BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016822
(382 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
Length = 594
Score = 337 bits (865), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 175/333 (52%), Positives = 222/333 (66%), Gaps = 14/333 (4%)
Query: 57 RPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITV 108
RP GV+F+D G +H+A L N +E+I+S+GA+GSPQ+LMLSG I V
Sbjct: 261 RPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPV 320
Query: 109 VLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSP- 167
VL+ VG+GM+DNPMN I VPS P+E SLIQ VGIT+ G Y+EA++G G SP
Sbjct: 321 VLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITKMGVYVEASTG---FGQSPESI 377
Query: 168 -RDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHL 226
YG+ S K S +P KQR PEA I K AF G FILEK+ P+S GHL
Sbjct: 378 HTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLHEAFNGSFILEKLAYPISRGHL 437
Query: 227 ELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKF-KYESMSVPILVNM 285
L N +DNPSVTFNYFK P DLQRCV+ I + K++ S F + + + +V ++++
Sbjct: 438 SLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSL 497
Query: 286 TASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDG 345
+ A +NL P+ N + S+ QFC+DTV+TIWHYHGGC VGKVV + KVLGVD LRVIDG
Sbjct: 498 SVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDG 557
Query: 346 STFYYSPGTNPQATVMMLGRYMGVRILSERLAS 378
STF SPGTNPQAT+MM+GRYMGV+IL ERL +
Sbjct: 558 STFDESPGTNPQATMMMMGRYMGVKILRERLGN 590
>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050
PE=2 SV=1
Length = 552
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 186/326 (57%), Gaps = 45/326 (13%)
Query: 60 AHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLD 111
A GVV+RD G H A +++ + E+I+SAGALGSPQLL LSG I V LD
Sbjct: 262 AIGVVYRDQLGRFHHALIRD--RGEVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALD 319
Query: 112 QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGE-NFAGGSPSPRDY 170
QP VG + DNP N I + PVP+E SLIQVVG+T+ G+++EAAS FA
Sbjct: 320 QPHVGDFVYDNPRNGISIVPPVPMENSLIQVVGVTEDGAFLEAASNVIPFA--------- 370
Query: 171 GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRT 230
SP + P +P + I+EK++GPVS G L L +
Sbjct: 371 ---SPLHSVFIRAPA---SPLYVPVTT---------------IMEKILGPVSIGLLRLAS 409
Query: 231 RNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAP 290
+ NP V FNYF +P+DL+RCV G I +I+ S++ F AP
Sbjct: 410 TDVRINPVVRFNYFSDPQDLERCVNGTRKIGEILRSRAMQDFMIREWFGNRRFRFVG-AP 468
Query: 291 VNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYY 350
LP + + FCR TV TIWHYHGG VGKVVD D KV+GV++LR++DGSTF
Sbjct: 469 ---LPVDQSNDLVMADFCRRTVSTIWHYHGGAVVGKVVDSDLKVIGVNSLRLVDGSTFNI 525
Query: 351 SPGTNPQATVMMLGRYMGVRILSERL 376
SPGTNPQAT+MMLGRYMG+++L ER+
Sbjct: 526 SPGTNPQATLMMLGRYMGLKMLRERM 551
>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1
Length = 563
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 180/330 (54%), Gaps = 46/330 (13%)
Query: 59 VAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVL 110
A GV++RD+ G HRA++++ K E+IVSAG +G+PQLL+LSG + NI VVL
Sbjct: 256 TATGVIYRDSNGTPHRAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVL 313
Query: 111 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY 170
P VGQ + DNP N I + P P+E +++ V+GI+ +F S S +
Sbjct: 314 SHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN-----------DFYQCSFSSLPF 362
Query: 171 GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRT 230
PP P L + F KV GP+S G L L++
Sbjct: 363 -----------TTPPFSFFPST-------SYPLPNSTF--AHFASKVAGPLSYGSLTLKS 402
Query: 231 R-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASA 289
N +P+V FNY+ P DL CV G+ I +++ + + +K E + N+
Sbjct: 403 SSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGIEGFNILGIP 462
Query: 290 PVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFY 349
LP+ + E FCR++V + WHYHGGC VGKV+D D++V G+DALRV+DGSTF
Sbjct: 463 ----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGIDALRVVDGSTFP 518
Query: 350 YSPGTNPQATVMMLGRYMGVRILSERLASN 379
Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 519 YTPASHPQGFYLMLGRYVGIKILQERSASD 548
>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1
Length = 563
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 180/330 (54%), Gaps = 46/330 (13%)
Query: 59 VAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVL 110
A GV++RD+ G H+A++++ K E+IVSAG +G+PQLL+LSG + NI VVL
Sbjct: 256 TATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVL 313
Query: 111 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY 170
P VGQ + DNP N I + P P+E +++ V+GI+ +F S S +
Sbjct: 314 SHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN-----------DFYQCSFSSLPF 362
Query: 171 GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRT 230
PP P A L + F KV GP+S G L L++
Sbjct: 363 -----------TTPPFGFFPSA-------SYPLPNSTF--AHFASKVAGPLSYGSLTLKS 402
Query: 231 R-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASA 289
N +P+V FNY+ DL CV G+ I +++ + + +K E + N+
Sbjct: 403 SSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP 462
Query: 290 PVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFY 349
LP+ + E FCR++V + WHYHGGC VGKV+D D++V G++ALRV+DGSTF
Sbjct: 463 ----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFP 518
Query: 350 YSPGTNPQATVMMLGRYMGVRILSERLASN 379
Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 519 YTPASHPQGFYLMLGRYVGIKILQERSASD 548
>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1
Length = 576
Score = 194 bits (493), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 180/336 (53%), Gaps = 54/336 (16%)
Query: 59 VAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVL 110
A GV++ D+ G H+A+++ E+I+SAG +GSPQLL+LSG + NI+VV
Sbjct: 258 TAIGVIYTDSNGTTHQAFVRG--DGEVILSAGPIGSPQLLLLSGVGLESYLTSLNISVVA 315
Query: 111 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY 170
P VGQ + DNP N I + P P+E S + V+GIT Y + S F S +P +
Sbjct: 316 SHPYVGQYIYDNPRNFINILPPNPIEASTVTVLGITS-DFYQCSISSLPF---STAP--F 369
Query: 171 GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR- 229
G F P P L + F I+ KV GP+S G + L+
Sbjct: 370 GFF-----------PNPTYP------------LPNTTF--AHIVNKVPGPLSHGTVLLQS 404
Query: 230 TRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESM----SVPILVNM 285
T + P+VTFNY+ DL CV G+ I + + S + +K E + IL
Sbjct: 405 TSDVRVAPNVTFNYYSNTTDLAHCVSGMKKIGEFLSSDALKPYKVEDLPGIEGFDIL--- 461
Query: 286 TASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDG 345
P LP + + E FCR+ V + WHYHGGC VG+V+D D++V G++ALRV+DG
Sbjct: 462 --GIP---LPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDDDFRVTGINALRVVDG 516
Query: 346 STFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 381
STF +P ++PQ +MLGRYMG +IL ERLAS ++
Sbjct: 517 STFPSTPASHPQGFYLMLGRYMGTKILQERLASEEA 552
>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1
Length = 574
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 46/332 (13%)
Query: 59 VAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVL 110
A GVV+ D+ G HRA + K E+I+SAG LG+PQLL+LSG + NI+VV
Sbjct: 258 TAVGVVYTDSNGTSHRALVSG--KGEVILSAGTLGTPQLLLLSGVGPESYLTSLNISVVA 315
Query: 111 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY 170
P VGQ ++DNP N I + P P+E S + V+GIT +F S S +
Sbjct: 316 SHPYVGQYVNDNPRNFINILPPNPIEPSTVTVLGITS-----------DFYQCSLSSLPF 364
Query: 171 GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRT 230
PP P L + F I+ KV GP+S G L L++
Sbjct: 365 -----------DTPPFSLFPTT-------SYPLPNQTF--AHIVSKVPGPLSAGSLTLQS 404
Query: 231 R-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASA 289
N + P+V FNY +P DL CV G+ I + + + +K + + N+ +
Sbjct: 405 SSNVSVAPNVKFNYCSDPVDLTHCVSGMKKIGVFLSTDALKPYKVDDLPGIDGFNILGTP 464
Query: 290 PVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFY 349
LP + + E+FCRDTV + WHYHGG VGKV+D +++V G++ALRV+DGSTF
Sbjct: 465 ----LPENQTDDAAFEKFCRDTVASYWHYHGGAIVGKVIDGNFRVTGINALRVVDGSTFP 520
Query: 350 YSPGTNPQATVMMLGRYMGVRILSERLASNDS 381
+P ++PQ +MLGRY+G +I+ ER AS ++
Sbjct: 521 ATPASHPQGFYLMLGRYVGTKIVQERSASGEA 552
>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1
Length = 573
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 175/331 (52%), Gaps = 46/331 (13%)
Query: 60 AHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLD 111
A GV++ D+ G H+A+++ + E+I+SAG +GSPQLL+LSG + NI+VV
Sbjct: 258 AIGVIYTDSNGTTHQAFVRG--EGEVILSAGPIGSPQLLLLSGVGPESYLTSLNISVVAS 315
Query: 112 QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYG 171
P VGQ + DNP N I + P P+E S + V+GIT +F S S +
Sbjct: 316 HPYVGQYIYDNPRNFINILPPNPIEASTVTVLGITS-----------DFYQCSISSLPF- 363
Query: 172 MFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTR 231
PP P L + F I+ KV GP+S G + L +
Sbjct: 364 ----------DTPPFSFFPTT-------SYPLPNQTF--AHIVNKVPGPLSHGTVTLNSS 404
Query: 232 NP-NDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAP 290
+ P+V FNY+ DL CV G+ + +++ + + +K E + N+
Sbjct: 405 SDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDALEPYKVEDLPGIDGFNILGIP- 463
Query: 291 VNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYY 350
LP + + E FCR++V + WHYHGGC VGKV+D ++V G++ALRV+DGSTF
Sbjct: 464 ---LPENQTDDAAFETFCRESVASYWHYHGGCLVGKVLDDGFRVTGINALRVVDGSTFPS 520
Query: 351 SPGTNPQATVMMLGRYMGVRILSERLASNDS 381
+P ++PQ +MLGRYMG++IL ER AS D+
Sbjct: 521 TPASHPQGFYLMLGRYMGIQILQERSASEDA 551
>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1
Length = 559
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 166/335 (49%), Gaps = 66/335 (19%)
Query: 60 AHGVVFRDATGAKHRAYLK-NGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVL 110
A GV++ D+ G H+A+++ NG E+IVSAG +G+PQLL+LSG + NITVV
Sbjct: 258 AIGVIYTDSDGNSHQAFVRGNG---EVIVSAGTIGTPQLLLLSGVGPESYLSSLNITVVQ 314
Query: 111 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY 170
P VGQ + +NP N I P P+E S++ V+GI DY
Sbjct: 315 PNPYVGQFLYNNPRNFINNFPPNPIEASVVTVLGIRS---------------------DY 353
Query: 171 GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRT 230
S S PP P L + F I+ +V GP+S G + L +
Sbjct: 354 YQVSLSSLPFS-TPPFSLFPTT-------SYPLPNSTF--AHIVSQVPGPLSHGSVTLNS 403
Query: 231 RNP-NDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFK---------YESMSVP 280
+ P++ FNY+ DL CV G+ + ++ +K+ +K + + VP
Sbjct: 404 SSDVRIAPNIKFNYYSNSTDLANCVSGMKKLGDLLRTKALEPYKARDVLGIDGFNYLGVP 463
Query: 281 ILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDAL 340
LP + S E FC D V + WHYHGG VGKV+D ++V+G+ AL
Sbjct: 464 -------------LPENQTDDASFETFCLDNVASYWHYHGGSLVGKVLDDSFRVMGIKAL 510
Query: 341 RVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 375
RV+D STF Y P ++PQ +MLGRY+G++IL ER
Sbjct: 511 RVVDASTFPYEPNSHPQGFYLMLGRYVGLQILQER 545
>sp|Q7X2H8|CHOX_ARTGO Choline oxidase OS=Arthrobacter globiformis GN=codA PE=1 SV=1
Length = 546
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 124/312 (39%), Gaps = 61/312 (19%)
Query: 82 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 134 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 192
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 193 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 249
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 250 LQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCR 309
++ V GI +I + +++ +S + + L+ + R
Sbjct: 414 MRVMVAGIRKAREIAAQPAMAEWTGRELSPGV---------------EAQTDEELQDYIR 458
Query: 310 DTVMTIWHYHGGCQVGKVVDH------DYKVLGVDALRVIDGSTFYYSPGTNPQATVMML 363
T T++H G ++G V D + +V GV LRV D S NP TVMM+
Sbjct: 459 KTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMI 518
Query: 364 GRYMGVRILSER 375
G I S R
Sbjct: 519 GERCADLIRSAR 530
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 144/359 (40%), Gaps = 70/359 (19%)
Query: 50 FCSELKARP----VAHGVVFR---DATGAKHRAYLKNGPK------NEIIVSAGALGSPQ 96
+ + KARP V H + R D A YL+ + E++V +GA+ SPQ
Sbjct: 207 YLDQAKARPNLEIVTHALADRILFDGKRASGVTYLRGSERATAHARREVLVCSGAIASPQ 266
Query: 97 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 136
LL SG A +I VVLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKALDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 137 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 196
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 197 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 256
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDA 428
Query: 257 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 316
I +I+ + +++ + N A + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGREL------NPGADCKTD---------KELDAFVRARAETAF 473
Query: 317 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 371
H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 474 HPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 143/359 (39%), Gaps = 70/359 (19%)
Query: 50 FCSELKARP----VAHGVVFR---DATGAKHRAYLKNGPK------NEIIVSAGALGSPQ 96
+ + K RP V H + R D A AYL+ + E++V +GA+ SPQ
Sbjct: 207 YLDQAKTRPNLEIVTHALADRILFDGKRASGVAYLRGSERATAHARREVLVCSGAIASPQ 266
Query: 97 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 136
LL SG +I +VLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 137 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 196
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 197 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 256
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDA 428
Query: 257 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 316
I +I+ + +++ + N A + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGREL------NPGADC---------RSDKELDTFVRARAETAF 473
Query: 317 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 371
H C++G VVD + +V G+D LRV+D S N A +M+ + RI
Sbjct: 474 HPSCSCKMGYDDMAVVDDEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRI 532
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 126/315 (40%), Gaps = 55/315 (17%)
Query: 82 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+ E+IV+A ++ SP++LMLSG + I VV D+P VG+ + D+ I S
Sbjct: 244 RREVIVAASSINSPKILMLSGIGPAEHLRENGIAVVADRPGVGRNLQDHMELYIQQESTK 303
Query: 134 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY----------GMFSPKIGQLSKV 183
P+ ++ + + F + A F G + + G+ P I Q +
Sbjct: 304 PITLNSV----LNPFSKALIGAQWLFFKSGLGATNHFEAAAFVRSRAGVDYPDI-QYHFI 358
Query: 184 PPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNY 243
P R A +A P M S G + LR+ +P P + FNY
Sbjct: 359 PAAVRYDGKAAAKSHGFQAHVGP-----------MRSKSRGSVTLRSPDPKAKPVIRFNY 407
Query: 244 FKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTS 303
P+D I +I +F F+ + +S P + H +
Sbjct: 408 MSHPDDWTEFRHCIRLTREIFGQSAFDAFRGQEIS-----------PGS----HVQSDDD 452
Query: 304 LEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 357
L+ F RD + +H G C++G+ VVD + +V+GVD LRV D S F N
Sbjct: 453 LDVFIRDHAESAYHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLN 512
Query: 358 ATVMMLGRYMGVRIL 372
A +M G IL
Sbjct: 513 APSIMTGEKASDHIL 527
>sp|Q39A44|BETA_BURS3 Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3
SV=1
Length = 566
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 144/363 (39%), Gaps = 70/363 (19%)
Query: 50 FCSELKARP----VAHGVVFR---DATGAKHRAYLKNGPK------NEIIVSAGALGSPQ 96
+ + K RP V H + R D A YL+ + E++V +GA+ SPQ
Sbjct: 207 YLDQAKVRPNLEIVTHALADRILFDGKRASGVTYLRGSERATAHARREVLVCSGAIASPQ 266
Query: 97 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 136
LL SG +I VVLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 137 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 196
+ L ++ T G AS AGG RD ++ P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDLW-PNI-QYHFLP--------VAIN 371
Query: 197 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 256
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDA 428
Query: 257 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 316
I +I+ + +++ + N A + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETAF 473
Query: 317 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 372
H C++G VVD + +V G++ LRV+D S N A +M+ + +I
Sbjct: 474 HPSCSCKMGYDDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIADKIR 533
Query: 373 SER 375
+
Sbjct: 534 GRK 536
>sp|B1K707|BETA_BURCC Choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3)
GN=betA PE=3 SV=1
Length = 566
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 142/359 (39%), Gaps = 70/359 (19%)
Query: 50 FCSELKARP----VAHGVVFR---DATGAKHRAYLKNGPK------NEIIVSAGALGSPQ 96
+ + K RP V H + R D A YL+ + E++V +GA+ SPQ
Sbjct: 207 YLDQAKVRPNLEIVTHALADRILFDGKRASGVTYLRGSERATAHARREVLVCSGAIASPQ 266
Query: 97 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 136
LL SG +I VVLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 137 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 196
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 197 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 256
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDA 428
Query: 257 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 316
I +I+ + +++ + N A + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETAF 473
Query: 317 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 371
H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 474 HPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|A0B2F7|BETA_BURCH Choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424)
GN=betA PE=3 SV=1
Length = 566
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 142/359 (39%), Gaps = 70/359 (19%)
Query: 50 FCSELKARP----VAHGVVFR---DATGAKHRAYLKNGPK------NEIIVSAGALGSPQ 96
+ + K RP V H + R D A YL+ + E++V +GA+ SPQ
Sbjct: 207 YLDQAKVRPNLEIVTHALADRILFDGKRASGVTYLRGSERATAHARREVLVCSGAIASPQ 266
Query: 97 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 136
LL SG +I VVLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 137 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 196
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 197 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 256
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDA 428
Query: 257 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 316
I +I+ + +++ + N A + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETAF 473
Query: 317 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 371
H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 474 HPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|Q1BQE2|BETA_BURCA Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054)
GN=betA PE=3 SV=1
Length = 566
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 142/359 (39%), Gaps = 70/359 (19%)
Query: 50 FCSELKARP----VAHGVVFR---DATGAKHRAYLKNGPK------NEIIVSAGALGSPQ 96
+ + K RP V H + R D A YL+ + E++V +GA+ SPQ
Sbjct: 207 YLDQAKVRPNLEIVTHALADRILFDGKRASGVTYLRGSERATAHARREVLVCSGAIASPQ 266
Query: 97 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 136
LL SG +I VVLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 137 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 196
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 197 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 256
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDA 428
Query: 257 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 316
I +I+ + +++ + N A + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETAF 473
Query: 317 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 371
H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 474 HPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 55/299 (18%)
Query: 70 GAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSD 121
G H+AY+ E+I+S GA+ SPQLLMLSG N I VV P VGQ + D
Sbjct: 286 GQSHKAYVSR----EVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQD 341
Query: 122 NPMNAIFVPSPVPVEVSLIQ------VVGITQFGSYI-EAASGENFAGGSPSPRDYGMFS 174
+ I P+ + Q +G+ + + A+ GG R G+
Sbjct: 342 HLEIYIQHACTQPITLHSAQKPLRKVCIGLEWLWRFTGDGATAHLETGGFIRSRP-GVPH 400
Query: 175 PKIGQLSKVPPKQRTPEAIAEAIEN-MKALDDPAFRGGFILEKVMGPVSTGHLELRTRNP 233
P I Q +P ++ I++ K A++ + M S G L+LR+ NP
Sbjct: 401 PDI-QFHFLP---------SQVIDHGRKPTQQEAYQ---VHVGTMRATSVGWLKLRSTNP 447
Query: 234 NDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNL 293
D+P + NY D++ Q + +I ++F+ F+ + + P +
Sbjct: 448 QDHPMINPNYLSTETDVEDFRQCVKLTREIFAQEAFAPFRGKELQ-----------PGS- 495
Query: 294 LPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGS 346
H + ++ F R + +H C++G+ VVD +V+GV+ LRVID S
Sbjct: 496 ---HVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDAS 551
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 47/303 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG N I VV D P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS + AGG R + P I Q +P
Sbjct: 313 SLYPALQWWNQPKIGAEWLFGGTGIGASNQFEAGGFIRSRAEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ L++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRLKSRDPHAHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I +I+ + K++ +S I + L++F
Sbjct: 420 DWQEFRDAIRITREIMNQPALDKYRGREISPGI---------------ECQSDAELDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ LRV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 365 RYM 367
M
Sbjct: 525 EKM 527
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 129/299 (43%), Gaps = 55/299 (18%)
Query: 70 GAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSD 121
G +H+AY+ E+I+S GA+ SPQLLMLSG N I VV P VGQ + D
Sbjct: 283 GQRHKAYVSR----EVILSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQD 338
Query: 122 NPMNAIFVPSPVPVEVSLIQ------VVGITQFGSYI-EAASGENFAGGSPSPRDYGMFS 174
+ + P+ + Q +G+ SY + A+ GG R G+
Sbjct: 339 HLEVYVQQACTQPITLHSAQKPLRKVCIGLEWLWSYTGDGATAHLETGGFIRSRP-GVPH 397
Query: 175 PKIGQLSKVPPKQRTPEAIAEAIEN-MKALDDPAFRGGFILEKVMGPVSTGHLELRTRNP 233
P I Q +P ++ I++ K A++ + M S G L+LR+ NP
Sbjct: 398 PDI-QFHFLP---------SQVIDHGRKPTQQEAYQ---VHVGTMRATSVGWLKLRSANP 444
Query: 234 NDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNL 293
D+P + NY D++ Q + +I ++ + F+ + + P +
Sbjct: 445 RDHPVIHPNYLSTETDVEDFRQCVRLSREIFAQEALAPFRGKELQ-----------PGS- 492
Query: 294 LPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGS 346
H + ++ F R + +H C++G+ VVD KV+GV+ LRV+D S
Sbjct: 493 ---HVQSDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDAS 548
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 123/303 (40%), Gaps = 49/303 (16%)
Query: 82 KNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+ E+++ AGA+ SPQ+L SG N I VV D P VG+ + D+ +++
Sbjct: 251 RREVLLCAGAIASPQILQRSGVGNAELLKQFDIPVVHDLPGVGENLQDHL--EMYLQYEC 308
Query: 134 PVEVSLIQV--------VGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPP 185
VSL +G + + +F GG P I Q +P
Sbjct: 309 KEPVSLYPALKWWNQPKIGAEWLFNGTGIGASNHFEGGGFIRSREEFAWPNI-QYHFLP- 366
Query: 186 KQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFK 245
+A A++ F+ M S GH+ +++R+P+ +P++ FNY
Sbjct: 367 -------VAINYNGSNAVEAHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMS 416
Query: 246 EPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLE 305
+D Q I +II + KF+ +S I L+
Sbjct: 417 HEQDWQEFRDAIRITRQIINQPALDKFRGREISPGI---------------DCQTDEQLD 461
Query: 306 QFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVM 361
+F R+ T +H G C++G VVD + +V G++ LRV+D S N AT +
Sbjct: 462 EFVRNHAETAYHPCGTCKMGSDEMAVVDDEGRVHGLEGLRVVDASIMPLIITGNLNATTI 521
Query: 362 MLG 364
M+G
Sbjct: 522 MIG 524
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 132/320 (41%), Gaps = 65/320 (20%)
Query: 84 EIIVSAGALGSPQLLMLSG----AH----NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+IVSA + SP+LLMLSG AH I V D+P VG + D+ M F
Sbjct: 245 EVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDH-MEFYFQ------ 297
Query: 136 EVSLIQVVGITQFGSYIEAASGENF---AGGSPSPRDY----------GMFSPKIGQLSK 182
+VS V + + + +G + GG + + G+ P I Q
Sbjct: 298 QVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFLRSAPGLKQPDI-QYHF 356
Query: 183 VPPKQRTPEAIAEAIENMKALDDPAFRG--GFILEKVMGPVSTGHLELRTRNPNDNPSVT 240
+P +A + + A F+ G+ L K S G++ LR+ +P+D+P +
Sbjct: 357 LP--------VAISYDGKAAAKSHGFQAHVGYNLSK-----SRGNVTLRSADPHDDPVIR 403
Query: 241 FNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNA 300
FNY PED ++ + +I K+F F+ P +
Sbjct: 404 FNYMSHPEDWEKFRHCVRLTREIFGQKAFDDFR---------------GPEIQPGENIET 448
Query: 301 STSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGSTFYYSPGT 354
++ F R+ + + +H G C++G VVD + +V+GV+ LRV D S F +
Sbjct: 449 DEQIDAFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYG 508
Query: 355 NPQATVMMLGRYMGVRILSE 374
N +M G IL +
Sbjct: 509 NLNGPSIMTGEKAADHILGK 528
>sp|Q2T6D0|BETA_BURTA Choline dehydrogenase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1
Length = 565
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 131/318 (41%), Gaps = 57/318 (17%)
Query: 82 KNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+ E++V +GA+ SPQLL SG +I VVLD P VG+ + D+ I
Sbjct: 252 RREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKE 311
Query: 134 PV------------EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLS 181
PV ++ L ++ T G AS AGG RD ++ P I Q
Sbjct: 312 PVSLYPALKWWNQPKIGLDWMINGTGLG-----ASNHFEAGGFIRTRDDDLW-PNI-QYH 364
Query: 182 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 241
+P +A A++ F+ M S G ++L++R+PN +PS+ F
Sbjct: 365 FLP--------VAINYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLKSRDPNAHPSILF 413
Query: 242 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 301
NY E D + I +I+ + +F+ ++ P L +
Sbjct: 414 NYMAEALDWREFRDAIRATREIMHQPALDRFRGRELN-----------PGADL----KSD 458
Query: 302 TSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 357
L+ F R T +H C++G VVD++ +V G+D LRV+D S N
Sbjct: 459 NELDAFVRARAETAFHPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLN 518
Query: 358 ATVMMLGRYMGVRILSER 375
A +M+ + +I +
Sbjct: 519 APTIMIAEKIADKIRKRK 536
>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1
Length = 558
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 124/305 (40%), Gaps = 47/305 (15%)
Query: 82 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+ E+++ AGA+ SPQ+L SG A +I +V P VG+ + D+ +
Sbjct: 251 RKEVLLCAGAIASPQILQRSGVGDASLLKAFDIPLVHHLPGVGENLQDHLEMYLQYECKE 310
Query: 134 PVEV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPK 186
PV + + ++ FG AS AGG R FS Q +P
Sbjct: 311 PVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFI--RSSEAFSWPNIQYHFLP-- 366
Query: 187 QRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKE 246
+A A+ + F+ M S GH+ +++R+P ++P++ FNY
Sbjct: 367 ------VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVHIKSRDPREHPAILFNYMST 417
Query: 247 PEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQ 306
+D Q I +II + K++ +S I L+
Sbjct: 418 GQDWQEFRDAIRITREIINQPALDKYRGREISPGITC---------------QTDEQLDA 462
Query: 307 FCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 362
F RD T +H G C++G VVD + +V GV+ LRV+D S N AT +M
Sbjct: 463 FVRDHAETAFHPCGTCKMGYDEMAVVDGEGRVHGVENLRVVDASIMPQIITGNLNATTIM 522
Query: 363 LGRYM 367
+G M
Sbjct: 523 IGEKM 527
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 129/319 (40%), Gaps = 61/319 (19%)
Query: 84 EIIVSAGALGSPQLLMLSG----AH----NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+IVSA + SP+LLMLSG AH I V +D+P VGQ + D+ S PV
Sbjct: 245 EVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDHMEFYFQQISTKPV 304
Query: 136 EV-----SLIQVVGITQFGSYIEAASGEN------FAGGSPSPRDYGMFSPKIGQLSKVP 184
+ Q V Q+ + N F +P G+ P I Q +P
Sbjct: 305 SLYSWLPWFWQGVAGAQWLFFKSGLGISNQFEACAFLRSAP-----GVKQPDI-QYHFLP 358
Query: 185 PKQRTPEAIAEAIENMKALDDPAFRG--GFILEKVMGPVSTGHLELRTRNPNDNPSVTFN 242
+A + A + F+ G+ L K G V+ LR +P +P + FN
Sbjct: 359 --------VAIRYDGKAAANTHGFQVHVGYNLSKSRGSVT-----LRASDPKADPVIRFN 405
Query: 243 YFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAST 302
Y PED ++ + +I K+F +++ P
Sbjct: 406 YMSHPEDWEKFRHCVRLTREIFGQKAFDQYR---------------GPEIQPGERVQTDE 450
Query: 303 SLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGSTFYYSPGTNP 356
++ F R+ + + +H G C++G VVD + +V+GVD LRV D S F + N
Sbjct: 451 EIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNL 510
Query: 357 QATVMMLGRYMGVRILSER 375
A +M G IL ++
Sbjct: 511 NAPSIMTGEKAADHILGKQ 529
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 43/319 (13%)
Query: 70 GAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSD 121
GA R K E+++ AGA+ SPQ+L SG + +I VV D P VG+ + D
Sbjct: 243 GADKRDLKKVMANKEVLLCAGAIASPQILQRSGVGESTFLKSMDIDVVHDLPGVGENLQD 302
Query: 122 NPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGEN--FAG---GSPSPRDYGMFSPK 176
+ +++ VSL + Y + A G F G G+ + + G F
Sbjct: 303 HL--EMYLQYKCKQPVSLYPALKW-----YNQPAIGAEWLFLGKGIGASNQFEAGGFIRS 355
Query: 177 IGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDN 236
+ + P Q +A A+ + F+ M S GH++L++++P ++
Sbjct: 356 SDEF-EWPNIQYHFLPVAINYNGSNAVKEHGFQAHV---GSMRSPSRGHIKLKSKDPFEH 411
Query: 237 PSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPR 296
PS+ FNY +D Q I +I+ + ++ E +S P L
Sbjct: 412 PSILFNYMSTEQDWQEFRAAIRITREIMHQPALDPYRGEEIS-----------PGKQL-- 458
Query: 297 HSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSP 352
+ T L+ F R+ T +H C++G+ VVDH +V G+ LRV+D S
Sbjct: 459 --STDTQLDDFVRNHAETAYHPSCSCKMGEDDMAVVDHQGRVHGLQGLRVVDASIMPLII 516
Query: 353 GTNPQATVMMLGRYMGVRI 371
N AT +M+ + +I
Sbjct: 517 TGNLNATTIMMAEKIADQI 535
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 131/312 (41%), Gaps = 58/312 (18%)
Query: 77 LKNGPKNEIIVSAGALGSPQLLMLSGA--------HNITVVLDQPLVGQGMSDNP----M 124
+K E+I+S GA+ +PQLLMLSG H I +V D P VG+ + D+ M
Sbjct: 241 VKTTDSGEVILSLGAVNTPQLLMLSGVGAAAELKEHGIALVHDLPEVGKNLQDHLDITLM 300
Query: 125 NAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVP 184
A +P+ V S I G+ SYI G + + S G K
Sbjct: 301 CAANSRTPIGVAFSFIPR-GLVGLFSYIFKRKGFLTSNVAES-----------GGFVKSS 348
Query: 185 PKQRTPEAIAEAIENMKALDDP----AFRGGFILEKV-MGPVSTGHLELRTRNPNDNPSV 239
P++ P + L D A G+ L + P S G + L++ NP D+P +
Sbjct: 349 PERDRPNLQFHFLPTY--LKDHGRKIAVGYGYTLHICDLLPKSRGRIGLKSANPMDDPLI 406
Query: 240 TFNYFKEPEDLQRCVQGISTIEKIIESKSFSK-FKYESMSVPILVNMTASAPVNLLPRHS 298
NY +PED++ + GI I ++ S +K FK E + P
Sbjct: 407 DPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAKHFKREIVPGP------------------ 448
Query: 299 NASTSLEQFC---RDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYS 351
A TS ++ R TI+H G C++GK VVD +V G+ +RV+D S
Sbjct: 449 -AVTSDDEIVADIRSRAETIYHPVGTCRMGKDPASVVDPCLQVRGLRNIRVVDASIMPNL 507
Query: 352 PGTNPQATVMML 363
N A +M+
Sbjct: 508 VAGNTNAPTIMI 519
>sp|B5Y008|BETA_KLEP3 Choline dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betA
PE=3 SV=1
Length = 554
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 126/303 (41%), Gaps = 47/303 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG N I VV D P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS + AGG R + P I Q +P
Sbjct: 313 SLYPALQWWNQPKIGAEWLFGGTGIGASNQFEAGGFIRSRAEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ L++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRLKSRDPHAHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I +I+ + K++ +S + L++F
Sbjct: 420 DWQEFRDAIRITREIMNQPALDKYRGREISPGT---------------ECQSDAELDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ +RV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGVRVVDASIMPQIITGNLNATTIMIG 524
Query: 365 RYM 367
M
Sbjct: 525 EKM 527
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 138/332 (41%), Gaps = 54/332 (16%)
Query: 60 AHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLD 111
A GVV+ D +A + + E+++ +GA+ SPQ+L SG +I VVLD
Sbjct: 235 AQGVVYLDG-----QAQITAHARREVLLCSGAIASPQILQRSGVGPGGWLRDLDIPVVLD 289
Query: 112 QPLVGQGMSDN-PMNAIF-VPSPVPVEVSLI----QVVGITQF--GSYIEAASGENFAGG 163
P VGQ + D+ M + PV + +L+ +GI G+ I AS AGG
Sbjct: 290 LPGVGQNLQDHLEMYMQYECKEPVSLYPALLLRNQPAIGIEWMLKGTGI-GASNHFEAGG 348
Query: 164 SPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVST 223
RD + P I Q +P +A A+ F+ M S
Sbjct: 349 FIRTRDDDPW-PNI-QYHFLP--------VAINYNGTNAIKMHGFQAHV---GSMRSPSR 395
Query: 224 GHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILV 283
G ++LR+R+P ++PS+ FNY E D + I +II + +F+ +S +
Sbjct: 396 GRVKLRSRDPREHPSILFNYMAEALDWREFRDAIRITREIIAQPALDRFRGRELSPGAEL 455
Query: 284 NMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDA 339
A ++ F R T +H C +G VVD + +V G++
Sbjct: 456 QSDA---------------QIDAFVRARAETAYHPSCSCAMGYDDMAVVDGEGRVHGLEG 500
Query: 340 LRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 371
LRV+D S N A +ML + RI
Sbjct: 501 LRVVDASIMPRITTGNLNAPTIMLAEKIADRI 532
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 129/319 (40%), Gaps = 61/319 (19%)
Query: 84 EIIVSAGALGSPQLLMLSG----AH----NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+IVSA + SP+LLMLSG AH I V +D+P VGQ + D+ S PV
Sbjct: 245 EVIVSASSFNSPKLLMLSGIGPAAHLKEMGIDVKVDRPGVGQNLQDHMEFYFQQVSTKPV 304
Query: 136 EV-----SLIQVVGITQFGSYIEAASGEN------FAGGSPSPRDYGMFSPKIGQLSKVP 184
+ Q V Q+ + N F +P G+ P I Q +P
Sbjct: 305 SLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESCAFLRSAP-----GVKQPDI-QYHFLP 358
Query: 185 PKQRTPEAIAEAIENMKALDDPAFRG--GFILEKVMGPVSTGHLELRTRNPNDNPSVTFN 242
+A + + A F+ G+ L K S G++ LR+ +P +P + FN
Sbjct: 359 --------VAISYDGKAAAKSHGFQVHVGYNLSK-----SRGNVSLRSSDPKADPVIRFN 405
Query: 243 YFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAST 302
Y PED ++ + +I K+F ++ P
Sbjct: 406 YMSHPEDWEKFRHCVRLTREIFGQKAFDLYR---------------GPEIQPGEKVQTDE 450
Query: 303 SLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNP 356
++ F R+ + + +H G C++G VVD + +V+GVD LRV D S F + N
Sbjct: 451 EIDGFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNL 510
Query: 357 QATVMMLGRYMGVRILSER 375
A +M G IL +
Sbjct: 511 NAPSIMTGEKSADHILGRQ 529
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 125/303 (41%), Gaps = 47/303 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG N I +V D P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS AGG R+ + P I Q +P
Sbjct: 313 SLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ +++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I +I+ + +++ +S L++F
Sbjct: 420 DWQEFRDAIRITREIMHQPALDQYRGREISPGT---------------ECQTDEQLDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ LRV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 365 RYM 367
M
Sbjct: 525 EKM 527
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 125/303 (41%), Gaps = 47/303 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG N I +V D P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS AGG R+ + P I Q +P
Sbjct: 313 SLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ +++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I +I+ + +++ +S L++F
Sbjct: 420 DWQEFRDAIRITREIMHQPALDQYRGREISPGT---------------ECQTDEQLDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ LRV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 365 RYM 367
M
Sbjct: 525 EKM 527
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 47/300 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG N I +V + P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS AGG R+ + P I Q +P
Sbjct: 313 SLYPALQWWNQPRIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ +++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I T +I+ + +++ +S + L++F
Sbjct: 420 DWQEFRDAIRTTREIMHQPALDQYRGREISPGV---------------ECQTDEQLDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ LRV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 47/303 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGA--------HNITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG +I +V D P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGSAELLAEFDIPLVHDLPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS AGG R+ + P I Q +P
Sbjct: 313 SLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ +++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I +I+ + +++ +S + L++F
Sbjct: 420 DWQEFRDAIRITREIMHQPALDQYRGREISPGV---------------ECQTDEQLDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ LRV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 365 RYM 367
M
Sbjct: 525 EKM 527
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 128/319 (40%), Gaps = 61/319 (19%)
Query: 84 EIIVSAGALGSPQLLMLSG----AH----NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+IVSA + SP+LLMLSG AH I V D+P VGQ + D+ S PV
Sbjct: 245 EVIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQDHMEFYFQQVSTKPV 304
Query: 136 EV-----SLIQVVGITQFGSYIEAASGEN------FAGGSPSPRDYGMFSPKIGQLSKVP 184
+ Q V Q+ + N F +P G+ P I Q +P
Sbjct: 305 SLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESCAFLRSAP-----GVKQPDI-QYHFLP 358
Query: 185 PKQRTPEAIAEAIENMKALDDPAFRG--GFILEKVMGPVSTGHLELRTRNPNDNPSVTFN 242
+A + + A F+ G+ L K S G + LR+ +P +P + FN
Sbjct: 359 --------VAISYDGKAAAKSHGFQVHVGYNLSK-----SRGDVTLRSSDPKADPVIRFN 405
Query: 243 YFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAST 302
Y PED ++ + +I K+F ++ P
Sbjct: 406 YMSHPEDWEKFRHCVRLTREIFGQKAFDLYR---------------GPEIQPGEKVRTDE 450
Query: 303 SLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNP 356
++ F R+ + + +H G C++G VVD + +V+GVD LRV D S F + N
Sbjct: 451 EIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNL 510
Query: 357 QATVMMLGRYMGVRILSER 375
A +M G IL ++
Sbjct: 511 NAPSIMTGEKAADHILGKQ 529
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 129/322 (40%), Gaps = 48/322 (14%)
Query: 82 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+ E+I++A ++ SP+LLMLSG H I VV D+P VGQ + D+ I
Sbjct: 243 RREVIIAASSINSPKLLMLSGIGPAAQLKEHGIEVVADRPGVGQNLQDHLEVYIQQECTQ 302
Query: 134 PVEV-SLIQVVGITQFGS---YIEAASG--ENFAGGSPSPRDYGMFSPKIGQLSKVPPKQ 187
P+ + S + + + G+ + + G +F + G+ P I Q +P
Sbjct: 303 PITLYSKLNLFSKAKIGAEWLFFKTGDGATNHFESAAFLRSKAGVEYPDI-QYHFLPVAI 361
Query: 188 RTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEP 247
R A +A P M S G + LR+ NP + P + FNY
Sbjct: 362 RYDGKAAAQSHGFQAHVGP-----------MRSKSRGSVTLRSANPREKPVIKFNYMSHE 410
Query: 248 EDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQF 307
+D + +I +F+ ++ + H + ++ F
Sbjct: 411 DDWADFRHCVRLTREIFGQAAFNPYRGAEIQPGA---------------HVQSDDEIDNF 455
Query: 308 CRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVM 361
++ V + +H G C++G VVD + +V+GV+ LRV D S F N +
Sbjct: 456 IKEHVESAFHPCGTCKMGAVDDPMAVVDAECRVIGVEGLRVADSSIFPRITNGNLNGPSI 515
Query: 362 MLGRYMGVRILSER-LASNDSK 382
M+G IL LA +D +
Sbjct: 516 MVGEKASDHILGRTPLARSDQE 537
>sp|B1Z034|BETA_BURA4 Choline dehydrogenase OS=Burkholderia ambifaria (strain MC40-6)
GN=betA PE=3 SV=1
Length = 566
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 141/359 (39%), Gaps = 70/359 (19%)
Query: 50 FCSELKARP----VAHGVVFR---DATGAKHRAYLKNGPK------NEIIVSAGALGSPQ 96
+ + K RP V H + R D A YL+ + E++V +GA+ SPQ
Sbjct: 207 YLDQAKGRPNLEIVTHALADRILFDGKRASGVTYLRGSERANAHARREVLVCSGAIASPQ 266
Query: 97 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 136
LL SG +I +VLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 137 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 196
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 197 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 256
A++ F+ M S G ++LR+R+PN +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNAHPSILFNYMAEALDWREFRDA 428
Query: 257 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 316
I +I+ + +++ + N A + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDTFVRSRAETAF 473
Query: 317 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 371
H C++G VVD + +V G++ LRV+D S N A +M+ + +I
Sbjct: 474 HPSCSCKMGYDDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|A9AMZ9|BETA_BURM1 Choline dehydrogenase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=betA PE=3 SV=1
Length = 566
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 144/363 (39%), Gaps = 70/363 (19%)
Query: 50 FCSELKARP----VAHGVVFR---DATGAKHRAYLKNGPK------NEIIVSAGALGSPQ 96
+ + K RP V H + R D A YL+ + E++V +GA+ SPQ
Sbjct: 207 YLDQAKTRPNLEIVTHALADRILFDGKRASGVTYLRGNERATAHARREVLVCSGAIASPQ 266
Query: 97 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 136
LL SG +I +VLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 137 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 196
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 197 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 256
A++ F+ M S G ++LR+R+PN +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNAHPSILFNYMAEALDWREFRDA 428
Query: 257 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 316
I +I+ + +++ ++ P L + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGRELN-----------PGADL----KSDKELDAFVRARAETAF 473
Query: 317 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 372
H C++G VVD++ +V G++ LRV+D S N A +M+ + +I
Sbjct: 474 HPSCSCKMGYDDMAVVDNEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIADKIR 533
Query: 373 SER 375
+
Sbjct: 534 GRK 536
>sp|Q0B711|BETA_BURCM Choline dehydrogenase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=betA PE=3 SV=1
Length = 566
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 141/359 (39%), Gaps = 70/359 (19%)
Query: 50 FCSELKARP----VAHGVVFR---DATGAKHRAYLKNGPK------NEIIVSAGALGSPQ 96
+ + K RP V H + R D A YL+ + E++V +GA+ SPQ
Sbjct: 207 YLDQAKGRPNLEIVTHALADRILFDGKRASGVTYLRGSERASAHARREVLVCSGAIASPQ 266
Query: 97 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 136
LL SG +I +VLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 137 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 196
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 197 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 256
A++ F+ M S G ++LR+R+PN +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNAHPSILFNYMAEALDWREFRDA 428
Query: 257 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 316
I +I+ + +++ + N A + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDTFVRARAETAF 473
Query: 317 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 371
H C++G VVD + +V G++ LRV+D S N A +M+ + +I
Sbjct: 474 HPSCSCKMGYDDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 47/303 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG N I +V + P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS AGG R+ + P I Q +P
Sbjct: 313 SLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ +++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I +I+ + +++ +S + L++F
Sbjct: 420 DWQEFRDAIRITREIMHQPALDQYRGREISPGV---------------ECQTDEQLDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ LRV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMAVVDAEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 365 RYM 367
M
Sbjct: 525 EKM 527
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 47/303 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG N I +V + P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS AGG R+ + P I Q +P
Sbjct: 313 SLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ +++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I +I+ + +++ +S + L++F
Sbjct: 420 DWQEFRDAIRITREIMHQPALDQYRGREISPGV---------------ECQTDEQLDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ LRV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMAVVDAEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 365 RYM 367
M
Sbjct: 525 EKM 527
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 146/355 (41%), Gaps = 62/355 (17%)
Query: 50 FCSELKARP----VAHGVVFRDATGAKHR---AYLKNG------PKNEIIVSAGALGSPQ 96
+ K RP V H V R K AYL +G + E++V +GA+ SPQ
Sbjct: 207 YLDRAKTRPNLTIVTHAVTDRVLFSGKRAVGVAYLHHGNAVNAQARREVLVCSGAIASPQ 266
Query: 97 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS-LIQ-----V 142
LL SG ++ +V D P VG+ + D+ I P+ + +Q
Sbjct: 267 LLQRSGVGRSTWLRELDVPLVHDLPGVGENLQDHLEMYIQYECKEPISLYPALQWWNQPA 326
Query: 143 VGITQF--GSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENM 200
+G+ G+ I AS + AGG RD ++ P I Q +P +A
Sbjct: 327 IGLEWMLKGTGI-GASNQFEAGGFIRTRDDDLW-PNI-QYHFLP--------VAINYNGS 375
Query: 201 KALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTI 260
A+ F+ M S G ++L +R+PN +PS+ FNY +P D + GI
Sbjct: 376 NAIKMHGFQAHV---GSMRSPSRGRVKLTSRDPNAHPSILFNYMADPLDWREFRDGIRIT 432
Query: 261 EKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHG 320
+I+ + +++ ++ P L L+ F R T +H
Sbjct: 433 REIMRQPALDRYRGRELN-----------PGAEL----TTDEQLDTFVRMRAETAFHPSC 477
Query: 321 GCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 371
C++G VVD++ +V G++ALRV+D S N A +ML + RI
Sbjct: 478 SCKMGYDDMAVVDNEGRVHGMEALRVVDASIMPRITTGNLNAPTIMLAEKIADRI 532
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 122/307 (39%), Gaps = 69/307 (22%)
Query: 69 TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMS 120
G HRAY E+I+S GA+ SPQLLMLSG N I VV P VGQ +
Sbjct: 280 NGQSHRAY----ASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQ 335
Query: 121 DNPMNAIFVPSPVPVEVSLIQ------VVGITQFGSYI-EAASGENFAGG-------SPS 166
D+ I P+ + Q +G+ + E A+ GG P
Sbjct: 336 DHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPH 395
Query: 167 PRDYGMFSP-KIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGH 225
P F P ++ +VP +Q EA + M+ S G
Sbjct: 396 PDIQFHFLPSQVIDHGRVPTQQ---EAYQVHVGPMRG------------------TSVGW 434
Query: 226 LELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNM 285
L+LR+ NP D+P + NY D++ + +I ++ + F+ + +
Sbjct: 435 LKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQ------- 487
Query: 286 TASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDA 339
P + H + ++ F R + +H C++G+ VVD +VLGV+
Sbjct: 488 ----PGS----HIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVEN 539
Query: 340 LRVIDGS 346
LRV+D S
Sbjct: 540 LRVVDAS 546
>sp|Q63KK7|BETA_BURPS Choline dehydrogenase OS=Burkholderia pseudomallei (strain K96243)
GN=betA PE=3 SV=1
Length = 565
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 130/318 (40%), Gaps = 57/318 (17%)
Query: 82 KNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+ E++V +GA+ SPQLL SG +I VVLD P VG+ + D+ I
Sbjct: 252 RREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKE 311
Query: 134 PV------------EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLS 181
PV ++ L ++ T G AS AGG RD + P I Q
Sbjct: 312 PVSLYPALKWWNQPKIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYH 364
Query: 182 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 241
+P +A A++ F+ M S G ++L++R+P+ +PS+ F
Sbjct: 365 FLP--------VAINYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLKSRDPHAHPSILF 413
Query: 242 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 301
NY E D + I +I+ + +F+ ++ P L +
Sbjct: 414 NYMAEALDWREFRDAIRATREIMRQPALDRFRGRELN-----------PGADL----KSD 458
Query: 302 TSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 357
L+ F R T +H C++G VVD++ +V G+D LRV+D S N
Sbjct: 459 NELDTFVRARAETAFHPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLN 518
Query: 358 ATVMMLGRYMGVRILSER 375
A +M+ + RI +
Sbjct: 519 APTIMIAEKIADRIRQHK 536
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 126/315 (40%), Gaps = 49/315 (15%)
Query: 82 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIF---VP 130
KNE+I SAG++GS QLL LSG +T V P VGQ + D+ + F
Sbjct: 248 KNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVHHLPGVGQNLQDH-LEVYFQYHCQ 306
Query: 131 SPVPVEVSLIQ----VVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPK 186
P+ + L ++G + + +F + G+ P I Q +P
Sbjct: 307 KPITLNGKLDWFSKGLIGAEWILTRKGLGATNHFESCAFIRSRAGLKWPNI-QYHFLPAA 365
Query: 187 QRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKE 246
R + A D F+ K P S G +E+ + NP+D P + FNY
Sbjct: 366 MR--------YDGQAAFDGHGFQVHVGPNK---PESRGRVEIVSANPSDKPKIQFNYLST 414
Query: 247 PEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQ 306
D Q I +I+ + +F+ E + I V A ++Q
Sbjct: 415 ERDRQDWRDCIRLTREILAQPAMDEFRGEEIQPGINVATDA---------------EIDQ 459
Query: 307 FCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATV 360
+ ++ V + +H C++G V+D + +V G+ LRV+D S F P N A
Sbjct: 460 WVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNLNAPT 519
Query: 361 MMLGRYMGVRILSER 375
+M+ IL ++
Sbjct: 520 IMVAERAADLILHKQ 534
>sp|Q62CH8|BETA_BURMA Choline dehydrogenase OS=Burkholderia mallei (strain ATCC 23344)
GN=betA PE=3 SV=1
Length = 565
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 130/318 (40%), Gaps = 57/318 (17%)
Query: 82 KNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+ E++V +GA+ SPQLL SG +I VVLD P VG+ + D+ I
Sbjct: 252 RREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKE 311
Query: 134 PV------------EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLS 181
PV ++ L ++ T G AS AGG RD + P I Q
Sbjct: 312 PVSLYPALKWWNQPKIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYH 364
Query: 182 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 241
+P +A A++ F+ M S G ++L++R+P+ +PS+ F
Sbjct: 365 FLP--------VAINYNGSNAIEMHGFQAHV---GSMRSPSCGRVKLKSRDPHAHPSILF 413
Query: 242 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 301
NY E D + I +I+ + +F+ ++ P L +
Sbjct: 414 NYMAEALDWREFRDAIRATREIMRQPALDRFRGRELN-----------PGADL----KSD 458
Query: 302 TSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 357
L+ F R T +H C++G VVD++ +V G+D LRV+D S N
Sbjct: 459 NELDTFVRARAETAFHPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLN 518
Query: 358 ATVMMLGRYMGVRILSER 375
A +M+ + RI +
Sbjct: 519 APTIMIAEKIADRIRKHK 536
>sp|Q3JLL7|BETA_BURP1 Choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b)
GN=betA PE=3 SV=1
Length = 565
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 130/318 (40%), Gaps = 57/318 (17%)
Query: 82 KNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPV 133
+ E++V +GA+ SPQLL SG +I VVLD P VG+ + D+ I
Sbjct: 252 RREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKE 311
Query: 134 PV------------EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLS 181
PV ++ L ++ T G AS AGG RD + P I Q
Sbjct: 312 PVSLYPALKWWNQPKIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYH 364
Query: 182 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 241
+P +A A++ F+ M S G ++L++R+P+ +PS+ F
Sbjct: 365 FLP--------VAINYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLKSRDPHAHPSILF 413
Query: 242 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 301
NY E D + I +I+ + +F+ ++ P L +
Sbjct: 414 NYMAEALDWREFRDAIRATREIMRQPALDRFRGRELN-----------PGADL----KSD 458
Query: 302 TSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 357
L+ F R T +H C++G VVD++ +V G+D LRV+D S N
Sbjct: 459 NELDTFVRARAETAFHPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLN 518
Query: 358 ATVMMLGRYMGVRILSER 375
A +M+ + RI +
Sbjct: 519 APTIMIAEKIADRIRKHK 536
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 125/315 (39%), Gaps = 49/315 (15%)
Query: 82 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIF---VP 130
KNE+I SAG++GS QLL LSG +T V P VGQ + D+ + F
Sbjct: 248 KNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVYHLPGVGQNLQDH-LEVYFQYHCQ 306
Query: 131 SPVPVEVSLIQ----VVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPK 186
P+ + L ++G + + +F + G+ P I Q +P
Sbjct: 307 KPITLNGKLDWFSKGLIGTEWILTRKGLGATNHFESCAFIRSRAGLKWPNI-QYHFLPAA 365
Query: 187 QRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKE 246
R + A D F+ K P S G +E+ + NP D P + FNY
Sbjct: 366 MR--------YDGQAAFDGHGFQVHVGPNK---PESRGRVEIVSANPLDKPKIQFNYLST 414
Query: 247 PEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQ 306
D Q I +I+ + +F+ E + I V A ++Q
Sbjct: 415 ERDRQDWRDCIRLTREILAQPAMDEFRGEEIQPGINVATDA---------------EIDQ 459
Query: 307 FCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATV 360
+ ++ V + +H C++G V+D + +V G+ LRV+D S F P N A
Sbjct: 460 WVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNLNAPT 519
Query: 361 MMLGRYMGVRILSER 375
+M+ IL ++
Sbjct: 520 IMVAERAADLILHKQ 534
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 125/300 (41%), Gaps = 47/300 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG N I +V + P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS AGG R+ + P I Q +P
Sbjct: 313 SLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ +++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I +I+ + +++ +S + L++F
Sbjct: 420 DWQEFRDAIRITREIMHQPALDQYRGREISPGV---------------ECQTDEQLDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ LRV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 125/300 (41%), Gaps = 47/300 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG N I +V + P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS AGG R+ + P I Q +P
Sbjct: 313 SLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ +++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I +I+ + +++ +S + L++F
Sbjct: 420 DWQEFRDAIRITREIMHQPALDQYRGREISPGV---------------ECQTDEQLDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ LRV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 125/300 (41%), Gaps = 47/300 (15%)
Query: 84 EIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 135
E+++ AGA+ SPQ+L SG N I +V + P VG+ + D+ + PV
Sbjct: 253 EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEPV 312
Query: 136 EV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQR 188
+ + ++ FG AS AGG R+ + P I Q +P
Sbjct: 313 SLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI-QYHFLP---- 366
Query: 189 TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE 248
+A A+ + F+ M S GH+ +++R+P+ +P++ FNY +
Sbjct: 367 ----VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQ 419
Query: 249 DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC 308
D Q I +I+ + +++ +S + L++F
Sbjct: 420 DWQEFRDAIRITREIMHQPALDQYRGREISPGV---------------ECQTDEQLDEFV 464
Query: 309 RDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 364
R+ T +H G C++G VVD + +V G++ LRV+D S N AT +M+G
Sbjct: 465 RNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,455,675
Number of Sequences: 539616
Number of extensions: 6422090
Number of successful extensions: 14465
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 13988
Number of HSP's gapped (non-prelim): 334
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)