BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016822
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 173/330 (52%), Gaps = 46/330 (13%)
Query: 59 VAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVL 110
A GV++RD+ G H+A++++ K E+IVSAG +G+PQLL+LSG + NI VVL
Sbjct: 229 TATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVL 286
Query: 111 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY 170
P VGQ + DNP N I + P P+E +++ V+GI+ + + + F+ + +
Sbjct: 287 SHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN--DFYQCS----FSSLPFTTPPF 340
Query: 171 GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRT 230
G F P P L + F KV GP+S G L L++
Sbjct: 341 GFF-----------PSSSYP------------LPNSTF--AHFASKVAGPLSYGSLTLKS 375
Query: 231 R-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASA 289
N +P+V FNY+ DL CV G E + N+
Sbjct: 376 SSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP 435
Query: 290 PVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFY 349
LP+ + E FCR++V + WHYHGGC VGKV+D D++V G++ALRV+DGSTF
Sbjct: 436 ----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFP 491
Query: 350 YSPGTNPQATVMMLGRYMGVRILSERLASN 379
Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 492 YTPASHPQGFYLMLGRYVGIKILQERSASD 521
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 173/330 (52%), Gaps = 46/330 (13%)
Query: 59 VAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVL 110
A GV++RD+ G H+A++++ K E+IVSAG +G+PQLL+LSG + NI VVL
Sbjct: 229 TATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVL 286
Query: 111 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY 170
P VGQ + DNP N I + P P+E +++ V+GI+ + + + F+ + +
Sbjct: 287 SHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN--DFYQCS----FSSLPFTTPPF 340
Query: 171 GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRT 230
G F P P L + F KV GP+S G L L++
Sbjct: 341 GFF-----------PSSSYP------------LPNSTF--AHFASKVAGPLSYGSLTLKS 375
Query: 231 R-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASA 289
N +P+V FNY+ DL CV G E + N+
Sbjct: 376 SSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP 435
Query: 290 PVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFY 349
LP+ + E FCR++V + WHYHGGC VGKV+D D++V G++ALRV+DGSTF
Sbjct: 436 ----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFP 491
Query: 350 YSPGTNPQATVMMLGRYMGVRILSERLASN 379
Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 492 YTPASHPQGFYLMLGRYVGIKILQERSASD 521
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 165/329 (50%), Gaps = 46/329 (13%)
Query: 59 VAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVL 110
A GV+++D+ G H+A+++ + E+IVSAG +GSPQLL+LSG + NI VVL
Sbjct: 230 TAIGVIYKDSNGTPHQAFVRG--EGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVL 287
Query: 111 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY 170
P VGQ + DNP N I + P P+E S + V+GIT NF S S +
Sbjct: 288 SHPYVGQFLHDNPRNFINILPPNPIEPSTVTVLGITS-----------NFYQCSFSSLPF 336
Query: 171 GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRT 230
+PP P L + F + KV GP+S G + L +
Sbjct: 337 -----------SIPPFAFFPNP-------TYPLPNSTF--AHFVNKVPGPLSYGSITLNS 376
Query: 231 RNP-NDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASA 289
+ P+V FNY+ DL CV G E + ++
Sbjct: 377 DSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDLPGIDGFDILGIP 436
Query: 290 PVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFY 349
LP + + E FCR+ V + WHYHGGC VG+V+D D++V G++ALRV+DGSTF
Sbjct: 437 ----LPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDGDFRVTGINALRVVDGSTFP 492
Query: 350 YSPGTNPQATVMMLGRYMGVRILSERLAS 378
YSP ++PQ +MLGRY+G +IL ER A+
Sbjct: 493 YSPASHPQGFYLMLGRYVGSKILQERSAA 521
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 121/313 (38%), Gaps = 63/313 (20%)
Query: 82 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 134 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 192
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 193 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 249
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 250 LQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFC 308
++ V G E + P + T L P + L+ +
Sbjct: 414 MRVMVAGIRKAR-------------EIAAQPAMAEWTGR---ELSPGVEAQTDEELQDYI 457
Query: 309 RDTVMTIWHYHGGCQVGKVVDH------DYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 362
R T T++H G ++G V D + +V GV LRV D S NP TVMM
Sbjct: 458 RKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMM 517
Query: 363 LGRYMGVRILSER 375
+G I S R
Sbjct: 518 IGERCADLIRSAR 530
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 121/313 (38%), Gaps = 63/313 (20%)
Query: 82 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 134 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 192
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 193 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 249
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 250 LQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFC 308
++ V G E + P + T L P + L+ +
Sbjct: 414 MRVMVAGIRKAR-------------EIAAQPAMAEWTGR---ELSPGVEAQTDEELQDYI 457
Query: 309 RDTVMTIWHYHGGCQVGKVVDH------DYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 362
R T T++H G ++G V D + +V GV LRV D S NP TVMM
Sbjct: 458 RKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMM 517
Query: 363 LGRYMGVRILSER 375
+G I S R
Sbjct: 518 IGERCADLIRSAR 530
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 120/313 (38%), Gaps = 63/313 (20%)
Query: 82 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 134 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 192
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 193 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 249
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 250 LQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFC 308
++ V G E + P + T L P + L+ +
Sbjct: 414 MRVMVAGIRKAR-------------EIAAQPAMAEWTGR---ELSPGVEAQTDEELQDYI 457
Query: 309 RDTVMTIWHYHGGCQVGKVVDH------DYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 362
R T T +H G ++G V D + +V GV LRV D S NP TVMM
Sbjct: 458 RKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMM 517
Query: 363 LGRYMGVRILSER 375
+G I S R
Sbjct: 518 IGERCADLIRSAR 530
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 22/160 (13%)
Query: 213 ILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXX 272
+ ++ PV+ G ++L T NP D P + Y D+ +Q
Sbjct: 412 VTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADF 471
Query: 273 XYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHG-------GCQVG 325
P + R ++E + RD TI+H G G G
Sbjct: 472 VIR--------------PFDPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWG 517
Query: 326 KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGR 365
VVD D KV GVD LR++DGS ++P + Q + ++G+
Sbjct: 518 -VVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGK 556
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 82 KNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDN 122
K E+++SAG++G+P LL LSG + I +++ P VG+ +SD+
Sbjct: 265 KKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDH 313
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/349 (20%), Positives = 119/349 (34%), Gaps = 95/349 (27%)
Query: 84 EIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNP------------ 123
E+I+S G +P+LLMLSG H I ++D VGQ + D+P
Sbjct: 261 EVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVPFVLRVKDGF 320
Query: 124 ----------------MNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSP 167
++A PV L+++VG + Y+E + A +
Sbjct: 321 GMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEKDAEYRKAKAANGG 380
Query: 168 RDYGMFSPKIGQ--------------LSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFI 213
+D FSP +GQ P +T + + ++ ++ + DP
Sbjct: 381 KD--PFSP-LGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDP------- 430
Query: 214 LEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXX 273
G + L + +P P++ N+F D+ +G
Sbjct: 431 ----------GEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDL 480
Query: 274 YES---MSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK---- 326
ES +P+ ++ + + D T +H G ++ K
Sbjct: 481 VESEYPWEMPL-----------------DSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQ 523
Query: 327 -VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 374
VVD KV G+ LRV D S P Q +V +G I +E
Sbjct: 524 GVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAE 572
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 296 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 355
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 356 PQATVMMLGRYMGVRILSERLASN 379
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 296 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 355
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 356 PQATVMMLGRYMGVRILSERLASN 379
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 296 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 355
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 422 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 478
Query: 356 PQATVMMLGRYMGVRILSE 374
P T+ L RI+ +
Sbjct: 479 PFVTITALAERNVERIIKQ 497
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 296 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 355
R+ T L+ F D +H GGC +GK D +V G L V DGS S G +
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVD 480
Query: 356 PQATVMMLGRYMGVRILSERLASN 379
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 296 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 355
R+ T L+ F D ++ GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YNPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 356 PQATVMMLGRYMGVRILSERLAS 378
P T+ L RI+ + + +
Sbjct: 481 PFVTITALAERNVERIIKQDVTA 503
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 296 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 355
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 356 PQATVMMLGRYMGVRILSERLASN 379
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 296 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 355
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 426 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 482
Query: 356 PQATVMMLGRYMGVRILSERLASN 379
P T+ L RI+ + + ++
Sbjct: 483 PFVTITALAERNVERIIKQDVTAS 506
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 296 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 355
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 356 PQATVMMLGRYMGVRILSERLASN 379
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 292 NLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGS 346
LLP N++ ++ F +V+T H G C++GK VVD + ++ +D L V+D S
Sbjct: 437 ELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDAS 495
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 83 NEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA 126
++I++ AGAL SP LLM SG A + ++D P +G+ + D+ + A
Sbjct: 261 DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGA 312
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 296 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 355
R+ T L+ F D +H GGC +GK D +V G L V DGS S G
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVL 480
Query: 356 PQATVMMLGRYMGVRILSERLASN 379
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 327 VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 373
VVD + KV G + L ++D + P NPQ T+M +IL+
Sbjct: 495 VVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILA 541
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 327 VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 373
VVD + KV G + L ++D + P NPQ T+M +IL+
Sbjct: 490 VVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILA 536
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 316 WHYHGGC-----QVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVR 370
WH C ++G VVD KV G LRVIDGS P T + VM + M ++
Sbjct: 519 WHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSI----PPTQVSSHVMTIFYGMALK 574
Query: 371 I 371
+
Sbjct: 575 V 575
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 17/155 (10%)
Query: 50 FCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVV 109
S+ P A GV F G H Y K+E++++AG+ SP +L SG +++
Sbjct: 254 LLSQNGTTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSGIGMKSIL 309
Query: 110 LDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRD 169
+PL + D P+ S I G Q + A E F
Sbjct: 310 --EPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETF--------- 358
Query: 170 YGMFSPKIGQLSKVPPKQRTPEAIAE-AIENMKAL 203
G +S K +L +Q EA+A N AL
Sbjct: 359 -GDYSEKAHELLNTKLEQWAEEAVARGGFHNTTAL 392
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 323 QVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 371
++G VVD+ +V GV LRVIDGS P T + VM + M ++I
Sbjct: 527 EMGGVVDNAARVYGVQGLRVIDGSI----PPTQMSSHVMTVFYAMALKI 571
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 287 ASAPVNLLPRHSNASTSLEQ---FCRDTVMT-IWHYHGGCQVGKVVDHDYKVLG 336
AS P+ LLP++ NA+ +++Q DT ++ + HG C G V Y + G
Sbjct: 394 ASRPLRLLPQYRNATITVQQADDAYEDTALSPLITTHGFCVTGGVFTSIYDISG 447
>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A
Prototype For Matrix
Metalloproteinases(Slash)collagenases
Length = 202
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 274 YESMSVPI-LVNMTASAPVNLLPRHSNASTSLEQF--CRDTVMTIWHYHGGCQVGKVVDH 330
Y S+++ + L ++ + + + S++S +L F R+ V+ IW H Q+ ++
Sbjct: 44 YRSLNIRVSLTDLEIWSGQDFITIQSSSSNTLNSFGEWRERVLLIWKRHDNAQLLTAINF 103
Query: 331 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 372
+ K++G Y S NP+++V ++ + + +L
Sbjct: 104 EGKIIG----------KAYTSSMCNPRSSVGIVKDHSPINLL 135
>pdb|2O8S|A Chain A, X-ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120.
pdb|2O8S|B Chain B, X-ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120
Length = 323
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 137 VSLIQVVGITQFGSYIEAASGENFAGGSPSP--RDYGMFSPKIGQ----LSKVPPKQRTP 190
VS Q + + G SG N +GGS + Y + S IG+ +SK P R
Sbjct: 26 VSHKQAATLCRQGRTCALKSGSNESGGSVTSTYTSYRLISQDIGKSLERVSKQPDVARET 85
Query: 191 EAIAEAIENMKALDD 205
E E I ++K++DD
Sbjct: 86 EYYREKIGSVKSIDD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,106,773
Number of Sequences: 62578
Number of extensions: 457987
Number of successful extensions: 960
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 42
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)