.8 33 206-238 3-37 (393)
442 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.0019 4E-08 61.3 6.2 33 207-239 2-34 (433)
443 TIGR01789 lycopene_cycl lycope 96.9 0.0052 1.1E-07 57.9 9.3 34 207-240 1-36 (370)
444 PRK02106 choline dehydrogenase 96.9 0.00096 2.1E-08 66.6 4.5 34 57-90 4-38 (560)
445 TIGR01790 carotene-cycl lycope 96.9 0.0075 1.6E-07 57.2 10.5 33 207-239 1-33 (388)
446 PRK06996 hypothetical protein; 96.9 0.011 2.3E-07 56.4 11.3 94 205-303 11-172 (398)
447 PF06039 Mqo: Malate:quinone o 96.9 0.01 2.2E-07 56.0 10.5 61 252-314 193-253 (488)
448 PF05834 Lycopene_cycl: Lycope 96.8 0.0095 2.1E-07 56.3 10.5 89 207-305 1-142 (374)
449 TIGR02023 BchP-ChlP geranylger 96.8 0.01 2.2E-07 56.3 10.7 31 207-237 2-32 (388)
450 TIGR02028 ChlP geranylgeranyl 96.8 0.012 2.6E-07 56.1 11.1 33 207-239 2-34 (398)
451 PF06100 Strep_67kDa_ant: Stre 96.8 0.009 2E-07 56.9 9.7 89 215-306 173-275 (500)
452 PRK12771 putative glutamate sy 96.8 0.0023 4.9E-08 64.0 6.1 85 203-306 135-235 (564)
453 PRK06481 fumarate reductase fl 96.8 0.017 3.7E-07 56.8 12.0 35 205-239 61-95 (506)
454 KOG3923 D-aspartate oxidase [A 96.8 0.0064 1.4E-07 53.7 7.8 49 118-176 149-197 (342)
455 TIGR01813 flavo_cyto_c flavocy 96.8 0.019 4.1E-07 55.5 12.1 50 253-304 142-191 (439)
456 PF00890 FAD_binding_2: FAD bi 96.8 0.014 3.1E-07 56.0 11.2 54 251-306 151-204 (417)
457 PRK02705 murD UDP-N-acetylmura 96.7 0.0038 8.3E-08 60.7 6.8 30 60-89 2-31 (459)
458 TIGR01470 cysG_Nterm siroheme 96.7 0.0024 5.1E-08 54.7 4.6 32 57-88 8-39 (205)
459 TIGR01377 soxA_mon sarcosine o 96.7 0.017 3.6E-07 54.7 10.8 32 207-238 2-33 (380)
460 PLN02985 squalene monooxygenas 96.7 0.025 5.4E-07 55.7 12.1 34 205-238 43-76 (514)
461 PRK11259 solA N-methyltryptoph 96.7 0.016 3.4E-07 54.7 10.5 33 206-238 4-36 (376)
462 PLN02697 lycopene epsilon cycl 96.7 0.014 3E-07 57.5 10.2 91 206-305 109-248 (529)
463 KOG0399 Glutamate synthase [Am 96.6 0.0039 8.5E-08 64.1 6.4 87 202-305 1782-1882(2142)
464 COG1148 HdrA Heterodisulfide r 96.6 0.0073 1.6E-07 56.9 7.6 69 205-273 124-210 (622)
465 TIGR00275 flavoprotein, HI0933 96.6 0.011 2.3E-07 56.4 9.2 46 251-305 115-160 (400)
466 KOG2311 NAD/FAD-utilizing prot 96.6 0.01 2.3E-07 55.7 8.5 95 205-304 28-185 (679)
467 PRK01747 mnmC bifunctional tRN 96.6 0.018 4E-07 58.7 10.9 33 206-238 261-293 (662)
468 PRK06567 putative bifunctional 96.5 0.0078 1.7E-07 62.4 7.6 36 203-238 381-416 (1028)
469 PF13454 NAD_binding_9: FAD-NA 96.5 0.027 5.8E-07 46.0 9.5 30 209-238 1-35 (156)
470 TIGR01811 sdhA_Bsu succinate d 96.5 0.034 7.4E-07 55.9 11.9 50 254-304 146-195 (603)
471 COG0445 GidA Flavin-dependent 96.4 0.0085 1.9E-07 57.4 6.8 92 206-304 5-157 (621)
472 KOG2960 Protein involved in th 96.4 0.0008 1.7E-08 56.2 -0.0 33 57-89 75-109 (328)
473 PLN02815 L-aspartate oxidase 96.4 0.034 7.4E-07 55.7 11.1 51 254-304 169-221 (594)
474 COG2303 BetA Choline dehydroge 96.3 0.0033 7.2E-08 62.2 3.8 33 57-89 6-38 (542)
475 TIGR00136 gidA glucose-inhibit 96.3 0.033 7E-07 55.2 10.4 42 333-376 357-398 (617)
476 TIGR03378 glycerol3P_GlpB glyc 96.3 0.029 6.3E-07 53.2 9.7 68 108-175 251-324 (419)
477 PRK08294 phenol 2-monooxygenas 96.3 0.049 1.1E-06 55.1 12.0 36 205-240 32-68 (634)
478 TIGR01810 betA choline dehydro 96.3 0.0033 7.1E-08 62.4 3.6 31 60-90 1-32 (532)
479 KOG2404 Fumarate reductase, fl 96.3 0.028 6.1E-07 50.3 8.6 47 256-305 160-206 (477)
480 TIGR02360 pbenz_hydroxyl 4-hyd 96.2 0.043 9.4E-07 52.1 10.8 34 206-239 3-36 (390)
481 PF13450 NAD_binding_8: NAD(P) 96.2 0.0086 1.9E-07 41.2 4.4 32 210-241 1-32 (68)
482 PLN00093 geranylgeranyl diphos 96.2 0.045 9.7E-07 53.0 10.9 34 205-238 39-72 (450)
483 TIGR01812 sdhA_frdA_Gneg succi 96.2 0.064 1.4E-06 53.7 12.0 51 253-305 141-191 (566)
484 PRK07573 sdhA succinate dehydr 96.2 0.064 1.4E-06 54.3 12.0 50 252-303 181-230 (640)
485 PRK08274 tricarballylate dehyd 96.1 0.074 1.6E-06 51.9 11.7 33 206-238 5-37 (466)
486 PRK06718 precorrin-2 dehydroge 96.1 0.014 3.1E-07 49.8 5.9 33 56-88 8-40 (202)
487 TIGR01989 COQ6 Ubiquinone bios 96.1 0.059 1.3E-06 52.1 10.9 31 207-237 2-36 (437)
488 PLN02785 Protein HOTHEAD 96.0 0.0069 1.5E-07 60.5 4.3 33 57-90 54-86 (587)
489 PRK06175 L-aspartate oxidase; 96.0 0.087 1.9E-06 50.8 11.6 48 253-304 141-188 (433)
490 PRK06069 sdhA succinate dehydr 96.0 0.085 1.8E-06 52.9 11.8 50 254-305 151-200 (577)
491 PRK06854 adenylylsulfate reduc 95.9 0.11 2.4E-06 52.3 12.4 33 206-238 12-46 (608)
492 PRK12266 glpD glycerol-3-phosp 95.9 0.1 2.2E-06 51.5 11.9 33 206-238 7-39 (508)
493 PLN02464 glycerol-3-phosphate 95.9 0.1 2.3E-06 52.7 12.0 33 206-238 72-104 (627)
494 TIGR03329 Phn_aa_oxid putative 95.9 0.064 1.4E-06 52.2 10.3 33 206-238 25-59 (460)
495 TIGR00551 nadB L-aspartate oxi 95.9 0.1 2.2E-06 51.2 11.6 47 254-304 142-188 (488)
496 PRK04308 murD UDP-N-acetylmura 95.8 0.022 4.8E-07 55.2 6.9 31 58-88 5-35 (445)
497 PRK07121 hypothetical protein; 95.8 0.14 3E-06 50.3 12.4 34 205-238 20-53 (492)
498 KOG1298 Squalene monooxygenase 95.8 0.053 1.2E-06 49.8 8.5 36 205-240 45-80 (509)
499 COG1004 Ugd Predicted UDP-gluc 95.8 0.0087 1.9E-07 55.2 3.6 30 59-88 1-30 (414)
500 PRK06452 sdhA succinate dehydr 95.8 0.12 2.6E-06 51.6 12.0 50 253-304 148-197 (566)
No 1
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-48 Score=315.93 Aligned_cols=312 Identities=74% Similarity=1.177 Sum_probs=295.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
...+|+|||+|||+..+|+++++..++.+|+|.+...+..+||++..+.+..+||+||+++.+.++.+.++++..+.|.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCC-cc-ccCCCcceeeeccCCCCCCCCCcEEEEcCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGS-DA-FWNRGISACAVCDGAAPIFRDKPLAVIGGG 214 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G 214 (382)
++..+|.+++...+.+.+.++.+.+.+|.+|+|||...+...+||. +. ||.+.+..|..+++..+.+++|..+|||+|
T Consensus 87 i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGG 166 (322)
T KOG0404|consen 87 IITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGG 166 (322)
T ss_pred eeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCc
Confidence 9999999999999999999999999999999999999988888887 33 999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEec
Q 016820 215 DSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV 294 (382)
Q Consensus 215 ~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~ 294 (382)
.+++|-|.+|.+.+.+|++++|++.++.+..|++++.+..+|++++++.+.+...+ |+.+.++.+++..+++...+++
T Consensus 167 DsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd--~~~l~~l~ikn~~tge~~dl~v 244 (322)
T KOG0404|consen 167 DSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGD--GKLLNGLRIKNVKTGEETDLPV 244 (322)
T ss_pred HHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEechhhhhhccC--cccccceEEEecccCccccccc
Confidence 99999999999999999999999999999999999999999999999988888777 3457789999888888899999
Q ss_pred CeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 295 SGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 295 D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
+-++++.|..|++.+++..+++|++|++.+-+..-.|++|++||+||+.+.+++++..|...|..+|...-++|..
T Consensus 245 ~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~yL~s 320 (322)
T KOG0404|consen 245 SGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAERYLTS 320 (322)
T ss_pred ceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHHHHhhc
Confidence 9999999999999999878899999999999888999999999999999989999999999999999999999873
No 2
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-44 Score=320.27 Aligned_cols=301 Identities=51% Similarity=0.827 Sum_probs=268.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
..+||+|||||||||+||.++.+.+.+ ++|+| ...+||.+..+...++||+++......++.+.+++.+...++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~-----~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~ 76 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILE-----GGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGV 76 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEe-----cCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCe
Confidence 468999999999999999999999999 55555 346778888778999999999999999999999999999999
Q ss_pred EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCc
Q 016820 136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGD 215 (382)
Q Consensus 136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~ 215 (382)
++....|..++..++.+.+.++++++++++||+|||..++.|.+||..+++.+.+++|..++. .+.+++++|||+|+
T Consensus 77 ~~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg---~~~~k~v~ViGgG~ 153 (305)
T COG0492 77 EIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG---FFKGKDVVVIGGGD 153 (305)
T ss_pred EEEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc---cccCCeEEEEcCCH
Confidence 999988999988776889998888899999999999999999999888899999999999888 45688999999999
Q ss_pred hHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecC
Q 016820 216 SAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS 295 (382)
Q Consensus 216 ~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D 295 (382)
+|+|-|.+|.+.+++||+++|++.+.....+++++.+..+|++++++.+.++..++ ++++.+++.. +....+++|
T Consensus 154 sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~----v~~v~l~~~~-~~~~~~~~~ 228 (305)
T COG0492 154 SAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDD----VEGVVLKNVK-GEEKELPVD 228 (305)
T ss_pred HHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecCc----cceEEEEecC-CceEEEEec
Confidence 99999999999999999999999999988887776666699999999999999986 4458888754 445689999
Q ss_pred eEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820 296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 371 (382)
Q Consensus 296 ~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~ 371 (382)
.++++.|..|+..++.....++++|++.+|+ .++|+.|+|||+||++....+++..|..+|..||.++.++|...
T Consensus 229 gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~-~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 229 GVFIAIGHLPNTELLKGLGVLDENGYIVVDE-EMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred eEEEecCCCCchHHHhhccccCCCCcEEcCC-CcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 9999999999999887333378999999999 59999999999999998777799999999999999999999854
No 3
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=3.7e-43 Score=321.70 Aligned_cols=298 Identities=57% Similarity=0.959 Sum_probs=248.5
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEE
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF 138 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 138 (382)
+||+|||||++|+++|..|++.|++|+|||+. . .||.+.......++|+++......++.+++++.+++++++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~----~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 75 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGM----E-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEII 75 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecc----C-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEE
Confidence 58999999999999999999999999999952 2 577776665666677777667788999999999999999998
Q ss_pred EeeEEEEEecCCcEEEEECC-eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchH
Q 016820 139 TETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSA 217 (382)
Q Consensus 139 ~~~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a 217 (382)
..+|.+++++++.+.+.+++ .+++||+||+|+|++|+.|.+||.+.++...++.+...... ...+++++|+|+|.+|
T Consensus 76 ~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G~~~ 153 (300)
T TIGR01292 76 YEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGP--FFKNKEVAVVGGGDSA 153 (300)
T ss_pred EEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChh--hcCCCEEEEECCChHH
Confidence 88899999988778777654 57999999999999999999999877666666655554443 4567899999999999
Q ss_pred HHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCC-CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820 218 MEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNP-KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296 (382)
Q Consensus 218 ~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~ 296 (382)
+|++..|.+.+.+|+++.+.+.+.....+.+ .+++. ||++++++++.+++.++. +..+++.+...+++.++++|.
T Consensus 154 ~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~-~l~~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~i~~D~ 229 (300)
T TIGR01292 154 IEEALYLTRIAKKVTLVHRRDKFRAEKILLD-RLRKNPNIEFLWNSTVKEIVGDNK---VEGVKIKNTVTGEEEELKVDG 229 (300)
T ss_pred HHHHHHHHhhcCEEEEEEeCcccCcCHHHHH-HHHhCCCeEEEeccEEEEEEccCc---EEEEEEEecCCCceEEEEccE
Confidence 9999999999999999999988776666654 45555 999999999999987652 445666544445567899999
Q ss_pred EEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHH
Q 016820 297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 368 (382)
Q Consensus 297 vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l 368 (382)
+++|+|++|+..++...+.++++|++.+|+ +++|++||||++|||+...++.+..|+.+|+.||.+|.++|
T Consensus 230 vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~-~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 230 VFIAIGHEPNTELLKGLLELDEGGYIVTDE-GMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred EEEeeCCCCChHHHHHhheecCCCcEEECC-CCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 999999999998876335667889999998 58899999999999997557889999999999999998764
No 4
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=5.7e-42 Score=316.26 Aligned_cols=307 Identities=48% Similarity=0.806 Sum_probs=254.0
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
...+||+||||||||+++|..|++.|++++++|. . ..||.+......+++|+.+.....+++.+++.+...++++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~----~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG----M-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFET 78 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe----e-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 4578999999999999999999999999999993 2 4577776666667778777778888999999999999999
Q ss_pred EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCc
Q 016820 136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGD 215 (382)
Q Consensus 136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~ 215 (382)
++..+++..|+..++.|.+..+...+.||+||+|||++|+.|++||.+.++.+.++.+..++.. ...+++++|||+|.
T Consensus 79 ~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~--~~~g~~vvVvGgG~ 156 (321)
T PRK10262 79 EIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGN 156 (321)
T ss_pred EEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHH--HcCCCEEEEECCCH
Confidence 8888888889988888888765567999999999999999999999777777777777776665 56789999999999
Q ss_pred hHHHHHHHHhhcCCEEEEEEeCCCCcchH---HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC-CceEE
Q 016820 216 SAMEEANFLTKYGSKVYIIHRRDSFRASK---IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT-GQVSD 291 (382)
Q Consensus 216 ~a~e~a~~l~~~g~~v~~~~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~-~~~~~ 291 (382)
+|+|+|..|.+.+++|+++++.+.+.... ....+.+++.||++++++.+.++..++.+ +..+++.+... ++..+
T Consensus 157 ~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~--~~~v~~~~~~~~~~~~~ 234 (321)
T PRK10262 157 TAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMG--VTGVRLRDTQNSDNIES 234 (321)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCcc--EEEEEEEEcCCCCeEEE
Confidence 99999999999999999999988664322 22345677889999999999999876532 44577765321 23467
Q ss_pred EecCeEEEeeCCCCChhhhcccccccCCCceeeCCC----CCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHH
Q 016820 292 LKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHY 367 (382)
Q Consensus 292 ~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~----~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~ 367 (382)
+++|.|++++|.+|+..++..++.+ ++|++.+|++ .++|++|||||+|||++...++...|+.+|..||..|.++
T Consensus 235 i~~D~vv~a~G~~p~~~l~~~~l~~-~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~ 313 (321)
T PRK10262 235 LDVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERY 313 (321)
T ss_pred EECCEEEEEeCCccChhHhhccccc-cCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHH
Confidence 9999999999999999987655554 4689999973 4789999999999999765677788999999999999999
Q ss_pred HHHcc
Q 016820 368 LQEIG 372 (382)
Q Consensus 368 l~~~~ 372 (382)
|.+..
T Consensus 314 l~~~~ 318 (321)
T PRK10262 314 LDGLA 318 (321)
T ss_pred HHhcc
Confidence 98654
No 5
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=7.9e-41 Score=328.26 Aligned_cols=304 Identities=39% Similarity=0.649 Sum_probs=248.0
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
.+||+||||||||+++|..|++.|++|+|||+. ..||.+.......++|+.. ...+.++.+++++.++++++++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-----~~GG~~~~~~~i~~~pg~~-~~~~~~l~~~l~~~~~~~gv~~ 77 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-----DFGGQITITSEVVNYPGIL-NTTGPELMQEMRQQAQDFGVKF 77 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-----CCCceEEeccccccCCCCc-CCCHHHHHHHHHHHHHHcCCEE
Confidence 489999999999999999999999999999952 4788777655555566553 3566789999999999999999
Q ss_pred EEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchH
Q 016820 138 FTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSA 217 (382)
Q Consensus 138 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a 217 (382)
+.++|..++.+++.+.+.+.++.+.+++||+|||++|+.|++||.+.+..+.++.+..++.. ...+++++|||+|++|
T Consensus 78 ~~~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~--~~~g~~VvVIGgG~~g 155 (555)
T TIGR03143 78 LQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGE--FFTGMDVFVIGGGFAA 155 (555)
T ss_pred eccEEEEEEecCCEEEEEecCCEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChh--hcCCCEEEEECCCHHH
Confidence 87789999987766777776778999999999999999999999876666667666665554 4568999999999999
Q ss_pred HHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE--ecC
Q 016820 218 MEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL--KVS 295 (382)
Q Consensus 218 ~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~--~~D 295 (382)
+|+|..|.+.+.+|+++.+.+.+.......++++..+||++++++.+.++..++. +..+.+....+++...+ ++|
T Consensus 156 ~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~~~~---v~~v~~~~~~~G~~~~~~~~~D 232 (555)
T TIGR03143 156 AEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATGDDG---LRYAKFVNNVTGEITEYKAPKD 232 (555)
T ss_pred HHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEEEEEEcCCc---EEEEEEEECCCCCEEEEecccc
Confidence 9999999999999999999987755555555666677999999999999986542 33344443333433333 477
Q ss_pred e----EEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820 296 G----LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 371 (382)
Q Consensus 296 ~----vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~ 371 (382)
. +++++|++|++.++...+.++++|++.||+ +++|++|+|||+|||+...++.+..|+.+|+.||.+|.++|.+.
T Consensus 233 ~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 233 AGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNE-DMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred ccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCC-ccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHhh
Confidence 6 999999999999887667788899999998 78999999999999986455678899999999999999999754
Q ss_pred cC
Q 016820 372 GS 373 (382)
Q Consensus 372 ~~ 373 (382)
..
T Consensus 312 ~~ 313 (555)
T TIGR03143 312 KE 313 (555)
T ss_pred hh
Confidence 43
No 6
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2.2e-40 Score=323.22 Aligned_cols=304 Identities=34% Similarity=0.551 Sum_probs=254.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..+||+|||||++|+++|.+|+++|++|+|+++ ..||++.....++++++++ ...+.++.+++.+.+++++++
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~------~~GG~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~gv~ 282 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE------RFGGQVLDTMGIENFISVP-ETEGPKLAAALEEHVKEYDVD 282 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec------CCCCeeeccCcccccCCCC-CCCHHHHHHHHHHHHHHCCCE
Confidence 468999999999999999999999999999984 4788876555556666654 367889999999999999999
Q ss_pred EEEe-eEEEEEecCCcEEEEECC-eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGG 214 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G 214 (382)
++.+ +|.+++.+++.+.+.+++ ..+.||+||+|||.+|+.+++||.+.+....++.+...+.. ...+++|+|||+|
T Consensus 283 i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~--~~~gk~VvVVGgG 360 (517)
T PRK15317 283 IMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP--LFKGKRVAVIGGG 360 (517)
T ss_pred EEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCch--hcCCCEEEEECCC
Confidence 9887 799999877777776644 46999999999999999999999777766666666555554 4578999999999
Q ss_pred chHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEec
Q 016820 215 DSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV 294 (382)
Q Consensus 215 ~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~ 294 (382)
++|+|+|..|...+.+|+++.+.+.+.....+.+.+.+..||++++++.+.++..+++ .+..+++.+..+++..++++
T Consensus 361 ~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g--~v~~v~~~~~~~g~~~~i~~ 438 (517)
T PRK15317 361 NSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDGD--KVTGLTYKDRTTGEEHHLEL 438 (517)
T ss_pred HHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcCCC--cEEEEEEEECCCCcEEEEEc
Confidence 9999999999999999999999988866666554444457999999999999987643 25567776544455568999
Q ss_pred CeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820 295 SGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIG 372 (382)
Q Consensus 295 D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~ 372 (382)
|.+++++|.+|++.++...+.++++|++.+|+ +++|+.|||||+|||+..+.+++..|+.+|..||.++..+|....
T Consensus 439 D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~-~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 439 EGVFVQIGLVPNTEWLKGTVELNRRGEIIVDA-RGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred CEEEEeECCccCchHHhhheeeCCCCcEEECc-CCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhcC
Confidence 99999999999999887346778889999998 678999999999999987678899999999999999999998654
No 7
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=2.6e-40 Score=322.37 Aligned_cols=302 Identities=33% Similarity=0.572 Sum_probs=247.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
...+||+|||||+||+++|..|++.|++|+|++. ..||++.....++++++.+. ..+.++.+++.+.++++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~------~~GG~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~gv 282 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE------RIGGQVKDTVGIENLISVPY-TTGSQLAANLEEHIKQYPI 282 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec------CCCCccccCcCcccccccCC-CCHHHHHHHHHHHHHHhCC
Confidence 3468999999999999999999999999999983 47777765445555555543 4678899999999999999
Q ss_pred EEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcC
Q 016820 136 QIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGG 213 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~ 213 (382)
+++.+ +|..++.+++.+.+.++ +..+.||++|+|+|++|+.+++||...+....++.+..++.. ...+++++|||+
T Consensus 283 ~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~--~~~~k~VvViGg 360 (515)
T TIGR03140 283 DLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGP--FFKGKDVAVIGG 360 (515)
T ss_pred eEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChh--hcCCCEEEEECC
Confidence 99887 79999887766777664 446999999999999999999999766555555555544443 456899999999
Q ss_pred CchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccC-CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820 214 GDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTN-PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL 292 (382)
Q Consensus 214 G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~ 292 (382)
|++|+|+|..|.+.+.+|+++.+.+.+.....+. +.+++ .||++++++.+.++..+++. +..+.+.+..+++...+
T Consensus 361 G~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~-~~l~~~~gV~i~~~~~v~~i~~~~~~--v~~v~~~~~~~~~~~~i 437 (515)
T TIGR03140 361 GNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQ-DKLKSLPNVDILTSAQTTEIVGDGDK--VTGIRYQDRNSGEEKQL 437 (515)
T ss_pred cHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHH-HHHhcCCCCEEEECCeeEEEEcCCCE--EEEEEEEECCCCcEEEE
Confidence 9999999999999999999999988886655544 44554 69999999999999876432 55677765434555689
Q ss_pred ecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 293 ~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
++|.+++++|.+|++.++...+.++++|++.||+ +++|++|+|||+|||+..+.+++..|+.+|..||.+|..+|..
T Consensus 438 ~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 438 DLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDE-RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred EcCEEEEEeCCcCCchHHhhhcccCCCCeEEECC-CCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 9999999999999999887346677889999999 7889999999999999765677889999999999999999864
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=4.4e-39 Score=295.32 Aligned_cols=296 Identities=20% Similarity=0.266 Sum_probs=232.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcccCCCC-----CCCCChHHHHHHHHHH
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVENFPGF-----PQGILGGDLMDRCRNQ 129 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 129 (382)
.+++|||||||++|+.+|..|.+.- .+|+|||+. ..+.+... ...++..++...+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~---------------~~hl~~plL~eva~g~l~~~~i~~p~~~~ 66 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR---------------DYHLFTPLLYEVATGTLSESEIAIPLRAL 66 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCC---------------CccccchhhhhhhcCCCChhheeccHHHH
Confidence 3578999999999999999999985 999999952 11112111 1234567777788888
Q ss_pred HHHcC-cEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc--ccCCCcceeeec--------cC
Q 016820 130 SLRFG-TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA--FWNRGISACAVC--------DG 198 (382)
Q Consensus 130 ~~~~g-i~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~--~~~~~~~~~~~~--------~~ 198 (382)
+++.+ ++++.++|++||.+++.+++.. ...+.||+||+|+|+.+..+.+||..+ +..+++.+.... +.
T Consensus 67 ~~~~~~v~~~~~~V~~ID~~~k~V~~~~-~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~ 145 (405)
T COG1252 67 LRKSGNVQFVQGEVTDIDRDAKKVTLAD-LGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEK 145 (405)
T ss_pred hcccCceEEEEEEEEEEcccCCEEEeCC-CccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 88555 9999999999999999776652 477999999999999999999999776 333444443211 11
Q ss_pred CC-CCC--CCCcEEEEcCCchHHHHHHHHhhcC-------------CEEEEEEeCCCCcc-----hHHHHHHhccCCCcE
Q 016820 199 AA-PIF--RDKPLAVIGGGDSAMEEANFLTKYG-------------SKVYIIHRRDSFRA-----SKIMQNRALTNPKID 257 (382)
Q Consensus 199 ~~-~~~--~~~~v~VvG~G~~a~e~a~~l~~~g-------------~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~ 257 (382)
.. ... ...+++|+|+|++|+|+|.+|.++- .+|+++++.+.+.. .....++.|++.||+
T Consensus 146 a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 146 ASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVE 225 (405)
T ss_pred hhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCE
Confidence 10 011 2247999999999999999988652 28999999998743 122335789999999
Q ss_pred EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCce
Q 016820 258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGV 336 (382)
Q Consensus 258 ~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~v 336 (382)
+++++.|++++++. |.+++ +++ ++++|.+||++|.+++...-. .+.+.|..|++.||+..+.+++|+|
T Consensus 226 v~l~~~Vt~v~~~~-------v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~I 294 (405)
T COG1252 226 VLLGTPVTEVTPDG-------VTLKD---GEE-EIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDI 294 (405)
T ss_pred EEcCCceEEECCCc-------EEEcc---CCe-eEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCe
Confidence 99999999999998 77765 432 699999999999999877655 3677788999999998888899999
Q ss_pred EEecccCCc-----hhhHHHHHHhhHHHHHHHHHHHHHHccCcccccc
Q 016820 337 FAAGDVQDK-----KYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379 (382)
Q Consensus 337 ya~GD~~~~-----~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~~~~ 379 (382)
||+|||+.. .|+.+..|.+||..+|+||.+.+.++++.++++.
T Consensus 295 Fa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~ 342 (405)
T COG1252 295 FAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYK 342 (405)
T ss_pred EEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCccc
Confidence 999999953 2789999999999999999999999888777654
No 9
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.8e-37 Score=291.81 Aligned_cols=290 Identities=26% Similarity=0.349 Sum_probs=223.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------C---CCCCC---
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------F---PGFPQ--- 115 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~---~~~~~--- 115 (382)
..+|++|||+|++|..+|.+++++|.+|.++|+ ....||+|....+.+. . .++..
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~----~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~ 78 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEK----GERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP 78 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEee----cCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence 569999999999999999999999999999994 3378888876554321 0 11110
Q ss_pred CCChHHHHHHH-----------HHHHHHcCcEEEEeeEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCCCCCCCc
Q 016820 116 GILGGDLMDRC-----------RNQSLRFGTQIFTETVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKLQFPGSD 183 (382)
Q Consensus 116 ~~~~~~~~~~~-----------~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~~~~g~~ 183 (382)
.++..++.++. +..+++.+++++.++...++ ++++.+..+ ..+++++++|+|||++|+.|++++.+
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~ 156 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPPGPGID 156 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCC
Confidence 23444444443 33445669999999887777 445555432 36799999999999999999988877
Q ss_pred cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcE
Q 016820 184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKID 257 (382)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~ 257 (382)
... +......... ...+++++|||+|.+|+|+|..+.++|.+||++.+.+.+.. ++.+ .+.|++.|++
T Consensus 157 ~~~---~~~s~~~l~~--~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~-~~~l~~~gv~ 230 (454)
T COG1249 157 GAR---ILDSSDALFL--LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKEL-TKQLEKGGVK 230 (454)
T ss_pred CCe---EEechhhccc--ccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHH-HHHHHhCCeE
Confidence 521 1111111111 34589999999999999999999999999999999999853 3333 4567778899
Q ss_pred EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCC
Q 016820 258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVP 334 (382)
Q Consensus 258 ~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~ 334 (382)
++.++.+++++..+++ ..+.+++ ++...+.+|.+++++|++||++-+. .++.++++|+|.|| ..++|++|
T Consensus 231 i~~~~~v~~~~~~~~~---v~v~~~~---g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp 303 (454)
T COG1249 231 ILLNTKVTAVEKKDDG---VLVTLED---GEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVP 303 (454)
T ss_pred EEccceEEEEEecCCe---EEEEEec---CCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCC
Confidence 9999999999988764 1244444 3323789999999999999999554 68899999999999 58999999
Q ss_pred ceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 335 GVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 335 ~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
||||+|||.+.+ .+++.|..+|+.+|+||..
T Consensus 304 ~IyA~GDV~~~~-~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 304 GIYAIGDVIGGP-MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred CEEEeeccCCCc-ccHhHHHHHHHHHHHHHhC
Confidence 999999998754 4999999999999999997
No 10
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.9e-37 Score=296.65 Aligned_cols=285 Identities=21% Similarity=0.253 Sum_probs=215.6
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------CCCCC-----CCC
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------FPGFP-----QGI 117 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~~~~~-----~~~ 117 (382)
++||+||||||+|+++|..++++|++|+|+|+ ..+||.|....+.+. .+.+. ..+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-----~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 76 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-----PRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARF 76 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-----CccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCc
Confidence 58999999999999999999999999999994 267888765433211 11111 012
Q ss_pred ChH-----------HHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcccc
Q 016820 118 LGG-----------DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFW 186 (382)
Q Consensus 118 ~~~-----------~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~ 186 (382)
... ++.+.+++.+++.|++++.+++..++++ .+.+..++..+.||+||+|||++|..|++||.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~ 154 (446)
T TIGR01424 77 DWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGI 154 (446)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEecCCeEEEcCEEEEecCCcCCCCCCCCcccee
Confidence 222 2344555566778999999998888754 455544566799999999999999999999865321
Q ss_pred CCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCcEEEcC
Q 016820 187 NRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKIDVIWN 261 (382)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv~~~~~ 261 (382)
.. ...... ...+++++|||+|.+|+|+|..+.+.|.+|+++++.+.+.. . .....+.+++.||+++++
T Consensus 155 ~~-----~~~~~l--~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (446)
T TIGR01424 155 TS-----NEAFHL--PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQ 227 (446)
T ss_pred ch-----HHhhcc--cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeC
Confidence 10 000111 22478999999999999999999999999999999887532 1 122345677889999999
Q ss_pred ceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCcCCCCceEE
Q 016820 262 SVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHTSVPGVFA 338 (382)
Q Consensus 262 ~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~vya 338 (382)
+++.+++.++++ +.+.. .++..+++|.+++++|.+|++..+ ..++.++++|++.||+ +++|++|||||
T Consensus 228 ~~v~~i~~~~~~-----~~v~~---~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~-~~~Ts~~~IyA 298 (446)
T TIGR01424 228 TSLTSITKTDDG-----LKVTL---SHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDE-YSRTSIPSIYA 298 (446)
T ss_pred CEEEEEEEcCCe-----EEEEE---cCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCC-CCccCCCCEEE
Confidence 999999876553 33332 123579999999999999999853 2567788899999998 78899999999
Q ss_pred ecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 339 AGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 339 ~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
+|||++. +..++.|++||+.+|.||..
T Consensus 299 ~GD~~~~-~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 299 VGDVTDR-INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred eeccCCC-ccchhHHHHHHHHHHHHHhc
Confidence 9999974 57899999999999999963
No 11
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.1e-36 Score=294.27 Aligned_cols=289 Identities=23% Similarity=0.289 Sum_probs=214.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cCCCCC----C
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NFPGFP----Q 115 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~~~~~----~ 115 (382)
.++||+||||||+|+++|..|++.|++|+|||+. ..||.+....+.+ ...+++ .
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-----~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-----LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV 78 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-----ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence 4589999999999999999999999999999952 5677766544321 122322 1
Q ss_pred CCChHHHHHH-----------HHHHHHHc-CcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCc
Q 016820 116 GILGGDLMDR-----------CRNQSLRF-GTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD 183 (382)
Q Consensus 116 ~~~~~~~~~~-----------~~~~~~~~-gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~ 183 (382)
.++..++.++ +...+++. |++++.++...++ ++.+.+ ++.++.||+||+|||++|+.|++||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~--~~~v~v--~~~~~~~d~lViATGs~p~~p~i~G~~ 154 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES--PNTVRV--GGETLRAKRIFINTGARAAIPPIPGLD 154 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEcc--CCEEEE--CcEEEEeCEEEEcCCCCCCCCCCCCCC
Confidence 3344444433 33344555 8999988765443 344444 566799999999999999999999976
Q ss_pred cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch-----HHHHHHhccCCCcEE
Q 016820 184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS-----KIMQNRALTNPKIDV 258 (382)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~~~~l~~~gv~~ 258 (382)
.... ......... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+... .....+.+++.||++
T Consensus 155 ~~~~---~~~~~~~~~--~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i 229 (463)
T PRK06370 155 EVGY---LTNETIFSL--DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDV 229 (463)
T ss_pred cCce---EcchHhhCc--cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEE
Confidence 5211 111111111 234789999999999999999999999999999998876321 223345677899999
Q ss_pred EcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCc
Q 016820 259 IWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPG 335 (382)
Q Consensus 259 ~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~ 335 (382)
++++++.+++.++++. .+.+.. .+++..+++|.+++++|.+|++..+ . .++.++++|++.||+ .++|+.||
T Consensus 230 ~~~~~V~~i~~~~~~~---~v~~~~--~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~-~l~t~~~~ 303 (463)
T PRK06370 230 RLNAECIRVERDGDGI---AVGLDC--NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDD-QLRTTNPG 303 (463)
T ss_pred EeCCEEEEEEEcCCEE---EEEEEe--CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECc-CCcCCCCC
Confidence 9999999998876531 233332 1234679999999999999999833 2 467788899999998 68899999
Q ss_pred eEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
|||+|||++. ++..+.|..||+.+|.||..
T Consensus 304 IyAiGD~~~~-~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 304 IYAAGDCNGR-GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred EEEeeecCCC-cccHHHHHHHHHHHHHHHhC
Confidence 9999999874 67889999999999999864
No 12
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.3e-36 Score=291.92 Aligned_cols=284 Identities=21% Similarity=0.217 Sum_probs=210.8
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC-----------------CCCC----CC
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-----------------PGFP----QG 116 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-----------------~~~~----~~ 116 (382)
++||+||||||+|+++|..|+++|.+|+|||+. .+||.|....+.+.. .+++ ..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-----~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 76 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-----KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENT 76 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-----ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCc
Confidence 589999999999999999999999999999942 578877654333210 0111 11
Q ss_pred CChHHHHH-----------HHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC-CCCCCcc
Q 016820 117 ILGGDLMD-----------RCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL-QFPGSDA 184 (382)
Q Consensus 117 ~~~~~~~~-----------~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~-~~~g~~~ 184 (382)
....++.+ .+...+++.|++++.++....+ ++.+ ..++..+.||+||+|||++|+.| ++||.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v--~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~~ 152 (450)
T TIGR01421 77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK--DGTV--EVNGRDYTAPHILIATGGKPSFPENIPGAEL 152 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEE--EECCEEEEeCEEEEecCCCCCCCCCCCCCce
Confidence 23333332 2444556679999999765443 3333 33566799999999999999988 8888653
Q ss_pred ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCcEEE
Q 016820 185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKIDVI 259 (382)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv~~~ 259 (382)
... +...... ...+++++|||+|.+|+|+|..|.+.|++||++++.+.+.. . ....++.|++.||+++
T Consensus 153 ~~~-----~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 153 GTD-----SDGFFAL--EELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVH 225 (450)
T ss_pred eEc-----HHHhhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEE
Confidence 211 1101111 22468999999999999999999999999999999886531 1 2223456778899999
Q ss_pred cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCce
Q 016820 260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPGV 336 (382)
Q Consensus 260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~v 336 (382)
+++.+++++.+.++. ..+++++ + ...+++|.+++++|++|++..+ . .++.++++|++.||+ +++|+.|||
T Consensus 226 ~~~~v~~i~~~~~~~--~~v~~~~---g-~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~-~~~T~~p~I 298 (450)
T TIGR01421 226 KLSKPVKVEKTVEGK--LVIHFED---G-KSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDE-YQNTNVPGI 298 (450)
T ss_pred cCCEEEEEEEeCCce--EEEEECC---C-cEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCC-CCcCCCCCE
Confidence 999999998765431 1233332 2 2569999999999999999864 2 577888899999998 689999999
Q ss_pred EEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 337 FAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
||+|||++. +..++.|..+|+.+|.+|.
T Consensus 299 yAiGD~~~~-~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 299 YALGDVVGK-VELTPVAIAAGRKLSERLF 326 (450)
T ss_pred EEEEecCCC-cccHHHHHHHHHHHHHHHh
Confidence 999999974 5688899999999999986
No 13
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=7.7e-37 Score=295.73 Aligned_cols=288 Identities=24% Similarity=0.277 Sum_probs=214.8
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc------------------cCC--CCCC
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE------------------NFP--GFPQ 115 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~------------------~~~--~~~~ 115 (382)
+..+||+|||||++|+++|..|++.|.+|+||| +....||.+....+.+ .+. ..+.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE----~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~ 78 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE----RYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL 78 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEe----ccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence 356899999999999999999999999999999 4445677765433211 010 1112
Q ss_pred CCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCCC
Q 016820 116 GILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFPG 181 (382)
Q Consensus 116 ~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~g 181 (382)
.++..++.++ +.+.+.+.+++++.+++..++. +.+.+...+ ..++||+||+|||++|..|++++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~ 156 (461)
T PRK05249 79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDP--HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVD 156 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecC--CEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCC
Confidence 2344444433 3445567799999998877764 455665433 26999999999999998887666
Q ss_pred CccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCC
Q 016820 182 SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPK 255 (382)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~g 255 (382)
... ..+..+...... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ...+ .+.+++.|
T Consensus 157 ~~~---~~v~~~~~~~~~--~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l-~~~l~~~g 230 (461)
T PRK05249 157 FDH---PRIYDSDSILSL--DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDAL-SYHLRDSG 230 (461)
T ss_pred CCC---CeEEcHHHhhch--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHH-HHHHHHcC
Confidence 432 222222222222 23579999999999999999999999999999999887632 2233 35577889
Q ss_pred cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCC
Q 016820 256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTS 332 (382)
Q Consensus 256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~ 332 (382)
|+++.++.+++++.++++ +.+.. .++..+++|.+++|+|++|++..+. .++.++++|++.||+ +++|+
T Consensus 231 I~v~~~~~v~~i~~~~~~-----~~v~~---~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~t~ 301 (461)
T PRK05249 231 VTIRHNEEVEKVEGGDDG-----VIVHL---KSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNE-NYQTA 301 (461)
T ss_pred CEEEECCEEEEEEEeCCe-----EEEEE---CCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCC-CcccC
Confidence 999999999999876543 33332 1224699999999999999998542 567788899999998 78899
Q ss_pred CCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
.|||||+|||++. +..+..|+.+|+.+|.+|.
T Consensus 302 ~~~IyAiGD~~~~-~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 302 VPHIYAVGDVIGF-PSLASASMDQGRIAAQHAV 333 (461)
T ss_pred CCCEEEeeecCCC-cccHhHHHHHHHHHHHHHc
Confidence 9999999999973 5789999999999999997
No 14
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.6e-36 Score=292.33 Aligned_cols=285 Identities=25% Similarity=0.274 Sum_probs=211.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc------------------CCCCC---C
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN------------------FPGFP---Q 115 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~------------------~~~~~---~ 115 (382)
..+||+||||||+|+++|..|+++|++|+|||+ . ..||++....+.+. ..++. .
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~----~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEA----K-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN 77 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec----c-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence 358999999999999999999999999999994 2 57777644322111 00111 1
Q ss_pred CCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc
Q 016820 116 GILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA 184 (382)
Q Consensus 116 ~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~ 184 (382)
......+.++ +.+.+.+.|++++.+++..++. +.+.+ ++.++.||+||+|||++|+.|++||.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~--~g~~~~~d~lViATGs~p~~p~i~g~~~ 153 (450)
T PRK06116 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV--NGERYTADHILIATGGRPSIPDIPGAEY 153 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE--CCEEEEeCEEEEecCCCCCCCCCCCcce
Confidence 2233333332 3344556799999998887763 34444 6677999999999999999999998653
Q ss_pred ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCcEEE
Q 016820 185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKIDVI 259 (382)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv~~~ 259 (382)
.+.. ...... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. . .....+.+++.||+++
T Consensus 154 ~~~~-----~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~ 226 (450)
T PRK06116 154 GITS-----DGFFAL--EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLH 226 (450)
T ss_pred eEch-----hHhhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEE
Confidence 2111 100111 22468999999999999999999999999999999876531 1 1222456778999999
Q ss_pred cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCce
Q 016820 260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGV 336 (382)
Q Consensus 260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~v 336 (382)
.++++.+++.++++. +.+.. .++.++++|.+++++|.+|+...+. .++.++++|++.||+ +++|++|||
T Consensus 227 ~~~~V~~i~~~~~g~----~~v~~---~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~Ts~~~I 298 (450)
T PRK06116 227 TNAVPKAVEKNADGS----LTLTL---EDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDE-YQNTNVPGI 298 (450)
T ss_pred CCCEEEEEEEcCCce----EEEEE---cCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCC-CCCcCCCCE
Confidence 999999998865542 22332 1225799999999999999998532 567888899999998 788999999
Q ss_pred EEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
||+|||++. +..+..|+.||+.+|++|..
T Consensus 299 yA~GD~~~~-~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 299 YAVGDVTGR-VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred EEEeecCCC-cCcHHHHHHHHHHHHHHHhC
Confidence 999999864 57889999999999999963
No 15
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.6e-36 Score=293.96 Aligned_cols=291 Identities=19% Similarity=0.221 Sum_probs=215.6
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc-----CCCCCCCcceecCCCccc---------------C--CCC
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM-----ANDIAPGGQLTTTSDVEN---------------F--PGF 113 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~-----~~~~~~gg~~~~~~~~~~---------------~--~~~ 113 (382)
...+||+|||||++|+.+|..++++|.+|+|||+.. .....+||+|....+.+. . .++
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 456899999999999999999999999999999521 112467888765332210 0 011
Q ss_pred C----CCCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC-e--EEEcCEEEEccCCCCc
Q 016820 114 P----QGILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-K--SVLADTVIVATGAVAK 175 (382)
Q Consensus 114 ~----~~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~-~--~~~~d~lvlA~G~~~~ 175 (382)
. ..+....+.++ ++..+...+++++.+++..+++. .+.+...+ . ++.||+||+|||++|.
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~--~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPN--EVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 1 12344444433 23344557999999999888754 45555433 2 4899999999999999
Q ss_pred CCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHh
Q 016820 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRA 250 (382)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~ 250 (382)
.|++||.+.... ....... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. . .....+.
T Consensus 181 ~p~ipG~~~~~~-----~~~~~~l--~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~ 253 (499)
T PLN02507 181 RPNIPGKELAIT-----SDEALSL--EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARN 253 (499)
T ss_pred CCCCCCccceec-----hHHhhhh--hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHH
Confidence 999998653211 1111111 22368999999999999999999999999999999876421 1 2222356
Q ss_pred ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCC
Q 016820 251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPG 327 (382)
Q Consensus 251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~ 327 (382)
|++.||+++.++++++++.++++ +.+.. +++.++++|.+++++|++|++..+. .++.++++|++.||+
T Consensus 254 l~~~GI~i~~~~~V~~i~~~~~~-----~~v~~---~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~- 324 (499)
T PLN02507 254 LEGRGINLHPRTNLTQLTKTEGG-----IKVIT---DHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE- 324 (499)
T ss_pred HHhCCCEEEeCCEEEEEEEeCCe-----EEEEE---CCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC-
Confidence 77889999999999999876543 33433 2335799999999999999998642 467788899999998
Q ss_pred CCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 328 TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 328 ~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
+++|+.|||||+|||++. +..++.|+.||+.+|.||.
T Consensus 325 ~~~Ts~p~IyAiGDv~~~-~~l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNR-INLTPVALMEGTCFAKTVF 361 (499)
T ss_pred CCcCCCCCEEEeeEcCCC-CccHHHHHHHHHHHHHHHc
Confidence 778999999999999974 5688999999999999986
No 16
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=5e-37 Score=292.97 Aligned_cols=299 Identities=20% Similarity=0.197 Sum_probs=219.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCC-CCCChHHHHHHHHHHHHHcCc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP-QGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi 135 (382)
.+++|||||||+||+.+|..|.+.+++|+|||++.... +... ++... ......++...++..+.+.++
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~--------~~~~---l~~~~~g~~~~~~~~~~~~~~~~~~~~ 77 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML--------FTPL---LPQTTTGTLEFRSICEPVRPALAKLPN 77 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc--------hhhh---HHHhcccCCChHHhHHHHHHHhccCCe
Confidence 35789999999999999999987789999999531110 0000 01111 122345666667777778899
Q ss_pred EEEEeeEEEEEecCCcEEEEE---------CCeEEEcCEEEEccCCCCcCCCCCCCccc--cCCCcceeeeccC------
Q 016820 136 QIFTETVSKVDFKSRPFKVFT---------DSKSVLADTVIVATGAVAKKLQFPGSDAF--WNRGISACAVCDG------ 198 (382)
Q Consensus 136 ~~~~~~v~~i~~~~~~~~v~~---------~~~~~~~d~lvlA~G~~~~~~~~~g~~~~--~~~~~~~~~~~~~------ 198 (382)
+++.++|++||++++.+.+.. ++.++.||+||+|||+.|..+.+||..+. ....+..+.....
T Consensus 78 ~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~ 157 (424)
T PTZ00318 78 RYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCI 157 (424)
T ss_pred EEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998877731 34469999999999999999999997652 2222222111000
Q ss_pred --C-C------CCCCCCcEEEEcCCchHHHHHHHHhh--------------cCCEEEEEEeCCCCcc-----hHHHHHHh
Q 016820 199 --A-A------PIFRDKPLAVIGGGDSAMEEANFLTK--------------YGSKVYIIHRRDSFRA-----SKIMQNRA 250 (382)
Q Consensus 199 --~-~------~~~~~~~v~VvG~G~~a~e~a~~l~~--------------~g~~v~~~~~~~~~~~-----~~~~~~~~ 250 (382)
. . .....++++|||+|.+|+|+|..|.+ .+.+|+++++.+.+.. .....++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~ 237 (424)
T PTZ00318 158 ERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRR 237 (424)
T ss_pred HHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHH
Confidence 0 0 01123589999999999999999875 3689999999876521 22333567
Q ss_pred ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCc
Q 016820 251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTH 330 (382)
Q Consensus 251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~ 330 (382)
|++.||++++++++.++.++. +.+++ + .++++|.++|++|.+|+......++..+++|++.||+.++.
T Consensus 238 L~~~gV~v~~~~~v~~v~~~~-------v~~~~---g--~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~ 305 (424)
T PTZ00318 238 LRRLGVDIRTKTAVKEVLDKE-------VVLKD---G--EVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRV 305 (424)
T ss_pred HHHCCCEEEeCCeEEEEeCCE-------EEECC---C--CEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCccc
Confidence 888999999999999997643 66643 4 57999999999999998533335677788899999995444
Q ss_pred CCCCceEEecccCCc----hhhHHHHHHhhHHHHHHHHHHHHHHcc-Cccccc
Q 016820 331 TSVPGVFAAGDVQDK----KYRQAVTAAGTGCMAALEAEHYLQEIG-SQEDKS 378 (382)
Q Consensus 331 t~~~~vya~GD~~~~----~~~~~~~a~~~g~~aa~~i~~~l~~~~-~~~~~~ 378 (382)
+++|||||+|||+.. .++.+..|++||..+|+||...+.+++ ..++.+
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~ 358 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY 358 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence 799999999999963 367889999999999999999999875 444443
No 17
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.4e-36 Score=290.37 Aligned_cols=290 Identities=24% Similarity=0.287 Sum_probs=212.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------CC--CC---CCC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------FP--GF---PQG 116 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~~--~~---~~~ 116 (382)
..+||+||||||+|+++|..|++.|.+|+|||+ .. .||.|....+.+. .. ++ ...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~----~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~ 77 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEK----EK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVG 77 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEec----cc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCc
Confidence 458999999999999999999999999999995 32 7887654433211 00 01 112
Q ss_pred CChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEE--CCeEEEcCEEEEccCCCCcCCCCCCCc
Q 016820 117 ILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAVAKKLQFPGSD 183 (382)
Q Consensus 117 ~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~--~~~~~~~d~lvlA~G~~~~~~~~~g~~ 183 (382)
....++.++ +...+++.|++++.++++.++.. .+.+.. ++..+.||+||+|||++|..| ||.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~--~~~v~~~~~~~~~~~d~lViAtGs~p~~~--pg~~ 153 (462)
T PRK06416 78 IDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPN--TVRVMTEDGEQTYTAKNIILATGSRPREL--PGIE 153 (462)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC--EEEEecCCCcEEEEeCEEEEeCCCCCCCC--CCCC
Confidence 344555555 34455677999999988877643 455542 235699999999999998754 4443
Q ss_pred cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEE
Q 016820 184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDV 258 (382)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~ 258 (382)
. ....++.+...... ...+++++|||+|.+|+|+|..|.+.|.+||++++.+.+.. .....++.+++.||++
T Consensus 154 ~-~~~~v~~~~~~~~~--~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i 230 (462)
T PRK06416 154 I-DGRVIWTSDEALNL--DEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKI 230 (462)
T ss_pred C-CCCeEEcchHhhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEE
Confidence 2 11112222222222 23468999999999999999999999999999999887632 1223345677889999
Q ss_pred EcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCcCCCCc
Q 016820 259 IWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHTSVPG 335 (382)
Q Consensus 259 ~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~ 335 (382)
+.++++.+++.++++ +.+.....++..++++|.+++++|.+|+..++ ..++.++ +|++.||+ .++|+.|+
T Consensus 231 ~~~~~V~~i~~~~~~-----v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~-~~~t~~~~ 303 (462)
T PRK06416 231 KTGAKAKKVEQTDDG-----VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDE-QLRTNVPN 303 (462)
T ss_pred EeCCEEEEEEEeCCE-----EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECC-CCccCCCC
Confidence 999999999887653 33332111333579999999999999999875 2467777 89999998 67899999
Q ss_pred eEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
|||+|||+.. ++.+..|+.||+.+|.||..
T Consensus 304 VyAiGD~~~~-~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 304 IYAIGDIVGG-PMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred EEEeeecCCC-cchHHHHHHHHHHHHHHHcC
Confidence 9999999863 67899999999999999974
No 18
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.2e-36 Score=288.68 Aligned_cols=288 Identities=20% Similarity=0.252 Sum_probs=211.6
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCC---CCCCCCChH-------HHHHHHH
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFP---GFPQGILGG-------DLMDRCR 127 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~ 127 (382)
.+||+|||||++|+++|..|+++|.+|+|||+ .....||++....+..... ......... ++.++++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~---~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQ---SNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLR 79 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcC---CCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999995 2224688876543322110 000011221 1222222
Q ss_pred -----HHHHHcCcEEEEeeEEEEEecCCcEEEEECC-e-EEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCC
Q 016820 128 -----NQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-K-SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAA 200 (382)
Q Consensus 128 -----~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~-~-~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 200 (382)
+..+..+++++.+++..++. +.+.+.+.+ . ++.||+||+|||++|..|++||.+... .+..+......
T Consensus 80 ~~~~~~~~~~~gv~~~~g~~~~i~~--~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~--~v~~~~~~~~~- 154 (441)
T PRK08010 80 NKNFHNLADMPNIDVIDGQAEFINN--HSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTP--GVYDSTGLLNL- 154 (441)
T ss_pred HhHHHHHhhcCCcEEEEEEEEEecC--CEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCC--CEEChhHhhcc-
Confidence 12223489999998888874 455665533 3 599999999999999999999975421 12222222222
Q ss_pred CCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCcEEEcCceeEEEEecCCcee
Q 016820 201 PIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKV 275 (382)
Q Consensus 201 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~ 275 (382)
...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. . .....+.+++.||+++.++.+.+++.++++
T Consensus 155 -~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~-- 231 (441)
T PRK08010 155 -KELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQ-- 231 (441)
T ss_pred -cccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE--
Confidence 23568999999999999999999999999999999876632 1 122245678899999999999999876542
Q ss_pred eeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHH
Q 016820 276 LGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT 352 (382)
Q Consensus 276 ~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~ 352 (382)
+.+.. ++ .++++|.+++++|.+|++..+. .++.++++|++.||+ +++|+.|||||+|||++. +...+.
T Consensus 232 ---v~v~~---~~-g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~~IyA~GD~~~~-~~~~~~ 302 (441)
T PRK08010 232 ---VQVHS---EH-AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDK-YLHTTADNIWAMGDVTGG-LQFTYI 302 (441)
T ss_pred ---EEEEE---cC-CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECC-CcccCCCCEEEeeecCCC-ccchhH
Confidence 44443 22 2489999999999999997642 467788899999998 689999999999999974 588899
Q ss_pred HHhhHHHHHHHHH
Q 016820 353 AAGTGCMAALEAE 365 (382)
Q Consensus 353 a~~~g~~aa~~i~ 365 (382)
|..+|+.++.+|.
T Consensus 303 a~~~~~~~~~~~~ 315 (441)
T PRK08010 303 SLDDYRIVRDELL 315 (441)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999985
No 19
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=9e-36 Score=288.16 Aligned_cols=289 Identities=27% Similarity=0.321 Sum_probs=210.5
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cCCC--CCCCCCh
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NFPG--FPQGILG 119 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~~~--~~~~~~~ 119 (382)
+||+||||||+|+++|..|+++|.+|+|||+ . ..||.|....+.+ .+.. ....++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~----~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~ 75 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVER----G-PLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDF 75 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeC----C-cccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCH
Confidence 5999999999999999999999999999994 2 3777765432211 0000 0011222
Q ss_pred H-------HHHHH-----HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccC
Q 016820 120 G-------DLMDR-----CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWN 187 (382)
Q Consensus 120 ~-------~~~~~-----~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~ 187 (382)
. ++... +...+++.+++++.+++..++ ...+.+..+...+.||+||+|||++|+.|++||.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~- 152 (463)
T TIGR02053 76 GELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAG- 152 (463)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCc-
Confidence 2 22222 234456779999999877654 34444432123589999999999999999999976531
Q ss_pred CCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCc
Q 016820 188 RGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNS 262 (382)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~ 262 (382)
+..+...... ...+++++|||+|.+|+|+|..|.++|.+|+++++.+.+.. .....++.+++.||++++++
T Consensus 153 --~~~~~~~~~~--~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~ 228 (463)
T TIGR02053 153 --YLTSEEALAL--DRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSA 228 (463)
T ss_pred --eECchhhhCc--ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCc
Confidence 1111111111 22368999999999999999999999999999999876532 12233466778899999999
Q ss_pred eeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCceEEe
Q 016820 263 VVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPGVFAA 339 (382)
Q Consensus 263 ~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~vya~ 339 (382)
++.+++.++++ ..+.+.. .+++.++++|.+++++|++|+...+ . .++.++++|++.||+ +++|+.|||||+
T Consensus 229 ~V~~i~~~~~~---~~v~~~~--~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~Ts~~~VyAi 302 (463)
T TIGR02053 229 QVKAVSVRGGG---KIITVEK--PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDE-TLRTSNPGIYAA 302 (463)
T ss_pred EEEEEEEcCCE---EEEEEEe--CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECC-CccCCCCCEEEe
Confidence 99999876543 1233332 1234679999999999999999833 2 567788899999998 789999999999
Q ss_pred cccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 340 GDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 340 GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
|||++. +..++.|..||+.+|.||..
T Consensus 303 GD~~~~-~~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 303 GDVTGG-LQLEYVAAKEGVVAAENALG 328 (463)
T ss_pred eecCCC-cccHhHHHHHHHHHHHHhcC
Confidence 999974 67899999999999999974
No 20
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=286.50 Aligned_cols=291 Identities=20% Similarity=0.253 Sum_probs=209.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------C--CCC---CCC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------F--PGF---PQG 116 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~--~~~---~~~ 116 (382)
.++||+|||||++|+.+|..|+++|.+|+|||+ ....||+|....+.+. . .++ ...
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~----~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVER----YSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPK 78 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEec----CCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence 458999999999999999999999999999994 3356777654332111 0 011 012
Q ss_pred CChHHHHHHHH-----------HHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcC-CCCCC
Q 016820 117 ILGGDLMDRCR-----------NQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKK-LQFPG 181 (382)
Q Consensus 117 ~~~~~~~~~~~-----------~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~-~~~~g 181 (382)
++...+.++.. ..+++.|++++.+++..++ .+.+.+..++ .++.||+||+|||++|.. |.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~ 156 (471)
T PRK06467 79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH 156 (471)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC
Confidence 23344433332 3345669999999877665 4556665433 369999999999999974 44555
Q ss_pred CccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCc
Q 016820 182 SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKI 256 (382)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv 256 (382)
.... +......... ...+++++|||+|.+|+|+|..|.+.|.+||++.+.+.+.. . .....+.+++. +
T Consensus 157 ~~~~----v~~~~~~~~~--~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v 229 (471)
T PRK06467 157 DDPR----IWDSTDALEL--KEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-F 229 (471)
T ss_pred CCCc----EEChHHhhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-e
Confidence 3321 1111111111 23468999999999999999999999999999999887632 1 12223456666 9
Q ss_pred EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCC
Q 016820 257 DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSV 333 (382)
Q Consensus 257 ~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~ 333 (382)
+++.++.+.+++.++++ ..+.+.+. .++..++++|.+++++|++|++.++. .++.++++|++.||+ +++|+.
T Consensus 230 ~i~~~~~v~~i~~~~~~---~~v~~~~~-~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~-~~~t~~ 304 (471)
T PRK06467 230 NIMLETKVTAVEAKEDG---IYVTMEGK-KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDK-QCRTNV 304 (471)
T ss_pred EEEcCCEEEEEEEcCCE---EEEEEEeC-CCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCC-CcccCC
Confidence 99999999999876543 12333321 12235799999999999999998643 568888999999998 788999
Q ss_pred CceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 334 PGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 334 ~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
|||||+|||++. +..++.|..+|+.+|.+|..
T Consensus 305 p~VyAiGDv~~~-~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 305 PHIFAIGDIVGQ-PMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred CCEEEehhhcCC-cccHHHHHHHHHHHHHHHcC
Confidence 999999999864 56899999999999999863
No 21
>PLN02546 glutathione reductase
Probab=100.00 E-value=8.3e-36 Score=290.16 Aligned_cols=290 Identities=20% Similarity=0.196 Sum_probs=215.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc-----CCCCCCCcceecCCCccc---------------C--CCC-
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM-----ANDIAPGGQLTTTSDVEN---------------F--PGF- 113 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~-----~~~~~~gg~~~~~~~~~~---------------~--~~~- 113 (382)
.++||+|||+|++|+.+|..++++|.+|+|||+.. .....+||+|....+.+. . .++
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 46899999999999999999999999999999421 012357887765443210 0 011
Q ss_pred ---CCCCChHH-----------HHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCC
Q 016820 114 ---PQGILGGD-----------LMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQF 179 (382)
Q Consensus 114 ---~~~~~~~~-----------~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~ 179 (382)
...+++.. +.+++.+.+++.|++++.++++.+++. . +..++..+.||+||+|||++|..|++
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~--V~v~G~~~~~D~LVIATGs~p~~P~I 233 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--T--VDVDGKLYTARNILIAVGGRPFIPDI 233 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--E--EEECCEEEECCEEEEeCCCCCCCCCC
Confidence 01223322 333445556677999999998888753 3 33466779999999999999999999
Q ss_pred CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCC
Q 016820 180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNP 254 (382)
Q Consensus 180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~ 254 (382)
||.+..+ .+...... ...+++++|||+|.+|+|+|..|.+++.+|+++.+.+.+.. . .....+.|++.
T Consensus 234 pG~~~v~-----~~~~~l~~--~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~ 306 (558)
T PLN02546 234 PGIEHAI-----DSDAALDL--PSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLR 306 (558)
T ss_pred CChhhcc-----CHHHHHhc--cccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHC
Confidence 9875421 11111112 23578999999999999999999999999999999876521 1 12234567789
Q ss_pred CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcC
Q 016820 255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHT 331 (382)
Q Consensus 255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t 331 (382)
||+++.++.+.++...+++. +.+.. +++....+|.+++++|++|+...+ + .++.++++|+|.||+ +++|
T Consensus 307 GV~i~~~~~v~~i~~~~~g~----v~v~~---~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~-~l~T 378 (558)
T PLN02546 307 GIEFHTEESPQAIIKSADGS----LSLKT---NKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDE-YSRT 378 (558)
T ss_pred CcEEEeCCEEEEEEEcCCCE----EEEEE---CCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECC-Ccee
Confidence 99999999999998754442 33433 233445689999999999999864 2 477788899999998 7889
Q ss_pred CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
++|||||+|||++. +..++.|+.+|+.+|.+|..
T Consensus 379 s~p~IYAaGDv~~~-~~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 379 SVPSIWAVGDVTDR-INLTPVALMEGGALAKTLFG 412 (558)
T ss_pred CCCCEEEeeccCCC-cccHHHHHHHHHHHHHHHcC
Confidence 99999999999974 57888999999999999863
No 22
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.4e-36 Score=288.30 Aligned_cols=295 Identities=26% Similarity=0.327 Sum_probs=215.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+||||||+|+++|..|+++|++|+|+| ....+||.+.+. +|.+ ....+++..+..+.++++|++
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e----~~~~~GG~l~~g-----ip~~--~l~~~~~~~~~~~~~~~~gv~ 207 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFE----ALHEPGGVLVYG-----IPEF--RLPKETVVKKEIENIKKLGVK 207 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEe----cCCCCCCeeeec-----CCCc--cCCccHHHHHHHHHHHHcCCE
Confidence 56899999999999999999999999999999 445677777531 2222 122344777777788889999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCccc---cCCCcc-----eeeeccCC-CCCCCCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDAF---WNRGIS-----ACAVCDGA-APIFRDK 206 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~~---~~~~~~-----~~~~~~~~-~~~~~~~ 206 (382)
++.++... ..+.+......+.||+||+|||+ .|+.+++||.+.- ...... ...+.... .....++
T Consensus 208 i~~~~~v~-----~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk 282 (464)
T PRK12831 208 IETNVVVG-----KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGK 282 (464)
T ss_pred EEcCCEEC-----CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCC
Confidence 98886321 11111100123569999999998 6998999997641 000000 00010000 0134689
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL 284 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~ 284 (382)
+|+|||+|++|+|+|..+.++|.+|+++++.... +...... +.+.++||+++++..+.++..+++|+ +.++++...
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~-v~~v~~~~~ 360 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEV-HHAKEEGVIFDLLTNPVEILGDENGW-VKGMKCIKM 360 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH-HHHHHcCCEEEecccceEEEecCCCe-EEEEEEEEE
Confidence 9999999999999999999999999999987643 2222222 23556899999999999998765543 555555321
Q ss_pred c---------------CCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEecccCCchh
Q 016820 285 V---------------TGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY 347 (382)
Q Consensus 285 ~---------------~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~ 347 (382)
. +++...+++|.|++++|..|+..++. .++.++++|++.+|+.+++|+.|+|||+|||... +
T Consensus 361 ~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g-~ 439 (464)
T PRK12831 361 ELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTG-A 439 (464)
T ss_pred EecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCC-c
Confidence 1 23345799999999999999998775 3677888899999985599999999999999864 5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHH
Q 016820 348 RQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 348 ~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
.++..|+.+|+.||.+|.++|.+
T Consensus 440 ~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 440 ATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Confidence 68899999999999999999975
No 23
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.1e-35 Score=285.46 Aligned_cols=288 Identities=22% Similarity=0.278 Sum_probs=210.9
Q ss_pred cccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc---------------cCC---CC--
Q 016820 54 IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE---------------NFP---GF-- 113 (382)
Q Consensus 54 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~---------------~~~---~~-- 113 (382)
+....+||+|||||++|+++|..|+++|.+|+|||+ . .+||+|....+.+ ..+ ++
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~----~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~ 76 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIER----G-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSA 76 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEc----c-ccccceecCCccccHHHHHHHHHHHHHhhccccCCccc
Confidence 455779999999999999999999999999999995 2 5777776543210 111 11
Q ss_pred -CCCCChHHHHHHHHHH------------HHHc-CcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcC
Q 016820 114 -PQGILGGDLMDRCRNQ------------SLRF-GTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKK 176 (382)
Q Consensus 114 -~~~~~~~~~~~~~~~~------------~~~~-gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~ 176 (382)
...+++.++.++..+. +.+. +++++.+++..++.+. +.+.+.+ .+++||+||+|||++|+.
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~--~~V~~~~g~~~~~~~d~lViATGs~p~~ 154 (468)
T PRK14694 77 QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERT--LTVTLNDGGEQTVHFDRAFIGTGARPAE 154 (468)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCE--EEEEecCCCeEEEECCEEEEeCCCCCCC
Confidence 1123445555443332 2233 7999999999997554 4554332 369999999999999999
Q ss_pred CCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhcc
Q 016820 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALT 252 (382)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~ 252 (382)
|++||.+..... ........ ...+++++|||+|.+|+|+|..|.++|.+|+++.+...++. .....++.++
T Consensus 155 p~i~G~~~~~~~---~~~~~~~l--~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~ 229 (468)
T PRK14694 155 PPVPGLAETPYL---TSTSALEL--DHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFR 229 (468)
T ss_pred CCCCCCCCCceE---cchhhhch--hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 999997652111 11111111 23468999999999999999999999999999987543321 1223346678
Q ss_pred CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCC
Q 016820 253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTT 329 (382)
Q Consensus 253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~ 329 (382)
+.||+++.+..+.+++.+++. +.+.. .+ .++++|.+++++|.+|+..++. .++.. ++|++.||+ .+
T Consensus 230 ~~GI~v~~~~~v~~i~~~~~~-----~~v~~---~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~-~~ 298 (468)
T PRK14694 230 REGIEVLKQTQASEVDYNGRE-----FILET---NA-GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDE-HL 298 (468)
T ss_pred hCCCEEEeCCEEEEEEEcCCE-----EEEEE---CC-CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCC-Cc
Confidence 899999999999999876542 33333 11 2599999999999999998753 34554 578999998 68
Q ss_pred cCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 330 HTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 330 ~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
+|+.|||||+|||++. +..++.|..+|+.+|.||.
T Consensus 299 ~Ts~~~IyA~GD~~~~-~~~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 299 QTTVSGIYAAGDCTDQ-PQFVYVAAAGGSRAAINMT 333 (468)
T ss_pred ccCCCCEEEEeecCCC-cccHHHHHHHHHHHHHHhc
Confidence 8999999999999974 5788899999999999986
No 24
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=1.5e-35 Score=284.18 Aligned_cols=289 Identities=24% Similarity=0.358 Sum_probs=213.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||||++|+++|..|++.|++|+|+| ....+||.+.+ ++|......++.+...+.+.++|++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie----~~~~~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv~ 199 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFE----ALHKPGGVVTY--------GIPEFRLPKEIVVTEIKTLKKLGVT 199 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe----cCCCCCcEeee--------cCCCccCCHHHHHHHHHHHHhCCcE
Confidence 45899999999999999999999999999999 44467776643 1222233456777777777888999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCccc---cCCCcc-eeeec------cCCCCCCCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDAF---WNRGIS-ACAVC------DGAAPIFRD 205 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~~---~~~~~~-~~~~~------~~~~~~~~~ 205 (382)
++.+++.. .. +..++....||+||+|||+ .|+.+++||.+.. ...... ..... ........+
T Consensus 200 ~~~~~~v~-----~~--v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~g 272 (449)
T TIGR01316 200 FRMNFLVG-----KT--ATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAG 272 (449)
T ss_pred EEeCCccC-----Cc--CCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCC
Confidence 99886331 11 2222223579999999998 6988889987631 000000 00000 000013357
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN 283 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~ 283 (382)
++|+|||+|++|+|+|..+.++|.+||+++++... ....... +.++++||+++++..+.++..+++|+ +..+.+..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~-~~l~~~GV~~~~~~~~~~i~~~~~g~-v~~v~~~~ 350 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEI-AHAEEEGVKFHFLCQPVEIIGDEEGN-VRAVKFRK 350 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH-HHHHhCCCEEEeccCcEEEEEcCCCe-EEEEEEEE
Confidence 89999999999999999999999999999988643 2233332 44677899999999999998765443 55565542
Q ss_pred cc---------------CCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchh
Q 016820 284 LV---------------TGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY 347 (382)
Q Consensus 284 ~~---------------~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~ 347 (382)
.. +++...+++|.|++++|.+|+..++. .++.++++|++.||+ .++|+.|+|||+|||+.. +
T Consensus 351 ~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~-~~~Ts~~~VfA~GD~~~g-~ 428 (449)
T TIGR01316 351 MDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDE-DQRTSIPGVFAGGDIILG-A 428 (449)
T ss_pred EEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCC-CCccCCCCEEEecCCCCC-c
Confidence 10 13345799999999999999988776 467788889999998 788999999999999863 5
Q ss_pred hHHHHHHhhHHHHHHHHHHHH
Q 016820 348 RQAVTAAGTGCMAALEAEHYL 368 (382)
Q Consensus 348 ~~~~~a~~~g~~aa~~i~~~l 368 (382)
.++..|+.+|+.||.+|.++|
T Consensus 429 ~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 429 ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 788999999999999999875
No 25
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=4.1e-36 Score=287.87 Aligned_cols=284 Identities=20% Similarity=0.228 Sum_probs=204.3
Q ss_pred ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCC--CChHHHHHHH-HHHHHHc
Q 016820 59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG--ILGGDLMDRC-RNQSLRF 133 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~ 133 (382)
++|||||||++|+.+|..|+++ +.+|+|||+.. ..+ +. .. .+|.+... ....+...+. ..+.++.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~----~~~--~~-~~---~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR----DMS--FA-NC---ALPYYIGEVVEDRKYALAYTPEKFYDRK 71 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC----Ccc--cc-cC---CcchhhcCccCCHHHcccCCHHHHHHhC
Confidence 4799999999999999999987 68999999531 111 00 00 01111100 1112222222 3344667
Q ss_pred CcEEEEe-eEEEEEecCCcEEEEECC--e--EEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcE
Q 016820 134 GTQIFTE-TVSKVDFKSRPFKVFTDS--K--SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPL 208 (382)
Q Consensus 134 gi~~~~~-~v~~i~~~~~~~~v~~~~--~--~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 208 (382)
|++++.+ +|..||.+++.+.+.... . ++.||+||+|||++|+.|++++...+..+.+..............++++
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v 151 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKA 151 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEE
Confidence 9999875 899999999988887532 2 4789999999999998887654333322333333222221112246899
Q ss_pred EEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820 209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN 283 (382)
Q Consensus 209 ~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~ 283 (382)
+|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ......+.+++.||+++++.++.+++... +++++
T Consensus 152 vViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-------v~~~~ 224 (438)
T PRK13512 152 LVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE-------VTFKS 224 (438)
T ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCE-------EEECC
Confidence 9999999999999999999999999999876532 12223466788999999999999997421 55543
Q ss_pred ccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---------hhhHHHHH
Q 016820 284 LVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---------KYRQAVTA 353 (382)
Q Consensus 284 ~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---------~~~~~~~a 353 (382)
+ ..+++|.+++++|++|+++++. .++.++++|++.||+ +++|++|||||+|||+.. .++.++.|
T Consensus 225 ---g--~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A 298 (438)
T PRK13512 225 ---G--KVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVND-KFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGA 298 (438)
T ss_pred ---C--CEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECC-CcccCCCCEEEeeeeEEeeeccCCCceecccchHH
Confidence 3 4689999999999999998876 467788889999998 678999999999999852 23567788
Q ss_pred HhhHHHHHHHHH
Q 016820 354 AGTGCMAALEAE 365 (382)
Q Consensus 354 ~~~g~~aa~~i~ 365 (382)
..+|+.+|+||.
T Consensus 299 ~~~a~~~a~ni~ 310 (438)
T PRK13512 299 HRAASIVAEQIA 310 (438)
T ss_pred HHHHHHHHHHhc
Confidence 899999999886
No 26
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.2e-35 Score=283.46 Aligned_cols=288 Identities=22% Similarity=0.279 Sum_probs=210.6
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCC---CCCCChHHHHHH---------
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGF---PQGILGGDLMDR--------- 125 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~---~~~~~~~~~~~~--------- 125 (382)
++||+||||||||+++|..|+++|.+|+|||+. ....||++....+.+...-+ ....+..++..+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~---~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEES---KAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLR 79 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecC---CcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999952 12368877644332211100 001122333222
Q ss_pred --HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCC
Q 016820 126 --CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAP 201 (382)
Q Consensus 126 --~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 201 (382)
..+.+.+.+++++.+++..++ ++.+.+...+ .++.||+||+|||++|+.|++||.+.. ..++.+......
T Consensus 80 ~~~~~~~~~~gV~~~~g~~~~~~--~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~--~~v~~~~~~~~~-- 153 (438)
T PRK07251 80 GKNYAMLAGSGVDLYDAEAHFVS--NKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADS--KHVYDSTGIQSL-- 153 (438)
T ss_pred HHHHHHHHhCCCEEEEEEEEEcc--CCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCC--CcEEchHHHhcc--
Confidence 234456679999998876553 4556665422 469999999999999999999997432 112222222222
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceee
Q 016820 202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVL 276 (382)
Q Consensus 202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~ 276 (382)
...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .....++.+++.||++++++++.+++.++++
T Consensus 154 ~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~--- 230 (438)
T PRK07251 154 ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQ--- 230 (438)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCE---
Confidence 23478999999999999999999999999999999886632 1222345677889999999999999876532
Q ss_pred eeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHH
Q 016820 277 GGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTA 353 (382)
Q Consensus 277 ~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a 353 (382)
+.+.. . +.++++|.+++++|.+|+...+. .++..+++|++.||+ .++|+.|||||+|||++. +...+.|
T Consensus 231 --v~v~~---~-g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~-~~~t~~~~IyaiGD~~~~-~~~~~~a 302 (438)
T PRK07251 231 --VLVVT---E-DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDD-YCQTSVPGVFAVGDVNGG-PQFTYIS 302 (438)
T ss_pred --EEEEE---C-CeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECC-CcccCCCCEEEeeecCCC-cccHhHH
Confidence 44433 1 25799999999999999987653 356677889999998 788999999999999974 5788899
Q ss_pred HhhHHHHHHHHH
Q 016820 354 AGTGCMAALEAE 365 (382)
Q Consensus 354 ~~~g~~aa~~i~ 365 (382)
..+|+.++.++.
T Consensus 303 ~~~~~~~~~~~~ 314 (438)
T PRK07251 303 LDDFRIVFGYLT 314 (438)
T ss_pred HHHHHHHHHHHc
Confidence 999998887775
No 27
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=6.5e-35 Score=281.52 Aligned_cols=287 Identities=25% Similarity=0.279 Sum_probs=211.0
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC-----------------CCCC------C
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-----------------PGFP------Q 115 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-----------------~~~~------~ 115 (382)
++|+|||+|++|+.+|..++++|.+|+|||+. ..||++....+.+.- .++. .
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-----~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 76 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-----GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEA 76 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-----CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccc
Confidence 58999999999999999999999999999952 367776554432110 0111 0
Q ss_pred CCChHHHH-----------HHHHHHHHHcCcEEEEeeEEEEE--ecCCcEEEEEC-Ce--EEEcCEEEEccCCCCcCCCC
Q 016820 116 GILGGDLM-----------DRCRNQSLRFGTQIFTETVSKVD--FKSRPFKVFTD-SK--SVLADTVIVATGAVAKKLQF 179 (382)
Q Consensus 116 ~~~~~~~~-----------~~~~~~~~~~gi~~~~~~v~~i~--~~~~~~~v~~~-~~--~~~~d~lvlA~G~~~~~~~~ 179 (382)
.++...+. +.+.+.+++++++++.+++..++ .+.+.+.+.++ +. ++.||+||+|||++|+.|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~ 156 (466)
T PRK07845 77 RVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT 156 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC
Confidence 12232222 23445556779999999887755 44566777653 33 69999999999999987665
Q ss_pred CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCC
Q 016820 180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNP 254 (382)
Q Consensus 180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~ 254 (382)
++.+. ..+......... ...+++++|||+|.+|+|+|..|.++|.+|+++.+.+.+.. ......+.|++.
T Consensus 157 ~~~~~---~~v~~~~~~~~~--~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~ 231 (466)
T PRK07845 157 AEPDG---ERILTWRQLYDL--DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARR 231 (466)
T ss_pred CCCCC---ceEEeehhhhcc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHC
Confidence 44321 111111111111 22368999999999999999999999999999998876532 122334667889
Q ss_pred CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCcC
Q 016820 255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHT 331 (382)
Q Consensus 255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t 331 (382)
||+++.++++.+++.++++ +.+.. .++.++++|.+++++|++|++..+ ..++.++++|++.||+ +++|
T Consensus 232 gV~i~~~~~v~~v~~~~~~-----~~v~~---~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~-~~~T 302 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDG-----VVVTL---TDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDR-VSRT 302 (466)
T ss_pred CcEEEcCCEEEEEEEeCCE-----EEEEE---CCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECC-Cccc
Confidence 9999999999999876543 33333 123579999999999999999853 2578888899999998 7889
Q ss_pred CCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
++|||||+|||++. +++++.|..||..++.++.
T Consensus 303 s~~~IyA~GD~~~~-~~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 303 SVPGIYAAGDCTGV-LPLASVAAMQGRIAMYHAL 335 (466)
T ss_pred CCCCEEEEeeccCC-ccchhHHHHHHHHHHHHHc
Confidence 99999999999974 6789999999999999986
No 28
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.2e-34 Score=280.55 Aligned_cols=287 Identities=23% Similarity=0.266 Sum_probs=208.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cCCCCC---CC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NFPGFP---QG 116 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~~~~~---~~ 116 (382)
.++|++|||+|++|+++|..|+++|.+|+||| +...+||.|....+.+ .+.+++ ..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie----~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIE----GADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEE----ccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 56899999999999999999999999999999 4446788776543211 111221 11
Q ss_pred CChHHHHHH-------H-----HHHHHHc-CcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCC
Q 016820 117 ILGGDLMDR-------C-----RNQSLRF-GTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFP 180 (382)
Q Consensus 117 ~~~~~~~~~-------~-----~~~~~~~-gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~ 180 (382)
.....+..+ + ...++.. +++++.+++..++ .+.+.+...+ .++.||+||+|||++|+.|++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~ 168 (479)
T PRK14727 91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD--GNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIP 168 (479)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec--CCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCC
Confidence 233333221 1 1222223 7899988876665 3456665433 2599999999999999999999
Q ss_pred CCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch----HHHHHHhccCCCc
Q 016820 181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS----KIMQNRALTNPKI 256 (382)
Q Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~----~~~~~~~l~~~gv 256 (382)
|.+....... ...... ...+++++|||+|.+|+|+|..|.++|.+|+++.+...+... .....+.+++.||
T Consensus 169 G~~~~~~~~~--~~~l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV 243 (479)
T PRK14727 169 GLMDTPYWTS--TEALFS---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGI 243 (479)
T ss_pred CcCccceecc--hHHhcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCC
Confidence 9754111110 011111 224689999999999999999999999999999886433221 1222456778899
Q ss_pred EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCC
Q 016820 257 DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSV 333 (382)
Q Consensus 257 ~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~ 333 (382)
+++.++++.+++.++++ +.+.. .+ .++++|.+++++|.+|++..+. .++.++++|++.||+ .++|++
T Consensus 244 ~i~~~~~V~~i~~~~~~-----~~v~~---~~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~-~~~Ts~ 313 (479)
T PRK14727 244 EVLNNTQASLVEHDDNG-----FVLTT---GH-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNP-AMETSA 313 (479)
T ss_pred EEEcCcEEEEEEEeCCE-----EEEEE---cC-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECC-CeecCC
Confidence 99999999999876543 44443 22 2589999999999999998643 467788899999999 688999
Q ss_pred CceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 334 PGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 334 ~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
|||||+|||++. +..++.|..+|+.+|.+|.
T Consensus 314 ~~IyA~GD~~~~-~~~~~~A~~~G~~aa~~i~ 344 (479)
T PRK14727 314 PDIYAAGDCSDL-PQFVYVAAAAGSRAGINMT 344 (479)
T ss_pred CCEEEeeecCCc-chhhhHHHHHHHHHHHHHc
Confidence 999999999974 5778899999999999986
No 29
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=7.8e-35 Score=280.45 Aligned_cols=291 Identities=20% Similarity=0.223 Sum_probs=211.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccC----CCCCCCcceecCCCccc---------------CC--CC-
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMA----NDIAPGGQLTTTSDVEN---------------FP--GF- 113 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~----~~~~~gg~~~~~~~~~~---------------~~--~~- 113 (382)
.++||+|||+|++|..+|..++++ |.+|+|||+... ....+||.|....+.+. .. ++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 468999999999999999999997 999999995210 01368888775543311 01 11
Q ss_pred ----CCCCChHHHHHHH-----------HHHHHH-cCcEEEEeeEEEEEecCCcEEEEEC-------CeEEEcCEEEEcc
Q 016820 114 ----PQGILGGDLMDRC-----------RNQSLR-FGTQIFTETVSKVDFKSRPFKVFTD-------SKSVLADTVIVAT 170 (382)
Q Consensus 114 ----~~~~~~~~~~~~~-----------~~~~~~-~gi~~~~~~v~~i~~~~~~~~v~~~-------~~~~~~d~lvlA~ 170 (382)
...++...+.++. .+.+++ .|++++.++...++ ++.+.+... ...+.||+||+||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~~~~~~~~~~d~lIIAT 159 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPKSAVKERLQAEHILLAT 159 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCCCCcceEEECCEEEEec
Confidence 0112333333332 223344 38999999876555 445666431 2369999999999
Q ss_pred CCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhc---CCEEEEEEeCCCCcc-----
Q 016820 171 GAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKY---GSKVYIIHRRDSFRA----- 242 (382)
Q Consensus 171 G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~---g~~v~~~~~~~~~~~----- 242 (382)
|++|..|++||.+..+.. ... ... ...+++++|||+|.+|+|+|..+..+ |.+|+++++.+.+..
T Consensus 160 Gs~p~~p~i~G~~~~~~~--~~~---~~~--~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~ 232 (486)
T TIGR01423 160 GSWPQMLGIPGIEHCISS--NEA---FYL--DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDST 232 (486)
T ss_pred CCCCCCCCCCChhheech--hhh---hcc--ccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHH
Confidence 999999999987543211 111 111 23478999999999999999877655 899999999887532
Q ss_pred hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCC
Q 016820 243 SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSD 319 (382)
Q Consensus 243 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~ 319 (382)
......+.|++.||+++.++.+.+++.++++ ...+.+.+ + .++++|.+++++|++|++..+. .++.++++
T Consensus 233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~--~~~v~~~~---g--~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~ 305 (486)
T TIGR01423 233 LRKELTKQLRANGINIMTNENPAKVTLNADG--SKHVTFES---G--KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKK 305 (486)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc--eEEEEEcC---C--CEEEcCEEEEeeCCCcCcccCCchhhCceECCC
Confidence 1222345678899999999999999876443 12233322 3 4799999999999999998653 56788889
Q ss_pred CceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 320 GYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 320 g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
|++.||+ +++|+.|||||+|||++. +..++.|++||+.+|.||.
T Consensus 306 G~I~Vd~-~l~Ts~~~IyA~GDv~~~-~~l~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 306 GAIQVDE-FSRTNVPNIYAIGDVTDR-VMLTPVAINEGAAFVDTVF 349 (486)
T ss_pred CCEecCC-CCcCCCCCEEEeeecCCC-cccHHHHHHHHHHHHHHHh
Confidence 9999999 678999999999999974 5788999999999999996
No 30
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=7e-35 Score=288.65 Aligned_cols=286 Identities=24% Similarity=0.285 Sum_probs=210.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cC-CCCC---C
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NF-PGFP---Q 115 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~-~~~~---~ 115 (382)
..+||+|||||++|+.+|..|+++|.+|+|||+ . .+||+|....+.+ .+ .+++ .
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~----~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~ 171 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIER----G-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP 171 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEec----C-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCC
Confidence 358999999999999999999999999999994 3 6788775443221 11 1221 1
Q ss_pred CCChHHHHHHHH------------HHHHHc-CcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCC
Q 016820 116 GILGGDLMDRCR------------NQSLRF-GTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQF 179 (382)
Q Consensus 116 ~~~~~~~~~~~~------------~~~~~~-gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~ 179 (382)
......+.++.. ..+++. +++++.+++..++. +.+.+...+ .+++||+||+|||++|+.|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i 249 (561)
T PRK13748 172 TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDD--QTLIVRLNDGGERVVAFDRCLIATGASPAVPPI 249 (561)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecC--CEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence 233444443322 223344 79999998887764 355565432 259999999999999999999
Q ss_pred CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhccCCC
Q 016820 180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALTNPK 255 (382)
Q Consensus 180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~~~g 255 (382)
||.+...... ...... . ...+++++|||+|.+|+|+|..|.++|.+|+++.+...+.. ......+.+++.|
T Consensus 250 ~g~~~~~~~~--~~~~~~-~--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~g 324 (561)
T PRK13748 250 PGLKETPYWT--STEALV-S--DTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEG 324 (561)
T ss_pred CCCCccceEc--cHHHhh-c--ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCC
Confidence 9976411100 001011 1 23468999999999999999999999999999998654321 1122346678899
Q ss_pred cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCC
Q 016820 256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTS 332 (382)
Q Consensus 256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~ 332 (382)
|+++.++.+.+++.++++ +.+.. .+ .++++|.+++++|.+|++..+. .++.++++|++.||+ +++|+
T Consensus 325 I~i~~~~~v~~i~~~~~~-----~~v~~---~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~-~~~Ts 394 (561)
T PRK13748 325 IEVLEHTQASQVAHVDGE-----FVLTT---GH-GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQ-GMRTS 394 (561)
T ss_pred CEEEcCCEEEEEEecCCE-----EEEEe---cC-CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECC-CcccC
Confidence 999999999999876542 34433 12 2599999999999999998642 578888899999998 78899
Q ss_pred CCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
.|||||+|||++. +..++.|..+|+.+|.||.
T Consensus 395 ~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 395 VPHIYAAGDCTDQ-PQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred CCCEEEeeecCCC-ccchhHHHHHHHHHHHHHc
Confidence 9999999999974 5788899999999999996
No 31
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=2.9e-35 Score=283.68 Aligned_cols=288 Identities=22% Similarity=0.259 Sum_probs=208.2
Q ss_pred ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcccCCCCCC--CCChHHHHHHHHHHHHHcC
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ--GILGGDLMDRCRNQSLRFG 134 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g 134 (382)
++|||||||++|+++|..|++++ .+|+|||+.. ..+ +. ... ++.+.. .....++..+..+.+.+.|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~----~~~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g 70 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD----IVS--FG-ACG---LPYFVGGFFDDPNTMIARTPEEFIKSG 70 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC----cce--ee-cCC---CceEeccccCCHHHhhcCCHHHHHHCC
Confidence 37999999999999999999985 5899999532 111 00 000 111111 1123344555556677889
Q ss_pred cEEEEe-eEEEEEecCCcEEEEE--CCeEEE--cCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCC
Q 016820 135 TQIFTE-TVSKVDFKSRPFKVFT--DSKSVL--ADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDK 206 (382)
Q Consensus 135 i~~~~~-~v~~i~~~~~~~~v~~--~~~~~~--~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~ 206 (382)
++++.+ +|..|+++++.+.+.. ++..+. ||+||+|||++|+.|+++|.+. +...................++
T Consensus 71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~ 150 (444)
T PRK09564 71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIK 150 (444)
T ss_pred CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCC
Confidence 998876 7999999888887764 244566 9999999999999999988753 1111111111111111122468
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK 280 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~ 280 (382)
+++|+|+|.+|+|+|..|.+.|.+|+++.+.+.+.. . ....++.+++.||+++.++++.++..++. +..+.
T Consensus 151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~---~~~v~ 227 (444)
T PRK09564 151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDK---VEGVV 227 (444)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCc---EEEEE
Confidence 999999999999999999999999999998875422 1 12234567789999999999999976442 22222
Q ss_pred EEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---------hhhHH
Q 016820 281 VKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---------KYRQA 350 (382)
Q Consensus 281 ~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---------~~~~~ 350 (382)
.+ + ..+++|.+++|+|.+|+.++++ .++.++++|++.||+ .++|++|||||+|||+.. .++.+
T Consensus 228 ~~----~--~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~ 300 (444)
T PRK09564 228 TD----K--GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDE-YGETSIENIYAAGDCATIYNIVSNKNVYVPLA 300 (444)
T ss_pred eC----C--CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECC-CcccCCCCEEEeeeEEEEEeccCCCeeeccch
Confidence 21 2 3599999999999999988776 567777889999998 678999999999999863 14678
Q ss_pred HHHHhhHHHHHHHHHH
Q 016820 351 VTAAGTGCMAALEAEH 366 (382)
Q Consensus 351 ~~a~~~g~~aa~~i~~ 366 (382)
+.|+.||+.+|.||..
T Consensus 301 ~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 301 TTANKLGRMVGENLAG 316 (444)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8999999999999874
No 32
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.1e-34 Score=277.51 Aligned_cols=290 Identities=26% Similarity=0.300 Sum_probs=210.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc---------------ccCCCC-----CCC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV---------------ENFPGF-----PQG 116 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~---------------~~~~~~-----~~~ 116 (382)
..+||+|||||++|+++|..|++.|.+|+|||+ ...||.+....+. .+++.+ ...
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-----~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~ 76 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-----GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPK 76 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-----CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence 458999999999999999999999999999994 3567776532211 111111 124
Q ss_pred CChHHHHHHHHHHH------------HHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc
Q 016820 117 ILGGDLMDRCRNQS------------LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA 184 (382)
Q Consensus 117 ~~~~~~~~~~~~~~------------~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~ 184 (382)
..+.++.+++++.. ...+++++.+++..++. ..+.+ ++.++.||+||+|||++ .|.+||...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v--~~~~~~~d~lIiATGs~--~p~ipg~~~ 150 (460)
T PRK06292 77 IDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEV--NGERIEAKNIVIATGSR--VPPIPGVWL 150 (460)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEE--CcEEEEeCEEEEeCCCC--CCCCCCCcc
Confidence 55666665554432 33477888777666553 23333 66779999999999999 445666543
Q ss_pred ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEE
Q 016820 185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVI 259 (382)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~ 259 (382)
.....+..+...... ...+++++|||+|.+|+|+|..|.++|.+|+++++.+.+.. .....++.+++. |+++
T Consensus 151 ~~~~~~~~~~~~~~~--~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~ 227 (460)
T PRK06292 151 ILGDRLLTSDDAFEL--DKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIK 227 (460)
T ss_pred cCCCcEECchHHhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEE
Confidence 222222222222222 23578999999999999999999999999999999887632 112224557777 9999
Q ss_pred cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCce
Q 016820 260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGV 336 (382)
Q Consensus 260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~v 336 (382)
++.++.+++.+++. .+.+.. .++++.++++|.+++++|.+|+...+. .++.++++|++.||+ .++|+.|||
T Consensus 228 ~~~~v~~i~~~~~~----~v~~~~-~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~-~~~ts~~~I 301 (460)
T PRK06292 228 LGAKVTSVEKSGDE----KVEELE-KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDE-HTQTSVPGI 301 (460)
T ss_pred cCCEEEEEEEcCCc----eEEEEE-cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECC-CcccCCCCE
Confidence 99999999876531 144421 124456799999999999999998543 567788899999999 788999999
Q ss_pred EEecccCCchhhHHHHHHhhHHHHHHHHHHH
Q 016820 337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEHY 367 (382)
Q Consensus 337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~ 367 (382)
||+|||++. ++.+..|+.||+.+|.+|...
T Consensus 302 yA~GD~~~~-~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 302 YAAGDVNGK-PPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred EEEEecCCC-ccchhHHHHHHHHHHHHhcCC
Confidence 999999974 568899999999999999753
No 33
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=2.1e-35 Score=277.51 Aligned_cols=294 Identities=20% Similarity=0.229 Sum_probs=214.6
Q ss_pred cEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCcccCCCCCC-CCChHHHHHHHHHHHHHcCc
Q 016820 60 KVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ-GILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gi 135 (382)
+|||||||+||+.+|..|+++ +.+|+|||++... .+.. .++.+.. .....++...+.+.++++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~--------~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT--------PYSG---MLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC--------cccc---hhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 589999999999999999654 6899999953111 0000 1111111 23456677777788888899
Q ss_pred EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccc--cCCCcceeee----ccCCCC-CCCCCcE
Q 016820 136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAF--WNRGISACAV----CDGAAP-IFRDKPL 208 (382)
Q Consensus 136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~--~~~~~~~~~~----~~~~~~-~~~~~~v 208 (382)
+++.++|+.||.+++.+.+. ++.+++||+||+|||+.|..|.+||..+. ..+.+..... ...... ....+++
T Consensus 70 ~~~~~~v~~id~~~~~V~~~-~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 148 (364)
T TIGR03169 70 RFVIAEATGIDPDRRKVLLA-NRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRL 148 (364)
T ss_pred EEEEEEEEEEecccCEEEEC-CCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceE
Confidence 99999999999988755543 44579999999999999999999985441 1122111110 111100 1235799
Q ss_pred EEEcCCchHHHHHHHHhhc----C--CEEEEEEeCCCCc-----chHHHHHHhccCCCcEEEcCceeEEEEecCCceeee
Q 016820 209 AVIGGGDSAMEEANFLTKY----G--SKVYIIHRRDSFR-----ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLG 277 (382)
Q Consensus 209 ~VvG~G~~a~e~a~~l~~~----g--~~v~~~~~~~~~~-----~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 277 (382)
+|+|+|.+|+|+|..|.+. + .+|+++ +.+.+. ......++.+++.||+++.++.+.+++.+.
T Consensus 149 vVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~------ 221 (364)
T TIGR03169 149 AVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGA------ 221 (364)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCe------
Confidence 9999999999999999753 3 589998 444431 122333567888999999999999986442
Q ss_pred eEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcC-CCCceEEecccCCc----hhhHHHH
Q 016820 278 GLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHT-SVPGVFAAGDVQDK----KYRQAVT 352 (382)
Q Consensus 278 ~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t-~~~~vya~GD~~~~----~~~~~~~ 352 (382)
+.+.+ + .++++|.+++++|.+|+..+...++.++++|++.||+ ++++ ++|||||+|||+.. .++.+..
T Consensus 222 -v~~~~---g--~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~-~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~ 294 (364)
T TIGR03169 222 -LILAD---G--RTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDP-TLQSLSHPHVFAAGDCAVITDAPRPKAGVY 294 (364)
T ss_pred -EEeCC---C--CEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECC-ccccCCCCCEEEeeeeeecCCCCCCCchHH
Confidence 55543 3 5799999999999999876555677788899999998 5666 99999999999852 2567889
Q ss_pred HHhhHHHHHHHHHHHHHHccCcccccc
Q 016820 353 AAGTGCMAALEAEHYLQEIGSQEDKSE 379 (382)
Q Consensus 353 a~~~g~~aa~~i~~~l~~~~~~~~~~~ 379 (382)
|+.||+.+|+||.+.+.++++.++++.
T Consensus 295 A~~~g~~~a~ni~~~l~g~~~~~~~~~ 321 (364)
T TIGR03169 295 AVRQAPILAANLRASLRGQPLRPFRPQ 321 (364)
T ss_pred HHHhHHHHHHHHHHHhcCCCCCCCccc
Confidence 999999999999999998877666543
No 34
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=3.8e-34 Score=278.37 Aligned_cols=291 Identities=20% Similarity=0.208 Sum_probs=209.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC-----------------CCCC--CC
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-----------------PGFP--QG 116 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-----------------~~~~--~~ 116 (382)
..++||+|||||++|+.+|..++++|.+|+|||+. .+||+|....+.+.- .++. ..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-----~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~ 120 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-----YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFS 120 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-----cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCc
Confidence 36789999999999999999999999999999952 578876654433110 0111 11
Q ss_pred CChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEec------------------CCcEEEE------E-CCeE
Q 016820 117 ILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFK------------------SRPFKVF------T-DSKS 160 (382)
Q Consensus 117 ~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~------------------~~~~~v~------~-~~~~ 160 (382)
++...+.++ +.+.+++.|++++.++...+++. ++.+++. . ++.+
T Consensus 121 ~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 121 FNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 233332222 33444567999999976444311 1223332 1 3456
Q ss_pred EEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820 161 VLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240 (382)
Q Consensus 161 ~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~ 240 (382)
++||+||+|||++|+.|++||.+..+ .+. .......+++++|||+|.+|+|+|..|.++|++||++.+.+.+
T Consensus 201 i~ad~lVIATGS~P~~P~IpG~~~v~-----ts~---~~~~l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 201 IEGKNILIAVGNKPIFPDVKGKEFTI-----SSD---DFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred EECCEEEEecCCCCCCCCCCCceeEE-----EHH---HHhhccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 99999999999999999999865211 111 1111223789999999999999999999999999999998865
Q ss_pred cc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcc-cc
Q 016820 241 RA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG-QL 314 (382)
Q Consensus 241 ~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~-~~ 314 (382)
.. ......+.+++.||+++.+..+.+++.++++. +.+... +++..+++|.+++++|++|++..+.. ++
T Consensus 273 l~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~----v~v~~~--~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~ 346 (561)
T PTZ00058 273 LRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKN----LTIYLS--DGRKYEHFDYVIYCVGRSPNTEDLNLKAL 346 (561)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCc----EEEEEC--CCCEEEECCEEEECcCCCCCccccCcccc
Confidence 32 12223456778899999999999998765421 333221 22357999999999999999987752 22
Q ss_pred -cccCCCceeeCCCCCcCCCCceEEecccCCc---------------------------------hhhHHHHHHhhHHHH
Q 016820 315 -DLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---------------------------------KYRQAVTAAGTGCMA 360 (382)
Q Consensus 315 -~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---------------------------------~~~~~~~a~~~g~~a 360 (382)
..+++|+|.||+ +++|++|||||+|||++. .+..++.|..||+.+
T Consensus 347 ~~~~~~G~I~VDe-~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~a 425 (561)
T PTZ00058 347 NIKTPKGYIKVDD-NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLL 425 (561)
T ss_pred ceecCCCeEEECc-CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHH
Confidence 134689999998 788999999999999972 367889999999999
Q ss_pred HHHHHH
Q 016820 361 ALEAEH 366 (382)
Q Consensus 361 a~~i~~ 366 (382)
|.||..
T Consensus 426 a~ni~g 431 (561)
T PTZ00058 426 ADRLFG 431 (561)
T ss_pred HHHHhC
Confidence 999963
No 35
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.7e-34 Score=276.40 Aligned_cols=297 Identities=25% Similarity=0.292 Sum_probs=211.6
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecc--cCCCCCCCcceecCCCccc------------------CCCCC---
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGW--MANDIAPGGQLTTTSDVEN------------------FPGFP--- 114 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~--~~~~~~~gg~~~~~~~~~~------------------~~~~~--- 114 (382)
.+|++|||||++|+++|..+++.|.+|+|||++ .......||.|....+.+. ..+..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 589999999999999999999999999999951 1112456776654332110 00111
Q ss_pred CCCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEE--C-CeEEEcCEEEEccCCCCcCCCCC
Q 016820 115 QGILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFT--D-SKSVLADTVIVATGAVAKKLQFP 180 (382)
Q Consensus 115 ~~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~--~-~~~~~~d~lvlA~G~~~~~~~~~ 180 (382)
...+..++.++ +.+..+..+++++.+++..++.+.+.+++.. + +.+++||+||+|||++|+.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~ 163 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGV 163 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCC
Confidence 11233333332 2334455699999999888876554545443 2 34799999999999999754322
Q ss_pred CCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCC
Q 016820 181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNP 254 (382)
Q Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~ 254 (382)
+.+ ...++.+...... ...+++++|||+|.+|+|+|..|.++|.+|+++++.+.+.. ...+ .+.+++.
T Consensus 164 ~~~---~~~~~~~~~~~~~--~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~-~~~l~~~ 237 (475)
T PRK06327 164 PFD---NKIILDNTGALNF--TEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEA-AKAFTKQ 237 (475)
T ss_pred CCC---CceEECcHHHhcc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHH-HHHHHHc
Confidence 211 1222222222222 23468999999999999999999999999999999887632 2222 3557778
Q ss_pred CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcC
Q 016820 255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHT 331 (382)
Q Consensus 255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t 331 (382)
||+++.++++.+++.++++ + .+.+.+ .+++...+++|.+++++|.+|++..+. .++.++++|++.||+ .++|
T Consensus 238 gi~i~~~~~v~~i~~~~~~--v-~v~~~~-~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~T 312 (475)
T PRK06327 238 GLDIHLGVKIGEIKTGGKG--V-SVAYTD-ADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDD-HCRT 312 (475)
T ss_pred CcEEEeCcEEEEEEEcCCE--E-EEEEEe-CCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECC-CCcc
Confidence 9999999999999877653 1 233333 123335799999999999999998542 467788899999998 6889
Q ss_pred CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
+.|+|||+|||+.. +.+++.|..||..+|.+|..
T Consensus 313 s~~~VyA~GD~~~~-~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 313 NVPNVYAIGDVVRG-PMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CCCCEEEEEeccCC-cchHHHHHHHHHHHHHHHcC
Confidence 99999999999874 56899999999999999863
No 36
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-34 Score=279.01 Aligned_cols=292 Identities=22% Similarity=0.251 Sum_probs=203.7
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC------------C-------CC--CCC
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF------------P-------GF--PQG 116 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~------------~-------~~--~~~ 116 (382)
++||+||||||+|+++|..+++.|.+|+||| +...+||++....+.+.. . +. ...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE----~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~ 78 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVE----GRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPT 78 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEe----cCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCc
Confidence 4899999999999999999999999999999 334678876544322100 0 00 011
Q ss_pred CChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEEC-C--eEEEcCEEEEccCCCCcCCCCCCC
Q 016820 117 ILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD-S--KSVLADTVIVATGAVAKKLQFPGS 182 (382)
Q Consensus 117 ~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~-~--~~~~~d~lvlA~G~~~~~~~~~g~ 182 (382)
....++.++ +....++.+++++.++. .++. +.++.+..+ + .+++||+||+|||++|. ++||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~-~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~ipg~ 154 (466)
T PRK06115 79 LNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDG-VGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLPGV 154 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc-CCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CCCCC
Confidence 222322222 22334456899988875 3332 334555443 3 25999999999999985 35664
Q ss_pred ccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcE
Q 016820 183 DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKID 257 (382)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~ 257 (382)
.. ....+..+...... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ......+.|++.||+
T Consensus 155 ~~-~~~~~~~~~~~~~~--~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~ 231 (466)
T PRK06115 155 TI-DNQRIIDSTGALSL--PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMK 231 (466)
T ss_pred CC-CCCeEECHHHHhCC--ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCE
Confidence 32 11111111111111 23579999999999999999999999999999998876532 122234667788999
Q ss_pred EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCC
Q 016820 258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVP 334 (382)
Q Consensus 258 ~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~ 334 (382)
+++++++.+++.++++ + .+.+.....+++..+++|.|++++|++|++..+. .++..+++| +.+|+ .++|+.|
T Consensus 232 i~~~~~V~~i~~~~~~--v-~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~-~~~Ts~~ 306 (466)
T PRK06115 232 FKLGSKVTGATAGADG--V-SLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLAND-HHRTSVP 306 (466)
T ss_pred EEECcEEEEEEEcCCe--E-EEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECC-CeecCCC
Confidence 9999999999876543 1 2333322224456799999999999999998653 356666666 56887 7899999
Q ss_pred ceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 335 GVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 335 ~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
+|||+|||++. +..++.|..||+.+|+||..
T Consensus 307 ~IyA~GD~~~~-~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 307 GVWVIGDVTSG-PMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred CEEEeeecCCC-cccHHHHHHHHHHHHHHHcC
Confidence 99999999974 57899999999999999974
No 37
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=2.9e-34 Score=275.47 Aligned_cols=283 Identities=19% Similarity=0.256 Sum_probs=205.8
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC-----------------CCCC---CCC
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-----------------PGFP---QGI 117 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-----------------~~~~---~~~ 117 (382)
++|++|||+|++|..+|.. ..|.+|+|||+. ..||.|....+.+.- .+.. ..+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-----~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 73 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-----TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGV 73 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-----CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcC
Confidence 3799999999999998876 469999999952 577777655433210 1111 123
Q ss_pred ChHHHHHHHHH------------H-HHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc
Q 016820 118 LGGDLMDRCRN------------Q-SLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA 184 (382)
Q Consensus 118 ~~~~~~~~~~~------------~-~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~ 184 (382)
++.++.++... . +++.|++++.++...++ ++.+.+. ++.+++||+||+|||++|+.|++||.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~V~v~-~g~~~~~d~lViATGs~p~~p~i~g~~~ 150 (451)
T PRK07846 74 RWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIG--PKTLRTG-DGEEITADQVVIAAGSRPVIPPVIADSG 150 (451)
T ss_pred CHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEec--CCEEEEC-CCCEEEeCEEEEcCCCCCCCCCCCCcCC
Confidence 44444433211 1 34568999998877664 4444443 3457999999999999999999998653
Q ss_pred ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--hHHH---HHHhccCCCcEEE
Q 016820 185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--SKIM---QNRALTNPKIDVI 259 (382)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~---~~~~l~~~gv~~~ 259 (382)
.. .+........ ...+++++|||+|.+|+|+|..|.++|.+|+++.+.+.+.. ...+ ..+.+ +.+|+++
T Consensus 151 ~~---~~~~~~~~~l--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~ 224 (451)
T PRK07846 151 VR---YHTSDTIMRL--PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVR 224 (451)
T ss_pred cc---EEchHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEE
Confidence 21 1111111111 22468999999999999999999999999999999887631 1121 22333 4689999
Q ss_pred cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCce
Q 016820 260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGV 336 (382)
Q Consensus 260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~v 336 (382)
+++++.+++.++++ +.+.. .++.++++|.+++++|++|+++++. .++.++++|++.||+ +++|++|||
T Consensus 225 ~~~~v~~i~~~~~~-----v~v~~---~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~-~~~Ts~p~I 295 (451)
T PRK07846 225 LGRNVVGVSQDGSG-----VTLRL---DDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE-YQRTSAEGV 295 (451)
T ss_pred eCCEEEEEEEcCCE-----EEEEE---CCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECC-CcccCCCCE
Confidence 99999999876543 44433 2235799999999999999998863 467888899999999 688999999
Q ss_pred EEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
||+|||++. +..++.|.+||+.+|+||..
T Consensus 296 yA~GD~~~~-~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 296 FALGDVSSP-YQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred EEEeecCCC-ccChhHHHHHHHHHHHHHcC
Confidence 999999974 57889999999999999963
No 38
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=6.2e-34 Score=275.67 Aligned_cols=291 Identities=21% Similarity=0.256 Sum_probs=205.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc-----------------CCCCC---CC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN-----------------FPGFP---QG 116 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~-----------------~~~~~---~~ 116 (382)
..+||+||||||+|+++|..|+++|.+|+|||+ . .+||+|....+.+. ..+.. ..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~----~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEK----G-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA 77 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEc----c-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 468999999999999999999999999999994 2 57888765432211 00110 11
Q ss_pred CChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEec-----CCcEEEEECC---eEEEcCEEEEccCCCCcCC
Q 016820 117 ILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFK-----SRPFKVFTDS---KSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 117 ~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~-----~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~ 177 (382)
.....+.++ ..+.+++.+++++.++++.++++ ++.+.+.+++ .++.||+||+|||++|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~ 157 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL 157 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence 232222222 23445667999999999888865 3356666533 3699999999999998654
Q ss_pred CCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch-----HHHHHHhcc
Q 016820 178 QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS-----KIMQNRALT 252 (382)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~~~~l~ 252 (382)
+ +... ....+..+...... ...+++++|||+|++|+|+|..|.++|.+|+++++.+.+... .....+.++
T Consensus 158 p--~~~~-~~~~~~~~~~~~~~--~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~ 232 (472)
T PRK05976 158 P--GLPF-DGEYVISSDEALSL--ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLK 232 (472)
T ss_pred C--CCCC-CCceEEcchHhhCc--cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHH
Confidence 3 2221 01111111111111 224689999999999999999999999999999998865321 122235677
Q ss_pred CCCcEEEcCceeEEEEec-CCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCC
Q 016820 253 NPKIDVIWNSVVLEAYGE-GDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGT 328 (382)
Q Consensus 253 ~~gv~~~~~~~v~~i~~~-~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~ 328 (382)
+.||+++.++++.+++.. +++ +..+... +++..++++|.+++++|.+|+...+. .++.. ++|++.||+ .
T Consensus 233 ~~gI~i~~~~~v~~i~~~~~~~--~~~~~~~---~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~-~ 305 (472)
T PRK05976 233 KLGVRVVTGAKVLGLTLKKDGG--VLIVAEH---NGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDD-F 305 (472)
T ss_pred hcCCEEEeCcEEEEEEEecCCC--EEEEEEe---CCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECC-C
Confidence 889999999999999862 222 1112222 24445799999999999999987543 23333 468999998 7
Q ss_pred CcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 329 THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 329 ~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
++|+.|+|||+|||++. ++.+..|+.+|+.+|.+|.
T Consensus 306 l~ts~~~IyAiGD~~~~-~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 306 CQTKERHIYAIGDVIGE-PQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred cccCCCCEEEeeecCCC-cccHHHHHHHHHHHHHHHc
Confidence 88999999999999864 5789999999999999985
No 39
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=4.2e-34 Score=277.27 Aligned_cols=290 Identities=18% Similarity=0.211 Sum_probs=209.8
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc----CCCCCCCcceecCCCccc------------------CCCC--
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM----ANDIAPGGQLTTTSDVEN------------------FPGF-- 113 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~----~~~~~~gg~~~~~~~~~~------------------~~~~-- 113 (382)
.+||+||||||+|+++|..|+++|.+|+|||+.. .....+||+|....+.+. ..++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999521 111247888765433321 0011
Q ss_pred CCCCChHHHHHHHHHHHHH-----------cCcEEEEeeEEEEEecCCcEEEEEC--CeEEEcCEEEEccCCCCcCCC-C
Q 016820 114 PQGILGGDLMDRCRNQSLR-----------FGTQIFTETVSKVDFKSRPFKVFTD--SKSVLADTVIVATGAVAKKLQ-F 179 (382)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~-----------~gi~~~~~~v~~i~~~~~~~~v~~~--~~~~~~d~lvlA~G~~~~~~~-~ 179 (382)
+......++.+++....++ .+|+++.+++...+ ...+.+..+ ...++||+||+|||++|..|. +
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~--~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i 162 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD--EHTVSYGDNSQEETITAKYILIATGGRPSIPEDV 162 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc--CCEEEEeeCCCceEEECCEEEEecCCCCCCCCCC
Confidence 1135666776666554433 46777777765543 344555432 246999999999999999874 8
Q ss_pred CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhccCCC
Q 016820 180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALTNPK 255 (382)
Q Consensus 180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~~~g 255 (382)
||.+..... +...... ...+++++|||+|.+|+|+|..|.++|.+||++.+...+.. ......+.|++.|
T Consensus 163 ~G~~~~~~~----~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~G 236 (499)
T PTZ00052 163 PGAKEYSIT----SDDIFSL--SKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQG 236 (499)
T ss_pred CCccceeec----HHHHhhh--hcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcC
Confidence 886542111 1111111 22467999999999999999999999999999987543321 1223346678889
Q ss_pred cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCC
Q 016820 256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTS 332 (382)
Q Consensus 256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~ 332 (382)
|+++++..+.++...+++ ..+.+.+ + .++++|.+++++|++|++.++. .++.++++|++.+++. +|+
T Consensus 237 V~i~~~~~v~~v~~~~~~---~~v~~~~---g--~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts 306 (499)
T PTZ00052 237 TLFLEGVVPINIEKMDDK---IKVLFSD---G--TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTN 306 (499)
T ss_pred CEEEcCCeEEEEEEcCCe---EEEEECC---C--CEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCC
Confidence 999999999999876532 1233322 3 4689999999999999998763 4677888898878774 899
Q ss_pred CCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
.|+|||+|||+...+..++.|+++|+.+|.||.
T Consensus 307 ~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~ 339 (499)
T PTZ00052 307 IPNIFAVGDVVEGRPELTPVAIKAGILLARRLF 339 (499)
T ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHHHh
Confidence 999999999986456789999999999999996
No 40
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=6.2e-34 Score=274.86 Aligned_cols=295 Identities=18% Similarity=0.177 Sum_probs=210.4
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC----CCCCCCcceecCCCccc---------------CC--CCC--
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA----NDIAPGGQLTTTSDVEN---------------FP--GFP-- 114 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~----~~~~~gg~~~~~~~~~~---------------~~--~~~-- 114 (382)
++||+|||+|++|+.+|..++++|.+|+|||+... .....||.|....+.+. .. ++.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 58999999999999999999999999999995311 11247887664332210 00 111
Q ss_pred --CCCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEE-CC--eEEEcCEEEEccCCCCcCCC
Q 016820 115 --QGILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DS--KSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 115 --~~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lvlA~G~~~~~~~ 178 (382)
..++...+.++ ....++..|++++.+....+++ +.+.+.. ++ ..+.||+||+|||++|+.|+
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ 159 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNKKGKEKIYSAERFLIATGERPRYPG 159 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEeccCCCceEEEeCEEEEecCCCCCCCC
Confidence 11233333322 2334456799999998877764 3455543 22 36999999999999999999
Q ss_pred CCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhccCC
Q 016820 179 FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALTNP 254 (382)
Q Consensus 179 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~~~ 254 (382)
+||...... ........ ...+++++|||+|.+|+|+|..|.+.|.+|+++.+...++. .....++.|++.
T Consensus 160 ipG~~~~~~----~~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~ 233 (484)
T TIGR01438 160 IPGAKELCI----TSDDLFSL--PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEH 233 (484)
T ss_pred CCCccceee----cHHHhhcc--cccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHc
Confidence 998754211 11111111 22467899999999999999999999999999998533321 122234567888
Q ss_pred CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccC-CCceeeCCCCCc
Q 016820 255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHS-DGYIITKPGTTH 330 (382)
Q Consensus 255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~-~g~i~vd~~~~~ 330 (382)
||+++++..+.++...+++ ..+++.+ .++..++++|.+++++|++|++..+. .++.+++ +|++.||+ +++
T Consensus 234 gV~i~~~~~v~~v~~~~~~---~~v~~~~--~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~-~~~ 307 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAK---VKVTFTD--STNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADE-EEQ 307 (484)
T ss_pred CCEEEeCceEEEEEEcCCe---EEEEEec--CCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCC-Ccc
Confidence 9999999999999876542 1244433 11134799999999999999998643 4666765 59999998 788
Q ss_pred CCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 331 TSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 331 t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
|+.|+|||+|||+...+..++.|..||+.+|+||..
T Consensus 308 Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 308 TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 999999999999865567888999999999999963
No 41
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=2e-34 Score=277.85 Aligned_cols=294 Identities=29% Similarity=0.394 Sum_probs=216.6
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
...++|+|||||++|+++|..|++.|++|+|+| .....||.+.. ++|......++.++..+.+.++|+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie----~~~~~gG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv 205 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFE----ARDKAGGLLRY--------GIPEFRLPKDIVDREVERLLKLGV 205 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc----cCCCCCcEeec--------cCCCccCCHHHHHHHHHHHHHcCC
Confidence 346899999999999999999999999999999 44456666543 122223446777888888888999
Q ss_pred EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCcccc-CCCcceeeeccC---CCCCCCCCcEEE
Q 016820 136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFW-NRGISACAVCDG---AAPIFRDKPLAV 210 (382)
Q Consensus 136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~-~~~~~~~~~~~~---~~~~~~~~~v~V 210 (382)
+++.++.... . +..++..+.||+||+|||+. |+.+++||.+... ............ ......+++|+|
T Consensus 206 ~~~~~~~v~~-----~--v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvV 278 (457)
T PRK11749 206 EIRTNTEVGR-----D--ITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVV 278 (457)
T ss_pred EEEeCCEECC-----c--cCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEE
Confidence 9988854311 1 11122237899999999995 7777888865310 000000111000 011236899999
Q ss_pred EcCCchHHHHHHHHhhcCC-EEEEEEeCCC--CcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec---
Q 016820 211 IGGGDSAMEEANFLTKYGS-KVYIIHRRDS--FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL--- 284 (382)
Q Consensus 211 vG~G~~a~e~a~~l~~~g~-~v~~~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~--- 284 (382)
||+|.+|+|+|..+.+.|. +|+++++.+. ++...... +.+++.||++++++.+.++..++++ +.+|.+...
T Consensus 279 iGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~-~~~~~~GV~i~~~~~v~~i~~~~~~--~~~v~~~~~~~~ 355 (457)
T PRK11749 279 IGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEV-EHAKEEGVEFEWLAAPVEILGDEGR--VTGVEFVRMELG 355 (457)
T ss_pred ECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-HHHHHCCCEEEecCCcEEEEecCCc--eEEEEEEEEEec
Confidence 9999999999999999987 8999998754 23333333 4567789999999999999876543 234555422
Q ss_pred -----------cCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHH
Q 016820 285 -----------VTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAV 351 (382)
Q Consensus 285 -----------~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~ 351 (382)
.++++.++++|.|++++|++|+..++. .++.++++|++.+|+.+++|+.|+|||+|||+.. ++++.
T Consensus 356 ~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~-~~~~~ 434 (457)
T PRK11749 356 EPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG-AATVV 434 (457)
T ss_pred CcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC-chHHH
Confidence 123456899999999999999987654 3577888999999986789999999999999953 57899
Q ss_pred HHHhhHHHHHHHHHHHHHHcc
Q 016820 352 TAAGTGCMAALEAEHYLQEIG 372 (382)
Q Consensus 352 ~a~~~g~~aa~~i~~~l~~~~ 372 (382)
.|+.+|+.+|.+|.++|.++.
T Consensus 435 ~A~~~G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 435 WAVGDGKDAAEAIHEYLEGAA 455 (457)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998753
No 42
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=6.4e-35 Score=295.75 Aligned_cols=288 Identities=19% Similarity=0.245 Sum_probs=212.8
Q ss_pred cccEEEECCcHHHHHHHHHHHHc----CCCeEEEecccCCCCCCC-cceecCCCcccCCCCCCCCChHHHHHHHHHHHHH
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARA----ELKPILFEGWMANDIAPG-GQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR 132 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~lie~~~~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
+++|||||+|+||+.+|..|.++ +++|+||++.. ... .... ++.+......+++.....+++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~----~~~Y~r~~-------L~~~~~~~~~~~l~~~~~~~~~~ 71 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEP----RIAYDRVH-------LSSYFSHHTAEELSLVREGFYEK 71 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCC----CCcccCCc-------chHhHcCCCHHHccCCCHHHHHh
Confidence 35899999999999999999865 47999999531 111 1111 11111112334554445566778
Q ss_pred cCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcE
Q 016820 133 FGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPL 208 (382)
Q Consensus 133 ~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v 208 (382)
.|++++.+ .|..|+.+.+.+.. .++..+.||+||+|||++|+.|++||.+. +..+.+.+....... ...++++
T Consensus 72 ~gI~~~~g~~V~~Id~~~~~V~~-~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~--~~~~k~v 148 (847)
T PRK14989 72 HGIKVLVGERAITINRQEKVIHS-SAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEAC--ARRSKRG 148 (847)
T ss_pred CCCEEEcCCEEEEEeCCCcEEEE-CCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHH--HhcCCeE
Confidence 89999998 69999987654433 24557999999999999999999999764 222333333222222 2356899
Q ss_pred EEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE
Q 016820 209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK 282 (382)
Q Consensus 209 ~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~ 282 (382)
+|||+|.+|+|+|..|.++|.+|+++++.+.+.. .....++.+++.||+++++..+.+|..++.+. ...+.+.
T Consensus 149 vVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~-~~~v~~~ 227 (847)
T PRK14989 149 AVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEA-RKTMRFA 227 (847)
T ss_pred EEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCc-eEEEEEC
Confidence 9999999999999999999999999999887532 12334567888999999999999998654221 2234443
Q ss_pred eccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch---hhHHHHHHhhHH
Q 016820 283 NLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---YRQAVTAAGTGC 358 (382)
Q Consensus 283 ~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---~~~~~~a~~~g~ 358 (382)
+ + .++++|.+++++|.+|++.++. .++.++++|+|.||+ +++|++|||||+|||+... ...+..|..||+
T Consensus 228 d---G--~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~-~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~ 301 (847)
T PRK14989 228 D---G--SELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVIND-SCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQ 301 (847)
T ss_pred C---C--CEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECC-CCcCCCCCEEEeecceeEcCcccccHHHHHHHHH
Confidence 2 3 5799999999999999998775 578888999999998 7889999999999999642 346778888999
Q ss_pred HHHHHHHH
Q 016820 359 MAALEAEH 366 (382)
Q Consensus 359 ~aa~~i~~ 366 (382)
.+|.+|..
T Consensus 302 vaa~~i~g 309 (847)
T PRK14989 302 VAVDHLLG 309 (847)
T ss_pred HHHHHhcC
Confidence 88888753
No 43
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=2.4e-34 Score=271.08 Aligned_cols=284 Identities=19% Similarity=0.227 Sum_probs=206.0
Q ss_pred ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHH-HHHHHHHHcCc
Q 016820 59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMD-RCRNQSLRFGT 135 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi 135 (382)
++|||||||+||+.+|..|+++ ..+|+||++.... .+..+ .... .+.......++.. ...++++++|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~------~y~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~gv 73 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD------EYNKP-DLSH--VFSQGQRADDLTRQSAGEFAEQFNL 73 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC------CcCcC-cCcH--HHhCCCCHHHhhcCCHHHHHHhCCC
Confidence 5899999999999999999886 4689999853110 00000 0000 0112234445554 35566778899
Q ss_pred EEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc-ccCCCcceeeeccCCCCCCCCCcEEEEcC
Q 016820 136 QIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA-FWNRGISACAVCDGAAPIFRDKPLAVIGG 213 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~v~VvG~ 213 (382)
+++.+ +|+.++.+++. +.+++..+.||+||+|||++|..|+++|.+. +..+.+..+...... ...+++++|||+
T Consensus 74 ~~~~~~~V~~id~~~~~--v~~~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~--~~~~~~vvViGg 149 (377)
T PRK04965 74 RLFPHTWVTDIDAEAQV--VKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQ--LRDAQRVLVVGG 149 (377)
T ss_pred EEECCCEEEEEECCCCE--EEECCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHH--hhcCCeEEEECC
Confidence 99877 79999987764 4456778999999999999999999999754 111222222222222 335789999999
Q ss_pred CchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCC
Q 016820 214 GDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTG 287 (382)
Q Consensus 214 G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~ 287 (382)
|++|+|+|..|.+.+.+|+++++.+.+.. ......+.+++.||+++.++.+.++..++++ ..+.+.
T Consensus 150 G~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~---~~v~~~----- 221 (377)
T PRK04965 150 GLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSG---IRATLD----- 221 (377)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCE---EEEEEc-----
Confidence 99999999999999999999999886531 1222345677889999999999999886543 123332
Q ss_pred ceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch---hhHHHHHHhhHHHHHHH
Q 016820 288 QVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---YRQAVTAAGTGCMAALE 363 (382)
Q Consensus 288 ~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---~~~~~~a~~~g~~aa~~ 363 (382)
++.++++|.+++|+|.+|+..++. .++..+ + ++.||+ +++|+.|||||+|||+... ...+..|+.||+.+|+|
T Consensus 222 ~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~-gi~vd~-~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n 298 (377)
T PRK04965 222 SGRSIEVDAVIAAAGLRPNTALARRAGLAVN-R-GIVVDS-YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKN 298 (377)
T ss_pred CCcEEECCEEEECcCCCcchHHHHHCCCCcC-C-CEEECC-CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHH
Confidence 235799999999999999998775 455554 3 489998 7889999999999998532 23566789999999999
Q ss_pred HHH
Q 016820 364 AEH 366 (382)
Q Consensus 364 i~~ 366 (382)
|..
T Consensus 299 ~~g 301 (377)
T PRK04965 299 LLG 301 (377)
T ss_pred hcC
Confidence 864
No 44
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=6.6e-34 Score=290.90 Aligned_cols=290 Identities=25% Similarity=0.327 Sum_probs=219.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||||||||+||..|++.|++|+|+| .....||.+.+ ++|......++.++..+.+++.|++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE----~~~~~GG~l~y--------GIP~~rlp~~vi~~~i~~l~~~Gv~ 372 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFE----AFHDLGGVLRY--------GIPEFRLPNQLIDDVVEKIKLLGGR 372 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEe----eCCCCCceEEc--------cCCCCcChHHHHHHHHHHHHhhcCe
Confidence 46899999999999999999999999999999 55678888764 4555566778888888888999999
Q ss_pred EEEeeEEEEEecCCcEEEEECC-eEEEcCEEEEccCC-CCcCCCCCCCccccCCCccee-eec----------c---CCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGA-VAKKLQFPGSDAFWNRGISAC-AVC----------D---GAA 200 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~-~~~~~~~~g~~~~~~~~~~~~-~~~----------~---~~~ 200 (382)
++.+.....+ +..++ ....||+||+|||+ .|+.+++||.+. ..++.. .+. . ...
T Consensus 373 f~~n~~vG~d-------it~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl---~GV~~a~dfL~~~~~~~~~~~~~~~~~ 442 (944)
T PRK12779 373 FVKNFVVGKT-------ATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHL---LGVMSANEFLTRVNLMRGLDDDYETPL 442 (944)
T ss_pred EEEeEEeccE-------EeHHHhccccCCEEEEeCCCCCCCcCCCCCCcC---cCcEEHHHHHHHHHhhccccccccccc
Confidence 9988643322 22222 23579999999999 589999999764 111110 000 0 010
Q ss_pred CCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC--CcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820 201 PIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS--FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG 278 (382)
Q Consensus 201 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~ 278 (382)
....+++|+|||+|++|+++|..+.++|.+|+++++++. ++......+.. .++||+++++..+.++..++++..+.+
T Consensus 443 ~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a-~eeGV~~~~~~~p~~i~~d~~~~~V~~ 521 (944)
T PRK12779 443 PEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHA-LEEGINLAVLRAPREFIGDDHTHFVTH 521 (944)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHH-HHCCCEEEeCcceEEEEecCCCCEEEE
Confidence 123579999999999999999999999999999998764 23233333333 357999999999999987654433554
Q ss_pred EEEEec--------------cCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEeccc
Q 016820 279 LKVKNL--------------VTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342 (382)
Q Consensus 279 v~~~~~--------------~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~ 342 (382)
+++..+ .+++...+++|.||+++|++|+..+.. .++..+++|.+.+|+..++|+.|+|||+|||
T Consensus 522 v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~ 601 (944)
T PRK12779 522 ALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDA 601 (944)
T ss_pred EEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcC
Confidence 444210 124446799999999999999876543 3577888999999987789999999999999
Q ss_pred CCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 343 QDKKYRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 343 ~~~~~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
+.. +.++..|+.+|+.||.+|.++|.-
T Consensus 602 ~~G-~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 602 ARG-GSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred CCC-hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 974 568999999999999999999874
No 45
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.1e-33 Score=273.76 Aligned_cols=288 Identities=24% Similarity=0.304 Sum_probs=210.1
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------C--CCC---CCCCC
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------F--PGF---PQGIL 118 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~--~~~---~~~~~ 118 (382)
+||+|||||++|+++|..|++.|.+|+||| + ..+||++....+.+. . .++ .....
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie----~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 76 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVE----K-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVD 76 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEe----c-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCC
Confidence 799999999999999999999999999999 4 467887664332111 0 011 01122
Q ss_pred hHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCCcCCCCC-CCcc
Q 016820 119 GGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVAKKLQFP-GSDA 184 (382)
Q Consensus 119 ~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~~~~~~~-g~~~ 184 (382)
...+.++ +....++.+++++.+++..++ .+.+.+...+ .+++||+||+|||++|+.|++| +.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~ 154 (461)
T TIGR01350 77 WEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLD--PGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDG 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCC
Confidence 3333322 223445668999999877665 4456665543 4699999999999999888775 3221
Q ss_pred ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEE
Q 016820 185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVI 259 (382)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~ 259 (382)
..+..+...... ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+.. ......+.+++.||+++
T Consensus 155 ---~~~~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~ 229 (461)
T TIGR01350 155 ---EVVITSTGALNL--KEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKIL 229 (461)
T ss_pred ---ceEEcchHHhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 112222211121 23468999999999999999999999999999999886532 12222456778899999
Q ss_pred cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChh--hhc-ccccccCCCceeeCCCCCcCCCCce
Q 016820 260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK--FVD-GQLDLHSDGYIITKPGTTHTSVPGV 336 (382)
Q Consensus 260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~--~~~-~~~~~~~~g~i~vd~~~~~t~~~~v 336 (382)
.++++.+++.++++ +.+... .++...+++|.+++++|.+|+.. .+. .++..+++|++.||+ +++|+.|+|
T Consensus 230 ~~~~v~~i~~~~~~-----v~v~~~-~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-~l~t~~~~I 302 (461)
T TIGR01350 230 TNTKVTAVEKNDDQ-----VVYENK-GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDE-YMRTNVPGI 302 (461)
T ss_pred eCCEEEEEEEeCCE-----EEEEEe-CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCC-CcccCCCCE
Confidence 99999999876543 444331 13335799999999999999988 333 567788899999998 788999999
Q ss_pred EEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
||+|||+.. +..+..|+.||+.+|.+|..
T Consensus 303 yaiGD~~~~-~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 303 YAIGDVIGG-PMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred EEeeecCCC-cccHHHHHHHHHHHHHHHcC
Confidence 999999974 57899999999999999974
No 46
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.5e-34 Score=273.22 Aligned_cols=284 Identities=21% Similarity=0.264 Sum_probs=206.3
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cCCCCC-----CCC
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NFPGFP-----QGI 117 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~~~~~-----~~~ 117 (382)
+|+|||||++|+.+|..+++.|.+|+|||+. ..||.|....+.+ ...+.+ ...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-----~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 76 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-----DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISI 76 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-----cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCcc
Confidence 7999999999999999999999999999953 3666665432221 000111 123
Q ss_pred ChHHHHHHH-----------HHHHHHcCcEEEEeeEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCCcCCCCCCCcc
Q 016820 118 LGGDLMDRC-----------RNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVAKKLQFPGSDA 184 (382)
Q Consensus 118 ~~~~~~~~~-----------~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~~~~~~~g~~~ 184 (382)
+...+..+. ...+++.+++++.+++..++ ++.+.+..++ .+++||+||+|||++|+.+++++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~ 154 (458)
T PRK06912 77 DWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFET--DHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDG 154 (458)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcc--CCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCC
Confidence 344443332 22344568999999887776 4455565433 36999999999999998877776543
Q ss_pred ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch-----HHHHHHhccCCCcEEE
Q 016820 185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS-----KIMQNRALTNPKIDVI 259 (382)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~~~~l~~~gv~~~ 259 (382)
. .+..+...... ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+... .....+.+++.||+++
T Consensus 155 ~---~v~~~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~ 229 (458)
T PRK06912 155 K---WIINSKHAMSL--PSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIF 229 (458)
T ss_pred C---eEEcchHHhCc--cccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEE
Confidence 1 11112211222 234689999999999999999999999999999998876321 1222456778899999
Q ss_pred cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCce
Q 016820 260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGV 336 (382)
Q Consensus 260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~v 336 (382)
+++++.+++.++.. +.+.. +++..++++|.+++++|.+|+...+. .++..+++| +.||+ .++|+.|||
T Consensus 230 ~~~~V~~i~~~~~~-----v~~~~--~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~-~~~ts~~~V 300 (458)
T PRK06912 230 TGAALKGLNSYKKQ-----ALFEY--EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNE-HMQTNVPHI 300 (458)
T ss_pred ECCEEEEEEEcCCE-----EEEEE--CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCC-CeecCCCCE
Confidence 99999999876542 44443 23335799999999999999987542 356666666 99998 788999999
Q ss_pred EEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 337 FAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
||+|||.+ .++.++.|+.+|+.+|.++.
T Consensus 301 yA~GD~~~-~~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 301 YACGDVIG-GIQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred EEEeecCC-CcccHHHHHHHHHHHHHHHc
Confidence 99999997 36789999999999999985
No 47
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5e-34 Score=275.92 Aligned_cols=289 Identities=23% Similarity=0.274 Sum_probs=202.3
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC------------------CCCC--CCC
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF------------------PGFP--QGI 117 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~------------------~~~~--~~~ 117 (382)
.+||+|||||++|+++|..|+++|.+|+|||+. ..||.+....+.+.. .+.. ...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-----~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~ 78 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-----YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTF 78 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-----CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCccc
Confidence 489999999999999999999999999999952 567776654332110 0000 011
Q ss_pred ChHHHHHHH-----------HHHHHHcCcEEEEeeEEEEEecCCcEEEEEC-C--eEEEcCEEEEccCCCCcCCCCCCCc
Q 016820 118 LGGDLMDRC-----------RNQSLRFGTQIFTETVSKVDFKSRPFKVFTD-S--KSVLADTVIVATGAVAKKLQFPGSD 183 (382)
Q Consensus 118 ~~~~~~~~~-----------~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~-~--~~~~~d~lvlA~G~~~~~~~~~g~~ 183 (382)
....+..+. ....+..+++.+.++...++ .+.+.+... + .+++||+||+|||++|+.+ ||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~--pg~~ 154 (466)
T PRK07818 79 DYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTD--ANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PGTS 154 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcC--CCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC--CCCC
Confidence 222222221 11222346777766544444 445555532 2 3599999999999999764 5543
Q ss_pred cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEE
Q 016820 184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDV 258 (382)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~ 258 (382)
.. .. +.... ........+++++|||+|.+|+|+|..|.++|.+|+++.+.+.+.. ......+.+++.||++
T Consensus 155 ~~-~~-v~~~~--~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i 230 (466)
T PRK07818 155 LS-EN-VVTYE--EQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKI 230 (466)
T ss_pred CC-Cc-EEchH--HHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEE
Confidence 10 11 11111 1111123468999999999999999999999999999998876532 1222345677889999
Q ss_pred EcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCcCCCCc
Q 016820 259 IWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHTSVPG 335 (382)
Q Consensus 259 ~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~ 335 (382)
++++++.+++.++++ ..+.+.. .+++...+++|.+++++|++|++..+ ..++.++++|++.||+ +++|+.|+
T Consensus 231 ~~~~~v~~i~~~~~~---~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~-~~~Ts~p~ 305 (466)
T PRK07818 231 LTGTKVESIDDNGSK---VTVTVSK-KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDD-YMRTNVPH 305 (466)
T ss_pred EECCEEEEEEEeCCe---EEEEEEe-cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCC-CcccCCCC
Confidence 999999999876542 1233431 12444579999999999999999854 2567788889999998 78899999
Q ss_pred eEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820 336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365 (382)
Q Consensus 336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~ 365 (382)
|||+|||++. +++++.|+.||+.+|.||+
T Consensus 306 IyAiGD~~~~-~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 306 IYAIGDVTAK-LQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred EEEEeecCCC-cccHhHHHHHHHHHHHHHc
Confidence 9999999974 6799999999999999996
No 48
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-35 Score=253.16 Aligned_cols=304 Identities=34% Similarity=0.556 Sum_probs=268.5
Q ss_pred ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820 55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG 134 (382)
Q Consensus 55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 134 (382)
....+||+||||||||-++|.+.+|.|.+.-|+-. ..||+..-+-.+.+|-..| ...++.+...+++..+++.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae------rfGGQvldT~~IENfIsv~-~teGpkl~~ale~Hv~~Y~ 280 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE------RFGGQVLDTMGIENFISVP-ETEGPKLAAALEAHVKQYD 280 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh------hhCCeeccccchhheeccc-cccchHHHHHHHHHHhhcC
Confidence 34579999999999999999999999999877742 6788888787888887665 3577889999999999999
Q ss_pred cEEEEe-eEEEEEec---CCcEEEEECC-eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEE
Q 016820 135 TQIFTE-TVSKVDFK---SRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLA 209 (382)
Q Consensus 135 i~~~~~-~v~~i~~~---~~~~~v~~~~-~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 209 (382)
+++... +++.+.+. ++.+.++..+ -.+.++.+|++||.+=+...+||.++|..+.+.+|+.|++. .+.+|+|+
T Consensus 281 vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGP--LF~gK~VA 358 (520)
T COG3634 281 VDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP--LFKGKRVA 358 (520)
T ss_pred chhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCc--ccCCceEE
Confidence 998777 67777764 3445666644 46899999999999888889999999999999999999999 89999999
Q ss_pred EEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCce
Q 016820 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV 289 (382)
Q Consensus 210 VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~ 289 (382)
|||+|++|+|.|-.|+-.-.+||++.-.+.+....-+++++..-.+++++.+..-++|..+++. +.++...+..+++.
T Consensus 359 VIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~k--V~Gl~Y~dr~sge~ 436 (520)
T COG3634 359 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDK--VTGLEYRDRVSGEE 436 (520)
T ss_pred EECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhcCCCcEEEecceeeEEecCCce--ecceEEEeccCCce
Confidence 9999999999999999877899999999999888888877777889999999999999998653 77788888777878
Q ss_pred EEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHH
Q 016820 290 SDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQ 369 (382)
Q Consensus 290 ~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~ 369 (382)
..+.-+-|+.-.|..||+.+++..+.+++.|-|.||. ...|+.|+|||+|||...+++++..++..|..|+...-.||.
T Consensus 437 ~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~-~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyLI 515 (520)
T COG3634 437 HHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDA-RGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYLI 515 (520)
T ss_pred eEEEeeeeEEEEecccChhHhhchhhcCcCccEEEec-CCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhhe
Confidence 8899999999999999999999778999999999999 899999999999999998899999999999999999998887
Q ss_pred H
Q 016820 370 E 370 (382)
Q Consensus 370 ~ 370 (382)
.
T Consensus 516 R 516 (520)
T COG3634 516 R 516 (520)
T ss_pred e
Confidence 6
No 49
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=272.24 Aligned_cols=285 Identities=17% Similarity=0.170 Sum_probs=196.8
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
.++|||||||+||+++|..|+++|. +|+|++++.... ....... ..+...+ ..+.....-.+...+.++
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~---y~r~~l~---~~~~~~~---~~~~~~~~~~~~~~~~~i 73 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP---YERPPLS---KSMLLED---SPQLQQVLPANWWQENNV 73 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC---CCCCCCC---HHHHCCC---CccccccCCHHHHHHCCC
Confidence 4689999999999999999999976 799999531110 0000000 0000000 000000001233456799
Q ss_pred EEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEEE
Q 016820 136 QIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVI 211 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~Vv 211 (382)
+++.+ .|..++.+++.+.+. ++..+.||+||+|||++|+.+++++... +..+...+....... ...+++++||
T Consensus 74 ~~~~g~~V~~id~~~~~v~~~-~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~--~~~~~~vvVi 150 (396)
T PRK09754 74 HLHSGVTIKTLGRDTRELVLT-NGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREV--LQPERSVVIV 150 (396)
T ss_pred EEEcCCEEEEEECCCCEEEEC-CCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHH--hhcCCeEEEE
Confidence 99988 699999887655443 4567999999999999998777665432 111222222222222 2357899999
Q ss_pred cCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc
Q 016820 212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV 285 (382)
Q Consensus 212 G~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~ 285 (382)
|+|.+|+|+|..|.+.|.+||++++.+.+.. . .....+.+++.||+++.++.+.+++.++. +.+..
T Consensus 151 GgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~------~~v~l-- 222 (396)
T PRK09754 151 GAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEK------VELTL-- 222 (396)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCE------EEEEE--
Confidence 9999999999999999999999999886531 1 12233556778999999999999987321 23332
Q ss_pred CCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch--------hhHHHHHHhh
Q 016820 286 TGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK--------YRQAVTAAGT 356 (382)
Q Consensus 286 ~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~--------~~~~~~a~~~ 356 (382)
.++..+++|.+++++|.+|++.++. .++. .++++.||+ +++|++|||||+|||+..+ ...+..|..|
T Consensus 223 -~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~--~~~gi~vd~-~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~q 298 (396)
T PRK09754 223 -QSGETLQADVVIYGIGISANDQLAREANLD--TANGIVIDE-ACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQ 298 (396)
T ss_pred -CCCCEEECCEEEECCCCChhhHHHHhcCCC--cCCCEEECC-CCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHH
Confidence 2235799999999999999988765 3443 346799998 6889999999999998521 2456889999
Q ss_pred HHHHHHHHHH
Q 016820 357 GCMAALEAEH 366 (382)
Q Consensus 357 g~~aa~~i~~ 366 (382)
|+.+|+||..
T Consensus 299 g~~aa~ni~g 308 (396)
T PRK09754 299 AQIAAAAMLG 308 (396)
T ss_pred HHHHHHHhcC
Confidence 9999999974
No 50
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=5.6e-33 Score=273.52 Aligned_cols=295 Identities=20% Similarity=0.223 Sum_probs=205.4
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc---------------cC-----CCC----
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE---------------NF-----PGF---- 113 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~---------------~~-----~~~---- 113 (382)
++||+|||+|++|+.+|..++++|.+|+|||+ ....+||+|....+.+ +. .++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~---~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~ 192 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTG---DDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA 192 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC---CCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence 68999999999999999999999999999993 2235788766443221 00 011
Q ss_pred -----------------CCCCChHHHHHHHHHH-----------HHHcC-------cEEEEeeEEEEEecCCcEEEEECC
Q 016820 114 -----------------PQGILGGDLMDRCRNQ-----------SLRFG-------TQIFTETVSKVDFKSRPFKVFTDS 158 (382)
Q Consensus 114 -----------------~~~~~~~~~~~~~~~~-----------~~~~g-------i~~~~~~v~~i~~~~~~~~v~~~~ 158 (382)
...++...+.++.+.. +++.+ ++++.+...-++ .+.+.+..++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~--~~~v~v~~~g 270 (659)
T PTZ00153 193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVD--KNTIKSEKSG 270 (659)
T ss_pred ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEec--CCeEEEccCC
Confidence 0123444444443332 23333 677777654444 3344444345
Q ss_pred eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 159 KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 159 ~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
.++.||+||+|||++|..|++++.+. ..+..+...... ...+++++|||+|.+|+|+|..|.+.|.+||++++.+
T Consensus 271 ~~i~ad~lIIATGS~P~~P~~~~~~~---~~V~ts~d~~~l--~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 271 KEFKVKNIIIATGSTPNIPDNIEVDQ---KSVFTSDTAVKL--EGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred EEEECCEEEEcCCCCCCCCCCCCCCC---CcEEehHHhhhh--hhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 67999999999999998887655432 122222222222 2347899999999999999999999999999999988
Q ss_pred CCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCC----------ceEEEecCeEEEeeC
Q 016820 239 SFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTG----------QVSDLKVSGLFFAIG 302 (382)
Q Consensus 239 ~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~----------~~~~~~~D~vi~~~G 302 (382)
.+.. ...+.+..+++.||+++.++.+.+++.++++..+ .+.+.+..++ +..++++|.+++++|
T Consensus 346 ~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v-~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG 424 (659)
T PTZ00153 346 QLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPV-IIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG 424 (659)
T ss_pred cccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEE-EEEEeccccccccccccccccceEEEcCEEEEEEC
Confidence 7632 2233322346789999999999999876543211 1222211101 113799999999999
Q ss_pred CCCChhhhc---ccccccCCCceeeCCCCCcCC------CCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 303 HEPATKFVD---GQLDLHSDGYIITKPGTTHTS------VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 303 ~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~------~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
++|++..+. .++..+ +|+|.||+ +++|+ +|||||+|||.+. +..++.|..||+.+|++|..
T Consensus 425 r~Pnt~~L~l~~~gi~~~-~G~I~VDe-~lqTs~~~~~~v~~IYAiGDv~g~-~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 425 RKPNTNNLGLDKLKIQMK-RGFVSVDE-HLRVLREDQEVYDNIFCIGDANGK-QMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred cccCCccCCchhcCCccc-CCEEeECC-CCCcCCCCCCCCCCEEEEEecCCC-ccCHHHHHHHHHHHHHHHcC
Confidence 999998753 355565 49999999 67776 6999999999974 67899999999999999964
No 51
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=281.32 Aligned_cols=297 Identities=26% Similarity=0.323 Sum_probs=216.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||||++|+++|..|++.|++|+|+| .....||.+.. ++|......++.++..+.+.++|++
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e----~~~~~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~Gv~ 259 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFD----ANEQAGGMMRY--------GIPRFRLPESVIDADIAPLRAMGAE 259 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEe----cCCCCCceeee--------cCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 45799999999999999999999999999999 55567777653 2233334566777777778889999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC-cCCCCCCCccccC-CCcceeeeccCCCCCCCCCcEEEEcCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA-KKLQFPGSDAFWN-RGISACAVCDGAAPIFRDKPLAVIGGG 214 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~v~VvG~G 214 (382)
++.++...++. ..++....||+||+|||+++ ..+++||.+.... .................+++|+|||+|
T Consensus 260 i~~~~~v~~dv-------~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG 332 (652)
T PRK12814 260 FRFNTVFGRDI-------TLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGG 332 (652)
T ss_pred EEeCCcccCcc-------CHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCC
Confidence 98886433321 11111235999999999975 5678888653110 111111110101114468999999999
Q ss_pred chHHHHHHHHhhcCC-EEEEEEeCCC--CcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec-------
Q 016820 215 DSAMEEANFLTKYGS-KVYIIHRRDS--FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL------- 284 (382)
Q Consensus 215 ~~a~e~a~~l~~~g~-~v~~~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~------- 284 (382)
++|+|+|..+.++|. +|++++++.. ++.......+.+ ++||+++++..+.++..++++..++.+.+...
T Consensus 333 ~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~-~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~ 411 (652)
T PRK12814 333 NTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEAL-AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGR 411 (652)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH-HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCC
Confidence 999999999999985 6999998764 333333333443 57999999999999987654422333333321
Q ss_pred -----cCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHH
Q 016820 285 -----VTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGC 358 (382)
Q Consensus 285 -----~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~ 358 (382)
.+++...+++|.||+++|..|++.++. .++.++.+|++.+|+.+++|+.|+|||+||++.. +.++..|+.+|+
T Consensus 412 ~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g-~~~v~~Ai~~G~ 490 (652)
T PRK12814 412 RRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTG-ADIAINAVEQGK 490 (652)
T ss_pred CcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCC-chHHHHHHHHHH
Confidence 023345799999999999999998876 4677888899999987899999999999999863 578899999999
Q ss_pred HHHHHHHHHHHHccCc
Q 016820 359 MAALEAEHYLQEIGSQ 374 (382)
Q Consensus 359 ~aa~~i~~~l~~~~~~ 374 (382)
.||.+|.++|.+++..
T Consensus 491 ~AA~~I~~~L~g~~~~ 506 (652)
T PRK12814 491 RAAHAIDLFLNGKPVT 506 (652)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999987644
No 52
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1.1e-33 Score=287.31 Aligned_cols=293 Identities=23% Similarity=0.334 Sum_probs=214.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||||+||+++|..|++.|++|+|+| ....+||.+.+ ++|......++.+...+.+.++|++
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e----~~~~~GG~l~~--------gip~~rlp~~~~~~~~~~l~~~gv~ 497 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFE----ALHEIGGVLKY--------GIPEFRLPKKIVDVEIENLKKLGVK 497 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEe----cCCCCCCeeee--------cCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 46799999999999999999999999999999 44467777653 2333333456677767777889999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCccc---cCCCcce-----eeeccC-CCCCCCCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDAF---WNRGISA-----CAVCDG-AAPIFRDK 206 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~~---~~~~~~~-----~~~~~~-~~~~~~~~ 206 (382)
++.++... +.+++. +.....||+||+|||+ .|+.+++||.+.. ....... ..+... ......++
T Consensus 498 ~~~~~~v~-----~~v~~~-~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk 571 (752)
T PRK12778 498 FETDVIVG-----KTITIE-ELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGK 571 (752)
T ss_pred EECCCEEC-----CcCCHH-HHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCC
Confidence 98885321 111121 1123669999999999 5998999997631 0000000 000000 01134579
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN 283 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~ 283 (382)
+|+|||+|++|+|+|..+.++|.+ |+++++++.. +...... +.++++||++++++.+.++..+++|+ ++++++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~-~~~~~~GV~i~~~~~~~~i~~~~~g~-v~~v~~~~ 649 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV-KHAKEEGIEFLTLHNPIEYLADEKGW-VKQVVLQK 649 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-HHHHHcCCEEEecCcceEEEECCCCE-EEEEEEEE
Confidence 999999999999999999999987 9999987643 2222222 34667899999999999998766553 55565532
Q ss_pred c---------------cCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEecccCCch
Q 016820 284 L---------------VTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK 346 (382)
Q Consensus 284 ~---------------~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~ 346 (382)
. .++++..+++|.|++++|++|+..++. .++.++++|++.+|+ .++|+.|+|||+|||+..
T Consensus 650 ~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~gVfA~GD~~~g- 727 (752)
T PRK12778 650 MELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDE-EMQSSIPGIYAGGDIVRG- 727 (752)
T ss_pred EEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCC-CCCCCCCCEEEeCCccCC-
Confidence 1 123345799999999999999987654 267788889999998 568999999999999864
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820 347 YRQAVTAAGTGCMAALEAEHYLQEI 371 (382)
Q Consensus 347 ~~~~~~a~~~g~~aa~~i~~~l~~~ 371 (382)
+.++..|+.+|+.||.+|.++|.++
T Consensus 728 ~~~vv~Av~~G~~AA~~I~~~L~~~ 752 (752)
T PRK12778 728 GATVILAMGDGKRAAAAIDEYLSSK 752 (752)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5788999999999999999999764
No 53
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=3e-33 Score=288.60 Aligned_cols=294 Identities=28% Similarity=0.368 Sum_probs=219.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||||||||++|..|++.|++|+|+| ....+||.+.. ++|......++.+...+.+.++|++
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E----~~~~~GG~l~~--------gip~~rl~~e~~~~~~~~l~~~Gv~ 496 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYE----ALHVVGGVLQY--------GIPSFRLPRDIIDREVQRLVDIGVK 496 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEe----cCCCCcceeec--------cCCccCCCHHHHHHHHHHHHHCCCE
Confidence 35799999999999999999999999999999 45567776653 3344445677888888888999999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCccccCCCccee---------------eeccCCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDAFWNRGISAC---------------AVCDGAA 200 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~ 200 (382)
++.+++...+ +++..-.....||+||+|||+ .|+.+++||.+. ..++.. .+....
T Consensus 497 ~~~~~~vg~~-----~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l---~gV~~a~~fL~~~~~~~~~~~~~~~~~- 567 (1006)
T PRK12775 497 IETNKVIGKT-----FTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFA---GQVYSANEFLTRVNLMGGDKFPFLDTP- 567 (1006)
T ss_pred EEeCCccCCc-----cCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCC---CCcEEHHHHHHHHHhcCccccccccCC-
Confidence 9988643222 121110012469999999999 589999999653 111111 111112
Q ss_pred CCCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCCcchHHHH-HHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820 201 PIFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSFRASKIMQ-NRALTNPKIDVIWNSVVLEAYGEGDKKVLGG 278 (382)
Q Consensus 201 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~~~~~~~~-~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~ 278 (382)
...+++|+|||+|++|+++|..+.++|. .|++++++.......... .+.++++||+++++..+.++..+++|+ +.+
T Consensus 568 -~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~-v~~ 645 (1006)
T PRK12775 568 -ISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGS-VRG 645 (1006)
T ss_pred -ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCe-EEE
Confidence 3468999999999999999999999986 588888776543322211 134667899999999999998765553 555
Q ss_pred EEEEec--------------cCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCC----CCCcCCCCceEE
Q 016820 279 LKVKNL--------------VTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKP----GTTHTSVPGVFA 338 (382)
Q Consensus 279 v~~~~~--------------~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~----~~~~t~~~~vya 338 (382)
+++... .+++...+++|.|++++|++|+..++. .++.++++|.+.+|+ .+++|+.|+|||
T Consensus 646 v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFA 725 (1006)
T PRK12775 646 MKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFA 725 (1006)
T ss_pred EEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEE
Confidence 655421 123335799999999999999987654 257778889999996 478999999999
Q ss_pred ecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820 339 AGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQ 374 (382)
Q Consensus 339 ~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~ 374 (382)
+||++.. +.++..|+.+|+.||.+|.++|.+....
T Consensus 726 aGDv~~G-~~~vv~Ai~~Gr~AA~~I~~~L~~~~~~ 760 (1006)
T PRK12775 726 GGDIVTG-GATVILAMGAGRRAARSIATYLRLGKKW 760 (1006)
T ss_pred ecCcCCC-ccHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999864 5788999999999999999999976543
No 54
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=4.6e-33 Score=259.73 Aligned_cols=296 Identities=27% Similarity=0.340 Sum_probs=207.6
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||+|++|+++|..|++.|++|++|| ....+|+.+... ++.. ....+.+...+ +.+.+.+++
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie----~~~~~gg~~~~~-----~~~~--~~~~~~~~~~~-~~l~~~~i~ 84 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYD----KLPEPGGLMLFG-----IPEF--RIPIERVREGV-KELEEAGVV 84 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe----CCCCCCceeeec-----Cccc--ccCHHHHHHHH-HHHHhCCeE
Confidence 45799999999999999999999999999999 444566655421 1111 11233343344 445556999
Q ss_pred EEEee-EEEEEe----cCCcEEEE---ECCeEEEcCEEEEccCC-CCcCCCCCCCccccC-CCcce----eeeccC----
Q 016820 137 IFTET-VSKVDF----KSRPFKVF---TDSKSVLADTVIVATGA-VAKKLQFPGSDAFWN-RGISA----CAVCDG---- 198 (382)
Q Consensus 137 ~~~~~-v~~i~~----~~~~~~v~---~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~~~~-~~~~~----~~~~~~---- 198 (382)
++.++ +..++. ..+.+... .++..+.||+||+|||+ .|+.|++||.+.... ..... +.....
T Consensus 85 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~ 164 (352)
T PRK12770 85 FHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPW 164 (352)
T ss_pred EecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccccc
Confidence 98884 433322 11222111 12224789999999999 478888998653111 10000 000000
Q ss_pred -CCCCCCCCcEEEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCCc--chHHHHHHhccCCCcEEEcCceeEEEEecCCce
Q 016820 199 -AAPIFRDKPLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSFR--ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKK 274 (382)
Q Consensus 199 -~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~~--~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~ 274 (382)
..+...+++++|+|+|++|+|+|..|.+.|.+ |+++.+++... ...... +.++++||+++++..+.+++.++.
T Consensus 165 ~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~-~~l~~~gi~i~~~~~v~~i~~~~~-- 241 (352)
T PRK12770 165 EKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEI-ERLIARGVEFLELVTPVRIIGEGR-- 241 (352)
T ss_pred ccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHH-HHHHHcCCEEeeccCceeeecCCc--
Confidence 11123468999999999999999999988886 99999876432 223443 447788999999999999986542
Q ss_pred eeeeEEEEec---------------cCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceE
Q 016820 275 VLGGLKVKNL---------------VTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVF 337 (382)
Q Consensus 275 ~~~~v~~~~~---------------~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vy 337 (382)
+..+++... .++++..+++|.+++++|++|+..+.. .++.++++|++.||+ .++|+.|+||
T Consensus 242 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~-~~~t~~~~vy 319 (352)
T PRK12770 242 -VEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDE-KHMTSREGVF 319 (352)
T ss_pred -EeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCC-CcccCCCCEE
Confidence 444544321 124456899999999999999988765 467778889999998 6789999999
Q ss_pred EecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 338 AAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 338 a~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
++|||+.. +..+..|+.+|+.+|.+|.++|..
T Consensus 320 aiGD~~~~-~~~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 320 AAGDVVTG-PSKIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred EEcccccC-cchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999874 578999999999999999999864
No 55
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1.3e-32 Score=264.40 Aligned_cols=283 Identities=19% Similarity=0.240 Sum_probs=198.8
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC---------------C--CCC---CCC
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF---------------P--GFP---QGI 117 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~---------------~--~~~---~~~ 117 (382)
++|++|||+|++|..+|.. .+|.+|+|||+. ..||+|....+.+.- . ++. ..+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-----~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 74 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-----TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSV 74 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-----CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCcc
Confidence 4899999999999998654 479999999952 578877655433110 0 111 123
Q ss_pred ChHHHHHHHHH------------HH---HHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCC
Q 016820 118 LGGDLMDRCRN------------QS---LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGS 182 (382)
Q Consensus 118 ~~~~~~~~~~~------------~~---~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~ 182 (382)
++..+.++... .. ++.|++++.++....+ ...+.+. ++.+++||+||+|||++|..|+..+.
T Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~V~~~-~g~~~~~d~lIiATGs~p~~p~~~~~ 151 (452)
T TIGR03452 75 RWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVG--PRTLRTG-DGEEITGDQIVIAAGSRPYIPPAIAD 151 (452)
T ss_pred CHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEec--CCEEEEC-CCcEEEeCEEEEEECCCCCCCCCCCC
Confidence 34444433211 11 1268999888755443 3334332 44579999999999999988764332
Q ss_pred ccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--hHH---HHHHhccCCCcE
Q 016820 183 DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--SKI---MQNRALTNPKID 257 (382)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~~~---~~~~~l~~~gv~ 257 (382)
... ........... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ... ...+.+ +.+|+
T Consensus 152 ~~~---~~~~~~~~~~l--~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~ 225 (452)
T TIGR03452 152 SGV---RYHTNEDIMRL--PELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWD 225 (452)
T ss_pred CCC---EEEcHHHHHhh--hhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCE
Confidence 211 01111111111 22468999999999999999999999999999999886521 111 122333 35899
Q ss_pred EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCC
Q 016820 258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVP 334 (382)
Q Consensus 258 ~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~ 334 (382)
++.+.++.+++.++++ +.+.. ..+ .++++|.+++++|++|+..++. .++.++++|++.||+ +++|+.|
T Consensus 226 i~~~~~V~~i~~~~~~-----v~v~~-~~g--~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~ 296 (452)
T TIGR03452 226 IRLGRNVTAVEQDGDG-----VTLTL-DDG--STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE-YGRTSAR 296 (452)
T ss_pred EEeCCEEEEEEEcCCe-----EEEEE-cCC--CEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCC-CcccCCC
Confidence 9999999999876543 33433 113 4799999999999999998754 467888899999998 6789999
Q ss_pred ceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 335 GVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 335 ~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
+|||+|||++. ++.++.|.+||+.+|+||..
T Consensus 297 ~IyA~GD~~~~-~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 297 GVWALGDVSSP-YQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred CEEEeecccCc-ccChhHHHHHHHHHHHHhcC
Confidence 99999999974 57889999999999999964
No 56
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=1.6e-32 Score=265.00 Aligned_cols=290 Identities=26% Similarity=0.296 Sum_probs=210.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||||++|+++|..|++.|++|+||| .....||.+.. ++|......++.....+.+.++|++
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie----~~~~~GG~l~~--------gip~~~~~~~~~~~~~~~~~~~gv~ 209 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFE----RADRIGGLLRY--------GIPDFKLEKEVIDRRIELMEAEGIE 209 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEe----cCCCCCceeee--------cCCcccCCHHHHHHHHHHHHhCCcE
Confidence 45799999999999999999999999999999 44556766543 2333334456677777778889999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccccCCCccee-ee-------------ccCCCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFWNRGISAC-AV-------------CDGAAP 201 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~~~~~~~~-~~-------------~~~~~~ 201 (382)
++.++....+... +.....||+||+|||+. |+.+.+||.+. ..++.. .+ ....
T Consensus 210 ~~~~~~v~~~~~~-------~~~~~~~d~vvlAtGa~~~~~l~ipG~~~---~gV~~~~~~l~~~~~~~~~~~~~~~~-- 277 (471)
T PRK12810 210 FRTNVEVGKDITA-------EELLAEYDAVFLGTGAYKPRDLGIPGRDL---DGVHFAMDFLIQNTRRVLGDETEPFI-- 277 (471)
T ss_pred EEeCCEECCcCCH-------HHHHhhCCEEEEecCCCCCCcCCCCCccC---CCcEEHHHHHHHHHhhhccccccccc--
Confidence 9988644332111 11225799999999997 77888888653 111111 00 0111
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCCcchH-----------HHHHHhccCCCcEEEcCceeEEEEe
Q 016820 202 IFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSFRASK-----------IMQNRALTNPKIDVIWNSVVLEAYG 269 (382)
Q Consensus 202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~~~~~-----------~~~~~~l~~~gv~~~~~~~v~~i~~ 269 (382)
...+++|+|||+|++|+|+|..+.+.|. +|+.+.+.+...... .+..+.+.+.||+++++..+.++..
T Consensus 278 ~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~ 357 (471)
T PRK12810 278 SAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG 357 (471)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc
Confidence 3457999999999999999998888875 788665544322111 0112345668999999999999976
Q ss_pred cCCceeeeeEEEEecc---------CCceEEEecCeEEEeeCCCCChh-hhc-ccccccCCCceeeCCCCCcCCCCceEE
Q 016820 270 EGDKKVLGGLKVKNLV---------TGQVSDLKVSGLFFAIGHEPATK-FVD-GQLDLHSDGYIITKPGTTHTSVPGVFA 338 (382)
Q Consensus 270 ~~~g~~~~~v~~~~~~---------~~~~~~~~~D~vi~~~G~~p~~~-~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya 338 (382)
+++ .+.+|++.... +++...+++|.||+++|.+|+.. ++. .++.++++|++.+|+.+++|+.|+|||
T Consensus 358 ~~g--~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa 435 (471)
T PRK12810 358 ENG--KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFA 435 (471)
T ss_pred cCC--EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEE
Confidence 432 25556554211 23446799999999999999853 554 467788889999985478899999999
Q ss_pred ecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccC
Q 016820 339 AGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGS 373 (382)
Q Consensus 339 ~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~ 373 (382)
+|||+.. +.++..|+.+|+.||.+|.++|.++.+
T Consensus 436 ~GD~~~g-~~~~~~Av~~G~~AA~~i~~~L~g~~~ 469 (471)
T PRK12810 436 AGDMRRG-QSLVVWAIAEGRQAARAIDAYLMGSTA 469 (471)
T ss_pred ccccCCC-chhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999974 567889999999999999999987554
No 57
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=3.4e-33 Score=283.60 Aligned_cols=281 Identities=21% Similarity=0.274 Sum_probs=206.6
Q ss_pred EEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCcccCCCCC-CCCChHHHHHHHHHHHHHcCcE
Q 016820 61 VCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP-QGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 61 vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
|||||+|+||+++|.+|+++ +++|+|||+.. ..+.... .++.+. .....+++.....+++++.+++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~----~~~y~r~------~L~~~l~g~~~~~~l~~~~~~~~~~~gv~ 70 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEP----HPNYNRI------LLSSVLQGEADLDDITLNSKDWYEKHGIT 70 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCC----CCCcccc------cccHHHCCCCCHHHccCCCHHHHHHCCCE
Confidence 69999999999999999876 47999999531 2111000 011111 1223445554556667788999
Q ss_pred EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEEEc
Q 016820 137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVIG 212 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~VvG 212 (382)
++.+ +|+.|+++++.+.+. ++.++.||+||+|||+.|+.|++||.+. +..+.+.++...... ...+++++|||
T Consensus 71 ~~~g~~V~~Id~~~k~V~~~-~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~--~~~~k~vvVVG 147 (785)
T TIGR02374 71 LYTGETVIQIDTDQKQVITD-AGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAM--AQRFKKAAVIG 147 (785)
T ss_pred EEcCCeEEEEECCCCEEEEC-CCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHH--hhcCCeEEEEC
Confidence 9998 799999887654432 4557999999999999999999999764 222222222222222 23468999999
Q ss_pred CCchHHHHHHHHhhcCCEEEEEEeCCCCcch------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC
Q 016820 213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRAS------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT 286 (382)
Q Consensus 213 ~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~ 286 (382)
+|.+|+|+|..|.+.|.+|+++++.+.+... ....++.+++.||+++++..+.++..++. +..+.+.+
T Consensus 148 gG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~---~~~v~~~d--- 221 (785)
T TIGR02374 148 GGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATK---ADRIRFKD--- 221 (785)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCc---eEEEEECC---
Confidence 9999999999999999999999988876321 23335667889999999999999987543 33455543
Q ss_pred CceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch---hhHHHHHHhhHHHHHH
Q 016820 287 GQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---YRQAVTAAGTGCMAAL 362 (382)
Q Consensus 287 ~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---~~~~~~a~~~g~~aa~ 362 (382)
+ ..+++|.|++++|.+|+..++. .++..+ |.+.||+ +++|++|||||+|||+... ...+..|..||+.+|.
T Consensus 222 G--~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~-~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ 296 (785)
T TIGR02374 222 G--SSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVND-SMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLAD 296 (785)
T ss_pred C--CEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECC-CcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHH
Confidence 3 5799999999999999999875 456554 7799998 7889999999999998642 3356678899999999
Q ss_pred HHH
Q 016820 363 EAE 365 (382)
Q Consensus 363 ~i~ 365 (382)
||.
T Consensus 297 ni~ 299 (785)
T TIGR02374 297 HIC 299 (785)
T ss_pred Hhc
Confidence 986
No 58
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=3.1e-32 Score=274.52 Aligned_cols=289 Identities=23% Similarity=0.275 Sum_probs=206.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+||||||||+++|..|+++|++|+|+| ....+||.+.. .+|......++.++..+.+.+.|++
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~E----k~~~~GG~lr~--------~IP~~Rlp~evL~~die~l~~~GVe 605 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFE----REENAGGVVKN--------IIPQFRIPAELIQHDIEFVKAHGVK 605 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEe----cccccCcceee--------ecccccccHHHHHHHHHHHHHcCCE
Confidence 45799999999999999999999999999999 44567777653 1223233456666666777888999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccccCCCcceeeec-cCCCCCCCCCcEEEEcCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFWNRGISACAVC-DGAAPIFRDKPLAVIGGG 214 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~v~VvG~G 214 (382)
++.++...++.++ .....||+||||||++ +..++++|.+......+...... ........+++|+|||+|
T Consensus 606 ~~~gt~Vdi~le~--------L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGG 677 (1019)
T PRK09853 606 FEFGCSPDLTVEQ--------LKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGG 677 (1019)
T ss_pred EEeCceeEEEhhh--------heeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCC
Confidence 9988533333221 1235699999999997 45567887653111111111111 001113458999999999
Q ss_pred chHHHHHHHHhhc-C-CEEEEEEeCCC--CcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE--------
Q 016820 215 DSAMEEANFLTKY-G-SKVYIIHRRDS--FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK-------- 282 (382)
Q Consensus 215 ~~a~e~a~~l~~~-g-~~v~~~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~-------- 282 (382)
++|+|+|..+.+. + .+|++++|+.. ++......++++ ++||+++....+.++..++. -.+..+.+.
T Consensus 678 nVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Al-eeGVe~~~~~~p~~I~~dG~-l~~~~~~lg~~d~~Gr~ 755 (1019)
T PRK09853 678 NTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEAL-EDGVEFKELLNPESFDADGT-LTCRVMKLGEPDESGRR 755 (1019)
T ss_pred hHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHH-HcCCEEEeCCceEEEEcCCc-EEEEEEEeecccCCCce
Confidence 9999999998887 4 48999998753 333333334444 46999999999999864321 001111110
Q ss_pred -eccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHH
Q 016820 283 -NLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMA 360 (382)
Q Consensus 283 -~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~a 360 (382)
....+++.++++|.||+++|.+|+..++. .++.++++|++.||+ +++|+.|+|||+|||+.. +.++..|+.+|+.|
T Consensus 756 ~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDe-tlqTs~pgVFAaGD~a~G-p~tvv~Ai~qGr~A 833 (1019)
T PRK09853 756 RPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDA-NGETSLTNVYMIGDVQRG-PSTIVAAIADARRA 833 (1019)
T ss_pred EEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCC-CcccCCCCEEEEeccccC-chHHHHHHHHHHHH
Confidence 01124557899999999999999998876 467788899999987 788999999999999863 57899999999999
Q ss_pred HHHHHHHHH
Q 016820 361 ALEAEHYLQ 369 (382)
Q Consensus 361 a~~i~~~l~ 369 (382)
|.+|...+.
T Consensus 834 A~nI~~~~~ 842 (1019)
T PRK09853 834 ADAILSREG 842 (1019)
T ss_pred HHHHhhhcC
Confidence 999998765
No 59
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=1.7e-31 Score=270.59 Aligned_cols=289 Identities=23% Similarity=0.272 Sum_probs=202.6
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+||||||||++||+.|++.|++|+|+| ....+||.+... +|......+..++..+.+.++|++
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~E----k~~~lGG~l~~~--------IP~~rlp~e~l~~~ie~l~~~GVe 603 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFE----KKEKPGGVVKNI--------IPEFRISAESIQKDIELVKFHGVE 603 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEe----cccccCceeeec--------ccccCCCHHHHHHHHHHHHhcCcE
Confidence 45799999999999999999999999999999 445678876531 222223345666666677788999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccccCCCcceeeecc-CCCCCCCCCcEEEEcCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFWNRGISACAVCD-GAAPIFRDKPLAVIGGG 214 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~v~VvG~G 214 (382)
++.+....+ .+. +.....||+||+|||++ +..+.++|........+....... .......+++|+|||+|
T Consensus 604 ~~~g~~~d~-------~ve-~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGG 675 (1012)
T TIGR03315 604 FKYGCSPDL-------TVA-ELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGG 675 (1012)
T ss_pred EEEecccce-------Ehh-hhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCC
Confidence 988732111 111 11235699999999997 455577775431111111111111 10113458999999999
Q ss_pred chHHHHHHHHhhc-C-CEEEEEEeCCC--CcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE--------
Q 016820 215 DSAMEEANFLTKY-G-SKVYIIHRRDS--FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK-------- 282 (382)
Q Consensus 215 ~~a~e~a~~l~~~-g-~~v~~~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~-------- 282 (382)
++|+|+|..+.+. | .+|++++++.. ++......++.+ ++||+++....+.++.. ++-.+..+.+.
T Consensus 676 nvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al-eeGVe~~~~~~p~~I~~--g~l~v~~~~l~~~d~sGr~ 752 (1012)
T TIGR03315 676 NTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEAL-EDGVDFKELLSPESFED--GTLTCEVMKLGEPDASGRR 752 (1012)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHH-HcCCEEEeCCceEEEEC--CeEEEEEEEeecccCCCce
Confidence 9999999998876 6 48999998763 233333333444 46999999988888872 11011111110
Q ss_pred -eccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHH
Q 016820 283 -NLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMA 360 (382)
Q Consensus 283 -~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~a 360 (382)
...++++..+++|.||+++|.+|+..++. .++.++++|++.+|+.+++|+.|+|||+|||+.. +.++..|+.+|+.|
T Consensus 753 ~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~G-P~tVv~AIaqGr~A 831 (1012)
T TIGR03315 753 RPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRG-PATIVEAIADGRKA 831 (1012)
T ss_pred eeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCC-ccHHHHHHHHHHHH
Confidence 11124456799999999999999998876 4677888999999986689999999999999863 67899999999999
Q ss_pred HHHHHHHHH
Q 016820 361 ALEAEHYLQ 369 (382)
Q Consensus 361 a~~i~~~l~ 369 (382)
|.+|.....
T Consensus 832 A~nIl~~~~ 840 (1012)
T TIGR03315 832 ANAILSREG 840 (1012)
T ss_pred HHHHhcccc
Confidence 999986543
No 60
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=2.6e-31 Score=266.11 Aligned_cols=293 Identities=23% Similarity=0.263 Sum_probs=210.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||||+||+++|..|+++|++|+|+| ....+||.+.. ++|......++.++..+.++++|++
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E----~~~~~GG~l~~--------gip~~~l~~~~~~~~~~~~~~~Gv~ 393 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYD----RHPEIGGLLTF--------GIPAFKLDKSLLARRREIFSAMGIE 393 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe----cCCCCCceeee--------cCCCccCCHHHHHHHHHHHHHCCeE
Confidence 45799999999999999999999999999999 55567877654 2233333456777767778889999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccc--------cCC---Cccee-eeccCCCCCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAF--------WNR---GISAC-AVCDGAAPIF 203 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~--------~~~---~~~~~-~~~~~~~~~~ 203 (382)
++.++....+ +.+ ......||.|++|+|.. +..+.++|.+.- ... ..... ..........
T Consensus 394 ~~~~~~v~~~-----i~~--~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 466 (654)
T PRK12769 394 FELNCEVGKD-----ISL--ESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINT 466 (654)
T ss_pred EECCCEeCCc-----CCH--HHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccC
Confidence 9887522111 111 11124699999999995 445677776530 000 00000 0000010023
Q ss_pred CCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820 204 RDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK 280 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~ 280 (382)
.+++|+|||+|++|+++|..+.++|. +|+++++++.. +...... +.++++||+++++..+.++..+++|+ +.+|+
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~-~~~~~~Gv~~~~~~~~~~i~~~~~g~-v~~v~ 544 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEV-KNAREEGANFEFNVQPVALELNEQGH-VCGIR 544 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHH-HHHHHcCCeEEeccCcEEEEECCCCe-EEEEE
Confidence 57899999999999999999999885 79999987653 3344443 34677899999999999998655443 55565
Q ss_pred EEecc---------------CCceEEEecCeEEEeeCCCCCh-hhhc-ccccccCCCceeeCCC---CCcCCCCceEEec
Q 016820 281 VKNLV---------------TGQVSDLKVSGLFFAIGHEPAT-KFVD-GQLDLHSDGYIITKPG---TTHTSVPGVFAAG 340 (382)
Q Consensus 281 ~~~~~---------------~~~~~~~~~D~vi~~~G~~p~~-~~~~-~~~~~~~~g~i~vd~~---~~~t~~~~vya~G 340 (382)
+.... +++...+++|.||+++|+.|+. .++. .++.++++|.+.+|+. .++|+.|+|||+|
T Consensus 545 ~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaG 624 (654)
T PRK12769 545 FLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGG 624 (654)
T ss_pred EEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcC
Confidence 53211 2334579999999999999985 3444 4678888999999863 4789999999999
Q ss_pred ccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820 341 DVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 371 (382)
Q Consensus 341 D~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~ 371 (382)
|+... +.++..|+.+|+.||.+|.++|..|
T Consensus 625 D~~~g-~~~vv~Ai~~Gr~AA~~I~~~L~~~ 654 (654)
T PRK12769 625 DAVRG-ADLVVTAMAEGRHAAQGIIDWLGVK 654 (654)
T ss_pred CcCCC-CcHHHHHHHHHHHHHHHHHHHhCcC
Confidence 99864 5788999999999999999998753
No 61
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-31 Score=229.22 Aligned_cols=290 Identities=22% Similarity=0.211 Sum_probs=213.5
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC-----------------CCCCC---
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-----------------PGFPQ--- 115 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-----------------~~~~~--- 115 (382)
...+|.+|||||..|+..|+.++++|.++.|+| .....||+|....+.+.- -+++.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E----~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~ 93 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCE----LPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEE 93 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEe----cCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccc
Confidence 357999999999999999999999999999999 555778887654332110 11221
Q ss_pred -CCChHHH-------HHHH----HHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeE---EEcCEEEEccCCCCcCCCCC
Q 016820 116 -GILGGDL-------MDRC----RNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKS---VLADTVIVATGAVAKKLQFP 180 (382)
Q Consensus 116 -~~~~~~~-------~~~~----~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~---~~~d~lvlA~G~~~~~~~~~ 180 (382)
..++..+ ..+| ++.+.+.+++++.+....+++. .+.++..+++ |.++++++|+|.+|..|.+|
T Consensus 94 ~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~--~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIp 171 (478)
T KOG0405|consen 94 GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPG--EVEVEVNDGTKIVYTAKHILIATGGRPIIPNIP 171 (478)
T ss_pred cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCC--ceEEEecCCeeEEEecceEEEEeCCccCCCCCC
Confidence 1233322 2222 3334455788888887777644 3455444443 89999999999999999999
Q ss_pred CCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCC
Q 016820 181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPK 255 (382)
Q Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~g 255 (382)
|.+..... +-.-.. ...+++++|||+|++|+|+|..+..+|.+++++.|.+.+.- ......+.++.+|
T Consensus 172 G~E~gidS-----Dgff~L--ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~g 244 (478)
T KOG0405|consen 172 GAELGIDS-----DGFFDL--EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRG 244 (478)
T ss_pred chhhcccc-----ccccch--hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcc
Confidence 98752211 111111 44689999999999999999999999999999999987631 2233346688899
Q ss_pred cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCC
Q 016820 256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTS 332 (382)
Q Consensus 256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~ 332 (382)
|++|.++.+.++....+|. ..+.. ..+....+|.++|++|+.|++.-+. .++.++++|.|.+|+ +++|+
T Consensus 245 invh~~s~~~~v~K~~~g~----~~~i~---~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDe-Yq~Tn 316 (478)
T KOG0405|consen 245 INVHKNSSVTKVIKTDDGL----ELVIT---SHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDE-YQNTN 316 (478)
T ss_pred eeecccccceeeeecCCCc----eEEEE---eccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEec-cccCC
Confidence 9999999999999887762 22222 1224556999999999999998665 578899999999999 99999
Q ss_pred CCceEEecccCCchhhHHHHHHhhHHHHHHHHHHH
Q 016820 333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHY 367 (382)
Q Consensus 333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~ 367 (382)
+|+||++||+.+ +.-+...|...|+..+..+-..
T Consensus 317 vp~I~avGDv~g-k~~LTPVAiaagr~la~rlF~~ 350 (478)
T KOG0405|consen 317 VPSIWAVGDVTG-KINLTPVAIAAGRKLANRLFGG 350 (478)
T ss_pred CCceEEeccccC-cEecchHHHhhhhhHHHHhhcC
Confidence 999999999997 3455667777777776665443
No 62
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=100.00 E-value=9e-31 Score=252.97 Aligned_cols=293 Identities=26% Similarity=0.329 Sum_probs=206.1
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
.++|+|||+|++|+++|..|++.|++|+|+| ....+||.+.+ ++|......++.....+.++++|+++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e----~~~~~gG~l~~--------gip~~~~~~~~~~~~~~~~~~~Gv~~ 210 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFE----REDRCGGLLMY--------GIPNMKLDKAIVDRRIDLLSAEGIDF 210 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEe----cCCCCCceeec--------cCCCccCCHHHHHHHHHHHHhCCCEE
Confidence 4799999999999999999999999999999 44456766653 22222334556666667778899999
Q ss_pred EEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccccCCCcceee---------eccCC-----CCC
Q 016820 138 FTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFWNRGISACA---------VCDGA-----API 202 (382)
Q Consensus 138 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~~~~~~~~~---------~~~~~-----~~~ 202 (382)
+.++....+... +.....||.||+|||.+ |..+++||.+. ..++... ..... ...
T Consensus 211 ~~~~~v~~~~~~-------~~~~~~~d~VilAtGa~~~~~l~i~G~~~---~gV~~~~~~l~~~~~~~~~~~~~~~~~~~ 280 (485)
T TIGR01317 211 VTNTEIGVDISA-------DELKEQFDAVVLAGGATKPRDLPIPGREL---KGIHYAMEFLPSATKALLGKDFKDIIFIK 280 (485)
T ss_pred ECCCEeCCccCH-------HHHHhhCCEEEEccCCCCCCcCCCCCcCC---CCcEeHHHHHHHHhhhhcccccccccccc
Confidence 888533222111 11235799999999997 88889998753 1121110 00000 012
Q ss_pred CCCCcEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCCCCcch----------------HHHHHHhccCCCcEE-EcCcee
Q 016820 203 FRDKPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSFRAS----------------KIMQNRALTNPKIDV-IWNSVV 264 (382)
Q Consensus 203 ~~~~~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~~~~~~----------------~~~~~~~l~~~gv~~-~~~~~v 264 (382)
..+++|+|||+|++|+++|..+.+.+ .+|+++++.+..... ....++..+..|+.+ +++..+
T Consensus 281 ~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~ 360 (485)
T TIGR01317 281 AKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILT 360 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCc
Confidence 46799999999999999988887776 579999877654211 111223333346543 457778
Q ss_pred EEEEecCCceeeeeEEEEec--------------cCCceEEEecCeEEEeeCCC-CChhhhc-ccccccCCCceeeCCCC
Q 016820 265 LEAYGEGDKKVLGGLKVKNL--------------VTGQVSDLKVSGLFFAIGHE-PATKFVD-GQLDLHSDGYIITKPGT 328 (382)
Q Consensus 265 ~~i~~~~~g~~~~~v~~~~~--------------~~~~~~~~~~D~vi~~~G~~-p~~~~~~-~~~~~~~~g~i~vd~~~ 328 (382)
.+|..+++|+ +.++.+... ..++...+++|.|++++|.. |+..++. .++.++++|++.+++..
T Consensus 361 ~~i~~~~~g~-v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~ 439 (485)
T TIGR01317 361 KEFIGDDEGK-VTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDD 439 (485)
T ss_pred EEEEEcCCCe-EEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCC
Confidence 8887654332 555553211 12334579999999999996 8877766 46777788999776668
Q ss_pred CcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820 329 THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQ 374 (382)
Q Consensus 329 ~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~ 374 (382)
++|+.|+|||+|||+.. +.++..|+.+|+.||.+|.++|.++..+
T Consensus 440 ~~Ts~~gVfAaGD~~~g-~~~~~~Av~~G~~AA~~i~~~L~g~~~~ 484 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRRG-QSLIVWAINEGRKAAAAVDRYLMGSSVL 484 (485)
T ss_pred ceECCCCEEEeeccCCC-cHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999864 5688899999999999999999876543
No 63
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=9.1e-31 Score=251.97 Aligned_cols=288 Identities=25% Similarity=0.326 Sum_probs=209.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||+|++|+++|..|++.|++|+++| ....+||.+.. ++|......++.++..+.+.++|++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e----~~~~~gG~l~~--------gip~~~~~~~~~~~~~~~~~~~Gv~ 207 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFD----RHPEIGGLLTF--------GIPSFKLDKAVLSRRREIFTAMGIE 207 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEe----cCCCCCceeee--------cCccccCCHHHHHHHHHHHHHCCCE
Confidence 45799999999999999999999999999999 45567776653 2333334567777777888999999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC-cCCCCCCCccccCCCcce--------------ee-eccCCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA-KKLQFPGSDAFWNRGISA--------------CA-VCDGAA 200 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~-~~~~~~g~~~~~~~~~~~--------------~~-~~~~~~ 200 (382)
++.++....+ +..++....||.||+|||+.+ ..+++||.+. ..++. .. ......
T Consensus 208 ~~~~~~v~~~-------~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~---~gV~~a~~~l~~~~~~~~~~~~~~~~~~ 277 (467)
T TIGR01318 208 FHLNCEVGRD-------ISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDA---PGVLQALPFLIANTRQLMGLPESPEEPL 277 (467)
T ss_pred EECCCEeCCc-------cCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCC---CCcEEHHHHHHHHHHHhcCCCccccccc
Confidence 9887422111 111122247999999999976 4567888654 11110 00 000000
Q ss_pred CCCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeee
Q 016820 201 PIFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLG 277 (382)
Q Consensus 201 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 277 (382)
....+++++|+|+|.+|+++|..+.++|. +||++++++.. +...... +.++++||+++++..+.++..+++|+ +.
T Consensus 278 ~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~-~~~~~~GV~~~~~~~~~~i~~~~~g~-v~ 355 (467)
T TIGR01318 278 IDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV-ANAREEGVEFLFNVQPVYIECDEDGR-VT 355 (467)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH-HHHHhcCCEEEecCCcEEEEECCCCe-EE
Confidence 12357899999999999999999999985 79999987653 3333333 33567899999999999998765543 55
Q ss_pred eEEEEec---------------cCCceEEEecCeEEEeeCCCCCh-hhhc-ccccccCCCceeeCC---CCCcCCCCceE
Q 016820 278 GLKVKNL---------------VTGQVSDLKVSGLFFAIGHEPAT-KFVD-GQLDLHSDGYIITKP---GTTHTSVPGVF 337 (382)
Q Consensus 278 ~v~~~~~---------------~~~~~~~~~~D~vi~~~G~~p~~-~~~~-~~~~~~~~g~i~vd~---~~~~t~~~~vy 337 (382)
++++... .++++..+++|.||+++|++|+. .++. .++.++++|++.+|+ ..++|+.|+||
T Consensus 356 ~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVf 435 (467)
T TIGR01318 356 GVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIF 435 (467)
T ss_pred EEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEE
Confidence 5555321 12345689999999999999985 3443 467788889999994 36789999999
Q ss_pred EecccCCchhhHHHHHHhhHHHHHHHHHHHHH
Q 016820 338 AAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQ 369 (382)
Q Consensus 338 a~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~ 369 (382)
++|||+.. +..+..|+.+|+.||.+|.++|.
T Consensus 436 a~GD~~~~-~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 436 AGGDAVRG-ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred EECCcCCC-ccHHHHHHHHHHHHHHHHHHHhc
Confidence 99999864 56788999999999999999874
No 64
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=7.6e-31 Score=230.97 Aligned_cols=294 Identities=24% Similarity=0.246 Sum_probs=220.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC----------------------CCCC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF----------------------PGFP 114 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~----------------------~~~~ 114 (382)
.++||+|||+||+|..+|..++++|++.++|| +....||++....+.+.- ...+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvE----kr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~ 113 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVE----KRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSS 113 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEe----ccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccc
Confidence 47999999999999999999999999999999 566888887654332110 0011
Q ss_pred CCCChHHH-----------HHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEEC---CeEEEcCEEEEccCCCCcCCCCC
Q 016820 115 QGILGGDL-----------MDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD---SKSVLADTVIVATGAVAKKLQFP 180 (382)
Q Consensus 115 ~~~~~~~~-----------~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~---~~~~~~d~lvlA~G~~~~~~~~~ 180 (382)
..++.+.+ ..-+...+++.+++++.+.-..++++ .+.+... ...+.++.+|+|||+. .+++|
T Consensus 114 ~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~--~V~v~k~dg~~~ii~aKnIiiATGSe--V~~~P 189 (506)
T KOG1335|consen 114 VSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN--KVSVKKIDGEDQIIKAKNIIIATGSE--VTPFP 189 (506)
T ss_pred eecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc--eEEEeccCCCceEEeeeeEEEEeCCc--cCCCC
Confidence 12222222 22344455666888888876666654 3444432 2459999999999994 23455
Q ss_pred CCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc------chHHHHHHhccCC
Q 016820 181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------ASKIMQNRALTNP 254 (382)
Q Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~l~~~ 254 (382)
|..-- ...+-+..-.... ...+++++|+|+|.+|+|+..-+.++|.+||+++-.+.+. .++.. ++.|+..
T Consensus 190 GI~ID-ekkIVSStgALsL--~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~-qr~L~kQ 265 (506)
T KOG1335|consen 190 GITID-EKKIVSSTGALSL--KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAF-QRVLQKQ 265 (506)
T ss_pred CeEec-CceEEecCCccch--hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHH-HHHHHhc
Confidence 54321 1222222222222 4568999999999999999999999999999999887763 23444 5778889
Q ss_pred CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcC
Q 016820 255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHT 331 (382)
Q Consensus 255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t 331 (382)
|+.+++++.+..++.+++|. ..+.+++..+++...++||.+++++|++|.+.-+. .++..|++|.+.+|. .++|
T Consensus 266 gikF~l~tkv~~a~~~~dg~--v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~-~f~t 342 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGP--VEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNT-RFQT 342 (506)
T ss_pred CceeEeccEEEEeeccCCCc--eEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccc-cccc
Confidence 99999999999999999873 34677776777788999999999999999988665 477789999999998 8899
Q ss_pred CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
.+||||+|||+... |++++.|..+|-.+.+.|+.
T Consensus 343 ~vP~i~~IGDv~~g-pMLAhkAeeegI~~VE~i~g 376 (506)
T KOG1335|consen 343 KVPHIYAIGDVTLG-PMLAHKAEEEGIAAVEGIAG 376 (506)
T ss_pred cCCceEEecccCCc-chhhhhhhhhchhheeeecc
Confidence 99999999999974 78999999999988776653
No 65
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.98 E-value=2.7e-30 Score=246.85 Aligned_cols=282 Identities=19% Similarity=0.213 Sum_probs=203.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc-----------------------------
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV----------------------------- 107 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~----------------------------- 107 (382)
..++|+|||||++||.+|++|.+.|++|+++| +...+||.|......
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE----~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~ 84 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFE----REKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE 84 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEe----cCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence 35899999999999999999999999999999 556778888653210
Q ss_pred ----ccCCCCC----------CCCChHHHHHHHHHHHHHcCcE--EEEe-eEEEEEecCCcEEEEECC--e---EEEcCE
Q 016820 108 ----ENFPGFP----------QGILGGDLMDRCRNQSLRFGTQ--IFTE-TVSKVDFKSRPFKVFTDS--K---SVLADT 165 (382)
Q Consensus 108 ----~~~~~~~----------~~~~~~~~~~~~~~~~~~~gi~--~~~~-~v~~i~~~~~~~~v~~~~--~---~~~~d~ 165 (382)
..+|..+ ..+...++.+|++++++++++. +..+ +|+.|++.++.|.+.+.+ + +..||+
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~ 164 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDA 164 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCE
Confidence 1122211 2346689999999999999987 6666 799999888888887632 1 367999
Q ss_pred EEEccC--CCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch
Q 016820 166 VIVATG--AVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS 243 (382)
Q Consensus 166 lvlA~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~ 243 (382)
||+|+| ..|+.|.+||.+.+.+..+|.+.+.... .+.+|+|+|||+|.+|+|+|..|.+.+++|++++|...+...
T Consensus 165 VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~--~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~ 242 (461)
T PLN02172 165 VVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPD--PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTY 242 (461)
T ss_pred EEEeccCCCCCcCCCCCCcccCCceEEEecccCCcc--ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccccc
Confidence 999999 5799999999988888888888887765 678999999999999999999999999999999997654211
Q ss_pred HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcc-c-ccccCCCc
Q 016820 244 KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG-Q-LDLHSDGY 321 (382)
Q Consensus 244 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~-~-~~~~~~g~ 321 (382)
..+......++.+..|..+..++. |++.+ + ..+++|.||+|||++++.+++.. + +..+.+..
T Consensus 243 -----~~~~~~~~~v~~~~~I~~~~~~g~------V~f~D---G--~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v 306 (461)
T PLN02172 243 -----EKLPVPQNNLWMHSEIDTAHEDGS------IVFKN---G--KVVYADTIVHCTGYKYHFPFLETNGYMRIDENRV 306 (461)
T ss_pred -----ccCcCCCCceEECCcccceecCCe------EEECC---C--CCccCCEEEECCcCCccccccCcccceeeCCCcc
Confidence 112222334455667776654432 77765 4 45789999999999999999862 1 22222221
Q ss_pred eeeCCCCCcCC-CCceEEecccCCchhhHHHHHHhhHHHHHH
Q 016820 322 IITKPGTTHTS-VPGVFAAGDVQDKKYRQAVTAAGTGCMAAL 362 (382)
Q Consensus 322 i~vd~~~~~t~-~~~vya~GD~~~~~~~~~~~a~~~g~~aa~ 362 (382)
...-.+.+... .|+++.+|=.... .....+-.|++.+|.
T Consensus 307 ~~Ly~~~f~~~~~p~LafiG~~~~~--~~f~~~E~Qa~~~a~ 346 (461)
T PLN02172 307 EPLYKHVFPPALAPGLSFIGLPAMG--IQFVMFEIQSKWVAA 346 (461)
T ss_pred hhhHHhhcCCCCCCcEEEEeccccc--cCchhHHHHHHHHHH
Confidence 12322233444 4899999976421 223344445554443
No 66
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=5.6e-30 Score=255.38 Aligned_cols=293 Identities=22% Similarity=0.257 Sum_probs=209.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||+|++|+++|..|++.|++|+++| ....+||.+.+ ++|......++.+...+.+.++|++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e----~~~~~GG~l~~--------gip~~~l~~~~~~~~~~~~~~~Gv~ 376 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFD----RHPEIGGMLTF--------GIPPFKLDKTVLSQRREIFTAMGID 376 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEe----CCCCCCCeeec--------cCCcccCCHHHHHHHHHHHHHCCeE
Confidence 45899999999999999999999999999999 55567777654 2333334466777777788899999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccc--------cCCCcceeeeccC----CCCCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAF--------WNRGISACAVCDG----AAPIF 203 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~--------~~~~~~~~~~~~~----~~~~~ 203 (382)
++.++....+ +.+ ++....||.||+|+|+. +..+.++|.+.- ............. .....
T Consensus 377 ~~~~~~v~~~-----~~~--~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 449 (639)
T PRK12809 377 FHLNCEIGRD-----ITF--SDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDV 449 (639)
T ss_pred EEcCCccCCc-----CCH--HHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccC
Confidence 9888421111 111 11234699999999996 445677776530 0000000000000 01123
Q ss_pred CCCcEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820 204 RDKPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK 280 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~ 280 (382)
.+++++|+|+|.++++.+..+.++| .+||++++++.. +....... .++++||+++++..+.++..+++|+ +.+++
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~-~a~~eGv~~~~~~~~~~i~~~~~g~-v~~v~ 527 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV-NAREEGVEFQFNVQPQYIACDEDGR-LTAVG 527 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH-HHHHcCCeEEeccCCEEEEECCCCe-EEEEE
Confidence 5799999999999999999988888 489999987654 22233322 3557899999999999998765553 55554
Q ss_pred EEecc---------------CCceEEEecCeEEEeeCCCCCh-hhhc-ccccccCCCceeeCCC---CCcCCCCceEEec
Q 016820 281 VKNLV---------------TGQVSDLKVSGLFFAIGHEPAT-KFVD-GQLDLHSDGYIITKPG---TTHTSVPGVFAAG 340 (382)
Q Consensus 281 ~~~~~---------------~~~~~~~~~D~vi~~~G~~p~~-~~~~-~~~~~~~~g~i~vd~~---~~~t~~~~vya~G 340 (382)
+.... +++...+++|.||+++|++|+. .++. .++.++++|++.+|+. +++|+.|+|||+|
T Consensus 528 ~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~G 607 (639)
T PRK12809 528 LIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGG 607 (639)
T ss_pred EEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcC
Confidence 42211 2345689999999999999974 4444 4677888899999862 4789999999999
Q ss_pred ccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820 341 DVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 371 (382)
Q Consensus 341 D~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~ 371 (382)
|+... +.++..|+.+|+.||.+|..+|.++
T Consensus 608 D~~~g-~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 608 DAVHG-ADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CCCCC-chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99864 5788999999999999999999865
No 67
>PRK13984 putative oxidoreductase; Provisional
Probab=99.97 E-value=1.2e-29 Score=252.71 Aligned_cols=288 Identities=24% Similarity=0.318 Sum_probs=200.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||+|++|+++|..|+++|++|+|+| ....+||.+.. +++......++.....+.++++|++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie----~~~~~gG~~~~--------~i~~~~~~~~~~~~~~~~~~~~gv~ 349 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYE----SLSKPGGVMRY--------GIPSYRLPDEALDKDIAFIEALGVK 349 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEe----cCCCCCceEee--------cCCcccCCHHHHHHHHHHHHHCCcE
Confidence 45789999999999999999999999999999 44556666543 2222233456666666778889999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccc-cCCCcceeeecc----CC-CCCCCCCcEE
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAF-WNRGISACAVCD----GA-APIFRDKPLA 209 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~-~~~~~~~~~~~~----~~-~~~~~~~~v~ 209 (382)
++.++....+.. .+.....||+||+|||+. |+.+++||.+.. ............ .. .....+++|+
T Consensus 350 ~~~~~~v~~~~~-------~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~Vv 422 (604)
T PRK13984 350 IHLNTRVGKDIP-------LEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLV 422 (604)
T ss_pred EECCCEeCCcCC-------HHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEE
Confidence 988843222110 111235799999999996 688889987541 011111111010 00 0022468999
Q ss_pred EEcCCchHHHHHHHHhhcC------CEEEEEEeCC---CCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820 210 VIGGGDSAMEEANFLTKYG------SKVYIIHRRD---SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK 280 (382)
Q Consensus 210 VvG~G~~a~e~a~~l~~~g------~~v~~~~~~~---~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~ 280 (382)
|||+|.+|+|+|..+.+++ .+|+++.... .++.......+. .++||+++++..+.++..+++ .+..++
T Consensus 423 VIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~-~~~GV~i~~~~~~~~i~~~~g--~v~~v~ 499 (604)
T PRK13984 423 VIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEG-LEEGVVIYPGWGPMEVVIEND--KVKGVK 499 (604)
T ss_pred EECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHH-HHcCCEEEeCCCCEEEEccCC--EEEEEE
Confidence 9999999999999998875 3678764321 122222222333 357999999999988865432 255555
Q ss_pred EEec--------------cCCceEEEecCeEEEeeCCCCChhhhcc----cccccCCCceeeCCCCCcCCCCceEEeccc
Q 016820 281 VKNL--------------VTGQVSDLKVSGLFFAIGHEPATKFVDG----QLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342 (382)
Q Consensus 281 ~~~~--------------~~~~~~~~~~D~vi~~~G~~p~~~~~~~----~~~~~~~g~i~vd~~~~~t~~~~vya~GD~ 342 (382)
+... .++++..+++|.|++++|++|+..++.. ++.. ++|++.||+ .++|++|+|||+||+
T Consensus 500 ~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~-~~~Ts~~gVfAaGD~ 577 (604)
T PRK13984 500 FKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNE-YGQTSIPWLFAGGDI 577 (604)
T ss_pred EEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCC-CCccCCCCEEEecCc
Confidence 5321 0234467999999999999999887652 2433 468899998 789999999999999
Q ss_pred CCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 343 QDKKYRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 343 ~~~~~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
+..+ ....|+.+|+.||.+|.++|.+
T Consensus 578 ~~~~--~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 578 VHGP--DIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCch--HHHHHHHHHHHHHHHHHHHhcc
Confidence 9743 4578999999999999999965
No 68
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.97 E-value=3.3e-29 Score=238.56 Aligned_cols=293 Identities=19% Similarity=0.285 Sum_probs=205.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHH--cCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAAR--AELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG 134 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~--~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 134 (382)
..++|+||||||||+++|..|++ .|++|+|+| ....+||.+.+. -.|++....++...+.+.+...+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E----~~p~pgGlvr~g-------vaP~~~~~k~v~~~~~~~~~~~~ 93 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIE----RLPTPFGLVRSG-------VAPDHPETKNVTNQFSRVATDDR 93 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEe----cCCCCcceEeec-------cCCCcchhHHHHHHHHHHHHHCC
Confidence 45789999999999999999987 699999999 455677766531 11344455667777777788888
Q ss_pred cEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC-cCCCCCCCccc----------cCCCcceeeeccCCCCCC
Q 016820 135 TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA-KKLQFPGSDAF----------WNRGISACAVCDGAAPIF 203 (382)
Q Consensus 135 i~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~-~~~~~~g~~~~----------~~~~~~~~~~~~~~~~~~ 203 (382)
++++.+.....+ +..++-...||+||+|+|+.+ +.+++||.+.- |.+....+...... ..
T Consensus 94 v~~~~nv~vg~d-------vtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~--~~ 164 (491)
T PLN02852 94 VSFFGNVTLGRD-------VSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPD--LK 164 (491)
T ss_pred eEEEcCEEECcc-------ccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhc--cc
Confidence 998776322111 111222347999999999975 67789997641 01110011000111 23
Q ss_pred CCCcEEEEcCCchHHHHHHHHhhc--------------------C-CEEEEEEeCCCCc--ch-H---------------
Q 016820 204 RDKPLAVIGGGDSAMEEANFLTKY--------------------G-SKVYIIHRRDSFR--AS-K--------------- 244 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~l~~~--------------------g-~~v~~~~~~~~~~--~~-~--------------- 244 (382)
.+++++|||+|++|+++|..|.+. + .+|+++.|+.... +. +
T Consensus 165 ~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~ 244 (491)
T PLN02852 165 SSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRI 244 (491)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceee
Confidence 578999999999999999998765 4 4699999988431 00 0
Q ss_pred -------------------------HHHHHhccC---------CCcEEEcCceeEEEEecC--CceeeeeEEEEec----
Q 016820 245 -------------------------IMQNRALTN---------PKIDVIWNSVVLEAYGEG--DKKVLGGLKVKNL---- 284 (382)
Q Consensus 245 -------------------------~~~~~~l~~---------~gv~~~~~~~v~~i~~~~--~g~~~~~v~~~~~---- 284 (382)
.++++...+ ++|.+++...+.+|..++ +| .+.++++...
T Consensus 245 ~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~-~v~~l~~~~~~l~~ 323 (491)
T PLN02852 245 KEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNG-HVAGVKLERTVLEG 323 (491)
T ss_pred chhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCC-cEEEEEEEEeecCC
Confidence 001111111 579999999999998532 23 4777777532
Q ss_pred ----------cCCceEEEecCeEEEeeCCC--CChhh-hc--ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhH
Q 016820 285 ----------VTGQVSDLKVSGLFFAIGHE--PATKF-VD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQ 349 (382)
Q Consensus 285 ----------~~~~~~~~~~D~vi~~~G~~--p~~~~-~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~ 349 (382)
.+++...++||.||.+.|++ |...+ +. .++..+.+|++.+|+ ..+|+.|+|||+|||...+.+.
T Consensus 324 ~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~-~~~T~ipGvyAaGDi~~Gp~gv 402 (491)
T PLN02852 324 AAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSA-SGADTEPGLYVVGWLKRGPTGI 402 (491)
T ss_pred CcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCC-CCccCCCCEEEeeeEecCCCCe
Confidence 13445679999999999998 44442 22 245667889999987 5678999999999999877779
Q ss_pred HHHHHhhHHHHHHHHHHHHHHc
Q 016820 350 AVTAAGTGCMAALEAEHYLQEI 371 (382)
Q Consensus 350 ~~~a~~~g~~aa~~i~~~l~~~ 371 (382)
+..++.+|+.++.+|.+++...
T Consensus 403 I~t~~~dA~~ta~~i~~d~~~~ 424 (491)
T PLN02852 403 IGTNLTCAEETVASIAEDLEQG 424 (491)
T ss_pred eeecHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999863
No 69
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.97 E-value=7.1e-29 Score=244.88 Aligned_cols=291 Identities=27% Similarity=0.383 Sum_probs=208.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||+|++|+++|..|+++|++|+++| .....||.+.. ++|......++.+.-.+.+.++|++
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e----~~~~~GG~l~~--------gip~~~~~~~~~~~~l~~~~~~Gv~ 203 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFE----AGPKLGGMMRY--------GIPAYRLPREVLDAEIQRILDLGVE 203 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe----cCCCCCCeeee--------cCCCccCCHHHHHHHHHHHHHCCCE
Confidence 45789999999999999999999999999999 45567776643 2333333456666666677889999
Q ss_pred EEEee-E-EEEEecCCcEEEEECCeEEEcCEEEEccCCCC-cCCCCCCCcccc-CCCcceeeeccCCCCCCCCCcEEEEc
Q 016820 137 IFTET-V-SKVDFKSRPFKVFTDSKSVLADTVIVATGAVA-KKLQFPGSDAFW-NRGISACAVCDGAAPIFRDKPLAVIG 212 (382)
Q Consensus 137 ~~~~~-v-~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~-~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~v~VvG 212 (382)
+..+. + .++..+. ....||+||+|+|..+ ..+.+++.+... ...+..............+++++|+|
T Consensus 204 ~~~~~~~~~~~~~~~---------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViG 274 (564)
T PRK12771 204 VRLGVRVGEDITLEQ---------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIG 274 (564)
T ss_pred EEeCCEECCcCCHHH---------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEEC
Confidence 88774 3 2221111 1125899999999964 455677754310 00000000000000134589999999
Q ss_pred CCchHHHHHHHHhhcC-CEEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc----
Q 016820 213 GGDSAMEEANFLTKYG-SKVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV---- 285 (382)
Q Consensus 213 ~G~~a~e~a~~l~~~g-~~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~---- 285 (382)
+|.++++.+..+.+++ .+|+++++.+.. ........+ ..+.||+++++..+.++..++++. + ++++....
T Consensus 275 gg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~-a~~~GVki~~~~~~~~i~~~~~~~-~-~v~~~~~~~~~~ 351 (564)
T PRK12771 275 GGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEE-ALREGVEINWLRTPVEIEGDENGA-T-GLRVITVEKMEL 351 (564)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHHHH-HHHcCCEEEecCCcEEEEcCCCCE-E-EEEEEEEEeccc
Confidence 9999999999998888 679999887642 333333333 445799999999999998766542 1 33332110
Q ss_pred ---------CCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHH
Q 016820 286 ---------TGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAA 354 (382)
Q Consensus 286 ---------~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~ 354 (382)
+++...+++|.||+++|..|+..++. .++. +++|++.+|+.+++|+.|+||++||+... ++++..|+
T Consensus 352 ~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g-~~~v~~Av 429 (564)
T PRK12771 352 DEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPG-PRTVTTAI 429 (564)
T ss_pred CCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCC-chHHHHHH
Confidence 24456899999999999999988776 3566 77899999998889999999999999863 67899999
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 016820 355 GTGCMAALEAEHYLQEIGS 373 (382)
Q Consensus 355 ~~g~~aa~~i~~~l~~~~~ 373 (382)
.+|+.+|.+|.++|.++..
T Consensus 430 ~~G~~aA~~i~~~L~g~~~ 448 (564)
T PRK12771 430 GHGKKAARNIDAFLGGEPY 448 (564)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 9999999999999987653
No 70
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.97 E-value=1.1e-29 Score=227.22 Aligned_cols=301 Identities=18% Similarity=0.201 Sum_probs=217.4
Q ss_pred cccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCC-CCChHHHHHHHHHHHHH
Q 016820 54 IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ-GILGGDLMDRCRNQSLR 132 (382)
Q Consensus 54 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 132 (382)
....+++|||+|+|++|.+++..|...-++|++|.+. ..+..+. -+|..+. .+....+.+..+...++
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPR--------nyFlFTP---LLpS~~vGTve~rSIvEPIr~i~r~ 119 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPR--------NYFLFTP---LLPSTTVGTVELRSIVEPIRAIARK 119 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccc--------cceEEee---ccCCccccceeehhhhhhHHHHhhc
Confidence 3456789999999999999999999999999999942 1111111 1111111 23345666777666655
Q ss_pred c--CcEEEEeeEEEEEecCCcEEEEE---CC----eEEEcCEEEEccCCCCcCCCCCCCcc--ccCCCcceeeec-----
Q 016820 133 F--GTQIFTETVSKVDFKSRPFKVFT---DS----KSVLADTVIVATGAVAKKLQFPGSDA--FWNRGISACAVC----- 196 (382)
Q Consensus 133 ~--gi~~~~~~v~~i~~~~~~~~v~~---~~----~~~~~d~lvlA~G~~~~~~~~~g~~~--~~~~~~~~~~~~----- 196 (382)
. +++++..+...||++++.++++. ++ -.+.||+||+|+|..++.+.+||..+ ++.+.+++.+..
T Consensus 120 k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~ 199 (491)
T KOG2495|consen 120 KNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVI 199 (491)
T ss_pred cCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHH
Confidence 5 67788888999999999887764 22 35899999999999999999999876 222333332211
Q ss_pred --------cCCC--CCCCCCcEEEEcCCchHHHHHHHHhhc--------------CCEEEEEEeCCCCcch-----HHHH
Q 016820 197 --------DGAA--PIFRDKPLAVIGGGDSAMEEANFLTKY--------------GSKVYIIHRRDSFRAS-----KIMQ 247 (382)
Q Consensus 197 --------~~~~--~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------g~~v~~~~~~~~~~~~-----~~~~ 247 (382)
.... +..+-.+++|||||++|+|+|.+|... -.+||++...+.+... ....
T Consensus 200 ~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~ya 279 (491)
T KOG2495|consen 200 DNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYA 279 (491)
T ss_pred HHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHH
Confidence 0000 012234799999999999999988854 1479999998866321 1223
Q ss_pred HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCC--ceeeC
Q 016820 248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDG--YIITK 325 (382)
Q Consensus 248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g--~i~vd 325 (382)
++.+.+.||.+..++.+..+.+.. +..+.. +|+..++++.+++|+||..|.+-.-......++.| .+.+|
T Consensus 280 e~~f~~~~I~~~~~t~Vk~V~~~~-------I~~~~~-~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vD 351 (491)
T KOG2495|consen 280 ENQFVRDGIDLDTGTMVKKVTEKT-------IHAKTK-DGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVD 351 (491)
T ss_pred HHHhhhccceeecccEEEeecCcE-------EEEEcC-CCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeee
Confidence 467888999999999999998887 666653 46668899999999999988654322122233444 89999
Q ss_pred CCCCcCCCCceEEecccCCc--hhhHHHHHHhhHHHHHHHHHHHHHHccC
Q 016820 326 PGTTHTSVPGVFAAGDVQDK--KYRQAVTAAGTGCMAALEAEHYLQEIGS 373 (382)
Q Consensus 326 ~~~~~t~~~~vya~GD~~~~--~~~~~~~a~~~g~~aa~~i~~~l~~~~~ 373 (382)
++++..+.+||||+|||+.. .++++..|.+||.++|++...-......
T Consensus 352 E~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~ 401 (491)
T KOG2495|consen 352 EWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGGNL 401 (491)
T ss_pred ceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 98888899999999999932 2559999999999999999877765443
No 71
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.97 E-value=8e-30 Score=232.26 Aligned_cols=287 Identities=24% Similarity=0.313 Sum_probs=213.3
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
..+++|||+|++|..|+..+++.|. +++|+-+. -.. +.+...++.+.. .....+.....++.++++|
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~--------~~~--pydr~~Ls~~~~-~~~~~~a~r~~e~Yke~gI 142 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE--------YLL--PYDRARLSKFLL-TVGEGLAKRTPEFYKEKGI 142 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEecc--------ccC--cccchhccccee-eccccccccChhhHhhcCc
Confidence 5789999999999999999999974 56666421 000 001111111111 1223444455556788899
Q ss_pred EEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEEE
Q 016820 136 QIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVI 211 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~Vv 211 (382)
+++.+ .|+.+|...+.+.+. +++.+.|++++||||+.++.+++||.+. +..+.+...+..... ......|+++
T Consensus 143 e~~~~t~v~~~D~~~K~l~~~-~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~--~~~~~~vV~v 219 (478)
T KOG1336|consen 143 ELILGTSVVKADLASKTLVLG-NGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAA--IQLGGKVVCV 219 (478)
T ss_pred eEEEcceeEEeeccccEEEeC-CCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHH--hccCceEEEE
Confidence 99999 699999988876554 6778999999999999999999999875 222333333322332 3447889999
Q ss_pred cCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc
Q 016820 212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV 285 (382)
Q Consensus 212 G~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~ 285 (382)
|+|..++|++..|...+++||++++.+.+.. .....+.++++.||+++.++.+.+++.+.+|+ +..|.+.+
T Consensus 220 G~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Ge-v~~V~l~d-- 296 (478)
T KOG1336|consen 220 GGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGE-VSEVKLKD-- 296 (478)
T ss_pred CchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCc-EEEEEecc--
Confidence 9999999999999999999999999887632 22333578899999999999999999998875 54566654
Q ss_pred CCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchh---------hHHHHHHhh
Q 016820 286 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY---------RQAVTAAGT 356 (382)
Q Consensus 286 ~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~---------~~~~~a~~~ 356 (382)
+ .++++|.+++.+|.+|++.+++.+...++.|++.||+ +++|++|||||+||++..+. ..+..|..+
T Consensus 297 -g--~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~-~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~ 372 (478)
T KOG1336|consen 297 -G--KTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDE-FFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARAS 372 (478)
T ss_pred -C--CEeccCeEEEeeccccccccccccceecccCCEeehh-ceeeccCCcccccceeecccccccccccchHHHHHHHH
Confidence 4 7899999999999999999997677788999999999 89999999999999996432 234455555
Q ss_pred HHHHHHHHH
Q 016820 357 GCMAALEAE 365 (382)
Q Consensus 357 g~~aa~~i~ 365 (382)
|+.+...|.
T Consensus 373 g~~av~ai~ 381 (478)
T KOG1336|consen 373 GRQAVKAIK 381 (478)
T ss_pred HHhhhhhhh
Confidence 555444443
No 72
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.97 E-value=6e-29 Score=238.39 Aligned_cols=274 Identities=23% Similarity=0.255 Sum_probs=194.8
Q ss_pred HHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCC-CC-hHHHHHHH-HHHHHHcCcEEEEe-eEEEE
Q 016820 72 TAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG-IL-GGDLMDRC-RNQSLRFGTQIFTE-TVSKV 145 (382)
Q Consensus 72 ~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~gi~~~~~-~v~~i 145 (382)
++|.+|+++ .++|+|||+.. ... ..+.. ++.+..+ .. .+++..+. .++..++|++++.+ +|+.+
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~----~~~---~~~~~---l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~i 70 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTE----DVS---FANCG---LPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEV 70 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCC----cee---EEcCC---CCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEE
Confidence 478888887 47899999532 110 00000 1111111 11 23334333 34557889998766 89999
Q ss_pred EecCCcEEEEEC--CeEEE--cCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHH
Q 016820 146 DFKSRPFKVFTD--SKSVL--ADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAM 218 (382)
Q Consensus 146 ~~~~~~~~v~~~--~~~~~--~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~ 218 (382)
+++++.+.+... +..+. ||+||+|||++|+.|++||.+. +....+..+...........+++++|||+|.+|+
T Consensus 71 d~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~ 150 (427)
T TIGR03385 71 NDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGI 150 (427)
T ss_pred ECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHH
Confidence 988888877653 34577 9999999999999999998652 1112222222111111113468999999999999
Q ss_pred HHHHHHhhcCCEEEEEEeCCCCc---c---hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820 219 EEANFLTKYGSKVYIIHRRDSFR---A---SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL 292 (382)
Q Consensus 219 e~a~~l~~~g~~v~~~~~~~~~~---~---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~ 292 (382)
|+|..|.+.|.+|+++.+.+.+. . ......+.+++.||+++++..+.+++.++. + +.+.+ + ..+
T Consensus 151 e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~---~--v~~~~---g--~~i 220 (427)
T TIGR03385 151 EMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER---V--KVFTS---G--GVY 220 (427)
T ss_pred HHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC---E--EEEcC---C--CEE
Confidence 99999999999999999887652 1 122234567788999999999999987542 1 23322 3 469
Q ss_pred ecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---------hhhHHHHHHhhHHHHHH
Q 016820 293 KVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---------KYRQAVTAAGTGCMAAL 362 (382)
Q Consensus 293 ~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---------~~~~~~~a~~~g~~aa~ 362 (382)
++|.+++++|.+|+.+++. .++.++++|++.||+ .++|+.|+|||+|||+.. .++.+..|.+||+.+|+
T Consensus 221 ~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~-~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ 299 (427)
T TIGR03385 221 QADMVILATGIKPNSELAKDSGLKLGETGAIWVNE-KFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGE 299 (427)
T ss_pred EeCEEEECCCccCCHHHHHhcCcccCCCCCEEECC-CcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHH
Confidence 9999999999999998876 467788889999998 688999999999999852 13578899999999999
Q ss_pred HHHH
Q 016820 363 EAEH 366 (382)
Q Consensus 363 ~i~~ 366 (382)
||..
T Consensus 300 ni~g 303 (427)
T TIGR03385 300 NIAG 303 (427)
T ss_pred HhcC
Confidence 9963
No 73
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.1e-29 Score=215.18 Aligned_cols=301 Identities=19% Similarity=0.230 Sum_probs=217.1
Q ss_pred ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEec---c-cCCCCCCCcceecCCCccc------------------CCC
Q 016820 55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEG---W-MANDIAPGGQLTTTSDVEN------------------FPG 112 (382)
Q Consensus 55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~---~-~~~~~~~gg~~~~~~~~~~------------------~~~ 112 (382)
...++|++|||||.+||+||.+++.+|.+|.++|- . .+..|-.||++....+++. |..
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 34679999999999999999999999999999993 1 2334667777765443211 100
Q ss_pred C-C---CCCChHHHHHHHHHHHHHcC----cEEEEeeEEEEEec-----CCcEEEEE-CC--eEEEcCEEEEccCCCCcC
Q 016820 113 F-P---QGILGGDLMDRCRNQSLRFG----TQIFTETVSKVDFK-----SRPFKVFT-DS--KSVLADTVIVATGAVAKK 176 (382)
Q Consensus 113 ~-~---~~~~~~~~~~~~~~~~~~~g----i~~~~~~v~~i~~~-----~~~~~v~~-~~--~~~~~d~lvlA~G~~~~~ 176 (382)
. + -..++..+.+..+...+..+ +.++..+|.-++.- ...+.... ++ ..+.++.+|+|||.+|++
T Consensus 96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrY 175 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRY 175 (503)
T ss_pred CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCC
Confidence 0 0 12355667777777666553 22322244444321 11222222 22 348899999999999999
Q ss_pred CCCCCCccccC--CCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-hHHH---HHHh
Q 016820 177 LQFPGSDAFWN--RGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-SKIM---QNRA 250 (382)
Q Consensus 177 ~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-~~~~---~~~~ 250 (382)
|.+||..++.. +.+++. ...+.+.+|||+|++++|+|.+|.-.|.+||+..|+-.++. .+.+ ..+.
T Consensus 176 p~IpG~~Ey~ITSDDlFsl--------~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~ 247 (503)
T KOG4716|consen 176 PDIPGAKEYGITSDDLFSL--------PYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEH 247 (503)
T ss_pred CCCCCceeeeecccccccc--------cCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHH
Confidence 99999877333 233333 33467799999999999999999999999999999876643 2222 2466
Q ss_pred ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---cccccc-CCCceeeCC
Q 016820 251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLH-SDGYIITKP 326 (382)
Q Consensus 251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~-~~g~i~vd~ 326 (382)
|++.||.+.....+.+++..++|+.. |......++++.+-++|.|+|+.|+.+.+.-+. .++..| .+|.|.+|+
T Consensus 248 m~~~Gikf~~~~vp~~Veq~~~g~l~--v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~ 325 (503)
T KOG4716|consen 248 MEERGIKFLRKTVPERVEQIDDGKLR--VFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDD 325 (503)
T ss_pred HHHhCCceeecccceeeeeccCCcEE--EEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccCh
Confidence 88899999999899999998887522 333433344445668999999999999988665 456664 468999998
Q ss_pred CCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820 327 GTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366 (382)
Q Consensus 327 ~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~ 366 (382)
..+|+.|+|||+||+....+.....|++.|+..|+++-.
T Consensus 326 -~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 326 -EEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred -HHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence 789999999999999987888899999999999988754
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.96 E-value=2e-27 Score=246.89 Aligned_cols=285 Identities=22% Similarity=0.249 Sum_probs=204.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc-Cc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF-GT 135 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi 135 (382)
..+||+||||||||+++|..|++.|++|+|+| .....||.+.... .........++...+.+.+..+ ++
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD----~~~~~GG~~~~~~------~~~~g~~~~~~~~~~~~~l~~~~~v 231 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVD----EQPEAGGSLLSEA------ETIDGKPAADWAAATVAELTAMPEV 231 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEe----cCCCCCCeeeccc------cccCCccHHHHHHHHHHHHhcCCCc
Confidence 46899999999999999999999999999999 5556788775422 1112344566666666666666 48
Q ss_pred EEEEe-eEEEEEecCCcEEEE-------------ECC--eEEEcCEEEEccCCCCcCCCCCCCccccCCCccee----ee
Q 016820 136 QIFTE-TVSKVDFKSRPFKVF-------------TDS--KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISAC----AV 195 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~~~~~v~-------------~~~--~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~----~~ 195 (382)
+++.+ +|..+........+. ..+ ..+.||+||||||+.++.+++||.+. ..+..+ .+
T Consensus 232 ~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~---pgV~~~~~~~~~ 308 (985)
T TIGR01372 232 TLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDR---PGVMLAGAARTY 308 (985)
T ss_pred EEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCC---CCcEEchHHHHH
Confidence 88877 677765422111111 001 15899999999999999999999764 222221 11
Q ss_pred ccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCce
Q 016820 196 CDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKK 274 (382)
Q Consensus 196 ~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~ 274 (382)
+... ....+++++|+|+|++++++|..|.+.|. .|+++++.+.+ ...+ .+.+++.||+++.+..+.++..++.
T Consensus 309 l~~~-~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--~~~l-~~~L~~~GV~i~~~~~v~~i~g~~~-- 382 (985)
T TIGR01372 309 LNRY-GVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--SPEA-RAEARELGIEVLTGHVVAATEGGKR-- 382 (985)
T ss_pred HHhh-CcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--hHHH-HHHHHHcCCEEEcCCeEEEEecCCc--
Confidence 1111 13357999999999999999999999994 57888776644 2233 3457788999999999999987653
Q ss_pred eeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCC--CceeeCCCCCcCCCCceEEecccCCchhhH
Q 016820 275 VLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSD--GYIITKPGTTHTSVPGVFAAGDVQDKKYRQ 349 (382)
Q Consensus 275 ~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~--g~i~vd~~~~~t~~~~vya~GD~~~~~~~~ 349 (382)
++.|++... .+++..+++|.|+++.|.+|++.++. +.+.+++. +|+. .|+.|+||++||+.+. ..
T Consensus 383 -v~~V~l~~~-~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~--~~ 452 (985)
T TIGR01372 383 -VSGVAVARN-GGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGL--FG 452 (985)
T ss_pred -EEEEEEEec-CCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCc--cC
Confidence 455666631 24557899999999999999999875 23333332 2221 3668999999999964 47
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 016820 350 AVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 350 ~~~a~~~g~~aa~~i~~~l~~ 370 (382)
+..|+.+|..||..|+..+..
T Consensus 453 ~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 453 LAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 788999999999999988864
No 75
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.96 E-value=6.1e-29 Score=236.50 Aligned_cols=290 Identities=22% Similarity=0.277 Sum_probs=222.0
Q ss_pred cccEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG 134 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 134 (382)
+.++||||.|++|..+..++.+. -++++++-.. ..+.-.... --+.++...+.+++.-.-..+.++++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~E----p~~nY~Ri~-----Ls~vl~~~~~~edi~l~~~dwy~~~~ 73 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEE----PRPNYNRIL-----LSSVLAGEKTAEDISLNRNDWYEENG 73 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccC----CCcccccee-----eccccCCCccHHHHhccchhhHHHcC
Confidence 46899999999999999999884 4788888632 111111110 00122223455666666677889999
Q ss_pred cEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEE
Q 016820 135 TQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAV 210 (382)
Q Consensus 135 i~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~V 210 (382)
|+++.+ .|+.||.+++.++.. .+.++.||.||+|||+.|..+++||.+. +..+++.+....... ....++.+|
T Consensus 74 i~L~~~~~v~~idr~~k~V~t~-~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~--ar~~~~avV 150 (793)
T COG1251 74 ITLYTGEKVIQIDRANKVVTTD-AGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDC--ARNKKKAVV 150 (793)
T ss_pred cEEEcCCeeEEeccCcceEEcc-CCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHH--HhccCCcEE
Confidence 999999 799999988754332 5667999999999999999999999885 333444443322222 223456899
Q ss_pred EcCCchHHHHHHHHhhcCCEEEEEEeCCCC------cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec
Q 016820 211 IGGGDSAMEEANFLTKYGSKVYIIHRRDSF------RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL 284 (382)
Q Consensus 211 vG~G~~a~e~a~~l~~~g~~v~~~~~~~~~------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~ 284 (382)
||+|..|+|.|.-|.+.|.++++++-.+.+ +...+++++.+++.|++++++...+++..... ++++++++
T Consensus 151 IGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~---~~~vr~~D- 226 (793)
T COG1251 151 IGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDK---VEGVRFAD- 226 (793)
T ss_pred EccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcc---eeeEeecC-
Confidence 999999999999999999999999998876 34566677889999999999988888887443 66788776
Q ss_pred cCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch---hhHHHHHHhhHHHH
Q 016820 285 VTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---YRQAVTAAGTGCMA 360 (382)
Q Consensus 285 ~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---~~~~~~a~~~g~~a 360 (382)
+ ..+++|.|++++|.+|+..+.. +++.+++ .|.||+ +++|++|+|||+|+|+.+. +.....+..|++.+
T Consensus 227 --G--~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd-~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~ 299 (793)
T COG1251 227 --G--TEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVND-YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVL 299 (793)
T ss_pred --C--CcccceeEEEecccccccHhHHhcCcCcCC--Ceeecc-cccccCCCeeehhhHHHhcCccceehhHHHHHHHHH
Confidence 5 6799999999999999999886 6888877 889998 8999999999999999643 56677788888888
Q ss_pred HHHHHHHHHH
Q 016820 361 ALEAEHYLQE 370 (382)
Q Consensus 361 a~~i~~~l~~ 370 (382)
|.++.....+
T Consensus 300 a~hl~~~~~~ 309 (793)
T COG1251 300 ADHLCGGEAE 309 (793)
T ss_pred HHHhccCccc
Confidence 8877665443
No 76
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.95 E-value=7.5e-27 Score=226.02 Aligned_cols=284 Identities=23% Similarity=0.283 Sum_probs=173.7
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC-------------------CcccCCC------C
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS-------------------DVENFPG------F 113 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~-------------------~~~~~~~------~ 113 (382)
++|+|||||++||.+|+.|.+.|++++++| +...+||.|.... ....|+. +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE----~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~ 77 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFE----KSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY 77 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEE----SSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEe----cCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC
Confidence 689999999999999999999999999999 6778888886421 1111222 2
Q ss_pred CCCCChHHHHHHHHHHHHHcCcE--EEEe-eEEEEEecC-----CcEEEEECC----eEEEcCEEEEccCC--CCcCCC-
Q 016820 114 PQGILGGDLMDRCRNQSLRFGTQ--IFTE-TVSKVDFKS-----RPFKVFTDS----KSVLADTVIVATGA--VAKKLQ- 178 (382)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~gi~--~~~~-~v~~i~~~~-----~~~~v~~~~----~~~~~d~lvlA~G~--~~~~~~- 178 (382)
|..+...++.+|++.+++++++. +..+ +|.++++.+ +.|.+.++. .+-.+|+||+|+|. .|+.|.
T Consensus 78 p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~ 157 (531)
T PF00743_consen 78 PDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEP 157 (531)
T ss_dssp SSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB---
T ss_pred CCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChh
Confidence 34567899999999999999874 5556 688887754 358887632 23569999999998 588884
Q ss_pred -CCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchH-------------
Q 016820 179 -FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASK------------- 244 (382)
Q Consensus 179 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~------------- 244 (382)
+||.+.|.+..+|...|.+.. .+.+|+|+|||+|.+|+++|.+|.+..++|++..|++.+...+
T Consensus 158 ~~~G~e~F~G~i~HS~~yr~~~--~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~ 235 (531)
T PF00743_consen 158 SFPGLEKFKGEIIHSKDYRDPE--PFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFS 235 (531)
T ss_dssp --CTGGGHCSEEEEGGG--TGG--GGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------------
T ss_pred hhhhhhcCCeeEEccccCcChh--hcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccc
Confidence 899999988999999888776 7889999999999999999999999999999888877651100
Q ss_pred -----------------HHHHHhc--------------------------------cCCCcEEEcCceeEEEEecCCcee
Q 016820 245 -----------------IMQNRAL--------------------------------TNPKIDVIWNSVVLEAYGEGDKKV 275 (382)
Q Consensus 245 -----------------~~~~~~l--------------------------------~~~gv~~~~~~~v~~i~~~~~g~~ 275 (382)
.+.++.+ ....|.+ ...|.+++++
T Consensus 236 ~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~v--k~~I~~~~~~----- 308 (531)
T PF00743_consen 236 TRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKV--KPDIKRFTEN----- 308 (531)
T ss_dssp -----------------------------------------------------------------EE-EEEE-SS-----
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc-----
Confidence 0000000 0000111 0112222211
Q ss_pred eeeEEEEeccCCceEE-EecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcC--CCCceEEecccCCchhhHHHH
Q 016820 276 LGGLKVKNLVTGQVSD-LKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHT--SVPGVFAAGDVQDKKYRQAVT 352 (382)
Q Consensus 276 ~~~v~~~~~~~~~~~~-~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t--~~~~vya~GD~~~~~~~~~~~ 352 (382)
+|.+++ | .. .++|.||+|||++...++++..+....++.+....+.+.. .+|++..+|=+... ......
T Consensus 309 --~v~F~D---G--s~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-g~~fp~ 380 (531)
T PF00743_consen 309 --SVIFED---G--STEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-GSIFPI 380 (531)
T ss_dssp --EEEETT---S--EEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-S-HHHH
T ss_pred --cccccc---c--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 144432 3 44 4799999999999999999844332334444455544433 45899999987531 122334
Q ss_pred HHhhHHHHHHH
Q 016820 353 AAGTGCMAALE 363 (382)
Q Consensus 353 a~~~g~~aa~~ 363 (382)
+-.||+.+|.-
T Consensus 381 ~ElQArw~a~v 391 (531)
T PF00743_consen 381 FELQARWAARV 391 (531)
T ss_dssp HHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 55666655543
No 77
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.92 E-value=2.6e-24 Score=203.06 Aligned_cols=291 Identities=28% Similarity=0.312 Sum_probs=212.5
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
.++|+||||||+|+++|..|++.|++|+++| .....||.+.+ ++|......++.+...+.+++.|++|
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e----~~~~~GGll~y--------GIP~~kl~k~i~d~~i~~l~~~Gv~~ 190 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFE----RVALDGGLLLY--------GIPDFKLPKDILDRRLELLERSGVEF 190 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeC----CcCCCceeEEe--------cCchhhccchHHHHHHHHHHHcCeEE
Confidence 3899999999999999999999999999999 67788888886 56777778899999999999999999
Q ss_pred EEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCcc--------ccCCCc-ceeeecc-CCCCCCCCC
Q 016820 138 FTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDA--------FWNRGI-SACAVCD-GAAPIFRDK 206 (382)
Q Consensus 138 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~--------~~~~~~-~~~~~~~-~~~~~~~~~ 206 (382)
+.+.....+.. .+.-.-.||++++|+|. .|+..++||.+. |..... ....... .......++
T Consensus 191 ~~~~~vG~~it-------~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk 263 (457)
T COG0493 191 KLNVRVGRDIT-------LEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGK 263 (457)
T ss_pred EEcceECCcCC-------HHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCC
Confidence 88853332211 11222356999999999 688889999864 111110 0000000 111133459
Q ss_pred cEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCC---c----chHHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSF---R----ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG 278 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~---~----~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~ 278 (382)
+++|||+|.++++++....+.|. +|+.+.+...- . ....+.-+....+|+...+.....++..+.+|+ +..
T Consensus 264 ~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~Gr-V~~ 342 (457)
T COG0493 264 RVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGR-VTG 342 (457)
T ss_pred eEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCc-Eee
Confidence 99999999999999999999986 67777522211 1 111112234556788888888888998877764 333
Q ss_pred EEEEec----------------cCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCceEEe
Q 016820 279 LKVKNL----------------VTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGVFAA 339 (382)
Q Consensus 279 v~~~~~----------------~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~vya~ 339 (382)
+.+... ..++...+++|.++.+.|+.++..... ..+..+..|.+.+++...+|+.|++||.
T Consensus 343 ~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~ 422 (457)
T COG0493 343 VKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAG 422 (457)
T ss_pred eecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeC
Confidence 322221 125557889999999999998865532 2567888999999995559999999999
Q ss_pred cccCCchhhHHHHHHhhHHHHHHHHHHHHH
Q 016820 340 GDVQDKKYRQAVTAAGTGCMAALEAEHYLQ 369 (382)
Q Consensus 340 GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~ 369 (382)
||+... ......|+.+|+.+|+.|..++.
T Consensus 423 gD~~~g-~~~vv~ai~eGr~aak~i~~~~l 451 (457)
T COG0493 423 GDAVRG-AALVVWAIAEGREAAKAIDKELL 451 (457)
T ss_pred ceeccc-hhhhhhHHhhchHHHHhhhHHHH
Confidence 999974 57899999999999999994443
No 78
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.90 E-value=6.2e-23 Score=176.92 Aligned_cols=169 Identities=28% Similarity=0.399 Sum_probs=120.5
Q ss_pred EEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCc---------c---cCCCC--------------C
Q 016820 62 CIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDV---------E---NFPGF--------------P 114 (382)
Q Consensus 62 vIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~---------~---~~~~~--------------~ 114 (382)
+|||||++|+++|..|.++|.+ ++|+| ....+||.|...... . .++.+ .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e----~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLE----RNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPH 76 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEE----SSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEe----CCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCc
Confidence 7999999999999999999999 99999 555677776531100 0 00110 1
Q ss_pred CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe-EEEcCEEEEccCC--CCcCCCCCC-CccccCCC
Q 016820 115 QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK-SVLADTVIVATGA--VAKKLQFPG-SDAFWNRG 189 (382)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~-~~~~d~lvlA~G~--~~~~~~~~g-~~~~~~~~ 189 (382)
.....+++.+|+++++++++++++.+ +|+++..+++.|.+++.++ ++++|+||+|||. .|+.|.++| ... ..
T Consensus 77 ~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~---~~ 153 (203)
T PF13738_consen 77 DFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR---PI 153 (203)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS---EE
T ss_pred ccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc---ce
Confidence 13466889999999999999998877 6999999998999999876 8999999999997 788899998 222 44
Q ss_pred cceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 190 ISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
+|...+.+.. ...+++|+|||+|.+|++++..|.+.+.+|+++.|++.
T Consensus 154 ~h~~~~~~~~--~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 154 IHSADWRDPE--DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp EEGGG-STTG--GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred EehhhcCChh--hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 5555554444 56789999999999999999999999999999999875
No 79
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=5.7e-22 Score=186.32 Aligned_cols=232 Identities=22% Similarity=0.290 Sum_probs=172.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc-------------------ccCCCCC---
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV-------------------ENFPGFP--- 114 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~-------------------~~~~~~~--- 114 (382)
..++|+|||||+|||.+|+.|.+.|++++++| +...+||.|.+.... ..++.+|
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfE----r~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~ 80 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFE----RTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE 80 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEE----ecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence 46899999999999999999999999999999 677889988766211 1222222
Q ss_pred ---C-CCChHHHHHHHHHHHHHcCcE--EEEe-eEEEEEecC-CcEEEEECC-----eEEEcCEEEEccCCC--CcCCCC
Q 016820 115 ---Q-GILGGDLMDRCRNQSLRFGTQ--IFTE-TVSKVDFKS-RPFKVFTDS-----KSVLADTVIVATGAV--AKKLQF 179 (382)
Q Consensus 115 ---~-~~~~~~~~~~~~~~~~~~gi~--~~~~-~v~~i~~~~-~~~~v~~~~-----~~~~~d~lvlA~G~~--~~~~~~ 179 (382)
. .++..++.+||+.+++++++. +..+ +|..++... +.|.+.+.+ ...-+|.|++|+|.. |+.|.+
T Consensus 81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence 1 256679999999999999874 4444 577888877 688887632 257799999999996 899999
Q ss_pred CC--CccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcE
Q 016820 180 PG--SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKID 257 (382)
Q Consensus 180 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~ 257 (382)
+| .+.|.+..+|.+.|.... .+.+|+|+|||+|++|+|++..+++...+|++..+ . +...... ......++.
T Consensus 161 ~g~~~~~f~G~~iHS~~Yk~~e--~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~-~~~~~~~--~~~~~~~~~ 234 (448)
T KOG1399|consen 161 PGPGIESFKGKIIHSHDYKSPE--KFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-S-PKVHVEP--PEILGENLW 234 (448)
T ss_pred CCCchhhcCCcceehhhccCcc--cccCceEEEECCCccHHHHHHHHHHhccCcceeee-c-ccccccc--cceeecceE
Confidence 88 457888999999998777 78899999999999999999999988888887765 1 0000000 001112333
Q ss_pred EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820 258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD 311 (382)
Q Consensus 258 ~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~ 311 (382)
.+ ..|+..++++ +.+.. ......+|.+|+|||+.-..++++
T Consensus 235 ~~--~~i~~~~e~~-------~~~~~----~~~~~~~D~ii~ctgy~y~fPfl~ 275 (448)
T KOG1399|consen 235 QV--PSIKSFTEDG-------SVFEK----GGPVERVDRIIFCTGYKYKFPFLE 275 (448)
T ss_pred Ec--cccccccCcc-------eEEEc----CceeEEeeeEEEeeeeEeecceec
Confidence 32 2266666655 44443 235678999999999999888887
No 80
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.90 E-value=1.3e-22 Score=186.65 Aligned_cols=245 Identities=23% Similarity=0.233 Sum_probs=150.9
Q ss_pred cccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcceecCCCcccC---------CCCC-------------
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQLTTTSDVENF---------PGFP------------- 114 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~~~~~~~~~~~---------~~~~------------- 114 (382)
.+|+++||.||++|++|..|.+.+ .++.++|+.....|.+|..+.....-..+ |.-+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 479999999999999999999996 99999998777777776654432211111 1000
Q ss_pred --------CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC----cEEEEE-----CCeEEEcCEEEEccCCCCcC
Q 016820 115 --------QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR----PFKVFT-----DSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 115 --------~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~----~~~v~~-----~~~~~~~d~lvlA~G~~~~~ 176 (382)
..+...++.+|+++.+++++-.+..+ +|++|++..+ .|.|.+ ++..+.++.||+|+|..|..
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI 161 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence 13577899999999999998657667 7999988765 388887 34569999999999999888
Q ss_pred CCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCC--EEEEEEeCCCCcc------------
Q 016820 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGS--KVYIIHRRDSFRA------------ 242 (382)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~--~v~~~~~~~~~~~------------ 242 (382)
|..........+.+|..++..........++|+|||+|.+|.|++..|.+.+. +|+++.|++.+..
T Consensus 162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~ 241 (341)
T PF13434_consen 162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS 241 (341)
T ss_dssp -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence 75332211112445555554443225568999999999999999999998874 8999999997710
Q ss_pred ------------------------------hHH--------HH-HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820 243 ------------------------------SKI--------MQ-NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN 283 (382)
Q Consensus 243 ------------------------------~~~--------~~-~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~ 283 (382)
... +. +++..+..++++.++.|..++..++|+ ..+.+.+
T Consensus 242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~--~~l~~~~ 319 (341)
T PF13434_consen 242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG--VRLTLRH 319 (341)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS--EEEEEEE
T ss_pred chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE--EEEEEEE
Confidence 000 00 122334568999999999999988543 2356666
Q ss_pred ccCCceEEEecCeEEEeeCCC
Q 016820 284 LVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 284 ~~~~~~~~~~~D~vi~~~G~~ 304 (382)
...+....+.+|.||+|||++
T Consensus 320 ~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 320 RQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp TTT--EEEEEESEEEE---EE
T ss_pred CCCCCeEEEecCEEEEcCCcc
Confidence 556667889999999999986
No 81
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.89 E-value=8.4e-22 Score=188.49 Aligned_cols=287 Identities=21% Similarity=0.193 Sum_probs=192.4
Q ss_pred EEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCC-ChHHHHHHHHHHHHHcCcEE
Q 016820 61 VCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI-LGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 61 vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~ 137 (382)
++|||+|++|+++|..+.+. +.+++++...........+.... ..... ....+..... ...+.++++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~i~~ 70 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLY---------VGGGIASLEDLRYPPR-FNRATGIDV 70 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchH---------HhcccCCHHHhcccch-hHHhhCCEE
Confidence 58999999999999999886 56787776321111111100000 00001 1111111111 224668888
Q ss_pred EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCc-cccCCCcceeeeccCCCCCCCCCcEEEEcCCc
Q 016820 138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD-AFWNRGISACAVCDGAAPIFRDKPLAVIGGGD 215 (382)
Q Consensus 138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~ 215 (382)
..+ +|..++++.+.+.+. ++.+.||++++|||.+|..++..... .+..+........... ....++++|+|+|+
T Consensus 71 ~~~~~v~~id~~~~~v~~~--~g~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~vvG~G~ 146 (415)
T COG0446 71 RTGTEVTSIDPENKVVLLD--DGEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGG--AEPPKDVVVVGAGP 146 (415)
T ss_pred eeCCEEEEecCCCCEEEEC--CCcccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHH--HhccCeEEEECCcH
Confidence 887 699999988865554 33899999999999999887611111 0111222222222221 11258999999999
Q ss_pred hHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCce
Q 016820 216 SAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV 289 (382)
Q Consensus 216 ~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~ 289 (382)
.|+++|..+.+.|++|++++..+.+.. ......+.+++.||+++++..+.+++...+.. ....... ..+
T Consensus 147 ~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~--~~~~~~~---~~~ 221 (415)
T COG0446 147 IGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTL--VVERVVG---IDG 221 (415)
T ss_pred HHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcc--eeeEEEE---eCC
Confidence 999999999999999999999887732 22333567888999999999999999987531 1100122 334
Q ss_pred EEEecCeEEEeeCCCCChhhhcccc--cccCCCceeeCCCCCcCC-CCceEEecccCCch---------hhHHHHHHhhH
Q 016820 290 SDLKVSGLFFAIGHEPATKFVDGQL--DLHSDGYIITKPGTTHTS-VPGVFAAGDVQDKK---------YRQAVTAAGTG 357 (382)
Q Consensus 290 ~~~~~D~vi~~~G~~p~~~~~~~~~--~~~~~g~i~vd~~~~~t~-~~~vya~GD~~~~~---------~~~~~~a~~~g 357 (382)
..+++|.+++++|.+|+..+..... .....|++.||+ .++++ .++||++|||+... ...+..+..++
T Consensus 222 ~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~-~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~ 300 (415)
T COG0446 222 EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDE-RGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAG 300 (415)
T ss_pred cEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEcc-ccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhh
Confidence 6799999999999999977776433 456788999999 66666 99999999987532 33456777888
Q ss_pred HHHHHHHHHH
Q 016820 358 CMAALEAEHY 367 (382)
Q Consensus 358 ~~aa~~i~~~ 367 (382)
+.++.++...
T Consensus 301 ~i~~~~~~~~ 310 (415)
T COG0446 301 RIAAENIAGA 310 (415)
T ss_pred HHHHHHhccc
Confidence 8888877743
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.88 E-value=4.3e-21 Score=191.88 Aligned_cols=275 Identities=18% Similarity=0.164 Sum_probs=174.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC--C---------------------C-CCCcceecCCCcccCC
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN--D---------------------I-APGGQLTTTSDVENFP 111 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--~---------------------~-~~gg~~~~~~~~~~~~ 111 (382)
...++|+||||||||+++|+.|++.|++|+++|+.... . . ..||...+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~y-------- 452 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEY-------- 452 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCccccc--------
Confidence 35689999999999999999999999999999952100 0 0 02222211
Q ss_pred CCCCCCChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCcEEEEECC-eEEEcCEEEEccCC-CCcCCCCCCCccccCC
Q 016820 112 GFPQGILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGA-VAKKLQFPGSDAFWNR 188 (382)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~-~~~~~~~~g~~~~~~~ 188 (382)
++|. ....+..+.++..... .+++++.+.....+... +. ....||+|++|||+ .|+.+++||.+. .
T Consensus 453 GIp~-R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~-------edl~~~gyDAV~IATGA~kpr~L~IPGeda---~ 521 (1028)
T PRK06567 453 GITV-RWDKNNLDILRLILERNNNFKYYDGVALDFNITK-------EQAFDLGFDHIAFCIGAGQPKVLDIENFEA---K 521 (1028)
T ss_pred Cccc-cchHHHHHHHHHHHhcCCceEEECCeEECccCCH-------HHHhhcCCCEEEEeCCCCCCCCCCCCCccC---C
Confidence 1221 1123333333333222 24555556432222111 11 23579999999999 799999999764 1
Q ss_pred Cccee-eecc-----------CCCCCCCCCcEEEEcCCchHHHHHHHHhh------------------------------
Q 016820 189 GISAC-AVCD-----------GAAPIFRDKPLAVIGGGDSAMEEANFLTK------------------------------ 226 (382)
Q Consensus 189 ~~~~~-~~~~-----------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~------------------------------ 226 (382)
.+... +++. .......+++|+|||||++|+|+|.....
T Consensus 522 GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~ 601 (1028)
T PRK06567 522 GVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFI 601 (1028)
T ss_pred CeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHH
Confidence 11110 0000 00012246899999999999999983321
Q ss_pred ---------------------cCCEEEEEEeCCCCc--ch---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820 227 ---------------------YGSKVYIIHRRDSFR--AS---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK 280 (382)
Q Consensus 227 ---------------------~g~~v~~~~~~~~~~--~~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~ 280 (382)
.| .|++++|+..-. .. .+..+. ..++||+++....+.+|..++.|+ +.+++
T Consensus 602 ~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~~~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~-v~~l~ 678 (1028)
T PRK06567 602 AHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPAYKLNHEELIY-ALALGVDFKENMQPLRINVDKYGH-VESVE 678 (1028)
T ss_pred HHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCCCCCCHHHHHH-HHHcCcEEEecCCcEEEEecCCCe-EEEEE
Confidence 22 288998886442 21 222223 345799999999999998876553 66676
Q ss_pred EEecc-----------C-C-------------ceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCc
Q 016820 281 VKNLV-----------T-G-------------QVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPG 335 (382)
Q Consensus 281 ~~~~~-----------~-~-------------~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~ 335 (382)
+.... . + .+..++||.|+.|+|..|++.+.. .+
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~----------------------~~ 736 (1028)
T PRK06567 679 FENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE----------------------DK 736 (1028)
T ss_pred EEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc----------------------cc
Confidence 65322 0 1 347899999999999999988731 11
Q ss_pred eEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820 336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQ 374 (382)
Q Consensus 336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~ 374 (382)
+-.+||+-+...++...|+.+|+.++.+|.++|....+.
T Consensus 737 ~s~~~d~~~~f~Gtvv~A~as~k~~~~~i~~~l~~~~~~ 775 (1028)
T PRK06567 737 YSYFGDCNPKYSGSVVKALASSKEGYDAINKKLINNNPS 775 (1028)
T ss_pred cccccCCCCccccHHHHHHHHHHhHHHHHHHHHhhCCCC
Confidence 233455554444588999999999999999999876554
No 83
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.87 E-value=1.4e-21 Score=191.23 Aligned_cols=290 Identities=23% Similarity=0.293 Sum_probs=190.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.-++|.|||+||+||+||-+|.+.|+.|+++| ....+||.+.+ ++|.......+.++-...+.+.||+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vye----r~dr~ggll~y--------gipnmkldk~vv~rrv~ll~~egi~ 1851 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYE----RSDRVGGLLMY--------GIPNMKLDKFVVQRRVDLLEQEGIR 1851 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEE----ecCCcCceeee--------cCCccchhHHHHHHHHHHHHhhCce
Confidence 45899999999999999999999999999999 67789998886 5666566667778777888899999
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCcc--------ccC---CCcceeeeccCCCCCCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDA--------FWN---RGISACAVCDGAAPIFR 204 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~--------~~~---~~~~~~~~~~~~~~~~~ 204 (382)
|+.++ .|.+ . +..+.-.-..|.+|+|+|+ .|+..++||-+. |.. +.+..... +..-....
T Consensus 1852 f~tn~--eigk---~--vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~-d~~~~~~~ 1923 (2142)
T KOG0399|consen 1852 FVTNT--EIGK---H--VSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVL-DGNYISAK 1923 (2142)
T ss_pred EEeec--cccc---c--ccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhcccc-ccceeccC
Confidence 98874 2221 1 2223334578999999999 699999999875 100 11111111 11111345
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCCcc-------------------hHHHHHHhcc-CCC-cEEEc--
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSFRA-------------------SKIMQNRALT-NPK-IDVIW-- 260 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~~~-------------------~~~~~~~~l~-~~g-v~~~~-- 260 (382)
+|+|+|||+|.+|-++...-.++|.+ |.-+.--+.++. .....++..- +.. ..+..
T Consensus 1924 gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~ 2003 (2142)
T KOG0399|consen 1924 GKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKR 2003 (2142)
T ss_pred CCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeee
Confidence 89999999999999999888888854 443433222210 0111111111 100 11111
Q ss_pred ----------Ccee--EEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC-hhhhc-ccccccCCCceeeCC
Q 016820 261 ----------NSVV--LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA-TKFVD-GQLDLHSDGYIITKP 326 (382)
Q Consensus 261 ----------~~~v--~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~-~~~~~-~~~~~~~~g~i~vd~ 326 (382)
+-.. .+++.++.|. .++.. ..++++.+++|+|+++-|+... ....+ .++..++++-+..-.
T Consensus 2004 f~~~~~g~v~gl~~vrvew~k~~~g~----w~~~e-i~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~ 2078 (2142)
T KOG0399|consen 2004 FIGDDNGNVTGLETVRVEWEKDDKGR----WQMKE-INNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPK 2078 (2142)
T ss_pred eeccCCCceeeEEEEEEEEEecCCCc----eEEEE-cCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCC
Confidence 1111 1233444442 12211 1244578999999999999844 34433 456667776665555
Q ss_pred CCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820 327 GTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIG 372 (382)
Q Consensus 327 ~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~ 372 (382)
..+.+.++.+||+|||... -....+|++.|+.+|..+-..+.++.
T Consensus 2079 ~~y~t~v~~vfaagdcrrg-qslvvwai~egrq~a~~vd~~~~~~t 2123 (2142)
T KOG0399|consen 2079 DSYSTDVAKVFAAGDCRRG-QSLVVWAIQEGRQAARQVDELMGGTT 2123 (2142)
T ss_pred ccccccccceeecccccCC-ceEEEEEehhhhHHHHHHHHHhCCcc
Confidence 5789999999999999864 35678999999999999998555544
No 84
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.7e-21 Score=182.16 Aligned_cols=179 Identities=26% Similarity=0.318 Sum_probs=141.4
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecC----------CCcccCCCCCC-----CCCh
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTT----------SDVENFPGFPQ-----GILG 119 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~----------~~~~~~~~~~~-----~~~~ 119 (382)
...+||+|||||++|+++|+.|.+.|.+ ++|+| +...+||.|... .....||.+|. ....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~E----k~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFE----KRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEE----ccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence 3568999999999999999999999999 99999 555667665431 12223333332 1223
Q ss_pred HHHHHHHHHHHHHcCcEEEEe---eEEEE--EecCCcEEEEECCeE---EEcCEEEEccCC--CCcCCCCCCCccccCCC
Q 016820 120 GDLMDRCRNQSLRFGTQIFTE---TVSKV--DFKSRPFKVFTDSKS---VLADTVIVATGA--VAKKLQFPGSDAFWNRG 189 (382)
Q Consensus 120 ~~~~~~~~~~~~~~gi~~~~~---~v~~i--~~~~~~~~v~~~~~~---~~~d~lvlA~G~--~~~~~~~~g~~~~~~~~ 189 (382)
.++.+++..+++++++..... .|..+ +.+.+.|+|.++++. +.+|.||+|||. .|+.|.++|.+.|.+..
T Consensus 82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~ 161 (443)
T COG2072 82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRI 161 (443)
T ss_pred ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceE
Confidence 447888888888887654222 23334 444567988876543 669999999998 69999999999999999
Q ss_pred cceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820 190 ISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240 (382)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~ 240 (382)
+|..++.+.. .+.+|+|+|||+|.+|++++..|.+.+.+||++.|++..
T Consensus 162 ~HS~~~~~~~--~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 162 LHSADWPNPE--DLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred EchhcCCCcc--ccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 9999999987 889999999999999999999999999999999999876
No 85
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.85 E-value=3.1e-21 Score=166.71 Aligned_cols=301 Identities=15% Similarity=0.143 Sum_probs=191.9
Q ss_pred ccccccEEEECCcHHHHHHHHHHHHc-C-CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH
Q 016820 55 QTLKTKVCIIGSGPAAHTAAIYAARA-E-LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR 132 (382)
Q Consensus 55 ~~~~~~vvIIGaG~aGl~~A~~l~~~-g-~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
.+..++|+|||||.+|+.+|..+.+. | -+|.++|+....-.++|-++...... .-+-...-+.-+-.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~-----------~l~~srr~~a~liP 104 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLK-----------SLDSSRRKQASLIP 104 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchh-----------hhhhccCccccccc
Confidence 34678999999999999999999877 3 58999996433333444433321100 00000000000111
Q ss_pred cCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCC----cceeeecc----CCCCCCC
Q 016820 133 FGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRG----ISACAVCD----GAAPIFR 204 (382)
Q Consensus 133 ~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~----~~~~~~~~----~~~~~~~ 204 (382)
.+..++...|.+.+++++.+... ++++|.||++|+|+|..-+...|+|..+..... .++..+.+ .......
T Consensus 105 ~~a~wi~ekv~~f~P~~N~v~t~-gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~ 183 (446)
T KOG3851|consen 105 KGATWIKEKVKEFNPDKNTVVTR-GGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKK 183 (446)
T ss_pred CCcHHHHHHHHhcCCCcCeEEcc-CCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccC
Confidence 23444455677888888765554 567899999999999988888888876522211 01101000 0000112
Q ss_pred CC--------cEEEEcCCchHHHHHHH-HhhcCC--EEEEEEe--CCCCc----chHHHHHHhccCCCcEEEcCceeEEE
Q 016820 205 DK--------PLAVIGGGDSAMEEANF-LTKYGS--KVYIIHR--RDSFR----ASKIMQNRALTNPKIDVIWNSVVLEA 267 (382)
Q Consensus 205 ~~--------~v~VvG~G~~a~e~a~~-l~~~g~--~v~~~~~--~~~~~----~~~~~~~~~l~~~gv~~~~~~~v~~i 267 (382)
+. .+---|+-.-.+-++.. +.++|. ++.+++. -+.+. ..+.+ +++.++++|++.....+.++
T Consensus 184 GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL-~k~~~~rni~vn~krnLiEV 262 (446)
T KOG3851|consen 184 GNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADAL-EKVIQERNITVNYKRNLIEV 262 (446)
T ss_pred CceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHH-HHHHHhcceEeeeccceEEE
Confidence 22 22233444445556544 455553 3444443 33332 23333 46677899999999999999
Q ss_pred EecCCceeeeeEEEEeccC-CceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcC-CCCceEEecccCCc
Q 016820 268 YGEGDKKVLGGLKVKNLVT-GQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHT-SVPGVFAAGDVQDK 345 (382)
Q Consensus 268 ~~~~~g~~~~~v~~~~~~~-~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t-~~~~vya~GD~~~~ 345 (382)
..++.. ..+++... |...+++++++.+.+++++...+..+. -.|..||+.||..+++. .+||||+||||.+.
T Consensus 263 ~~~~~~-----AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~-~adktGfvdVD~~TlQs~kypNVFgiGDc~n~ 336 (446)
T KOG3851|consen 263 RTNDRK-----AVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSD-LADKTGFVDVDQSTLQSKKYPNVFGIGDCMNL 336 (446)
T ss_pred eccchh-----hHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCc-ccCcccceecChhhhccccCCCceeeccccCC
Confidence 888753 34443332 666789999999999998866655544 56889999999977765 69999999999975
Q ss_pred h-hhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820 346 K-YRQAVTAAGTGCMAALEAEHYLQEIGSQ 374 (382)
Q Consensus 346 ~-~~~~~~a~~~g~~aa~~i~~~l~~~~~~ 374 (382)
+ .+++.....|....-+|+.+.++++.+-
T Consensus 337 PnsKTaAAvaaq~~vv~~nl~~~m~g~~pt 366 (446)
T KOG3851|consen 337 PNSKTAAAVAAQSPVVDKNLTQVMQGKRPT 366 (446)
T ss_pred CchhhHHHHHhcCchhhhhHHHHhcCCCcc
Confidence 4 6777788899999999999999987643
No 86
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=7.6e-19 Score=157.69 Aligned_cols=312 Identities=18% Similarity=0.203 Sum_probs=207.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcceecCCCcccC---------CC-------------
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQLTTTSDVENF---------PG------------- 112 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~~~~~~~~~~~---------~~------------- 112 (382)
+...|++.||-||+-|++|..|...+ .++..+|+.+...|.+|..+..+..-..| |-
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 35689999999999999999999985 88999999888888888765543211111 00
Q ss_pred ----C----CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEE---EecCCc--EEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820 113 ----F----PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKV---DFKSRP--FKVFTDSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 113 ----~----~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i---~~~~~~--~~v~~~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
+ -..+.+.|+.+|+++.+..+ -.++.+ +|++| +.+... +.+..++..++++.||+++|.+|+.|+
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~ 161 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPP 161 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCCh
Confidence 0 02357789999999999888 455566 68855 333221 233334557999999999999999984
Q ss_pred C-CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhc----CCEEEEEEeCCCCcc-----------
Q 016820 179 F-PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKY----GSKVYIIHRRDSFRA----------- 242 (382)
Q Consensus 179 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~----g~~v~~~~~~~~~~~----------- 242 (382)
. ..... .+..|..++.....+....++|.|||+|.+|.|+...|... ..++.|+.|+..+.+
T Consensus 162 ~f~~l~~--~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F 239 (436)
T COG3486 162 CFRSLIG--ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYF 239 (436)
T ss_pred HHhCcCc--cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhc
Confidence 2 11111 14455555554443333445599999999999999888743 346899999988711
Q ss_pred --------------------------------------hHHHHHHhc--cCCCcEEEcCceeEEEEecCCceeeeeEEEE
Q 016820 243 --------------------------------------SKIMQNRAL--TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK 282 (382)
Q Consensus 243 --------------------------------------~~~~~~~~l--~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~ 282 (382)
.+.+.++-+ .+.++.++..+.+..+++.++|+ ..+.+.
T Consensus 240 ~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~--~~l~~~ 317 (436)
T COG3486 240 SPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR--YRLTLR 317 (436)
T ss_pred CchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce--EEEEEe
Confidence 011111112 14678899999999999999874 345555
Q ss_pred eccCCceEEEecCeEEEeeCCCCChh-hhc---ccccccCCCceeeCCCCCcCC----CCceEEecccCCchhhHHHHHH
Q 016820 283 NLVTGQVSDLKVSGLFFAIGHEPATK-FVD---GQLDLHSDGYIITKPGTTHTS----VPGVFAAGDVQDKKYRQAVTAA 354 (382)
Q Consensus 283 ~~~~~~~~~~~~D~vi~~~G~~p~~~-~~~---~~~~~~~~g~i~vd~~~~~t~----~~~vya~GD~~~~~~~~~~~a~ 354 (382)
....++..+++.|.||++||++...+ ++. ..+.++++|...|++++..-. .-.||+-|-+... .+.+..-.
T Consensus 318 ~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht-HGig~pdL 396 (436)
T COG3486 318 HHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT-HGIGAPDL 396 (436)
T ss_pred eccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc-cccCCccc
Confidence 55567778899999999999995443 555 356778899999998544322 2369999987642 11111122
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 016820 355 GTGCMAALEAEHYLQEIGS 373 (382)
Q Consensus 355 ~~g~~aa~~i~~~l~~~~~ 373 (382)
.-+.+=+..|.+.|.+..+
T Consensus 397 sl~a~Raa~I~~~L~g~~~ 415 (436)
T COG3486 397 SLGAWRAAVILNSLLGREK 415 (436)
T ss_pred hHHHHHHHHHHHHHhCcCC
Confidence 2222333445566655443
No 87
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.84 E-value=1.2e-18 Score=163.69 Aligned_cols=289 Identities=17% Similarity=0.148 Sum_probs=184.1
Q ss_pred ccccEEEECCcHHHHHHHHHHH-HcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAA-RAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~-~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
.+++|+||||||||+++|.+|. +.|++|+|+| +...+||.+.+. -.|++.....+.+.+...+...++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfE----k~p~pgGLvR~G-------VaPdh~~~k~v~~~f~~~~~~~~v 106 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFE----KLPNPYGLIRYG-------VAPDHIHVKNTYKTFDPVFLSPNY 106 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEe----cCCCCccEEEEe-------CCCCCccHHHHHHHHHHHHhhCCe
Confidence 4578999999999999999765 6699999999 666778877642 112344556777777777777788
Q ss_pred EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCC----------CCc---------c-----ccCCCcc
Q 016820 136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFP----------GSD---------A-----FWNRGIS 191 (382)
Q Consensus 136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~----------g~~---------~-----~~~~~~~ 191 (382)
+++.+.-...+ +..+.-.-.||.||+|+|+.+..++++ |.+ . .|.+..+
T Consensus 107 ~f~gnv~VG~D-------vt~eeL~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p 179 (506)
T PTZ00188 107 RFFGNVHVGVD-------LKMEELRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMY 179 (506)
T ss_pred EEEeeeEecCc-------cCHHHHHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCC
Confidence 88743211111 111122247999999999986433311 321 1 2333322
Q ss_pred eee---eccCCCC-CCCCCcEEEEcCCchHHHHHHHHhhc--------------------C-CEEEEEEeCCCCcc----
Q 016820 192 ACA---VCDGAAP-IFRDKPLAVIGGGDSAMEEANFLTKY--------------------G-SKVYIIHRRDSFRA---- 242 (382)
Q Consensus 192 ~~~---~~~~~~~-~~~~~~v~VvG~G~~a~e~a~~l~~~--------------------g-~~v~~~~~~~~~~~---- 242 (382)
.+. ....++. ....++++|||+|++|+++|..|... + .+|+++.|+.....
T Consensus 180 ~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~ 259 (506)
T PTZ00188 180 NDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTN 259 (506)
T ss_pred CccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCH
Confidence 111 1111110 11457899999999999999976422 1 47899988875500
Q ss_pred -----------------hHH--------------------------HHHHhcc----------CCCcEEEcCceeEEEEe
Q 016820 243 -----------------SKI--------------------------MQNRALT----------NPKIDVIWNSVVLEAYG 269 (382)
Q Consensus 243 -----------------~~~--------------------------~~~~~l~----------~~gv~~~~~~~v~~i~~ 269 (382)
... ++++..+ .+.+.+++...+.+|.+
T Consensus 260 kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~ 339 (506)
T PTZ00188 260 AELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRP 339 (506)
T ss_pred HHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEEC
Confidence 000 1111111 13366777788888886
Q ss_pred cCCceeeeeEEEEec--------cCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecc
Q 016820 270 EGDKKVLGGLKVKNL--------VTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGD 341 (382)
Q Consensus 270 ~~~g~~~~~v~~~~~--------~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD 341 (382)
++ | .++++++... .+++.+.+++|+|+.++|++...- . ++.+| .. +......-....|++|++|.
T Consensus 340 ~~-~-~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~--~-g~pFd-~~-~~n~~grv~~~~~g~Y~~GW 412 (506)
T PTZ00188 340 ID-G-AMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF--A-ENLYN-QS-VQMFKEDIGQHKFAIFKAGW 412 (506)
T ss_pred CC-C-cEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC--C-CCCcc-cc-CCCCCCcccCCCCCcEEeee
Confidence 32 3 3777887732 235557899999999999997542 2 45666 32 33322111113699999999
Q ss_pred cCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 342 VQDKKYRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 342 ~~~~~~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
+...+.+.+...+..+..++..|.+++..
T Consensus 413 iKrGP~GvIgtn~~da~~t~~~v~~d~~~ 441 (506)
T PTZ00188 413 FDKGPKGNIASQILNSKNSTHLVLNFLQK 441 (506)
T ss_pred cCcCCCceeccCcccHHHHHHHHHHHHhh
Confidence 99877778888888999999999999865
No 88
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.82 E-value=5.4e-19 Score=156.46 Aligned_cols=286 Identities=19% Similarity=0.257 Sum_probs=187.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG 134 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 134 (382)
..++|+|||+||||+.+|..|.+. +++|.++| +...+.|... |.-.|++...+.+...+.+.+++..
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~E----k~PvPFGLvR-------yGVAPDHpEvKnvintFt~~aE~~r 87 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFE----KLPVPFGLVR-------YGVAPDHPEVKNVINTFTKTAEHER 87 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeee----cCCcccceee-------eccCCCCcchhhHHHHHHHHhhccc
Confidence 345899999999999999999884 69999999 4445555544 3344666677788888888888878
Q ss_pred cEEEEe-eE-EEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCcc----------ccCCCcceeeeccCCCC
Q 016820 135 TQIFTE-TV-SKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDA----------FWNRGISACAVCDGAAP 201 (382)
Q Consensus 135 i~~~~~-~v-~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~----------~~~~~~~~~~~~~~~~~ 201 (382)
..++.+ ++ .++.. ..-+-.||.||+|.|+ .++.++|||.+. -|++.....+..+.
T Consensus 88 fsf~gNv~vG~dvsl---------~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~--- 155 (468)
T KOG1800|consen 88 FSFFGNVKVGRDVSL---------KELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEP--- 155 (468)
T ss_pred eEEEecceecccccH---------HHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCc---
Confidence 877766 33 22221 1223479999999999 578889999873 33343333332222
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHhhcC----------------------CEEEEEEeCCCCcch----------------
Q 016820 202 IFRDKPLAVIGGGDSAMEEANFLTKYG----------------------SKVYIIHRRDSFRAS---------------- 243 (382)
Q Consensus 202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g----------------------~~v~~~~~~~~~~~~---------------- 243 (382)
.....+++|||.|++++++|..|...- ++|+++.|+..+..+
T Consensus 156 dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~ 235 (468)
T KOG1800|consen 156 DLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGAR 235 (468)
T ss_pred ccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcc
Confidence 344889999999999999998876421 478999988866110
Q ss_pred ------------------------HHH----HHHhcc--------CCC---cEEEcCceeEEEEecCCceeeeeEEEE--
Q 016820 244 ------------------------KIM----QNRALT--------NPK---IDVIWNSVVLEAYGEGDKKVLGGLKVK-- 282 (382)
Q Consensus 244 ------------------------~~~----~~~~l~--------~~g---v~~~~~~~v~~i~~~~~g~~~~~v~~~-- 282 (382)
+.+ .+.+-+ ..+ ..+.+.....+|.++.+| +.++.+.
T Consensus 236 ~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~--v~~~~~~~t 313 (468)
T KOG1800|consen 236 PRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG--VSGVRFQVT 313 (468)
T ss_pred cccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc--ccceEEEee
Confidence 001 000000 011 122223334455555443 2223332
Q ss_pred ------eccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCc---CCCCceEEecccCCchhhHHHHH
Q 016820 283 ------NLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTH---TSVPGVFAAGDVQDKKYRQAVTA 353 (382)
Q Consensus 283 ------~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~---t~~~~vya~GD~~~~~~~~~~~a 353 (382)
...+++.++++|++++.+.|++..+-. .++.+|....+.-|.+.+. --.|+||++|.|...+.+.+..+
T Consensus 314 ~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~--~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~GvIatt 391 (468)
T KOG1800|consen 314 ILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVD--SGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGVIATT 391 (468)
T ss_pred eehhhcccccCceEeeccceeEeeeeecccccC--CCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCcceeeeh
Confidence 223456688999999999999864321 1444444333333321111 03699999999998778889999
Q ss_pred HhhHHHHHHHHHHHHH
Q 016820 354 AGTGCMAALEAEHYLQ 369 (382)
Q Consensus 354 ~~~g~~aa~~i~~~l~ 369 (382)
+++|..+|..|.+++.
T Consensus 392 m~dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 392 MQDAFEVADTIVQDLK 407 (468)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999999998
No 89
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.82 E-value=4.3e-18 Score=155.09 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=135.8
Q ss_pred EEEcCEEEEccCCCCcCCCCC---CCccccCCCcce---e------------eeccCCCCCCCCCcEEEE---cCCc---
Q 016820 160 SVLADTVIVATGAVAKKLQFP---GSDAFWNRGISA---C------------AVCDGAAPIFRDKPLAVI---GGGD--- 215 (382)
Q Consensus 160 ~~~~d~lvlA~G~~~~~~~~~---g~~~~~~~~~~~---~------------~~~~~~~~~~~~~~v~Vv---G~G~--- 215 (382)
+++...+|+|||-.+....-. |...+ .+.+.. . .+.... ...+|+|++| |+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~-~nVIT~lElErml~~~GPT~GkvlrpSd--g~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKY-PNVITNLELERMLNPNGPTGGKVLRPSD--GKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCC-cchhhHHHHHHHhccCCCCCceEEecCC--CCCCceEEEEEEecCcCccc
Confidence 488999999999976554221 11110 000000 0 111111 3457888885 5432
Q ss_pred -----h------HHHHHHHHhhc--CCEEEEEEeCCCC-c-chHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820 216 -----S------AMEEANFLTKY--GSKVYIIHRRDSF-R-ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK 280 (382)
Q Consensus 216 -----~------a~e~a~~l~~~--g~~v~~~~~~~~~-~-~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~ 280 (382)
+ ++..|.++.++ ..+|++++..-+- . ....+..+..++.||+++.+ ++.+|...++++.+ |+
T Consensus 375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l~--V~ 451 (622)
T COG1148 375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLI--VR 451 (622)
T ss_pred CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCeeE--EE
Confidence 1 33334444443 2567777654432 2 34455556666889999865 68888888776533 66
Q ss_pred EEeccCCceEEEecCeEEEeeCCCCChhhhc----ccccccCCCceeeCCCCC---cCCCCceEEecccCCchhhHHHHH
Q 016820 281 VKNLVTGQVSDLKVSGLFFAIGHEPATKFVD----GQLDLHSDGYIITKPGTT---HTSVPGVFAAGDVQDKKYRQAVTA 353 (382)
Q Consensus 281 ~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~----~~~~~~~~g~i~vd~~~~---~t~~~~vya~GD~~~~~~~~~~~a 353 (382)
.++...+...++++|+|++++|+.|....-. .+|+.+++||+....-.+ .++.++||.+|-+.+ |+.+..+
T Consensus 452 ~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg--PkdI~~s 529 (622)
T COG1148 452 VEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG--PKDIADS 529 (622)
T ss_pred EEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC--CccHHHH
Confidence 6676667778899999999999998654322 588999999987753233 457899999999986 6899999
Q ss_pred HhhHHHHHHHHHHHHHHcc
Q 016820 354 AGTGCMAALEAEHYLQEIG 372 (382)
Q Consensus 354 ~~~g~~aa~~i~~~l~~~~ 372 (382)
+.||..||..+++.+....
T Consensus 530 iaqa~aAA~kA~~~l~~g~ 548 (622)
T COG1148 530 IAQAKAAAAKAAQLLGRGE 548 (622)
T ss_pred HHHhHHHHHHHHHHhhcCc
Confidence 9999999999999887543
No 90
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.82 E-value=4.3e-20 Score=164.86 Aligned_cols=297 Identities=19% Similarity=0.175 Sum_probs=191.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCC---CCCCcceecCCCcc--------cCCCCC--CCCChHH
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMAND---IAPGGQLTTTSDVE--------NFPGFP--QGILGGD 121 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~---~~~gg~~~~~~~~~--------~~~~~~--~~~~~~~ 121 (382)
.....+|||+|.+..+++...+.. +.+|.+|...+... ......+....+.. .|.+-. -+...+.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 345689999999998888777665 67788875211110 01111111110000 000000 0011111
Q ss_pred HHHHHHH--HHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc--c-----cCCCcc
Q 016820 122 LMDRCRN--QSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA--F-----WNRGIS 191 (382)
Q Consensus 122 ~~~~~~~--~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~--~-----~~~~~~ 191 (382)
+.-.-++ .+..-|+.+..+ .|..|+.+++.+.+. ++.+|.||.++||||.+|+...+..... . ..+...
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~Ln-DG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~ 335 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILN-DGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPA 335 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEec-CCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecch
Confidence 1111111 112337889999 799999988876665 6778999999999999998775432221 1 111112
Q ss_pred eeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhc----CCEEEEEEeCCCCc-------chHHHHHHhccCCCcEEEc
Q 016820 192 ACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKY----GSKVYIIHRRDSFR-------ASKIMQNRALTNPKIDVIW 260 (382)
Q Consensus 192 ~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~----g~~v~~~~~~~~~~-------~~~~~~~~~l~~~gv~~~~ 260 (382)
+....... ....++|.|||+|..|.|+++.|.+. |.+|+.+....... .+++.. +.+++.||.++.
T Consensus 336 DF~rlek~--~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~-ekir~~GV~V~p 412 (659)
T KOG1346|consen 336 DFKRLEKG--LAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTI-EKIRKGGVDVRP 412 (659)
T ss_pred HHHHHHHh--hhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHH-HHHHhcCceecc
Confidence 22222222 23358999999999999999999864 57887766544321 133333 457789999999
Q ss_pred CceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCC-CceeeCCCCCcCCCCceEE
Q 016820 261 NSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSD-GYIITKPGTTHTSVPGVFA 338 (382)
Q Consensus 261 ~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~-g~i~vd~~~~~t~~~~vya 338 (382)
+..|..+.....+ +.++. .++.++..|+|+.|+|..||+++.. .++.+|++ |...||. .++ ...|||+
T Consensus 413 na~v~sv~~~~~n-----l~lkL---~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvna-eL~-ar~Nvwv 482 (659)
T KOG1346|consen 413 NAKVESVRKCCKN-----LVLKL---SDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNA-ELK-ARENVWV 482 (659)
T ss_pred chhhhhhhhhccc-----eEEEe---cCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeh-eee-cccceee
Confidence 9999998887654 66665 4458899999999999999999987 67888764 7888988 343 3589999
Q ss_pred ecccCCc--------hhhHHHHHHhhHHHHHHHHHHH
Q 016820 339 AGDVQDK--------KYRQAVTAAGTGCMAALEAEHY 367 (382)
Q Consensus 339 ~GD~~~~--------~~~~~~~a~~~g~~aa~~i~~~ 367 (382)
+||++.. .......|+-.|++|++||.-.
T Consensus 483 AGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 483 AGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGA 519 (659)
T ss_pred ecchhhhhcccccceeccccccceeeceecccccccc
Confidence 9998852 1234456888999999998653
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.80 E-value=1.4e-20 Score=161.99 Aligned_cols=182 Identities=26% Similarity=0.385 Sum_probs=119.4
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHH--H--HHHHHHHHcCc
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLM--D--RCRNQSLRFGT 135 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~gi 135 (382)
||+|||||+||+++|.+|++.+.+++|+|+.. ..+.. ..................+. + .+.+.+...++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 73 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP----GTPYN---SGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGV 73 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS----HHHHH---HSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc----ccccc---cccccccccccccccccccccccccccccccccceE
Confidence 69999999999999999999999999998410 00000 00000000000000001111 1 33334466799
Q ss_pred EEEEe-eEEEEEecCCcE-----EE---EE-CCeEEEcCEEEEccCCCCcCCCCCCCcc-ccCCCcceeeeccCCCCCCC
Q 016820 136 QIFTE-TVSKVDFKSRPF-----KV---FT-DSKSVLADTVIVATGAVAKKLQFPGSDA-FWNRGISACAVCDGAAPIFR 204 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~~~~-----~v---~~-~~~~~~~d~lvlA~G~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 204 (382)
+++.+ ++.+++...+.+ .+ .. ++.++.||+||+|||+.|+.|.+||.+. ...+....+...... ...
T Consensus 74 ~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~--~~~ 151 (201)
T PF07992_consen 74 EIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLEL--LES 151 (201)
T ss_dssp EEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTH--SST
T ss_pred EEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccc--ccc
Confidence 99555 799999887742 22 11 3456999999999999999999999732 333555555555554 333
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL 284 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~ 284 (382)
.++++|||
T Consensus 152 ~~~v~VvG------------------------------------------------------------------------ 159 (201)
T PF07992_consen 152 PKRVAVVG------------------------------------------------------------------------ 159 (201)
T ss_dssp TSEEEEES------------------------------------------------------------------------
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 55999999
Q ss_pred cCCceEEEecCeEEEeeCCCCChhhh--cccccccCCCceeeCCCCCcCCCCceEEecccCCc
Q 016820 285 VTGQVSDLKVSGLFFAIGHEPATKFV--DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 345 (382)
Q Consensus 285 ~~~~~~~~~~D~vi~~~G~~p~~~~~--~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~ 345 (382)
...+ ..++.++++|++.||+ +++|+.||||++|||++.
T Consensus 160 ----------------------~~~l~~~~~~~~~~~g~i~vd~-~~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 160 ----------------------TEFLAEKLGVELDENGFIKVDE-NLQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp ----------------------TTTSTHHTTSTBTTTSSBEEBT-TSBBSSTTEEE-GGGBEE
T ss_pred ----------------------cccccccccccccccccccccc-cccccccccccccccccc
Confidence 3333 2467788999999999 789999999999999864
No 92
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.70 E-value=5.6e-17 Score=136.81 Aligned_cols=254 Identities=19% Similarity=0.178 Sum_probs=143.8
Q ss_pred cEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHH------H
Q 016820 60 KVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQS------L 131 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 131 (382)
+.+|||||.||++||.+|+.+ ..+++|+... ..+ .... ....+.+|+.++- .
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitas----s~v-------ksvt---------n~~~i~~ylekfdv~eq~~~ 60 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITAS----SFV-------KSVT---------NYQKIGQYLEKFDVKEQNCH 60 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEecc----HHH-------HHHh---------hHHHHHHHHHhcCccccchh
Confidence 368999999999999999998 5788888721 000 0000 1112222222211 1
Q ss_pred HcCcEEE--EeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCC-Ccc-ccCCCcceeeeccCCCCCCCCCc
Q 016820 132 RFGTQIF--TETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPG-SDA-FWNRGISACAVCDGAAPIFRDKP 207 (382)
Q Consensus 132 ~~gi~~~--~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 207 (382)
++|-++. .+.|..++..+..++.+ ++..+.|++|++|+|.+|..- ..| ... ...+.....+..... ....|.
T Consensus 61 elg~~f~~~~~~v~~~~s~ehci~t~-~g~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~k--l~kaK~ 136 (334)
T KOG2755|consen 61 ELGPDFRRFLNDVVTWDSSEHCIHTQ-NGEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCK--LVKAKI 136 (334)
T ss_pred hhcccHHHHHHhhhhhccccceEEec-CCceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHH--Hhhcce
Confidence 1122211 11133344333333332 567799999999999999653 333 222 111222333333333 556899
Q ss_pred EEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhc------------------------------
Q 016820 208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRAL------------------------------ 251 (382)
Q Consensus 208 v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l------------------------------ 251 (382)
|.|+|.|.+++|++.++.- .+|+|....+.+.. ..+.....+
T Consensus 137 VlilgnGgia~El~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~ 214 (334)
T KOG2755|consen 137 VLILGNGGIAMELTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGP 214 (334)
T ss_pred EEEEecCchhHHHHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCccc
Confidence 9999999999999999874 46777776665410 011100000
Q ss_pred ----------------c--CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-c
Q 016820 252 ----------------T--NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-G 312 (382)
Q Consensus 252 ----------------~--~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~ 312 (382)
+ ++.+++..+.-+....+.+. ..++-.+...+.-..+.||.+++++|..|+..++- .
T Consensus 215 algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~----~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~ 290 (334)
T KOG2755|consen 215 ALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDN----LSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNK 290 (334)
T ss_pred ccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhh----cccccccccccccceeeeeEEEeccccCcCceEEecC
Confidence 0 00001000111111111111 11222221222224678999999999999999543 3
Q ss_pred cccccCCCceeeCCCCCcCCCCceEEecccCC
Q 016820 313 QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD 344 (382)
Q Consensus 313 ~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~ 344 (382)
.++..++|.+.||+ .++|+.|++||+||.+.
T Consensus 291 ~lq~~edggikvdd-~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 291 MLQITEDGGIKVDD-AMETSLPDVFAAGDVCT 321 (334)
T ss_pred hhhhccccCeeehh-hccccccceeeecceec
Confidence 56778899999998 89999999999999875
No 93
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.66 E-value=1.2e-14 Score=131.27 Aligned_cols=118 Identities=31% Similarity=0.391 Sum_probs=89.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC----CCCcceecCCCc------ccCCC--------------
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI----APGGQLTTTSDV------ENFPG-------------- 112 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~----~~gg~~~~~~~~------~~~~~-------------- 112 (382)
..+||+|||||+||++||..+++.|++|+|||+...-+. .-||.|..+... .++|+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 458999999999999999999999999999995321111 113333332211 12221
Q ss_pred ----------------------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe-EEEcCEEEE
Q 016820 113 ----------------------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK-SVLADTVIV 168 (382)
Q Consensus 113 ----------------------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~-~~~~d~lvl 168 (382)
||.......+.+.+...+++.|++++.+ +|.+++.++..+.+.++++ ++++|.+|+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence 3333456788899999999999999999 7999999988899998887 699999999
Q ss_pred ccCCCC
Q 016820 169 ATGAVA 174 (382)
Q Consensus 169 A~G~~~ 174 (382)
|+|..+
T Consensus 162 AtGG~S 167 (408)
T COG2081 162 ATGGKS 167 (408)
T ss_pred ecCCcC
Confidence 999643
No 94
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.62 E-value=1.1e-14 Score=137.27 Aligned_cols=155 Identities=17% Similarity=0.105 Sum_probs=103.4
Q ss_pred EEEEcCCchHHHHH-HHHh----hcCCEEEEEEeCCCCcch----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820 208 LAVIGGGDSAMEEA-NFLT----KYGSKVYIIHRRDSFRAS----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG 278 (382)
Q Consensus 208 v~VvG~G~~a~e~a-~~l~----~~g~~v~~~~~~~~~~~~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~ 278 (382)
=.|++.+.+|+|.+ ..+. ++|.+|+++...+..... ..+ .+.+++.|++++.++.+.+++..+++ +..
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL-~~~l~~~Gv~I~~g~~V~~v~~~~~~--V~~ 294 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNAL-RRAFERLGGRIMPGDEVLGAEFEGGR--VTA 294 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHH-HHHHHhCCCEEEeCCEEEEEEEeCCE--EEE
Confidence 37788999999998 5554 469999999887766432 333 35577789999999999999877643 222
Q ss_pred EEEEeccCCceEEEecCeEEEeeCCCCChhhhc---------ccccc--cC-----------------CCceeeCCC---
Q 016820 279 LKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---------GQLDL--HS-----------------DGYIITKPG--- 327 (382)
Q Consensus 279 v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---------~~~~~--~~-----------------~g~i~vd~~--- 327 (382)
+. . ..+....+.+|.+++|+|..+...+.. -++.+ .+ .-.+.+|+.
T Consensus 295 v~-~--~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p 371 (422)
T PRK05329 295 VW-T--RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRP 371 (422)
T ss_pred EE-e--eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCc
Confidence 22 1 124446799999999999876543311 01111 00 112455553
Q ss_pred ---CCcCCCCceEEecccCCchhh-----HHHHHHhhHHHHHHHHHHHH
Q 016820 328 ---TTHTSVPGVFAAGDVQDKKYR-----QAVTAAGTGCMAALEAEHYL 368 (382)
Q Consensus 328 ---~~~t~~~~vya~GD~~~~~~~-----~~~~a~~~g~~aa~~i~~~l 368 (382)
..++..+||||||++.+.+.. -...|+..|..||++|++..
T Consensus 372 ~~~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 372 LDSQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred ccCCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 223458999999999864311 23578899999999998654
No 95
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.49 E-value=2.3e-11 Score=112.86 Aligned_cols=174 Identities=22% Similarity=0.275 Sum_probs=106.1
Q ss_pred ccEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCc------------c-cCCC----------
Q 016820 59 TKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDV------------E-NFPG---------- 112 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~------------~-~~~~---------- 112 (382)
++|+|||+|++|+.+|.+|.+. ...|.|+|+ ....|.-+.+.... . ..|.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~----~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~ 77 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEP----RPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQ 77 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecc----ccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHH
Confidence 6899999999999999999988 233999995 33333322221111 0 0011
Q ss_pred ------------------C-CCCCChHHHHHHHHHHHHHcC---cEEEEeeEEEEEec--CCcEEEEEC-CeEEEcCEEE
Q 016820 113 ------------------F-PQGILGGDLMDRCRNQSLRFG---TQIFTETVSKVDFK--SRPFKVFTD-SKSVLADTVI 167 (382)
Q Consensus 113 ------------------~-~~~~~~~~~~~~~~~~~~~~g---i~~~~~~v~~i~~~--~~~~~v~~~-~~~~~~d~lv 167 (382)
| |..+.++.+.+++..++++.. +.++..+++++..+ ...+.+.+. +....+|-+|
T Consensus 78 ~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~V 157 (474)
T COG4529 78 KQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIV 157 (474)
T ss_pred hcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEE
Confidence 0 112233444444555555444 67777777777766 445555554 4557899999
Q ss_pred EccCCCCcCCCC-----CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCC--EEEEEEeCCCC
Q 016820 168 VATGAVAKKLQF-----PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGS--KVYIIHRRDSF 240 (382)
Q Consensus 168 lA~G~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~--~v~~~~~~~~~ 240 (382)
+|||..+-.++. +|...+. ...+....++. .....+|+|+|+|.+.++....|.+.|+ +||.+.|+...
T Consensus 158 latgh~~~~~~~~~~~~~~~~~~i-a~~~~~~~ld~---v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrGl~ 233 (474)
T COG4529 158 LATGHSAPPADPAARDLKGSPRLI-ADPYPANALDG---VDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRGLV 233 (474)
T ss_pred EeccCCCCCcchhhhccCCCccee-ccccCCccccc---ccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccccc
Confidence 999985433322 2221111 11111122222 3345679999999999999999999875 58999988743
No 96
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.39 E-value=7.4e-12 Score=118.81 Aligned_cols=136 Identities=20% Similarity=0.128 Sum_probs=102.1
Q ss_pred cceeccccccccccccccccccc--CCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCC
Q 016820 20 KARTFFGIVTTSSAAAAASFSAT--TAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAP 97 (382)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~ 97 (382)
.+..++ ++||+++..++.+... ....++...... ..+.+++|||||+.|+++|..++++|.+|+|+|+.
T Consensus 135 ~a~~ii-IATGS~p~~~~~~~~~~~~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~------- 205 (454)
T COG1249 135 TADNII-IATGSRPRIPPGPGIDGARILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERG------- 205 (454)
T ss_pred EeCEEE-EcCCCCCcCCCCCCCCCCeEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC-------
Confidence 333333 6699998877755544 334444434444 67899999999999999999999999999999941
Q ss_pred CcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-e--EEEcCEEEEccCCC
Q 016820 98 GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-K--SVLADTVIVATGAV 173 (382)
Q Consensus 98 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-~--~~~~d~lvlA~G~~ 173 (382)
........+++.+.+.+.+++.+++++.+ .+..++..++.+.+..++ . ++.+|++++|+|++
T Consensus 206 --------------~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 206 --------------DRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred --------------CCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence 11122356899999999999988999999 688887766555555433 2 68899999999999
Q ss_pred CcCCC
Q 016820 174 AKKLQ 178 (382)
Q Consensus 174 ~~~~~ 178 (382)
|+...
T Consensus 272 Pn~~~ 276 (454)
T COG1249 272 PNTDG 276 (454)
T ss_pred cCCCC
Confidence 98874
No 97
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.39 E-value=2.4e-12 Score=121.12 Aligned_cols=112 Identities=31% Similarity=0.397 Sum_probs=72.3
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCC--------cceecCC---CcccC----CC-----------
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPG--------GQLTTTS---DVENF----PG----------- 112 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g--------g~~~~~~---~~~~~----~~----------- 112 (382)
|||+|||||+||+.||+.|++.|++|+|+|++ ..+| |++..+. ....| +.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~----~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~ 76 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERN----KRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR 76 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS----SSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC----cccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhc
Confidence 69999999999999999999999999999953 3332 3333222 00000 00
Q ss_pred -------------------------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-EEEEE-CCeEEEcC
Q 016820 113 -------------------------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-FKVFT-DSKSVLAD 164 (382)
Q Consensus 113 -------------------------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d 164 (382)
+|......++.+.+...+++.|++++.+ +|.+|..+++. +.+.+ ++..+.+|
T Consensus 77 f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~ 156 (409)
T PF03486_consen 77 FSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEAD 156 (409)
T ss_dssp S-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEES
T ss_pred CCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCC
Confidence 2223356788888999999999999999 79999987766 88998 78889999
Q ss_pred EEEEccCCCC
Q 016820 165 TVIVATGAVA 174 (382)
Q Consensus 165 ~lvlA~G~~~ 174 (382)
.||+|+|..+
T Consensus 157 ~vILAtGG~S 166 (409)
T PF03486_consen 157 AVILATGGKS 166 (409)
T ss_dssp EEEE----SS
T ss_pred EEEEecCCCC
Confidence 9999999865
No 98
>PRK09897 hypothetical protein; Provisional
Probab=99.34 E-value=2.1e-10 Score=111.44 Aligned_cols=172 Identities=15% Similarity=0.219 Sum_probs=103.8
Q ss_pred ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCC-C-----ccc---------------C-----
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTS-D-----VEN---------------F----- 110 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~-~-----~~~---------------~----- 110 (382)
++|+|||||++|+++|..|.+.+ .+|+|+|+. ..+|..+.+.. . ..+ |
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~----~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~ 77 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA----DEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQE 77 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC----CCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhh
Confidence 58999999999999999998874 589999963 22231111000 0 000 0
Q ss_pred -----------------CCCCCCCChHHHHHHHHHH---HHHcC--cEEEEe-eEEEEEecCCcEEEEECC--eEEEcCE
Q 016820 111 -----------------PGFPQGILGGDLMDRCRNQ---SLRFG--TQIFTE-TVSKVDFKSRPFKVFTDS--KSVLADT 165 (382)
Q Consensus 111 -----------------~~~~~~~~~~~~~~~~~~~---~~~~g--i~~~~~-~v~~i~~~~~~~~v~~~~--~~~~~d~ 165 (382)
..+|....+..+.+.+... +...| +.++.. +|++++..++.+.+.+++ ..+.+|+
T Consensus 78 ~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~ 157 (534)
T PRK09897 78 DSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDL 157 (534)
T ss_pred HHHHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCE
Confidence 0111222333333333333 33445 666666 899999888888887643 5689999
Q ss_pred EEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcC-----------------
Q 016820 166 VIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG----------------- 228 (382)
Q Consensus 166 lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g----------------- 228 (382)
||+|+|..+..+ .++...+... .+... ... ...+.+|+|+|.|.++++.+..|...+
T Consensus 158 VVLAtGh~~p~~-~~~~~~yi~~-pw~~~-~~~---~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~ 231 (534)
T PRK09897 158 AVIATGHVWPDE-EEATRTYFPS-PWSGL-MEA---KVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDN 231 (534)
T ss_pred EEECCCCCCCCC-ChhhccccCC-CCcch-hhc---CCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecC
Confidence 999999843111 1222212111 11111 111 223689999999999999998887542
Q ss_pred ----CEEEEEEeCCCC
Q 016820 229 ----SKVYIIHRRDSF 240 (382)
Q Consensus 229 ----~~v~~~~~~~~~ 240 (382)
.+|+.+.|+..+
T Consensus 232 sg~~~~I~a~SRrGl~ 247 (534)
T PRK09897 232 ASEKLNITLMSRTGIL 247 (534)
T ss_pred CCCCceEEEEeCCCCC
Confidence 368888877764
No 99
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.24 E-value=3.7e-09 Score=102.91 Aligned_cols=120 Identities=24% Similarity=0.258 Sum_probs=77.9
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC------CCCCCCcceec--CCCccc---------------C-----
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA------NDIAPGGQLTT--TSDVEN---------------F----- 110 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~------~~~~~gg~~~~--~~~~~~---------------~----- 110 (382)
+||+|||||++|+++|..+++.|.+|+|+|+... .....||.... ...... |
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 5899999999999999999999999999996311 11111211000 000000 0
Q ss_pred ---CCC--C-CCCChHHHHHHHHHHHHHc-CcEEEEeeEEEEEec-CC-cEEEEEC-CeEEEcCEEEEccCCCCcCCC
Q 016820 111 ---PGF--P-QGILGGDLMDRCRNQSLRF-GTQIFTETVSKVDFK-SR-PFKVFTD-SKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 111 ---~~~--~-~~~~~~~~~~~~~~~~~~~-gi~~~~~~v~~i~~~-~~-~~~v~~~-~~~~~~d~lvlA~G~~~~~~~ 178 (382)
|.. + ..++...+...+++.+++. ++.++.++++++..+ ++ .+.|.+. +..+.++.||+|||...+-..
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~i 158 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRGKI 158 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccCCCE
Confidence 100 0 1345667777888888777 789988888887544 33 3345554 446999999999999765443
No 100
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.19 E-value=2.7e-10 Score=108.06 Aligned_cols=118 Identities=27% Similarity=0.315 Sum_probs=82.6
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec------------------------CCCc---ccCC
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT------------------------TSDV---ENFP 111 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~------------------------~~~~---~~~~ 111 (382)
+||+||||||||+++|+.|++.|++|+|+|+.......+|+.+.. +... ...+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 589999999999999999999999999999752222223332110 0000 0011
Q ss_pred C---CCCCCChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEEC---------CeEEEcCEEEEccCCCCcC
Q 016820 112 G---FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD---------SKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 112 ~---~~~~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~---------~~~~~~d~lvlA~G~~~~~ 176 (382)
. +...+....+.+++.+.+.+.|++++.++++++..+++.+.+... ..++++|.||.|+|.++..
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 0 101256677888888888889999988888888877777666532 2469999999999987644
No 101
>PLN02463 lycopene beta cyclase
Probab=99.19 E-value=6e-10 Score=106.58 Aligned_cols=121 Identities=19% Similarity=0.135 Sum_probs=84.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCccee--------------cCCC--------cccCCCC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLT--------------TTSD--------VENFPGF 113 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~--------------~~~~--------~~~~~~~ 113 (382)
..+||+|||||+||+++|..|++.|++|.|+|+....... ..+.|. .... .......
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 4589999999999999999999999999999974211110 011100 0000 0000011
Q ss_pred CC-CCChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCe-EEEcCEEEEccCCCCcCC
Q 016820 114 PQ-GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSK-SVLADTVIVATGAVAKKL 177 (382)
Q Consensus 114 ~~-~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~-~~~~d~lvlA~G~~~~~~ 177 (382)
+. .+...++.+.+.+.+.+.|++++..+|++|+.+++.+.+.++++ ++++|.||.|+|..+...
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~ 172 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLV 172 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCcc
Confidence 11 24677888888888888899998778999998877777776554 799999999999976543
No 102
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.18 E-value=9.8e-10 Score=105.94 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=81.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+|+|||+|++|+++|..|++.|.+|+++++. .. + .....+++.+.+.+.+++.|++
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~----~~-------------~----l~~~~~~~~~~~~~~l~~~GI~ 214 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAA----ST-------------I----LPREEPSVAALAKQYMEEDGIT 214 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----Cc-------------c----CCCCCHHHHHHHHHHHHHcCCE
Confidence 4578999999999999999999999999999941 00 0 0112356777788888899999
Q ss_pred EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++.+++.+++.+.+..++.++.+|.||+|+|.+|+...
T Consensus 215 i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 215 FLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEP 257 (438)
T ss_pred EEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCccc
Confidence 9988 79999877666767666778999999999999998653
No 103
>PRK08275 putative oxidoreductase; Provisional
Probab=99.17 E-value=4.5e-09 Score=104.02 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=43.2
Q ss_pred CceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820 320 GYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 371 (382)
Q Consensus 320 g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~ 371 (382)
|++.+|. ..+|+.|+|||+|||+.........++..|+.|+.++++++.+.
T Consensus 357 Ggi~~d~-~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~ 407 (554)
T PRK08275 357 SGVWVNE-KAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEYVAGR 407 (554)
T ss_pred CcEEECC-CCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899998 78899999999999975445567789999999999999988654
No 104
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.16 E-value=4.2e-10 Score=99.89 Aligned_cols=118 Identities=27% Similarity=0.340 Sum_probs=79.2
Q ss_pred cccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec-----CC-Cc----------ccCCC--CC-
Q 016820 54 IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT-----TS-DV----------ENFPG--FP- 114 (382)
Q Consensus 54 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~-----~~-~~----------~~~~~--~~- 114 (382)
.+...+||+|||||++|+.+|+.|++.|++|+|+|+.. .+|+.+.. .. .. ..++. ..
T Consensus 21 ~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~----~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~ 96 (257)
T PRK04176 21 LDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL----SFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVED 96 (257)
T ss_pred HHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC----CCCCccccCccccccccchHHHHHHHHHCCCCceeecC
Confidence 34567899999999999999999999999999999632 22322110 00 00 00000 00
Q ss_pred --CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEE-EEE------------CCeEEEcCEEEEccCCCCc
Q 016820 115 --QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFK-VFT------------DSKSVLADTVIVATGAVAK 175 (382)
Q Consensus 115 --~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~-v~~------------~~~~~~~d~lvlA~G~~~~ 175 (382)
......++...+.+.+.+.|++++.+ +|.++..+++ .+. +.. +..+++++.||.|||....
T Consensus 97 g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 97 GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 12356788888888899999999988 6888865444 321 111 1246999999999997543
No 105
>PRK10015 oxidoreductase; Provisional
Probab=99.16 E-value=3.9e-10 Score=108.01 Aligned_cols=120 Identities=23% Similarity=0.254 Sum_probs=81.6
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC--CCCCCcceecCC------C------c---------------
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN--DIAPGGQLTTTS------D------V--------------- 107 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--~~~~gg~~~~~~------~------~--------------- 107 (382)
.++||+||||||||+++|+.|++.|++|+|||+.... ....|+.+.... . .
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 4589999999999999999999999999999964221 112233221100 0 0
Q ss_pred ----ccCCC----C----CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECCeEEEcCEEEEccCCC
Q 016820 108 ----ENFPG----F----PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAV 173 (382)
Q Consensus 108 ----~~~~~----~----~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lvlA~G~~ 173 (382)
..+.. . ...+.+..+-+.+.+.+.+.|++++.+ +|+++..+++.+. +.+++.++.+|.||+|+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 00000 0 011344566677888888899999988 7888877665554 45566679999999999986
Q ss_pred CcC
Q 016820 174 AKK 176 (382)
Q Consensus 174 ~~~ 176 (382)
+..
T Consensus 164 s~v 166 (429)
T PRK10015 164 SML 166 (429)
T ss_pred hhh
Confidence 543
No 106
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.16 E-value=7.3e-10 Score=106.43 Aligned_cols=122 Identities=24% Similarity=0.316 Sum_probs=82.4
Q ss_pred ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC------------------------CCc-cc
Q 016820 55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT------------------------SDV-EN 109 (382)
Q Consensus 55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~------------------------~~~-~~ 109 (382)
...++||+||||||||+++|..|++.|++|+|+|+.......+|+.+... ... ..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~ 115 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 115 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence 34568999999999999999999999999999997543333344432100 000 00
Q ss_pred CC----CCCC--CCChHHHHHHHHHHHHHcCcEEEEeeEEEEEec---CCcEEEEE--C--------CeEEEcCEEEEcc
Q 016820 110 FP----GFPQ--GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFK---SRPFKVFT--D--------SKSVLADTVIVAT 170 (382)
Q Consensus 110 ~~----~~~~--~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~---~~~~~v~~--~--------~~~~~~d~lvlA~ 170 (382)
+. ..+. .+.+..+.+.|.+.+.+.|++++.+++.+++.+ ++.+.+.. . ..++++|.||.|+
T Consensus 116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD 195 (450)
T PLN00093 116 IGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD 195 (450)
T ss_pred ecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence 00 0001 146677888898889999999988887777642 23344432 1 2469999999999
Q ss_pred CCCCcC
Q 016820 171 GAVAKK 176 (382)
Q Consensus 171 G~~~~~ 176 (382)
|..+..
T Consensus 196 G~~S~v 201 (450)
T PLN00093 196 GANSRV 201 (450)
T ss_pred CcchHH
Confidence 987644
No 107
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.15 E-value=4.1e-10 Score=106.96 Aligned_cols=120 Identities=24% Similarity=0.276 Sum_probs=83.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC--CCCcceecCCCcc-------------------cCCC---
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI--APGGQLTTTSDVE-------------------NFPG--- 112 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~--~~gg~~~~~~~~~-------------------~~~~--- 112 (382)
.++||+||||||||++||+.|++.|++|+|+|+...-+. ..++.+. ..... .++.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~-~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~ 80 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLS-PRALEELIPDFDEEIERKVTGARIYFPGEKV 80 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceec-hhhHHHhCCCcchhhheeeeeeEEEecCCce
Confidence 468999999999999999999999999999996322221 2212111 10000 0010
Q ss_pred -------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--CCeEEEcCEEEEccCCCCcCC
Q 016820 113 -------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 113 -------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lvlA~G~~~~~~ 177 (382)
.-..+....+-++|.+.+.+.|.+++.+ ++..+..+++.+.+.. ++.+++++++|.|+|..+...
T Consensus 81 ~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~ 155 (396)
T COG0644 81 AIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALA 155 (396)
T ss_pred EEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHH
Confidence 0011346778888999999999999998 6888888776655443 335799999999999876443
No 108
>PRK06847 hypothetical protein; Provisional
Probab=99.14 E-value=1.2e-09 Score=103.32 Aligned_cols=119 Identities=24% Similarity=0.253 Sum_probs=84.1
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee-------------------------------cCC-
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT-------------------------------TTS- 105 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~-------------------------------~~~- 105 (382)
.+||+|||||++|+++|..|++.|++|+|+|+....... |..+. ...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~-g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVY-GAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccC-CceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 579999999999999999999999999999974321111 11000 000
Q ss_pred C-cccCC-------CCC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCC
Q 016820 106 D-VENFP-------GFP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAV 173 (382)
Q Consensus 106 ~-~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~ 173 (382)
. ...++ .++ ..+...++.+.+.+.+.+.|++++.+ ++++++.+++.+.+.. ++.++.+|.||.|+|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 0 00000 011 23456788889999888889999998 7999987777777665 45569999999999997
Q ss_pred CcCC
Q 016820 174 AKKL 177 (382)
Q Consensus 174 ~~~~ 177 (382)
+...
T Consensus 163 s~~r 166 (375)
T PRK06847 163 SKVR 166 (375)
T ss_pred cchh
Confidence 7553
No 109
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.14 E-value=4.5e-10 Score=102.34 Aligned_cols=118 Identities=24% Similarity=0.281 Sum_probs=80.2
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCccee------------------------cC-CCcccCCC
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLT------------------------TT-SDVENFPG 112 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~------------------------~~-~~~~~~~~ 112 (382)
+||+|||||++|+++|+.|++.|.+|+|+|+....... .+..+. .. ......+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 58999999999999999999999999999974321111 111000 00 00000000
Q ss_pred ---CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--CCeEEEcCEEEEccCCCCcC
Q 016820 113 ---FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 113 ---~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lvlA~G~~~~~ 176 (382)
....+...++.+.+.+.+.+.|++++.+ +++++..+++.+.+.. ++.++++|+||+|+|.....
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~ 150 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIV 150 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHH
Confidence 0012456788888999899999999888 7888877776655433 34579999999999987543
No 110
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.11 E-value=1.8e-09 Score=104.55 Aligned_cols=101 Identities=22% Similarity=0.219 Sum_probs=79.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+++|||||++|+++|..|.+.|.+|+|+++. . .+ ++ ....++.+.+.+.+++.|++
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~----~----~l--------l~-----~~d~e~~~~l~~~L~~~GI~ 227 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMA----P----QL--------LP-----GEDEDIAHILREKLENDGVK 227 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecC----C----Cc--------Cc-----cccHHHHHHHHHHHHHCCCE
Confidence 4579999999999999999999999999999941 0 00 11 12467788888888899999
Q ss_pred EEEe-eEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++..++.+++.+.+..++ .++.+|.||+|+|.+|+...
T Consensus 228 i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 228 IFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred EEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 9998 688998776656665444 35999999999999998653
No 111
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.10 E-value=1.3e-09 Score=104.46 Aligned_cols=120 Identities=24% Similarity=0.251 Sum_probs=82.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC--CCCCCcceecCC------------Ccc--------------
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN--DIAPGGQLTTTS------------DVE-------------- 108 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--~~~~gg~~~~~~------------~~~-------------- 108 (382)
..+||+||||||+|+++|+.|++.|++|+|+|+.... ....|+.+.... ...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 3589999999999999999999999999999964211 112233221000 000
Q ss_pred -----cCC--------CCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcE-EEEECCeEEEcCEEEEccCCC
Q 016820 109 -----NFP--------GFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPF-KVFTDSKSVLADTVIVATGAV 173 (382)
Q Consensus 109 -----~~~--------~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lvlA~G~~ 173 (382)
.++ .....+...++.+.+.+.+.+.|++++.+ +|+++..+++.+ .+.+++.++.++.||+|+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 000 00012345677778888888999999988 788887666554 345566789999999999986
Q ss_pred CcC
Q 016820 174 AKK 176 (382)
Q Consensus 174 ~~~ 176 (382)
+..
T Consensus 164 s~l 166 (428)
T PRK10157 164 SIL 166 (428)
T ss_pred HHH
Confidence 543
No 112
>PRK14694 putative mercuric reductase; Provisional
Probab=99.10 E-value=1.9e-09 Score=104.74 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=92.6
Q ss_pred ccccccccccccccccC-C-CCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820 27 IVTTSSAAAAASFSATT-A-PKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT 104 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~ 104 (382)
++||+.+..++...... . ..+.... .....+.+++|||+|+.|+++|..|++.|.+|+++++. .
T Consensus 146 iATGs~p~~p~i~G~~~~~~~~~~~~~-~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~---------~---- 211 (468)
T PRK14694 146 IGTGARPAEPPVPGLAETPYLTSTSAL-ELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS---------R---- 211 (468)
T ss_pred EeCCCCCCCCCCCCCCCCceEcchhhh-chhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC---------C----
Confidence 66888765554333221 1 1111111 11223579999999999999999999999999999830 0
Q ss_pred CCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820 105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
.++ ...+++.+.+++.+++.|++++.+ ++..++.+++.+.+.++++++.+|.||+|+|.+|+...
T Consensus 212 ----~l~-----~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 212 ----VLS-----QEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred ----CCC-----CCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCC
Confidence 011 134577888888889999999998 78899877766666666678999999999999998753
No 113
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.09 E-value=3.5e-09 Score=103.01 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=76.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
...+|+|||||++|+++|..|++.|.+|+|+|+.. . + ++ ....++.+.+.+.+++.|++
T Consensus 179 ~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~----~----i--------l~-----~~~~~~~~~l~~~l~~~gI~ 237 (472)
T PRK05976 179 LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD----R----I--------LP-----TEDAELSKEVARLLKKLGVR 237 (472)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC----c----c--------CC-----cCCHHHHHHHHHHHHhcCCE
Confidence 45799999999999999999999999999999410 0 0 11 12456778888888899999
Q ss_pred EEEe-eEEEEEe--cCCcEEEEE-CC--eEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDF--KSRPFKVFT-DS--KSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~--~~~~~~v~~-~~--~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++..++. +++...+.+ ++ .++.+|.||+|+|.+|+...
T Consensus 238 i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 238 VVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence 9999 6888875 333222322 33 35999999999999998754
No 114
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.09 E-value=1.9e-09 Score=95.47 Aligned_cols=121 Identities=24% Similarity=0.297 Sum_probs=78.3
Q ss_pred cccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC--CCCCcceecCC-------Cc---ccCCCCC--C---C
Q 016820 54 IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND--IAPGGQLTTTS-------DV---ENFPGFP--Q---G 116 (382)
Q Consensus 54 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~--~~~gg~~~~~~-------~~---~~~~~~~--~---~ 116 (382)
.+...+||+|||||++|+.+|+.|++.|.+|+|+|+...-+ ...++...... .+ ..++..+ . .
T Consensus 17 ~~~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~ 96 (254)
T TIGR00292 17 LDYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVV 96 (254)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEE
Confidence 34467999999999999999999999999999999642111 11111111000 00 0001000 0 1
Q ss_pred CChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC--cE-EEEE------------CCeEEEcCEEEEccCCCC
Q 016820 117 ILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR--PF-KVFT------------DSKSVLADTVIVATGAVA 174 (382)
Q Consensus 117 ~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~--~~-~v~~------------~~~~~~~d~lvlA~G~~~ 174 (382)
....++.+.+.+.+.+.|++++.+ ++.++..+++ .+ -+.. +...++++.||.|||...
T Consensus 97 ~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 97 ADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred eeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 245678888888889999999888 6888876554 22 1221 124689999999999764
No 115
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=5.5e-09 Score=103.27 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=41.1
Q ss_pred CCceeeCCCCCcCCCCceEEecccCCch-------hhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQDKK-------YRQAVTAAGTGCMAALEAEHYLQEI 371 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~-------~~~~~~a~~~g~~aa~~i~~~l~~~ 371 (382)
.|.+.+|. ..+|..||+||+|++++.. -.....|+..|+.|++++++++.+.
T Consensus 348 ~GGi~vd~-~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~~ 406 (543)
T PRK06263 348 MGGIRINE-DCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAENN 406 (543)
T ss_pred cCCEEECC-CCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhhc
Confidence 58899998 6679999999999986421 1235578999999999999987643
No 116
>PRK06834 hypothetical protein; Provisional
Probab=99.08 E-value=2.3e-09 Score=104.32 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=84.2
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC---CCCCccee----------------c-------CC------
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND---IAPGGQLT----------------T-------TS------ 105 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~---~~~gg~~~----------------~-------~~------ 105 (382)
.+||+||||||+|+++|..|++.|++|+|||+..... ...++... . ..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 5799999999999999999999999999999753211 11111000 0 00
Q ss_pred CcccCCC---CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCCCCC
Q 016820 106 DVENFPG---FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKLQFP 180 (382)
Q Consensus 106 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~~~~ 180 (382)
+...++. +...+....+.+.+.+.+++.|++++.+ +++++..+++.+.+... +.++++|+||.|.|.++......
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 0000000 0111234566777778888889999988 79999888877777654 34799999999999988655433
Q ss_pred C
Q 016820 181 G 181 (382)
Q Consensus 181 g 181 (382)
|
T Consensus 163 g 163 (488)
T PRK06834 163 G 163 (488)
T ss_pred C
Confidence 3
No 117
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.08 E-value=3e-08 Score=92.91 Aligned_cols=111 Identities=18% Similarity=0.139 Sum_probs=70.0
Q ss_pred HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---------ccccc--
Q 016820 248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---------GQLDL-- 316 (382)
Q Consensus 248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---------~~~~~-- 316 (382)
.+.+++.|++++.+..+.++..+++. +..+.... +....+.+|.+|+|+|.--...+.. -++.+
T Consensus 270 ~~~~~~~Gg~il~g~~V~~i~~~~~~--v~~V~t~~---g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~ 344 (419)
T TIGR03378 270 KHRFEQLGGVMLPGDRVLRAEFEGNR--VTRIHTRN---HRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQ 344 (419)
T ss_pred HHHHHHCCCEEEECcEEEEEEeeCCe--EEEEEecC---CccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCC
Confidence 35567889999999999998876653 33333222 2224799999999999872222111 11211
Q ss_pred --cC---------------CCceeeCCCCCcC-----CCCceEEecccCCch--h--h-HHHHHHhhHHHHHHHH
Q 016820 317 --HS---------------DGYIITKPGTTHT-----SVPGVFAAGDVQDKK--Y--R-QAVTAAGTGCMAALEA 364 (382)
Q Consensus 317 --~~---------------~g~i~vd~~~~~t-----~~~~vya~GD~~~~~--~--~-~~~~a~~~g~~aa~~i 364 (382)
+. .-.+.+|+. +++ ..+|+|++|.+.+.+ . + ....|+..|..||++|
T Consensus 345 ~~~r~~W~~~~ff~~~p~~~~GV~~d~~-lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 345 LPDRDQWYQHRFFAPHPFMQFGVKTDAQ-LRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQI 418 (419)
T ss_pred CcchhhhcchhhcCCChhhhcCceEccc-cCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhh
Confidence 00 123667774 442 389999999988643 1 1 2347888888888876
No 118
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.07 E-value=8.8e-10 Score=79.47 Aligned_cols=74 Identities=27% Similarity=0.397 Sum_probs=62.1
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEE
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKV 281 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~ 281 (382)
+++|||+|.+|+|+|..|.+.+++|+++++.+.+.. ......+.+++.||++++++.+.+++.++++ ++ |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG--VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS--EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE--EE-EEE
Confidence 589999999999999999999999999999998851 1223346788889999999999999999986 44 666
Q ss_pred Ee
Q 016820 282 KN 283 (382)
Q Consensus 282 ~~ 283 (382)
++
T Consensus 78 ~~ 79 (80)
T PF00070_consen 78 ED 79 (80)
T ss_dssp ET
T ss_pred ec
Confidence 54
No 119
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.07 E-value=1.4e-09 Score=103.43 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=83.4
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCC-Cc--c---ee--------------c-----CCCc---
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAP-GG--Q---LT--------------T-----TSDV--- 107 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~-gg--~---~~--------------~-----~~~~--- 107 (382)
...+||+|||||++|+++|+.|++.|++|+|||+........ +. . +. . ....
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 346899999999999999999999999999999743211110 10 0 00 0 0000
Q ss_pred ----------ccCCC--C-----CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEE
Q 016820 108 ----------ENFPG--F-----PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIV 168 (382)
Q Consensus 108 ----------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvl 168 (382)
..+.. . ...+...++.+.+.+.+.+.|++++.+ +|+++..+++.+.+..+ +.++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEE
Confidence 00000 0 001234667778888888889999888 79999887777777664 45799999999
Q ss_pred ccCCCCcCCC
Q 016820 169 ATGAVAKKLQ 178 (382)
Q Consensus 169 A~G~~~~~~~ 178 (382)
|+|.++....
T Consensus 164 AdG~~S~vr~ 173 (392)
T PRK08773 164 ADGAASTLRE 173 (392)
T ss_pred ecCCCchHHH
Confidence 9999875443
No 120
>PRK14727 putative mercuric reductase; Provisional
Probab=99.06 E-value=3.2e-09 Score=103.42 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=81.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+++|||+|+.|+++|..|++.|.+|+|+++. .+ + ....+++.+.+++.+++.|++
T Consensus 187 ~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~---------~~--------l-----~~~d~~~~~~l~~~L~~~GV~ 244 (479)
T PRK14727 187 LPASLTVIGSSVVAAEIAQAYARLGSRVTILARS---------TL--------L-----FREDPLLGETLTACFEKEGIE 244 (479)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC---------CC--------C-----CcchHHHHHHHHHHHHhCCCE
Confidence 3578999999999999999999999999999830 00 1 113456778888888999999
Q ss_pred EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++..++.+++.+.+.++++++.+|.+|+|+|.+|+...
T Consensus 245 i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 245 VLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHD 287 (479)
T ss_pred EEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccC
Confidence 9988 78888876666777766778999999999999998763
No 121
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.06 E-value=5e-09 Score=101.81 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=79.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++++|||||++|+++|..|++.|.+|+|+|+.. . .++ ....++.+.+.+.+++.|++
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~----~------------~l~-----~~~~~~~~~~~~~l~~~gi~ 227 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD----R------------ILP-----GEDAEVSKVVAKALKKKGVK 227 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC----C------------CCC-----CCCHHHHHHHHHHHHHcCCE
Confidence 45799999999999999999999999999999420 0 011 12356777888888899999
Q ss_pred EEEe-eEEEEEecCCcEEEEEC-C--eEEEcCEEEEccCCCCcCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFTD-S--KSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~~-~--~~~~~d~lvlA~G~~~~~~ 177 (382)
++.+ ++.+++.+++.+.+... + .++.+|.||+|+|..|+..
T Consensus 228 i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 228 ILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 9998 79999877776666543 3 3699999999999999876
No 122
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.06 E-value=8.9e-09 Score=102.72 Aligned_cols=44 Identities=32% Similarity=0.403 Sum_probs=37.2
Q ss_pred CCCCcCCCCceEEecccCCc-hhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 326 PGTTHTSVPGVFAAGDVQDK-KYRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 326 ~~~~~t~~~~vya~GD~~~~-~~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
+ ..+|+.|||||+|||++. ...+...+..+|+.++.++++++..
T Consensus 389 ~-~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 389 Y-NRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred c-ccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 6 678999999999999752 3567778889999999999999865
No 123
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.05 E-value=3.6e-09 Score=105.06 Aligned_cols=52 Identities=21% Similarity=0.200 Sum_probs=41.8
Q ss_pred CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQEI 371 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~~ 371 (382)
.|.|.+|. ..+|..|++||+|+|++ .. ......|+..|+.|++++++++.+.
T Consensus 358 ~GGi~vd~-~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~ 417 (582)
T PRK09231 358 MGGIETDQ-NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAATA 417 (582)
T ss_pred CCCEEECC-CCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 58899998 67799999999999864 11 2345678899999999999988643
No 124
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.05 E-value=3.8e-09 Score=76.13 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=62.1
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEE
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFT 139 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 139 (382)
+++|||||+.|+++|..|+++|.+|+|+++. ..+.....+++.+++.+.+++.|++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~---------------------~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERS---------------------DRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESS---------------------SSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEecc---------------------chhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 5899999999999999999999999999941 1111234578889999999999999999
Q ss_pred e-eEEEEEecCCcEEEEE
Q 016820 140 E-TVSKVDFKSRPFKVFT 156 (382)
Q Consensus 140 ~-~v~~i~~~~~~~~v~~ 156 (382)
+ .+.+++.+++.+.+..
T Consensus 60 ~~~v~~i~~~~~~~~V~~ 77 (80)
T PF00070_consen 60 NTKVKEIEKDGDGVEVTL 77 (80)
T ss_dssp SEEEEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeCCEEEEEE
Confidence 9 6999998887654543
No 125
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.05 E-value=2.6e-09 Score=101.43 Aligned_cols=115 Identities=19% Similarity=0.166 Sum_probs=79.4
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCcceec-----------CCCccc-----CCC------CCC-
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLTT-----------TSDVEN-----FPG------FPQ- 115 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~~-----------~~~~~~-----~~~------~~~- 115 (382)
||+|||||++|+++|+.|++.|++|+|||+....... ..+.+.. ...+.. ++. .+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999999999964211100 0000000 000000 010 111
Q ss_pred CCChHHHHHHHHHHHHHcCcEEEEeeEEEEEec-CCcEEEEECCe-EEEcCEEEEccCCCC
Q 016820 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFK-SRPFKVFTDSK-SVLADTVIVATGAVA 174 (382)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~-~~~~~v~~~~~-~~~~d~lvlA~G~~~ 174 (382)
.+...++.+.+.+.+.+.|++++.+++..+..+ ++.+.+.++++ +++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 245678888998888888999987788888776 55666766554 799999999999987
No 126
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.04 E-value=3.6e-09 Score=100.55 Aligned_cols=120 Identities=23% Similarity=0.322 Sum_probs=79.6
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec------------------------CCCc-ccC---
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT------------------------TSDV-ENF--- 110 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~------------------------~~~~-~~~--- 110 (382)
+||+||||||+|+++|..|++.|++|+|+|+.......+|+.+.. +... ..+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 489999999999999999999999999999753322333432210 0000 000
Q ss_pred -CC--CCCCCChHHHHHHHHHHHHHcCcEEEEeeEEEEEe---cCCcEEEEE--C--------CeEEEcCEEEEccCCCC
Q 016820 111 -PG--FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDF---KSRPFKVFT--D--------SKSVLADTVIVATGAVA 174 (382)
Q Consensus 111 -~~--~~~~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~---~~~~~~v~~--~--------~~~~~~d~lvlA~G~~~ 174 (382)
+. +...+....+-+++.+.+.+.|++++.+++.++.. .++.+.+.. . ..+++++.||.|+|..+
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 00124567777888888999999998888777643 223344431 1 23699999999999987
Q ss_pred cCCC
Q 016820 175 KKLQ 178 (382)
Q Consensus 175 ~~~~ 178 (382)
....
T Consensus 161 ~v~~ 164 (398)
T TIGR02028 161 RVAK 164 (398)
T ss_pred HHHH
Confidence 6543
No 127
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.03 E-value=3.5e-09 Score=101.47 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=78.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCcceecC------------------------------C
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLTTT------------------------------S 105 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~~~------------------------------~ 105 (382)
..+||+|||||++|+++|..|++.|++|+|+|+....... .|..+... .
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 4589999999999999999999999999999975322111 12110000 0
Q ss_pred C---cccCCC--CCC-----CCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC--C--eEEEcCEEEEc
Q 016820 106 D---VENFPG--FPQ-----GILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD--S--KSVLADTVIVA 169 (382)
Q Consensus 106 ~---~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~--~--~~~~~d~lvlA 169 (382)
. ...+.. ... ......+.+.+.+.+.+. +++++.+ ++++++.+++.+.+... + .++++|.||.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgA 176 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAA 176 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEe
Confidence 0 000110 000 011245666676666665 7998877 78899877777666543 3 35999999999
Q ss_pred cCCCCcCC
Q 016820 170 TGAVAKKL 177 (382)
Q Consensus 170 ~G~~~~~~ 177 (382)
.|.++..-
T Consensus 177 DG~~S~vR 184 (415)
T PRK07364 177 DGARSPIR 184 (415)
T ss_pred CCCCchhH
Confidence 99977543
No 128
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.03 E-value=2.9e-09 Score=101.12 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=81.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCc-----c---------eecCC--------Ccc------
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG-----Q---------LTTTS--------DVE------ 108 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg-----~---------~~~~~--------~~~------ 108 (382)
+.+||+|||||++|+++|+.|++.|++|+|+|+.........+ . +.... ...
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 3579999999999999999999999999999974322110000 0 00000 000
Q ss_pred ---------cCC----CCC---CCCChHHHHHHHHHHHHHcC-cEEEEeeEEEEEecCCcEEEEECC-eEEEcCEEEEcc
Q 016820 109 ---------NFP----GFP---QGILGGDLMDRCRNQSLRFG-TQIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVAT 170 (382)
Q Consensus 109 ---------~~~----~~~---~~~~~~~~~~~~~~~~~~~g-i~~~~~~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~ 170 (382)
.+. ..| ..+....+.+.+.+.+.+.+ ++++..+++++..+++.+.+.+++ .++++|+||.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ad 163 (388)
T PRK07608 84 VFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGAD 163 (388)
T ss_pred EEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEeC
Confidence 000 001 11235677788888888887 888844788988777777777644 469999999999
Q ss_pred CCCCcCC
Q 016820 171 GAVAKKL 177 (382)
Q Consensus 171 G~~~~~~ 177 (382)
|.++...
T Consensus 164 G~~S~vr 170 (388)
T PRK07608 164 GAHSWVR 170 (388)
T ss_pred CCCchHH
Confidence 9976544
No 129
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.03 E-value=5.2e-09 Score=101.64 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=89.4
Q ss_pred ccccccccccccccccC--CCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820 27 IVTTSSAAAAASFSATT--APKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT 104 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~ 104 (382)
+++|+.+..+....... ........ .......+++|||+|++|+++|..|+++|.+|+|+++. ..+
T Consensus 134 iATGs~p~~p~i~G~~~~~~~~~~~~~-~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~--------~~~--- 201 (463)
T TIGR02053 134 IATGARPAIPPIPGLKEAGYLTSEEAL-ALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRS--------DRL--- 201 (463)
T ss_pred EcCCCCCCCCCCCCcccCceECchhhh-CcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--------CcC---
Confidence 66887765443332221 11111111 11223579999999999999999999999999999941 000
Q ss_pred CCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE----CCeEEEcCEEEEccCCCCcCCCC
Q 016820 105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQF 179 (382)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lvlA~G~~~~~~~~ 179 (382)
++ ...+++...+++.+++.|++++.+ +|..++.+++.+.+.. ++.++.+|.||+|+|.+|+...+
T Consensus 202 -----l~-----~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l 271 (463)
T TIGR02053 202 -----LP-----REEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGL 271 (463)
T ss_pred -----CC-----ccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCC
Confidence 11 124567788888888999999998 5999987655444433 22569999999999999987643
No 130
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.03 E-value=2.3e-09 Score=102.33 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=83.5
Q ss_pred ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCC---CCccee---------------------------c---
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIA---PGGQLT---------------------------T--- 103 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~---~gg~~~---------------------------~--- 103 (382)
+||+|||||++|+++|..|++.| ++|+|+|+....... .+..+. .
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999995 999999975321111 111000 0
Q ss_pred CC-C-----cccC-----CCCC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEE
Q 016820 104 TS-D-----VENF-----PGFP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIV 168 (382)
Q Consensus 104 ~~-~-----~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvl 168 (382)
.. . ...+ ...+ ..+...++.+.+.+.+.+.|++++.+ +|++++.+++.+.+.. ++.++.+|.||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~ 161 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVA 161 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEE
Confidence 00 0 0000 0011 12355778888888888889999888 7999988887777765 445699999999
Q ss_pred ccCCCCcCCCC
Q 016820 169 ATGAVAKKLQF 179 (382)
Q Consensus 169 A~G~~~~~~~~ 179 (382)
|+|.++.....
T Consensus 162 AdG~~S~vr~~ 172 (403)
T PRK07333 162 ADGARSKLREL 172 (403)
T ss_pred cCCCChHHHHH
Confidence 99998765433
No 131
>PRK06370 mercuric reductase; Validated
Probab=99.03 E-value=6.2e-09 Score=101.10 Aligned_cols=129 Identities=17% Similarity=0.102 Sum_probs=88.6
Q ss_pred ccccccccccccccccC--CCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820 27 IVTTSSAAAAASFSATT--APKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT 104 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~ 104 (382)
+++|+.+..+....... ...+.... .....+++|+|||+|+.|+++|..|++.|.+|+|+++. ..+
T Consensus 139 iATGs~p~~p~i~G~~~~~~~~~~~~~-~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~----~~~------- 206 (463)
T PRK06370 139 INTGARAAIPPIPGLDEVGYLTNETIF-SLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG----PRL------- 206 (463)
T ss_pred EcCCCCCCCCCCCCCCcCceEcchHhh-CccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC----CCC-------
Confidence 66887766554332221 11111111 11234579999999999999999999999999999941 000
Q ss_pred CCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE----CCeEEEcCEEEEccCCCCcCC
Q 016820 105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lvlA~G~~~~~~ 177 (382)
+ .....++.+.+.+.+++.|++++.+ ++.+++.+++.+.+.. ++.++.+|.||+|+|.+|+..
T Consensus 207 -----l-----~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 207 -----L-----PREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred -----C-----cccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 0 1123567778888888999999988 7999987655443332 234699999999999999875
No 132
>PLN02697 lycopene epsilon cyclase
Probab=99.03 E-value=5.7e-09 Score=101.54 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=80.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC--------------CC-cccC-------CCCC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT--------------SD-VENF-------PGFP 114 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~--------------~~-~~~~-------~~~~ 114 (382)
..+||+|||||+||+++|..|++.|++|+|||+....... .|.|... .. ...+ ...+
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n-~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-YGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc-cccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 3589999999999999999999999999999963111111 1111100 00 0000 0111
Q ss_pred C-CCChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEE--EECCeEEEcCEEEEccCCCC
Q 016820 115 Q-GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKV--FTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 115 ~-~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v--~~~~~~~~~d~lvlA~G~~~ 174 (382)
. .+....+.+.+.+.+.+.|++++..+|+.+..+++.+.+ ..++.++.++.||.|+|..+
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 1 256778888898888888999977789999876665432 33567799999999999976
No 133
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.03 E-value=3.9e-09 Score=103.31 Aligned_cols=32 Identities=38% Similarity=0.345 Sum_probs=29.6
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
++||||||+|.||+.||.++++ |.+|+|+||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~ 34 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKK 34 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence 5799999999999999999976 9999999973
No 134
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.03 E-value=4.5e-09 Score=109.51 Aligned_cols=51 Identities=27% Similarity=0.303 Sum_probs=44.5
Q ss_pred CCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
.|+|.||. ..+|+.||+||+|||++....+...+...|+.++.++++++.+
T Consensus 361 ~GGi~vd~-~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~~~~~ 411 (897)
T PRK13800 361 ASGVWVDE-HARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAGTLAE 411 (897)
T ss_pred cceEEecC-CCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHHHHhc
Confidence 48999998 7889999999999998755677888999999999999988754
No 135
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.02 E-value=1.7e-09 Score=101.03 Aligned_cols=120 Identities=23% Similarity=0.224 Sum_probs=78.6
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee------------------------------cCCC-
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT------------------------------TTSD- 106 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~------------------------------~~~~- 106 (382)
++||+|||||++|+++|..|+++|++|+|||+.........+... ....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 379999999999999999999999999999975433222222100 0000
Q ss_pred ------------cccC-----CCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--C--C--eEEE
Q 016820 107 ------------VENF-----PGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--D--S--KSVL 162 (382)
Q Consensus 107 ------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~--~--~~~~ 162 (382)
...+ ......+...++.+.|.+.+++.++++..+ ++.++..+.+.+.+.. . + .+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ 160 (356)
T PF01494_consen 81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIE 160 (356)
T ss_dssp TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEE
T ss_pred CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEE
Confidence 0000 001112346788899999999999999998 6888887776654332 2 2 2589
Q ss_pred cCEEEEccCCCCcCC
Q 016820 163 ADTVIVATGAVAKKL 177 (382)
Q Consensus 163 ~d~lvlA~G~~~~~~ 177 (382)
+|.||.|.|.++..-
T Consensus 161 adlvVgADG~~S~vR 175 (356)
T PF01494_consen 161 ADLVVGADGAHSKVR 175 (356)
T ss_dssp ESEEEE-SGTT-HHH
T ss_pred EeeeecccCcccchh
Confidence 999999999987544
No 136
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.02 E-value=3.4e-09 Score=100.77 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=80.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCc----c-----------------eecC-----C-----
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG----Q-----------------LTTT-----S----- 105 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg----~-----------------~~~~-----~----- 105 (382)
..+||+|||||++|+++|..|++.|++|+|||+........++ + +... .
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 4589999999999999999999999999999974311100000 0 0000 0
Q ss_pred ------Cc-c-------cCCCCCCCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEE
Q 016820 106 ------DV-E-------NFPGFPQGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIV 168 (382)
Q Consensus 106 ------~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvl 168 (382)
.. . ..+.....+....+.+.+.+.+.+. +++++.+ +++++..+++.+.+..+ +.++++|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 163 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIG 163 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEE
Confidence 00 0 0000001134456777777777766 8999877 78888877777777654 44799999999
Q ss_pred ccCCCCcC
Q 016820 169 ATGAVAKK 176 (382)
Q Consensus 169 A~G~~~~~ 176 (382)
|.|.++..
T Consensus 164 AdG~~S~v 171 (391)
T PRK08020 164 ADGANSQV 171 (391)
T ss_pred eCCCCchh
Confidence 99998754
No 137
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.02 E-value=1.3e-08 Score=91.40 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=98.5
Q ss_pred ccceeccccccccccccccccccc--CCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC
Q 016820 19 TKARTFFGIVTTSSAAAAASFSAT--TAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA 96 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~ 96 (382)
..+..++ ++||+.....+.+..+ ...+++....+ ...+++++|||+|..||+++.-..++|.+|+++| ....
T Consensus 172 i~aKnIi-iATGSeV~~~PGI~IDekkIVSStgALsL-~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VE----f~~~ 245 (506)
T KOG1335|consen 172 IKAKNII-IATGSEVTPFPGITIDEKKIVSSTGALSL-KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVE----FLDQ 245 (506)
T ss_pred EeeeeEE-EEeCCccCCCCCeEecCceEEecCCccch-hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEE----ehhh
Confidence 3444444 5577744433333322 34444444333 4477899999999999999999999999999999 2222
Q ss_pred CCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEEEEE------CCeEEEcCEEEE
Q 016820 97 PGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFKVFT------DSKSVLADTVIV 168 (382)
Q Consensus 97 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~v~~------~~~~~~~d~lvl 168 (382)
++ .....|+.+.+++.+.+.|++|..+ +|..++...+ .+.++. +..++++|.+++
T Consensus 246 i~-----------------~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLV 308 (506)
T KOG1335|consen 246 IG-----------------GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLV 308 (506)
T ss_pred hc-----------------cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEE
Confidence 22 2245789999999999999999999 6999988876 555543 224599999999
Q ss_pred ccCCCCcCCC
Q 016820 169 ATGAVAKKLQ 178 (382)
Q Consensus 169 A~G~~~~~~~ 178 (382)
++|++|....
T Consensus 309 siGRrP~t~G 318 (506)
T KOG1335|consen 309 SIGRRPFTEG 318 (506)
T ss_pred EccCcccccC
Confidence 9999997653
No 138
>PRK08013 oxidoreductase; Provisional
Probab=99.02 E-value=3e-09 Score=101.37 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=80.4
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCc----c-----------------eec-----CCC---c-
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG----Q-----------------LTT-----TSD---V- 107 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg----~-----------------~~~-----~~~---~- 107 (382)
.+||+|||||++|+++|..|++.|++|+|+|+........|. + +.. ... .
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 479999999999999999999999999999975321111110 0 000 000 0
Q ss_pred -------c--cCC----CCCC---CCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEE
Q 016820 108 -------E--NFP----GFPQ---GILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIV 168 (382)
Q Consensus 108 -------~--~~~----~~~~---~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvl 168 (382)
. .+. +.+. .+...++.+.+.+.+.+. +++++.+ ++.+++.+++.+.+.. ++.++++|+||-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVg 162 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVG 162 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEE
Confidence 0 000 0110 133456677777777765 7999888 7999987777776654 456799999999
Q ss_pred ccCCCCcCC
Q 016820 169 ATGAVAKKL 177 (382)
Q Consensus 169 A~G~~~~~~ 177 (382)
|.|.++..-
T Consensus 163 ADG~~S~vR 171 (400)
T PRK08013 163 ADGANSWLR 171 (400)
T ss_pred eCCCCcHHH
Confidence 999987554
No 139
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.01 E-value=6.7e-09 Score=100.24 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=81.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+++|||+|+.|+++|..|++.|.+|+|+++. ..+ .+ ....++.+.+.+.+++.|++
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~--------~~~--------l~-----~~~~~~~~~l~~~l~~~gV~ 215 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAA--------SLF--------LP-----REDRDIADNIATILRDQGVD 215 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecC--------CCC--------CC-----CcCHHHHHHHHHHHHhCCCE
Confidence 4569999999999999999999999999999931 000 11 12356778888888999999
Q ss_pred EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++.+++.+++.+.+.++++++.+|.|++|+|.+|+...
T Consensus 216 v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~ 258 (441)
T PRK08010 216 IILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATAS 258 (441)
T ss_pred EEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCC
Confidence 9988 79999877666777666667999999999999998753
No 140
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.01 E-value=6.4e-09 Score=101.04 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=77.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+++|||+|+.|+++|..|++.|.+|+|+|+. .. -+| ....++.+.+.+.+++.||+
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~--------~~--------~l~-----~~d~~~~~~l~~~l~~~gV~ 229 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFL--------DR--------ALP-----NEDAEVSKEIAKQYKKLGVK 229 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecC--------CC--------cCC-----ccCHHHHHHHHHHHHHCCCE
Confidence 4579999999999999999999999999999931 00 011 12356778888888999999
Q ss_pred EEEe-eEEEEEecCCcEEEEE---CC--eEEEcCEEEEccCCCCcCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFT---DS--KSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lvlA~G~~~~~~ 177 (382)
++.+ ++++++.+++.+.+.. ++ .++.+|.||+|+|.+|+..
T Consensus 230 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 230 ILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 9998 7999987665544432 33 3699999999999999875
No 141
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.01 E-value=5.5e-09 Score=101.90 Aligned_cols=118 Identities=23% Similarity=0.244 Sum_probs=77.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc------CCCCCCCccee----c----CC-------Ccc--cC---
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM------ANDIAPGGQLT----T----TS-------DVE--NF--- 110 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~------~~~~~~gg~~~----~----~~-------~~~--~~--- 110 (382)
..+||+|||||+||++||..+++.|.+|.|||+.. .+....||... . .. +.. .+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 45899999999999999999999999999999642 11122222110 0 00 000 00
Q ss_pred -----CCC---CCCCChHHHHHHHHHHHHHc-CcEEEEeeEEEEEecCCcEE-EEE-CCeEEEcCEEEEccCCCC
Q 016820 111 -----PGF---PQGILGGDLMDRCRNQSLRF-GTQIFTETVSKVDFKSRPFK-VFT-DSKSVLADTVIVATGAVA 174 (382)
Q Consensus 111 -----~~~---~~~~~~~~~~~~~~~~~~~~-gi~~~~~~v~~i~~~~~~~~-v~~-~~~~~~~d~lvlA~G~~~ 174 (382)
|.. ...++...+...+.+.+.+. +++++.++|.++..+++.+. |.+ ++..+.++.||+|||...
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 000 01234456667777777655 89998888988876665543 444 455799999999999754
No 142
>PRK08244 hypothetical protein; Provisional
Probab=99.01 E-value=4.8e-09 Score=102.75 Aligned_cols=120 Identities=20% Similarity=0.174 Sum_probs=80.2
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc------------------------------eecCCCc
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ------------------------------LTTTSDV 107 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~------------------------------~~~~~~~ 107 (382)
++||+||||||+|+++|..|++.|++|+|||+.........+. +......
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 4799999999999999999999999999999743221111100 0000000
Q ss_pred ccCCC----CC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE---CC-eEEEcCEEEEccCCCCcC
Q 016820 108 ENFPG----FP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT---DS-KSVLADTVIVATGAVAKK 176 (382)
Q Consensus 108 ~~~~~----~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~---~~-~~~~~d~lvlA~G~~~~~ 176 (382)
..+.. .+ ..+....+.+.+.+.+.+.|++++.+ +++++..+++.+.+.. ++ .++++|+||.|.|.++..
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 00100 00 11234567777788888889999888 7989987777665543 23 369999999999998754
Q ss_pred C
Q 016820 177 L 177 (382)
Q Consensus 177 ~ 177 (382)
-
T Consensus 162 R 162 (493)
T PRK08244 162 R 162 (493)
T ss_pred H
Confidence 3
No 143
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.00 E-value=6.6e-09 Score=100.92 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=80.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++++|||+|++|+++|..|++.|.+|+++++. .. + ++ ...+++.+.+++.+++.|++
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~----~~----~--------l~-----~~~~~~~~~l~~~l~~~gV~ 229 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEAL----PR----I--------LP-----GEDKEISKLAERALKKRGIK 229 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC----CC----c--------CC-----cCCHHHHHHHHHHHHHcCCE
Confidence 3578999999999999999999999999999941 00 0 11 12367778888888999999
Q ss_pred EEEe-eEEEEEecCCcEEEEE-CC---eEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFT-DS---KSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++.+++.+++.+.+.. ++ .++.+|.||+|+|.+|+...
T Consensus 230 i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 230 IKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 9998 7999987766666553 33 46999999999999998754
No 144
>PRK13748 putative mercuric reductase; Provisional
Probab=99.00 E-value=6.1e-09 Score=103.73 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=81.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+++++|||+|+.|+++|..|.+.|.+|+|+++. . .++ ...+++.+.+++.+++.||+
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~---------~--------~l~-----~~d~~~~~~l~~~l~~~gI~ 326 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARLGSKVTILARS---------T--------LFF-----REDPAIGEAVTAAFRAEGIE 326 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC---------c--------ccc-----ccCHHHHHHHHHHHHHCCCE
Confidence 4579999999999999999999999999999931 0 011 12467788888888999999
Q ss_pred EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ .+..++.+++.+.+.++++++.+|.||+|+|.+|+...
T Consensus 327 i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 327 VLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRS 369 (561)
T ss_pred EEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCC
Confidence 9988 78888876666667666668999999999999998753
No 145
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.00 E-value=7.1e-09 Score=100.12 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=78.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+++|||||+.|+++|..|++.|.+|+|+++. +. +.....+++.+.+++.+++.||+
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~--------------------~~-il~~~d~~~~~~~~~~l~~~gI~ 223 (450)
T TIGR01421 165 LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRH--------------------ER-VLRSFDSMISETITEEYEKEGIN 223 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC--------------------CC-CCcccCHHHHHHHHHHHHHcCCE
Confidence 4579999999999999999999999999999931 00 01113456778888888999999
Q ss_pred EEEe-eEEEEEecCCc-EEEEEC-C-eEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRP-FKVFTD-S-KSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~-~~v~~~-~-~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ .+..++.+.+. +.+..+ + ..+.+|.||+|+|.+|+...
T Consensus 224 i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 224 VHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred EEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence 9998 68888765433 444443 3 45999999999999998753
No 146
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=99.00 E-value=3.5e-08 Score=92.29 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=39.6
Q ss_pred CCcC-CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCcccccc
Q 016820 328 TTHT-SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379 (382)
Q Consensus 328 ~~~t-~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~~~~ 379 (382)
++++ ..||||++|.+.+.. .-..|..+|..|+.|++..+.++++...+.+
T Consensus 324 ~l~~k~~~~l~~AGqi~g~~--Gy~ea~a~G~~Ag~n~~~~~~g~~~~~~~~~ 374 (436)
T PRK05335 324 TLQLKKRPNLFFAGQITGVE--GYVESAASGLLAGINAARLALGKEPVIPPPT 374 (436)
T ss_pred hccccCCCCEEeeeeecCch--HHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 4555 579999999999742 2339999999999999999998887655443
No 147
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.00 E-value=6.5e-09 Score=101.06 Aligned_cols=100 Identities=20% Similarity=0.121 Sum_probs=77.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+++|||||+.|+++|..|++.|.+|+++++. . .+ ....+++.+.+++.+++.||+
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~---------~--------~l-----~~~d~~~~~~l~~~L~~~gV~ 236 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS---------I--------LL-----RGFDQDCANKVGEHMEEHGVK 236 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec---------c--------cc-----cccCHHHHHHHHHHHHHcCCE
Confidence 3468999999999999999999999999999830 0 01 123467888888888999999
Q ss_pred EEEe-eEEEEEecCCcEEEEE-CC---eEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFT-DS---KSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ .+..++..++.+.+.. ++ .++.+|.|++|+|..|+...
T Consensus 237 i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 237 FKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred EEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 9998 5778876555544443 22 36999999999999998753
No 148
>PRK06184 hypothetical protein; Provisional
Probab=99.00 E-value=8.4e-09 Score=101.22 Aligned_cols=120 Identities=19% Similarity=0.169 Sum_probs=80.2
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCcc-----------------------------eecC-CC
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQ-----------------------------LTTT-SD 106 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~-----------------------------~~~~-~~ 106 (382)
.+||+||||||+|+++|..|++.|++|+|||+....... .+.. +... ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 579999999999999999999999999999974221110 0000 0000 00
Q ss_pred c------ccC---C--CCC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE----CCeEEEcCEEEE
Q 016820 107 V------ENF---P--GFP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT----DSKSVLADTVIV 168 (382)
Q Consensus 107 ~------~~~---~--~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lvl 168 (382)
. ... + .++ ..+....+.+.+.+.+.+.|++++.+ ++++++.+++.+++.. ++.++++|+||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVg 162 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVG 162 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEE
Confidence 0 000 0 001 11233456667778788889999988 7999988777776654 335699999999
Q ss_pred ccCCCCcCC
Q 016820 169 ATGAVAKKL 177 (382)
Q Consensus 169 A~G~~~~~~ 177 (382)
|+|.++..-
T Consensus 163 ADG~~S~vR 171 (502)
T PRK06184 163 ADGGRSFVR 171 (502)
T ss_pred CCCCchHHH
Confidence 999987543
No 149
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.99 E-value=6.5e-09 Score=100.98 Aligned_cols=101 Identities=21% Similarity=0.181 Sum_probs=80.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+++++|||+|+.|+++|..|++.|.+|+|+++. . .+ ......++.+.+.+.+++.|++
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~----~-------------~~----l~~~d~~~~~~l~~~l~~~gI~ 232 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR----D-------------RL----LSFLDDEISDALSYHLRDSGVT 232 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----C-------------Cc----CCcCCHHHHHHHHHHHHHcCCE
Confidence 4679999999999999999999999999999941 0 00 0123467788888888899999
Q ss_pred EEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ .++.++.+++.+.+.. ++.++.+|.||+|+|.+|+...
T Consensus 233 v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 233 IRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred EEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence 9988 7888887666666654 3456999999999999998753
No 150
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.99 E-value=6.1e-09 Score=97.43 Aligned_cols=57 Identities=26% Similarity=0.313 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECCeEEEcCEEEEccCCCC
Q 016820 118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lvlA~G~~~ 174 (382)
....+.+.+.+.+.+.|++++.+ +|++|+.+++.+. |.++++.+++|.||+|+|.+.
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAWS 203 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGGH
T ss_pred cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEecccccc
Confidence 46788888999999999999999 8999999999988 999888899999999999854
No 151
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.99 E-value=4.2e-09 Score=100.58 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=80.5
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC---------CCCCCccee--------------c-----CCCc--
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN---------DIAPGGQLT--------------T-----TSDV-- 107 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~---------~~~~gg~~~--------------~-----~~~~-- 107 (382)
.+||+|||||++|+++|..|++.|++|+|+|+.... ....+..+. . ....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999975310 000111100 0 0000
Q ss_pred -----------ccCCCC----C---CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-eEEEcCEEE
Q 016820 108 -----------ENFPGF----P---QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVI 167 (382)
Q Consensus 108 -----------~~~~~~----~---~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lv 167 (382)
..+... + ..+....+.+.+.+.+.+.+++++.+ ++.+++.+++.+.+...+ .++.+|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV 161 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVV 161 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 000000 0 01223456667777777789999888 799998887777776544 579999999
Q ss_pred EccCCCCcCCC
Q 016820 168 VATGAVAKKLQ 178 (382)
Q Consensus 168 lA~G~~~~~~~ 178 (382)
.|.|.++..-.
T Consensus 162 gAdG~~S~vR~ 172 (405)
T PRK05714 162 AADGANSAVRR 172 (405)
T ss_pred EecCCCchhHH
Confidence 99999775543
No 152
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.99 E-value=2.4e-08 Score=87.94 Aligned_cols=117 Identities=16% Similarity=0.047 Sum_probs=74.7
Q ss_pred HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh-----------hcccccc
Q 016820 248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF-----------VDGQLDL 316 (382)
Q Consensus 248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~-----------~~~~~~~ 316 (382)
.+.+++.|.-++.+..+.+.+-.++. ++.|.... .....+.+|..++++|.--...+ +.+.+.-
T Consensus 265 ~~~f~~~Gg~~m~Gd~V~~a~~~~~~--v~~i~trn---~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~~ 339 (421)
T COG3075 265 QRQFEQLGGLWMPGDEVKKATCKGGR--VTEIYTRN---HADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDILQ 339 (421)
T ss_pred HHHHHHcCceEecCCceeeeeeeCCe--EEEEEecc---cccCCCChhHeeeeccccccccchhhhhhhhcchhhccccc
Confidence 45677788889999999988877763 66666654 33356788999999886432211 1122222
Q ss_pred cCC-----------------CceeeCCCCCcC-----CCCceEEecccCCchhh-----HHHHHHhhHHHHHHHHHHHHH
Q 016820 317 HSD-----------------GYIITKPGTTHT-----SVPGVFAAGDVQDKKYR-----QAVTAAGTGCMAALEAEHYLQ 369 (382)
Q Consensus 317 ~~~-----------------g~i~vd~~~~~t-----~~~~vya~GD~~~~~~~-----~~~~a~~~g~~aa~~i~~~l~ 369 (382)
+++ -.+.+|+ +++. ...|+|+||.+.+.... ....|+..|..+|+.|++...
T Consensus 340 ~~dR~~W~~~~ffapqp~~qfGV~tD~-~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi~~~~~ 418 (421)
T COG3075 340 TADRAEWYHSDFFAPQPYQQFGVTTDD-TLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQIAERAG 418 (421)
T ss_pred CcchhhhhhccccCCChhHHhCccccc-ccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHHHHHhc
Confidence 221 1244555 4443 35789999999875322 234677888888888887765
Q ss_pred H
Q 016820 370 E 370 (382)
Q Consensus 370 ~ 370 (382)
+
T Consensus 419 ~ 419 (421)
T COG3075 419 G 419 (421)
T ss_pred c
Confidence 4
No 153
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.99 E-value=7.5e-09 Score=102.60 Aligned_cols=51 Identities=22% Similarity=0.162 Sum_probs=40.8
Q ss_pred CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
.|.+.+|. ..+|+.|++||+|+|++ .. ......+...|+.|+++++.+...
T Consensus 357 ~GGi~~d~-~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~ 415 (580)
T TIGR01176 357 MGGIETDI-NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAAR 415 (580)
T ss_pred CCCeeECc-CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 57789998 67899999999999863 11 135677899999999999988754
No 154
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.99 E-value=6.3e-09 Score=98.85 Aligned_cols=113 Identities=33% Similarity=0.426 Sum_probs=79.3
Q ss_pred EEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC----CCCcceecCCC--c----ccCCC-------------------
Q 016820 62 CIIGSGPAAHTAAIYAARAELKPILFEGWMANDI----APGGQLTTTSD--V----ENFPG------------------- 112 (382)
Q Consensus 62 vIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~----~~gg~~~~~~~--~----~~~~~------------------- 112 (382)
+|||||++|+++|+.|++.|.+|+|+|+...-+. .-+|.+..+.. . ..++.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999996432111 11122221110 0 00000
Q ss_pred -----------------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820 113 -----------------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 113 -----------------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
+|......++.+.+.+.+++.+++++.+ .|.++..+++.+.+.+++..+.+|.||+|+|..+
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCcEEEcCEEEECCCCcc
Confidence 1112234677888888888899999988 6889987777777777777899999999999864
No 155
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.98 E-value=6.4e-08 Score=90.24 Aligned_cols=114 Identities=23% Similarity=0.262 Sum_probs=75.5
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC----CCCCCcceecCC--Cc--------------------------
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN----DIAPGGQLTTTS--DV-------------------------- 107 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~----~~~~gg~~~~~~--~~-------------------------- 107 (382)
||+|||+|.|||++|..|.+. ++|+|+.|.... .+..||...... +.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 999999974322 112233211000 00
Q ss_pred -------------ccC----CC----------------CCCCCChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEecCC-c
Q 016820 108 -------------ENF----PG----------------FPQGILGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFKSR-P 151 (382)
Q Consensus 108 -------------~~~----~~----------------~~~~~~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~~~-~ 151 (382)
..| .+ .....++.+++..|...+++ .+|+++.+ .+.++-.+++ .
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 000 00 00124778999999988876 69999999 6777766665 2
Q ss_pred ---EEEEEC-C--eEEEcCEEEEccCCCC
Q 016820 152 ---FKVFTD-S--KSVLADTVIVATGAVA 174 (382)
Q Consensus 152 ---~~v~~~-~--~~~~~d~lvlA~G~~~ 174 (382)
+.+... + ..+.++.+|+|||.-.
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLG 196 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence 333323 2 4588999999999854
No 156
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.98 E-value=1.9e-08 Score=97.96 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=78.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+++|+|||+|+.|+++|..|++.|.+|+|+++. . .+ ......++.+.+.+.+++.|++
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~----~-------------~~----l~~~d~~~~~~~~~~l~~~gi~ 240 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEAL----P-------------AF----LAAADEQVAKEAAKAFTKQGLD 240 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC----C-------------cc----CCcCCHHHHHHHHHHHHHcCcE
Confidence 4579999999999999999999999999999941 0 00 0112367778888888889999
Q ss_pred EEEe-eEEEEEecCCcEEEEE-C--C--eEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFT-D--S--KSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~-~--~--~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ +|..++.+++.+.+.. + + ..+.+|.|++|+|.+|+...
T Consensus 241 i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 9998 7999987766555542 2 2 45999999999999998764
No 157
>PRK07846 mycothione reductase; Reviewed
Probab=98.98 E-value=1.8e-08 Score=97.29 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=87.0
Q ss_pred ccccccccccccccccC-CC-CCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820 27 IVTTSSAAAAASFSATT-AP-KISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT 104 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~ 104 (382)
++||+.+..++...... .. +..... .....+.+++|||||+.|+++|..|+++|.+|+|+++. .. +
T Consensus 134 iATGs~p~~p~i~g~~~~~~~~~~~~~-~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~----~~----l--- 201 (451)
T PRK07846 134 IAAGSRPVIPPVIADSGVRYHTSDTIM-RLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRS----GR----L--- 201 (451)
T ss_pred EcCCCCCCCCCCCCcCCccEEchHHHh-hhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC----Cc----c---
Confidence 66888776554333211 11 111111 11224579999999999999999999999999999941 00 0
Q ss_pred CCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCCC
Q 016820 105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQF 179 (382)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~~ 179 (382)
+ .....++.+.+.+.. +.+++++.+ ++++++.+++.+.+.. ++.++.+|.|++|+|.+|+...+
T Consensus 202 -----l-----~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 202 -----L-----RHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred -----c-----cccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcccc
Confidence 0 112345666665544 458999888 7889987666555554 44569999999999999987643
No 158
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.98 E-value=1.1e-08 Score=98.86 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=89.2
Q ss_pred ccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC
Q 016820 27 IVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD 106 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~ 106 (382)
++||+.+..++.........+...... .....+++|||+|++|+++|..+++.|.+|+++++. ..+
T Consensus 136 iATGs~p~~p~i~G~~~~~~~~~~~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~--------~~~----- 201 (446)
T TIGR01424 136 IAVGGRPQKPNLPGHELGITSNEAFHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRG--------ELI----- 201 (446)
T ss_pred EecCCcCCCCCCCCccceechHHhhcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeC--------CCC-----
Confidence 668877654432222111111111111 224578999999999999999999999999999931 000
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820 107 VENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~ 177 (382)
+ ....+++.+.+.+.+++.|++++.+ ++..++.+++.+.+.. ++.++.+|.||+|+|..|+..
T Consensus 202 ---l-----~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 202 ---L-----RGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred ---C-----cccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 1 1123577778888888999999998 7889987655555554 455699999999999998765
No 159
>PLN02507 glutathione reductase
Probab=98.97 E-value=8.9e-09 Score=100.51 Aligned_cols=130 Identities=19% Similarity=0.190 Sum_probs=91.3
Q ss_pred ccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC
Q 016820 27 IVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD 106 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~ 106 (382)
+++|+.+..+..........+..... .....++|+|||+|+.|+++|..+++.|.+|+|+++.
T Consensus 173 IATGs~p~~p~ipG~~~~~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~---------------- 235 (499)
T PLN02507 173 IATGSRAQRPNIPGKELAITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRK---------------- 235 (499)
T ss_pred EecCCCCCCCCCCCccceechHHhhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEec----------------
Confidence 66888765443322211111111111 1234579999999999999999999999999999931
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCCC
Q 016820 107 VENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~~ 178 (382)
..+......++.+.+.+.+++.||+++.+ ++.+++.+++.+.+..+ +.++.+|.|++|+|.+|+...
T Consensus 236 -----~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 236 -----ELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred -----CCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 00011134677888888889999999999 79999876666666554 456999999999999998754
No 160
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.97 E-value=7.9e-09 Score=86.04 Aligned_cols=118 Identities=29% Similarity=0.359 Sum_probs=76.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc--CCCCCCCcceecCCCc----------ccCCCCC--C---CCC
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM--ANDIAPGGQLTTTSDV----------ENFPGFP--Q---GIL 118 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~--~~~~~~gg~~~~~~~~----------~~~~~~~--~---~~~ 118 (382)
....||+||||||+||+||++|++.|.+|+++|+.. +.+...||.+...--. ...++-+ + -..
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~d 107 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVAD 107 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEec
Confidence 356899999999999999999999999999999642 1222223332211000 0001111 0 124
Q ss_pred hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEE-EE------------ECCeEEEcCEEEEccCCC
Q 016820 119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFK-VF------------TDSKSVLADTVIVATGAV 173 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~-v~------------~~~~~~~~d~lvlA~G~~ 173 (382)
..++...+...+-+.|.++++. .|.++-..++ ++. +. .|--.++++++|=|||..
T Consensus 108 s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 108 SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 5677777888888889999988 6888765554 221 11 133458888999999864
No 161
>PRK07236 hypothetical protein; Provisional
Probab=98.96 E-value=1.1e-08 Score=97.07 Aligned_cols=119 Identities=17% Similarity=0.135 Sum_probs=74.8
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC---------Ccc-----cCC----------
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS---------DVE-----NFP---------- 111 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~---------~~~-----~~~---------- 111 (382)
+..++|+|||||++|+++|..|++.|++|+|+|+........|+.+.... ... ..+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 34589999999999999999999999999999975322222222111000 000 000
Q ss_pred C-------CC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcC
Q 016820 112 G-------FP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 112 ~-------~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~ 176 (382)
+ .+ .......+.+.+.+.+ .+++++.+ +|+++..+++.+.+... +.++.+|.||.|.|.++..
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 0 00 0112333444443322 24567777 69999887777777654 4579999999999997654
No 162
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.96 E-value=5.1e-09 Score=96.89 Aligned_cols=113 Identities=25% Similarity=0.280 Sum_probs=72.0
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEec------ccCCCCCCCcc---------------eecCCCcc-------c--
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEG------WMANDIAPGGQ---------------LTTTSDVE-------N-- 109 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~------~~~~~~~~gg~---------------~~~~~~~~-------~-- 109 (382)
||+|||||.||++||+.+++.|++|.|+.. +..+....|+. +....+.. +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 799999999999999999999999999942 11111112211 00000000 0
Q ss_pred --CCCCC--CCCChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCcE-EEEE-CCeEEEcCEEEEccCC
Q 016820 110 --FPGFP--QGILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRPF-KVFT-DSKSVLADTVIVATGA 172 (382)
Q Consensus 110 --~~~~~--~~~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~~-~v~~-~~~~~~~d~lvlA~G~ 172 (382)
.+... ...+...+..++++.+.+ .+++++.++|+++..+++.+ .|.+ ++..+.+|.+|+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 01111 134677888888888877 58999888999998877654 3444 4566999999999998
No 163
>PRK07190 hypothetical protein; Provisional
Probab=98.96 E-value=1.3e-08 Score=99.07 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=79.6
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcce---------------------------ecC-----
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQL---------------------------TTT----- 104 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~---------------------------~~~----- 104 (382)
..+||+||||||+|+++|..|++.|++|+|||+..... ..+.. ...
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~--~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPL--EVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWAN 81 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCccc--ccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecC
Confidence 45799999999999999999999999999999743211 01110 000
Q ss_pred CCc-----c---cCCC--CC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEcc
Q 016820 105 SDV-----E---NFPG--FP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVAT 170 (382)
Q Consensus 105 ~~~-----~---~~~~--~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~ 170 (382)
... . .... .+ ..+....+.+.+.+.+.+.|++++.+ +|+++..+++.+.+.. ++.++++++||.|+
T Consensus 82 g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgAD 161 (487)
T PRK07190 82 GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGAD 161 (487)
T ss_pred CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECC
Confidence 000 0 0000 00 11223455666777788889999998 7999988777766554 34579999999999
Q ss_pred CCCCcC
Q 016820 171 GAVAKK 176 (382)
Q Consensus 171 G~~~~~ 176 (382)
|.++..
T Consensus 162 G~~S~v 167 (487)
T PRK07190 162 GSRSFV 167 (487)
T ss_pred CCCHHH
Confidence 997643
No 164
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.95 E-value=8.1e-09 Score=97.49 Aligned_cols=119 Identities=14% Similarity=0.138 Sum_probs=81.4
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC---CCcceecC--------------------CCc--------
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA---PGGQLTTT--------------------SDV-------- 107 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~---~gg~~~~~--------------------~~~-------- 107 (382)
.||+|||||++|+++|..|++.|++|+|+|+....... .+..+... ...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 68999999999999999999999999999964211111 01100000 000
Q ss_pred -----ccCCC-----CCCCCChHHHHHHHHHHHHHcC-cEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc
Q 016820 108 -----ENFPG-----FPQGILGGDLMDRCRNQSLRFG-TQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175 (382)
Q Consensus 108 -----~~~~~-----~~~~~~~~~~~~~~~~~~~~~g-i~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~ 175 (382)
..+.. +...+...++.+.+.+.+.+.+ ++++.+ +++++..+++.+.+..+++++++|.||.|.|.++.
T Consensus 82 ~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~~~~adlvIgADG~~S~ 161 (374)
T PRK06617 82 KASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANSK 161 (374)
T ss_pred CCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCCEEeeCEEEEeCCCCch
Confidence 00000 0011345778888888777775 888877 78898877777777777778999999999999875
Q ss_pred CC
Q 016820 176 KL 177 (382)
Q Consensus 176 ~~ 177 (382)
.-
T Consensus 162 vR 163 (374)
T PRK06617 162 VR 163 (374)
T ss_pred hH
Confidence 54
No 165
>PRK06116 glutathione reductase; Validated
Probab=98.94 E-value=1.4e-08 Score=98.27 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=79.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+|+|||+|+.|+++|..|++.|.+|+++++. . .+ .....+++.+.+.+.+++.|++
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~----~----~~-------------l~~~~~~~~~~l~~~L~~~GV~ 224 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG----D----AP-------------LRGFDPDIRETLVEEMEKKGIR 224 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----C----CC-------------ccccCHHHHHHHHHHHHHCCcE
Confidence 4579999999999999999999999999999941 0 00 0113357778888888999999
Q ss_pred EEEe-eEEEEEecCCc-EEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRP-FKVFT-DSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++.+++.+++. +.+.+ ++.++.+|.||+|+|.+|+...
T Consensus 225 i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 225 LHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred EECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 9988 79999876443 55554 4556999999999999998764
No 166
>PRK09126 hypothetical protein; Provisional
Probab=98.94 E-value=1.1e-08 Score=97.34 Aligned_cols=121 Identities=16% Similarity=0.181 Sum_probs=77.0
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC----CCCCcce-------------------ecCC--Cc-----
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND----IAPGGQL-------------------TTTS--DV----- 107 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~----~~~gg~~-------------------~~~~--~~----- 107 (382)
++||+|||||++|+++|..|++.|++|+|+|+..... ...|..+ .... ..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 5899999999999999999999999999999753210 1112110 0000 00
Q ss_pred --------ccCCCC---CC----CCChHHHHHHHHHHH-HHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEc
Q 016820 108 --------ENFPGF---PQ----GILGGDLMDRCRNQS-LRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVA 169 (382)
Q Consensus 108 --------~~~~~~---~~----~~~~~~~~~~~~~~~-~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA 169 (382)
..++.. .. .+....+.+.+.+.+ +..|++++.+ ++++++.+++.+.+.. ++.++.+|.||.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~A 162 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAA 162 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEe
Confidence 000000 00 012233444444444 3468999988 7889987777776664 4457999999999
Q ss_pred cCCCCcCCC
Q 016820 170 TGAVAKKLQ 178 (382)
Q Consensus 170 ~G~~~~~~~ 178 (382)
.|..+....
T Consensus 163 dG~~S~vr~ 171 (392)
T PRK09126 163 DSRFSATRR 171 (392)
T ss_pred CCCCchhhH
Confidence 999876554
No 167
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.94 E-value=1.9e-08 Score=97.64 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=77.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+++++|||+|+.|+++|..+.+.|.+|+|+|+. .. -++ ....++.+.+++.+++.|++
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~----~~------------il~-----~~d~~~~~~l~~~l~~~gV~ 231 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL----DR------------ICP-----GTDTETAKTLQKALTKQGMK 231 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC----CC------------CCC-----CCCHHHHHHHHHHHHhcCCE
Confidence 4689999999999999999999999999999931 00 011 12356778888888899999
Q ss_pred EEEe-eEEEEEecCCcEEEEE------CCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFT------DSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~------~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++.++..+++.+.+.. ++..+.+|.|++|+|..|+...
T Consensus 232 i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~ 280 (466)
T PRK06115 232 FKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQG 280 (466)
T ss_pred EEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccccc
Confidence 9998 7989987655554432 1246999999999999997653
No 168
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.93 E-value=1.4e-08 Score=96.22 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=82.7
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCC--ccee-----------c-----------------C-CC
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPG--GQLT-----------T-----------------T-SD 106 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g--g~~~-----------~-----------------~-~~ 106 (382)
.+||+|||||++|+++|..|++.|++|+|||+....-...| ..+. . . ..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 47999999999999999999999999999997511111111 1000 0 0 00
Q ss_pred --cccC-----C--CCCCCCChHHHHHHHHHHHHHcC-cEEEEe-eEEEEEecCCcEEEEE--CCeEEEcCEEEEccCCC
Q 016820 107 --VENF-----P--GFPQGILGGDLMDRCRNQSLRFG-TQIFTE-TVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAV 173 (382)
Q Consensus 107 --~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~g-i~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lvlA~G~~ 173 (382)
...+ . .+...+...++...+.+.+.+.+ ++++.+ +|+.++.+++.+.+.. ++.++++|.||-|.|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence 0000 0 00012455788888988888876 899998 7999998887766554 45569999999999997
Q ss_pred CcCC
Q 016820 174 AKKL 177 (382)
Q Consensus 174 ~~~~ 177 (382)
+..-
T Consensus 162 S~vR 165 (387)
T COG0654 162 SAVR 165 (387)
T ss_pred hHHH
Confidence 6443
No 169
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.92 E-value=8.9e-09 Score=97.55 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=79.3
Q ss_pred cEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCC-----ccee-----------cCCC-------c--------
Q 016820 60 KVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPG-----GQLT-----------TTSD-------V-------- 107 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~g-----g~~~-----------~~~~-------~-------- 107 (382)
||+|||||++|+++|..|++.| ++|+|+|+........+ ..+. .... .
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999997532222111 0000 0000 0
Q ss_pred -----ccCC----CCC---CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCC
Q 016820 108 -----ENFP----GFP---QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGA 172 (382)
Q Consensus 108 -----~~~~----~~~---~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~ 172 (382)
..+. ..+ ..+...++.+.+.+.+.+. |++++.+ +|+++..+++.+.+..+ +.++.+|.||.|.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGA 160 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCC
Confidence 0000 000 0134467778888877774 9999877 79999877777777654 456999999999998
Q ss_pred CCcC
Q 016820 173 VAKK 176 (382)
Q Consensus 173 ~~~~ 176 (382)
++..
T Consensus 161 ~S~v 164 (382)
T TIGR01984 161 NSKV 164 (382)
T ss_pred ChHH
Confidence 7643
No 170
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.92 E-value=1.3e-08 Score=96.73 Aligned_cols=122 Identities=18% Similarity=0.082 Sum_probs=79.6
Q ss_pred ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc--------------ee-------------c-CCC
Q 016820 55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ--------------LT-------------T-TSD 106 (382)
Q Consensus 55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~--------------~~-------------~-~~~ 106 (382)
.+..+||+|||||++|+++|..|++.|++|+|||+........+.. +. . ...
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT 83 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence 3456899999999999999999999999999999753211110000 00 0 000
Q ss_pred cc-------cCC-----CCC--CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEECC-eEEEcCEEEEc
Q 016820 107 VE-------NFP-----GFP--QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVIVA 169 (382)
Q Consensus 107 ~~-------~~~-----~~~--~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA 169 (382)
.. .+. ..+ ..+...++.+.+.+.+.++ ++. +.+ +|.+++.+++.+.+..++ .++++|.||.|
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~A 162 (388)
T PRK07494 84 GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGA 162 (388)
T ss_pred CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEe
Confidence 00 000 000 1234456777777777776 466 445 799998888878777644 46999999999
Q ss_pred cCCCCcCC
Q 016820 170 TGAVAKKL 177 (382)
Q Consensus 170 ~G~~~~~~ 177 (382)
+|..+...
T Consensus 163 dG~~S~vr 170 (388)
T PRK07494 163 DGRNSPVR 170 (388)
T ss_pred cCCCchhH
Confidence 99976443
No 171
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.92 E-value=1.2e-08 Score=97.21 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=77.6
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc---CCCeEEEeccc-CCCCCCC-----ccee--------------c----C-----
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWM-ANDIAPG-----GQLT--------------T----T----- 104 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~-~~~~~~g-----g~~~--------------~----~----- 104 (382)
..+||+|||||++|+++|+.|++. |++|+|+|+.. ......+ ..+. . .
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 458999999999999999999998 99999999731 1111111 0000 0 0
Q ss_pred -----CC-cc--cCC----CCC---CCCChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEecCCcEEEEECC-eEEEcCEE
Q 016820 105 -----SD-VE--NFP----GFP---QGILGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFKSRPFKVFTDS-KSVLADTV 166 (382)
Q Consensus 105 -----~~-~~--~~~----~~~---~~~~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~l 166 (382)
.. .. .+. +.+ ..+...++.+.+.+.+.+ .|++++.+ +++++..+++.+.+.+++ ..+.+|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLL 161 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEE
Confidence 00 00 000 000 012234555566665555 47899877 788998777777777644 46999999
Q ss_pred EEccCCCCcCC
Q 016820 167 IVATGAVAKKL 177 (382)
Q Consensus 167 vlA~G~~~~~~ 177 (382)
|.|.|.++..-
T Consensus 162 I~AdG~~S~vr 172 (395)
T PRK05732 162 VAADGSHSALR 172 (395)
T ss_pred EEecCCChhhH
Confidence 99999976543
No 172
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.92 E-value=2e-08 Score=97.50 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=76.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+++|||||+.|+++|..|++.|.+|+|||+. . .+ . ....+++.+.+++.+++. ++
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~----~----~i--------l-----~~~d~~~~~~~~~~l~~~-v~ 230 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMF----D----QV--------I-----PAADKDIVKVFTKRIKKQ-FN 230 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecC----C----CC--------C-----CcCCHHHHHHHHHHHhhc-eE
Confidence 4579999999999999999999999999999931 0 00 1 113466777788877777 99
Q ss_pred EEEe-eEEEEEecCCcEEEEE-C----CeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFT-D----SKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~-~----~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ .+..++.+++.+.+.. + ..++.+|.||+|+|.+|+...
T Consensus 231 i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 231 IMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred EEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCc
Confidence 9888 6888876665555543 1 135999999999999998763
No 173
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.92 E-value=2.2e-08 Score=97.24 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=79.6
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+++|||+|+.|+++|..|++.|.+|+++++. +.. ......++.+.+.+.+++.||+
T Consensus 176 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~--------------------~~~-l~~~d~~~~~~l~~~L~~~gV~ 234 (466)
T PRK07845 176 LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSR--------------------DRV-LPGEDADAAEVLEEVFARRGMT 234 (466)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC--------------------CcC-CCCCCHHHHHHHHHHHHHCCcE
Confidence 3578999999999999999999999999999931 000 0112456778888888999999
Q ss_pred EEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++..++.+++.+.+.. ++.++.+|.|++|+|.+|+...
T Consensus 235 i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 235 VLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCC
Confidence 9988 6889976666565554 4566999999999999998764
No 174
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.91 E-value=2e-08 Score=98.15 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=78.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+++|||+|+.|+++|..|++.|.+|+|+++. ..+ .....++.+.+++.+++.||+
T Consensus 181 ~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-----------------~~l-----~~~d~~~~~~l~~~l~~~GV~ 238 (499)
T PTZ00052 181 DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-----------------IPL-----RGFDRQCSEKVVEYMKEQGTL 238 (499)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-----------------ccc-----ccCCHHHHHHHHHHHHHcCCE
Confidence 3468999999999999999999999999999820 001 113456778888888999999
Q ss_pred EEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ .+..+...++.+.+.. ++.++.+|.|++|+|.+|+...
T Consensus 239 i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 239 FLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 9998 5777876554455544 4566999999999999998764
No 175
>PTZ00058 glutathione reductase; Provisional
Probab=98.90 E-value=1.5e-08 Score=99.55 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=87.7
Q ss_pred ccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC
Q 016820 27 IVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD 106 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~ 106 (382)
++||+.+..+..........+...... . .+.+|+|||+|+.|+++|..|++.|.+|+++++. +
T Consensus 208 IATGS~P~~P~IpG~~~v~ts~~~~~l-~-~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~---------------~ 270 (561)
T PTZ00058 208 IAVGNKPIFPDVKGKEFTISSDDFFKI-K-EAKRIGIAGSGYIAVELINVVNRLGAESYIFARG---------------N 270 (561)
T ss_pred EecCCCCCCCCCCCceeEEEHHHHhhc-c-CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEec---------------c
Confidence 668887655443222111111111111 1 2579999999999999999999999999999931 0
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEEEEE-CC-eEEEcCEEEEccCCCCcCCC
Q 016820 107 VENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFKVFT-DS-KSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~v~~-~~-~~~~~d~lvlA~G~~~~~~~ 178 (382)
.+ .....+++.+.+.+.+++.|++++.+ ++.+++.+++ .+.+.. ++ .++.+|.|++|+|.+|+...
T Consensus 271 -----~i-l~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~ 340 (561)
T PTZ00058 271 -----RL-LRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED 340 (561)
T ss_pred -----cc-cccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence 00 01123677788888888999999998 6888886543 344432 33 46999999999999988653
No 176
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.90 E-value=1.6e-08 Score=84.79 Aligned_cols=120 Identities=28% Similarity=0.385 Sum_probs=69.9
Q ss_pred ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC--CCCCCcceecC----CCcc------cCCC--CCC---CC
Q 016820 55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN--DIAPGGQLTTT----SDVE------NFPG--FPQ---GI 117 (382)
Q Consensus 55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--~~~~gg~~~~~----~~~~------~~~~--~~~---~~ 117 (382)
+..++||+||||||+|++||+.|++.|++|.++|+...- ....||.+... .... ..+. ..+ -.
T Consensus 14 ~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~ 93 (230)
T PF01946_consen 14 DYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVA 93 (230)
T ss_dssp HHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES
T ss_pred hhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEE
Confidence 446799999999999999999999999999999963211 11222222110 0000 0000 000 13
Q ss_pred ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC-CcEE-EEE------------CCeEEEcCEEEEccCCCC
Q 016820 118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS-RPFK-VFT------------DSKSVLADTVIVATGAVA 174 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~-~~~~-v~~------------~~~~~~~d~lvlA~G~~~ 174 (382)
...++...+...+-+.|.++++. .|+++-..+ +++. +.. |--.++++.||=|||...
T Consensus 94 d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 94 DSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp -HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 55677777777777799999988 688875554 4322 111 334799999999999854
No 177
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.90 E-value=1.3e-08 Score=96.45 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=79.7
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCC----Ccceec-------------------------------C
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAP----GGQLTT-------------------------------T 104 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~----gg~~~~-------------------------------~ 104 (382)
||+|||||++|+++|..|++.|++|+|+|+........ +..... .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 79999999999999999999999999999753211110 000000 0
Q ss_pred CC---cccCCC-------CCCCCChHHHHHHHHHHHHHcC-cEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccC
Q 016820 105 SD---VENFPG-------FPQGILGGDLMDRCRNQSLRFG-TQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATG 171 (382)
Q Consensus 105 ~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g-i~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G 171 (382)
.. ...++. ....+...++.+.+.+.+.+.+ ++++.+ +|++++.+++.+.+... +.++.+|.||.|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG 160 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADG 160 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCC
Confidence 00 000100 0011345677788888888887 998888 79999888777777654 45699999999999
Q ss_pred CCCcC
Q 016820 172 AVAKK 176 (382)
Q Consensus 172 ~~~~~ 176 (382)
.++..
T Consensus 161 ~~S~v 165 (385)
T TIGR01988 161 ANSKV 165 (385)
T ss_pred CCCHH
Confidence 87643
No 178
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.90 E-value=2.8e-08 Score=96.50 Aligned_cols=130 Identities=18% Similarity=0.077 Sum_probs=87.9
Q ss_pred ccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceec
Q 016820 27 IVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
+++|+.+..+..........+..... ....+.+++|||||+.|+++|..+..+ |.+|+|+++.
T Consensus 157 IATGs~p~~p~i~G~~~~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~------------- 222 (486)
T TIGR01423 157 LATGSWPQMLGIPGIEHCISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN------------- 222 (486)
T ss_pred EecCCCCCCCCCCChhheechhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC-------------
Confidence 56888765443332221122221111 223457899999999999999877665 9999999931
Q ss_pred CCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-EEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820 104 TSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-FKVFT-DSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
+.+ .....+++.+.+.+.+++.|++++.+ .+.+++.+++. ..+.. ++.++.+|.+++|+|.+|+...
T Consensus 223 -------~~i-l~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 223 -------NMI-LRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred -------Ccc-ccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence 000 01134678888888899999999998 68888765332 34443 4567999999999999998753
No 179
>PRK06126 hypothetical protein; Provisional
Probab=98.90 E-value=2.8e-08 Score=98.64 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=78.8
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc---------------------------------ee
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ---------------------------------LT 102 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~---------------------------------~~ 102 (382)
+..+||+|||||++|+++|..|++.|++|+|||+.........+. +.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 456899999999999999999999999999999743211111100 00
Q ss_pred c--CC-Cccc--CCC-------------------CCCCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEE
Q 016820 103 T--TS-DVEN--FPG-------------------FPQGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFT 156 (382)
Q Consensus 103 ~--~~-~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~ 156 (382)
. .. .... ++. ....+....+.+.+.+.+.+. +++++.+ ++++++.+++.+.+..
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~ 164 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATV 164 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEE
Confidence 0 00 0000 000 001223345666777777654 7999988 7999988777655432
Q ss_pred ----CC--eEEEcCEEEEccCCCCcCC
Q 016820 157 ----DS--KSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 157 ----~~--~~~~~d~lvlA~G~~~~~~ 177 (382)
++ .++++|+||.|+|.++..-
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~VR 191 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSAVR 191 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchHHH
Confidence 23 2589999999999987544
No 180
>PRK06185 hypothetical protein; Provisional
Probab=98.90 E-value=2.4e-08 Score=95.43 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=78.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC-CCCCccee--------------c----------------C
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND-IAPGGQLT--------------T----------------T 104 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~-~~~gg~~~--------------~----------------~ 104 (382)
...+||+|||||++|+++|..|++.|++|+|||+..... ...+..+. . .
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 456899999999999999999999999999999743211 11111100 0 0
Q ss_pred CC-c--ccCCCC----C--CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcE---EEEE-CC-eEEEcCEEEE
Q 016820 105 SD-V--ENFPGF----P--QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPF---KVFT-DS-KSVLADTVIV 168 (382)
Q Consensus 105 ~~-~--~~~~~~----~--~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~---~v~~-~~-~~~~~d~lvl 168 (382)
.. . ..+... + ..+...++.+.+.+.+.+. +++++.+ ++.++..+++.+ .+.. ++ .++++|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~ 163 (407)
T PRK06185 84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVG 163 (407)
T ss_pred CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEE
Confidence 00 0 000000 0 1123456777777777664 8999888 788887766654 3333 33 3699999999
Q ss_pred ccCCCCcC
Q 016820 169 ATGAVAKK 176 (382)
Q Consensus 169 A~G~~~~~ 176 (382)
|+|..+..
T Consensus 164 AdG~~S~v 171 (407)
T PRK06185 164 ADGRHSRV 171 (407)
T ss_pred CCCCchHH
Confidence 99997643
No 181
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.90 E-value=1.7e-08 Score=96.18 Aligned_cols=118 Identities=22% Similarity=0.225 Sum_probs=79.5
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC----------------------C-Cc-------
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT----------------------S-DV------- 107 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~----------------------~-~~------- 107 (382)
+.||+|||||++|+++|..|++.|++|+|+|+...... .|..+... . ..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~-~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE-IGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccccc-ccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 47999999999999999999999999999997432211 11100000 0 00
Q ss_pred ----ccCC---------CCCC-CCChHHHHHHHHHHHHHcC-cEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEcc
Q 016820 108 ----ENFP---------GFPQ-GILGGDLMDRCRNQSLRFG-TQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVAT 170 (382)
Q Consensus 108 ----~~~~---------~~~~-~~~~~~~~~~~~~~~~~~g-i~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~ 170 (382)
..++ +.+. .+...++.+.+.+.+.+.+ ++++.+ ++++++.+++.+.+... +.++.+|.||.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad 162 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCD 162 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECC
Confidence 0000 0000 1345566777777776664 888888 78999877777777654 4569999999999
Q ss_pred CCCCcC
Q 016820 171 GAVAKK 176 (382)
Q Consensus 171 G~~~~~ 176 (382)
|.++..
T Consensus 163 G~~S~~ 168 (396)
T PRK08163 163 GVKSVV 168 (396)
T ss_pred CcChHH
Confidence 997654
No 182
>PRK11445 putative oxidoreductase; Provisional
Probab=98.89 E-value=3e-08 Score=92.74 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=77.0
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC-----CCCCCcceec-----------C---CCcc----------c
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN-----DIAPGGQLTT-----------T---SDVE----------N 109 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~-----~~~~gg~~~~-----------~---~~~~----------~ 109 (382)
+||+||||||||+++|..|++. ++|+|+|+.... ...+|+.+.. . .... .
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~ 80 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID 80 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence 7999999999999999999999 999999975321 1123332110 0 0000 0
Q ss_pred CC-------CCC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--CCe--EEEcCEEEEccCCCCcC
Q 016820 110 FP-------GFP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--DSK--SVLADTVIVATGAVAKK 176 (382)
Q Consensus 110 ~~-------~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lvlA~G~~~~~ 176 (382)
+. +.+ ..+.+.++.+.+.+. .+.+++++.+ .+..+..+++.+.+.. ++. ++++|+||.|+|..+..
T Consensus 81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 81 LANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred ccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence 00 001 124556666666653 4568998888 6888887777776653 332 58999999999997654
Q ss_pred C
Q 016820 177 L 177 (382)
Q Consensus 177 ~ 177 (382)
.
T Consensus 160 r 160 (351)
T PRK11445 160 R 160 (351)
T ss_pred h
Confidence 3
No 183
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.89 E-value=1.7e-08 Score=96.37 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=76.9
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC-C--CCCCc---cee-----------cCCCc-------------
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN-D--IAPGG---QLT-----------TTSDV------------- 107 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~-~--~~~gg---~~~-----------~~~~~------------- 107 (382)
.+||+|||||++|+++|..|++.|++|+|+|+.... . ...+. .+. .....
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 579999999999999999999999999999974111 0 00000 000 00000
Q ss_pred --------ccCCC----CC---CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEc
Q 016820 108 --------ENFPG----FP---QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVA 169 (382)
Q Consensus 108 --------~~~~~----~~---~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA 169 (382)
..+.. .+ ..+....+.+.+.+.+.+. +++++.+ +|++++.+++.+.+..+ +.++++|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgA 163 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGA 163 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEe
Confidence 00000 00 0112344555666666554 7998888 79999877777777654 457999999999
Q ss_pred cCCCCcCC
Q 016820 170 TGAVAKKL 177 (382)
Q Consensus 170 ~G~~~~~~ 177 (382)
.|..+..-
T Consensus 164 DG~~S~vR 171 (405)
T PRK08850 164 DGANSWLR 171 (405)
T ss_pred CCCCChhH
Confidence 99976544
No 184
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.89 E-value=3.1e-08 Score=98.00 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=81.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCc------------------------------ceecCCC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG------------------------------QLTTTSD 106 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg------------------------------~~~~~~~ 106 (382)
..+||+|||||++|+++|..|++.|++|+|||+.........+ .+.....
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 4589999999999999999999999999999974321110000 0000000
Q ss_pred --cccCC-------CCC--CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC---C--eEEEcCEEEE
Q 016820 107 --VENFP-------GFP--QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD---S--KSVLADTVIV 168 (382)
Q Consensus 107 --~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~---~--~~~~~d~lvl 168 (382)
...+. +++ ..+...++.+.+.+.+.+. +++++.+ ++++++.+++.+++... + .++++|+||.
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVg 168 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVG 168 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEe
Confidence 00011 111 1233456667777777665 8999988 79999888887776552 3 3699999999
Q ss_pred ccCCCCcCC
Q 016820 169 ATGAVAKKL 177 (382)
Q Consensus 169 A~G~~~~~~ 177 (382)
|.|.++..-
T Consensus 169 ADG~~S~vR 177 (538)
T PRK06183 169 CDGANSFVR 177 (538)
T ss_pred cCCCchhHH
Confidence 999987553
No 185
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.89 E-value=2.2e-08 Score=94.91 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=75.8
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC-CCC---Ccc---ee-----------cCCCc------------
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND-IAP---GGQ---LT-----------TTSDV------------ 107 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~-~~~---gg~---~~-----------~~~~~------------ 107 (382)
.+||+|||||++|+++|..|++.|++|+|||+..... ... +.. +. .....
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 3799999999999999999999999999999643111 001 111 00 00000
Q ss_pred --------ccCCCCC-------CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEc
Q 016820 108 --------ENFPGFP-------QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVA 169 (382)
Q Consensus 108 --------~~~~~~~-------~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA 169 (382)
..++... ..+....+...+.+.+.+. +++++.+ ++++++.+++.+.+... +.++++|.||.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgA 162 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGA 162 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0000000 0011233444444444443 6888887 79999887777766664 457999999999
Q ss_pred cCCCCcCCC
Q 016820 170 TGAVAKKLQ 178 (382)
Q Consensus 170 ~G~~~~~~~ 178 (382)
+|.++..-.
T Consensus 163 DG~~S~vR~ 171 (384)
T PRK08849 163 DGANSQVRQ 171 (384)
T ss_pred cCCCchhHH
Confidence 999875543
No 186
>PRK07588 hypothetical protein; Provisional
Probab=98.88 E-value=2e-08 Score=95.53 Aligned_cols=118 Identities=20% Similarity=0.170 Sum_probs=76.6
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC------------------------------CCc-
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT------------------------------SDV- 107 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~------------------------------~~~- 107 (382)
+||+|||||++|+++|+.|++.|++|+|+|+...... .|..+... ...
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~ 79 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRT-GGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGR 79 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccC-CCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCC
Confidence 4799999999999999999999999999997432211 11100000 000
Q ss_pred --ccCC--CC------C-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCC
Q 016820 108 --ENFP--GF------P-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVA 174 (382)
Q Consensus 108 --~~~~--~~------~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~ 174 (382)
..++ .+ + ..+...++.+.+.+.+ ..+++++.+ +|++++.+++.+.+..+ +.++.+|.||.|.|.++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEEEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 0000 00 0 0123345555555543 337899888 79999888887777664 45689999999999987
Q ss_pred cCCC
Q 016820 175 KKLQ 178 (382)
Q Consensus 175 ~~~~ 178 (382)
..-.
T Consensus 159 ~vR~ 162 (391)
T PRK07588 159 HVRR 162 (391)
T ss_pred cchh
Confidence 6543
No 187
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.87 E-value=3.4e-08 Score=93.89 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820 119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
...+.+.+.+.+.+.|++++.+ +|..++.+++.+.+.++++++.+|.||+|+|.++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCCEEEeCEEEECCCcch
Confidence 4566677777778889999888 7999988777777877777899999999999865
No 188
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.87 E-value=5.7e-09 Score=103.79 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCc--hHHHHHHHHhhcCCEEEEEEeCCCCc--------------------chHHHHHHhccCCCcEEEcC
Q 016820 204 RDKPLAVIGGGD--SAMEEANFLTKYGSKVYIIHRRDSFR--------------------ASKIMQNRALTNPKIDVIWN 261 (382)
Q Consensus 204 ~~~~v~VvG~G~--~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------~~~~~~~~~l~~~gv~~~~~ 261 (382)
..+++.|+|++. .+.+++..+...+.+++++.+...+. ....+ .+.+++.|++++.+
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L-~~~~~~~Gv~i~~~ 234 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARL-AKSALDLGIPILTG 234 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHH-HHHHHhCCCEEEeC
Confidence 357788999988 78899998888877766543322111 11222 23456789999999
Q ss_pred ceeEEEEecCCceeeeeEEEEeccCCceEEEecC-eEEEeeCCCC
Q 016820 262 SVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS-GLFFAIGHEP 305 (382)
Q Consensus 262 ~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D-~vi~~~G~~p 305 (382)
+.+.++..+++ .+.+|.+.+. +....+.++ .||+|+|.-+
T Consensus 235 ~~v~~l~~~~g--~V~GV~~~~~--~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 235 TPARELLTEGG--RVVGARVIDA--GGERRITARRGVVLACGGFS 275 (574)
T ss_pred CEEEEEEeeCC--EEEEEEEEcC--CceEEEEeCCEEEEcCCCcc
Confidence 99999987643 3666776541 223457786 7999998766
No 189
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.86 E-value=2.8e-08 Score=93.64 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=79.1
Q ss_pred cEEEECCcHHHHHHHHHH--HHcCCCeEEEecccCC---CCCCCcceecCCC------cccCC--------------CCC
Q 016820 60 KVCIIGSGPAAHTAAIYA--ARAELKPILFEGWMAN---DIAPGGQLTTTSD------VENFP--------------GFP 114 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l--~~~g~~v~lie~~~~~---~~~~gg~~~~~~~------~~~~~--------------~~~ 114 (382)
||+|||||+||+++|..| ++.|.+|+|||+.... .....+-+..... .+.++ .++
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999 7779999999964222 1111111110000 00110 111
Q ss_pred C-CCChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCc
Q 016820 115 Q-GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAK 175 (382)
Q Consensus 115 ~-~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~ 175 (382)
. .+....+.+++.+.+...++.++...|.+|+..++.+.+.+ ++.+++++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 1 35678888888888886677777778999998887665555 4457999999999996554
No 190
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.85 E-value=5.9e-08 Score=96.70 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=40.9
Q ss_pred CCceeeCCCCCcCCCCceEEecccCCchh-------hHHHHHHhhHHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQDKKY-------RQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~~-------~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
.|.+.+|. ..+|+.|++||+|+|++... .....+...|+.|+.++++++.+
T Consensus 370 ~gG~~~d~-~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~ 427 (603)
T TIGR01811 370 MGGLWVDY-DQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNYLG 427 (603)
T ss_pred CCCeeECC-CCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48899998 77899999999999964221 35668889999999999887643
No 191
>PRK07045 putative monooxygenase; Reviewed
Probab=98.85 E-value=5.9e-08 Score=92.16 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=77.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee-----------------------------c--CC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT-----------------------------T--TS 105 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~-----------------------------~--~~ 105 (382)
..+||+|||||++|+++|..|++.|++|+|+|+........++... . ..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 4579999999999999999999999999999975322211111000 0 00
Q ss_pred Cc---ccCCCCC-C----CCChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEecCCc--EEEEE-CCeEEEcCEEEEccCC
Q 016820 106 DV---ENFPGFP-Q----GILGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFKSRP--FKVFT-DSKSVLADTVIVATGA 172 (382)
Q Consensus 106 ~~---~~~~~~~-~----~~~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~~~~--~~v~~-~~~~~~~d~lvlA~G~ 172 (382)
.. ..+.... . .+...++.+.+.+.+.+ .+++++.+ +++++..+++. +.+.. ++.++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~ 163 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA 163 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence 00 0010000 0 12344566666666644 47999888 78888876544 24544 4457999999999999
Q ss_pred CCcCC
Q 016820 173 VAKKL 177 (382)
Q Consensus 173 ~~~~~ 177 (382)
++..-
T Consensus 164 ~S~vR 168 (388)
T PRK07045 164 RSMIR 168 (388)
T ss_pred ChHHH
Confidence 76443
No 192
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.85 E-value=3.7e-08 Score=95.23 Aligned_cols=100 Identities=22% Similarity=0.209 Sum_probs=75.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+.+++|||+|+.|+++|..|++.|.+|+++++. .. + .....+++.+.+.+.. +.+++
T Consensus 168 ~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~----~~-------------l----l~~~d~~~~~~l~~~~-~~gI~ 225 (452)
T TIGR03452 168 LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRS----TK-------------L----LRHLDEDISDRFTEIA-KKKWD 225 (452)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc----Cc-------------c----ccccCHHHHHHHHHHH-hcCCE
Confidence 4579999999999999999999999999999941 00 0 0112345666666544 45899
Q ss_pred EEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++..++.+++.+.+.. ++.++.+|.|++|+|.+|+...
T Consensus 226 i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 226 IRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 9988 7899987666665554 3456999999999999998754
No 193
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.84 E-value=4.7e-08 Score=92.54 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820 119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
...+...+.+.+.+.|++++.+ +|.++..+++.+.+.++++++.+|+||+|+|.+.
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCCEEEeCEEEEecCcch
Confidence 3466677777778889999888 6999988777787877777899999999999863
No 194
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.84 E-value=4.2e-08 Score=92.72 Aligned_cols=100 Identities=15% Similarity=0.260 Sum_probs=78.2
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
.++++|||||+.|+++|..|.+.|.+|+++++. .. +......+++.+.+++.+++.|+++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~----~~----------------~l~~~~~~~~~~~l~~~l~~~gV~i 200 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNA----AS----------------LLASLMPPEVSSRLQHRLTEMGVHL 200 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecC----Cc----------------ccchhCCHHHHHHHHHHHHhCCCEE
Confidence 468999999999999999999999999999941 00 0011123567778888888999999
Q ss_pred EEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820 138 FTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 138 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~ 177 (382)
+.+ .+.+++.+++.+.+.. ++.++.+|.||+|+|.+|+..
T Consensus 201 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~ 242 (377)
T PRK04965 201 LLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTA 242 (377)
T ss_pred EECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchH
Confidence 987 7889987766666554 455799999999999998653
No 195
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.84 E-value=4.4e-08 Score=94.74 Aligned_cols=100 Identities=21% Similarity=0.183 Sum_probs=79.2
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
..+|+|||||++|+++|..|++.|.+|+++++. . .+ ++ ....+++.+.+.+.+++.|+++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~----~----~~--------l~----~~~~~~~~~~l~~~l~~~gI~v 208 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLE----D----RI--------LP----DSFDKEITDVMEEELRENGVEL 208 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCC----c----cc--------Cc----hhcCHHHHHHHHHHHHHCCCEE
Confidence 478999999999999999999999999999931 0 00 00 1124678888889999999999
Q ss_pred EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820 138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~ 177 (382)
+.+ ++.+++.+++...+.++++++.+|.+|+|+|.+|+..
T Consensus 209 ~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~ 249 (444)
T PRK09564 209 HLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTE 249 (444)
T ss_pred EcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHH
Confidence 988 6888876554445566777899999999999998754
No 196
>PRK06753 hypothetical protein; Provisional
Probab=98.84 E-value=4.5e-08 Score=92.43 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=74.5
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec-------------------------------CCC-
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT-------------------------------TSD- 106 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~-------------------------------~~~- 106 (382)
++|+|||||++|+++|+.|++.|++|+|+|+....... |..+.. ...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~-g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~ 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEV-GAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccccc-ccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC
Confidence 37999999999999999999999999999974322111 110000 000
Q ss_pred c-ccCC----CCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcC
Q 016820 107 V-ENFP----GFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 107 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~ 176 (382)
. ...+ .....+....+.+.+.+.+. +.+++.+ ++++++.+++.+.+..+ +.++.+|.||.|.|.++..
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence 0 0000 00012344566666655544 3567777 79999888777777664 4569999999999987644
No 197
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.83 E-value=7.3e-08 Score=95.61 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=79.3
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc---------------------------e-----ec
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ---------------------------L-----TT 103 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~---------------------------~-----~~ 103 (382)
+..+||+|||||++|+++|..|++.|++|+|||+..... .++. + ..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~--~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 98 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS--TGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFL 98 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC--CCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEe
Confidence 356899999999999999999999999999999743211 1110 0 00
Q ss_pred C-CCcccCC-------CCCC--CCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEE---CCe-EEEcCEEE
Q 016820 104 T-SDVENFP-------GFPQ--GILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFT---DSK-SVLADTVI 167 (382)
Q Consensus 104 ~-~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~---~~~-~~~~d~lv 167 (382)
. .....+. .++. .+...++.+.+.+.+.+. +++++.+ ++++++.+++.+.+.. ++. ++++|+||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vV 178 (547)
T PRK08132 99 RDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVI 178 (547)
T ss_pred CCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEE
Confidence 0 0000000 0010 123456667777777765 6899888 7989988777665543 232 58999999
Q ss_pred EccCCCCcCC
Q 016820 168 VATGAVAKKL 177 (382)
Q Consensus 168 lA~G~~~~~~ 177 (382)
.|.|.++..-
T Consensus 179 gADG~~S~vR 188 (547)
T PRK08132 179 ACDGARSPLR 188 (547)
T ss_pred ECCCCCcHHH
Confidence 9999987543
No 198
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.82 E-value=3.4e-07 Score=90.95 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=35.9
Q ss_pred CCcCCCCceEEecccCCc-hhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820 328 TTHTSVPGVFAAGDVQDK-KYRQAVTAAGTGCMAALEAEHYLQEI 371 (382)
Q Consensus 328 ~~~t~~~~vya~GD~~~~-~~~~~~~a~~~g~~aa~~i~~~l~~~ 371 (382)
..+|+.|++||+|||+.. ..+++..+..+|..++.++++++...
T Consensus 401 ~~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~~ 445 (614)
T TIGR02061 401 NRMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILDH 445 (614)
T ss_pred CCccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHhC
Confidence 457899999999999752 35677788888999999999988643
No 199
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.82 E-value=8.4e-08 Score=93.06 Aligned_cols=118 Identities=24% Similarity=0.332 Sum_probs=78.4
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC---CCCcceec--CCC---------------------------
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI---APGGQLTT--TSD--------------------------- 106 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~---~~gg~~~~--~~~--------------------------- 106 (382)
+||+|||+|.||+.||..+++.|.+|+|+||...... ..||.... ..+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 7999999999999999999999999999997422110 00110000 000
Q ss_pred -------c-----ccCC------C--CC-----CCCChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcE-EEEECCeE
Q 016820 107 -------V-----ENFP------G--FP-----QGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPF-KVFTDSKS 160 (382)
Q Consensus 107 -------~-----~~~~------~--~~-----~~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~-~v~~~~~~ 160 (382)
+ ..|. + ++ .......+.+.+.+.+.+.|++++.+.++.+..+++.+ .+..++..
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g~~ 161 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDGEL 161 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECCEE
Confidence 0 0000 0 11 01245678888888888999999877777776555444 34456667
Q ss_pred EEcCEEEEccCCCCcC
Q 016820 161 VLADTVIVATGAVAKK 176 (382)
Q Consensus 161 ~~~d~lvlA~G~~~~~ 176 (382)
+.++.||+|||..+..
T Consensus 162 i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 162 LKFDATVIATGGFSGL 177 (466)
T ss_pred EEeCeEEECCCcCcCC
Confidence 9999999999996543
No 200
>PRK06996 hypothetical protein; Provisional
Probab=98.82 E-value=4.6e-08 Score=93.16 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=79.4
Q ss_pred ccccccEEEECCcHHHHHHHHHHHHcC----CCeEEEecccCCCCCCC--c-c--------------ee----------c
Q 016820 55 QTLKTKVCIIGSGPAAHTAAIYAARAE----LKPILFEGWMANDIAPG--G-Q--------------LT----------T 103 (382)
Q Consensus 55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g----~~v~lie~~~~~~~~~g--g-~--------------~~----------~ 103 (382)
....+||+|||||++|+++|..|++.| .+|+|+|+......... + . |. .
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~ 87 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV 87 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence 345689999999999999999999987 47999997421111100 0 0 00 0
Q ss_pred C--CCc-------cc--CCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC----eEEEcCEEE
Q 016820 104 T--SDV-------EN--FPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS----KSVLADTVI 167 (382)
Q Consensus 104 ~--~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~----~~~~~d~lv 167 (382)
. ... .. .+.....+...++.+.|.+.+.+.+++++.+ ++++++.+.+.+++...+ .++++|+||
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvI 167 (398)
T PRK06996 88 SQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAV 167 (398)
T ss_pred ecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEE
Confidence 0 000 00 0000012345678888888888889999888 688888777778776542 479999999
Q ss_pred EccCC
Q 016820 168 VATGA 172 (382)
Q Consensus 168 lA~G~ 172 (382)
.|.|.
T Consensus 168 gADG~ 172 (398)
T PRK06996 168 QAEGG 172 (398)
T ss_pred ECCCC
Confidence 99995
No 201
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.81 E-value=6.6e-08 Score=91.38 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820 120 GDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 120 ~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
..+...+.+.+.+.|++++.+ +|+++..+++.+.+.++++.+.+|.||+|+|.+.
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCcch
Confidence 455555666677789999887 6999988777788888777899999999999864
No 202
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.81 E-value=5.6e-08 Score=97.01 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=75.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHH-HHcCc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQS-LRFGT 135 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi 135 (382)
.+.+|+|||||+.|+++|..|.+.|.+|+|||+. .. + ......++.+++.+.+ ++.||
T Consensus 311 lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~----~~-------------l----l~~~d~eis~~l~~~ll~~~GV 369 (659)
T PTZ00153 311 LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYS----PQ-------------L----LPLLDADVAKYFERVFLKSKPV 369 (659)
T ss_pred cCCceEEECCCHHHHHHHHHHHhCCCeEEEEecc----Cc-------------c----cccCCHHHHHHHHHHHhhcCCc
Confidence 4578999999999999999999999999999931 00 0 0113456777777754 57899
Q ss_pred EEEEe-eEEEEEecCCc--EEEEEC-------C---------eEEEcCEEEEccCCCCcCCC
Q 016820 136 QIFTE-TVSKVDFKSRP--FKVFTD-------S---------KSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~~~--~~v~~~-------~---------~~~~~d~lvlA~G~~~~~~~ 178 (382)
+++.+ .|..|+.+++. +.+... + .++.+|.|++|+|.+|+...
T Consensus 370 ~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 370 RVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 99999 68889765432 444321 1 26999999999999998764
No 203
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.81 E-value=9.1e-08 Score=92.83 Aligned_cols=55 Identities=27% Similarity=0.340 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820 119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
+..+...+.+.+.+.|++++.+ .|++++. ++.+.+.++++++.+|+||+|+|.+.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g~v~A~~VV~Atga~s 237 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDGQVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCcEEECCEEEEcccccc
Confidence 4455666777778889999888 6888875 44567777888899999999999863
No 204
>PLN02985 squalene monooxygenase
Probab=98.81 E-value=8.2e-08 Score=93.89 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=78.2
Q ss_pred ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCccee------------------------------c
Q 016820 55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLT------------------------------T 103 (382)
Q Consensus 55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~------------------------------~ 103 (382)
....+||+|||||++|+++|..|++.|++|+|+|+....... .|..+. .
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~ 119 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK 119 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE
Confidence 345689999999999999999999999999999974321111 110000 0
Q ss_pred CCC--cccCCC----CC-----CCCChHHHHHHHHHHHHHc-CcEEEEeeEEEEEecCCc---EEEEE-CCe--EEEcCE
Q 016820 104 TSD--VENFPG----FP-----QGILGGDLMDRCRNQSLRF-GTQIFTETVSKVDFKSRP---FKVFT-DSK--SVLADT 165 (382)
Q Consensus 104 ~~~--~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~-gi~~~~~~v~~i~~~~~~---~~v~~-~~~--~~~~d~ 165 (382)
... ...++. .+ ..+...++.+.+.+.+.+. ++++..++++++..+++. +++.. ++. ++.+|.
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdL 199 (514)
T PLN02985 120 DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPL 199 (514)
T ss_pred CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCE
Confidence 000 001110 00 1234567778888877766 699888888777655543 33332 233 367999
Q ss_pred EEEccCCCCcCC
Q 016820 166 VIVATGAVAKKL 177 (382)
Q Consensus 166 lvlA~G~~~~~~ 177 (382)
||.|.|..+...
T Consensus 200 VVgADG~~S~vR 211 (514)
T PLN02985 200 TVVCDGCYSNLR 211 (514)
T ss_pred EEECCCCchHHH
Confidence 999999977554
No 205
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.80 E-value=1e-07 Score=78.14 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=67.7
Q ss_pred EEECCcHHHHHHHHHHHHc-----CCCeEEEecccCCCCCCCcceecC----------C-CcccCCCC------------
Q 016820 62 CIIGSGPAAHTAAIYAARA-----ELKPILFEGWMANDIAPGGQLTTT----------S-DVENFPGF------------ 113 (382)
Q Consensus 62 vIIGaG~aGl~~A~~l~~~-----g~~v~lie~~~~~~~~~gg~~~~~----------~-~~~~~~~~------------ 113 (382)
+|||+|++|++++.+|.++ ..+|+|+|+... ..|+.+... . .+..++.-
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~---G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~ 77 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF---GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRAN 77 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc---cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhc
Confidence 5999999999999999988 589999996211 112221111 0 00001100
Q ss_pred ----------CCCCChHHHHHHHHHHHHH----c--C--cEEEEeeEEEEEecCCcEEEEE-CCeEEEcCEEEEccCC
Q 016820 114 ----------PQGILGGDLMDRCRNQSLR----F--G--TQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGA 172 (382)
Q Consensus 114 ----------~~~~~~~~~~~~~~~~~~~----~--g--i~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~ 172 (382)
..+..+..+-+|+++.+++ . + +.++..+|++|+..++.+.+.+ ++..+.+|+||+|+|.
T Consensus 78 ~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 78 GADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 1123334444555554433 2 4 4456668999999988877655 5567999999999995
No 206
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.79 E-value=5.6e-08 Score=92.46 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=76.0
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
.++++|||+|+.|+++|..|++.|.+|+|+|+. .. .......+++.+++.+.+++.|+++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~----~~----------------~l~~~~~~~~~~~l~~~l~~~GV~i 203 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELA----AT----------------VMGRNAPPPVQRYLLQRHQQAGVRI 203 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----Cc----------------chhhhcCHHHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999999999931 00 0001234567778888888999999
Q ss_pred EEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820 138 FTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 138 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~ 177 (382)
+.+ .+.+++. ++.+.+.+ ++.++.+|.||+|+|.+|+..
T Consensus 204 ~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~ 244 (396)
T PRK09754 204 LLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQ 244 (396)
T ss_pred EeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhH
Confidence 988 6888875 33444444 456799999999999998753
No 207
>PLN02661 Putative thiazole synthesis
Probab=98.78 E-value=1.2e-07 Score=86.50 Aligned_cols=118 Identities=21% Similarity=0.268 Sum_probs=69.8
Q ss_pred ccccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccCC--CCCCCcceecCC-------C-cccCCCCCC--------
Q 016820 55 QTLKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMAN--DIAPGGQLTTTS-------D-VENFPGFPQ-------- 115 (382)
Q Consensus 55 ~~~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~--~~~~gg~~~~~~-------~-~~~~~~~~~-------- 115 (382)
+..++||+|||||++|+.+|+.|++. |++|+|+|+.... +...|+...... . ...+ +.+.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeEl-GV~fd~~dgy~v 167 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEL-GVPYDEQENYVV 167 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHc-CCCcccCCCeeE
Confidence 34578999999999999999999986 8999999963211 111121111000 0 0000 1110
Q ss_pred CCChHHHHHHHHHHHH-HcCcEEEEe-eEEEEEecCCcE-EEEE---------CC------eEEEcCEEEEccCCC
Q 016820 116 GILGGDLMDRCRNQSL-RFGTQIFTE-TVSKVDFKSRPF-KVFT---------DS------KSVLADTVIVATGAV 173 (382)
Q Consensus 116 ~~~~~~~~~~~~~~~~-~~gi~~~~~-~v~~i~~~~~~~-~v~~---------~~------~~~~~d~lvlA~G~~ 173 (382)
.....++...+.+.+. +.+++++.+ .+.++..+++.+ -+.. +. ..+++++||+|||..
T Consensus 168 v~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 168 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred ecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 1122344455555444 468999888 677776655432 1110 11 258999999999954
No 208
>PLN02546 glutathione reductase
Probab=98.76 E-value=1.1e-07 Score=93.70 Aligned_cols=130 Identities=17% Similarity=0.102 Sum_probs=87.8
Q ss_pred ccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC
Q 016820 27 IVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD 106 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~ 106 (382)
+++|+.+..+................ ......+|+|||||+.|+++|..|.+.|.+|+|+++. . .
T Consensus 222 IATGs~p~~P~IpG~~~v~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~----~----~------ 286 (558)
T PLN02546 222 IAVGGRPFIPDIPGIEHAIDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQ----K----K------ 286 (558)
T ss_pred EeCCCCCCCCCCCChhhccCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEec----c----c------
Confidence 66888765443222211111111111 1124579999999999999999999999999999931 0 0
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec-CCcEEEEECCeEEE-cCEEEEccCCCCcCCC
Q 016820 107 VENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK-SRPFKVFTDSKSVL-ADTVIVATGAVAKKLQ 178 (382)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~-~~~~~v~~~~~~~~-~d~lvlA~G~~~~~~~ 178 (382)
-+ ....+++.+.+++.+++.||+++.+ .+..+... ++.+.+.++++++. +|.||+|+|.+|+...
T Consensus 287 --il-----~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~ 354 (558)
T PLN02546 287 --VL-----RGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKN 354 (558)
T ss_pred --cc-----cccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCc
Confidence 00 1134677788888889999999988 68888754 33355555555544 8999999999998753
No 209
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.76 E-value=3.4e-07 Score=90.38 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=39.9
Q ss_pred CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQ 369 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~ 369 (382)
.|.+.+|. ..+|+.||+||+|+|+. .. -.....+...|+.|+++++++..
T Consensus 353 ~GGi~vd~-~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~ 410 (536)
T PRK09077 353 CGGVMVDL-HGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLP 410 (536)
T ss_pred cCCeeECC-CCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 57899998 67899999999999863 21 13566788999999999988753
No 210
>PRK05868 hypothetical protein; Validated
Probab=98.75 E-value=9.6e-08 Score=90.04 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=73.8
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec------------------------------CCCcc
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT------------------------------TSDVE 108 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~------------------------------~~~~~ 108 (382)
+||+|||||++|+++|..|++.|++|+|||+..... ..|..+.. .....
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~-~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR-PGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 589999999999999999999999999999743221 11110000 00000
Q ss_pred ---cCCC---CCC-------CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCC
Q 016820 109 ---NFPG---FPQ-------GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAV 173 (382)
Q Consensus 109 ---~~~~---~~~-------~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~ 173 (382)
.... ... .+...++.+.+.+ ....+++++.+ ++++++.+++.+++.. ++.++++|.||-|.|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYG-ATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHH-hccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCC
Confidence 0000 000 0112344443333 22458889888 7999987777777765 44579999999999997
Q ss_pred CcCC
Q 016820 174 AKKL 177 (382)
Q Consensus 174 ~~~~ 177 (382)
+..-
T Consensus 160 S~vR 163 (372)
T PRK05868 160 SNVR 163 (372)
T ss_pred chHH
Confidence 6543
No 211
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.75 E-value=1.7e-07 Score=91.85 Aligned_cols=57 Identities=28% Similarity=0.369 Sum_probs=44.8
Q ss_pred CCceeeCCCCCcCCCCceEEecccCCch--------hhHHHHHHhhHHHHHHHHHHHHHHccCcc
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQDKK--------YRQAVTAAGTGCMAALEAEHYLQEIGSQE 375 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~--------~~~~~~a~~~g~~aa~~i~~~l~~~~~~~ 375 (382)
-|.+++|.....+..|++||+|+|++.. ......+...|+.|+.++++++..+...+
T Consensus 355 mGGi~~~~~~~~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~ 419 (562)
T COG1053 355 MGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSP 419 (562)
T ss_pred cCCEeecccccccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4778888424466799999999998522 23677899999999999999999877664
No 212
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.75 E-value=1.9e-07 Score=90.54 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHH----cC--cEEEEe-eEEEEEec-CCcEEEEECCeEEEcCEEEEccCCCC
Q 016820 118 LGGDLMDRCRNQSLR----FG--TQIFTE-TVSKVDFK-SRPFKVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~----~g--i~~~~~-~v~~i~~~-~~~~~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
+...+...+.+.+.+ .| ++++.+ +|++|+.+ ++.|.+.++.+++.+|+||+|+|.+.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGEIRARFVVVSACGYS 273 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCEEEeCEEEECcChhH
Confidence 445677778888888 77 778887 79999887 55678888888999999999999864
No 213
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.75 E-value=1.6e-07 Score=89.26 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=75.1
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC--CCCCcceecC------------------------------C
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND--IAPGGQLTTT------------------------------S 105 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~--~~~gg~~~~~------------------------------~ 105 (382)
.+||+|||||++|+++|+.|++.|++|+|+|+..... ...+.....+ .
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 4789999999999999999999999999999754210 1111110000 0
Q ss_pred Cc--ccCCCCC--C---CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEe-cCCcEEEEE--CCe--EEEcCEEEEccCC
Q 016820 106 DV--ENFPGFP--Q---GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDF-KSRPFKVFT--DSK--SVLADTVIVATGA 172 (382)
Q Consensus 106 ~~--~~~~~~~--~---~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~-~~~~~~v~~--~~~--~~~~d~lvlA~G~ 172 (382)
.. ..++... . .....++.+.+.+.+.+.|++++.+ ++++++. +++...+.. ++. ++++|+||.|.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~ 161 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGF 161 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCC
Confidence 00 0011000 0 0123455666666667789999888 6877765 444444433 342 5899999999999
Q ss_pred CCcCC
Q 016820 173 VAKKL 177 (382)
Q Consensus 173 ~~~~~ 177 (382)
++..-
T Consensus 162 ~S~vR 166 (392)
T PRK08243 162 HGVSR 166 (392)
T ss_pred CCchh
Confidence 77544
No 214
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.75 E-value=3.3e-08 Score=84.94 Aligned_cols=104 Identities=23% Similarity=0.227 Sum_probs=67.4
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc--------cC--------------------
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE--------NF-------------------- 110 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~--------~~-------------------- 110 (382)
.+|+|||+|++|++||+.|++.|.+|+|+| ++.-.||++....... +|
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~e----Kg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV 77 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFE----KGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLV 77 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEE----cCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCce
Confidence 479999999999999999999999999999 4445555543211000 00
Q ss_pred ---------------CCCCC------CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe--EEEcCEE
Q 016820 111 ---------------PGFPQ------GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK--SVLADTV 166 (382)
Q Consensus 111 ---------------~~~~~------~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~--~~~~d~l 166 (382)
+..+. ......+.+++ ....+++++ +|+.+...++.|++.++++ ...+|.|
T Consensus 78 ~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-----AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~v 152 (331)
T COG3380 78 DVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-----ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDV 152 (331)
T ss_pred eeccccccccccCCCCCCCCCCccccCcchHHHHHHH-----hccchhhhhhhhhhheecCCeeEEEecCCCcccccceE
Confidence 00000 00111122211 125566666 6899998899999998443 4889999
Q ss_pred EEccC
Q 016820 167 IVATG 171 (382)
Q Consensus 167 vlA~G 171 (382)
|+|.-
T Consensus 153 vla~P 157 (331)
T COG3380 153 VLAIP 157 (331)
T ss_pred EEecC
Confidence 99984
No 215
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.75 E-value=1.2e-07 Score=91.15 Aligned_cols=99 Identities=20% Similarity=0.180 Sum_probs=76.7
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
..+|+|||+|++|+++|..|++.|.+|+++++. ..+ .......++.+.+.+.+++.||++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~----~~~----------------~~~~~~~~~~~~~~~~l~~~gV~v 196 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRS----ERI----------------LNKLFDEEMNQIVEEELKKHEINL 196 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECC----ccc----------------CccccCHHHHHHHHHHHHHcCCEE
Confidence 478999999999999999999999999999941 000 001123567778888889999999
Q ss_pred EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820 138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~ 177 (382)
+.+ .+.+++.++. +.+..++.++.+|.||+|+|.+|+..
T Consensus 197 ~~~~~v~~i~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 197 RLNEEVDSIEGEER-VKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred EeCCEEEEEecCCC-EEEEcCCCEEEeCEEEECCCccCCHH
Confidence 988 7889986554 32334567799999999999998764
No 216
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.75 E-value=1.9e-06 Score=81.28 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=37.8
Q ss_pred CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCccccc
Q 016820 332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKS 378 (382)
Q Consensus 332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~~~ 378 (382)
..||+|.+|=..+. ..-..|..||..|+.|++..+.++++...+.
T Consensus 328 ~~~~lf~AGQi~G~--~GY~Eaaa~Gl~agina~~~~~~~~~~~~~~ 372 (433)
T TIGR00137 328 DRQTLFFAGQLTGV--EGYVASTAGGWLAGINAARLALGEPLLTLPA 372 (433)
T ss_pred CCCCEEECcccccc--hHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 57999999999874 3556899999999999999999987765553
No 217
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.73 E-value=1.8e-07 Score=89.18 Aligned_cols=118 Identities=17% Similarity=0.105 Sum_probs=77.6
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee-----------------------------cCC--Cc
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT-----------------------------TTS--DV 107 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~-----------------------------~~~--~~ 107 (382)
.+|+|||||++|+++|..|++.|++|+|+|+...... .|..+. ... ..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~-~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~ 81 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE-VGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKA 81 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc-CCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCc
Confidence 5899999999999999999999999999997432111 111000 000 00
Q ss_pred ---c--cC---C----CCCC-CCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEE---CC-eEEEcCEEEE
Q 016820 108 ---E--NF---P----GFPQ-GILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFT---DS-KSVLADTVIV 168 (382)
Q Consensus 108 ---~--~~---~----~~~~-~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~---~~-~~~~~d~lvl 168 (382)
. .+ . ..+. .+...++.+.|.+.+.+. +++++.+ ++++++.+++.+.+.. ++ .++.+|.||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIg 161 (400)
T PRK06475 82 RPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIA 161 (400)
T ss_pred ceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEE
Confidence 0 00 0 0000 124466777777766554 7898888 7889987777766553 33 4689999999
Q ss_pred ccCCCCcCC
Q 016820 169 ATGAVAKKL 177 (382)
Q Consensus 169 A~G~~~~~~ 177 (382)
|.|.++..-
T Consensus 162 ADG~~S~vR 170 (400)
T PRK06475 162 CDGVWSMLR 170 (400)
T ss_pred CCCccHhHH
Confidence 999976543
No 218
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.72 E-value=2e-07 Score=89.95 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC-Cc---EEEEECCe---EEEcCEEEEccCCCCc
Q 016820 119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS-RP---FKVFTDSK---SVLADTVIVATGAVAK 175 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~-~~---~~v~~~~~---~~~~d~lvlA~G~~~~ 175 (382)
..++.+.+.+.+++.|++++.+ .++++..++ +. +.+...++ .+.++.||+|+|....
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 4568888888899999999998 688887653 32 33443333 3789999999998543
No 219
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.72 E-value=3.6e-07 Score=89.58 Aligned_cols=118 Identities=25% Similarity=0.363 Sum_probs=75.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC---CCCcceecCC-C--------------------------
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI---APGGQLTTTS-D-------------------------- 106 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~---~~gg~~~~~~-~-------------------------- 106 (382)
.++||||||+|.+|+++|+.+++.|.+|+||||....+. ..+|.+.... .
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999999999996421110 0011000000 0
Q ss_pred -----------------c-----ccC-----C-C-------CCC--CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec
Q 016820 107 -----------------V-----ENF-----P-G-------FPQ--GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK 148 (382)
Q Consensus 107 -----------------~-----~~~-----~-~-------~~~--~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~ 148 (382)
+ ..+ + + .|. ......+.+.+.+.+++.|++++.+ .++++..+
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 219 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK 219 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence 0 000 0 0 000 0123457778888888899999988 68888765
Q ss_pred CCc---EEEEECC---eEEEcCEEEEccCCCC
Q 016820 149 SRP---FKVFTDS---KSVLADTVIVATGAVA 174 (382)
Q Consensus 149 ~~~---~~v~~~~---~~~~~d~lvlA~G~~~ 174 (382)
++. +.+...+ ..+.++.||+|+|...
T Consensus 220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 543 3343333 3588999999999743
No 220
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.71 E-value=1.1e-08 Score=97.99 Aligned_cols=109 Identities=28% Similarity=0.271 Sum_probs=30.7
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc-----------------------ccCCCCC--
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV-----------------------ENFPGFP-- 114 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~-----------------------~~~~~~~-- 114 (382)
||||||||++|++||+.+++.|.+|+||| +...+||........ ......+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE----~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~ 76 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIE----KGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQE 76 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-----SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST---------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEE----CCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccc
Confidence 79999999999999999999999999999 455666653321100 0000000
Q ss_pred --------CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc---EEEEEC--CeEEEcCEEEEccCC
Q 016820 115 --------QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP---FKVFTD--SKSVLADTVIVATGA 172 (382)
Q Consensus 115 --------~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~---~~v~~~--~~~~~~d~lvlA~G~ 172 (382)
.......+...+.+.+.+.|++++.+ .+.++..+++. +.+.+. ..+++++.+|-|||.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 77 DRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01233445556667777889999999 68888777643 333322 345999999999994
No 221
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.70 E-value=5.1e-07 Score=87.53 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=58.8
Q ss_pred CchHHHHHHHHhhcCCEEE--------EEEeCCCCcc-hHHHHHHhccCCCcEEEcCceeEEEEec--CCceeeeeEEEE
Q 016820 214 GDSAMEEANFLTKYGSKVY--------IIHRRDSFRA-SKIMQNRALTNPKIDVIWNSVVLEAYGE--GDKKVLGGLKVK 282 (382)
Q Consensus 214 G~~a~e~a~~l~~~g~~v~--------~~~~~~~~~~-~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~g~~~~~v~~~ 282 (382)
=.+|.|+..++.+.-+++. .+.+...+.. ...+ .+.+++.||+++++++++++..+ ++...+.++.+.
T Consensus 191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL-~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~ 269 (576)
T PRK13977 191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPL-IKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLT 269 (576)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHH-HHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEE
Confidence 3579999988876522221 1122222222 2333 46788899999999999999985 222568888886
Q ss_pred eccCCce-EEEecCeEEEeeCCCCChh
Q 016820 283 NLVTGQV-SDLKVSGLFFAIGHEPATK 308 (382)
Q Consensus 283 ~~~~~~~-~~~~~D~vi~~~G~~p~~~ 308 (382)
....+.. ...+.|.||+++|.-....
T Consensus 270 ~~~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 270 RNGKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred eCCceeEEEecCCCEEEEeCCcCcccc
Confidence 4211212 2346899999998865443
No 222
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.70 E-value=2.6e-07 Score=89.81 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=76.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.+++++|||+|+.|+++|..|++.|.+|+++++. ... ......++.+.+++.+++. ++
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~----~~~-----------------l~~~d~~~~~~~~~~l~~~-I~ 225 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERG----DRI-----------------LPLEDPEVSKQAQKILSKE-FK 225 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC----CCc-----------------CcchhHHHHHHHHHHHhhc-cE
Confidence 4579999999999999999999999999999941 000 0113467788888888888 99
Q ss_pred EEEe-eEEEEEecCC-cEEEEE---CCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSR-PFKVFT---DSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~-~~~v~~---~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+ ++.+++.+++ .+.+.. ++.++.+|.+++|+|.+|+...
T Consensus 226 i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 226 IKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 9988 7888876554 344422 2245999999999999998764
No 223
>PRK07538 hypothetical protein; Provisional
Probab=98.70 E-value=2e-07 Score=89.23 Aligned_cols=117 Identities=24% Similarity=0.262 Sum_probs=74.0
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC-----------------------CCcc-------
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT-----------------------SDVE------- 108 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~-----------------------~~~~------- 108 (382)
+||+|||||++|+++|..|++.|++|+|||+...... .|..+... ....
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~ 79 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRP-LGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQ 79 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccc-cCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCC
Confidence 4899999999999999999999999999997432211 11111000 0000
Q ss_pred ---cCC-----CC--C-CCCChHHHHHHHHHHHHH-cC-cEEEEe-eEEEEEecCCcEEEEE-C-----CeEEEcCEEEE
Q 016820 109 ---NFP-----GF--P-QGILGGDLMDRCRNQSLR-FG-TQIFTE-TVSKVDFKSRPFKVFT-D-----SKSVLADTVIV 168 (382)
Q Consensus 109 ---~~~-----~~--~-~~~~~~~~~~~~~~~~~~-~g-i~~~~~-~v~~i~~~~~~~~v~~-~-----~~~~~~d~lvl 168 (382)
..+ ++ + ..+...++.+.|.+.+.+ .| ..++.+ +|++++.+++.+.+.. + ..++++|.||-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEE
Confidence 000 00 0 013456677777766654 46 457777 7889887666544332 1 13699999999
Q ss_pred ccCCCCcC
Q 016820 169 ATGAVAKK 176 (382)
Q Consensus 169 A~G~~~~~ 176 (382)
|.|.++..
T Consensus 160 ADG~~S~v 167 (413)
T PRK07538 160 ADGIHSAV 167 (413)
T ss_pred CCCCCHHH
Confidence 99997644
No 224
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.70 E-value=2.2e-07 Score=88.18 Aligned_cols=119 Identities=12% Similarity=0.080 Sum_probs=71.8
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC--CCCCcceecC---------------------CC--------
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND--IAPGGQLTTT---------------------SD-------- 106 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~--~~~gg~~~~~---------------------~~-------- 106 (382)
.+||+|||||++|+++|..|++.|++|+|||+..... ...+..+... ..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 4799999999999999999999999999999754210 0111111000 00
Q ss_pred -c--ccCCCCCC-----CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEe-cCC--cEEEEECCe--EEEcCEEEEccCC
Q 016820 107 -V--ENFPGFPQ-----GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDF-KSR--PFKVFTDSK--SVLADTVIVATGA 172 (382)
Q Consensus 107 -~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~-~~~--~~~v~~~~~--~~~~d~lvlA~G~ 172 (382)
. ..+..... ......+...+.+.+.+.++.++.+ +++.+.. +.+ .+++..++. ++++|.||-|.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCC
Confidence 0 00110000 0123455566666667778887777 5555532 333 344432443 5899999999999
Q ss_pred CCcC
Q 016820 173 VAKK 176 (382)
Q Consensus 173 ~~~~ 176 (382)
++..
T Consensus 162 ~S~V 165 (390)
T TIGR02360 162 HGVS 165 (390)
T ss_pred chhh
Confidence 7644
No 225
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.69 E-value=4.4e-07 Score=86.86 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--CC----eEEEcCEEEEccCCCC
Q 016820 119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--DS----KSVLADTVIVATGAVA 174 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~~----~~~~~d~lvlA~G~~~ 174 (382)
...+...+.+.+.+.|++++.+ +|++++.+++.+.+.+ .+ .++++|+||+|+|.+.
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 3455666777788889999988 7999987777665543 21 3689999999999864
No 226
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.69 E-value=1.6e-07 Score=90.46 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=76.9
Q ss_pred ccEEEECCcHHHHHHHHHHHH----cCCCeEEEecccCCCCC------CC----cc-----------------eec----
Q 016820 59 TKVCIIGSGPAAHTAAIYAAR----AELKPILFEGWMANDIA------PG----GQ-----------------LTT---- 103 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~----~g~~v~lie~~~~~~~~------~g----g~-----------------~~~---- 103 (382)
+||+|||||++|+++|..|++ .|++|+|||+....... .. .. +..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999999 79999999973211100 00 00 000
Q ss_pred -C----------CC---cccCCCC------CCCCChHHHHHHHHHHHHHcC---cEEEEe-eEEEEEec-------CCcE
Q 016820 104 -T----------SD---VENFPGF------PQGILGGDLMDRCRNQSLRFG---TQIFTE-TVSKVDFK-------SRPF 152 (382)
Q Consensus 104 -~----------~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~g---i~~~~~-~v~~i~~~-------~~~~ 152 (382)
. .. ...+... ...+....+.+.+.+.+.+.+ ++++.+ ++.+++.+ ++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 0 00 0000100 011344567777777777764 888888 78888642 3456
Q ss_pred EEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820 153 KVFT-DSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 153 ~v~~-~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
.+.. ++.++++|+||.|.|.++..-.
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S~vR~ 187 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNSNVRK 187 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCChhHH
Confidence 6655 4467999999999999875543
No 227
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=4.6e-08 Score=92.05 Aligned_cols=116 Identities=23% Similarity=0.220 Sum_probs=76.8
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEec------ccCCCCCCCcceec---------------CCCcccC------
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG------WMANDIAPGGQLTT---------------TSDVENF------ 110 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~------~~~~~~~~gg~~~~---------------~~~~~~~------ 110 (382)
.+||+|||||.||++||...+++|+++.|+.- .+.++..+||.-.. ..+...+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999999974 23444555543110 0000000
Q ss_pred ----C---CCCCCCChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCc--EEEEE-CCeEEEcCEEEEccCCC
Q 016820 111 ----P---GFPQGILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRP--FKVFT-DSKSVLADTVIVATGAV 173 (382)
Q Consensus 111 ----~---~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~--~~v~~-~~~~~~~d~lvlA~G~~ 173 (382)
| +.....+...+.+.+++.++. .++.++.+.|.++..+++. +-|.+ ++..+.++.||++||..
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 0 001122344555666666644 4899999999888775543 34444 45669999999999974
No 228
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.68 E-value=1.9e-07 Score=89.98 Aligned_cols=97 Identities=11% Similarity=0.083 Sum_probs=75.3
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
..+++|||||+.|+++|..|++.|.+|+|+++. .. + .....+++.+.+.+.+++.||++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~----~~-------------l----~~~~d~~~~~~l~~~l~~~gI~i 206 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRS----DK-------------I----NKLMDADMNQPILDELDKREIPY 206 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecc----cc-------------c----chhcCHHHHHHHHHHHHhcCCEE
Confidence 468999999999999999999999999999931 00 0 01134577788888889999999
Q ss_pred EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820 138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
+.+ ++.+++. ..+.+. ++..+.+|.|++|+|.+|+...
T Consensus 207 ~~~~~v~~i~~--~~v~~~-~g~~~~~D~vl~a~G~~pn~~~ 245 (438)
T PRK13512 207 RLNEEIDAING--NEVTFK-SGKVEHYDMIIEGVGTHPNSKF 245 (438)
T ss_pred EECCeEEEEeC--CEEEEC-CCCEEEeCEEEECcCCCcChHH
Confidence 988 6888863 233332 4567999999999999997653
No 229
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.67 E-value=1.7e-07 Score=96.51 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=76.4
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
..+++|||||+.|+++|..|+++|.+|+|+|.. +.+......++..+.+++.+++.||++
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~--------------------~~ll~~~ld~~~~~~l~~~L~~~GV~v 204 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFA--------------------PMLMAEQLDQMGGEQLRRKIESMGVRV 204 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecc--------------------ccchhhhcCHHHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999999999931 011011134567778888889999999
Q ss_pred EEe-eEEEEEecC--CcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820 138 FTE-TVSKVDFKS--RPFKVFT-DSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 138 ~~~-~v~~i~~~~--~~~~v~~-~~~~~~~d~lvlA~G~~~~~~ 177 (382)
+.+ .+.+|..++ ....+.. ++.++.+|.||+|+|.+|+..
T Consensus 205 ~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~ 248 (847)
T PRK14989 205 HTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDK 248 (847)
T ss_pred EcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCch
Confidence 998 688887543 2233333 556799999999999999864
No 230
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.65 E-value=7.7e-07 Score=79.07 Aligned_cols=162 Identities=18% Similarity=0.263 Sum_probs=106.0
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------ 242 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------ 242 (382)
...|+|||+|+.|+-+|..|.+.|.+|.++++...+..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 45799999999999999999999999999997764310
Q ss_pred --hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc------CCceEEEecCeEEEeeCCCCChh-hhcc-
Q 016820 243 --SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV------TGQVSDLKVSGLFFAIGHEPATK-FVDG- 312 (382)
Q Consensus 243 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~------~~~~~~~~~D~vi~~~G~~p~~~-~~~~- 312 (382)
...+. +...+.|++++.++.+.++..+++| .+.++.++... ..+...+.++.||.|+|...... .+..
T Consensus 105 ~l~~~L~-~~A~~~Gv~I~~~t~V~dl~~~~~g-~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~ 182 (257)
T PRK04176 105 EAAAKLA-AAAIDAGAKIFNGVSVEDVILREDP-RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARK 182 (257)
T ss_pred HHHHHHH-HHHHHcCCEEEcCceeceeeEeCCC-cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHH
Confidence 01111 2234579999999999998865543 25566654311 11346799999999999765432 1110
Q ss_pred ----cccc-------cCCC-ceeeCCCCCcCCCCceEEecccCC-----chhhHHHHHH-hhHHHHHHHHHHHHHH
Q 016820 313 ----QLDL-------HSDG-YIITKPGTTHTSVPGVFAAGDVQD-----KKYRQAVTAA-GTGCMAALEAEHYLQE 370 (382)
Q Consensus 313 ----~~~~-------~~~g-~i~vd~~~~~t~~~~vya~GD~~~-----~~~~~~~~a~-~~g~~aa~~i~~~l~~ 370 (382)
.... .+.| ...|+. +.+ -+|++|++|=++. +....+..+| -+|+.+|+.|.+.|..
T Consensus 183 ~~~~~~~~~g~~~~~~~~~e~~v~~~-t~~-~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 183 GPELGIEVPGEKSMWAERGEKLVVEN-TGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCcccccCCccccccCchHHHHHhc-CCe-EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 1100 0111 222222 233 3799999998763 2344455444 7999999999999874
No 231
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.64 E-value=4.8e-07 Score=85.20 Aligned_cols=53 Identities=23% Similarity=0.166 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820 118 LGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
+...+...+.+.+.+. |++++.+ +|.+|+.. .+.++++.+.+|+||+|+|.+.
T Consensus 143 ~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 143 EPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGDVHADQVFVCPGADF 197 (365)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCcEEeCEEEECCCCCh
Confidence 3455666676666654 9999887 68888643 4666667789999999999864
No 232
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.64 E-value=3.3e-07 Score=87.90 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcE---EEE--ECCe--EEEcCEEEEccCCCCc
Q 016820 118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPF---KVF--TDSK--SVLADTVIVATGAVAK 175 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~---~v~--~~~~--~~~~d~lvlA~G~~~~ 175 (382)
....+.+.+.+.+++++++++.+ .++++..+++++ .+. .++. +++++.||+|||....
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 45778899999999999999999 688888776653 233 2333 4889999999999654
No 233
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.63 E-value=6.3e-07 Score=87.24 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=74.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC----C-CCCCCcc-eecCCCc-------------------ccC-
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA----N-DIAPGGQ-LTTTSDV-------------------ENF- 110 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~----~-~~~~gg~-~~~~~~~-------------------~~~- 110 (382)
..+||||||+|.+|+++|+.+++.|.+|+||||... . ....+|. +...... ...
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 357999999999999999999999999999997431 0 0111110 0000000 000
Q ss_pred ----------------------CCCC------------CC-----CChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC
Q 016820 111 ----------------------PGFP------------QG-----ILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR 150 (382)
Q Consensus 111 ----------------------~~~~------------~~-----~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~ 150 (382)
.+.+ .. -....+...+.+.+++.|++++.+ +|+++..+++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g 162 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG 162 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence 0000 00 013467777888888899999988 7888876555
Q ss_pred cEE-EEEC-----CeEEEcCEEEEccCCC
Q 016820 151 PFK-VFTD-----SKSVLADTVIVATGAV 173 (382)
Q Consensus 151 ~~~-v~~~-----~~~~~~d~lvlA~G~~ 173 (382)
.+. +... ...+.++.||+|+|..
T Consensus 163 ~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 163 RFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred eEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 432 3221 2358899999999974
No 234
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=1.7e-07 Score=83.19 Aligned_cols=138 Identities=17% Similarity=0.086 Sum_probs=98.8
Q ss_pred ccceecccccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCC
Q 016820 19 TKARTFFGIVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPG 98 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g 98 (382)
-.++..+ +++|+.+..|..+...-...++....+ +.++++++|||||+.++++|--++.+|.++.|+=+.
T Consensus 152 Ytak~iL-IAtGg~p~~PnIpG~E~gidSDgff~L-ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~-------- 221 (478)
T KOG0405|consen 152 YTAKHIL-IATGGRPIIPNIPGAELGIDSDGFFDL-EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQ-------- 221 (478)
T ss_pred EecceEE-EEeCCccCCCCCCchhhccccccccch-hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEec--------
Confidence 3445555 669998887744444455555555444 457899999999999999999999999999998631
Q ss_pred cceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-EEEEECCeEE-EcCEEEEccCCCCc
Q 016820 99 GQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-FKVFTDSKSV-LADTVIVATGAVAK 175 (382)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~~v~~~~~~~-~~d~lvlA~G~~~~ 175 (382)
..+..-..+.+.+.+.+.+...||+++.. .++.+.+..+. ..+.+..+++ ..|.|+.|+|+.|+
T Consensus 222 -------------~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pn 288 (478)
T KOG0405|consen 222 -------------EKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPN 288 (478)
T ss_pred -------------chhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCC
Confidence 01122345677788888888899999988 57777665544 3333333444 49999999999998
Q ss_pred CCCC
Q 016820 176 KLQF 179 (382)
Q Consensus 176 ~~~~ 179 (382)
...+
T Consensus 289 tk~L 292 (478)
T KOG0405|consen 289 TKGL 292 (478)
T ss_pred cccc
Confidence 7643
No 235
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.61 E-value=4.6e-07 Score=86.85 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=72.2
Q ss_pred ccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcceecCC--------------------------------
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQLTTTS-------------------------------- 105 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~~~~~~-------------------------------- 105 (382)
.+|+|||||++|+++|..|+++| ++|+|+|+..... ..|..+....
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~-~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 79 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG-EVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFE 79 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC-CCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEE
Confidence 37999999999999999999998 6999999743221 1121110000
Q ss_pred ----CcccC------CCCC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCC
Q 016820 106 ----DVENF------PGFP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGA 172 (382)
Q Consensus 106 ----~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~ 172 (382)
....+ +.++ ..+.+.++.+.+.+.+. +..++.+ +|++++.+++.+.+.. ++.++.+|.||.|.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~ 157 (414)
T TIGR03219 80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGI 157 (414)
T ss_pred EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCc
Confidence 00000 0000 01334556666655443 3445556 7999988777787765 4456999999999999
Q ss_pred CCc
Q 016820 173 VAK 175 (382)
Q Consensus 173 ~~~ 175 (382)
++.
T Consensus 158 ~S~ 160 (414)
T TIGR03219 158 KSA 160 (414)
T ss_pred cHH
Confidence 764
No 236
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.61 E-value=1.8e-07 Score=92.60 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCCcEEEEcCCchHHHHHHH-------HhhcCCEEEEEEeCCCC--c----chHHHHHHhccCCCcEEEcCceeEEEEec
Q 016820 204 RDKPLAVIGGGDSAMEEANF-------LTKYGSKVYIIHRRDSF--R----ASKIMQNRALTNPKIDVIWNSVVLEAYGE 270 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~-------l~~~g~~v~~~~~~~~~--~----~~~~~~~~~l~~~gv~~~~~~~v~~i~~~ 270 (382)
.++..+++|++..+++++.. +.+.+.+|++....+.. . ....+ .+.+++.|+++++++.+.++..+
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L-~~~~~~~gv~v~~~t~v~~l~~~ 237 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGL-RIGLQRAGVPVLLNTPLTDLYVE 237 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHH-HHHHHcCCCEEEeCCEEEEEEEe
Confidence 35678899999999987754 44555555544333221 1 12222 35567789999999999999876
Q ss_pred CCceeeeeEEEEeccCCceEEEecC-eEEEee-CCCCChhh
Q 016820 271 GDKKVLGGLKVKNLVTGQVSDLKVS-GLFFAI-GHEPATKF 309 (382)
Q Consensus 271 ~~g~~~~~v~~~~~~~~~~~~~~~D-~vi~~~-G~~p~~~~ 309 (382)
+ + .+.+|.+.. .++...+.++ .||+|+ |+.+|..+
T Consensus 238 ~-g-~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 238 D-G-RVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred C-C-EEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHHH
Confidence 4 3 366676653 2445668885 688866 55555443
No 237
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.60 E-value=3.5e-07 Score=85.98 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=67.6
Q ss_pred cEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCc--ceecCC-Cc-------------ccCCC---------
Q 016820 60 KVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGG--QLTTTS-DV-------------ENFPG--------- 112 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg--~~~~~~-~~-------------~~~~~--------- 112 (382)
||+|||||+||+++|..|++. |++|.|+|+.. ..++ .|.... +. +.++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~----~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~ 76 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR----TIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYR 76 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC----CCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchh
Confidence 799999999999999999987 99999999632 2222 111000 00 00100
Q ss_pred ----CC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc
Q 016820 113 ----FP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175 (382)
Q Consensus 113 ----~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~ 175 (382)
.+ ..+...++.+.+.+.+.. + ++.+ +|..++ .+.+++ .++.+++++.||.|.|..+.
T Consensus 77 ~~l~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~~v~l-~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 77 RKLKTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--ADGVDL-APGTRINARSVIDCRGFKPS 139 (370)
T ss_pred hhcCCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CCEEEE-CCCCEEEeeEEEECCCCCCC
Confidence 00 123445666666554433 3 4444 788884 345666 57778999999999998754
No 238
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.60 E-value=4.1e-07 Score=89.17 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-----eEEEcCEEEEccCCCC
Q 016820 120 GDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-----KSVLADTVIVATGAVA 174 (382)
Q Consensus 120 ~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-----~~~~~d~lvlA~G~~~ 174 (382)
..+...+...+.+.|++++.. +|+++..+++.+.+.+.+ .++.++.||.|+|.+.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 344445556677889999988 788988777666665422 3599999999999864
No 239
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.59 E-value=4.9e-07 Score=86.44 Aligned_cols=99 Identities=26% Similarity=0.337 Sum_probs=78.7
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
..+++|||+|++|+++|..|++.|++|+++|. ...+++.+. . .++.+.+.+.++++|+++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~----~~~~~~~~~---------------~-~~~~~~~~~~l~~~gi~~ 195 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEA----ADRLGGQLL---------------D-PEVAEELAELLEKYGVEL 195 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEc----ccccchhhh---------------h-HHHHHHHHHHHHHCCcEE
Confidence 47999999999999999999999999999993 222222111 0 678889999999999999
Q ss_pred EEe-eEEEEEecCCcEE----EEECCeEEEcCEEEEccCCCCcC
Q 016820 138 FTE-TVSKVDFKSRPFK----VFTDSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 138 ~~~-~v~~i~~~~~~~~----v~~~~~~~~~d~lvlA~G~~~~~ 176 (382)
+.+ .+..|+...+... .......+++|.+++++|.+|+.
T Consensus 196 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~ 239 (415)
T COG0446 196 LLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNV 239 (415)
T ss_pred EeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccH
Confidence 888 6889987765432 34456679999999999999963
No 240
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.59 E-value=9.2e-07 Score=86.74 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=31.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
..+||+|||||..|+++|+.|++.|++|+|||+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk 37 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQ 37 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 458999999999999999999999999999997
No 241
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.58 E-value=1.1e-06 Score=82.44 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEEEEECCe-E-EEcCEEEEccCCCC
Q 016820 118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFKVFTDSK-S-VLADTVIVATGAVA 174 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~v~~~~~-~-~~~d~lvlA~G~~~ 174 (382)
...++...+.+.+.+.|..+..+ +|+.|..+++ .+.+.+..+ + ++++.||.|.|...
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 151 DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH
Confidence 45677788888888889999999 7999999888 455555443 3 99999999999854
No 242
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.58 E-value=4.3e-07 Score=93.42 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=76.0
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
..+++|||||+.|+++|..|++.|.+|+|++.. +.+......++....+++.+++.||++
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~--------------------~~ll~~~ld~~~~~~l~~~l~~~GV~v 199 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHA--------------------PGLMAKQLDQTAGRLLQRELEQKGLTF 199 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccC--------------------CchhhhhcCHHHHHHHHHHHHHcCCEE
Confidence 468999999999999999999999999999931 000001123556677788888999999
Q ss_pred EEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820 138 FTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 138 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~ 177 (382)
+.+ .++++..++....+.. ++.++.+|.||+|+|.+|+..
T Consensus 200 ~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 200 LLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence 999 5888875544333443 556799999999999999765
No 243
>PRK07121 hypothetical protein; Validated
Probab=98.58 E-value=1e-06 Score=86.21 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=32.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
..+||||||+|.||+++|+++++.|.+|+|+||.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~ 52 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERA 52 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4689999999999999999999999999999974
No 244
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.58 E-value=1.1e-06 Score=86.73 Aligned_cols=118 Identities=20% Similarity=0.198 Sum_probs=76.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC---CCC-CcceecC--C-------------------------
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND---IAP-GGQLTTT--S------------------------- 105 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~---~~~-gg~~~~~--~------------------------- 105 (382)
...||+|||+|.||+.||.++++.|.+|+|+||..... ... |+..... .
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 56899999999999999999999999999999742110 000 1100000 0
Q ss_pred --------------CcccCC-------------CCC--------CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC
Q 016820 106 --------------DVENFP-------------GFP--------QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS 149 (382)
Q Consensus 106 --------------~~~~~~-------------~~~--------~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~ 149 (382)
.-..|. +.. ....+.++.+.|.+.+++.+++++.+ .+.++..++
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~ 174 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDG 174 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcC
Confidence 000000 000 01245678888888888899999888 688886654
Q ss_pred C-c---EEEE-----ECC--eEEEcCEEEEccCCCC
Q 016820 150 R-P---FKVF-----TDS--KSVLADTVIVATGAVA 174 (382)
Q Consensus 150 ~-~---~~v~-----~~~--~~~~~d~lvlA~G~~~ 174 (382)
+ . +.+. .++ ..+.++.||+|||...
T Consensus 175 ~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 175 TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 3 2 3333 122 3588999999999965
No 245
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.58 E-value=8.4e-07 Score=86.68 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEecCCcEE---EEECC--eEEEcCEEEEccCCCCc
Q 016820 118 LGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFKSRPFK---VFTDS--KSVLADTVIVATGAVAK 175 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~~~~~~---v~~~~--~~~~~d~lvlA~G~~~~ 175 (382)
+...+.+.+.+.+.+ .+|+++.+ .++++..+++.+. +...+ ..+.++.||+|||....
T Consensus 126 ~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 126 TGREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 456788888888877 69999998 6888876555432 22222 35899999999999654
No 246
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.58 E-value=3.2e-07 Score=85.45 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=73.7
Q ss_pred ccEEEECCcHHHHHHHHHHHHcC-------------CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHH
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAE-------------LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDR 125 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g-------------~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (382)
.+++|||||+.|+++|.+|+..- .+|+|||+. - .. .....+++.++
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~--------p------------~I-Lp~~~~~l~~~ 214 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAG--------P------------RI-LPMFPPKLSKY 214 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccC--------c------------hh-ccCCCHHHHHH
Confidence 47999999999999999998761 389999931 0 00 12345788999
Q ss_pred HHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820 126 CRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 126 ~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~ 177 (382)
.++.++++||+++.+ .|++++++ .+++...++++.++.+|.|+|.++...
T Consensus 215 a~~~L~~~GV~v~l~~~Vt~v~~~--~v~~~~g~~~I~~~tvvWaaGv~a~~~ 265 (405)
T COG1252 215 AERALEKLGVEVLLGTPVTEVTPD--GVTLKDGEEEIPADTVVWAAGVRASPL 265 (405)
T ss_pred HHHHHHHCCCEEEcCCceEEECCC--cEEEccCCeeEecCEEEEcCCCcCChh
Confidence 999999999999999 69999855 445543333599999999999987544
No 247
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.57 E-value=9.8e-07 Score=87.25 Aligned_cols=33 Identities=36% Similarity=0.365 Sum_probs=31.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
..+||+|||||..|+++|+.|++.|++|+|||+
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk 37 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVER 37 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEEC
Confidence 458999999999999999999999999999997
No 248
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.57 E-value=7.8e-07 Score=90.24 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeE-EEcCEEEEccCCCC
Q 016820 119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKS-VLADTVIVATGAVA 174 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~-~~~d~lvlA~G~~~ 174 (382)
...+...+.+.+.+ |++++.+ .|+++..+++.|.+.++++. +.+|.||+|+|...
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 34566666666667 8999887 69999887778888876665 67999999999864
No 249
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.56 E-value=1.4e-06 Score=77.28 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=105.8
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------c---------------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR---------A--------------------------------- 242 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~---------~--------------------------------- 242 (382)
.-.|+|||+|+.|+-+|..|.+.|.+|.++++...+. .
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 4579999999999999999999999999999876541 0
Q ss_pred --hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc------CCceEEEecCeEEEeeCCCCCh-hhhcc-
Q 016820 243 --SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV------TGQVSDLKVSGLFFAIGHEPAT-KFVDG- 312 (382)
Q Consensus 243 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~------~~~~~~~~~D~vi~~~G~~p~~-~~~~~- 312 (382)
...+. +...+.|++++.++.+.++..++++..+.++.++... ..+...+.++.||.|||..... .++..
T Consensus 101 el~~~L~-~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 101 EFISTLA-SKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHH-HHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 01111 1234578999999999998876653236667664321 1134679999999999976543 33321
Q ss_pred -cccccC-----CCce--------eeCCCCCcCCCCceEEecccCC-----chhhHHHHHH-hhHHHHHHHHHHHH
Q 016820 313 -QLDLHS-----DGYI--------ITKPGTTHTSVPGVFAAGDVQD-----KKYRQAVTAA-GTGCMAALEAEHYL 368 (382)
Q Consensus 313 -~~~~~~-----~g~i--------~vd~~~~~t~~~~vya~GD~~~-----~~~~~~~~a~-~~g~~aa~~i~~~l 368 (382)
.+..+. -+.+ .|+. +.+ -+|++|++|=.+. +....+..+| -+|+.+|+.|.+.|
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~-t~~-~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHEN-TRE-VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhc-cCc-ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 111111 1111 1221 222 3799999998763 2344555544 78999999998876
No 250
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.56 E-value=4.9e-07 Score=87.13 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcE--EEEE-CCeEEEcCEEEEccCCCCcC
Q 016820 117 ILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPF--KVFT-DSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 117 ~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~--~v~~-~~~~~~~d~lvlA~G~~~~~ 176 (382)
+....+-++|.+.+.+.|++++.++|+++..+++.. .+.+ ++.++++|.+|=|+|.....
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred EeHHHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence 356788899999999999999999988887766553 4555 45669999999999987644
No 251
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.56 E-value=2e-06 Score=82.27 Aligned_cols=55 Identities=18% Similarity=0.046 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHcCcEEEEe-eEEEEEec-CCc-EEEEECCeEEEcCEEEEccCCCC
Q 016820 120 GDLMDRCRNQSLRFGTQIFTE-TVSKVDFK-SRP-FKVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 120 ~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~-~~~-~~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
..+...+.+.+.+.|++++.+ +|.+++.. ++. +.+.++++.+.+++||+|+|.+.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhh
Confidence 345555667778889999988 79999754 344 45777777899999999999854
No 252
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=1e-06 Score=87.73 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE----EEE-CCe--EEEcCEEEEccCCCCc
Q 016820 118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK----VFT-DSK--SVLADTVIVATGAVAK 175 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~----v~~-~~~--~~~~d~lvlA~G~~~~ 175 (382)
.+..+...+.+.+.+.||+++.+ .+.++..+++.+. +.. ++. .+.++.||+|||....
T Consensus 133 tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 133 TGHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred ChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 34677788888888889999888 6888765544322 122 222 4899999999999653
No 253
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.56 E-value=9e-07 Score=85.01 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=39.0
Q ss_pred CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQ 369 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~ 369 (382)
.|.+.||. ..+|..||+||+|.+++ .. -.....+...|+.|+++|+..+.
T Consensus 331 ~GGi~vd~-~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~~ 388 (433)
T PRK06175 331 MGGIKVDL-NSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEID 388 (433)
T ss_pred cCCEEECC-CccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 58889998 56689999999999863 11 22456788999999999987664
No 254
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.54 E-value=1.4e-06 Score=83.54 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcE-EEEECCeEEEcCEEEEccCCCC
Q 016820 119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPF-KVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
...+...+.+.+.+.|++++.+ +|++++.+++.+ .+.++++++.+|+||+|+|.+.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCcEEeCCEEEECCCcch
Confidence 3456666777778889999887 799998776654 4667777899999999999864
No 255
>PRK10262 thioredoxin reductase; Provisional
Probab=98.54 E-value=9.5e-07 Score=81.62 Aligned_cols=98 Identities=20% Similarity=0.216 Sum_probs=73.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||+|..|+++|..|++.+.+|+++++. +.++ ....+.+.+++.+++.+++
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~--------------------~~~~---~~~~~~~~~~~~l~~~gV~ 201 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR--------------------DGFR---AEKILIKRLMDKVENGNII 201 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEEC--------------------CccC---CCHHHHHHHHhhccCCCeE
Confidence 4579999999999999999999999999999941 0010 1134566777777888999
Q ss_pred EEEe-eEEEEEecCCc---EEEEEC-----CeEEEcCEEEEccCCCCcCC
Q 016820 137 IFTE-TVSKVDFKSRP---FKVFTD-----SKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~---~~v~~~-----~~~~~~d~lvlA~G~~~~~~ 177 (382)
++.+ .+.+++.++.. +++... ..++.+|.||+++|.+|+..
T Consensus 202 i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 202 LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence 9987 68888765432 333321 13599999999999998775
No 256
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.53 E-value=1.8e-06 Score=86.66 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=74.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccCCCCCCCcc-------------------------------eecC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMANDIAPGGQ-------------------------------LTTT 104 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~~~~~gg~-------------------------------~~~~ 104 (382)
.++||+||||||+||++|..|++. |++|.|||+..... ..|.- +...
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~-~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL-ELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC-CCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 368999999999999999999995 99999999743211 11100 0000
Q ss_pred C-----Cc------ccC----CCCCC-CCChHHHHHHHHHHHHHcC--cEEEEe-eEEEEEecC---CcEEEEE------
Q 016820 105 S-----DV------ENF----PGFPQ-GILGGDLMDRCRNQSLRFG--TQIFTE-TVSKVDFKS---RPFKVFT------ 156 (382)
Q Consensus 105 ~-----~~------~~~----~~~~~-~~~~~~~~~~~~~~~~~~g--i~~~~~-~v~~i~~~~---~~~~v~~------ 156 (382)
. .. ... ..++. .+....+.+.+.+.+.+.+ +.+..+ +++++..++ ..+++..
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 0 00 000 00111 1233456677777777765 466666 688887553 2354443
Q ss_pred -CC--eEEEcCEEEEccCCCCcCCC
Q 016820 157 -DS--KSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 157 -~~--~~~~~d~lvlA~G~~~~~~~ 178 (382)
++ .++++|+||-|.|.++.+-.
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR~ 214 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVRK 214 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHHH
Confidence 13 46999999999999875543
No 257
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.51 E-value=5.1e-07 Score=82.12 Aligned_cols=115 Identities=22% Similarity=0.325 Sum_probs=74.9
Q ss_pred cccccEEEECCcHHHHHHHHHHHHc------CCCeEEEecccCCCCCCCcceecCCCc---------c------------
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARA------ELKPILFEGWMANDIAPGGQLTTTSDV---------E------------ 108 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~------g~~v~lie~~~~~~~~~gg~~~~~~~~---------~------------ 108 (382)
...+||+|||||||||++|++|+++ .++|.++| +...+||+...-..+ .
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvE----Kaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVE----KAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTP 149 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEe----eccccCCceecceeeccchhhhhCcchhhcCCccccc
Confidence 3568999999999999999999887 58899999 455566543211000 0
Q ss_pred ---------------cCCCCCC-------CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-E-EEEEC------
Q 016820 109 ---------------NFPGFPQ-------GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-F-KVFTD------ 157 (382)
Q Consensus 109 ---------------~~~~~~~-------~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~-~v~~~------ 157 (382)
..|-.+. -+...++..++-+.++++|++++.+ .+.++-.+++. + -+.++
T Consensus 150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k 229 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISK 229 (621)
T ss_pred ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccC
Confidence 0010000 1245789999999999999999988 45555444332 1 22221
Q ss_pred ----------CeEEEcCEEEEccCCCC
Q 016820 158 ----------SKSVLADTVIVATGAVA 174 (382)
Q Consensus 158 ----------~~~~~~d~lvlA~G~~~ 174 (382)
+-.+.++.-|+|-|++.
T Consensus 230 ~G~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 230 DGAPKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred CCCccccccccceecceeEEEeccccc
Confidence 12477888888888764
No 258
>PLN02661 Putative thiazole synthesis
Probab=98.50 E-value=5.2e-06 Score=75.98 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=105.7
Q ss_pred CCCcEEEEcCCchHHHHHHHHhhc-CCEEEEEEeCCCCcc----------------------------------------
Q 016820 204 RDKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDSFRA---------------------------------------- 242 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~l~~~-g~~v~~~~~~~~~~~---------------------------------------- 242 (382)
..-.|+|||+|..|+-+|..|.+. +.+|+++++...+..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h 170 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH 170 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence 345899999999999999999975 789999998654310
Q ss_pred ----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc------C---CceEEEecCeEEEeeCCCCChhh
Q 016820 243 ----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV------T---GQVSDLKVSGLFFAIGHEPATKF 309 (382)
Q Consensus 243 ----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~------~---~~~~~~~~D~vi~~~G~~p~~~~ 309 (382)
...+.++.+++.|++++.+..+.++..+++ .+.++.++... . .+...+.++.||++||..+....
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~g--rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga 248 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGD--RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA 248 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCC--EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchh
Confidence 011223344567899999999999887653 36667653211 1 12346899999999997653211
Q ss_pred h--c--ccccccC----CCc--------eeeCCCCCcCCCCceEEecccCC-----chhhHHHHHH-hhHHHHHHHHHHH
Q 016820 310 V--D--GQLDLHS----DGY--------IITKPGTTHTSVPGVFAAGDVQD-----KKYRQAVTAA-GTGCMAALEAEHY 367 (382)
Q Consensus 310 ~--~--~~~~~~~----~g~--------i~vd~~~~~t~~~~vya~GD~~~-----~~~~~~~~a~-~~g~~aa~~i~~~ 367 (382)
. . ..+.... -.. ..|+. +.+ -+|++|++|=... +....+..+| -+|+.+|+.|.+.
T Consensus 249 ~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~-t~e-v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~ 326 (357)
T PLN02661 249 TGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRL-TRE-VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKA 326 (357)
T ss_pred hhhhcccccCCccCCCCccccchhhHHHHHHhc-cCc-ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHH
Confidence 1 1 0011100 011 11221 222 3799999998763 2344455444 8999999999999
Q ss_pred HHHcc
Q 016820 368 LQEIG 372 (382)
Q Consensus 368 l~~~~ 372 (382)
|...+
T Consensus 327 l~~~~ 331 (357)
T PLN02661 327 LGLPN 331 (357)
T ss_pred Hccch
Confidence 98543
No 259
>PTZ00367 squalene epoxidase; Provisional
Probab=98.50 E-value=9.3e-07 Score=87.15 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=32.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM 91 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~ 91 (382)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999753
No 260
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=2.6e-06 Score=84.58 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=40.1
Q ss_pred CCceeeCCCCCcC-CCCceEEecccCC-chh-------hHHHHHHhhHHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHT-SVPGVFAAGDVQD-KKY-------RQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 319 ~g~i~vd~~~~~t-~~~~vya~GD~~~-~~~-------~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
.|.+.+|. ..+| +.||+||+|+|++ ... -....+...|+.|+.++++++..
T Consensus 346 ~GGi~vd~-~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 405 (566)
T PRK06452 346 MGGIDVDI-DGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKS 405 (566)
T ss_pred cCCeEECC-CCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 58889997 4567 4999999999974 221 15678899999999999988764
No 261
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.48 E-value=4.2e-06 Score=70.08 Aligned_cols=162 Identities=21% Similarity=0.297 Sum_probs=108.1
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------------ch------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------------AS------------------------ 243 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------------~~------------------------ 243 (382)
.-.|+|||+|++|+-.|.+|++.|.+|.++.++-.+. ..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 4579999999999999999999999999999988771 00
Q ss_pred ---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC------CceEEEecCeEEEeeCCCCChh-hhc--
Q 016820 244 ---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT------GQVSDLKVSGLFFAIGHEPATK-FVD-- 311 (382)
Q Consensus 244 ---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~------~~~~~~~~D~vi~~~G~~p~~~-~~~-- 311 (382)
..+..+.+ +.|.+++....++++--.++. .+.++.++...- -++..+++++++.+||.....- ++.
T Consensus 110 e~~skl~~~a~-~aGaki~n~~~veDvi~r~~~-rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 110 EFASKLAARAL-DAGAKIFNGVSVEDVIVRDDP-RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred HHHHHHHHHHH-hcCceeeecceEEEEEEecCC-ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence 11112223 357888989999988765542 377787764321 2346788999999999987542 222
Q ss_pred ---ccccccCCCc--------eeeCCCCCcCCCCceEEecccCC-----chhhHHHHHH-hhHHHHHHHHHHHHHH
Q 016820 312 ---GQLDLHSDGY--------IITKPGTTHTSVPGVFAAGDVQD-----KKYRQAVTAA-GTGCMAALEAEHYLQE 370 (382)
Q Consensus 312 ---~~~~~~~~g~--------i~vd~~~~~t~~~~vya~GD~~~-----~~~~~~~~a~-~~g~~aa~~i~~~l~~ 370 (382)
.++.+...+. +.|+. +++ -+||+|++|=+.. +....+..+| -+|+.+|+.|.+.|..
T Consensus 188 ~~~l~~~~~Ge~~mw~e~~E~lvV~~-T~e-V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 188 IPELGIEVPGEKSMWAERGEDLVVEN-TGE-VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred ccccccccCCCcchhhhHHHHHHHhc-ccc-ccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 1121111111 22222 222 4799999998763 2344455444 7899999999988864
No 262
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=2.2e-06 Score=85.52 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=40.3
Q ss_pred CCceeeCCCCCcCC------CCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHTS------VPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 319 ~g~i~vd~~~~~t~------~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
.|.+.+|. ..+|. .||+||+|+|++ .. -.....|+..|+.|++++++++..
T Consensus 352 ~GGi~vd~-~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~~ 416 (577)
T PRK06069 352 MGGIHTDV-YGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYALK 416 (577)
T ss_pred CCCceECC-CCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 58888988 66777 899999999974 11 124567889999999999988764
No 263
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=2.4e-06 Score=85.73 Aligned_cols=52 Identities=29% Similarity=0.367 Sum_probs=41.8
Q ss_pred CCceeeCCCCCcCCCCceEEecccCCch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQDKK-------YRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~-------~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
.|.+.+|.+.++|+.||+||+|+|++.. -.....|...|+.|++++++++.+
T Consensus 391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~ 449 (626)
T PRK07803 391 MGGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRG 449 (626)
T ss_pred cCCEEEcCCCCeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 5888999856678999999999987521 235668889999999999988754
No 264
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.48 E-value=2.5e-06 Score=85.09 Aligned_cols=51 Identities=29% Similarity=0.255 Sum_probs=40.6
Q ss_pred CCceeeCCCCCc----CCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTH----TSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 319 ~g~i~vd~~~~~----t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
.|.+.+|. ..+ |..||+||+|+|++ .. -.....|+..|+.|++++++++..
T Consensus 342 ~GGi~id~-~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 404 (566)
T TIGR01812 342 MGGIPTDY-TGRVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAK 404 (566)
T ss_pred CCCeEECc-CcccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 57888887 556 89999999999874 21 135678999999999999998764
No 265
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.47 E-value=3.7e-06 Score=84.32 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=31.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
..+||+|||+|.||+.||.++++.|.+|+|+||.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~ 82 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 82 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence 4689999999999999999999999999999973
No 266
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.46 E-value=5e-06 Score=82.94 Aligned_cols=35 Identities=43% Similarity=0.464 Sum_probs=32.3
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
...+||+|||+|.+|+.+|..++++|.+|+|||+.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~ 44 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKD 44 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 34689999999999999999999999999999963
No 267
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.46 E-value=4e-06 Score=81.17 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEec-CCcEEEE---ECCe---EEEcCEEEEccCCCC
Q 016820 118 LGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFK-SRPFKVF---TDSK---SVLADTVIVATGAVA 174 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~-~~~~~v~---~~~~---~~~~d~lvlA~G~~~ 174 (382)
+...+.+.+.+.+.+ .|++++.+ +|+++..+ ++.|.+. ++.+ ++++|+||+|.|.+.
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 344566666666644 48999888 79999877 6667765 3333 689999999999964
No 268
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.46 E-value=2e-06 Score=76.35 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHHcCcEEEEe-eEEEEE---ecCCcEEEEECCeE-EEcCEEEEccCCC
Q 016820 118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVD---FKSRPFKVFTDSKS-VLADTVIVATGAV 173 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~---~~~~~~~v~~~~~~-~~~d~lvlA~G~~ 173 (382)
.....+..++..++++|+.++.+ .|..+. .++..+.+.|.++. +.++.+|+++|++
T Consensus 151 ~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 151 NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 44667788899999999999988 466655 34445666665554 9999999999996
No 269
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.46 E-value=3.4e-06 Score=79.99 Aligned_cols=57 Identities=26% Similarity=0.256 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHHcCcEEEE-e-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820 118 LGGDLMDRCRNQSLRFGTQIFT-E-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~gi~~~~-~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
....+.+.+...+.+.|...+. + .+..++.+.+.+.+.++++++.+|.||+|+|.+.
T Consensus 154 ~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~i~a~~vv~a~G~~~ 212 (387)
T COG0665 154 DPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGTIEADKVVLAAGAWA 212 (387)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCccEEeCEEEEcCchHH
Confidence 3456667777777888854444 4 5667765324577888888899999999999863
No 270
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.43 E-value=4.6e-06 Score=83.55 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=31.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
..+||+|||+|.||+.||+++++.|.+|+|+||.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence 4689999999999999999999999999999973
No 271
>PLN02815 L-aspartate oxidase
Probab=98.42 E-value=4.4e-06 Score=83.07 Aligned_cols=50 Identities=22% Similarity=0.139 Sum_probs=38.9
Q ss_pred CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQ 369 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~ 369 (382)
-|.+.+|. ..+|+.||+||+|+|++ .. -.....++..|+.|+..++.++.
T Consensus 377 ~GGi~vD~-~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~~ 434 (594)
T PLN02815 377 CGGVRTGL-QGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHMA 434 (594)
T ss_pred CCCeeECC-CCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 58889998 67799999999999873 21 12456788889999999887653
No 272
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.42 E-value=3.7e-07 Score=63.21 Aligned_cols=37 Identities=35% Similarity=0.552 Sum_probs=32.2
Q ss_pred EECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 63 IIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 63 IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
|||||++|+++|+.|++.|++|+|+| +...+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E----~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFE----KNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEE----SSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEe----cCcccCcceeE
Confidence 89999999999999999999999999 66678887654
No 273
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.41 E-value=1.7e-06 Score=80.46 Aligned_cols=103 Identities=18% Similarity=0.122 Sum_probs=81.6
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
...||++|+|..|+++|..|...+.+|++|++.. ........+.+.+.++.++++.|+++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~--------------------~~~~~lf~~~i~~~~~~y~e~kgVk~ 272 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP--------------------WLLPRLFGPSIGQFYEDYYENKGVKF 272 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCc--------------------cchhhhhhHHHHHHHHHHHHhcCeEE
Confidence 5679999999999999999999999999999421 11112566788888999999999999
Q ss_pred EEee-EEEEEecC--CcEEEEE-CCeEEEcCEEEEccCCCCcCCCCC
Q 016820 138 FTET-VSKVDFKS--RPFKVFT-DSKSVLADTVIVATGAVAKKLQFP 180 (382)
Q Consensus 138 ~~~~-v~~i~~~~--~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~~~ 180 (382)
+.++ +.+++.+. +...+.. ++.++.+|.||+.+|.+|+...+.
T Consensus 273 ~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 273 YLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred EEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 9995 66776554 3333443 566799999999999999988665
No 274
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.41 E-value=2.8e-06 Score=81.53 Aligned_cols=93 Identities=22% Similarity=0.237 Sum_probs=71.2
Q ss_pred ccEEEECCcHHHHHHHHHHHH--------------cCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHH
Q 016820 59 TKVCIIGSGPAAHTAAIYAAR--------------AELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMD 124 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~--------------~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (382)
.+++|||||++|+++|..|+. .+.+|+||++. ..+ ++ ...+++.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--------~~l--------l~-----~~~~~~~~ 232 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAG--------SEV--------LG-----SFDQALRK 232 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCC--------Ccc--------cc-----cCCHHHHH
Confidence 489999999999999999976 36899999931 000 11 12356788
Q ss_pred HHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc
Q 016820 125 RCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175 (382)
Q Consensus 125 ~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~ 175 (382)
.+++.+++.||+++.+ .+.+++.+ .+.+. ++.++.+|.+|+|+|..|+
T Consensus 233 ~~~~~L~~~gV~v~~~~~v~~v~~~--~v~~~-~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 233 YGQRRLRRLGVDIRTKTAVKEVLDK--EVVLK-DGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred HHHHHHHHCCCEEEeCCeEEEEeCC--EEEEC-CCCEEEccEEEEccCCCCc
Confidence 8888999999999988 68888743 34432 5667999999999999876
No 275
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.40 E-value=5.8e-06 Score=83.33 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=40.0
Q ss_pred CCceeeCCCCCcC-CCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHT-SVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 319 ~g~i~vd~~~~~t-~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
-|.|.+|. ..+| ..|++||+|+|++ .. --+...++..|+.|++++++++.+
T Consensus 372 mGGi~vd~-~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~ 431 (657)
T PRK08626 372 MGGIRTNP-TGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLG 431 (657)
T ss_pred cCCceECC-CCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47899998 5677 5999999999874 11 124567889999999999998764
No 276
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.40 E-value=3.4e-06 Score=83.99 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=72.8
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCC---ccee---------------------cCC-----C
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPG---GQLT---------------------TTS-----D 106 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g---g~~~---------------------~~~-----~ 106 (382)
..+.+|+|||||++|+++|..|++.|++|+|+|+........| +.+. ... .
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 3568999999999999999999999999999997531101111 0000 000 0
Q ss_pred c------------ccCCC--------CC--CCCChHHHHHHHHHHHHHcCcE-EEEe-eEEEEEecCCcEEEEECC-eEE
Q 016820 107 V------------ENFPG--------FP--QGILGGDLMDRCRNQSLRFGTQ-IFTE-TVSKVDFKSRPFKVFTDS-KSV 161 (382)
Q Consensus 107 ~------------~~~~~--------~~--~~~~~~~~~~~~~~~~~~~gi~-~~~~-~v~~i~~~~~~~~v~~~~-~~~ 161 (382)
. ..+.. .+ ..+...++.+.|.+ ..+.. ++.+ +|++++.+++.+++...+ .++
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~---alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti 235 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILAR---AVGEDVIRNESNVVDFEDSGDKVTVVLENGQRY 235 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHh---hCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEE
Confidence 0 00000 00 01233444454433 33333 3445 799998888888777644 569
Q ss_pred EcCEEEEccCCCCcC
Q 016820 162 LADTVIVATGAVAKK 176 (382)
Q Consensus 162 ~~d~lvlA~G~~~~~ 176 (382)
.+|.||.|.|.++..
T Consensus 236 ~aDlVVGADG~~S~v 250 (668)
T PLN02927 236 EGDLLVGADGIWSKV 250 (668)
T ss_pred EcCEEEECCCCCcHH
Confidence 999999999997644
No 277
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.40 E-value=1.1e-05 Score=78.81 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=48.3
Q ss_pred ccCCCcEEEcCceeEEEEecCCc-eeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820 251 LTNPKIDVIWNSVVLEAYGEGDK-KVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD 311 (382)
Q Consensus 251 l~~~gv~~~~~~~v~~i~~~~~g-~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~ 311 (382)
+...+++++.++.+.+|..++++ ..++++.+.+..+++..++.++.+|+|.|..-+..++-
T Consensus 224 ~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL 285 (544)
T TIGR02462 224 APSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV 285 (544)
T ss_pred ccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence 45677999999999999987654 45888888775456667899999999999887766553
No 278
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.39 E-value=8.3e-07 Score=91.20 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=70.6
Q ss_pred ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCC---------C----------cccC-------
Q 016820 59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTS---------D----------VENF------- 110 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~---------~----------~~~~------- 110 (382)
++|+|||||++|+++|+.|++. |++|+|+|+..... ..|..+.... . ...+
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYD-TFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF 79 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCc-ccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE
Confidence 4799999999999999999998 89999999753221 1221111000 0 0000
Q ss_pred -------CCCC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcC
Q 016820 111 -------PGFP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 111 -------~~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~ 176 (382)
.+.+ ..+...++.+.|.+.+.+.|++++.+ ++.+++. ....+|.||.|+|.++..
T Consensus 80 ~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-----------~~~~~D~VVgADG~~S~v 143 (765)
T PRK08255 80 KGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-----------LAADADLVIASDGLNSRI 143 (765)
T ss_pred CCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-----------hhcCCCEEEEcCCCCHHH
Confidence 0000 13567889999999999999999888 4554431 124799999999987643
No 279
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=7.7e-06 Score=81.79 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
..+||||||+|.||++||+++++.|.+|+|+||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~ 44 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKV 44 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 5689999999999999999999999999999973
No 280
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=7.6e-06 Score=82.28 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=31.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
..+||+|||+|.||++||.++++.|.+|+|+|+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK 66 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCY 66 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence 468999999999999999999999999999996
No 281
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.35 E-value=1.4e-06 Score=78.59 Aligned_cols=119 Identities=22% Similarity=0.298 Sum_probs=76.6
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC-------CCCcceec------------------------C
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI-------APGGQLTT------------------------T 104 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~-------~~gg~~~~------------------------~ 104 (382)
....||+|||||.+|.++|+.|++.|.+|.+||+.....+ ++||.... .
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~ 122 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKD 122 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeC
Confidence 3568999999999999999999999999999997433322 33432110 0
Q ss_pred CC-------cccCCCCCCC--CChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCcEE---EEEC-C--eEEEcCEEEE
Q 016820 105 SD-------VENFPGFPQG--ILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRPFK---VFTD-S--KSVLADTVIV 168 (382)
Q Consensus 105 ~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~~~---v~~~-~--~~~~~d~lvl 168 (382)
.. ..+++.-+.+ .....+.+.+++.+.. .++++..++|.++-.+++.+. ...+ + .+..+..-|+
T Consensus 123 gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvV 202 (509)
T KOG1298|consen 123 GKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVV 202 (509)
T ss_pred CceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceEEE
Confidence 00 1111111111 1234577777776654 489999999998877766332 2222 2 2466888999
Q ss_pred ccCCCC
Q 016820 169 ATGAVA 174 (382)
Q Consensus 169 A~G~~~ 174 (382)
|.|+.+
T Consensus 203 CDGcfS 208 (509)
T KOG1298|consen 203 CDGCFS 208 (509)
T ss_pred ecchhH
Confidence 999854
No 282
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.35 E-value=1.1e-05 Score=80.66 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=32.3
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
...+||||||+|.||+.||.++++.|.+|+||||.
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 35689999999999999999999999999999973
No 283
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=1.2e-05 Score=80.25 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=31.6
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
...||||||+|.||+.||.++++.|.+|+|+||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~ 39 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKV 39 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3579999999999999999999999999999974
No 284
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=1.1e-05 Score=80.48 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=41.4
Q ss_pred CCceeeCCCCCcCCCCceEEecccCCch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQDKK-------YRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~-------~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
.|.+.||. ..+|+.||+||+|+|++.. -.+...|+..|+.|++++++++.+
T Consensus 355 ~GGi~vd~-~~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~~ 412 (589)
T PRK08641 355 MGGLWVDY-DQMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIKG 412 (589)
T ss_pred CCCeEECC-CCCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 58899998 5788999999999987421 235668899999999999988764
No 285
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=2e-06 Score=79.66 Aligned_cols=118 Identities=25% Similarity=0.251 Sum_probs=75.0
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEec------ccCCCCCCCcc----ee-----------cCCCccc-----
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEG------WMANDIAPGGQ----LT-----------TTSDVEN----- 109 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~------~~~~~~~~gg~----~~-----------~~~~~~~----- 109 (382)
...+||||||||.||+++|...++.|.+.+|+.. ++.++...||. ++ ..++...
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~ 105 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKV 105 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHH
Confidence 3568999999999999999999999999999985 33444445542 11 1111100
Q ss_pred --------CCCCCCCCChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCC---c--E--EEEECCeEEEcCEEEEccCCC
Q 016820 110 --------FPGFPQGILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSR---P--F--KVFTDSKSVLADTVIVATGAV 173 (382)
Q Consensus 110 --------~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~---~--~--~v~~~~~~~~~d~lvlA~G~~ 173 (382)
.-+....++...+...+++.+.. .++.++.+.|.++...+. . + .+..++..+.++.||+.||..
T Consensus 106 LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 106 LNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTF 185 (679)
T ss_pred hhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccc
Confidence 00111234556666677666543 367777787777643321 1 1 122366779999999999973
No 286
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=9.5e-07 Score=85.41 Aligned_cols=46 Identities=28% Similarity=0.315 Sum_probs=41.2
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS 105 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~ 105 (382)
..+++|+|||||+|||+||++|...|++|+|+| ..+.+||++....
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLE----ARdRvGGRI~t~~ 58 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLE----ARDRVGGRIYTFK 58 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEe----ccCCcCceeEEEe
Confidence 456899999999999999999999999999999 7789999887543
No 287
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.31 E-value=5.5e-06 Score=81.88 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=29.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
..+||||||+|.||++||+++++ |.+|+||||.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~ 40 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKD 40 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEcc
Confidence 46899999999999999999964 9999999974
No 288
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.31 E-value=4.4e-06 Score=76.37 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=73.4
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------------------------------------------- 241 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------------------------------------------- 241 (382)
..|+|||+|+.|+-+|..+.+.|++|+++++.+.+.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 579999999999999999999999999999888760
Q ss_pred -----------------------------chHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820 242 -----------------------------ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL 292 (382)
Q Consensus 242 -----------------------------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~ 292 (382)
....+ ...+++.||+++++++|..++.++.+ ..+.. .++.++
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~l-l~~~~~~gV~i~~~~~v~~v~~~~~~-----f~l~t---~~g~~i 154 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDAL-LKELEALGVTIRTRSRVSSVEKDDSG-----FRLDT---SSGETV 154 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHH-HHHHHHcCcEEEecceEEeEEecCce-----EEEEc---CCCCEE
Confidence 00111 23467789999999999999999853 55554 333589
Q ss_pred ecCeEEEeeCCCCCh
Q 016820 293 KVSGLFFAIGHEPAT 307 (382)
Q Consensus 293 ~~D~vi~~~G~~p~~ 307 (382)
.||.+|+|+|-...+
T Consensus 155 ~~d~lilAtGG~S~P 169 (408)
T COG2081 155 KCDSLILATGGKSWP 169 (408)
T ss_pred EccEEEEecCCcCCC
Confidence 999999999966433
No 289
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.30 E-value=4.6e-06 Score=76.12 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=70.0
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC------------Cc-c---------hHHHHHHhccCCCcEEEcCcee
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS------------FR-A---------SKIMQNRALTNPKIDVIWNSVV 264 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~------------~~-~---------~~~~~~~~l~~~gv~~~~~~~v 264 (382)
+++|||+|+.|+++|..|.+.|.+|+++++.+. ++ . ...+ ++.+++.|++++. ..+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~gv~~~~-~~v 79 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKM-KEQAVKFGAEIIY-EEV 79 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHH-HHHHHHcCCeEEE-EEE
Confidence 589999999999999999999999999997541 01 0 1222 3456677999988 789
Q ss_pred EEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820 265 LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD 311 (382)
Q Consensus 265 ~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~ 311 (382)
..++.+++. +.+.. .++..+.+|.+++|+|..|+...+.
T Consensus 80 ~~v~~~~~~-----~~v~~---~~~~~~~~d~liiAtG~~~~~~~i~ 118 (300)
T TIGR01292 80 IKVDLSDRP-----FKVKT---GDGKEYTAKAVIIATGASARKLGIP 118 (300)
T ss_pred EEEEecCCe-----eEEEe---CCCCEEEeCEEEECCCCCcccCCCC
Confidence 999887642 33433 2235799999999999988755443
No 290
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.29 E-value=8.1e-06 Score=81.89 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=31.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
.++||+|||||..|+++|+.|++.|++|+|||+
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~ 102 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVER 102 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 458999999999999999999999999999997
No 291
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.29 E-value=1.7e-05 Score=78.54 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=30.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
.++||||||+| +|+++|..+++.|.+|+||||
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek 46 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEK 46 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEec
Confidence 47899999999 899999999999999999996
No 292
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.27 E-value=1.9e-05 Score=78.81 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC----CcE---EE-EE-CCe--EEEcCEEEEccCCCC
Q 016820 118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS----RPF---KV-FT-DSK--SVLADTVIVATGAVA 174 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~----~~~---~v-~~-~~~--~~~~d~lvlA~G~~~ 174 (382)
++..+...+.+.+.+.||+++.+ .+.++..++ +.+ .. .. ++. .+.++.||+|||...
T Consensus 138 tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 138 TGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 34677888888888899999998 688876443 332 22 11 232 478999999999965
No 293
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.27 E-value=1.2e-05 Score=78.12 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC-CcEEEEE---C-C--eEEEcCEEEEccCCCC
Q 016820 118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS-RPFKVFT---D-S--KSVLADTVIVATGAVA 174 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~-~~~~v~~---~-~--~~~~~d~lvlA~G~~~ 174 (382)
+...+...+.+.+.+.|++++.+ +|+++..++ +.|.+.+ + + .++++|+||+|+|.+.
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 34566677777777889999988 799998754 3465542 1 2 2589999999999854
No 294
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.27 E-value=2e-05 Score=78.57 Aligned_cols=33 Identities=42% Similarity=0.576 Sum_probs=31.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
.++||+|||+|.+|+.+|..+++.|.+|+|||+
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek 47 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVER 47 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 367999999999999999999999999999996
No 295
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.26 E-value=9.8e-06 Score=79.59 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=39.8
Q ss_pred CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820 319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQE 370 (382)
Q Consensus 319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~ 370 (382)
.|.+.+|. ..+|+.|++||+|+|+. .. -.....+...|+.++++++++...
T Consensus 341 ~GGi~vd~-~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~~ 399 (513)
T PRK07512 341 MGGIAVDA-DGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPAA 399 (513)
T ss_pred cCCEEECC-CCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 48889998 67799999999999862 11 224567788999999999888654
No 296
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.23 E-value=3.5e-05 Score=71.77 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=40.2
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS 105 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~ 105 (382)
....||+|||+|.+||.+|++|.+.|++|+|+| .....||++....
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilE----ar~r~GGR~~t~r 50 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILE----ARDRVGGRSLTAR 50 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEe----ccCCcCceeEEEe
Confidence 356899999999999999999999999999999 6778888866443
No 297
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.23 E-value=8e-06 Score=80.39 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=67.5
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH-cCcE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR-FGTQ 136 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~ 136 (382)
.++|+|||||+.|+++|..|++.+.+|++++.. +.. .. ...+.+.+++ .||+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~--------------------~~l----~~---~~~l~~~l~~~~gV~ 404 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA--------------------DEL----KA---DKVLQDKLKSLPNVD 404 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC--------------------CcC----Ch---hHHHHHHHhcCCCCE
Confidence 469999999999999999999999999999931 000 01 1233444444 5999
Q ss_pred EEEe-eEEEEEecCCcE---EEEE--CC--eEEEcCEEEEccCCCCcCCCC
Q 016820 137 IFTE-TVSKVDFKSRPF---KVFT--DS--KSVLADTVIVATGAVAKKLQF 179 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~---~v~~--~~--~~~~~d~lvlA~G~~~~~~~~ 179 (382)
++.+ .+.++..+++.+ .+.. ++ .++.+|.|++|+|..|+..-+
T Consensus 405 i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l 455 (515)
T TIGR03140 405 ILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL 455 (515)
T ss_pred EEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHH
Confidence 9998 688887654432 2321 11 358999999999999976533
No 298
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.21 E-value=1.5e-05 Score=75.04 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=69.1
Q ss_pred cccEEEECCcHHHHHHHHHHHHc----C--CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHH
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARA----E--LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSL 131 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~----g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
..+|+|||+|++|+++|..|++. | .+|+|+.. ..+ + .....++.+.+.+.++
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~---------~~~--------l-----~~~~~~~~~~~~~~l~ 202 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG---------ASL--------L-----PGFPAKVRRLVLRLLA 202 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC---------Ccc--------c-----ccCCHHHHHHHHHHHH
Confidence 35899999999999999999853 4 47888851 000 0 1123556778888889
Q ss_pred HcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcC
Q 016820 132 RFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 132 ~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~ 176 (382)
+.||+++.+ ++..++.+ .+.+. ++.++.+|.+|+|+|.+|+.
T Consensus 203 ~~gV~v~~~~~v~~i~~~--~v~~~-~g~~i~~D~vi~a~G~~p~~ 245 (364)
T TIGR03169 203 RRGIEVHEGAPVTRGPDG--ALILA-DGRTLPADAILWATGARAPP 245 (364)
T ss_pred HCCCEEEeCCeeEEEcCC--eEEeC-CCCEEecCEEEEccCCChhh
Confidence 999999998 68888633 33332 56679999999999998863
No 299
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.20 E-value=2.8e-05 Score=75.78 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=30.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~ 90 (382)
..+||+|||||+.|+++|++|++. |.+|+|+|+.
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~ 39 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERL 39 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 457999999999999999999985 7899999974
No 300
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.19 E-value=3.1e-05 Score=76.84 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=31.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
.++||+|||+|.+|+++|..+++.|.+|+|||+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~ 38 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ 38 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 3689999999999999999999999999999963
No 301
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.18 E-value=3.5e-05 Score=76.83 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=31.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
.+.||||||+|.+|+++|+.+++.|.+|+|+||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~ 43 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKS 43 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcC
Confidence 4689999999999999999999999999999964
No 302
>PRK12839 hypothetical protein; Provisional
Probab=98.17 E-value=5e-05 Score=75.48 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=31.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
..+||+|||+|.+|+++|+.+++.|.+|+|||+.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~ 40 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKA 40 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 4689999999999999999999999999999963
No 303
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.16 E-value=2.3e-05 Score=75.35 Aligned_cols=33 Identities=33% Similarity=0.267 Sum_probs=31.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
..+||+|||||..|+.+|..++..|++|+|+|+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~ 43 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEK 43 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEec
Confidence 679999999999999999999999999999995
No 304
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=98.15 E-value=4e-06 Score=76.81 Aligned_cols=97 Identities=23% Similarity=0.261 Sum_probs=72.1
Q ss_pred cccEEEECCcHHHHHHHHHHHHc--------------CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHH
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARA--------------ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLM 123 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~--------------g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 123 (382)
.-++|||||||.|+++|.+|+.. ..+|+|+|+. |.. .......+.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~--------------------d~i-L~mFdkrl~ 276 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAA--------------------DHI-LNMFDKRLV 276 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccc--------------------hhH-HHHHHHHHH
Confidence 36899999999999999999865 3789999931 101 123457788
Q ss_pred HHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCC
Q 016820 124 DRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 124 ~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~ 177 (382)
+|.++.+.+.+|++..+ .|..++.+ .+.+.+.+ .++.|-.+|.|||..|+..
T Consensus 277 ~yae~~f~~~~I~~~~~t~Vk~V~~~--~I~~~~~~g~~~~iPYG~lVWatG~~~rp~ 332 (491)
T KOG2495|consen 277 EYAENQFVRDGIDLDTGTMVKKVTEK--TIHAKTKDGEIEEIPYGLLVWATGNGPRPV 332 (491)
T ss_pred HHHHHHhhhccceeecccEEEeecCc--EEEEEcCCCceeeecceEEEecCCCCCchh
Confidence 88888889999999999 57777643 34444432 3599999999999976543
No 305
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.15 E-value=1.4e-05 Score=74.76 Aligned_cols=95 Identities=22% Similarity=0.159 Sum_probs=65.0
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..+++|||+|+.|+++|..|.+.|.+ |+|+++.. . . ..+ .. ....+.++++|++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~----~----~----------~~~---~~----~~~~~~l~~~gi~ 226 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT----I----N----------EAP---AG----KYEIERLIARGVE 226 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc----h----h----------hCC---CC----HHHHHHHHHcCCE
Confidence 36899999999999999999999997 99998310 0 0 000 11 2233446778999
Q ss_pred EEEe-eEEEEEecCCcEEEE--------------------E-CCeEEEcCEEEEccCCCCcCC
Q 016820 137 IFTE-TVSKVDFKSRPFKVF--------------------T-DSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v~--------------------~-~~~~~~~d~lvlA~G~~~~~~ 177 (382)
++.+ .+.+++.+++...+. . ++..+.+|.||+|+|.+|+..
T Consensus 227 i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 289 (352)
T PRK12770 227 FLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPP 289 (352)
T ss_pred EeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCch
Confidence 9988 577776543311121 1 124699999999999998653
No 306
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.14 E-value=4.5e-05 Score=75.06 Aligned_cols=33 Identities=33% Similarity=0.338 Sum_probs=30.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
...||||||+| +|+++|+++++.|.+|+||||.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~ 38 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEAT 38 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecC
Confidence 36899999999 9999999999999999999974
No 307
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.11 E-value=4.9e-05 Score=81.66 Aligned_cols=36 Identities=36% Similarity=0.438 Sum_probs=33.1
Q ss_pred ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
.+.+.||||||+|.||++||.++++.|.+|+|+||.
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~ 441 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKE 441 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEcc
Confidence 356799999999999999999999999999999963
No 308
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1e-05 Score=71.87 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=90.4
Q ss_pred ccccccccccccccccC-CCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC
Q 016820 27 IVTTSSAAAAASFSATT-APKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS 105 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~ 105 (382)
+++|.++.-+..+.... ..++++... ....+-+.+|||||+.+|+||-.|+-.|++|++.-+.
T Consensus 167 IatG~RPrYp~IpG~~Ey~ITSDDlFs-l~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS--------------- 230 (503)
T KOG4716|consen 167 IATGLRPRYPDIPGAKEYGITSDDLFS-LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS--------------- 230 (503)
T ss_pred EEecCCCCCCCCCCceeeeeccccccc-ccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE---------------
Confidence 56888888777766553 344444333 3345568899999999999999999999999998741
Q ss_pred CcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEee-EEEEEecC-CcEEEEE------CCeEEEcCEEEEccCCCCcCC
Q 016820 106 DVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTET-VSKVDFKS-RPFKVFT------DSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~-v~~i~~~~-~~~~v~~------~~~~~~~d~lvlA~G~~~~~~ 177 (382)
++..-...++.+.+.+..+++|++|.... ...++..+ +.+.+.- ++..-.||.|++|.|..+...
T Consensus 231 -------I~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~ 303 (503)
T KOG4716|consen 231 -------ILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTD 303 (503)
T ss_pred -------eecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchh
Confidence 11223457888899999999999998873 44554433 3333321 223467999999999987554
Q ss_pred C
Q 016820 178 Q 178 (382)
Q Consensus 178 ~ 178 (382)
+
T Consensus 304 ~ 304 (503)
T KOG4716|consen 304 D 304 (503)
T ss_pred h
Confidence 3
No 309
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.08 E-value=8.4e-06 Score=69.70 Aligned_cols=104 Identities=24% Similarity=0.349 Sum_probs=72.8
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----------------hH--------HHHHHhccCCCcEEEcCc
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----------------SK--------IMQNRALTNPKIDVIWNS 262 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----------------~~--------~~~~~~l~~~gv~~~~~~ 262 (382)
+|+|||+|+.|+.+|..|.+.+.+++++...+.... .. .+. +.+...+++++.++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLV-DQLKNRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHH-HHHHHHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccc-cccccceEEEeecc
Confidence 589999999999999999999999999976553200 00 111 12356799998899
Q ss_pred eeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820 263 VVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD 311 (382)
Q Consensus 263 ~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~ 311 (382)
++.+++.....-....+.+.....+++.++.+|.+++|+|..|....+.
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~ 128 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP 128 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST
T ss_pred ccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecC
Confidence 9999988775100001222222235668899999999999998766444
No 310
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.07 E-value=2.2e-05 Score=67.27 Aligned_cols=92 Identities=20% Similarity=0.317 Sum_probs=58.7
Q ss_pred EEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCCcc-------------------------------h-------------
Q 016820 209 AVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSFRA-------------------------------S------------- 243 (382)
Q Consensus 209 ~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~~~-------------------------------~------------- 243 (382)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+.. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 999998865500 0
Q ss_pred ----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC--CCChh
Q 016820 244 ----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH--EPATK 308 (382)
Q Consensus 244 ----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~--~p~~~ 308 (382)
....+...++.+++++++++|+++..++++ ..+.. .++..+.+|.||+|+|. .|..+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-----w~v~~---~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-----WTVTT---RDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-----EEEEE---TTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-----EEEEE---EecceeeeeeEEEeeeccCCCCcc
Confidence 011234456678889999999999999875 44444 22257889999999997 45444
No 311
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.07 E-value=5.2e-05 Score=73.61 Aligned_cols=95 Identities=19% Similarity=0.141 Sum_probs=66.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
...+|+|||+|..|+.+|..|.+.|. +|+++++.. ...++. . .. ..+.+.+.||
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~---------------~~~~~~-----~-~~----~~~~~~~~GV 326 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG---------------REEMPA-----S-EE----EVEHAKEEGV 326 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC---------------cccCCC-----C-HH----HHHHHHHCCC
Confidence 35799999999999999999999998 899998310 001111 1 11 2344577899
Q ss_pred EEEEe-eEEEEEecCCc---EEEEE------------------CCeEEEcCEEEEccCCCCcC
Q 016820 136 QIFTE-TVSKVDFKSRP---FKVFT------------------DSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~~~---~~v~~------------------~~~~~~~d~lvlA~G~~~~~ 176 (382)
+++.+ .+..+..+++. +.+.. +..++.+|.||+|+|..|+.
T Consensus 327 ~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 327 EFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred EEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 99988 57777665533 33321 22359999999999999874
No 312
>PRK07208 hypothetical protein; Provisional
Probab=98.07 E-value=1.1e-05 Score=78.92 Aligned_cols=43 Identities=37% Similarity=0.416 Sum_probs=38.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
..+||+|||||++||++|+.|++.|++|+|+| +...+||.+..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E----~~~~~GG~~~s 45 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLE----ADPVVGGISRT 45 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEe----cCCCCCceeee
Confidence 45799999999999999999999999999999 56678887654
No 313
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.03 E-value=5.6e-06 Score=80.75 Aligned_cols=43 Identities=35% Similarity=0.409 Sum_probs=38.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
..+||||||||+.||.+|..|+++|++|+|+| +...+||....
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE----~~~~~GG~a~t 44 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLE----KNDRVGGRART 44 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEE----ecCCCCcceEE
Confidence 35899999999999999999999999999999 66678886553
No 314
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=6.1e-06 Score=78.06 Aligned_cols=44 Identities=32% Similarity=0.379 Sum_probs=39.2
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD 106 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~ 106 (382)
++|+|+|||.|||++|++|++.|++|+|+| ..+..||.+....+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~e----a~~~~GGk~~s~~~ 44 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYE----ARDRLGGKVASWRD 44 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEe----ccCccCceeeeeec
Confidence 479999999999999999999999999999 77888988765443
No 315
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.02 E-value=3.2e-05 Score=73.29 Aligned_cols=94 Identities=18% Similarity=0.284 Sum_probs=59.3
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------------------------------------------
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------------------------------- 241 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------------------------------- 241 (382)
+|+|||+|++|+-+|..+++.|.+|+++++++.+.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 58999999999999999999999999999998770
Q ss_pred ----------------------ch---H---HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEe
Q 016820 242 ----------------------AS---K---IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLK 293 (382)
Q Consensus 242 ----------------------~~---~---~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~ 293 (382)
.+ . ..+.+.+++.||+++++++|.++..++++ +..|+. .+...+.
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~--~f~v~~-----~~~~~~~ 154 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG--VFGVKT-----KNGGEYE 154 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE--EEEEEE-----TTTEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc--eeEeec-----cCccccc
Confidence 00 0 11123356689999999999999987764 233333 2336899
Q ss_pred cCeEEEeeCCCCCh
Q 016820 294 VSGLFFAIGHEPAT 307 (382)
Q Consensus 294 ~D~vi~~~G~~p~~ 307 (382)
+|.||+|+|..+.+
T Consensus 155 a~~vILAtGG~S~p 168 (409)
T PF03486_consen 155 ADAVILATGGKSYP 168 (409)
T ss_dssp ESEEEE----SSSG
T ss_pred CCEEEEecCCCCcc
Confidence 99999999987643
No 316
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.02 E-value=3.4e-05 Score=74.61 Aligned_cols=95 Identities=20% Similarity=0.123 Sum_probs=64.5
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
.++|+|||||..|+.+|..|.++|.+|+++++... ..++ .... ..+.+.+.||++
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~---------------~~~~------~~~~----~~~~l~~~GV~~ 326 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR---------------EDMT------ARVE----EIAHAEEEGVKF 326 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc---------------ccCC------CCHH----HHHHHHhCCCEE
Confidence 47899999999999999999999999999984200 0011 1111 223456779999
Q ss_pred EEe-eEEEEEec-CCcE---EEE------------------EC-CeEEEcCEEEEccCCCCcCC
Q 016820 138 FTE-TVSKVDFK-SRPF---KVF------------------TD-SKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 138 ~~~-~v~~i~~~-~~~~---~v~------------------~~-~~~~~~d~lvlA~G~~~~~~ 177 (382)
+.+ .+.++..+ ++.+ .+. .+ ..++.+|.||+|+|..|+..
T Consensus 327 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~ 390 (449)
T TIGR01316 327 HFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI 390 (449)
T ss_pred EeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch
Confidence 877 56676543 2222 221 01 12599999999999998764
No 317
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.00 E-value=3.8e-05 Score=75.70 Aligned_cols=95 Identities=17% Similarity=0.104 Sum_probs=67.5
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH-cCcE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR-FGTQ 136 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~ 136 (382)
.++|+|||||..|+++|..|+..+.+|+|+++. . .. .. ...+.+.+.+ .||+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~----~----------------~l---~~----~~~l~~~l~~~~gI~ 403 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFA----P----------------EL---KA----DQVLQDKLRSLPNVT 403 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEEC----c----------------cc---cc----cHHHHHHHhcCCCcE
Confidence 468999999999999999999999999999931 0 00 00 1233444444 5999
Q ss_pred EEEe-eEEEEEecCCcE---EEEE--CC--eEEEcCEEEEccCCCCcCCCC
Q 016820 137 IFTE-TVSKVDFKSRPF---KVFT--DS--KSVLADTVIVATGAVAKKLQF 179 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~---~v~~--~~--~~~~~d~lvlA~G~~~~~~~~ 179 (382)
++.+ .+.++..+++.+ .+.. ++ .++.+|.+++|+|..|+...+
T Consensus 404 i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l 454 (517)
T PRK15317 404 IITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWL 454 (517)
T ss_pred EEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHH
Confidence 9998 688887664433 2221 12 359999999999999976533
No 318
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.00 E-value=7.8e-06 Score=79.25 Aligned_cols=42 Identities=31% Similarity=0.381 Sum_probs=37.3
Q ss_pred ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecC
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTT 104 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~ 104 (382)
++|+|||||++||+||+.|++.| ++|+|+| ....+||++...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlE----a~~~~GGr~~t~ 44 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLE----ASDRLGGKIQTV 44 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEE----cCCCCcceEEEE
Confidence 47999999999999999999988 8999999 667889987653
No 319
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.99 E-value=7.8e-05 Score=71.87 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHcCcEEEEe-eEEEEEec--CCcEE-EEE--CCeEEEcCEEEEccCCCC
Q 016820 119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK--SRPFK-VFT--DSKSVLADTVIVATGAVA 174 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~--~~~~~-v~~--~~~~~~~d~lvlA~G~~~ 174 (382)
...+.+.+.+.+++.|++++.+ +|+++..+ ++.+. +.. +...+.++.||+|+|...
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 3567788888889999999998 68888765 33332 232 234689999999999743
No 320
>PLN02268 probable polyamine oxidase
Probab=97.97 E-value=9.5e-06 Score=78.29 Aligned_cols=42 Identities=33% Similarity=0.375 Sum_probs=38.0
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT 104 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~ 104 (382)
.+|+|||||.+||++|+.|.+.|++|+|+| ....+||++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlE----a~~r~GGri~t~ 42 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLE----SRDRIGGRVHTD 42 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEe----CCCCCCceeeec
Confidence 479999999999999999999999999999 677889988753
No 321
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.97 E-value=2.8e-05 Score=76.01 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=59.3
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI 137 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 137 (382)
.++|+|||+|.+|+++|..|+++|++|+++|+. ..+....+.+.+++.|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~----------------------------~~~~~~~~~~~l~~~gv~~ 67 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG----------------------------DDERHRALAAILEALGATV 67 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC----------------------------chhhhHHHHHHHHHcCCEE
Confidence 458999999999999999999999999999931 0122334445567779998
Q ss_pred EEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCC
Q 016820 138 FTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQF 179 (382)
Q Consensus 138 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~ 179 (382)
+.+.... ....+|.||+++|..|+.|.+
T Consensus 68 ~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 68 RLGPGPT--------------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred EECCCcc--------------ccCCCCEEEECCCcCCCCHHH
Confidence 8764111 013589999999999988743
No 322
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.95 E-value=0.0002 Score=67.10 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCc-EEEEE------CCeEEEcCEEEEccCCC
Q 016820 119 GGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRP-FKVFT------DSKSVLADTVIVATGAV 173 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~-~~v~~------~~~~~~~d~lvlA~G~~ 173 (382)
...+.+.+.+.+.+. ++++..+ +|++|...++. |.|.. +..++++++|++..|..
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~ 243 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG 243 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH
Confidence 345566666666665 8999888 89999988665 88875 23569999999999984
No 323
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.94 E-value=6.7e-05 Score=73.06 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=64.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
..++|+|||+|..|+.+|..+.++|. +|++++.. ..+..... .....+.++ . ....+.+.+.|+
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~----~~~~~~~~---~~~~~~~~~-----~---~~~~~~~~~~GV 344 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM----PMPPSRRN---KNNPWPYWP-----M---KLEVSNAHEEGV 344 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc----CCCccccc---cccCCcccc-----h---HHHHHHHHHcCC
Confidence 35789999999999999999999986 68877621 00000000 000000010 0 112344567799
Q ss_pred EEEEe-eEEEEEecCCcEE-EE-----E----------CCeEEEcCEEEEccCCCCcC
Q 016820 136 QIFTE-TVSKVDFKSRPFK-VF-----T----------DSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~~~~~-v~-----~----------~~~~~~~d~lvlA~G~~~~~ 176 (382)
+++.+ .+++|..+++.++ +. . +..++.+|.||+|+|..|+.
T Consensus 345 ~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~ 402 (471)
T PRK12810 345 EREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPE 402 (471)
T ss_pred eEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCc
Confidence 99888 5777764444332 21 1 11459999999999998864
No 324
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.93 E-value=5.3e-05 Score=69.63 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=30.5
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
+.+|+|||||.+|+++|..|+++|++|+|+|+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLES 33 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence 46899999999999999999999999999996
No 325
>PLN02576 protoporphyrinogen oxidase
Probab=97.91 E-value=1.9e-05 Score=77.65 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=38.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccCCCCCCCcceecC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMANDIAPGGQLTTT 104 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~~~~~gg~~~~~ 104 (382)
..+||+|||||++||++|+.|++. |++|+|+| +...+||.+...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlE----a~~rvGGr~~t~ 55 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTE----ARDRVGGNITSV 55 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEe----cCCCCCCceeEe
Confidence 346899999999999999999999 99999999 667888887654
No 326
>PRK12831 putative oxidoreductase; Provisional
Probab=97.89 E-value=0.00013 Score=70.75 Aligned_cols=96 Identities=19% Similarity=0.131 Sum_probs=63.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++|+|||||..|+.+|..|.++|.+|+|+++.. ....+. ...++ +.+.+.|++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~------------------~~~m~a--~~~e~-----~~a~~eGV~ 334 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS------------------EEELPA--RVEEV-----HHAKEEGVI 334 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC------------------cccCCC--CHHHH-----HHHHHcCCE
Confidence 35799999999999999999999999999998410 011111 11121 224567999
Q ss_pred EEEe-eEEEEEecC-CcE---EEE---E--------------CC--eEEEcCEEEEccCCCCcCC
Q 016820 137 IFTE-TVSKVDFKS-RPF---KVF---T--------------DS--KSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 137 ~~~~-~v~~i~~~~-~~~---~v~---~--------------~~--~~~~~d~lvlA~G~~~~~~ 177 (382)
++.. .+..+..++ +.+ .+. . ++ ..+.+|.||+|+|..|+..
T Consensus 335 i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 399 (464)
T PRK12831 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL 399 (464)
T ss_pred EEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChh
Confidence 9877 466665432 222 111 0 11 2599999999999998764
No 327
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.89 E-value=7.1e-05 Score=67.04 Aligned_cols=42 Identities=36% Similarity=0.487 Sum_probs=36.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
...+|+|||+|++||+||..|.+. ++|+|+| .+...||+...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfE----A~~rlGGha~T 48 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFE----ADRRLGGHANT 48 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEe----ccccccCccce
Confidence 457999999999999999999887 8999999 66778877554
No 328
>PRK07233 hypothetical protein; Provisional
Probab=97.88 E-value=1.7e-05 Score=76.48 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=36.1
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
+|+|||||++||++|+.|++.|++|+|+| +...+||.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE----~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFE----ADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEE----eCCCCCCceee
Confidence 58999999999999999999999999999 66678887654
No 329
>PRK06847 hypothetical protein; Provisional
Probab=97.88 E-value=0.00011 Score=69.36 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------ 242 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------ 242 (382)
.++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 46899999999999999999999999999987764200
Q ss_pred ------h----------------HH---HHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820 243 ------S----------------KI---MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL 297 (382)
Q Consensus 243 ------~----------------~~---~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v 297 (382)
. .. .+.+.+.+.|++++.++++.+++.++++ +.+.. .++.++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-----~~v~~---~~g~~~~ad~v 155 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG-----VTVTF---SDGTTGRYDLV 155 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-----EEEEE---cCCCEEEcCEE
Confidence 0 00 0112233468899999999999876653 33333 12256899999
Q ss_pred EEeeCCCCCh
Q 016820 298 FFAIGHEPAT 307 (382)
Q Consensus 298 i~~~G~~p~~ 307 (382)
|.|.|..+..
T Consensus 156 I~AdG~~s~~ 165 (375)
T PRK06847 156 VGADGLYSKV 165 (375)
T ss_pred EECcCCCcch
Confidence 9999987644
No 330
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.88 E-value=1.7e-05 Score=77.13 Aligned_cols=43 Identities=33% Similarity=0.468 Sum_probs=38.2
Q ss_pred cccEEEECCcHHHHHHHHHHHHc----CCCeEEEecccCCCCCCCcceecC
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARA----ELKPILFEGWMANDIAPGGQLTTT 104 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~lie~~~~~~~~~gg~~~~~ 104 (382)
++||+|||||++||++|+.|++. |++|+|+| +...+||.+...
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE----~~~r~GG~~~t~ 48 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVE----ASDRVGGKIQTV 48 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEE----cCCcCcceEEEE
Confidence 36899999999999999999999 99999999 667888887653
No 331
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.86 E-value=0.00027 Score=65.79 Aligned_cols=47 Identities=30% Similarity=0.291 Sum_probs=41.8
Q ss_pred ceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHH
Q 016820 321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQ 369 (382)
Q Consensus 321 ~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~ 369 (382)
.+.+|++ ++|+.+|+|++||+++. .+.+..|..+|-.+|+.|+.+..
T Consensus 438 ri~~d~~-~~t~i~gLy~aGdGAG~-argI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 438 RIKVDED-LSTSIKGLYPAGDGAGL-ARGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred eEeeccc-ceeeecceEEccccccc-cchhHHHhhhhHHHHHHHHHHhc
Confidence 5788884 99999999999999984 68999999999999999998754
No 332
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=4.6e-05 Score=67.57 Aligned_cols=71 Identities=15% Similarity=0.091 Sum_probs=53.3
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc------ccCCCCCCCCChHHHHHHHHHHHHH
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV------ENFPGFPQGILGGDLMDRCRNQSLR 132 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
+|++|||+|.+|+.+|..|+++|.+|.||| +...+||.+....+- |.+...-.+-+...+.+++....+-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIve----kR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e~ 77 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVE----KRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTEF 77 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEe----ccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhhh
Confidence 689999999999999999999999999999 566888877654332 2332222344667888888877654
Q ss_pred c
Q 016820 133 F 133 (382)
Q Consensus 133 ~ 133 (382)
.
T Consensus 78 ~ 78 (374)
T COG0562 78 N 78 (374)
T ss_pred h
Confidence 3
No 333
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.84 E-value=0.00011 Score=72.98 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=63.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
...+|+|||||+.|+++|..|++.|.+|+++++.. .+ .....+. .+.....|++
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~--------------------~~---~~~~~~~---~~~~~~~gV~ 195 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP--------------------DF---TCAKLIA---EKVKNHPKIE 195 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC--------------------cc---ccCHHHH---HHHHhCCCcE
Confidence 35789999999999999999999999999999410 00 0011222 2223446999
Q ss_pred EEEe-eEEEEEecCCc--EEEEE--CCeE--E--EcCE----EEEccCCCCcCCC
Q 016820 137 IFTE-TVSKVDFKSRP--FKVFT--DSKS--V--LADT----VIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~--~~v~~--~~~~--~--~~d~----lvlA~G~~~~~~~ 178 (382)
++.+ .+..++.++.. +.+.. ++.. + .+|. |++|+|..|+..-
T Consensus 196 i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l 250 (555)
T TIGR03143 196 VKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSEL 250 (555)
T ss_pred EEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhH
Confidence 9988 68888754432 11111 2332 2 3566 9999999997753
No 334
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.84 E-value=0.00013 Score=71.69 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=63.2
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------ 242 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------ 242 (382)
.|+|+|||+|.+|+-.+..|.+.|.+++++++.+.+..
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 37999999999999999999999999999998886610
Q ss_pred --hH---HHHHHhccCCCc--EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820 243 --SK---IMQNRALTNPKI--DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 243 --~~---~~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~ 304 (382)
.. ..++.+.+..++ .+.++++|.+++..++......-.+....++...+-.+|.|++|+|.-
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence 01 111233333443 577899999998765421111133333334444566799999999985
No 335
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.82 E-value=0.0002 Score=63.98 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=30.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc----CCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA----ELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~----g~~v~lie~~ 90 (382)
...||+|||||..|.+.|+.|++. |++|+++|+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd 122 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD 122 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence 468999999999999999999887 7999999973
No 336
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.81 E-value=2.4e-05 Score=76.77 Aligned_cols=41 Identities=39% Similarity=0.516 Sum_probs=36.5
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
+||+|||||++||++|..|++.|++|+|+| +...+||....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE----~~~~~GG~~~t 42 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLE----QHAQPGGCAGT 42 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEe----cCCCCCCccce
Confidence 689999999999999999999999999999 56677776543
No 337
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.81 E-value=2.6e-05 Score=73.92 Aligned_cols=42 Identities=40% Similarity=0.510 Sum_probs=37.9
Q ss_pred ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecC
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTT 104 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~ 104 (382)
++|+|||||++||++|++|++.+ ++++|+| .+...||.+...
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE----~~~r~GG~l~T~ 44 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFE----ADDRVGGLLRTV 44 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEe----cCCCCCceEEEE
Confidence 47999999999999999999999 9999999 677899987753
No 338
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.80 E-value=2.8e-05 Score=72.68 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=35.6
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
+||+|||||++|+++|..|++.|.+|+|+| +....||.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viE----k~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVE----KRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEe----cCCCCCCceee
Confidence 689999999999999999999999999999 45567776543
No 339
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.80 E-value=0.00056 Score=66.19 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=82.1
Q ss_pred CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc------------------------------------------
Q 016820 204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------------------------------------------ 241 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~------------------------------------------ 241 (382)
..++|+|||+|++|+-.|..|.+.|.+|+++++++.+.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 46899999999999999999999999999888765330
Q ss_pred --------------------chHHH---HHHhccCCCcE--EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820 242 --------------------ASKIM---QNRALTNPKID--VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296 (382)
Q Consensus 242 --------------------~~~~~---~~~~l~~~gv~--~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~ 296 (382)
....+ ++...+..|++ +.++++|.+++..+++ ..|...+. .+...+..+|.
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~---w~V~~~~~-~~~~~~~~~d~ 164 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK---WRVQSKNS-GGFSKDEIFDA 164 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe---EEEEEEcC-CCceEEEEcCE
Confidence 00111 12223345666 7789999999886542 22443321 12223568999
Q ss_pred EEEeeC--CCCChhhhcccccccCCCceeeCCCCCcC----CCCceEEecccCC
Q 016820 297 LFFAIG--HEPATKFVDGQLDLHSDGYIITKPGTTHT----SVPGVFAAGDVQD 344 (382)
Q Consensus 297 vi~~~G--~~p~~~~~~~~~~~~~~g~i~vd~~~~~t----~~~~vya~GD~~~ 344 (382)
||+|+| ..|+.+.+. ++..- .|.+.-- +.++. ..++|-++|-...
T Consensus 165 VIvAtG~~~~P~~P~ip-G~~~f-~G~~iHs-~~yr~~~~~~gk~VvVVG~G~S 215 (461)
T PLN02172 165 VVVCNGHYTEPNVAHIP-GIKSW-PGKQIHS-HNYRVPDPFKNEVVVVIGNFAS 215 (461)
T ss_pred EEEeccCCCCCcCCCCC-CcccC-CceEEEe-cccCCccccCCCEEEEECCCcC
Confidence 999999 456655443 33110 1211111 11221 3577999987653
No 340
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.78 E-value=0.00034 Score=62.45 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=32.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
...||+|||+|.+|+-+|.+|+..|.+|+++|++
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQE 37 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQE 37 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccc
Confidence 4689999999999999999999999999999975
No 341
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.77 E-value=0.00022 Score=67.91 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=32.7
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~ 240 (382)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 568999999999999999999999999999987654
No 342
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.77 E-value=7.2e-05 Score=68.44 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=74.1
Q ss_pred cccEEEECCcHHHHHHHHHHHHc----CCCeEEE-ecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARA----ELKPILF-EGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR 132 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~li-e~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
+..|.|||+|+.|.++|+.|.+. |.+|.-+ +. + +....+.++.+.++-.+..++
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~E-------------------k--~nm~kiLPeyls~wt~ekir~ 405 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEE-------------------K--YNMEKILPEYLSQWTIEKIRK 405 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecc-------------------c--CChhhhhHHHHHHHHHHHHHh
Confidence 47899999999999999999886 4444322 20 0 111234456677777778888
Q ss_pred cCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCC
Q 016820 133 FGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 133 ~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~ 177 (382)
-|++++.+ .|.++....+.+.+..+ +.+++.|.||+|+|..|+..
T Consensus 406 ~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 406 GGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred cCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 89999988 68888877777777664 55699999999999999875
No 343
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.77 E-value=0.00033 Score=67.13 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=67.1
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------ 242 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------ 242 (382)
..+|+|||+|+.|+-+|..|.+.|.+|+++++++.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 46799999999999999999999999999997764300
Q ss_pred ----------------------hHHHHH---HhccC-CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820 243 ----------------------SKIMQN---RALTN-PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296 (382)
Q Consensus 243 ----------------------~~~~~~---~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~ 296 (382)
...+.+ +.+.+ .+++++.++++.+++.++++ ..+++.+ .++..++.+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~---~~v~~~~--~~~~~~i~adl 172 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA---ATVTLEI--EGKQQTLQSKL 172 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe---eEEEEcc--CCcceEEeeeE
Confidence 000011 11222 47888888999998776653 1244432 23235799999
Q ss_pred EEEeeCCCCC
Q 016820 297 LFFAIGHEPA 306 (382)
Q Consensus 297 vi~~~G~~p~ 306 (382)
||.|.|....
T Consensus 173 vIgADG~~S~ 182 (415)
T PRK07364 173 VVAADGARSP 182 (415)
T ss_pred EEEeCCCCch
Confidence 9999997654
No 344
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.76 E-value=3.2e-05 Score=75.28 Aligned_cols=42 Identities=26% Similarity=0.503 Sum_probs=36.8
Q ss_pred ccEEEECCcHHHHHHHHHHHHc------CCCeEEEecccCCCCCCCcceecC
Q 016820 59 TKVCIIGSGPAAHTAAIYAARA------ELKPILFEGWMANDIAPGGQLTTT 104 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~------g~~v~lie~~~~~~~~~gg~~~~~ 104 (382)
++|+|||||++||++|+.|++. |++|+|+| ....+||.+...
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlE----a~~r~GGr~~T~ 49 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVE----KEEYLGGKIHSV 49 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEe----cCCCccceEEEE
Confidence 4799999999999999999986 38999999 667889987754
No 345
>PLN02568 polyamine oxidase
Probab=97.76 E-value=3.7e-05 Score=75.68 Aligned_cols=43 Identities=30% Similarity=0.372 Sum_probs=37.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcC-----CCeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAE-----LKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g-----~~v~lie~~~~~~~~~gg~~~~ 103 (382)
+.+||+|||||++|+++|+.|++.| ++|+|+| +...+||.+..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E----~~~~~GGr~~t 51 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVE----GGDRIGGRINT 51 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEe----CCCCcCCeEEE
Confidence 3579999999999999999999987 8999999 56678887654
No 346
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.76 E-value=0.00018 Score=62.89 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=30.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcC------CCeEEEec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAE------LKPILFEG 89 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g------~~v~lie~ 89 (382)
..++|+|||||..|+.+|+.|.+++ .+|+|+|+
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs 47 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFES 47 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEee
Confidence 3489999999999999999999997 89999995
No 347
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.75 E-value=0.00023 Score=66.35 Aligned_cols=97 Identities=20% Similarity=0.277 Sum_probs=68.4
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------------------------------------c---
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------------------------------------A--- 242 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------------------------------------~--- 242 (382)
+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+. .
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 59999999999999999999999999999987660 0
Q ss_pred --------------------------h----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820 243 --------------------------S----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL 292 (382)
Q Consensus 243 --------------------------~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~ 292 (382)
. ...+.+.+++.|++++.++++..++.+.++ + .+.+....++...++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~--~-~~~~~~~~~g~~~~i 159 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDG--V-TVVVRDGEDGEEETI 159 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTE--E-EEEEEETCTCEEEEE
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccc--c-ccccccccCCceeEE
Confidence 0 011112234467899999999999888765 1 234444444555689
Q ss_pred ecCeEEEeeCCCCC
Q 016820 293 KVSGLFFAIGHEPA 306 (382)
Q Consensus 293 ~~D~vi~~~G~~p~ 306 (382)
.+|+||-|-|....
T Consensus 160 ~adlvVgADG~~S~ 173 (356)
T PF01494_consen 160 EADLVVGADGAHSK 173 (356)
T ss_dssp EESEEEE-SGTT-H
T ss_pred EEeeeecccCcccc
Confidence 99999999999874
No 348
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.75 E-value=0.00015 Score=67.56 Aligned_cols=89 Identities=25% Similarity=0.488 Sum_probs=61.8
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEE-eCCCC---------------------------------------------
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIH-RRDSF--------------------------------------------- 240 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~-~~~~~--------------------------------------------- 240 (382)
.|+|||+|..|+|.|..+++.|.+|.++. ..+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 48999999999999999999999999994 33333
Q ss_pred ---------------cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820 241 ---------------RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH 303 (382)
Q Consensus 241 ---------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~ 303 (382)
.+...+.+.+....+++++ ...+.++..+++ .+.+|.+.+ + ..+.+|.||++||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~--~v~GV~~~~---g--~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENG--KVKGVVTKD---G--EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTT--EEEEEEETT---S--EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCC--eEEEEEeCC---C--CEEecCEEEEeccc
Confidence 0112332333344889987 568999988764 366666643 3 68999999999999
No 349
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00026 Score=68.61 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec-CCcEEEEECCeEEEcCEEEEccCCCC
Q 016820 117 ILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK-SRPFKVFTDSKSVLADTVIVATGAVA 174 (382)
Q Consensus 117 ~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~-~~~~~v~~~~~~~~~d~lvlA~G~~~ 174 (382)
+++..+...+...++++|..++.+ -|++|... ++.+-|+|.-+.+++.++|-|+|.+.
T Consensus 184 ~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcceecceEEechhHHH
Confidence 355677788888999999999988 58888754 44567888888999999999999754
No 350
>PRK06834 hypothetical protein; Provisional
Probab=97.73 E-value=0.00026 Score=69.14 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=68.7
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----c--------------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----A-------------------------------------- 242 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----~-------------------------------------- 242 (382)
..|+|||+|++|+-+|..|.+.|.+|+++++.+... .
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 579999999999999999999999999999876420 0
Q ss_pred --------------hH----HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820 243 --------------SK----IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 243 --------------~~----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~ 304 (382)
.+ ..+.+.+++.|++++.++++..++.++++ +.+.. .++ ..+.+|++|.|.|..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-----v~v~~-~~g--~~i~a~~vVgADG~~ 155 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-----VDVEL-SDG--RTLRAQYLVGCDGGR 155 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-----EEEEE-CCC--CEEEeCEEEEecCCC
Confidence 00 01112344568999999999999887764 44443 113 478999999999987
Q ss_pred CC
Q 016820 305 PA 306 (382)
Q Consensus 305 p~ 306 (382)
+.
T Consensus 156 S~ 157 (488)
T PRK06834 156 SL 157 (488)
T ss_pred CC
Confidence 64
No 351
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.72 E-value=3.6e-05 Score=75.73 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=34.4
Q ss_pred EEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 61 VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 61 vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
|||||||.+||+||..|++.|++|+|+| +...+||.+..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE----~~~~~GG~~~t 39 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVE----QRDKPGGRAGV 39 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEE----CCCCCcCceEE
Confidence 6899999999999999999999999999 56677776543
No 352
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.71 E-value=0.00074 Score=57.10 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=70.4
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------------------------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------------------------------------------- 241 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~------------------------------------------- 241 (382)
...++|||+|++|+-+|.+|++.|.+|.+++++..+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 3579999999999999999999999999999887661
Q ss_pred -chHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc------CCceEEEecCeEEEeeCCCCCh
Q 016820 242 -ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV------TGQVSDLKVSGLFFAIGHEPAT 307 (382)
Q Consensus 242 -~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~------~~~~~~~~~D~vi~~~G~~p~~ 307 (382)
....+..+.++ .|++++....++++--.++ ..+.++.++... .-++..+.+.+|+.+||.....
T Consensus 97 ~~~s~L~s~a~~-aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 97 EFTSTLASKAID-AGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHT-TTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHhc-CCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 01122233344 8999999999999877664 358888887542 1245689999999999998754
No 353
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.71 E-value=4.9e-05 Score=74.54 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=36.2
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
+||+|||||.+|+++|..|++.|++|+|+| +...+||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE----~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLE----RYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEE----CCCCCCCceeE
Confidence 589999999999999999999999999999 56677776554
No 354
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.68 E-value=5.2e-05 Score=73.57 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=35.5
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
+|+|||||++|+++|+.|.+.|++|+|+| +...+||.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE----~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLE----ARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEe----cCCCCCCCcce
Confidence 58999999999999999999999999999 55677887654
No 355
>PRK08244 hypothetical protein; Provisional
Probab=97.68 E-value=0.00033 Score=68.73 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=69.1
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------- 242 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------- 242 (382)
..|+|||+|++|+-+|..|.+.|.+|+++++.+....
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 4699999999999999999999999999998765400
Q ss_pred ---------------h----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820 243 ---------------S----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH 303 (382)
Q Consensus 243 ---------------~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~ 303 (382)
. ..++.+.+++.|++++.++++.+++.++++ + .+.+.+. .+ ..++.+|++|.|.|.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v-~v~~~~~-~g-~~~i~a~~vVgADG~ 157 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG--V-EVVVRGP-DG-LRTLTSSYVVGADGA 157 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe--E-EEEEEeC-Cc-cEEEEeCEEEECCCC
Confidence 0 011122334568999999999999877664 1 2344431 12 257899999999998
Q ss_pred CCC
Q 016820 304 EPA 306 (382)
Q Consensus 304 ~p~ 306 (382)
...
T Consensus 158 ~S~ 160 (493)
T PRK08244 158 GSI 160 (493)
T ss_pred ChH
Confidence 763
No 356
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.67 E-value=0.00056 Score=60.80 Aligned_cols=30 Identities=30% Similarity=0.261 Sum_probs=28.1
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
.|||||+|.|||+++..+...|-.|+|+|+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek 40 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEK 40 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEec
Confidence 599999999999999999999888999994
No 357
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.67 E-value=0.00032 Score=74.36 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=66.7
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..+|+|||+|+.|+.+|..|.+.|. .|+|+|.. +.+...+.+.+++.||+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~-----------------------------~~~~~~l~~~L~~~GV~ 367 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR-----------------------------ADVSPEARAEARELGIE 367 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC-----------------------------cchhHHHHHHHHHcCCE
Confidence 4789999999999999999999995 57888821 01122345566788999
Q ss_pred EEEe-eEEEEEecCC--cEEEEE---CCeEEEcCEEEEccCCCCcCC
Q 016820 137 IFTE-TVSKVDFKSR--PFKVFT---DSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~--~~~v~~---~~~~~~~d~lvlA~G~~~~~~ 177 (382)
++.+ .+..+..+++ .+.+.. ++.++.+|.|+++.|..|+..
T Consensus 368 i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~ 414 (985)
T TIGR01372 368 VLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVH 414 (985)
T ss_pred EEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhH
Confidence 9998 6778865543 234432 335699999999999998653
No 358
>PRK06184 hypothetical protein; Provisional
Probab=97.67 E-value=0.00039 Score=68.42 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=67.7
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------- 242 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------- 242 (382)
.+|+|||+|++|+-+|..|.+.|.+|+++++.+.+..
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 4699999999999999999999999999998764400
Q ss_pred -----------------------hH----HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecC
Q 016820 243 -----------------------SK----IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS 295 (382)
Q Consensus 243 -----------------------~~----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D 295 (382)
.+ ..+.+.+.+.|+++++++++.+++.++++ + .+.+... +++..+.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v-~v~~~~~--~~~~~i~a~ 158 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG--V-TARVAGP--AGEETVRAR 158 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--E-EEEEEeC--CCeEEEEeC
Confidence 00 01112234458889999999999877664 1 1233221 234679999
Q ss_pred eEEEeeCCCC
Q 016820 296 GLFFAIGHEP 305 (382)
Q Consensus 296 ~vi~~~G~~p 305 (382)
+||.|.|...
T Consensus 159 ~vVgADG~~S 168 (502)
T PRK06184 159 YLVGADGGRS 168 (502)
T ss_pred EEEECCCCch
Confidence 9999999775
No 359
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.65 E-value=0.0018 Score=66.99 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=63.1
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.++|||||||..|+.+|..+.++|.+ |+++++.. ...++ . ...++ +.+.+.|++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~---------------~~~~~---~--~~~e~-----~~~~~~GV~ 624 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS---------------EEEMP---A--RLEEV-----KHAKEEGIE 624 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC---------------cccCC---C--CHHHH-----HHHHHcCCE
Confidence 47899999999999999999999998 99998420 00111 1 11221 235677999
Q ss_pred EEEe-eEEEEEecC-CcE---EEE-------------------ECCeEEEcCEEEEccCCCCcCC
Q 016820 137 IFTE-TVSKVDFKS-RPF---KVF-------------------TDSKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 137 ~~~~-~v~~i~~~~-~~~---~v~-------------------~~~~~~~~d~lvlA~G~~~~~~ 177 (382)
++.. .+..+..++ +.+ .+. .+...+.+|.||+|+|..|+..
T Consensus 625 i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~ 689 (752)
T PRK12778 625 FLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPL 689 (752)
T ss_pred EEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcc
Confidence 8877 466664332 221 111 0112589999999999998764
No 360
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.65 E-value=0.00055 Score=69.32 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=63.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
..++|+|||+|..|+.+|..+.++|. +|+|+.+.. ...+|. ...++.+ +.+.||
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~---------------~~~mpa-----~~~ei~~-----a~~eGV 376 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT---------------REEMPA-----NRAEIEE-----ALAEGV 376 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC---------------cccCCC-----CHHHHHH-----HHHcCC
Confidence 35799999999999999999999997 599998410 001111 1223322 235699
Q ss_pred EEEEe-eEEEEEecCCcEEEE-----E--------------CC--eEEEcCEEEEccCCCCcCC
Q 016820 136 QIFTE-TVSKVDFKSRPFKVF-----T--------------DS--KSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~~~~~v~-----~--------------~~--~~~~~d~lvlA~G~~~~~~ 177 (382)
+++.. .+.++..+++.+.+. . ++ ..+.+|.||+|+|..|+..
T Consensus 377 ~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ 440 (652)
T PRK12814 377 SLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP 440 (652)
T ss_pred cEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcc
Confidence 99887 466665544432221 0 12 2489999999999988754
No 361
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.64 E-value=0.0001 Score=71.33 Aligned_cols=88 Identities=22% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHhh--cCCEEEEEEeCCCCc---------ch---HH---HHHHhccCCCcEEEcCcee
Q 016820 202 IFRDKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDSFR---------AS---KI---MQNRALTNPKIDVIWNSVV 264 (382)
Q Consensus 202 ~~~~~~v~VvG~G~~a~e~a~~l~~--~g~~v~~~~~~~~~~---------~~---~~---~~~~~l~~~gv~~~~~~~v 264 (382)
...+++|+|||+|+.|+.+|..|.+ .|++|+++++.+.+. .. +. ...+++...+|+++.+..+
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~v 102 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTL 102 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEE
Confidence 3346899999999999999999986 689999999988661 00 11 1124466678888876544
Q ss_pred EEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820 265 LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA 306 (382)
Q Consensus 265 ~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~ 306 (382)
..+ +.+.. ....+|.||+|+|..+.
T Consensus 103 -----g~d------vtl~~------L~~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 103 -----GRD------VSLSE------LRDLYHVVVLAYGAESD 127 (491)
T ss_pred -----Ccc------ccHHH------HhhhCCEEEEecCCCCC
Confidence 111 33322 22469999999999863
No 362
>PRK09126 hypothetical protein; Provisional
Probab=97.64 E-value=0.00047 Score=65.55 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=66.0
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------c-----h------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------A-----S------------------------------ 243 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------~-----~------------------------------ 243 (382)
-+|+|||+|+.|+-+|..|.+.|.+|+++++.+... . .
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999999875310 0 0
Q ss_pred ------------------------------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEe
Q 016820 244 ------------------------------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLK 293 (382)
Q Consensus 244 ------------------------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~ 293 (382)
+.+.+.+.+..|++++.++++.+++.++++ +.+.. .++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-----~~v~~---~~g~~~~ 155 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-----AQVTL---ANGRRLT 155 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-----EEEEE---cCCCEEE
Confidence 000111123457888888888888776653 33332 1225799
Q ss_pred cCeEEEeeCCCCCh
Q 016820 294 VSGLFFAIGHEPAT 307 (382)
Q Consensus 294 ~D~vi~~~G~~p~~ 307 (382)
+|++|.|.|..+..
T Consensus 156 a~~vI~AdG~~S~v 169 (392)
T PRK09126 156 ARLLVAADSRFSAT 169 (392)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999987653
No 363
>PLN02529 lysine-specific histone demethylase 1
Probab=97.61 E-value=8.8e-05 Score=75.01 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=35.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT 102 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~ 102 (382)
..++|+|||||++|+++|..|++.|++|+|+|+ ...+||++.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~----~~~~GG~~~ 200 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEG----RNRPGGRVY 200 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEec----CccCcCcee
Confidence 468999999999999999999999999999994 445555443
No 364
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.61 E-value=0.00053 Score=65.40 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=32.1
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~ 240 (382)
++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 68999999999999999999999999999987754
No 365
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.59 E-value=0.00028 Score=73.31 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=61.6
Q ss_pred CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------chHHHH---HHhccCCCcEEEcCceeEEEE
Q 016820 203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------ASKIMQ---NRALTNPKIDVIWNSVVLEAY 268 (382)
Q Consensus 203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~~~~~~---~~~l~~~gv~~~~~~~v~~i~ 268 (382)
..+++|+|||+|+.|+..|..|.+.|++|+++++.+.+. ...... .+.+.+.||+++++..+ .+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di- 614 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL- 614 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE-
Confidence 357899999999999999999999999999999876431 111111 13455679999988765 12
Q ss_pred ecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820 269 GEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA 306 (382)
Q Consensus 269 ~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~ 306 (382)
.+.. . ....+|.|++|||..+.
T Consensus 615 -----------~le~---L--~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 615 -----------TVEQ---L--KNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -----------Ehhh---h--eeccCCEEEECcCCCCC
Confidence 1111 1 23568999999999854
No 366
>PLN02676 polyamine oxidase
Probab=97.58 E-value=9.6e-05 Score=72.10 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=36.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~ 103 (382)
..+||+|||||++||++|+.|++.|. +|+|+| ....+||.+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE----~~~~~GG~~~~ 68 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILE----ATDRIGGRMRK 68 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEec----CCCCCCCccee
Confidence 45799999999999999999999998 699999 55667776653
No 367
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.58 E-value=0.00063 Score=64.71 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=31.1
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 4579999999999999999999999999999864
No 368
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.56 E-value=0.00011 Score=68.69 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=36.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~~~~ 103 (382)
...+|||||||.||++||.+|.++| .+++|+| ....+||++..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE----a~dRIGGRI~t 63 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILE----ASDRIGGRIHT 63 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEE----eccccCceEee
Confidence 4468999999999999999999775 6899999 77788888664
No 369
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.56 E-value=0.00087 Score=60.78 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=66.7
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------------------------------
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-------------------------------------------- 242 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------- 242 (382)
.|+|||+|+.|+-+|..|.+.|.+|+++++.+....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 589999999999999999999999999998754210
Q ss_pred ------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 243 ------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 243 ------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
...+ .+.+.+.|++++.++++.++..++++ +.+... .+...+.+|++|.|+|...
T Consensus 82 ~~~~~~i~r~~l~~~l-~~~~~~~gv~~~~~~~v~~~~~~~~~-----~~~~~~--~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQL-AERAQEAGAELRLGTTVLDVEIHDDR-----VVVIVR--GGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHH-HHHHHHcCCEEEeCcEEeeEEEeCCE-----EEEEEc--CccEEEEeCEEEECCCcch
Confidence 0112 23344578999999999998776653 333221 2235789999999999864
No 370
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00027 Score=62.92 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=39.7
Q ss_pred CcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCccccccC
Q 016820 329 THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSES 380 (382)
Q Consensus 329 ~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~~~~~ 380 (382)
+..+.||+|++|-..+. ..-..+...|.+|+.|+++...++.+..+++..
T Consensus 330 ~lk~~p~l~fAGQitG~--EGYveSaA~Gllag~naa~~~~g~~~~~~P~tT 379 (439)
T COG1206 330 QLKKRPNLFFAGQITGV--EGYVESAASGLLAGINAARLALGEEPLIPPPTT 379 (439)
T ss_pred hcccCCCcEEeeeeecc--hhhhHHhhhhHHHhhHHHHHhcCCCCCCCCchh
Confidence 34478999999999874 355678889999999999999988876665543
No 371
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.55 E-value=0.00059 Score=63.61 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=29.6
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 237 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~ 237 (382)
.|+|||+|..|+-+|.+|.+.|.+|+++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999988
No 372
>PRK05868 hypothetical protein; Validated
Probab=97.54 E-value=0.0008 Score=63.49 Aligned_cols=93 Identities=17% Similarity=0.280 Sum_probs=65.8
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------h----------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------S---------------------- 243 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------~---------------------- 243 (382)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4799999999999999999999999999998775510 0
Q ss_pred -----------------------HHHHHHhcc---CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820 244 -----------------------KIMQNRALT---NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL 297 (382)
Q Consensus 244 -----------------------~~~~~~~l~---~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v 297 (382)
..+ .+.+. ..|++++++.+++.++.++++ +.+.. .++.++.+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L-~~~l~~~~~~~v~i~~~~~v~~i~~~~~~-----v~v~~---~dg~~~~adlv 152 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDL-VELLYGATQPSVEYLFDDSISTLQDDGDS-----VRVTF---ERAAAREFDLV 152 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHH-HHHHHHhccCCcEEEeCCEEEEEEecCCe-----EEEEE---CCCCeEEeCEE
Confidence 001 11111 357788888888888766543 44433 22246889999
Q ss_pred EEeeCCCCCh
Q 016820 298 FFAIGHEPAT 307 (382)
Q Consensus 298 i~~~G~~p~~ 307 (382)
|-|-|.+...
T Consensus 153 IgADG~~S~v 162 (372)
T PRK05868 153 IGADGLHSNV 162 (372)
T ss_pred EECCCCCchH
Confidence 9999987654
No 373
>PRK06126 hypothetical protein; Provisional
Probab=97.53 E-value=0.0013 Score=65.52 Aligned_cols=99 Identities=18% Similarity=0.299 Sum_probs=70.3
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------hH--------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------SK-------------------- 244 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------~~-------------------- 244 (382)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.... .+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 46799999999999999999999999999987764300 00
Q ss_pred ---------------------------------------HHHHHhc-----cCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820 245 ---------------------------------------IMQNRAL-----TNPKIDVIWNSVVLEAYGEGDKKVLGGLK 280 (382)
Q Consensus 245 ---------------------------------------~~~~~~l-----~~~gv~~~~~~~v~~i~~~~~g~~~~~v~ 280 (382)
...++.| +..++++++++++.+++.++++ +. +.
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~-v~ 163 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG--VT-AT 163 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe--EE-EE
Confidence 0001111 2357899999999999887764 22 44
Q ss_pred EEeccCCceEEEecCeEEEeeCCCCC
Q 016820 281 VKNLVTGQVSDLKVSGLFFAIGHEPA 306 (382)
Q Consensus 281 ~~~~~~~~~~~~~~D~vi~~~G~~p~ 306 (382)
+.+..+++..++.+|++|.|.|....
T Consensus 164 ~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 164 VEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EEECCCCcEEEEEEEEEEecCCcchH
Confidence 44433454467899999999998763
No 374
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.52 E-value=0.00018 Score=70.72 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=69.8
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCC-CCCChHHHHHHHHHHHHHcCcE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP-QGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
...-+|||||.-|+++|..|...|.++.+++ +..+. ..--...--..|+..+.+.|++
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh---------------------~~~~lMerQLD~~ag~lL~~~le~~Gi~ 203 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVH---------------------IAPTLMERQLDRTAGRLLRRKLEDLGIK 203 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEe---------------------ecchHHHHhhhhHHHHHHHHHHHhhcce
Confidence 4557999999999999999999999999998 10110 0001122334566777888999
Q ss_pred EEEee-EEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCC
Q 016820 137 IFTET-VSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 137 ~~~~~-v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~ 177 (382)
++.++ .+.|-.+++...+... +..+.+|.+|+|+|.+|+.-
T Consensus 204 ~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~e 246 (793)
T COG1251 204 VLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDE 246 (793)
T ss_pred eecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccH
Confidence 99884 4445444444455554 45599999999999999764
No 375
>PRK07236 hypothetical protein; Provisional
Probab=97.52 E-value=0.0007 Score=64.26 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=64.5
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-c-------hH---HHHHHh-----------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-A-------SK---IMQNRA----------------------- 250 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-~-------~~---~~~~~~----------------------- 250 (382)
..+|+|||+|..|+.+|..|.+.|.+|+++++.+... . .. ..++++
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 4789999999999999999999999999999876421 0 11 111110
Q ss_pred --------------------c-c-CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820 251 --------------------L-T-NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA 306 (382)
Q Consensus 251 --------------------l-~-~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~ 306 (382)
| + -.+++++.++++++++.++++ +.+.. .++.++.+|+||.|-|....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-----v~v~~---~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR-----VTARF---ADGRRETADLLVGADGGRST 155 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe-----EEEEE---CCCCEEEeCEEEECCCCCch
Confidence 0 0 012457888889999877653 43433 22357899999999886543
No 376
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.51 E-value=0.0015 Score=65.00 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=67.5
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------ 242 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------ 242 (382)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 45799999999999999999999999999987764300
Q ss_pred --------------------hH-----HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820 243 --------------------SK-----IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL 297 (382)
Q Consensus 243 --------------------~~-----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v 297 (382)
.+ .+.+.+.+..++++++++++.+++.++++ ..+.+.+ .+...++.+|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~---v~v~~~~--~~g~~~i~ad~v 177 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDG---VTLTVET--PDGPYTLEADWV 177 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE---EEEEEEC--CCCcEEEEeCEE
Confidence 00 00111112246889899999999887664 1133332 122246899999
Q ss_pred EEeeCCCCCh
Q 016820 298 FFAIGHEPAT 307 (382)
Q Consensus 298 i~~~G~~p~~ 307 (382)
|.|.|.....
T Consensus 178 VgADG~~S~v 187 (547)
T PRK08132 178 IACDGARSPL 187 (547)
T ss_pred EECCCCCcHH
Confidence 9999977643
No 377
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.51 E-value=0.00012 Score=70.15 Aligned_cols=197 Identities=17% Similarity=0.127 Sum_probs=109.6
Q ss_pred cccEEEECCcH-HHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 58 KTKVCIIGSGP-AAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 58 ~~~vvIIGaG~-aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..+.+++|.++ .+...|..+..-+- -+.. .++ ....+|.+-.-+....+...++...+.....
T Consensus 5 ~~~e~~~~~~~~~a~~~a~rCl~C~~--~C~~-----------~cp---~~~~IP~~~~lv~~g~~~~a~~~i~~tn~~p 68 (457)
T COG0493 5 DFREAVVGSGPEAAIYEAARCLDCGD--PCIT-----------GCP---VHNDIPEPIGLVREGVDHEAIKLIHKTNNLP 68 (457)
T ss_pred cceeeecCCCHHHHHHHHHHHHcCCC--cccc-----------CCc---CCCcCCCHHHHHhcCCcHHHHHHHHHhCCCc
Confidence 46889999999 77777777654432 1111 111 1112222211111111333344444444444
Q ss_pred EEEeeEEEEE--ecCCcEEEEECCeEEEcCEEEEccCCCCcCC-CCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcC
Q 016820 137 IFTETVSKVD--FKSRPFKVFTDSKSVLADTVIVATGAVAKKL-QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGG 213 (382)
Q Consensus 137 ~~~~~v~~i~--~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~ 213 (382)
-++++|.-.. -+.. .++..++..+.++.|..+.|...... .+++... . ...+++|+|||+
T Consensus 69 ~~~gRvcp~~~~ceg~-cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~--------------~--~~tg~~VaviGa 131 (457)
T COG0493 69 AITGRVCPLGNLCEGA-CVLGIEELPVNIGALERAIGDKADREGWIPGELP--------------G--SRTGKKVAVIGA 131 (457)
T ss_pred cccCccCCCCCceeee-eeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCC--------------C--CCCCCEEEEECC
Confidence 4444433222 1111 11111345577788888877653221 1222210 0 224589999999
Q ss_pred CchHHHHHHHHhhcCCEEEEEEeCCCCc-----------c----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820 214 GDSAMEEANFLTKYGSKVYIIHRRDSFR-----------A----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG 278 (382)
Q Consensus 214 G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~ 278 (382)
|+.++.+|..|.+.|+.||++.+.+... . .... -+.|++.|++|+.+.++-. +
T Consensus 132 GPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~-i~~l~~~Gv~~~~~~~vG~----~------- 199 (457)
T COG0493 132 GPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRR-LELLERSGVEFKLNVRVGR----D------- 199 (457)
T ss_pred CchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHH-HHHHHHcCeEEEEcceECC----c-------
Confidence 9999999999999999999998887661 1 1122 2467788999998876621 1
Q ss_pred EEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 279 LKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 279 v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
++++. ..-.+|.+++++|..-
T Consensus 200 it~~~------L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 200 ITLEE------LLKEYDAVFLATGAGK 220 (457)
T ss_pred CCHHH------HHHhhCEEEEeccccC
Confidence 22222 2234599999999853
No 378
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.50 E-value=0.001 Score=66.10 Aligned_cols=98 Identities=18% Similarity=0.339 Sum_probs=69.3
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------------------------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------------------------------------------- 241 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~------------------------------------------- 241 (382)
..+|+|||+|++|+-+|..|.+.|.+|+++++.+.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 4579999999999999999999999999999876430
Q ss_pred ----ch----------------HHHHHHh----cc-CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820 242 ----AS----------------KIMQNRA----LT-NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296 (382)
Q Consensus 242 ----~~----------------~~~~~~~----l~-~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~ 296 (382)
.. +...++. +. ..|+++++++++++++.++++ + .+++++. +++..++.+|+
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v-~v~~~~~-~G~~~~i~ad~ 165 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--V-TVTLTDA-DGQRETVRARY 165 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--E-EEEEEcC-CCCEEEEEEEE
Confidence 00 0000111 22 248999999999999887765 1 2344321 24346799999
Q ss_pred EEEeeCCCCC
Q 016820 297 LFFAIGHEPA 306 (382)
Q Consensus 297 vi~~~G~~p~ 306 (382)
||-|.|....
T Consensus 166 vVgADG~~S~ 175 (538)
T PRK06183 166 VVGCDGANSF 175 (538)
T ss_pred EEecCCCchh
Confidence 9999998764
No 379
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.50 E-value=0.00023 Score=74.56 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=62.7
Q ss_pred CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------chHHHH---HHhccCCCcEEEcCceeEEEEe
Q 016820 204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------ASKIMQ---NRALTNPKIDVIWNSVVLEAYG 269 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~~~~~~---~~~l~~~gv~~~~~~~v~~i~~ 269 (382)
.+++|+|||+|+.|+.+|.+|.+.|++|+++++.+.+. ..+.+. -+.+++.||+++++..+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 47999999999999999999999999999999876541 112111 134667899998886541
Q ss_pred cCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC-CCh
Q 016820 270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE-PAT 307 (382)
Q Consensus 270 ~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~-p~~ 307 (382)
.+ +.+++ .....+|.|++|||.. |..
T Consensus 381 -~d------it~~~-----l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 381 -KT------ATLED-----LKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred -cE------EeHHH-----hccccCCEEEEeCCCCCCCc
Confidence 11 33322 1235799999999994 543
No 380
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.50 E-value=0.00014 Score=74.07 Aligned_cols=43 Identities=28% Similarity=0.439 Sum_probs=37.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
..++|+|||||++|+++|+.|.+.|++|+|+| +...+||++..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E----~~~r~GGr~~t 279 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLE----GRARPGGRVKT 279 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEe----ccccCCCcccc
Confidence 45899999999999999999999999999999 55567776543
No 381
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.003 Score=56.87 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=73.2
Q ss_pred CCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHH
Q 016820 45 PKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMD 124 (382)
Q Consensus 45 ~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (382)
....+..+.+--.-+||+|||||-+|+++|+.|+-.=..|+|+| | ...+..+ +
T Consensus 341 VayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllE---------------------F---~~eLkAD---~ 393 (520)
T COG3634 341 VAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE---------------------F---APELKAD---A 393 (520)
T ss_pred eeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeee---------------------c---chhhhhH---H
Confidence 33344444444456899999999999999999998878999999 1 0111122 2
Q ss_pred HHHHHHHH-cCcEEEEe-eEEEEEecCCcE-----EEEECC--eEEEcCEEEEccCCCCcCCCCCCCc
Q 016820 125 RCRNQSLR-FGTQIFTE-TVSKVDFKSRPF-----KVFTDS--KSVLADTVIVATGAVAKKLQFPGSD 183 (382)
Q Consensus 125 ~~~~~~~~-~gi~~~~~-~v~~i~~~~~~~-----~v~~~~--~~~~~d~lvlA~G~~~~~~~~~g~~ 183 (382)
-+++.+.. .+++++.+ .-++|.-+.+.+ .-+..+ ..+.-+-+++-.|..|+...+.|.-
T Consensus 394 VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~v 461 (520)
T COG3634 394 VLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAV 461 (520)
T ss_pred HHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchh
Confidence 34444444 37888887 566676554432 222222 2366788999999999887776653
No 382
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.49 E-value=0.00048 Score=66.01 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCCcEEEEcCCchHHHHHHHHh-hcCCEEEEEEeCCCCc---------c---hHHH---HHHhccCCCcEEEcCceeEEE
Q 016820 204 RDKPLAVIGGGDSAMEEANFLT-KYGSKVYIIHRRDSFR---------A---SKIM---QNRALTNPKIDVIWNSVVLEA 267 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~l~-~~g~~v~~~~~~~~~~---------~---~~~~---~~~~l~~~gv~~~~~~~v~~i 267 (382)
.+++|+|||+|+.|+.+|..|. +.+++|+++++.+.+. . .+.+ ....+...+++++.+..+-
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG-- 115 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG-- 115 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec--
Confidence 4689999999999999999764 6799999999998771 0 1111 1123445677766332221
Q ss_pred EecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820 268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA 306 (382)
Q Consensus 268 ~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~ 306 (382)
.+ +.++ ...-.+|.||+++|..+.
T Consensus 116 ---~D------vt~e------eL~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 116 ---VD------LKME------ELRNHYNCVIFCCGASEV 139 (506)
T ss_pred ---Cc------cCHH------HHHhcCCEEEEEcCCCCC
Confidence 11 1111 122378999999998864
No 383
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.48 E-value=0.0016 Score=63.33 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=63.1
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.++++|||+|..|+.+|..+.++|. +|+|+++.. ...++. ...++ +.+.+.|++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~---------------~~~~~~-----~~~e~-----~~~~~~GV~ 336 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD---------------EANMPG-----SRREV-----ANAREEGVE 336 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC---------------cccCCC-----CHHHH-----HHHHhcCCE
Confidence 4789999999999999999999996 699998410 000111 11222 334677999
Q ss_pred EEEe-eEEEEEecC-CcE---EEE-E------------------CCeEEEcCEEEEccCCCCcC
Q 016820 137 IFTE-TVSKVDFKS-RPF---KVF-T------------------DSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 137 ~~~~-~v~~i~~~~-~~~---~v~-~------------------~~~~~~~d~lvlA~G~~~~~ 176 (382)
++.+ .+..+..++ +.+ ++. + +...+.+|.||+|+|..|+.
T Consensus 337 ~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 400 (467)
T TIGR01318 337 FLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHA 400 (467)
T ss_pred EEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCc
Confidence 9888 577775432 222 121 0 11358999999999999874
No 384
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.47 E-value=0.00016 Score=70.41 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=35.1
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
+|+|||||++|+++|+.|++.|++|+|+| +...+||.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E----~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYE----SRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEE----ecCCCCceeee
Confidence 58999999999999999999999999999 55667776554
No 385
>PRK06753 hypothetical protein; Provisional
Probab=97.47 E-value=0.00085 Score=63.31 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=31.6
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~ 240 (382)
+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 6999999999999999999999999999988754
No 386
>PRK06185 hypothetical protein; Provisional
Probab=97.45 E-value=0.0016 Score=62.26 Aligned_cols=97 Identities=16% Similarity=0.320 Sum_probs=67.2
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------c----------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------A---------------------- 242 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------~---------------------- 242 (382)
..+|+|||+|++|+-+|..|.+.|.+|+++++.+.+. .
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 4679999999999999999999999999999865320 0
Q ss_pred -------------------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820 243 -------------------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL 297 (382)
Q Consensus 243 -------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v 297 (382)
...+.+.+.+..|++++.++++.++..++++ +.++.+.. .+....+.+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~--v~~v~~~~--~~g~~~i~a~~v 161 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGR--VTGVRART--PDGPGEIRADLV 161 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCE--EEEEEEEc--CCCcEEEEeCEE
Confidence 0011111112347888888888888776543 33445543 122247899999
Q ss_pred EEeeCCCC
Q 016820 298 FFAIGHEP 305 (382)
Q Consensus 298 i~~~G~~p 305 (382)
|.|.|...
T Consensus 162 I~AdG~~S 169 (407)
T PRK06185 162 VGADGRHS 169 (407)
T ss_pred EECCCCch
Confidence 99999875
No 387
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.45 E-value=0.0012 Score=62.43 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=29.6
Q ss_pred cEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRD 238 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~ 238 (382)
.|+|||+|+.|+-+|..|.+.| .+|+++++.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 4899999999999999999999 9999998765
No 388
>PRK07588 hypothetical protein; Provisional
Probab=97.44 E-value=0.0012 Score=62.80 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=31.0
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~ 240 (382)
+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 6999999999999999999999999999877654
No 389
>PRK07190 hypothetical protein; Provisional
Probab=97.43 E-value=0.001 Score=65.03 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=65.9
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------ch----------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------AS---------------------- 243 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------~~---------------------- 243 (382)
..|+|||+|++|+-+|..|.+.|.+|.++++.+... ..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 479999999999999999999999999998776430 00
Q ss_pred ----------------------HH----HHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820 244 ----------------------KI----MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL 297 (382)
Q Consensus 244 ----------------------~~----~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v 297 (382)
+. ++.+.+++.|++++++++++++..++++ +.+.. ..+ .++.++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-----v~v~~-~~g--~~v~a~~v 157 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-----CLTTL-SNG--ERIQSRYV 157 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-----eEEEE-CCC--cEEEeCEE
Confidence 00 0011233468889999999999887764 33332 113 47899999
Q ss_pred EEeeCCCC
Q 016820 298 FFAIGHEP 305 (382)
Q Consensus 298 i~~~G~~p 305 (382)
|.|.|.+.
T Consensus 158 VgADG~~S 165 (487)
T PRK07190 158 IGADGSRS 165 (487)
T ss_pred EECCCCCH
Confidence 99999865
No 390
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.43 E-value=0.00021 Score=71.06 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=32.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM 91 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~ 91 (382)
.+.||||||+|.+|++||..+++.|.+|+||||..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46899999999999999999999999999999643
No 391
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.42 E-value=0.0022 Score=61.27 Aligned_cols=136 Identities=20% Similarity=0.224 Sum_probs=84.7
Q ss_pred CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----------------------------------------
Q 016820 204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----------------------------------------- 242 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----------------------------------------- 242 (382)
..++++|||+|++|+-.|..|.+.|.+++++.|.+.+..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 368999999999999999999999999999998887610
Q ss_pred ---hH-H---HHHHhccCCCc--EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC--CChhhhc
Q 016820 243 ---SK-I---MQNRALTNPKI--DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE--PATKFVD 311 (382)
Q Consensus 243 ---~~-~---~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~--p~~~~~~ 311 (382)
.. . .++...+..++ .+..++.+.+++...+|+ ..|...+.... ..+.-||.|++|+|.- |+.+...
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk--W~V~~~~~~~~-~~~~ifd~VvVctGh~~~P~~P~~~ 161 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK--WRVTTKDNGTQ-IEEEIFDAVVVCTGHYVEPRIPQIP 161 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc--eeEEEecCCcc-eeEEEeeEEEEcccCcCCCCCCcCC
Confidence 00 1 11223334443 466678788888876443 33555442211 3567899999999998 5555443
Q ss_pred ccccccC-CCceeeCCCCCcC----CCCceEEecccCC
Q 016820 312 GQLDLHS-DGYIITKPGTTHT----SVPGVFAAGDVQD 344 (382)
Q Consensus 312 ~~~~~~~-~g~i~vd~~~~~t----~~~~vya~GD~~~ 344 (382)
+...+. .|.+.- .+.++. ....|.++|--.+
T Consensus 162 -g~~~~~f~G~~iH-S~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 162 -GPGIESFKGKIIH-SHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred -CCchhhcCCccee-hhhccCcccccCceEEEECCCcc
Confidence 321222 222211 112221 3467888887654
No 392
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.42 E-value=0.00028 Score=65.42 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=58.9
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCC----CCCcceecCCCcccCCCCC---------------
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDI----APGGQLTTTSDVENFPGFP--------------- 114 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~----~~gg~~~~~~~~~~~~~~~--------------- 114 (382)
...++|+|||||.++.+++..|.+.+. +|+++-+...... .....+..+.....|...|
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~n 267 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTN 267 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGT
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhc
Confidence 456899999999999999999999874 7999985321110 1111111110000010111
Q ss_pred -CCCChHHHHHHH------HHHHHHcCcEEEEe-eEEEEEecCC-cEEEEECC------eEEEcCEEEEccCC
Q 016820 115 -QGILGGDLMDRC------RNQSLRFGTQIFTE-TVSKVDFKSR-PFKVFTDS------KSVLADTVIVATGA 172 (382)
Q Consensus 115 -~~~~~~~~~~~~------~~~~~~~gi~~~~~-~v~~i~~~~~-~~~v~~~~------~~~~~d~lvlA~G~ 172 (382)
..++ .++.+.+ ++...+..+.++.+ +|+++...++ .+.+.... ..+.+|.||+|||-
T Consensus 268 y~~i~-~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 268 YGGID-PDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SSEB--HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred CCCCC-HHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 1112 2222222 11222335777766 6889988874 77776532 45899999999994
No 393
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0025 Score=57.94 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=76.1
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC-------------c------chHHHH---HHhccCCCcEEEcCce
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF-------------R------ASKIMQ---NRALTNPKIDVIWNSV 263 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~-------------~------~~~~~~---~~~l~~~gv~~~~~~~ 263 (382)
..|+|||+|+.|+-.|-++.+.+.+++++...... + ....+. ++.....++++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 46999999999999999999999774444333211 0 011221 2334457888876 66
Q ss_pred eEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCC--c-eeeCCCCCcCCCCceEEec
Q 016820 264 VLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDG--Y-IITKPGTTHTSVPGVFAAG 340 (382)
Q Consensus 264 v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g--~-i~vd~~~~~t~~~~vya~G 340 (382)
+.+++..++. +.+.+ +++. +.++.||+|||..+...-+.....+-..| + ..+|. ++. .++|.++|
T Consensus 83 v~~v~~~~~~-----F~v~t---~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~--~k~v~ViG 150 (305)
T COG0492 83 VEKVELEGGP-----FKVKT---DKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFK--GKDVVVIG 150 (305)
T ss_pred EEEEeecCce-----EEEEE---CCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-ccc--CCeEEEEc
Confidence 7777776631 55554 3334 99999999999988665332111222222 2 22333 232 34888888
Q ss_pred ccC
Q 016820 341 DVQ 343 (382)
Q Consensus 341 D~~ 343 (382)
.-.
T Consensus 151 gG~ 153 (305)
T COG0492 151 GGD 153 (305)
T ss_pred CCH
Confidence 753
No 394
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.41 E-value=0.0012 Score=62.88 Aligned_cols=92 Identities=16% Similarity=0.059 Sum_probs=64.2
Q ss_pred cEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCCcc----------------------h-------------------
Q 016820 207 PLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSFRA----------------------S------------------- 243 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~~~----------------------~------------------- 243 (382)
+|+|||+|+.|+-+|..|.+.| .+|+++++.+.... .
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 89999998653100 0
Q ss_pred -------------------------------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820 244 -------------------------------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL 292 (382)
Q Consensus 244 -------------------------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~ 292 (382)
...+.+.+.+.|++++.++++++++.++++ +.+.. .++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-----v~v~~---~~g~~~ 154 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG-----VTVTL---SDGSVL 154 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-----EEEEE---CCCCEE
Confidence 000011233457888888888888776653 33433 223568
Q ss_pred ecCeEEEeeCCCCC
Q 016820 293 KVSGLFFAIGHEPA 306 (382)
Q Consensus 293 ~~D~vi~~~G~~p~ 306 (382)
.+|+||.|.|..+.
T Consensus 155 ~ad~vI~AdG~~S~ 168 (403)
T PRK07333 155 EARLLVAADGARSK 168 (403)
T ss_pred EeCEEEEcCCCChH
Confidence 99999999998754
No 395
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.41 E-value=0.0003 Score=66.68 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=63.7
Q ss_pred chHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHh--ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820 215 DSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRA--LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL 292 (382)
Q Consensus 215 ~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~ 292 (382)
..++|+...|.+.+.+=.+++......-+..-..-+ ..+.|-.+..+.++.++..+++|+ +.++++.+..+|++.++
T Consensus 196 ~~alE~fPmL~~~~L~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~k-v~Ga~~rD~iTG~e~~I 274 (680)
T KOG0042|consen 196 KEALEIFPMLRKDNLKGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGK-VIGARARDHITGKEYEI 274 (680)
T ss_pred HHHHHhCccccccCceeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCc-eeeeEEEEeecCcEEEE
Confidence 467888888888776666665555443222211111 234677777777888888877774 66788888888988999
Q ss_pred ecCeEEEeeCCCCCh
Q 016820 293 KVSGLFFAIGHEPAT 307 (382)
Q Consensus 293 ~~D~vi~~~G~~p~~ 307 (382)
.+..||-+||--.+.
T Consensus 275 ~Ak~VVNATGpfsDs 289 (680)
T KOG0042|consen 275 RAKVVVNATGPFSDS 289 (680)
T ss_pred EEEEEEeCCCCccHH
Confidence 999999999866543
No 396
>PRK07045 putative monooxygenase; Reviewed
Probab=97.40 E-value=0.0015 Score=62.05 Aligned_cols=94 Identities=16% Similarity=0.256 Sum_probs=65.6
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----------h--------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----------S-------------------------------- 243 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----------~-------------------------------- 243 (382)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. .
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999987774400 0
Q ss_pred ------------------------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEE
Q 016820 244 ------------------------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFF 299 (382)
Q Consensus 244 ------------------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~ 299 (382)
+.+.+++-...|+++++++++..++.++++. +..+++.+ + .++.+|++|-
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~~~v~~~~---g--~~~~~~~vIg 159 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGT-VTSVTLSD---G--ERVAPTVLVG 159 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCc-EEEEEeCC---C--CEEECCEEEE
Confidence 0000111123578888899999998876542 22344332 3 4688999998
Q ss_pred eeCCCC
Q 016820 300 AIGHEP 305 (382)
Q Consensus 300 ~~G~~p 305 (382)
|.|...
T Consensus 160 ADG~~S 165 (388)
T PRK07045 160 ADGARS 165 (388)
T ss_pred CCCCCh
Confidence 888775
No 397
>PLN02463 lycopene beta cyclase
Probab=97.38 E-value=0.0013 Score=63.30 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=63.6
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc------c-------------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------A------------------------------------- 242 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~------~------------------------------------- 242 (382)
-+|+|||+|+.|+.+|..|.+.|.+|.++++.+... .
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 479999999999999999999999999998765210 0
Q ss_pred ----h----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820 243 ----S----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA 306 (382)
Q Consensus 243 ----~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~ 306 (382)
. ..+. +.+.+.|++++ ..++.+++.++++ +.+.. .++..+.+|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll-~~~~~~GV~~~-~~~V~~I~~~~~~-----~~V~~---~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKML-ERCIANGVQFH-QAKVKKVVHEESK-----SLVVC---DDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHH-HHHhhcCCEEE-eeEEEEEEEcCCe-----EEEEE---CCCCEEEcCEEEECcCCCcC
Confidence 0 0111 11234688886 5688888877653 33332 22357999999999987653
No 398
>PLN02487 zeta-carotene desaturase
Probab=97.37 E-value=0.00029 Score=69.64 Aligned_cols=42 Identities=29% Similarity=0.344 Sum_probs=36.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT 102 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~ 102 (382)
..++|+|||||++|+++|+.|++.|++|+|+| .....||.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E----~~~~~gG~~~ 115 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE----SRPFIGGKVG 115 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEe----cCCCCCCcee
Confidence 34699999999999999999999999999999 5556677654
No 399
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.37 E-value=0.00025 Score=65.36 Aligned_cols=43 Identities=30% Similarity=0.409 Sum_probs=37.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCe--EEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKP--ILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v--~lie~~~~~~~~~gg~~~~ 103 (382)
..++|+|||||.+||++|++|++++.++ +|+| .+...||.+..
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~E----a~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFE----ASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEe----cCCcccceeee
Confidence 3479999999999999999999997665 5599 77788998876
No 400
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.37 E-value=0.0023 Score=65.10 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=62.0
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
.++|+|||||..|+.+|..+.++|. +|+++.+. ....++. ...+ .+.+.+.|++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~---------------~~~~~~~-----~~~e-----~~~~~~~Gv~ 522 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR---------------DEANMPG-----SKKE-----VKNAREEGAN 522 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec---------------CCCCCCC-----CHHH-----HHHHHHcCCe
Confidence 4689999999999999999999997 69998831 0001111 1111 2345677999
Q ss_pred EEEe-eEEEEEec-CCcE---EEE-E----------------CC--eEEEcCEEEEccCCCCcC
Q 016820 137 IFTE-TVSKVDFK-SRPF---KVF-T----------------DS--KSVLADTVIVATGAVAKK 176 (382)
Q Consensus 137 ~~~~-~v~~i~~~-~~~~---~v~-~----------------~~--~~~~~d~lvlA~G~~~~~ 176 (382)
++.+ .+.++..+ ++.+ .+. . .+ ..+.+|.||+|+|..|+.
T Consensus 523 ~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 586 (654)
T PRK12769 523 FEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHG 586 (654)
T ss_pred EEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCc
Confidence 9887 56666532 2222 211 0 11 259999999999998874
No 401
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.37 E-value=0.0018 Score=61.51 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=68.2
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC-CCC--------------------cc----------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR-DSF--------------------RA---------------------- 242 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~-~~~--------------------~~---------------------- 242 (382)
.+|+|||+|+.|+-+|..|.+.|.+|+++++. ..+ ..
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR 82 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence 57999999999999999999999999999998 222 00
Q ss_pred ------------------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEE
Q 016820 243 ------------------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLF 298 (382)
Q Consensus 243 ------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi 298 (382)
...+.+...+..+|+++.++.++.++.++++ +. ++++. ++ .++.+|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~--v~-v~l~~--dG--~~~~a~llV 155 (387)
T COG0654 83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG--VT-VTLSF--DG--ETLDADLLV 155 (387)
T ss_pred eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc--eE-EEEcC--CC--cEEecCEEE
Confidence 0111122223455999999999999998864 22 44441 24 489999999
Q ss_pred EeeCCCC
Q 016820 299 FAIGHEP 305 (382)
Q Consensus 299 ~~~G~~p 305 (382)
-|-|...
T Consensus 156 gADG~~S 162 (387)
T COG0654 156 GADGANS 162 (387)
T ss_pred ECCCCch
Confidence 9998664
No 402
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.34 E-value=0.0019 Score=61.69 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=30.5
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 369999999999999999999999999999865
No 403
>PLN02612 phytoene desaturase
Probab=97.33 E-value=0.00029 Score=70.17 Aligned_cols=43 Identities=40% Similarity=0.505 Sum_probs=36.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
.+++|+|||||++|+++|+.|.+.|++|+|+| ....+||....
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e----~~~~~gG~~~s 134 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLE----ARDVLGGKVAA 134 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEe----cCCCCCCccee
Confidence 45789999999999999999999999999999 44556776543
No 404
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.33 E-value=0.0021 Score=60.90 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=30.4
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
.|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 489999999999999999999999999998863
No 405
>PRK08013 oxidoreductase; Provisional
Probab=97.33 E-value=0.0021 Score=61.31 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.1
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999997654
No 406
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.32 E-value=0.00022 Score=68.56 Aligned_cols=93 Identities=19% Similarity=0.377 Sum_probs=28.0
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------------------------------chH-----------
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------------------------------ASK----------- 244 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------------------------------~~~----------- 244 (382)
.|+|||+|+.|+-.|...++.|.+|.++++.+.+. ...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 48999999999999999999999999999888661 000
Q ss_pred -------------HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820 245 -------------IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH 303 (382)
Q Consensus 245 -------------~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~ 303 (382)
....+++.+.|+++++++.+.++..+++ .+.+|.+.+.. + ..++.++.+|.|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~--~i~~V~~~~~~-g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGG--RITGVIVETKS-G-RKEIRAKVFIDATGD 148 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc--ccccccccccc-c-ccccccccccccccc
Confidence 0112345567999999999999998753 37778887533 3 578999999999994
No 407
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.30 E-value=0.00021 Score=65.19 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCC-ceEEEecCeEEEeeCCCCChhhhc-ccc
Q 016820 245 IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTG-QVSDLKVSGLFFAIGHEPATKFVD-GQL 314 (382)
Q Consensus 245 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~-~~~~~~~D~vi~~~G~~p~~~~~~-~~~ 314 (382)
..+..++++.|++++++++|++|..+.++...++|++.+.... ....+..+.||+|.|.--.+.+|. +++
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 3345667777999999999999977655556888999875433 235677899999999876665553 444
No 408
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.29 E-value=0.001 Score=64.48 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=55.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
..++++|+|+|.+|+++|..|++.|++|+++|+. ..+.+.+. .+.+.+.+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~---------------------------~~~~~~~~-~~~l~~~~~~ 55 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK---------------------------EEDQLKEA-LEELGELGIE 55 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC---------------------------chHHHHHH-HHHHHhcCCE
Confidence 3478999999999999999999999999999931 01122222 2334566777
Q ss_pred EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820 137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ 178 (382)
Q Consensus 137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~ 178 (382)
++.+...+ ...-.+|.||+++|..+..|.
T Consensus 56 ~~~~~~~~-------------~~~~~~d~vv~~~g~~~~~~~ 84 (450)
T PRK14106 56 LVLGEYPE-------------EFLEGVDLVVVSPGVPLDSPP 84 (450)
T ss_pred EEeCCcch-------------hHhhcCCEEEECCCCCCCCHH
Confidence 65553322 011247999999998776653
No 409
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.28 E-value=0.0032 Score=59.75 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=31.5
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 34799999999999999999999999999998754
No 410
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.28 E-value=0.0023 Score=60.69 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=30.3
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
.+|+|||+|+.|.-+|..|.+.|.+|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 369999999999999999999999999999764
No 411
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.27 E-value=0.00084 Score=65.66 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=62.4
Q ss_pred CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE
Q 016820 203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK 282 (382)
Q Consensus 203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~ 282 (382)
..+++++|+|+|.+|+++|..|.+.|.+|+++++.+... ...+ .+.+++.|++++.+..+.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~-~~~~-~~~l~~~gv~~~~~~~~~----------------- 74 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDER-HRAL-AAILEALGATVRLGPGPT----------------- 74 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhh-hHHH-HHHHHHcCCEEEECCCcc-----------------
Confidence 347899999999999999999999999999998765422 2222 244667798887664321
Q ss_pred eccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820 283 NLVTGQVSDLKVSGLFFAIGHEPATKFVD 311 (382)
Q Consensus 283 ~~~~~~~~~~~~D~vi~~~G~~p~~~~~~ 311 (382)
....+|.||.++|..|+.+++.
T Consensus 75 -------~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 -------LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred -------ccCCCCEEEECCCcCCCCHHHH
Confidence 1245899999999999988654
No 412
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.24 E-value=0.0035 Score=59.58 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=30.8
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3579999999999999999999999999998764
No 413
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.23 E-value=0.003 Score=60.75 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=30.9
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 4799999999999999999999999999987653
No 414
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.23 E-value=0.003 Score=60.37 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=30.1
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 237 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~ 237 (382)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 57999999999999999999999999999985
No 415
>PLN03000 amine oxidase
Probab=97.23 E-value=0.00044 Score=70.70 Aligned_cols=43 Identities=33% Similarity=0.452 Sum_probs=37.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
...+|+|||||++|+.+|..|.+.|++|+|+| ....+||++..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE----~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLE----GRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEE----ccCcCCCCcce
Confidence 35899999999999999999999999999999 55566776543
No 416
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.23 E-value=0.00035 Score=66.98 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=38.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
..+||+|||+|.+|+.+|..|++.|.+|.++| .+...||.+..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD----~n~~yGG~~as 45 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMD----RNPYYGGESAS 45 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEec----CCCCcCccccc
Confidence 35899999999999999999999999999999 66677877653
No 417
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.22 E-value=0.0033 Score=59.75 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=29.7
Q ss_pred CcEEEEcCCchHHHHHHHHhhc---CCEEEEEEeC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKY---GSKVYIIHRR 237 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~---g~~v~~~~~~ 237 (382)
.+|+|||+|+.|+-+|..|.+. |.+|+++++.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4799999999999999999998 9999999984
No 418
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.22 E-value=0.0033 Score=59.40 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=29.2
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 237 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~ 237 (382)
+|+|||+|+.|+-+|..|.+.|.+|+++++.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 5999999999999999999999999999975
No 419
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.22 E-value=0.0026 Score=60.60 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=67.5
Q ss_pred EEECCcHHHHHHH-HHHH----HcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820 62 CIIGSGPAAHTAA-IYAA----RAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ 136 (382)
Q Consensus 62 vIIGaG~aGl~~A-~~l~----~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 136 (382)
+|++-|..|++.+ ..++ ++|.+|++++. .|..+...++.+.+.+.+++.|++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~-----------------------~ppslpG~rL~~aL~~~l~~~Gv~ 275 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPT-----------------------LPPSVPGLRLQNALRRAFERLGGR 275 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCC-----------------------CCCCCchHHHHHHHHHHHHhCCCE
Confidence 7789999999998 5554 46999999982 122334457888899999999999
Q ss_pred EEEe-eEEEEEecCCcEEE-EE-CC--eEEEcCEEEEccCCC
Q 016820 137 IFTE-TVSKVDFKSRPFKV-FT-DS--KSVLADTVIVATGAV 173 (382)
Q Consensus 137 ~~~~-~v~~i~~~~~~~~v-~~-~~--~~~~~d~lvlA~G~~ 173 (382)
++.+ +|.+++.+++.+.. .+ ++ ..+.+|.+|+|+|+.
T Consensus 276 I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 276 IMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred EEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 9998 79999877665543 22 22 348999999999985
No 420
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.20 E-value=0.0036 Score=59.37 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.1
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4699999999999999999999999999987754
No 421
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.20 E-value=0.0039 Score=65.31 Aligned_cols=94 Identities=23% Similarity=0.240 Sum_probs=59.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc-CC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA-EL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG 134 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 134 (382)
..++|+|||||..|+.+|..+.+. |. +|+++.+.. ....+. ...++.+ +.+.|
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~---------------~~~Mpa-----~~eEl~~-----aleeG 719 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT---------------KRYMPA-----SREELEE-----ALEDG 719 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC---------------cccccc-----CHHHHHH-----HHHcC
Confidence 457999999999999999999887 75 799998420 001111 1223222 22468
Q ss_pred cEEEEe-eEEEEEecCCcEEE-----------------EECC-eEEEcCEEEEccCCCCcCC
Q 016820 135 TQIFTE-TVSKVDFKSRPFKV-----------------FTDS-KSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 135 i~~~~~-~v~~i~~~~~~~~v-----------------~~~~-~~~~~d~lvlA~G~~~~~~ 177 (382)
++++.. .+..++ ++.+.+ ..+. .++.+|.||+|+|..|+..
T Consensus 720 Ve~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~ 779 (1012)
T TIGR03315 720 VDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTD 779 (1012)
T ss_pred CEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChH
Confidence 988776 455554 122211 1111 2589999999999998654
No 422
>PRK13984 putative oxidoreductase; Provisional
Probab=97.19 E-value=0.0036 Score=63.07 Aligned_cols=98 Identities=21% Similarity=0.198 Sum_probs=59.5
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCC------CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHH
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAEL------KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSL 131 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~------~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
.++|+|||||..|+.+|..|.+++. +|+++... .....++. ...++.+ +.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~-----------------r~~~~~~~--~~~e~~~-----~~ 473 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLE-----------------RTFEEMPA--DMEEIEE-----GL 473 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccc-----------------cCcccCCC--CHHHHHH-----HH
Confidence 4799999999999999999998853 66776410 00111111 1222222 23
Q ss_pred HcCcEEEEe-eEEEEEecCCcEE---EE-----------------E-CCeEEEcCEEEEccCCCCcCCCC
Q 016820 132 RFGTQIFTE-TVSKVDFKSRPFK---VF-----------------T-DSKSVLADTVIVATGAVAKKLQF 179 (382)
Q Consensus 132 ~~gi~~~~~-~v~~i~~~~~~~~---v~-----------------~-~~~~~~~d~lvlA~G~~~~~~~~ 179 (382)
+.|++++.+ .+..+..+++.+. +. . +...+.+|.||+|+|..|+...+
T Consensus 474 ~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l 543 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYL 543 (604)
T ss_pred HcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhh
Confidence 569998876 3545543332221 11 0 12359999999999999875543
No 423
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.18 E-value=0.00066 Score=66.32 Aligned_cols=86 Identities=22% Similarity=0.326 Sum_probs=61.4
Q ss_pred CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------chHHHH---HHhccCCCcEEEcCceeEEEEe
Q 016820 204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------ASKIMQ---NRALTNPKIDVIWNSVVLEAYG 269 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~~~~~~---~~~l~~~gv~~~~~~~v~~i~~ 269 (382)
.+++++|||+|+.|+.+|..|.+.|.+|+++.+.+.+. ...... .+.+++.||+++.++.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV--- 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC---
Confidence 46899999999999999999999999999998776431 111121 2345678999998887631
Q ss_pred cCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC-CC
Q 016820 270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE-PA 306 (382)
Q Consensus 270 ~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~-p~ 306 (382)
+ +. .+.....+|.|++++|.. |.
T Consensus 219 -~-------~~------~~~~~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 219 -D-------IS------ADELKEQFDAVVLAGGATKPR 242 (485)
T ss_pred -c-------cC------HHHHHhhCCEEEEccCCCCCC
Confidence 0 11 011235789999999998 44
No 424
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.0047 Score=59.58 Aligned_cols=135 Identities=22% Similarity=0.240 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCC--------------------------cc-----------hHH
Q 016820 204 RDKPLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSF--------------------------RA-----------SKI 245 (382)
Q Consensus 204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~--------------------------~~-----------~~~ 245 (382)
...+|+|||+|.+|+-++..|.+.|.. +.+++++..+ +. ...
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD 86 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence 346899999999999999999999988 9999888644 00 122
Q ss_pred HHHHhccCCCc--EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC--CChhhhcccccccCCCc
Q 016820 246 MQNRALTNPKI--DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE--PATKFVDGQLDLHSDGY 321 (382)
Q Consensus 246 ~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~--p~~~~~~~~~~~~~~g~ 321 (382)
.....+++.++ ++..++.+..+..+.+++ ...|+++. +...++.+|.||+|||.- |+.+-+. ++.. -.|.
T Consensus 87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~-~w~V~~~~---~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~-f~g~ 160 (443)
T COG2072 87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTK-RWTVTTSD---GGTGELTADFVVVATGHLSEPYIPDFA-GLDE-FKGR 160 (443)
T ss_pred HHHHHHHHcCceeEEEcccceEEEEecCCCC-eEEEEEcC---CCeeeEecCEEEEeecCCCCCCCCCCC-CccC-CCce
Confidence 23344554442 344456666666665543 44455544 322227899999999993 3333222 2211 1222
Q ss_pred eeeCC---CCCcCCCCceEEecccCC
Q 016820 322 IITKP---GTTHTSVPGVFAAGDVQD 344 (382)
Q Consensus 322 i~vd~---~~~~t~~~~vya~GD~~~ 344 (382)
+.--. +...-.-++|-+||--++
T Consensus 161 ~~HS~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 161 ILHSADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred EEchhcCCCccccCCCeEEEECCCcc
Confidence 21111 011224578999998764
No 425
>PRK07538 hypothetical protein; Provisional
Probab=97.13 E-value=0.0045 Score=59.33 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.2
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~ 240 (382)
+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 6999999999999999999999999999987654
No 426
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.11 E-value=0.0058 Score=60.72 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=37.8
Q ss_pred cCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 252 ~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
.+.|++++.++.+..+..++++ +.++++.+..++++..+.+|.||.|+|.-.
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~~~~--v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIREGDT--VCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HhCCCEEEeccEEEEEEEcCCe--EEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 3568888888899998876542 556777654445456799999999998643
No 427
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.10 E-value=0.0052 Score=58.46 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=66.3
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------------------------------------------- 241 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------------------------------------------- 241 (382)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+...
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 569999999999999999999999999999886410
Q ss_pred -----c-------------hHHHHHHh---ccCCCcEEEcCceeEEEEe-cCCceeeeeEEEEeccCCceEEEecCeEEE
Q 016820 242 -----A-------------SKIMQNRA---LTNPKIDVIWNSVVLEAYG-EGDKKVLGGLKVKNLVTGQVSDLKVSGLFF 299 (382)
Q Consensus 242 -----~-------------~~~~~~~~---l~~~gv~~~~~~~v~~i~~-~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~ 299 (382)
. ...+.+.+ ..+.|+++++++++.+++. ++++ ..|.+.. +++..++.+|+||-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~---~~V~~~~--~G~~~~i~ad~vVg 157 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR---PYVTYEK--DGEEHRLDCDFIAG 157 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc---eEEEEEc--CCeEEEEEeCEEEE
Confidence 0 00001111 2346888888988888876 3332 2244431 24445789999999
Q ss_pred eeCCCCC
Q 016820 300 AIGHEPA 306 (382)
Q Consensus 300 ~~G~~p~ 306 (382)
|-|....
T Consensus 158 ADG~~S~ 164 (392)
T PRK08243 158 CDGFHGV 164 (392)
T ss_pred CCCCCCc
Confidence 9888754
No 428
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.09 E-value=0.0054 Score=58.06 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=31.8
Q ss_pred CcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSF 240 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~ 240 (382)
-.|+|||+|.+|+-++.+|.+.. .+|+++++...+
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~ 40 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV 40 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence 46999999999999999999998 899999987766
No 429
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.09 E-value=0.0039 Score=61.67 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=30.1
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 237 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~ 237 (382)
-.|+|||+|+.|++.|..+++.|.+|.++++.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 46999999999999999999999999999887
No 430
>PRK10015 oxidoreductase; Provisional
Probab=97.09 E-value=0.005 Score=59.25 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=30.7
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4799999999999999999999999999987654
No 431
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.04 E-value=0.0025 Score=56.65 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=31.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~ 90 (382)
..+|+||||||..|++.|++|.-. +.+|.++|+.
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke 82 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKE 82 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehh
Confidence 469999999999999999999877 8999999974
No 432
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.02 E-value=0.0036 Score=66.36 Aligned_cols=96 Identities=22% Similarity=0.184 Sum_probs=61.6
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
..++|+|||||..|+.+|..+.++|.+ |+++.+. ....++. ...+ .+.+.+.||
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr---------------~~~em~a-----~~~e-----~~~a~eeGI 624 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR---------------SEAEAPA-----RIEE-----IRHAKEEGI 624 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec---------------CcccCCC-----CHHH-----HHHHHhCCC
Confidence 457999999999999999999999985 6777631 0001111 1111 123566799
Q ss_pred EEEEe-eEEEEEec-CCcE---EEE---E-------------CC--eEEEcCEEEEccCCCCcCC
Q 016820 136 QIFTE-TVSKVDFK-SRPF---KVF---T-------------DS--KSVLADTVIVATGAVAKKL 177 (382)
Q Consensus 136 ~~~~~-~v~~i~~~-~~~~---~v~---~-------------~~--~~~~~d~lvlA~G~~~~~~ 177 (382)
+++.. .+..+..+ ++.+ .+. . .+ .++.+|.||+|.|..|+..
T Consensus 625 ~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 689 (1006)
T PRK12775 625 DFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI 689 (1006)
T ss_pred EEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh
Confidence 98877 45566432 2222 111 0 11 2599999999999998754
No 433
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.01 E-value=0.004 Score=60.27 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=26.9
Q ss_pred cEEEEcCCchHHHHHHHHhhcC---CEEEEEEeCCCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYG---SKVYIIHRRDSF 240 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g---~~v~~~~~~~~~ 240 (382)
+|+|||+|..|.-.|..|.+.+ .+|++++.....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 5899999999999999999988 789999887543
No 434
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.01 E-value=0.011 Score=55.23 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=47.6
Q ss_pred CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCC
Q 016820 113 FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVA 174 (382)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~ 174 (382)
||......++.+.+...+++.||+++++ +|.+|+ ++.+.+.+.. ..+++|+||+|||+.+
T Consensus 79 fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 79 FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 4445567889999999999999999999 799993 3456776532 4699999999999864
No 435
>PLN02976 amine oxidase
Probab=96.99 E-value=0.0011 Score=70.57 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=37.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT 103 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~ 103 (382)
..++|+|||||++|+.+|+.|.+.|++|+|+| ....+||++..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlE----a~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLE----ARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEe----eccCCCCceee
Confidence 45899999999999999999999999999999 44567777654
No 436
>PRK09897 hypothetical protein; Provisional
Probab=96.98 E-value=0.0079 Score=59.10 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=29.2
Q ss_pred CcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSF 240 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~ 240 (382)
++|+|||+|+.|+-++..|.+.+ .+|++++++..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 47999999999999999998764 479999886544
No 437
>PRK11445 putative oxidoreductase; Provisional
Probab=96.96 E-value=0.0087 Score=56.00 Aligned_cols=93 Identities=23% Similarity=0.223 Sum_probs=63.1
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------ch----HHH-------------------------
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------AS----KIM------------------------- 246 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~~----~~~------------------------- 246 (382)
+|+|||+|+.|+-+|..|.+. .+|+++++.+... .. ..+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 699999999999999999998 9999999776310 00 000
Q ss_pred --------------H-----HHh---ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820 247 --------------Q-----NRA---LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 247 --------------~-----~~~---l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~ 304 (382)
. .+. ....|++++.++.+..+..++++ +.+....+++..++.+|++|.|.|..
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~-----~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG-----YHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE-----EEEEEecCCcEEEEEeCEEEECCCCC
Confidence 0 001 11357888889899988876654 32321112433468999999999986
Q ss_pred C
Q 016820 305 P 305 (382)
Q Consensus 305 p 305 (382)
.
T Consensus 157 S 157 (351)
T PRK11445 157 S 157 (351)
T ss_pred c
Confidence 4
No 438
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.95 E-value=0.012 Score=59.67 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=62.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT 135 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 135 (382)
..++|+|||+|..|+.+|..+.++|. +|+++.+. ....++. ...++. .+.+.|+
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr---------------~~~~~~~-----~~~e~~-----~a~~eGv 504 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRR---------------DEVSMPG-----SRKEVV-----NAREEGV 504 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeec---------------CcccCCC-----CHHHHH-----HHHHcCC
Confidence 34789999999999999999999995 79999831 0001111 122222 2466799
Q ss_pred EEEEe-eEEEEEecC-CcEE-EE---E------------------CCeEEEcCEEEEccCCCCcC
Q 016820 136 QIFTE-TVSKVDFKS-RPFK-VF---T------------------DSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 136 ~~~~~-~v~~i~~~~-~~~~-v~---~------------------~~~~~~~d~lvlA~G~~~~~ 176 (382)
+++.. .+.+|..++ +.+. +. . +...+.+|.||+|+|..|+.
T Consensus 505 ~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~ 569 (639)
T PRK12809 505 EFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHA 569 (639)
T ss_pred eEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCc
Confidence 98887 466765332 2221 11 0 11258999999999998864
No 439
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.94 E-value=0.0082 Score=57.16 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=68.1
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------- 242 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------- 242 (382)
..|+|||+|+.|.-+|..|++.|.+|.+++++..+..
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 4699999999999999999999999999998776510
Q ss_pred --------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 243 --------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 243 --------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
.+++ .+..++.|.+++.++++..+..++++ +...... ++ .++.++++|.|.|...
T Consensus 84 ~~~~~~y~v~R~~fd~~L-a~~A~~aGae~~~~~~~~~~~~~~~~-----~~~~~~~-~~-~e~~a~~vI~AdG~~s 152 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWL-AERAEEAGAELYPGTRVTGVIREDDG-----VVVGVRA-GD-DEVRAKVVIDADGVNS 152 (396)
T ss_pred cCCCceEEEEhHHhhHHH-HHHHHHcCCEEEeceEEEEEEEeCCc-----EEEEEEc-CC-EEEEcCEEEECCCcch
Confidence 0111 22345578999999999999888875 2222111 22 6899999999998654
No 440
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.94 E-value=0.0077 Score=57.73 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=31.0
Q ss_pred cEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCCCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSF 240 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~~~ 240 (382)
+|+|||+|..|+-+|..|.+.| .+|+++++.+.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 6999999999999999999998 499999988765
No 441
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.93 E-value=0.008 Score=57.21 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=30.2
Q ss_pred CcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRD 238 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~ 238 (382)
-+|+|||+|.+|+-+|..|.+. |.+|+++++..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3699999999999999999998 99999999864
No 442
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.92 E-value=0.0019 Score=61.34 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=30.7
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
+|+|||+|..|+++|..|++.|.+|+++++++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 689999999999999999999999999997665
No 443
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.92 E-value=0.0052 Score=57.87 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=30.0
Q ss_pred cEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCCCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRDSF 240 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~~~ 240 (382)
.|+|||+|+.|+.+|..|.+. |.+|.++++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 489999999999999999986 8999999987733
No 444
>PRK02106 choline dehydrogenase; Validated
Probab=96.91 E-value=0.00096 Score=66.57 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=31.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHH-cCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAAR-AELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~lie~~ 90 (382)
..+|+||||+|.+|+.+|.+|++ .|.+|+|||+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG 38 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG 38 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCC
Confidence 45899999999999999999999 69999999974
No 445
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.91 E-value=0.0075 Score=57.22 Aligned_cols=33 Identities=36% Similarity=0.497 Sum_probs=29.8
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
.|+|||+|+.|+.+|..|.+.|.+|+++++.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 489999999999999999999999999997653
No 446
>PRK06996 hypothetical protein; Provisional
Probab=96.88 E-value=0.011 Score=56.44 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=64.0
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcC----CEEEEEEeCCCCc---------------------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYG----SKVYIIHRRDSFR--------------------------------------- 241 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g----~~v~~~~~~~~~~--------------------------------------- 241 (382)
...|+|||+|+.|+-+|..|.+.| .+|+++++.+...
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 457999999999999999999886 4799998864210
Q ss_pred ----------------c-----h----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820 242 ----------------A-----S----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296 (382)
Q Consensus 242 ----------------~-----~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~ 296 (382)
. . ...+.+.+.+.+++++.++++.+++.+.++ +++.....+.+.++.+|+
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-----v~v~~~~~~g~~~i~a~l 165 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-----VTLALGTPQGARTLRARI 165 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-----EEEEECCCCcceEEeeeE
Confidence 0 0 011112344567888888888888776654 444431111125799999
Q ss_pred EEEeeCC
Q 016820 297 LFFAIGH 303 (382)
Q Consensus 297 vi~~~G~ 303 (382)
+|-|.|.
T Consensus 166 vIgADG~ 172 (398)
T PRK06996 166 AVQAEGG 172 (398)
T ss_pred EEECCCC
Confidence 9999995
No 447
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.88 E-value=0.01 Score=56.04 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=46.0
Q ss_pred cCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccc
Q 016820 252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQL 314 (382)
Q Consensus 252 ~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~ 314 (382)
+..|+++++++.|++|+..++|. ..|.+.+..+++...+.+++|++..|...-.-+-+.++
T Consensus 193 ~~~~~~~~~~~eV~~i~r~~dg~--W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 193 KQKGFELHLNHEVTDIKRNGDGR--WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI 253 (488)
T ss_pred hCCCcEEEecCEeCeeEECCCCC--EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence 34599999999999999998874 33666655567778999999999998876333323455
No 448
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.85 E-value=0.0095 Score=56.27 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=60.9
Q ss_pred cEEEEcCCchHHHHHHHH--hhcCCEEEEEEeCCCC--cc----------------------------------------
Q 016820 207 PLAVIGGGDSAMEEANFL--TKYGSKVYIIHRRDSF--RA---------------------------------------- 242 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l--~~~g~~v~~~~~~~~~--~~---------------------------------------- 242 (382)
.|+|||+|+.|..+|..| .+.|.+|.++++.+.. ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 489999999999999999 7778999999876543 00
Q ss_pred ---------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 243 ---------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 243 ---------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
.+.+. +.+...++ ++.+..|.+|+..+++ +.+.. .++..+.++.|+.|.|..+
T Consensus 81 Y~~i~~~~f~~~l~-~~~~~~~~-~~~~~~V~~i~~~~~~-----~~v~~---~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 81 YCMIDRADFYEFLL-ERAAAGGV-IRLNARVTSIEETGDG-----VLVVL---ADGRTIRARVVVDARGPSS 142 (374)
T ss_pred eEEEEHHHHHHHHH-HHhhhCCe-EEEccEEEEEEecCce-----EEEEE---CCCCEEEeeEEEECCCccc
Confidence 01111 22233444 5567889999888863 22222 2235799999999998654
No 449
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.83 E-value=0.01 Score=56.33 Aligned_cols=31 Identities=35% Similarity=0.576 Sum_probs=29.3
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 237 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~ 237 (382)
+|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999987
No 450
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.83 E-value=0.012 Score=56.08 Aligned_cols=33 Identities=27% Similarity=0.588 Sum_probs=30.3
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
+|+|||+|+.|.-+|..|++.|.+|.++++...
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 699999999999999999999999999987654
No 451
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.80 E-value=0.009 Score=56.92 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=55.3
Q ss_pred chHHHHHHHHhhcCCEE------EEEEeCC--CCc-chHHHHHHhccCCCcEEEcCceeEEEEecC--CceeeeeEEEEe
Q 016820 215 DSAMEEANFLTKYGSKV------YIIHRRD--SFR-ASKIMQNRALTNPKIDVIWNSVVLEAYGEG--DKKVLGGLKVKN 283 (382)
Q Consensus 215 ~~a~e~a~~l~~~g~~v------~~~~~~~--~~~-~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~--~g~~~~~v~~~~ 283 (382)
.+++|+-.+|.+.-+++ .-+.+.. .+. ....+ .+.|++.||+++++++|++|+-+. +.+.+..+++..
T Consensus 173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl-~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~ 251 (500)
T PF06100_consen 173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPL-IRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ 251 (500)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHH-HHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc
Confidence 47899999988763222 1111111 111 12333 467889999999999999988753 334566666653
Q ss_pred ccCCceEEEe---cCeEEEeeCCCCC
Q 016820 284 LVTGQVSDLK---VSGLFFAIGHEPA 306 (382)
Q Consensus 284 ~~~~~~~~~~---~D~vi~~~G~~p~ 306 (382)
.+....+. -|.|++..|..-.
T Consensus 252 --~g~~~~i~l~~~DlV~vT~GS~t~ 275 (500)
T PF06100_consen 252 --DGKEETIDLGPDDLVFVTNGSMTE 275 (500)
T ss_pred --CCCeeEEEeCCCCEEEEECCcccc
Confidence 23334443 5888888887653
No 452
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.80 E-value=0.0023 Score=63.95 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=58.6
Q ss_pred CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------c----hHHHHHHhccCCCcEEEcCcee-EE
Q 016820 203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------A----SKIMQNRALTNPKIDVIWNSVV-LE 266 (382)
Q Consensus 203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~----~~~~~~~~l~~~gv~~~~~~~v-~~ 266 (382)
..+++|+|||+|+.|+..|..|.+.|.+|+++++.+.+. . ..... +.+.+.|++++.+..+ .+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l-~~~~~~Gv~~~~~~~~~~~ 213 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEI-QRILDLGVEVRLGVRVGED 213 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHH-HHHHHCCCEEEeCCEECCc
Confidence 457899999999999999999999999999998765431 1 11111 2355678888877544 21
Q ss_pred EEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820 267 AYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA 306 (382)
Q Consensus 267 i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~ 306 (382)
+..+. ....+|.+++++|..+.
T Consensus 214 ~~~~~------------------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 214 ITLEQ------------------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCHHH------------------HHhhCCEEEEeeCCCCC
Confidence 11110 11248999999998753
No 453
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.77 E-value=0.017 Score=56.84 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
.-.|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 34799999999999999999999999999887653
No 454
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0064 Score=53.65 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcC
Q 016820 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK 176 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~ 176 (382)
....+..|+.+.+.+.|+.|.+.+|.+++.-.+ -.||.||-|+|.....
T Consensus 149 E~~~ylpyl~k~l~e~Gvef~~r~v~~l~E~~~----------~~~DVivNCtGL~a~~ 197 (342)
T KOG3923|consen 149 EGPKYLPYLKKRLTENGVEFVQRRVESLEEVAR----------PEYDVIVNCTGLGAGK 197 (342)
T ss_pred cchhhhHHHHHHHHhcCcEEEEeeeccHHHhcc----------CCCcEEEECCcccccc
Confidence 456788888888889999998888877763221 4689999999987543
No 455
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.77 E-value=0.019 Score=55.51 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=35.5
Q ss_pred CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820 253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~ 304 (382)
+.|++++.++.++++..+++|+ +.++.+.+ ..+....+.++.||+|+|.-
T Consensus 142 ~~gv~i~~~~~v~~l~~~~~g~-v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 142 KEGIDTRLNSKVEDLIQDDQGT-VVGVVVKG-KGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HcCCEEEeCCEeeEeEECCCCc-EEEEEEEe-CCCeEEEEecceEEEecCCC
Confidence 4678899999999998765443 55676664 22323457899999999843
No 456
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.77 E-value=0.014 Score=55.96 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=40.4
Q ss_pred ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820 251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA 306 (382)
Q Consensus 251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~ 306 (382)
+++.|++++.+++++++..+++ .+.++.+.+..+++...+.++.||+|||--..
T Consensus 151 ~~~~gv~i~~~~~~~~Li~e~g--~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 151 AEEAGVDIRFNTRVTDLITEDG--RVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHTTEEEEESEEEEEEEEETT--EEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HhhcCeeeeccceeeeEEEeCC--ceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 4456799999999999998754 48889998655676678999999999988765
No 457
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.70 E-value=0.0038 Score=60.71 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=28.5
Q ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 60 KVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
+|+|||.|.+|+++|..|.+.|++|+++|+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECC
Confidence 589999999999999999999999999994
No 458
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.69 E-value=0.0024 Score=54.69 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=30.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE 88 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie 88 (382)
..++|+|||||..|..-+..|.+.|.+|+|++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 34689999999999999999999999999998
No 459
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.67 E-value=0.017 Score=54.65 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=29.2
Q ss_pred cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
.|+|||+|.+|+-+|..|.+.|.+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999998753
No 460
>PLN02985 squalene monooxygenase
Probab=96.66 E-value=0.025 Score=55.72 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=31.4
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
..+|+|||+|..|+-+|..|.+.|.+|+++++..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 4579999999999999999999999999999875
No 461
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.66 E-value=0.016 Score=54.71 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=30.0
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
.+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 369999999999999999999999999998753
No 462
>PLN02697 lycopene epsilon cyclase
Probab=96.66 E-value=0.014 Score=57.46 Aligned_cols=91 Identities=22% Similarity=0.142 Sum_probs=61.2
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------- 242 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------- 242 (382)
-.|+|||+|+.|+.+|..+.+.|.+|.++.+...+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 4799999999999999999999999999976432200
Q ss_pred -h-----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 243 -S-----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 243 -~-----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
. +.+. +.+.+.|+++ .+..+.++..++++ +. +... .++.++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll-~~a~~~GV~~-~~~~V~~I~~~~~~--~~-vv~~----~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELL-RRCVESGVSY-LSSKVDRITEASDG--LR-LVAC----EDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHH-HHHHhcCCEE-EeeEEEEEEEcCCc--EE-EEEE----cCCcEEECCEEEECCCcCh
Confidence 0 1111 1123457887 46788888776553 11 1111 1225799999999999865
No 463
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0039 Score=64.10 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----------hHHHH---HHhccCCCcEEEcCceeEEE
Q 016820 202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----------SKIMQ---NRALTNPKIDVIWNSVVLEA 267 (382)
Q Consensus 202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----------~~~~~---~~~l~~~gv~~~~~~~v~~i 267 (382)
...+++|+|||+|+.|+..|..|.+.|+.|+++.|.++... .+... -.++.++||+++.++.|-+-
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence 34579999999999999999999999999999999998721 11121 14677899999988765221
Q ss_pred EecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 268 ~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
+.+. +..-+.|.|++|+|.+-
T Consensus 1862 -----------vs~d------~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1862 -----------VSLD------ELKKENDAIVLATGSTT 1882 (2142)
T ss_pred -----------ccHH------HHhhccCeEEEEeCCCC
Confidence 1111 12345689999999874
No 464
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.63 E-value=0.0073 Score=56.89 Aligned_cols=69 Identities=28% Similarity=0.375 Sum_probs=56.1
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch------------------HHHHHHhccCCCcEEEcCceeEE
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS------------------KIMQNRALTNPKIDVIWNSVVLE 266 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~------------------~~~~~~~l~~~gv~~~~~~~v~~ 266 (382)
.++++|||||..|++.|..|++.|.+|+++...+.+... .....+.....+|++++.+.|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 589999999999999999999999999999999887321 11223556678999999999999
Q ss_pred EEecCCc
Q 016820 267 AYGEGDK 273 (382)
Q Consensus 267 i~~~~~g 273 (382)
+...-++
T Consensus 204 v~G~vGn 210 (622)
T COG1148 204 VSGSVGN 210 (622)
T ss_pred ecccccc
Confidence 8776543
No 465
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.63 E-value=0.011 Score=56.40 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=32.8
Q ss_pred ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
+++.|++++.++.+.++..++++ +.+.. .+ ..+.+|.||+|+|...
T Consensus 115 l~~~gv~i~~~~~V~~i~~~~~~-----~~v~~--~~--~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 115 LKELGVEILTNSKVKSIKKDDNG-----FGVET--SG--GEYEADKVILATGGLS 160 (400)
T ss_pred HHHCCCEEEeCCEEEEEEecCCe-----EEEEE--CC--cEEEcCEEEECCCCcc
Confidence 44568889999999999776542 33333 12 3689999999999754
No 466
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.01 Score=55.74 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=63.5
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC-C-------------------------------------------
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS-F------------------------------------------- 240 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~-~------------------------------------------- 240 (382)
.-.|+|||+|..|+|.|...++.|.+.++++.+-. +
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~LN 107 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVLN 107 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHhh
Confidence 34799999999999999999999988877765432 2
Q ss_pred -----------------cchHHHHHHhccCCCcEEEcCceeEEEEecC--CceeeeeEEEEeccCCceEEEecCeEEEee
Q 016820 241 -----------------RASKIMQNRALTNPKIDVIWNSVVLEAYGEG--DKKVLGGLKVKNLVTGQVSDLKVSGLFFAI 301 (382)
Q Consensus 241 -----------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~--~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~ 301 (382)
.+.+.+++++...+++++..+.-..=+..++ +-+.+++|.+.+ + +.+.++.||+.|
T Consensus 108 rs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~d---g--t~v~a~~VilTT 182 (679)
T KOG2311|consen 108 RSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVD---G--TVVYAESVILTT 182 (679)
T ss_pred ccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEec---C--cEeccceEEEee
Confidence 0123444444555677776554333333332 224566777765 4 678999999998
Q ss_pred CCC
Q 016820 302 GHE 304 (382)
Q Consensus 302 G~~ 304 (382)
|.-
T Consensus 183 GTF 185 (679)
T KOG2311|consen 183 GTF 185 (679)
T ss_pred ccc
Confidence 864
No 467
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.56 E-value=0.018 Score=58.69 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.8
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
.+|+|||+|..|+.+|..|.+.|.+|+++++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 589999999999999999999999999999864
No 468
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.50 E-value=0.0078 Score=62.37 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
..+++|+|||+|+.|+.+|.+|.+.|++|++++..+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 458999999999999999999999999999999753
No 469
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.49 E-value=0.027 Score=45.99 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=24.5
Q ss_pred EEEcCCchHHHHHHHHhhc-----CCEEEEEEeCC
Q 016820 209 AVIGGGDSAMEEANFLTKY-----GSKVYIIHRRD 238 (382)
Q Consensus 209 ~VvG~G~~a~e~a~~l~~~-----g~~v~~~~~~~ 238 (382)
+|||+|++|+-++..|.+. ..+|+++++.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5899999999999998876 35788888744
No 470
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.46 E-value=0.034 Score=55.88 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=37.3
Q ss_pred CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820 254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~ 304 (382)
.||+++.++.+.++..+++| .+.+|.+.+..++....+.++.||+|||--
T Consensus 146 ~gV~i~~~t~v~~Li~dd~g-rV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGN-RARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 47999999999998775544 377777765333544678999999999874
No 471
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.42 E-value=0.0085 Score=57.42 Aligned_cols=92 Identities=18% Similarity=0.304 Sum_probs=62.1
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC---------------------------------------------
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF--------------------------------------------- 240 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~--------------------------------------------- 240 (382)
-.|+|||+|..|+|.|...++.|.++.+++.+...
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 47999999999999999999999998887655432
Q ss_pred ----------------cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820 241 ----------------RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 241 ----------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~ 304 (382)
.+...+.+.+...+++.++.+ .+.++.-.++. .+.+|.... + ..+.++.||++||.-
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~-~v~GV~t~~---G--~~~~a~aVVlTTGTF 157 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQ-RVVGVVTAD---G--PEFHAKAVVLTTGTF 157 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCC-eEEEEEeCC---C--CeeecCEEEEeeccc
Confidence 001223233344577877744 45555443321 255566554 4 789999999999864
No 472
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.41 E-value=0.0008 Score=56.19 Aligned_cols=33 Identities=33% Similarity=0.524 Sum_probs=29.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEG 89 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~ 89 (382)
...||+|||+|.+||++|+.+.++ ..+|.+||.
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~ 109 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIES 109 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEe
Confidence 357999999999999999999866 689999994
No 473
>PLN02815 L-aspartate oxidase
Probab=96.35 E-value=0.034 Score=55.65 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=36.0
Q ss_pred CCcEEEcCceeEEEEecCCce--eeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820 254 PKIDVIWNSVVLEAYGEGDKK--VLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 254 ~gv~~~~~~~v~~i~~~~~g~--~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~ 304 (382)
.||+++.++.+.++..+++|. .+.++.+.+..++....+.++.||+|||--
T Consensus 169 ~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 169 PNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred CCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 478888888888887654432 366777654334545677899999999844
No 474
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.33 E-value=0.0033 Score=62.20 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=31.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG 89 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~ 89 (382)
.++|+||||+|.+|..+|..|+..|++|+|+|+
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEa 38 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEA 38 (542)
T ss_pred CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeC
Confidence 568999999999999999999988999999996
No 475
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.31 E-value=0.033 Score=55.23 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=34.9
Q ss_pred CCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCccc
Q 016820 333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQED 376 (382)
Q Consensus 333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~ 376 (382)
.+|+|.+|++.+. .....|..||..|+.|++..+.++++...
T Consensus 357 ~~gLf~AGqi~Gt--~Gy~eAaa~Gl~Ag~naa~~~~~~~~~~l 398 (617)
T TIGR00136 357 IQGLFFAGQINGT--TGYEEAAAQGLMAGINAALKLQNKEPFIL 398 (617)
T ss_pred CCCeEEccccCCc--chHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 5899999999874 23569999999999999999998775544
No 476
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.30 E-value=0.029 Score=53.17 Aligned_cols=68 Identities=19% Similarity=0.405 Sum_probs=55.7
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECC---eEEEcCEEEEccCCC-Cc
Q 016820 108 ENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDS---KSVLADTVIVATGAV-AK 175 (382)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~---~~~~~d~lvlA~G~~-~~ 175 (382)
..+|..|..+.+..+.+.+.+.++++|.+++.+ +|.++..+++.+. +.+++ ..+.+|.+|+|+|++ +.
T Consensus 251 ~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 251 CELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred EeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 345667788889999999999999999999998 8999988777655 44344 379999999999998 54
No 477
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.30 E-value=0.049 Score=55.12 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=31.8
Q ss_pred CCcEEEEcCCchHHHHHHHHhhc-CCEEEEEEeCCCC
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDSF 240 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~-g~~v~~~~~~~~~ 240 (382)
..+|+|||+|+.|+-+|..|.+. |.+|+++++.+..
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~ 68 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR 68 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence 45799999999999999999995 9999999987644
No 478
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.30 E-value=0.0033 Score=62.38 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=29.1
Q ss_pred cEEEECCcHHHHHHHHHHHHcC-CCeEEEecc
Q 016820 60 KVCIIGSGPAAHTAAIYAARAE-LKPILFEGW 90 (382)
Q Consensus 60 ~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~ 90 (382)
|++|||||.+|+.+|.+|++.+ ++|+|+|+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG 32 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAG 32 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecC
Confidence 7999999999999999999998 799999963
No 479
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.26 E-value=0.028 Score=50.32 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=36.2
Q ss_pred cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
+++..++++.+|.+.++. +.+|+..+ ..++...+..|.|++|+|.-.
T Consensus 160 ~ki~~nskvv~il~n~gk--VsgVeymd-~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 160 VKILLNSKVVDILRNNGK--VSGVEYMD-ASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred HhhhhcceeeeeecCCCe--EEEEEEEc-CCCCccceecCceEEecCCcC
Confidence 778889999999966653 77788775 345557788999999997654
No 480
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.25 E-value=0.043 Score=52.14 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=31.6
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~ 239 (382)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999999999998874
No 481
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.23 E-value=0.0086 Score=41.24 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=29.0
Q ss_pred EEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc
Q 016820 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR 241 (382)
Q Consensus 210 VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~ 241 (382)
|||+|.+|+..|..|.+.+.+|+++++.+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999988764
No 482
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.23 E-value=0.045 Score=52.98 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=31.2
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
.-+|+|||+|+.|.-+|..|++.|.+|.++++..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3579999999999999999999999999998775
No 483
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.17 E-value=0.064 Score=53.68 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=35.9
Q ss_pred CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
+.||+++.++.+.++..++ | .+.++...+..++....+.++.||+|+|...
T Consensus 141 ~~gv~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 141 KLGVSFFNEYFALDLIHDD-G-RVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HcCCEEEeccEEEEEEEeC-C-EEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 3578888899999887654 3 3556665443334445789999999999653
No 484
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.16 E-value=0.064 Score=54.34 Aligned_cols=50 Identities=18% Similarity=0.275 Sum_probs=37.0
Q ss_pred cCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820 252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH 303 (382)
Q Consensus 252 ~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~ 303 (382)
++.||+++.++.+.++..++ | .+.+|.+.+..++....+.++.||+|||.
T Consensus 181 ~~~gV~i~~~t~v~~Li~d~-g-~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 181 AAGTVKMYTRTEMLDLVVVD-G-RARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HhcCCEEEeceEEEEEEEeC-C-EEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 35678999999999887654 3 37777776533354457899999999987
No 485
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.08 E-value=0.074 Score=51.87 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=30.0
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
-.|+|||+|..|+-.|..+++.|.+|+++++.+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999998754
No 486
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.07 E-value=0.014 Score=49.80 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=30.6
Q ss_pred cccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820 56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFE 88 (382)
Q Consensus 56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie 88 (382)
...++|+|||||-.|...|..|.+.|.+|+|++
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 345799999999999999999999999999998
No 487
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.07 E-value=0.059 Score=52.08 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=28.6
Q ss_pred cEEEEcCCchHHHHHHHHhh----cCCEEEEEEeC
Q 016820 207 PLAVIGGGDSAMEEANFLTK----YGSKVYIIHRR 237 (382)
Q Consensus 207 ~v~VvG~G~~a~e~a~~l~~----~g~~v~~~~~~ 237 (382)
.|+|||+|+.|+-+|..|.+ .|.+|+++++.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 58999999999999999998 79999999983
No 488
>PLN02785 Protein HOTHEAD
Probab=96.03 E-value=0.0069 Score=60.47 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=30.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90 (382)
Q Consensus 57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~ 90 (382)
..+|++|||+|.+|+.+|.+|.+ +.+|+|||+.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G 86 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERG 86 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecC
Confidence 45999999999999999999999 6999999963
No 489
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.99 E-value=0.087 Score=50.80 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=34.2
Q ss_pred CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820 253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~ 304 (382)
+.||+++.++.+.++..+++ .+.++.... .+....+.++.||+|||.-
T Consensus 141 ~~gV~i~~~t~v~~Li~~~~--~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 141 RKNITIIENCYLVDIIENDN--TCIGAICLK--DNKQINIYSKVTILATGGI 188 (433)
T ss_pred cCCCEEEECcEeeeeEecCC--EEEEEEEEE--CCcEEEEEcCeEEEccCcc
Confidence 45899999999999876543 255555433 2333468999999999864
No 490
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.98 E-value=0.085 Score=52.91 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=34.3
Q ss_pred CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820 254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP 305 (382)
Q Consensus 254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p 305 (382)
.||+++.++.+.++..++ | .+.++...+..++....+.++.||+|||...
T Consensus 151 ~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 151 DNIHFYDEHFVTSLIVEN-G-VFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred CCCEEEECCEEEEEEEEC-C-EEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 578888888888887554 2 2555655433334445689999999998863
No 491
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.92 E-value=0.11 Score=52.32 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=29.1
Q ss_pred CcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRD 238 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~ 238 (382)
-.|+|||+|..|+-.|..+.+. |.+|.++.+..
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~ 46 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN 46 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4699999999999999999988 89999987654
No 492
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.92 E-value=0.1 Score=51.49 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=30.5
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
-.|+|||||.+|+-+|..+++.|.+|+++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 579999999999999999999999999999764
No 493
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.89 E-value=0.1 Score=52.70 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=30.3
Q ss_pred CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
-.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 579999999999999999999999999998763
No 494
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.88 E-value=0.064 Score=52.19 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=29.5
Q ss_pred CcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCC
Q 016820 206 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRD 238 (382)
Q Consensus 206 ~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~ 238 (382)
..|+|||+|.+|+.+|..|++. |.+|+++++..
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 4799999999999999999987 88999998653
No 495
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.86 E-value=0.1 Score=51.22 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=34.0
Q ss_pred CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820 254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~ 304 (382)
.||+++.++.+.++..+++ .+.++.+.+. +....+.++.||+|+|..
T Consensus 142 ~gi~i~~~~~v~~l~~~~g--~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 142 PNIRIIEGENALDLLIETG--RVVGVWVWNR--ETVETCHADAVVLATGGA 188 (488)
T ss_pred CCcEEEECeEeeeeeccCC--EEEEEEEEEC--CcEEEEEcCEEEECCCcc
Confidence 5899999999999876543 2555666542 333568999999999874
No 496
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.022 Score=55.15 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=29.3
Q ss_pred cccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE 88 (382)
Q Consensus 58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie 88 (382)
.++++|+|.|.+|+++|..|++.|++|++.|
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d 35 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYD 35 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4679999999999999999999999999999
No 497
>PRK07121 hypothetical protein; Validated
Probab=95.82 E-value=0.14 Score=50.31 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=30.1
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~ 238 (382)
.-.|+|||+|..|+-.|..+++.|.+|++++...
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~ 53 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAA 53 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3479999999999999999999999999987654
No 498
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=95.81 E-value=0.053 Score=49.83 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=31.9
Q ss_pred CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820 205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240 (382)
Q Consensus 205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~ 240 (382)
...|+|||+|..|..+|..|.+.|.+|++++|.-.-
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E 80 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE 80 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEeccccc
Confidence 345999999999999999999999999999987543
No 499
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.80 E-value=0.0087 Score=55.21 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=28.9
Q ss_pred ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820 59 TKVCIIGSGPAAHTAAIYAARAELKPILFE 88 (382)
Q Consensus 59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie 88 (382)
++|.|||.|+.|+..|.-|+++|++|+.+|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vD 30 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVD 30 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEe
Confidence 479999999999999999999999999999
No 500
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.80 E-value=0.12 Score=51.62 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=36.2
Q ss_pred CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820 253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304 (382)
Q Consensus 253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~ 304 (382)
+.||+++.++.+.++..++ | .+.++...+..++....+.++.||+|||.-
T Consensus 148 ~~gv~i~~~~~~~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 197 (566)
T PRK06452 148 GLNVDFYNEWFSLDLVTDN-K-KVVGIVAMQMKTLTPFFFKTKAVVLATGGM 197 (566)
T ss_pred hCCCEEEeCcEEEEEEEEC-C-EEEEEEEEECCCCeEEEEEeCeEEECCCcc
Confidence 3578888888888888753 3 367777765434444678899999999854
Done!