Query 016821
Match_columns 382
No_of_seqs 188 out of 373
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:21:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jlp_A PSI-conotoxin PIIIF; mu 29.6 24 0.00081 22.1 1.5 9 313-321 14-22 (26)
2 2l76_A Nfatc2-interacting prot 23.8 19 0.00065 29.5 0.3 16 131-146 78-93 (95)
3 4hwm_A Uncharacterized protein 21.8 39 0.0013 28.9 1.8 23 122-144 33-56 (130)
4 1as5_A Conotoxin Y-PIIIE; neur 8.1 1.1E+02 0.0038 19.2 0.6 8 313-320 14-21 (26)
5 1oz9_A Hypothetical protein AQ 6.8 2.7E+02 0.0093 23.9 2.8 43 105-150 47-98 (150)
6 3esm_A Uncharacterized protein 6.5 2.6E+02 0.0091 24.4 2.5 25 130-154 104-131 (152)
7 2dnf_A Doublecortin domain-con 6.4 3.3E+02 0.011 22.0 3.0 17 128-144 59-75 (108)
8 2o62_A Hypothetical protein; s 6.3 3.3E+02 0.011 25.7 3.2 26 279-308 231-256 (270)
9 2fyq_A Chymotrypsin-like cyste 6.2 1.7E+02 0.0058 26.3 1.1 16 189-204 88-106 (194)
10 4ash_A NS6 protease; hydrolase 5.9 1.8E+02 0.0062 26.0 1.1 16 189-204 77-95 (185)
No 1
>1jlp_A PSI-conotoxin PIIIF; multiple disulfide bonds, amidated C-terminus; HET: HYP; NMR {Synthetic} SCOP: j.30.1.4
Probab=29.63 E-value=24 Score=22.14 Aligned_cols=9 Identities=67% Similarity=1.634 Sum_probs=7.5
Q ss_pred ccccccCCC
Q 016821 313 TGCYNLLCS 321 (382)
Q Consensus 313 TGCYNl~Cp 321 (382)
.||||.+|-
T Consensus 14 pgcynalcc 22 (26)
T 1jlp_A 14 PGCYNALCC 22 (26)
T ss_dssp TTTTTSSTT
T ss_pred Cchhhhhhe
Confidence 599999983
No 2
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=23.81 E-value=19 Score=29.53 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=12.7
Q ss_pred EEeCCCCCeEEeeecC
Q 016821 131 TIQSPDGDIIDCVETH 146 (382)
Q Consensus 131 TIqs~DGDiiDCVdI~ 146 (382)
++..+|||+|||+-+.
T Consensus 78 ~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 78 TLKLGVADIIDCVVLT 93 (95)
T ss_dssp HHTCCSSCEEEEEECC
T ss_pred HcCCCCCCEEEEEEec
Confidence 3558999999998753
No 3
>4hwm_A Uncharacterized protein YEDD; YEDD-like protein, PF13987 family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 1.38A {Klebsiella pneumoniae subsp}
Probab=21.77 E-value=39 Score=28.95 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=17.7
Q ss_pred HhhcCCcceE-EeCCCCCeEEeee
Q 016821 122 NKINKPAVKT-IQSPDGDIIDCVE 144 (382)
Q Consensus 122 k~iNKp~vKT-Iqs~DGDiiDCVd 144 (382)
+.+...|+.| |-|++||.+||--
T Consensus 33 ~lvSpeAiASLivt~eGdTLDCRQ 56 (130)
T 4hwm_A 33 AMMSPDAIASLIVTKEGDTFDCRQ 56 (130)
T ss_dssp TSSSTTCEEEEEECTTSEEEEEEE
T ss_pred cccChhheeeEEEcCCCCccchhh
Confidence 3456667766 7899999999964
No 4
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=8.13 E-value=1.1e+02 Score=19.25 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=6.9
Q ss_pred ccccccCC
Q 016821 313 TGCYNLLC 320 (382)
Q Consensus 313 TGCYNl~C 320 (382)
-||||..|
T Consensus 14 pgc~~a~c 21 (26)
T 1as5_A 14 PGCSSASC 21 (26)
T ss_dssp TTCTTCCC
T ss_pred CCcchhhh
Confidence 49999988
No 5
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSG structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15
Probab=6.80 E-value=2.7e+02 Score=23.89 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=31.3
Q ss_pred cCchHHHHHHHHHHHHHHhhcCCc-ceEEeCCC--------CCeEEeeecCCCCC
Q 016821 105 LRPEEELHKLKFIRAHLNKINKPA-VKTIQSPD--------GDIIDCVETHLQPA 150 (382)
Q Consensus 105 ~~~~~~~~~~~~i~~~Lk~iNKp~-vKTIqs~D--------GDiiDCVdI~kQPA 150 (382)
|-..++.+ ++.++-+..++|. |-|+-..+ |||+=|++.-..-|
T Consensus 47 ~vdd~~i~---~LN~~yR~~d~pTDVLSFp~~e~~~~~~~LGDIvIs~~~v~~qA 98 (150)
T 1oz9_A 47 ITDDQEIR---ELNKTYRKKDKPTDVLSFPMGEEFGGYKILGDVVISQDTAERQA 98 (150)
T ss_dssp EECHHHHH---HHHHHHHSCCSCCSEEEEECCCEETTEEEEEEEEEEHHHHHHHH
T ss_pred EECHHHHH---HHHHHHhCCCCCCcEEeecCCCCCCCCcCceeEEEcHHHHHHHH
Confidence 33344444 6777999999998 88998765 89999988655444
No 6
>3esm_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.65A {Nocardia farcinica}
Probab=6.49 E-value=2.6e+02 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=16.3
Q ss_pred eEEeC-CCCCeEEeeecCC--CCCCCCC
Q 016821 130 KTIQS-PDGDIIDCVETHL--QPAFDHP 154 (382)
Q Consensus 130 KTIqs-~DGDiiDCVdI~k--QPAfdHP 154 (382)
|.+|+ +||.+.+++++-. |...+||
T Consensus 104 pa~Qty~dG~vv~W~e~p~~g~~~~e~P 131 (152)
T 3esm_A 104 PAEQTYSDGRVVAWNQPPAAXXSEPEHP 131 (152)
T ss_dssp CEEEEETTSCEEEECBCCCC--CCCSSB
T ss_pred EeEEEecCCeEeEcccCCccccCCCCCC
Confidence 44555 7999999999853 4444443
No 7
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=6.39 E-value=3.3e+02 Score=22.04 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.5
Q ss_pred cceEEeCCCCCeEEeee
Q 016821 128 AVKTIQSPDGDIIDCVE 144 (382)
Q Consensus 128 ~vKTIqs~DGDiiDCVd 144 (382)
+|+.|-|.||.-|+|++
T Consensus 59 aVr~Lyt~~G~~V~~l~ 75 (108)
T 2dnf_A 59 AVHRLYTLEGKLVESGA 75 (108)
T ss_dssp SCCEEEETTCCEESSTT
T ss_pred CEEEEEcCCCCEeCCHH
Confidence 69999999998887764
No 8
>2o62_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.75A {Nostoc punctiforme} SCOP: b.60.1.9 b.60.1.9
Probab=6.30 E-value=3.3e+02 Score=25.67 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=17.8
Q ss_pred CccEEEEeeEECccccCCCccEEEEEEccC
Q 016821 279 DLNTIEAGWQVSPELYGDNYPRFFTYWTTD 308 (382)
Q Consensus 279 ~~nsIeaGW~V~P~lYGD~~pRlFtyWT~D 308 (382)
+.-.|||||.+.|.. +-|+-....++
T Consensus 231 ~~F~lev~Wl~~~~~----~qrlir~Y~~~ 256 (270)
T 2o62_A 231 QPLFLEAGWLIQSDL----RQRMIRSYNDK 256 (270)
T ss_dssp SCEEEEEEEEEETTE----EEEEEEEECTT
T ss_pred CcEEEEEEEEeCCCe----eEEEEEEeCCC
Confidence 345799999999976 34555555444
No 9
>2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A*
Probab=6.22 E-value=1.7e+02 Score=26.32 Aligned_cols=16 Identities=50% Similarity=1.032 Sum_probs=11.0
Q ss_pred CCCCCCcee---eeecCch
Q 016821 189 ESCPEGTIP---IRRTTEQ 204 (382)
Q Consensus 189 ~~CP~GTVP---IrRtt~e 204 (382)
++||||||- |.|.+-|
T Consensus 88 eg~peGtV~silikR~sge 106 (194)
T 2fyq_A 88 EGCPEGTVCSVLIKRDSGE 106 (194)
T ss_dssp SSCCTTCEEEEEEECTTSC
T ss_pred cCCCCCcEEEEEEecCCCC
Confidence 579999874 5665533
No 10
>4ash_A NS6 protease; hydrolase, trypsin-like, calicivirus; 1.58A {Murine norovirus 1}
Probab=5.94 E-value=1.8e+02 Score=26.04 Aligned_cols=16 Identities=25% Similarity=0.827 Sum_probs=11.3
Q ss_pred CCCCCCcee---eeecCch
Q 016821 189 ESCPEGTIP---IRRTTEQ 204 (382)
Q Consensus 189 ~~CP~GTVP---IrRtt~e 204 (382)
++||||||- |.|.+-|
T Consensus 77 eg~peGtV~svlikR~sge 95 (185)
T 4ash_A 77 NGCQEGVVASVLVKRASGE 95 (185)
T ss_dssp SSCCTTCEEEEEEECTTCC
T ss_pred cCCCCCcEEEEEEecCCCC
Confidence 579999974 6666544
Done!