Query 016822
Match_columns 382
No_of_seqs 142 out of 1509
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238 Glucose dehydrogenase/ 100.0 8.1E-59 1.7E-63 464.6 25.8 321 37-380 269-621 (623)
2 PLN02785 Protein HOTHEAD 100.0 4.6E-58 9.9E-63 473.1 28.1 342 36-380 234-585 (587)
3 PRK02106 choline dehydrogenase 100.0 7.5E-54 1.6E-58 443.1 22.7 322 17-375 193-535 (560)
4 TIGR01810 betA choline dehydro 100.0 1.6E-53 3.4E-58 438.4 21.0 320 19-374 188-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 2.1E-45 4.4E-50 376.8 18.6 300 37-373 218-535 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 2.5E-39 5.3E-44 328.6 24.1 292 37-374 229-542 (544)
7 PF05199 GMC_oxred_C: GMC oxid 100.0 6E-35 1.3E-39 249.6 11.2 136 220-367 1-144 (144)
8 PF00732 GMC_oxred_N: GMC oxid 99.8 4.5E-20 9.7E-25 176.2 0.0 101 15-123 183-295 (296)
9 PRK12835 3-ketosteroid-delta-1 95.3 0.028 6E-07 59.1 5.9 56 36-100 227-283 (584)
10 PRK07843 3-ketosteroid-delta-1 94.6 0.076 1.7E-06 55.4 6.8 55 36-100 222-276 (557)
11 PRK12844 3-ketosteroid-delta-1 94.5 0.074 1.6E-06 55.6 6.3 54 36-99 222-276 (557)
12 PRK12837 3-ketosteroid-delta-1 94.4 0.092 2E-06 54.2 6.7 55 36-100 188-243 (513)
13 PRK08274 tricarballylate dehyd 94.1 0.12 2.7E-06 52.5 6.9 56 36-101 145-200 (466)
14 PF00890 FAD_binding_2: FAD bi 94.1 0.076 1.6E-06 53.0 5.3 54 36-100 155-209 (417)
15 KOG2404 Fumarate reductase, fl 94.0 0.065 1.4E-06 51.2 4.2 56 37-102 160-217 (477)
16 PRK12839 hypothetical protein; 93.7 0.17 3.7E-06 53.1 7.2 54 36-98 228-282 (572)
17 PRK07121 hypothetical protein; 93.3 0.21 4.5E-06 51.3 6.9 56 36-100 191-247 (492)
18 PRK12845 3-ketosteroid-delta-1 93.0 0.25 5.3E-06 51.7 7.1 54 36-99 231-285 (564)
19 TIGR01813 flavo_cyto_c flavocy 92.3 0.27 5.9E-06 49.5 6.1 55 36-99 144-199 (439)
20 PRK06134 putative FAD-binding 92.2 0.36 7.9E-06 50.7 7.0 53 36-98 231-283 (581)
21 PRK12843 putative FAD-binding 91.4 0.36 7.9E-06 50.6 6.0 54 36-99 235-289 (578)
22 PRK05675 sdhA succinate dehydr 91.3 0.41 8.8E-06 50.2 6.3 50 36-94 140-190 (570)
23 PRK06263 sdhA succinate dehydr 91.3 0.41 8.9E-06 49.8 6.3 50 36-94 148-198 (543)
24 TIGR01811 sdhA_Bsu succinate d 91.3 0.43 9.2E-06 50.4 6.4 50 36-94 147-197 (603)
25 PRK13977 myosin-cross-reactive 90.8 0.57 1.2E-05 48.8 6.5 54 36-93 240-293 (576)
26 PRK07573 sdhA succinate dehydr 90.7 0.5 1.1E-05 50.2 6.3 49 36-94 184-233 (640)
27 TIGR01816 sdhA_forward succina 90.7 0.52 1.1E-05 49.4 6.3 49 36-94 133-182 (565)
28 PRK12834 putative FAD-binding 90.1 0.79 1.7E-05 47.8 7.1 54 37-100 167-235 (549)
29 PRK09078 sdhA succinate dehydr 90.1 0.56 1.2E-05 49.4 6.0 50 36-94 163-213 (598)
30 PRK06452 sdhA succinate dehydr 89.9 0.66 1.4E-05 48.6 6.3 48 36-93 150-198 (566)
31 PRK06481 fumarate reductase fl 89.3 0.97 2.1E-05 46.6 6.9 55 36-100 204-259 (506)
32 PRK08958 sdhA succinate dehydr 89.2 0.8 1.7E-05 48.2 6.3 50 36-94 157-207 (588)
33 PTZ00139 Succinate dehydrogena 89.2 0.77 1.7E-05 48.6 6.2 50 36-94 180-230 (617)
34 PRK08071 L-aspartate oxidase; 88.5 0.89 1.9E-05 47.0 6.0 49 36-94 143-191 (510)
35 PTZ00306 NADH-dependent fumara 88.5 0.86 1.9E-05 51.9 6.3 55 36-95 561-622 (1167)
36 PRK12842 putative succinate de 88.4 1.1 2.4E-05 46.9 6.8 51 36-96 228-278 (574)
37 PRK08626 fumarate reductase fl 88.3 0.85 1.8E-05 48.7 5.9 49 36-94 172-221 (657)
38 PRK06175 L-aspartate oxidase; 88.2 0.99 2.1E-05 45.6 6.0 48 36-94 143-190 (433)
39 PLN00128 Succinate dehydrogena 87.9 1 2.2E-05 47.9 6.1 50 36-94 201-251 (635)
40 TIGR01812 sdhA_frdA_Gneg succi 87.5 1.2 2.5E-05 46.7 6.3 49 36-94 143-192 (566)
41 PRK08641 sdhA succinate dehydr 87.1 1.2 2.6E-05 46.9 6.0 49 37-94 152-201 (589)
42 PRK08275 putative oxidoreducta 86.5 1.4 3.1E-05 45.9 6.2 49 36-93 151-200 (554)
43 PRK07395 L-aspartate oxidase; 86.4 1.3 2.8E-05 46.3 5.7 50 36-94 149-198 (553)
44 PRK07803 sdhA succinate dehydr 86.4 1.4 3.1E-05 46.7 6.2 48 37-94 166-214 (626)
45 TIGR03378 glycerol3P_GlpB glyc 85.9 2 4.4E-05 43.1 6.6 54 37-102 278-331 (419)
46 PRK09231 fumarate reductase fl 85.4 1.8 4E-05 45.4 6.4 48 37-94 149-197 (582)
47 PLN02815 L-aspartate oxidase 85.4 1.6 3.4E-05 46.1 5.8 51 36-94 170-223 (594)
48 PF01266 DAO: FAD dependent ox 85.3 1.1 2.3E-05 43.0 4.2 51 36-102 161-211 (358)
49 PRK07512 L-aspartate oxidase; 84.4 1.9 4.1E-05 44.6 5.9 48 36-94 151-198 (513)
50 TIGR01176 fum_red_Fp fumarate 84.2 2.1 4.6E-05 45.0 6.2 48 37-94 148-196 (580)
51 TIGR02061 aprA adenosine phosp 84.2 2 4.4E-05 45.4 6.1 50 37-93 141-191 (614)
52 PRK09077 L-aspartate oxidase; 84.2 1.9 4.2E-05 44.8 5.8 53 37-94 154-208 (536)
53 PRK08205 sdhA succinate dehydr 84.1 2 4.3E-05 45.2 5.9 53 36-94 154-207 (583)
54 PRK07057 sdhA succinate dehydr 84.0 2.2 4.8E-05 44.9 6.3 50 36-94 162-212 (591)
55 PRK05945 sdhA succinate dehydr 83.5 2.6 5.6E-05 44.3 6.5 49 36-94 149-198 (575)
56 PRK13800 putative oxidoreducta 82.5 2.7 5.9E-05 46.6 6.4 49 36-94 157-206 (897)
57 PRK06854 adenylylsulfate reduc 82.4 2.7 5.9E-05 44.4 6.2 47 37-93 148-195 (608)
58 PRK06069 sdhA succinate dehydr 82.4 2.5 5.5E-05 44.3 5.9 48 36-93 152-200 (577)
59 COG0029 NadB Aspartate oxidase 82.1 1.5 3.4E-05 44.4 3.9 65 11-93 132-196 (518)
60 TIGR03377 glycerol3P_GlpA glyc 82.1 3.7 8.1E-05 42.4 7.0 56 36-102 142-198 (516)
61 PRK11101 glpA sn-glycerol-3-ph 80.7 3.2 6.9E-05 43.3 5.9 56 36-102 163-219 (546)
62 PRK07804 L-aspartate oxidase; 79.8 4 8.6E-05 42.5 6.2 50 36-94 158-211 (541)
63 TIGR00551 nadB L-aspartate oxi 79.6 3.6 7.9E-05 42.2 5.9 48 36-94 143-190 (488)
64 PLN02464 glycerol-3-phosphate 78.8 3.8 8.2E-05 43.5 5.8 58 36-102 246-304 (627)
65 COG0578 GlpA Glycerol-3-phosph 77.9 1.5 3.3E-05 45.2 2.4 54 37-102 179-233 (532)
66 PF13454 NAD_binding_9: FAD-NA 75.3 2.1 4.7E-05 36.6 2.3 66 8-91 90-155 (156)
67 TIGR02485 CobZ_N-term precorri 71.8 9 0.00019 38.5 6.2 53 36-99 137-189 (432)
68 TIGR02733 desat_CrtD C-3',4' d 68.6 7.4 0.00016 39.8 4.9 52 36-97 246-298 (492)
69 KOG4254 Phytoene desaturase [C 66.3 5.2 0.00011 40.3 3.0 45 37-95 279-323 (561)
70 TIGR02731 phytoene_desat phyto 66.0 8 0.00017 39.0 4.5 47 36-91 227-274 (453)
71 PF13738 Pyr_redox_3: Pyridine 66.0 11 0.00023 33.2 4.8 52 36-102 96-147 (203)
72 PRK05329 anaerobic glycerol-3- 65.1 12 0.00027 37.6 5.5 50 36-97 273-322 (422)
73 PF12831 FAD_oxidored: FAD dep 63.7 2.3 5E-05 42.9 0.0 53 36-102 104-156 (428)
74 PRK06185 hypothetical protein; 63.4 14 0.00031 36.4 5.7 46 37-93 124-169 (407)
75 TIGR02730 carot_isom carotene 62.9 9.4 0.0002 39.1 4.3 50 36-99 243-292 (493)
76 PRK04176 ribulose-1,5-biphosph 62.0 17 0.00038 33.9 5.6 48 36-92 118-172 (257)
77 COG1252 Ndh NADH dehydrogenase 61.9 8.7 0.00019 38.4 3.7 49 326-377 280-333 (405)
78 KOG2495 NADH-dehydrogenase (ub 59.9 11 0.00023 37.8 3.8 45 323-373 345-390 (491)
79 PF06100 Strep_67kDa_ant: Stre 59.3 15 0.00033 37.6 4.9 52 37-92 222-273 (500)
80 COG1053 SdhA Succinate dehydro 58.7 13 0.00027 39.0 4.4 74 38-125 155-241 (562)
81 TIGR02734 crtI_fam phytoene de 57.8 44 0.00095 34.2 8.2 50 36-99 233-282 (502)
82 PTZ00318 NADH dehydrogenase-li 57.6 21 0.00045 35.9 5.7 50 327-377 298-349 (424)
83 TIGR02734 crtI_fam phytoene de 57.4 12 0.00026 38.3 4.0 39 333-375 454-492 (502)
84 COG3634 AhpF Alkyl hydroperoxi 56.2 25 0.00054 34.5 5.5 57 35-101 403-460 (520)
85 PRK07208 hypothetical protein; 55.6 17 0.00038 36.8 4.8 53 36-97 232-284 (479)
86 PRK05257 malate:quinone oxidor 55.2 30 0.00066 35.6 6.5 55 37-102 199-254 (494)
87 PF01134 GIDA: Glucose inhibit 54.5 12 0.00025 37.4 3.1 39 41-93 114-152 (392)
88 TIGR03169 Nterm_to_SelD pyridi 54.0 25 0.00054 34.2 5.4 52 326-377 260-312 (364)
89 TIGR01320 mal_quin_oxido malat 53.9 51 0.0011 33.8 7.8 56 36-102 192-248 (483)
90 PTZ00383 malate:quinone oxidor 53.8 30 0.00066 35.6 6.2 41 332-373 433-473 (497)
91 TIGR02733 desat_CrtD C-3',4' d 52.1 30 0.00065 35.3 5.9 35 335-373 456-490 (492)
92 TIGR02732 zeta_caro_desat caro 51.2 24 0.00051 36.1 4.9 56 36-98 233-289 (474)
93 PRK12266 glpD glycerol-3-phosp 50.9 33 0.00073 35.3 6.0 52 36-99 169-221 (508)
94 PF13434 K_oxygenase: L-lysine 49.7 15 0.00033 35.8 3.1 50 39-97 112-161 (341)
95 PRK13369 glycerol-3-phosphate 49.1 32 0.00069 35.4 5.5 52 36-99 169-220 (502)
96 PLN02487 zeta-carotene desatur 47.8 28 0.0006 36.6 4.8 57 36-98 309-365 (569)
97 KOG1298 Squalene monooxygenase 47.6 15 0.00033 36.4 2.6 47 40-96 165-211 (509)
98 COG1233 Phytoene dehydrogenase 45.7 25 0.00055 36.0 4.1 50 36-100 238-287 (487)
99 TIGR02352 thiamin_ThiO glycine 43.6 33 0.00072 32.5 4.4 42 36-92 151-192 (337)
100 COG0579 Predicted dehydrogenas 43.3 93 0.002 31.5 7.6 52 36-102 167-219 (429)
101 PRK15317 alkyl hydroperoxide r 40.6 69 0.0015 33.0 6.5 56 36-101 401-457 (517)
102 PLN02661 Putative thiazole syn 40.6 51 0.0011 32.5 5.1 47 37-93 188-244 (357)
103 PRK07057 sdhA succinate dehydr 40.3 45 0.00098 35.1 5.1 53 322-374 359-425 (591)
104 PF06039 Mqo: Malate:quinone o 39.6 1.1E+02 0.0025 31.2 7.4 77 36-133 196-273 (488)
105 TIGR01373 soxB sarcosine oxida 39.5 56 0.0012 32.2 5.5 52 36-102 197-248 (407)
106 PRK00711 D-amino acid dehydrog 39.1 64 0.0014 31.8 5.8 48 36-99 215-262 (416)
107 PF03486 HI0933_like: HI0933-l 38.7 55 0.0012 32.9 5.2 47 36-96 123-169 (409)
108 KOG0042 Glycerol-3-phosphate d 38.3 21 0.00046 36.9 2.1 52 39-99 241-293 (680)
109 PLN02985 squalene monooxygenas 38.1 54 0.0012 33.9 5.2 46 44-99 169-214 (514)
110 TIGR01292 TRX_reduct thioredox 37.5 98 0.0021 28.6 6.6 55 36-101 191-246 (300)
111 COG4895 Uncharacterized conser 35.1 27 0.00058 24.3 1.6 24 95-118 34-59 (63)
112 KOG2311 NAD/FAD-utilizing prot 34.8 31 0.00067 35.3 2.6 52 36-97 139-190 (679)
113 PRK11259 solA N-methyltryptoph 33.0 75 0.0016 30.8 5.1 46 36-98 163-208 (376)
114 TIGR03140 AhpF alkyl hydropero 32.1 1.3E+02 0.0027 31.1 6.8 54 36-99 402-456 (515)
115 PRK07121 hypothetical protein; 31.9 74 0.0016 32.5 5.0 55 320-374 425-490 (492)
116 PF13807 GNVR: G-rich domain o 31.8 69 0.0015 24.0 3.6 33 336-368 37-69 (82)
117 TIGR00292 thiazole biosynthesi 31.4 88 0.0019 29.1 5.0 58 36-101 114-179 (254)
118 PRK05675 sdhA succinate dehydr 31.3 88 0.0019 32.8 5.5 50 324-373 339-403 (570)
119 PF10865 DUF2703: Domain of un 31.0 1.4E+02 0.0031 24.5 5.5 85 248-339 20-105 (120)
120 PRK11728 hydroxyglutarate oxid 30.7 1.1E+02 0.0023 30.2 5.8 50 36-102 163-212 (393)
121 PRK13339 malate:quinone oxidor 30.0 1.4E+02 0.0029 30.9 6.5 55 37-102 200-255 (497)
122 PRK12842 putative succinate de 29.8 1.1E+02 0.0023 32.2 5.8 53 327-379 509-571 (574)
123 PLN00128 Succinate dehydrogena 29.7 1E+02 0.0022 32.9 5.7 51 324-374 400-465 (635)
124 PLN02172 flavin-containing mon 29.6 65 0.0014 32.8 4.1 53 39-102 130-182 (461)
125 PRK08401 L-aspartate oxidase; 28.0 97 0.0021 31.5 5.1 54 315-373 306-364 (466)
126 PRK08958 sdhA succinate dehydr 27.9 92 0.002 32.8 5.0 52 323-374 356-422 (588)
127 TIGR03197 MnmC_Cterm tRNA U-34 27.0 1.1E+02 0.0023 30.0 5.0 41 37-92 149-189 (381)
128 PRK06126 hypothetical protein; 26.5 1.2E+02 0.0027 31.3 5.6 47 37-94 142-189 (545)
129 PRK08205 sdhA succinate dehydr 26.3 1.2E+02 0.0026 31.9 5.5 51 323-373 355-416 (583)
130 TIGR01816 sdhA_forward succina 26.2 93 0.002 32.6 4.6 50 324-373 331-394 (565)
131 PRK12810 gltD glutamate syntha 26.2 1.6E+02 0.0034 30.0 6.2 57 36-102 343-410 (471)
132 PRK12839 hypothetical protein; 25.8 1.2E+02 0.0025 32.0 5.3 47 327-373 510-566 (572)
133 PRK05192 tRNA uridine 5-carbox 25.5 69 0.0015 34.0 3.4 38 42-93 120-157 (618)
134 TIGR00136 gidA glucose-inhibit 25.4 50 0.0011 35.0 2.4 45 42-99 116-160 (617)
135 PRK12844 3-ketosteroid-delta-1 25.3 1.2E+02 0.0026 31.7 5.3 54 323-376 487-551 (557)
136 PRK07233 hypothetical protein; 25.0 79 0.0017 31.2 3.7 46 37-97 213-258 (434)
137 PRK12843 putative FAD-binding 24.6 1.5E+02 0.0034 31.0 6.0 50 326-375 513-572 (578)
138 PRK12409 D-amino acid dehydrog 24.5 1.4E+02 0.003 29.5 5.3 53 36-100 211-264 (410)
139 TIGR03833 conserved hypothetic 24.4 39 0.00085 24.1 1.0 23 95-117 33-57 (62)
140 PTZ00139 Succinate dehydrogena 24.3 1.3E+02 0.0027 32.1 5.2 52 323-374 378-444 (617)
141 PRK10262 thioredoxin reductase 24.1 2E+02 0.0044 27.2 6.3 53 36-98 199-253 (321)
142 PLN02612 phytoene desaturase 24.0 79 0.0017 33.2 3.6 42 36-90 322-363 (567)
143 COG2081 Predicted flavoprotein 23.9 1E+02 0.0022 30.7 4.1 64 303-369 325-400 (408)
144 PRK12845 3-ketosteroid-delta-1 23.1 1.3E+02 0.0027 31.6 4.9 47 327-373 507-563 (564)
145 PRK12831 putative oxidoreducta 23.0 2.4E+02 0.0053 28.6 6.9 54 36-98 332-401 (464)
146 PF00743 FMO-like: Flavin-bind 22.9 44 0.00095 34.8 1.4 70 14-98 86-155 (531)
147 CHL00051 rps12 ribosomal prote 22.0 62 0.0014 26.5 1.8 23 106-128 61-83 (123)
148 PF01593 Amino_oxidase: Flavin 21.6 1.2E+02 0.0026 29.3 4.2 33 338-372 418-450 (450)
149 TIGR02730 carot_isom carotene 21.6 1.2E+02 0.0025 31.1 4.2 35 335-373 456-490 (493)
150 TIGR01372 soxA sarcosine oxida 20.6 2.4E+02 0.0053 31.8 6.8 56 36-102 365-420 (985)
151 PRK12835 3-ketosteroid-delta-1 20.4 2.4E+02 0.0052 29.7 6.3 53 323-375 507-570 (584)
152 TIGR01316 gltA glutamate synth 20.2 3.3E+02 0.0071 27.5 7.1 54 36-98 323-392 (449)
No 1
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=8.1e-59 Score=464.65 Aligned_cols=321 Identities=40% Similarity=0.577 Sum_probs=242.9
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc--------CCCcce
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITV 108 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG--------~~gi~~ 108 (382)
+.+..++.|+||++|+. +++|.||++....|++++++ ++||||||||||+||||||+|| ++|||+
T Consensus 269 L~~~~~~~vtrvl~D~~---~~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpv 341 (623)
T KOG1238|consen 269 LHISRNAAVTRVLIDPA---GKRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPV 341 (623)
T ss_pred ccccccceEEEEEEcCC---CceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCe
Confidence 46788999999999964 88999999987447888887 5899999999999999999999 899999
Q ss_pred eecCCCCCCCCCCCCCCeeEeecCCCccchhhhhhcccchhhHHHhccCcccccCCCCCCcccccccccccc-ccCCC--
Q 016822 109 VLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQL-SKVPP-- 185 (382)
Q Consensus 109 ~~~~p~VG~nL~DH~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 185 (382)
+.|+|+||+||+||+...+....+.+......+..+......|+..++|+ +.... ....++++...... ..+|+
T Consensus 342 v~dLP~VG~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~-~~~~~--~e~~~f~~t~~~~~~~~~PD~~ 418 (623)
T KOG1238|consen 342 VLDLPGVGQNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGP-LASPG--VETLGFINTVSSNLSLDWPDIE 418 (623)
T ss_pred eccCcccccccccccccceeeecCCCccccccccccchHHHHHHHcCCCC-cccCc--ceeeEEeccccccCcCCCCCee
Confidence 99999999999999998877766655544333444555567788877776 32221 01223332211100 00110
Q ss_pred ---------CCCCHHHHH---HHHHh-hccCCCCCCcceeEEEeecccccccEEEecCCCCCCCCeeeeCCCCChhhHHH
Q 016822 186 ---------KQRTPEAIA---EAIEN-MKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQR 252 (382)
Q Consensus 186 ---------~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~P~s~G~V~L~~~d~~~~P~i~~~y~~~~~D~~~ 252 (382)
......+.. .+++. +... .....+.++..+++|.|||+|.|.++||.+.|.|++||+.+|+|++.
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~ 496 (623)
T KOG1238|consen 419 LHFVAGSLSSDGLTALRKALGEIYQALFGEL--TNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVAT 496 (623)
T ss_pred EEeccccccccchhhhhhhcchHHHHhhhhh--hcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHH
Confidence 000000000 01100 0000 11123456778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCccccccccccc--chhhhhhcccCCCCcCCCCCCCChHHHHHHHhccccccCCCcccccCC-----
Q 016822 253 CVQGISTIEKIIESKSFSKFKYESM--SVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----- 325 (382)
Q Consensus 253 ~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~P~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTcrMG----- 325 (382)
++++++.+.++.++.+++.+..+.. +.++|... ...+|++|+||+|+...+.||++|||+||
T Consensus 497 ~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~-----------~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~ 565 (623)
T KOG1238|consen 497 LVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLL-----------AFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDP 565 (623)
T ss_pred HHHHHHHHHHHHcCHHHHHhcchhccccCCCcccc-----------cCCCHHHHHHHHHhccceeeccCCceEeCCccCC
Confidence 9999999999999999988876542 33344221 24689999999999999999999999999
Q ss_pred -cccCCCCeEeeeCCeEEeecccCCCCCCCChHHHHHHHHHHHHHHHHHhhhhccC
Q 016822 326 -KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASND 380 (382)
Q Consensus 326 -sVVD~~~rV~gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~~i~~~~~~~~~ 380 (382)
+|||+++|||||+||||+|||+||.+|++||++|+||||||+|+.|.+++...++
T Consensus 566 ~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~ 621 (623)
T KOG1238|consen 566 TAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKD 621 (623)
T ss_pred CcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9999999999999999999999999999999999999999999866655555444
No 2
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=4.6e-58 Score=473.07 Aligned_cols=342 Identities=59% Similarity=0.963 Sum_probs=236.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc--------CCCcc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNIT 107 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG--------~~gi~ 107 (382)
+++|+++++|+||++++. +..+||+||+|.+.+|+.+++..+.+++||||||||+|+||||||+|| ++|||
T Consensus 234 nl~Vl~~a~V~rIl~~~~-~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIp 312 (587)
T PLN02785 234 KLRVLLHATVQKIVFDTS-GKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIP 312 (587)
T ss_pred CeEEEeCCEEEEEEEcCC-CCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCC
Confidence 478999999999999842 122599999999877775554211124699999999999999999999 89999
Q ss_pred eeecCCCCCCCCCCCCCCeeEeecCCCccchhhhhhcccchhhHHHhccCcccccCC-CCCCccccccccccccccCCCC
Q 016822 108 VVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS-PSPRDYGMFSPKIGQLSKVPPK 186 (382)
Q Consensus 108 ~~~~~p~VG~nL~DH~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 186 (382)
++.|+|+||+||+|||...+.+..+.+......+.++....+.|.....|+ .... .+....+.+....+.+...++.
T Consensus 313 vv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (587)
T PLN02785 313 VVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQTVGITKMGVYIEASSGF--GQSPDSIHCHHGIMSAEIGQLSTIPPK 390 (587)
T ss_pred eeecCCCcccchhhCcccceEEEeCCCchhhhHhhhhhhccccceeccccc--ccCchhhhhhccccccccccccccCcc
Confidence 999999999999999999888877654322111111111111221111111 0000 0000111111111112222222
Q ss_pred CCCHHHHHHHHHhhccCCCCCCcceeEEEeecccccccEEEecCCCCCCCCeeeeCCCCChhhHHHHHHHHHHHHHHHcC
Q 016822 187 QRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIES 266 (382)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~G~V~L~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~ 266 (382)
...++....+.......+...+...++...+++|.|||+|+|.++||++.|.|++||+.+|.|++.++++++.+++++++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~ 470 (587)
T PLN02785 391 QRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKT 470 (587)
T ss_pred cccchhhhhhccCcccccccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcC
Confidence 22333322222111111111122234556788999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccc-chhhhhhcccCCCCcCCCCCCCChHHHHHHHhccccccCCCcccccCCcccCCCCeEeeeCCeEEeec
Q 016822 267 KSFSKFKYESM-SVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDG 345 (382)
Q Consensus 267 ~~~~~~~~~~~-~~~~~~~~~~~~P~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTcrMGsVVD~~~rV~gv~NL~VvDa 345 (382)
..+..+...+. +.+++.......|.++.|....+|+++++|+++...+.||++|||+||+|||+++|||||+||||||+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDa 550 (587)
T PLN02785 471 NHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDG 550 (587)
T ss_pred hhhhhhccccccccccccccccccccccCCCCCCCHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeec
Confidence 88776642221 11111111011122234444567889999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHHHHhhhhccC
Q 016822 346 STFYYSPGTNPQATVMMLGRYMGVRILSERLASND 380 (382)
Q Consensus 346 SvfP~~~~~Np~~Ti~alA~r~A~~i~~~~~~~~~ 380 (382)
|+||.+|++||++|+||+|||+|++|+++++..+.
T Consensus 551 Si~P~~p~~np~atv~miaer~A~~Il~~~~~~~~ 585 (587)
T PLN02785 551 STFDESPGTNPQATVMMMGRYMGVKILRERLGRAA 585 (587)
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999887654
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=7.5e-54 Score=443.08 Aligned_cols=322 Identities=22% Similarity=0.300 Sum_probs=226.3
Q ss_pred hhhhccccceeeeeeeccc---CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcC
Q 016822 17 YLIKMAKDTQLLICWSMLI---PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 17 ~~~~~~~~t~~~~~~~~~~---p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
.+...+|.+....+....+ +++|+++|+|+||+++ +++|+||+|.+.++ .+++. ++|+||||||+|+
T Consensus 193 ~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~-----~~~a~GV~~~~~~~-~~~~~----~ak~VILaaGai~ 262 (560)
T PRK02106 193 TVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE-----GKRAVGVEYERGGG-RETAR----ARREVILSAGAIN 262 (560)
T ss_pred ecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe-----CCeEEEEEEEeCCc-EEEEE----eeeeEEEccCCCC
Confidence 3345555555544333222 4889999999999997 57999999987544 33443 4799999999999
Q ss_pred ChHHHHhhc--------CCCcceeecCCCCCCCCCCCCCCeeEeecCCCccch-hhhhhcc-cchhhHHHhccCcccccC
Q 016822 94 SPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS-LIQVVGI-TQFGSYIEAASGENFAGG 163 (382)
Q Consensus 94 TP~LLl~SG--------~~gi~~~~~~p~VG~nL~DH~~~~v~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~G~~~~~~ 163 (382)
||+|||+|| ++||+++.++|+||+|||||+.+.+.+.++.+.... ....+.. .....|.....|+ +...
T Consensus 263 TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~ 341 (560)
T PRK02106 263 SPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQPVSLYPALKWWNKPKIGAEWLFTGTGL-GASN 341 (560)
T ss_pred CHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCCCcccccccchhhhhHHHHHHHhcCCCC-cccc
Confidence 999999999 789999999999999999999998888876543210 0001100 0112333333343 2110
Q ss_pred CCCCCccccccccccccccCCCCCCCHHHHHHHHHh-hccCC--CCCCcceeEEEeecccccccEEEecCCCCCCCCeee
Q 016822 164 SPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIEN-MKALD--DPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVT 240 (382)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~P~s~G~V~L~~~d~~~~P~i~ 240 (382)
. ....++.... .. ...|++...+... +.... ........+...+++|.|+|+|+|+++|+++.|.|+
T Consensus 342 ~--~~~~~~~~~~-~~-------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~ 411 (560)
T PRK02106 342 H--FEAGGFIRSR-AG-------VDWPNIQYHFLPVAIRYDGSNAVKGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSIL 411 (560)
T ss_pred c--cceeeEEecC-CC-------CCCCCeEEEEeeccccccCCCCCCCCeEEEEEEecCCcceEEEEEeCCCCccCceEc
Confidence 0 0000111000 00 0001100000000 00000 000112233445789999999999999999999999
Q ss_pred eCCCCChhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhcccCCCCcCCCC-CCCChHHHHHHHhccccccCCCc
Q 016822 241 FNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFCRDTVMTIWHYH 319 (382)
Q Consensus 241 ~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~p~-~~~~d~~~~~~~~~~~~~~~H~~ 319 (382)
++|+.+++|++.+++++++++++++++++..+...+ ..|. ...+++++++|+++...+++|++
T Consensus 412 ~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------~~p~~~~~~~~~~~~~i~~~~~~~~H~~ 475 (560)
T PRK02106 412 FNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE----------------ISPGADVQTDEEIDAFVREHAETAYHPS 475 (560)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc----------------cCCCcccCCHHHHHHHHHhccCcCcccC
Confidence 999999999999999999999999988776653221 1222 34678899999999888999999
Q ss_pred ccccCC----cccCCCCeEeeeCCeEEeecccCCCCCCCChHHHHHHHHHHHHHHHHHhh
Q 016822 320 GGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 375 (382)
Q Consensus 320 GTcrMG----sVVD~~~rV~gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~~i~~~~ 375 (382)
|||||| +|||++|||||++||||+|+|+||+.+++||++|+||+|||+||.|+++.
T Consensus 476 GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 476 CTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred CCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence 999999 79999999999999999999999999999999999999999999888643
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.6e-53 Score=438.36 Aligned_cols=320 Identities=23% Similarity=0.328 Sum_probs=224.4
Q ss_pred hhccccceeeeeeecc--c-CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCCh
Q 016822 19 IKMAKDTQLLICWSML--I-PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 95 (382)
Q Consensus 19 ~~~~~~t~~~~~~~~~--~-p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP 95 (382)
...+|.+....+.... . .++|+++|+|+||+++ ++||+||+|.+. |...++. ++|+||||||+|+||
T Consensus 188 ~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-----~~ra~GV~~~~~-~~~~~~~----~ak~VIlaAGai~SP 257 (532)
T TIGR01810 188 HNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE-----GNRATGVEFKKG-GRKEHTE----ANKEVILSAGAINSP 257 (532)
T ss_pred CCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec-----CCeEEEEEEEeC-CcEEEEE----EeeeEEEccCCCCCH
Confidence 3455655544333322 2 4889999999999997 579999999863 4444444 479999999999999
Q ss_pred HHHHhhc--------CCCcceeecCCCCCCCCCCCCCCeeEeecCCCccc-hhhhhhc-ccchhhHHHhccCcccccCCC
Q 016822 96 QLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEV-SLIQVVG-ITQFGSYIEAASGENFAGGSP 165 (382)
Q Consensus 96 ~LLl~SG--------~~gi~~~~~~p~VG~nL~DH~~~~v~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~G~~~~~~~~ 165 (382)
+|||+|| ++||+++.++|+||+|||||+.+.+.+.++.+... .....+. ......|.....|. +....
T Consensus 258 ~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~- 335 (532)
T TIGR01810 258 QLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYPSLNWLKQPFIGAQWLFGRKGA-GASNH- 335 (532)
T ss_pred HHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCcccccccchhhhhHHHHHHHhcCCCC-ccccc-
Confidence 9999999 79999999999999999999999888887654321 0000000 00111233323332 11100
Q ss_pred CCCccccccccccccccCCCCCCCHHHHHHHHH---hhccCCCCCCcceeEEEeecccccccEEEecCCCCCCCCeeeeC
Q 016822 166 SPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIE---NMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFN 242 (382)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~P~s~G~V~L~~~d~~~~P~i~~~ 242 (382)
....++.... .....|++...+.. ...........+..+...++.|.|||+|+|+++||++.|.|+++
T Consensus 336 -~~~~~~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~ 406 (532)
T TIGR01810 336 -FEGGGFVRSN--------DDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFN 406 (532)
T ss_pred -cceeEEEecC--------CCCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEeecCCCCceEEEecCCCCccCceeccc
Confidence 0000111100 00001111000000 00000000011223445678899999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhcccCCCCcCCCCCCCChHHHHHHHhccccccCCCcccc
Q 016822 243 YFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGC 322 (382)
Q Consensus 243 y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc 322 (382)
|+.+++|++.++++++.++++++++++..+...+. .|+ ....+|+++++|+++...+.+|++|||
T Consensus 407 y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~p~----~~~~~d~~~~~~ir~~~~~~~H~~GTc 471 (532)
T TIGR01810 407 YMSHEEDWREFREAIRVTREILKQKALDPYRGGEI-----------SPG----PEVQTDEEIDEFVRRHGETALHPCGTC 471 (532)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc-----------CCC----CCCCCHHHHHHHHhhhcccccccccce
Confidence 99999999999999999999999877766532211 121 235689999999999999999999999
Q ss_pred cCC------cccCCCCeEeeeCCeEEeecccCCCCCCCChHHHHHHHHHHHHHHHHHh
Q 016822 323 QVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 374 (382)
Q Consensus 323 rMG------sVVD~~~rV~gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~~i~~~ 374 (382)
||| +|||++||||||+||||+|+|+||+.+++||++|+||+|||+||.|+++
T Consensus 472 rMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~ 529 (532)
T TIGR01810 472 KMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGK 529 (532)
T ss_pred eCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 999 5999999999999999999999999999999999999999999988753
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-45 Score=376.84 Aligned_cols=300 Identities=26% Similarity=0.341 Sum_probs=219.7
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeCCCc-eEEEEeecCCCceEEEeCCCcCChHHHHhhc--------CCCcc
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNIT 107 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~-~~~v~~~~~a~~eVILaaGai~TP~LLl~SG--------~~gi~ 107 (382)
++|+|+++|+||+++ ++|++||+|...++. ...+. ++++||||||+|+||+|||+|| .+|++
T Consensus 218 l~v~t~a~v~ri~~~-----~~r~~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~ 288 (542)
T COG2303 218 LTLLTGARVRRILLE-----GDRAVGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGID 288 (542)
T ss_pred eEEecCCEEEEEEEE-----CCeeEEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCe
Confidence 789999999999998 789999999864432 23333 5799999999999999999999 68999
Q ss_pred eeecCCCCCCCCCCCCCCeeEeecCCCccchhhhhhcccch--hhHHHhccCcccccCCCCCCccccccccccccccCCC
Q 016822 108 VVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF--GSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPP 185 (382)
Q Consensus 108 ~~~~~p~VG~nL~DH~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (382)
++.++|+||+|||||....+.+..+................ ..|...++|. .... ....+ |....+
T Consensus 289 ~v~~~~~vg~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~---~~~~g--------f~~~~~ 356 (542)
T COG2303 289 VVGRLPGVGQNLQDHLEIYVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGP-GATN---HFEGG--------FVRSGP 356 (542)
T ss_pred eeecCcchhHHHHhhhhhhhheeccCccccccccccccccccceeEEeecCCC-cccc---ccccc--------ccccCc
Confidence 99999999999999999888877765441111111111000 1122223332 1100 00011 222222
Q ss_pred CCCCHHHHHHHHHh-hccCCCCCCcceeEEEeecccccccEEEecCCCCCCCCeeeeCCCCChhhHHHHHHHHHHHHHHH
Q 016822 186 KQRTPEAIAEAIEN-MKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKII 264 (382)
Q Consensus 186 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~s~G~V~L~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~ 264 (382)
....|+.+..+... .........+.+.+.....+|.|+|.|.+++.|+...|.|+++|.+++.|++.+.++++..++++
T Consensus 357 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~ 436 (542)
T COG2303 357 AGEYPDGQYHFAPLPLAIRAAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREII 436 (542)
T ss_pred cccCCCcccccccccccccccccCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHh
Confidence 22233332222110 00000112334556677899999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccccchhhhhhcccCCCCcCCCC-CCCChHHHHHHHhccccccCCCcccccCC-----cccCCCCeEeeeC
Q 016822 265 ESKSFSKFKYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVD 338 (382)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~p~-~~~~d~~~~~~~~~~~~~~~H~~GTcrMG-----sVVD~~~rV~gv~ 338 (382)
.+..+..+...+ ..|. ...+++++..|++....+.+|++|||||| +|+|++|||||++
T Consensus 437 ~~~~~~~~~~~e----------------~~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~ 500 (542)
T COG2303 437 GQPALDARRKAE----------------LAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLE 500 (542)
T ss_pred cCccchhhHHHh----------------hcCCCccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCC
Confidence 876665544322 2232 46678899999999999999999999999 4555999999999
Q ss_pred CeEEeecccCCCCCCCChHHHHHHHHHHHHHHHHH
Q 016822 339 ALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 339 NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~~i~~ 373 (382)
||||+|+|+||+.+++||++|++|||+|+|++|++
T Consensus 501 nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~ 535 (542)
T COG2303 501 NLRVVDASVMPTSTGVNPNLTIIALAERAADHILG 535 (542)
T ss_pred CeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999886
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=2.5e-39 Score=328.63 Aligned_cols=292 Identities=16% Similarity=0.159 Sum_probs=187.3
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHHhhcCC--Cc--ceeec
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAH--NI--TVVLD 111 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG~~--gi--~~~~~ 111 (382)
++|+++|+|+||++++. ++++|+||+|+|. +|+.++++ +|.||||||+||||||||+|+.. +. ++.++
T Consensus 229 ~~l~~~a~v~~i~~d~~--~~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~~~~~~~p~gl~Ns 301 (544)
T TIGR02462 229 FTLLTNHRCTRLVRNET--NESEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSGFGQLGRPDPTNPP 301 (544)
T ss_pred EEEEcCCEEEEEEeCCC--CCceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCCCCCCcCCCCcCCC
Confidence 78999999999999852 2268999999986 58878887 48999999999999999999921 22 23444
Q ss_pred --CCCCCCCCCCCCCCeeEeecCCCccchhhhhhcccchhhHHHhcc-Cc--ccccCCCCCCccc-cccccccccc-cCC
Q 016822 112 --QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAAS-GE--NFAGGSPSPRDYG-MFSPKIGQLS-KVP 184 (382)
Q Consensus 112 --~p~VG~nL~DH~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~--~~~~~~~~~~~~~-~~~~~~~~~~-~~~ 184 (382)
+++||||||||+...+.+.++++....+..... ...|..... .. .+.... ....+. ........+. ..+
T Consensus 302 s~~g~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~ 377 (544)
T TIGR02462 302 PLLPSLGRYITEQSMTFCQIVLSTELVDSVRSDPR---GLDWWKEKVANHMMKHPEDP-LPIPFRDPEPQVTTPFTEEHP 377 (544)
T ss_pred CCCCCCCcchhcCCCccEEEEecchhhhhccCCcc---ccccccccchhhhccccCCc-ccccccccCcccccccccccc
Confidence 489999999999988777666542111111000 001111000 00 000000 000000 0000000000 000
Q ss_pred CCCCCHHHHHHHH--Hhh-ccCCCCCCcceeEEEeecccccccEEEecC--CCCCCCCeeeeCCCCChhhHHHHHHHHHH
Q 016822 185 PKQRTPEAIAEAI--ENM-KALDDPAFRGGFILEKVMGPVSTGHLELRT--RNPNDNPSVTFNYFKEPEDLQRCVQGIST 259 (382)
Q Consensus 185 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~P~s~G~V~L~~--~d~~~~P~i~~~y~~~~~D~~~~~~~~~~ 259 (382)
|.. ....... ... ...... ....+-......|...++|+|++ +|.+|+|+++++|..+++|++.+.++++.
T Consensus 378 --w~~-~~~~~~~~~g~~~~~~~~~-~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~ 453 (544)
T TIGR02462 378 --WHT-QIHRDAFSYGAVGPSIDSR-VIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTD 453 (544)
T ss_pred --cch-hhhhhhhhccccccccccc-ceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHH
Confidence 100 0111111 000 000000 00111122234477788999985 69999999999999999999999999999
Q ss_pred HHHHHcCcccccccccccchhhhhhcccCCCCcCCCCCCCChHHHHHHHhccccccCCCcccccCC-----cccCCCCeE
Q 016822 260 IEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKV 334 (382)
Q Consensus 260 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTcrMG-----sVVD~~~rV 334 (382)
+.++++..+...... .+ .|. ....++|++|||||| ||||++|||
T Consensus 454 ~~~i~~~~G~~~~~~-------------------~~----------~~~--~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv 502 (544)
T TIGR02462 454 MCNVAAKIGGYLPGS-------------------LP----------QFM--EPGLALHLAGTTRIGFDEQTTVANTDSKV 502 (544)
T ss_pred HHHHHHHcCCCcccc-------------------cc----------ccc--CCCccccCCCCeecCCCCCCceECCCCcE
Confidence 999988765321110 00 000 112478999999999 899999999
Q ss_pred eeeCCeEEeecccCCCCCCCChHHHHHHHHHHHHHHHHHh
Q 016822 335 LGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 374 (382)
Q Consensus 335 ~gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~~i~~~ 374 (382)
||++||||+|+|+||+.+++|||+|+||+|+|+|++|+++
T Consensus 503 ~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~ 542 (544)
T TIGR02462 503 HNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN 542 (544)
T ss_pred eCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998865
No 7
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=6e-35 Score=249.58 Aligned_cols=136 Identities=35% Similarity=0.601 Sum_probs=109.9
Q ss_pred cccccEEEecCCCCCCCCeeeeCCCCChhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhcccCCCCc--C-CCC
Q 016822 220 PVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVN--L-LPR 296 (382)
Q Consensus 220 P~s~G~V~L~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~~--~-~p~ 296 (382)
|+|+|+|+|+++|+++.|.|+++|+.+++|++.++++++.+++++++. ++.+...+.. |+. . ...
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~-----------~~~~~~~~~~ 68 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELL-----------PGPSPFCPDA 68 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEE-----------SCGCSCCGCS
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccccccc-----------cccccccccc
Confidence 789999999999999999999999999999999999999999999987 5555322110 110 0 011
Q ss_pred CCCChHHHHHHHhccccccCCCcccccCC-----cccCCCCeEeeeCCeEEeecccCCCCCCCChHHHHHHHHHHH
Q 016822 297 HSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 367 (382)
Q Consensus 297 ~~~~d~~~~~~~~~~~~~~~H~~GTcrMG-----sVVD~~~rV~gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~ 367 (382)
...+++++++|+++...+.+|++|||||| +|||++|||||++||||+|+|+||+.+++||++|+||||+|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 69 SLDSDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp TTTCHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred ccccchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 35678899999999989999999999999 999999999999999999999999999999999999999995
No 8
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.77 E-value=4.5e-20 Score=176.17 Aligned_cols=101 Identities=32% Similarity=0.473 Sum_probs=78.2
Q ss_pred chhhhhccccceeeeeeeccc---CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCc-eEEEEeecCCCceEEEeCC
Q 016822 15 GQYLIKMAKDTQLLICWSMLI---PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGA-KHRAYLKNGPKNEIIVSAG 90 (382)
Q Consensus 15 ~~~~~~~~~~t~~~~~~~~~~---p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~-~~~v~~~~~a~~eVILaaG 90 (382)
+..+-..+|.+....+....+ ++.|+++|+|+||+++. ++++|+||+|.+.++. .+++. ++|+||||||
T Consensus 183 ~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~---~~~~a~gV~~~~~~~~~~~~~~----~ak~VIlaAG 255 (296)
T PF00732_consen 183 GFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDG---DGGRATGVEYVDNDGGVQRRIV----AAKEVILAAG 255 (296)
T ss_dssp EECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEET---TSTEEEEEEEEETTTSEEEEEE----EEEEEEE-SH
T ss_pred cccccchhceehhhcccchhhccCCccEEcCcEEEEEeeec---cccceeeeeeeecCCcceeeec----cceeEEeccC
Confidence 334777788876654333222 58899999999999974 4789999999997766 33333 3699999999
Q ss_pred CcCChHHHHhhc--------CCCcceeecCCCCCCCCCCCC
Q 016822 91 ALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNP 123 (382)
Q Consensus 91 ai~TP~LLl~SG--------~~gi~~~~~~p~VG~nL~DH~ 123 (382)
||+||+|||+|| ++||++++++| |||||||||
T Consensus 256 ai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~ 295 (296)
T PF00732_consen 256 AIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP 295 (296)
T ss_dssp HHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred CCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence 999999999999 68999999999 999999997
No 9
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.34 E-value=0.028 Score=59.06 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=44.3
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC-hHHHHh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLML 100 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T-P~LLl~ 100 (382)
.+.+++++.|++|+.|+ +++++||.+.. +|..++++ +++.||||+|.++. |.++..
T Consensus 227 gv~i~~~~~~~~Li~d~----~g~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 227 GVPLWLDSPMTELITDP----DGAVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred CceEEeCCEEEEEEECC----CCcEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHHHH
Confidence 47789999999999873 57999999964 67767776 45689999999885 665543
No 10
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.61 E-value=0.076 Score=55.45 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=42.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 100 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~ 100 (382)
.+++++++.|++|+.+ +++++||.+.. +|+.++++ +++.||||+|.++.-+-|+.
T Consensus 222 gv~v~~~t~v~~l~~~-----~g~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 222 GVPVLLNTPLTDLYVE-----DGRVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred CCEEEeCCEEEEEEEe-----CCEEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHH
Confidence 4778999999999876 56999999875 56667776 35689999999987544443
No 11
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.50 E-value=0.074 Score=55.56 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=42.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC-hHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T-P~LLl 99 (382)
.+++++++.|++|+.+ +++++||.+.. +|+.++++ +++.||||+|.++. +.++.
T Consensus 222 gv~i~~~~~v~~Li~~-----~g~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 222 GVPLWTNTPLTELIVE-----DGRVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred CCEEEeCCEEEEEEEe-----CCEEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHHH
Confidence 5778999999999986 57999999975 57666776 45789999998876 44443
No 12
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=94.40 E-value=0.092 Score=54.25 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=43.2
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcC-ChHHHHh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG-SPQLLML 100 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~-TP~LLl~ 100 (382)
.+.+++++.|++|+.+ +++++||.+.. +|..++++ ++|.||||+|.++ ++.++..
T Consensus 188 gv~i~~~t~~~~Li~~-----~g~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~~~ 243 (513)
T PRK12837 188 NARLRLNTPLVELVVE-----DGRVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMRAR 243 (513)
T ss_pred CCEEEeCCEEEEEEec-----CCEEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHHHH
Confidence 4678999999999876 57999999865 57767777 4579999999996 5555543
No 13
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=94.13 E-value=0.12 Score=52.51 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=44.3
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 101 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~S 101 (382)
.+.++.++.|++|+.+ +++++||.+.+.+|+...++ ++.||||+|.+...+.|+.+
T Consensus 145 gv~i~~~t~v~~l~~~-----~g~v~gv~~~~~~g~~~~i~-----a~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 145 GVEIRYDAPVTALELD-----DGRFVGARAGSAAGGAERIR-----AKAVVLAAGGFESNREWLRE 200 (466)
T ss_pred CCEEEcCCEEEEEEec-----CCeEEEEEEEccCCceEEEE-----CCEEEECCCCCCCCHHHHHh
Confidence 4668899999999875 57899999864456656666 48999999999888776664
No 14
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.10 E-value=0.076 Score=53.03 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=40.5
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCChHHHHh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 100 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~ 100 (382)
.+.++.+++|++|+.+ +++++||.+.+ .+|+.+++++ +.||||+|.++. .++..
T Consensus 155 gv~i~~~~~~~~Li~e-----~g~V~Gv~~~~~~~g~~~~i~A-----~aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 155 GVDIRFNTRVTDLITE-----DGRVTGVVAENPADGEFVRIKA-----KAVILATGGFGG-ELLRQ 209 (417)
T ss_dssp TEEEEESEEEEEEEEE-----TTEEEEEEEEETTTCEEEEEEE-----SEEEE----BGG-HHHHH
T ss_pred CeeeeccceeeeEEEe-----CCceeEEEEEECCCCeEEEEee-----eEEEeccCcccc-ccccc
Confidence 5678999999999997 56999999984 3677778873 699999999999 55544
No 15
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=94.02 E-value=0.065 Score=51.17 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=43.4
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCCh--HHHHhhc
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP--QLLMLSG 102 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP--~LLl~SG 102 (382)
+.++.+++|.+|+ + +.++++||+|.|.+|+...+. ...||+|.|.+.-. .||..=+
T Consensus 160 ~ki~~nskvv~il-~----n~gkVsgVeymd~sgek~~~~-----~~~VVlatGGf~ysd~~lLKey~ 217 (477)
T KOG2404|consen 160 VKILLNSKVVDIL-R----NNGKVSGVEYMDASGEKSKII-----GDAVVLATGGFGYSDKELLKEYG 217 (477)
T ss_pred Hhhhhcceeeeee-c----CCCeEEEEEEEcCCCCcccee-----cCceEEecCCcCcChHHHHHHhC
Confidence 3468999999998 3 378999999999888876664 58999999998852 4444433
No 16
>PRK12839 hypothetical protein; Provisional
Probab=93.71 E-value=0.17 Score=53.05 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=41.7
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC-hHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLL 98 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T-P~LL 98 (382)
.+.+++++.|++|+.+ ++++++||.+.+.+|. .++. ++|.||||+|.+.. +.++
T Consensus 228 Gv~i~~~t~v~~Li~~----~~g~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 228 GVDLRVSTSATSLTTD----KNGRVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred CCEEEcCCEEEEEEEC----CCCcEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHH
Confidence 4678999999999876 2579999999775564 4454 46899999999986 4443
No 17
>PRK07121 hypothetical protein; Validated
Probab=93.28 E-value=0.21 Score=51.31 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=43.0
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcC-ChHHHHh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG-SPQLLML 100 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~-TP~LLl~ 100 (382)
.+++++++.|++|+.++ +++++||.+.+ +|..++++ ++|.||||+|.+. +|.++..
T Consensus 191 gv~i~~~~~v~~l~~~~----~g~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~~ 247 (492)
T PRK07121 191 GVQIRYDTRATRLIVDD----DGRVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVAR 247 (492)
T ss_pred CCEEEeCCEEEEEEECC----CCCEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHHH
Confidence 56789999999998862 47899999965 56666676 3589999999876 4555544
No 18
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.02 E-value=0.25 Score=51.73 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=41.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC-hHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T-P~LLl 99 (382)
.+.+++++.|++|+.+ +++++||.+.. +|...+++ ++|-||||+|.++. +.++.
T Consensus 231 Gv~i~~~t~v~~Li~~-----~g~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 231 GIPIWTETSLVRLTDD-----GGRVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred CCEEEecCEeeEEEec-----CCEEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHHH
Confidence 5678999999999864 47999998865 56666666 56899999999985 44443
No 19
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=92.32 E-value=0.27 Score=49.53 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=41.2
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC-hHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T-P~LLl 99 (382)
.+.++.++.|++|+.++ +++++||++.+.+|..+.+. ++.||||+|.+.. |.++.
T Consensus 144 gv~i~~~~~v~~l~~~~----~g~v~Gv~~~~~~g~~~~~~-----a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 144 GIDTRLNSKVEDLIQDD----QGTVVGVVVKGKGKGIYIKA-----AKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred CCEEEeCCEeeEeEECC----CCcEEEEEEEeCCCeEEEEe-----cceEEEecCCCCCCHHHHH
Confidence 46789999999999862 57899999986555544444 5999999998765 44443
No 20
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=92.16 E-value=0.36 Score=50.68 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=40.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 98 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LL 98 (382)
.+.+++++.|++|+.+ +++++||.+.+. +...+++ +++.||||+|++..-.-+
T Consensus 231 Gv~i~~~t~v~~l~~~-----~g~v~GV~~~~~-~~~~~i~----a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 231 GVRIWESAPARELLRE-----DGRVAGAVVETP-GGLQEIR----ARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred CCEEEcCCEEEEEEEe-----CCEEEEEEEEEC-CcEEEEE----eCCEEEEcCCCcccCHHH
Confidence 5678999999999876 579999999763 4445666 358999999999764443
No 21
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=91.42 E-value=0.36 Score=50.64 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=41.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC-hHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T-P~LLl 99 (382)
.+.+++++.|++|+.+ +++++||.+.. +|+.+++. +++.||||+|.++. +.++.
T Consensus 235 Gv~i~~~t~v~~Li~~-----~g~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 235 GVRILTQTDVESLETD-----HGRVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred CCEEEeCCEEEEEEee-----CCEEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHHH
Confidence 4678999999999875 57999999864 56666666 46899999998876 44443
No 22
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.32 E-value=0.41 Score=50.19 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=40.7
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.+++++.+ ++++++||...+ .+|..+.++ +|.||||+|.+..
T Consensus 140 gi~i~~~~~~~~Li~~----~~g~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 190 (570)
T PRK05675 140 GTTFLNEWYAVDLVKN----QDGAVVGVIAICIETGETVYIK-----SKATVLATGGAGR 190 (570)
T ss_pred CCEEEECcEEEEEEEc----CCCeEEEEEEEEcCCCcEEEEe-----cCeEEECCCCccc
Confidence 4678999999999986 258999999875 467766676 4899999999874
No 23
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.31 E-value=0.41 Score=49.81 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=40.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.+++++.|++++.+ ++++++||...+ .+|..+.++ +|.||||+|.++.
T Consensus 148 gv~i~~~t~v~~Li~~----~~~~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 198 (543)
T PRK06263 148 RIKILEEVMAIKLIVD----ENREVIGAIFLDLRNGEIFPIY-----AKATILATGGAGQ 198 (543)
T ss_pred CCEEEeCeEeeeeEEe----CCcEEEEEEEEECCCCcEEEEE-----cCcEEECCCCCCC
Confidence 4678999999999887 356799999876 567666676 4899999999874
No 24
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=91.27 E-value=0.43 Score=50.40 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=39.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++|+.+ ++++++||.+.+. +|....++ +|.||||+|.+..
T Consensus 147 gV~i~~~t~v~~Li~d----d~grV~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~ 197 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVV----DGNRARGIIARNLVTGEIETHS-----ADAVILATGGYGN 197 (603)
T ss_pred CcEEEeCcEEEEEEEc----CCCEEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcC
Confidence 4788999999999986 2579999999864 46655665 5899999999864
No 25
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=90.78 E-value=0.57 Score=48.76 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=40.5
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
.+.+++++.|++|.++.+ ++.++|+||++.. +|...++. +.+++.|||+.|.+.
T Consensus 240 GV~f~~~t~VtdL~~~~d-~~~~~VtgI~~~~-~~~~~~I~--l~~~DlVivTnGs~t 293 (576)
T PRK13977 240 GVDFQYGTKVTDIDFDIT-GGKKTATAIHLTR-NGKEETID--LTEDDLVFVTNGSIT 293 (576)
T ss_pred CCEEEeCCEEEEEEEcCC-CCceEEEEEEEEe-CCceeEEE--ecCCCEEEEeCCcCc
Confidence 567899999999998622 2348999999975 34444443 247899999999774
No 26
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.73 E-value=0.5 Score=50.22 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=39.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++|+.+ +++++||.+.+. +|..+.+. +|.||||+|.+..
T Consensus 184 gV~i~~~t~v~~Li~d-----~g~V~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~ 233 (640)
T PRK07573 184 TVKMYTRTEMLDLVVV-----DGRARGIVARNLVTGEIERHT-----ADAVVLATGGYGN 233 (640)
T ss_pred CCEEEeceEEEEEEEe-----CCEEEEEEEEECCCCcEEEEE-----CCEEEECCCCccc
Confidence 4778999999999876 479999999864 56655665 5899999999875
No 27
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=90.68 E-value=0.52 Score=49.37 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=39.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++++.+ +++++||...+ .+|....++ +|.||||+|.+..
T Consensus 133 gi~i~~~~~~~~Li~~-----~g~v~Ga~~~~~~~g~~~~i~-----AkaVILATGG~~~ 182 (565)
T TIGR01816 133 DTSFFNEYFALDLLME-----DGECRGVIAYCLETGEIHRFR-----AKAVVLATGGYGR 182 (565)
T ss_pred CCEEEeccEEEEEEee-----CCEEEEEEEEEcCCCcEEEEE-----eCeEEECCCCccc
Confidence 4678999999999976 57999999865 357766676 4899999999875
No 28
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=90.13 E-value=0.79 Score=47.80 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=39.2
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEe--CC------------CceEEEEeecCCCceEEEeCCCcC-ChHHHHh
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRD--AT------------GAKHRAYLKNGPKNEIIVSAGALG-SPQLLML 100 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~--~~------------G~~~~v~~~~~a~~eVILaaGai~-TP~LLl~ 100 (382)
+.+++++.+++++.+ +++++||...+ .+ +...+++ +|-||||+|.++ ++.++..
T Consensus 167 v~i~~~t~~~~Li~~-----~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~-----AkaVILATGGf~~n~em~~~ 235 (549)
T PRK12834 167 VRFRFRHRVDELVVT-----DGAVTGVRGTVLEPSDAERGEASSREVVGEFELR-----AQAVIVTSGGIGGNHELVRR 235 (549)
T ss_pred ceEEecCEeeEEEEe-----CCEEEEEEEEecccccccccccccccccceEEEe-----cCEEEEeCCCcccCHHHHHH
Confidence 788999999999876 57999999742 11 1234554 488999999888 5555543
No 29
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.12 E-value=0.56 Score=49.44 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=40.1
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.+++++.|++|+.+ ++++++||.+.+ .+|..+.+. +|.||||+|.++.
T Consensus 163 gi~i~~~~~v~~Li~~----~~g~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 213 (598)
T PRK09078 163 NAEFFIEYFALDLIMD----DGGVCRGVVAWNLDDGTLHRFR-----AHMVVLATGGYGR 213 (598)
T ss_pred CCEEEEeEEEEEEEEc----CCCEEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcc
Confidence 4678999999999886 247999999865 357666676 4899999999875
No 30
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.85 E-value=0.66 Score=48.57 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=38.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
.+.++.++.+++++.+ +++++||...+. +|..+.++ +|.||||+|.++
T Consensus 150 gv~i~~~~~~~~Li~~-----~g~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~ 198 (566)
T PRK06452 150 NVDFYNEWFSLDLVTD-----NKKVVGIVAMQMKTLTPFFFK-----TKAVVLATGGMG 198 (566)
T ss_pred CCEEEeCcEEEEEEEE-----CCEEEEEEEEECCCCeEEEEE-----eCeEEECCCccc
Confidence 4678899999999986 579999999874 45555565 489999999987
No 31
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=89.31 E-value=0.97 Score=46.63 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=41.1
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC-hHHHHh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLML 100 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T-P~LLl~ 100 (382)
.+.+++++.|++|+.+ +++++||.+...+|...+++ ++.||||+|.+.. +.++..
T Consensus 204 gv~i~~~t~v~~l~~~-----~g~V~Gv~~~~~~g~~~~i~-----a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 204 KIPLFVNADVTKITEK-----DGKVTGVKVKINGKETKTIS-----SKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred CCeEEeCCeeEEEEec-----CCEEEEEEEEeCCCeEEEEe-----cCeEEEeCCCcccCHHHHHH
Confidence 4678899999999754 57899999876455555665 4899999997765 455544
No 32
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.25 E-value=0.8 Score=48.22 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=40.1
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.+++++.|++++.+ ++++++||...+ .+|..+.++ +|.||||+|.+..
T Consensus 157 gi~i~~~~~~~~Li~~----~~g~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 207 (588)
T PRK08958 157 HTTIFSEWYALDLVKN----QDGAVVGCTAICIETGEVVYFK-----ARATVLATGGAGR 207 (588)
T ss_pred CCEEEeCcEEEEEEEC----CCCEEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence 4678999999999886 257999999865 357766776 4899999999874
No 33
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=89.21 E-value=0.77 Score=48.61 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=39.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++++.++ +++++||.+.+ .+|..+.++ +|.||||+|.+..
T Consensus 180 gv~i~~~~~~~~Li~~~----~g~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 230 (617)
T PTZ00139 180 DCNFFIEYFALDLIMDE----DGECRGVIAMSMEDGSIHRFR-----AHYTVIATGGYGR 230 (617)
T ss_pred CCEEEeceEEEEEEECC----CCEEEEEEEEECCCCeEEEEE-----CCcEEEeCCCCcc
Confidence 46789999999998842 57999999865 357666665 5899999999874
No 34
>PRK08071 L-aspartate oxidase; Provisional
Probab=88.51 E-value=0.89 Score=46.98 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=39.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++|+.+ ++++.||...+.+|+.+.++ ++.||||+|.+..
T Consensus 143 gV~i~~~~~v~~Li~~-----~g~v~Gv~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 191 (510)
T PRK08071 143 HVTVVEQEMVIDLIIE-----NGRCIGVLTKDSEGKLKRYY-----ADYVVLASGGCGG 191 (510)
T ss_pred CCEEEECeEhhheeec-----CCEEEEEEEEECCCcEEEEE-----cCeEEEecCCCcc
Confidence 3678899999999865 57999999877566655665 5899999999875
No 35
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=88.49 E-value=0.86 Score=51.90 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=42.0
Q ss_pred CceeccCCccceEEeeccC-CCC---CeEEEEEEEeC---CCceEEEEeecCCCceEEEeCCCcCCh
Q 016822 36 PVASLCSCMPPCIRFCSEL-KAR---PVAHGVVFRDA---TGAKHRAYLKNGPKNEIIVSAGALGSP 95 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~-~~~---~rAtGV~~~~~---~G~~~~v~~~~~a~~eVILaaGai~TP 95 (382)
.+.+++++.|++++.++.. .++ ++++||.+.+. +|+.+.++ +|.||||+|.++.-
T Consensus 561 gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~-----AkaVILATGGf~~N 622 (1167)
T PTZ00306 561 RVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLL-----ADAVILATGGFSND 622 (1167)
T ss_pred CcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEE-----eceEEEecCCcccC
Confidence 4678999999999987320 012 48999999875 67766776 48999999999863
No 36
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=88.44 E-value=1.1 Score=46.94 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=39.1
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 96 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~ 96 (382)
.+++++++.|++|+.+ +++++||.+.+.++ ...++ +++.||||+|.+..-.
T Consensus 228 Gv~i~~~~~v~~l~~~-----~g~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n~ 278 (574)
T PRK12842 228 GIPILTGTPARELLTE-----GGRVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHDL 278 (574)
T ss_pred CCEEEeCCEEEEEEee-----CCEEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccchH
Confidence 4678999999999876 57999999976433 34555 3578999999987433
No 37
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=88.34 E-value=0.85 Score=48.67 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=40.0
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++|+.+ +++++||.+.+ .+|..+.+. +|.||||+|.+.-
T Consensus 172 gv~i~~~~~~~~Li~~-----~g~v~Gv~~~~~~~G~~~~i~-----AkaVVLATGG~g~ 221 (657)
T PRK08626 172 GVPVHDRKEAIALIHD-----GKRCYGAVVRCLITGELRAYV-----AKATLIATGGYGR 221 (657)
T ss_pred CCEEEeeEEEEEEEEE-----CCEEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccC
Confidence 4678999999999976 57999999986 467766676 4899999998874
No 38
>PRK06175 L-aspartate oxidase; Provisional
Probab=88.19 E-value=0.99 Score=45.60 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=37.3
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.+++++.|.+|+.+ +++++||...+ +|..++++ ++.||||+|.+..
T Consensus 143 gV~i~~~t~v~~Li~~-----~~~v~Gv~~~~-~g~~~~i~-----Ak~VILAtGG~~~ 190 (433)
T PRK06175 143 NITIIENCYLVDIIEN-----DNTCIGAICLK-DNKQINIY-----SKVTILATGGIGG 190 (433)
T ss_pred CCEEEECcEeeeeEec-----CCEEEEEEEEE-CCcEEEEE-----cCeEEEccCcccc
Confidence 4678999999999865 46899988765 45545665 4899999999764
No 39
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=87.94 E-value=1 Score=47.94 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=40.2
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.+.+++.+ ++++++||...+. +|..+.++ +|.||||+|.+..
T Consensus 201 gv~i~~~~~~~~Li~~----~~g~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 251 (635)
T PLN00128 201 NTQFFVEYFALDLIMD----SDGACQGVIALNMEDGTLHRFR-----AHSTILATGGYGR 251 (635)
T ss_pred CCEEEEeeEEEEEEEc----CCCEEEEEEEEEcCCCeEEEEE-----cCeEEECCCCCcc
Confidence 4678999999998876 2579999998763 57766676 5899999999875
No 40
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=87.54 E-value=1.2 Score=46.66 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=39.1
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++|+.+ +++++||.+.+. +|....++ +|.||||+|.+..
T Consensus 143 gv~i~~~~~v~~L~~~-----~g~v~Gv~~~~~~~g~~~~i~-----Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 143 GVSFFNEYFALDLIHD-----DGRVRGVVAYDLKTGEIVFFR-----AKAVVLATGGYGR 192 (566)
T ss_pred CCEEEeccEEEEEEEe-----CCEEEEEEEEECCCCcEEEEE-----CCeEEECCCcccC
Confidence 4678999999999876 579999998763 56555665 5899999998864
No 41
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.07 E-value=1.2 Score=46.90 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=38.1
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCC
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
+.++.++.+++++.+ ++++++||...+. +|..+.++ +|.||||+|.+..
T Consensus 152 i~i~~~~~~~~Li~~----~~g~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 201 (589)
T PRK08641 152 VTKYEGWEFLGAVLD----DEGVCRGIVAQDLFTMEIESFP-----ADAVIMATGGPGI 201 (589)
T ss_pred cEEEeeEEEEEEEEC----CCCEEEEEEEEECCCCcEEEEE-----CCEEEECCCCCcC
Confidence 557889999999875 2579999999874 35545555 5899999999875
No 42
>PRK08275 putative oxidoreductase; Provisional
Probab=86.51 E-value=1.4 Score=45.95 Aligned_cols=49 Identities=20% Similarity=0.118 Sum_probs=38.2
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
.+.++.++.|++|+.++ +++++||.+.+ .+|....++ +|.||||+|.+.
T Consensus 151 gv~i~~~~~v~~Li~~~----~g~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~ 200 (554)
T PRK08275 151 RVLITNRIMATRLLTDA----DGRVAGALGFDCRTGEFLVIR-----AKAVILCCGAAG 200 (554)
T ss_pred CCEEEcceEEEEEEEcC----CCeEEEEEEEecCCCcEEEEE-----CCEEEECCCCcc
Confidence 46789999999998862 46899999865 356655565 489999999875
No 43
>PRK07395 L-aspartate oxidase; Provisional
Probab=86.40 E-value=1.3 Score=46.32 Aligned_cols=50 Identities=10% Similarity=0.193 Sum_probs=38.7
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.+++++.|++++.++ ++++++||...+ +|..+.++ +|.||||+|.++.
T Consensus 149 gi~i~~~~~v~~Li~~~---~~g~v~Gv~~~~-~g~~~~i~-----AkaVILATGG~~~ 198 (553)
T PRK07395 149 NIEIISQALALSLWLEP---ETGRCQGISLLY-QGQITWLR-----AGAVILATGGGGQ 198 (553)
T ss_pred CcEEEECcChhhheecC---CCCEEEEEEEEE-CCeEEEEE-----cCEEEEcCCCCcc
Confidence 36789999999998762 147999998865 66655565 4899999999753
No 44
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.36 E-value=1.4 Score=46.67 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=38.4
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
+.++.++.|.+|+.+ +++++||...+ .+|..+.++ +|.||||+|.++.
T Consensus 166 v~i~~~~~v~~L~~~-----~g~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKD-----GGRIAGAFGYWRESGRFVLFE-----APAVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEE-----CCEEEEEEEEECCCCeEEEEE-----cCeEEECCCcccC
Confidence 678999999999876 57999998765 356655665 5899999998764
No 45
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=85.90 E-value=2 Score=43.09 Aligned_cols=54 Identities=11% Similarity=-0.027 Sum_probs=39.6
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
+.++.++.|.++.++ ++++++|... ++...+++ ++.||||+|+.-|..|+..-+
T Consensus 278 g~il~g~~V~~i~~~-----~~~v~~V~t~--~g~~~~l~-----AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 278 GVMLPGDRVLRAEFE-----GNRVTRIHTR--NHRDIPLR-----ADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred CEEEECcEEEEEEee-----CCeEEEEEec--CCccceEE-----CCEEEEccCCCcCHHHHhhcC
Confidence 345778899998876 5788887653 34334565 478999999998888877766
No 46
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=85.40 E-value=1.8 Score=45.43 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=38.4
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
+.+++++.|++|+.+ +++++||...+ .+|..+.++ +|.||||.|.+..
T Consensus 149 i~i~~~~~v~~Li~~-----~g~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 197 (582)
T PRK09231 149 IQRFDEHFVLDILVD-----DGHVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGR 197 (582)
T ss_pred cEEEeCeEEEEEEEe-----CCEEEEEEEEEcCCCcEEEEE-----CCEEEECCCCCcC
Confidence 678899999999876 57999999865 356656666 5899999998774
No 47
>PLN02815 L-aspartate oxidase
Probab=85.39 E-value=1.6 Score=46.08 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=39.0
Q ss_pred CceeccCCccceEEeeccCCCCC--eEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARP--VAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~--rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.+++|+.++ +++ +++||.+.+. +|..+.++ +|.||||+|.++-
T Consensus 170 ~i~i~~~~~~~~Li~~~---~g~~~~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 223 (594)
T PLN02815 170 NITFFEHHFAIDLLTSQ---DGGSIVCHGADVLDTRTGEVVRFI-----SKVTLLASGGAGH 223 (594)
T ss_pred CCEEEeceEhheeeeec---CCCccEEEEEEEEEcCCCeEEEEE-----eceEEEcCCccee
Confidence 46789999999999863 233 5999998753 56656665 4899999998863
No 48
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=85.26 E-value=1.1 Score=43.03 Aligned_cols=51 Identities=29% Similarity=0.291 Sum_probs=37.7
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.+.+++++.|++|..+ +++++||+.. +|+ ++ ++.||+|+|+ .|++|+-.++
T Consensus 161 Gv~i~~~~~V~~i~~~-----~~~v~gv~~~--~g~---i~-----ad~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 161 GVEIRTGTEVTSIDVD-----GGRVTGVRTS--DGE---IR-----ADRVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp T-EEEESEEEEEEEEE-----TTEEEEEEET--TEE---EE-----ECEEEE--GG-GHHHHHHTTT
T ss_pred hhhccccccccchhhc-----cccccccccc--ccc---cc-----cceeEecccc-cceeeeeccc
Confidence 4668899999999987 6788888873 442 65 4899999996 6888887765
No 49
>PRK07512 L-aspartate oxidase; Provisional
Probab=84.43 E-value=1.9 Score=44.61 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=36.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++|+.+ +++++||.+.+ ++...+++ ++.||||+|.+..
T Consensus 151 gV~i~~~~~v~~Li~~-----~g~v~Gv~~~~-~~~~~~i~-----Ak~VVLATGG~~~ 198 (513)
T PRK07512 151 SITVLEGAEARRLLVD-----DGAVAGVLAAT-AGGPVVLP-----ARAVVLATGGIGG 198 (513)
T ss_pred CCEEEECcChhheeec-----CCEEEEEEEEe-CCeEEEEE-----CCEEEEcCCCCcC
Confidence 3678899999998765 57999999875 34444565 4899999999863
No 50
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=84.24 E-value=2.1 Score=44.98 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=38.5
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
+.++.++.|++|+.+ +++++||...+ .+|..+.++ +|.||||.|.+.-
T Consensus 148 i~i~~~~~v~~Li~~-----~g~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 196 (580)
T TIGR01176 148 IMRYDEWFVTDLLVD-----DGRVCGLVAIEMAEGRLVTIL-----ADAVVLATGGAGR 196 (580)
T ss_pred CEEEeCeEEEEEEee-----CCEEEEEEEEEcCCCcEEEEe-----cCEEEEcCCCCcc
Confidence 667889999999876 57999999876 357666676 4899999998774
No 51
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=84.23 E-value=2 Score=45.38 Aligned_cols=50 Identities=14% Similarity=0.012 Sum_probs=38.2
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcC
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
+.++.++.|++++.++. ++++++||...+ .+|..+.++ +|.||||+|.+.
T Consensus 141 ~~i~~~~~v~~Ll~d~~--~~GrV~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~ 191 (614)
T TIGR02061 141 GDIFERIFIVKLLLDKN--TPNRIAGAVGFNVRANEVHVFK-----AKTVIVAAGGAV 191 (614)
T ss_pred CeEEcccEEEEEEecCC--CCCeEEEEEEEEeCCCcEEEEE-----CCEEEECCCccc
Confidence 46889999999998621 127999999865 356656666 589999999985
No 52
>PRK09077 L-aspartate oxidase; Provisional
Probab=84.17 E-value=1.9 Score=44.78 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=39.7
Q ss_pred ceeccCCccceEEeeccC-CCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCC
Q 016822 37 VASLCSCMPPCIRFCSEL-KARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~-~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
+.++.++.|.+++.++.. .++++++||.+.+. +|..+.++ ++.||||+|.+..
T Consensus 154 I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 208 (536)
T PRK09077 154 ITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIR-----AKFVVLATGGASK 208 (536)
T ss_pred cEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEe-----cCeEEECCCCCCC
Confidence 778999999999875210 02479999999763 46656665 5899999999874
No 53
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.07 E-value=2 Score=45.21 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=39.0
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++|+.++. +++++++||...+ .+|..+.++ +|.||||+|.+..
T Consensus 154 gv~i~~~~~v~~Li~~~~-~~~g~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 207 (583)
T PRK08205 154 GVEFFNEFYVLDLLLTET-PSGPVAAGVVAYELATGEIHVFH-----AKAVVFATGGSGR 207 (583)
T ss_pred CCEEEeCCEEEEEEecCC-ccCCcEEEEEEEEcCCCeEEEEE-----eCeEEECCCCCcc
Confidence 467899999999987620 0127999999865 356555665 4899999998874
No 54
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.05 E-value=2.2 Score=44.94 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=38.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++++.+ ++++++||.+.+. +|..+.++ +|.||||+|.+..
T Consensus 162 gi~i~~~~~~~~Li~~----~~g~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 212 (591)
T PRK07057 162 KTQFFVEWMALDLIRD----ADGDVLGVTALEMETGDVYILE-----AKTTLFATGGAGR 212 (591)
T ss_pred CCEEEeCcEEEEEEEc----CCCeEEEEEEEEcCCCeEEEEE-----CCeEEECCCCccc
Confidence 4678899999999886 2579999998753 46555565 5899999998874
No 55
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.47 E-value=2.6 Score=44.26 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=38.6
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.+++++.|++|+.+ ++++.||...+ .+|..+.++ +|.||||+|.+..
T Consensus 149 gi~i~~~t~v~~L~~~-----~g~v~Gv~~~~~~~g~~~~i~-----AkaVVlATGG~~~ 198 (575)
T PRK05945 149 GVTIYDEWYVMRLILE-----DNQAKGVVMYHIADGRLEVVR-----AKAVMFATGGYGR 198 (575)
T ss_pred CCEEEeCcEEEEEEEE-----CCEEEEEEEEEcCCCeEEEEE-----CCEEEECCCCCcC
Confidence 4678999999999876 57999998754 356555665 5899999999864
No 56
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.47 E-value=2.7 Score=46.59 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=37.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.+.+++.+.+++.+ +++++||...+ .+|..+.++ +|.||||+|.++.
T Consensus 157 ~i~~~~~~~~~~Li~~-----~g~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 206 (897)
T PRK13800 157 RIRIENRLMPVRVLTE-----GGRAVGAAALNTRTGEFVTVG-----AKAVILATGPCGR 206 (897)
T ss_pred CcEEEeceeeEEEEee-----CCEEEEEEEEecCCCcEEEEE-----CCEEEECCCcccc
Confidence 3566788888888875 57999999866 357766676 5899999998863
No 57
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=82.43 E-value=2.7 Score=44.41 Aligned_cols=47 Identities=13% Similarity=-0.033 Sum_probs=37.2
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcC
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
+.++.++.|.+|+.+ +++++||...+ .+|....++ ++.||||+|.+.
T Consensus 148 V~i~~~~~v~~Li~~-----~g~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~ 195 (608)
T PRK06854 148 DNVLNRVFITDLLVD-----DNRIAGAVGFSVRENKFYVFK-----AKAVIVATGGAA 195 (608)
T ss_pred CEEEeCCEEEEEEEe-----CCEEEEEEEEEccCCcEEEEE-----CCEEEECCCchh
Confidence 788999999999876 46999998754 346555665 589999999876
No 58
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.42 E-value=2.5 Score=44.33 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=37.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
.+.++.++.|.+|+.+ +++++||...+. +|....++ +|.||||+|.+.
T Consensus 152 gv~i~~~~~v~~Li~~-----~g~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~ 200 (577)
T PRK06069 152 NIHFYDEHFVTSLIVE-----NGVFKGVTAIDLKRGEFKVFQ-----AKAGIIATGGAG 200 (577)
T ss_pred CCEEEECCEEEEEEEE-----CCEEEEEEEEEcCCCeEEEEE-----CCcEEEcCchhc
Confidence 3678899999999876 579999998763 56545565 589999999985
No 59
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=82.14 E-value=1.5 Score=44.38 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=46.4
Q ss_pred ccccchhhhhccccceeeeeeecccCceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCC
Q 016822 11 RRLVGQYLIKMAKDTQLLICWSMLIPVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAG 90 (382)
Q Consensus 11 ~~~~~~~~~~~~~~t~~~~~~~~~~p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaG 90 (382)
++.+=++|++-++++..+ .++.++.+.+|+.++ +..+.||.+.+.+++...++ ++.||||+|
T Consensus 132 G~~I~~~L~~~v~~~p~I---------~v~e~~~a~~li~~~----~~~~~Gv~~~~~~~~~~~~~-----a~~vVLATG 193 (518)
T COG0029 132 GKEIMTALLKKVRNRPNI---------TVLEGAEALDLIIED----GIGVAGVLVLNRNGELGTFR-----AKAVVLATG 193 (518)
T ss_pred cHHHHHHHHHHHhcCCCc---------EEEecchhhhhhhcC----CceEeEEEEecCCCeEEEEe-----cCeEEEecC
Confidence 344445666666665555 579999999999882 44566999986544455665 599999999
Q ss_pred CcC
Q 016822 91 ALG 93 (382)
Q Consensus 91 ai~ 93 (382)
.++
T Consensus 194 G~g 196 (518)
T COG0029 194 GLG 196 (518)
T ss_pred CCc
Confidence 875
No 60
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=82.13 E-value=3.7 Score=42.36 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=43.0
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.+.+++++.|+.|..+ +++++||++.+. +|...+++ ++.||.|+|+- +.+|+...|
T Consensus 142 Ga~i~~~t~V~~i~~~-----~~~v~gv~v~~~~~g~~~~i~-----a~~VVnAaG~w-a~~l~~~~g 198 (516)
T TIGR03377 142 GARIFTYTKVTGLIRE-----GGRVTGVKVEDHKTGEEERIE-----AQVVINAAGIW-AGRIAEYAG 198 (516)
T ss_pred CCEEEcCcEEEEEEEE-----CCEEEEEEEEEcCCCcEEEEE-----cCEEEECCCcc-hHHHHHhcC
Confidence 4667899999999875 678999999753 46556676 58999999964 677776655
No 61
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=80.66 E-value=3.2 Score=43.29 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=42.1
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.+.+++++.|+.|..+ +++++||++.+. +|...+++ ++.||+|+|+- +.+|+...|
T Consensus 163 Ga~i~~~t~V~~i~~~-----~~~v~gv~v~d~~~g~~~~i~-----A~~VVnAaG~w-a~~l~~~~g 219 (546)
T PRK11101 163 GAQILTYHEVTGLIRE-----GDTVCGVRVRDHLTGETQEIH-----APVVVNAAGIW-GQHIAEYAD 219 (546)
T ss_pred CCEEEeccEEEEEEEc-----CCeEEEEEEEEcCCCcEEEEE-----CCEEEECCChh-HHHHHHhcC
Confidence 4567889999999875 578999998763 35555676 58999999964 677766555
No 62
>PRK07804 L-aspartate oxidase; Provisional
Probab=79.82 E-value=4 Score=42.54 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=37.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC----CCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA----TGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~----~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
++.++.++.|++|+.+ ++++++||.+.+. ++...+++ +|.||||+|.+..
T Consensus 158 gV~i~~~~~v~~Li~~----~~g~v~Gv~~~~~~~~~~~g~~~i~-----Ak~VIlATGG~~~ 211 (541)
T PRK07804 158 PLDIREHALALDLLTD----GTGAVAGVTLHVLGEGSPDGVGAVH-----APAVVLATGGLGQ 211 (541)
T ss_pred CCEEEECeEeeeeEEc----CCCeEEEEEEEeccCCCCCcEEEEE-----cCeEEECCCCCCC
Confidence 5778999999999876 2479999998631 22234554 5899999999763
No 63
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=79.63 E-value=3.6 Score=42.16 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=37.6
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
.+.++.++.|++|+.+ +++++||...+. +....++ ++.||||+|++..
T Consensus 143 gi~i~~~~~v~~l~~~-----~g~v~Gv~~~~~-~~~~~i~-----A~~VVlAtGG~~~ 190 (488)
T TIGR00551 143 NIRIIEGENALDLLIE-----TGRVVGVWVWNR-ETVETCH-----ADAVVLATGGAGK 190 (488)
T ss_pred CcEEEECeEeeeeecc-----CCEEEEEEEEEC-CcEEEEE-----cCEEEECCCcccC
Confidence 3678899999999875 568999998764 4444555 5899999999875
No 64
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=78.80 E-value=3.8 Score=43.53 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=42.5
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.+.++.++.|.+|..++ ++++++||.+.|. +|..++++ ++.||+|+|+. +.+|+...|
T Consensus 246 Ga~i~~~~~V~~l~~~~---~~g~v~gV~v~d~~tg~~~~i~-----a~~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 246 GAAVLNYAEVVSLIKDE---STGRIVGARVRDNLTGKEFDVY-----AKVVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred CcEEEeccEEEEEEEec---CCCcEEEEEEEECCCCcEEEEE-----eCEEEECCCHh-HHHHHHhcc
Confidence 45678899999988752 1468999999764 45555676 59999999976 566776654
No 65
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=77.93 E-value=1.5 Score=45.23 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=42.5
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
..+++.+.|++++.+ ++ ++||++.|. +|+++.++ ++.||-|+|+- +-+++...+
T Consensus 179 a~il~~~~v~~~~re-----~~-v~gV~~~D~~tg~~~~ir-----a~~VVNAaGpW-~d~i~~~~~ 233 (532)
T COG0578 179 AEILTYTRVESLRRE-----GG-VWGVEVEDRETGETYEIR-----ARAVVNAAGPW-VDEILEMAG 233 (532)
T ss_pred cchhhcceeeeeeec-----CC-EEEEEEEecCCCcEEEEE-----cCEEEECCCcc-HHHHHHhhc
Confidence 447899999999987 55 999999985 48888888 58999999964 456666654
No 66
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=75.27 E-value=2.1 Score=36.56 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=38.1
Q ss_pred eecccccchhhhhccccceeeeeeecccCceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEE
Q 016822 8 CMARRLVGQYLIKMAKDTQLLICWSMLIPVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIV 87 (382)
Q Consensus 8 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVIL 87 (382)
..-|.++|+||....+.-.... +.-+.+..+ ..+|+.|...+ ++ ..+...+|... . .+.|||
T Consensus 90 f~pR~~~G~YL~~~~~~~~~~~--~~~i~v~~~-~~~V~~i~~~~----~~----~~v~~~~g~~~--~-----~d~VvL 151 (156)
T PF13454_consen 90 FPPRALFGEYLRDRFDRLLARL--PAGITVRHV-RAEVVDIRRDD----DG----YRVVTADGQSI--R-----ADAVVL 151 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHhh--cCCcEEEEE-eeEEEEEEEcC----Cc----EEEEECCCCEE--E-----eCEEEE
Confidence 4568899999987766654331 111223333 34777776552 22 23333467543 3 389999
Q ss_pred eCCC
Q 016822 88 SAGA 91 (382)
Q Consensus 88 aaGa 91 (382)
|.|.
T Consensus 152 a~Gh 155 (156)
T PF13454_consen 152 ATGH 155 (156)
T ss_pred CCCC
Confidence 9983
No 67
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=71.77 E-value=9 Score=38.50 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=37.5
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl 99 (382)
.+.+++++.|++|+.++ ++++++||...+ ++ .+++ +|.||||+|.++.-+=|+
T Consensus 137 Gv~i~~~~~v~~l~~~~---~~g~v~gv~~~~-~~--~~i~-----ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 137 GVEIRYGIAVDRIPPEA---FDGAHDGPLTTV-GT--HRIT-----TQALVLAAGGLGANRDWL 189 (432)
T ss_pred CCEEEeCCEEEEEEecC---CCCeEEEEEEcC-Cc--EEEE-----cCEEEEcCCCcccCHHHH
Confidence 46789999999998752 147899998732 22 4555 489999999887644333
No 68
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=68.64 E-value=7.4 Score=39.77 Aligned_cols=52 Identities=13% Similarity=-0.002 Sum_probs=36.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQL 97 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~L 97 (382)
..+|++++.|++|+.+ +++++||...+. +|....+. ++.||+++..-.+.+|
T Consensus 246 G~~i~~~~~V~~I~~~-----~~~~~gv~~~~~~~~~~~~~~-----ad~VI~~~~~~~~~~l 298 (492)
T TIGR02733 246 GGNLLTGQRVTAIHTK-----GGRAGWVVVVDSRKQEDLNVK-----ADDVVANLPPQSLLEL 298 (492)
T ss_pred CCEEeCCceEEEEEEe-----CCeEEEEEEecCCCCceEEEE-----CCEEEECCCHHHHHHh
Confidence 4678999999999987 568899987642 12223454 4889998887555553
No 69
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=66.25 E-value=5.2 Score=40.30 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=36.0
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCCh
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 95 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP 95 (382)
-+|.|.+.|..|++| +++|.||.+. ||+ +++ +|.||--|+-..|=
T Consensus 279 aeI~tka~Vq~Illd-----~gka~GV~L~--dG~--ev~-----sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 279 AEIFTKATVQSILLD-----SGKAVGVRLA--DGT--EVR-----SKIVVSNATPWDTF 323 (561)
T ss_pred ceeeehhhhhheecc-----CCeEEEEEec--CCc--EEE-----eeeeecCCchHHHH
Confidence 457899999999998 5999999996 576 455 37888778766665
No 70
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=66.01 E-value=8 Score=39.01 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=33.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCce-EEEEeecCCCceEEEeCCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAK-HRAYLKNGPKNEIIVSAGA 91 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~-~~v~~~~~a~~eVILaaGa 91 (382)
..+|++++.|++|..+ ++++++||++.+..|++ +++. ++.||++...
T Consensus 227 g~~i~l~~~V~~I~~~----~~~~v~~v~~~~~~~~~~~~~~-----a~~VI~a~p~ 274 (453)
T TIGR02731 227 GGEVRLNSRLKEIVLN----EDGSVKHFVLADGEGQRRFEVT-----ADAYVSAMPV 274 (453)
T ss_pred CCEEeCCCeeEEEEEC----CCCCEEEEEEecCCCCceeEEE-----CCEEEEcCCH
Confidence 5678999999999865 25679999996533332 2454 4889998864
No 71
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=65.96 E-value=11 Score=33.16 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=28.2
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.+.++.++.|++|..++ ++ .-|++ .+| ++++ ++.||||.|....|+.+..-|
T Consensus 96 ~l~i~~~~~V~~v~~~~----~~--w~v~~--~~~--~~~~-----a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDG----DG--WTVTT--RDG--RTIR-----ADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp TGGEETS--EEEEEEET----TT--EEEEE--TTS---EEE-----EEEEEE---SSCSB---S-TT
T ss_pred CcccccCCEEEEEEEec----cE--EEEEE--Eec--ceee-----eeeEEEeeeccCCCCcccccc
Confidence 34478899999998872 23 33444 345 4555 389999999999998876543
No 72
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=65.09 E-value=12 Score=37.64 Aligned_cols=50 Identities=10% Similarity=-0.072 Sum_probs=36.1
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 97 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~L 97 (382)
.+.+++++.|.++..+ ++++++|.. .+|....+. ++.||||+|.+.+.-|
T Consensus 273 Gv~I~~g~~V~~v~~~-----~~~V~~v~~--~~g~~~~i~-----AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 273 GGRIMPGDEVLGAEFE-----GGRVTAVWT--RNHGDIPLR-----ARHFVLATGSFFSGGL 322 (422)
T ss_pred CCEEEeCCEEEEEEEe-----CCEEEEEEe--eCCceEEEE-----CCEEEEeCCCcccCce
Confidence 4567899999999876 456666652 356656666 4899999998766654
No 73
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=63.74 E-value=2.3 Score=42.86 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.++|+.++.|..+..+ +++++||.+.+.+| ..+++ ++.||-|.| ...|+-++|
T Consensus 104 gv~v~~~t~v~~v~~~-----~~~i~~V~~~~~~g-~~~i~-----A~~~IDaTG---~g~l~~~aG 156 (428)
T PF12831_consen 104 GVEVLLGTRVVDVIRD-----GGRITGVIVETKSG-RKEIR-----AKVFIDATG---DGDLAALAG 156 (428)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccccccccccccccc-----cccccccccccccc-ccccc-----ccccccccc---ccccccccc
Confidence 5778999999999987 67899999987666 56776 599999999 468899988
No 74
>PRK06185 hypothetical protein; Provisional
Probab=63.37 E-value=14 Score=36.43 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=34.1
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcC
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
+.++.++.|..+..+ +++++||.+...+|+ .+++ ++.||.|.|+-.
T Consensus 124 v~i~~~~~v~~~~~~-----~~~v~~v~~~~~~g~-~~i~-----a~~vI~AdG~~S 169 (407)
T PRK06185 124 FTLRMGAEVTGLIEE-----GGRVTGVRARTPDGP-GEIR-----ADLVVGADGRHS 169 (407)
T ss_pred cEEEeCCEEEEEEEe-----CCEEEEEEEEcCCCc-EEEE-----eCEEEECCCCch
Confidence 567889999998876 467888888754453 4565 489999999754
No 75
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=62.89 E-value=9.4 Score=39.10 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=37.3
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl 99 (382)
.+.+++++.|++|..+ ++++.||... +|. ++. ++.||+++|.-.+-+.|+
T Consensus 243 G~~i~~~~~V~~I~~~-----~~~~~gv~~~--~g~--~~~-----ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 243 GGQIRYRARVTKIILE-----NGKAVGVKLA--DGE--KIY-----AKRIVSNATRWDTFGKLL 292 (493)
T ss_pred CCEEEeCCeeeEEEec-----CCcEEEEEeC--CCC--EEE-----cCEEEECCChHHHHHHhC
Confidence 4668999999999886 5688999874 464 344 478999999876665444
No 76
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=62.03 E-value=17 Score=33.85 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=34.2
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC----CC---ceEEEEeecCCCceEEEeCCCc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA----TG---AKHRAYLKNGPKNEIIVSAGAL 92 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~----~G---~~~~v~~~~~a~~eVILaaGai 92 (382)
.+.++.++.|+.|..++ +++++||..... +| ...+++ +|.||+|+|.-
T Consensus 118 Gv~I~~~t~V~dl~~~~----~g~V~Gvv~~~~~v~~~g~~~~~~~i~-----Ak~VI~ATG~~ 172 (257)
T PRK04176 118 GAKIFNGVSVEDVILRE----DPRVAGVVINWTPVEMAGLHVDPLTIE-----AKAVVDATGHD 172 (257)
T ss_pred CCEEEcCceeceeeEeC----CCcEEEEEEccccccccCCCCCcEEEE-----cCEEEEEeCCC
Confidence 46678999999998762 458999987531 12 235566 59999999953
No 77
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=61.93 E-value=8.7 Score=38.44 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=32.4
Q ss_pred cccCCCCeEeeeCCeEEe-ecccCCCCCCCChHHHHHHH----HHHHHHHHHHhhhh
Q 016822 326 KVVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMML----GRYMGVRILSERLA 377 (382)
Q Consensus 326 sVVD~~~rV~gv~NL~Vv-DaSvfP~~~~~Np~~Ti~al----A~r~A~~i~~~~~~ 377 (382)
=+||+++++.|.+|+|++ |++.++.. +|..++.-+ |+.+|+.|.++..+
T Consensus 280 l~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 280 LVVNPTLQVPGHPDIFAAGDCAAVIDP---RPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred EEeCCCcccCCCCCeEEEeccccCCCC---CCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 488999999999999987 67777765 433343344 44445444444444
No 78
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=59.87 E-value=11 Score=37.84 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=30.9
Q ss_pred cCCcccCCCCeEeeeCCeEE-eecccCCCCCCCChHHHHHHHHHHHHHHHHH
Q 016822 323 QVGKVVDHDYKVLGVDALRV-IDGSTFYYSPGTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 323 rMGsVVD~~~rV~gv~NL~V-vDaSvfP~~~~~Np~~Ti~alA~r~A~~i~~ 373 (382)
|=|=+||+++||.|++|+|. .|++.+|.. -|| .-+|++-++.+.+
T Consensus 345 rr~L~vDE~LrV~G~~nvfAiGDca~~~~~---~~t---AQVA~QqG~yLAk 390 (491)
T KOG2495|consen 345 RRGLAVDEWLRVKGVKNVFAIGDCADQRGL---KPT---AQVAEQQGAYLAK 390 (491)
T ss_pred ceeeeeeceeeccCcCceEEeccccccccC---ccH---HHHHHHHHHHHHH
Confidence 54568999999999999995 477755543 333 3456666665554
No 79
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=59.35 E-value=15 Score=37.55 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=41.0
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCc
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 92 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai 92 (382)
|....+++|+-|.++.. ++.++|+++++.. +|...++. +.....|++.-|.+
T Consensus 222 V~F~~~t~V~di~~~~~-~~~~~~~~i~~~~-~g~~~~i~--l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 222 VDFRFNTKVTDIDFDIT-GDKKTATRIHIEQ-DGKEETID--LGPDDLVFVTNGSM 273 (500)
T ss_pred CEEECCCEEEEEEEEcc-CCCeeEEEEEEEc-CCCeeEEE--eCCCCEEEEECCcc
Confidence 44678999999999864 3467899999985 67776765 45889999999976
No 80
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=58.65 E-value=13 Score=39.05 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=50.4
Q ss_pred eeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcC-----ChHHHHhhc-------CC
Q 016822 38 ASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG-----SPQLLMLSG-------AH 104 (382)
Q Consensus 38 ~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~-----TP~LLl~SG-------~~ 104 (382)
.+..+..+..++.++ ++++.||...+. +|..+.++ +|.||+|.|+.. |+-....+| ..
T Consensus 155 ~~~~~~~~~~l~~~~----~~~v~Gvv~~~~~~g~~~~~~-----akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~a 225 (562)
T COG1053 155 EIFDEYFVLDLLVDD----GGGVAGVVARDLRTGELYVFR-----AKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRA 225 (562)
T ss_pred hhhhhhhhhhheecC----CCcEEEEEEEEecCCcEEEEe-----cCcEEEccCCceEEEeccCCccccCCcHHHHHHhc
Confidence 467888999998873 455999998874 46666665 489999999988 555555544 45
Q ss_pred CcceeecCCCCCCCCCCCCCC
Q 016822 105 NITVVLDQPLVGQGMSDNPMN 125 (382)
Q Consensus 105 gi~~~~~~p~VG~nL~DH~~~ 125 (382)
|.++ ...+..|-||..
T Consensus 226 Ga~l-----~dme~~Q~hpt~ 241 (562)
T COG1053 226 GAPL-----IDMEFVQFHPTG 241 (562)
T ss_pred CCcc-----cCCCccccccce
Confidence 5542 134566677653
No 81
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=57.82 E-value=44 Score=34.16 Aligned_cols=50 Identities=14% Similarity=0.001 Sum_probs=37.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl 99 (382)
.+++++++.|++|..+ +++++||+.. +|+ ++. ++.||+|++...+-..|+
T Consensus 233 G~~i~~~~~V~~i~~~-----~~~~~~V~~~--~g~--~~~-----ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 233 GGELRLNAEVIRIETE-----GGRATAVHLA--DGE--RLD-----ADAVVSNADLHHTYRRLL 282 (502)
T ss_pred CCEEEECCeEEEEEee-----CCEEEEEEEC--CCC--EEE-----CCEEEECCcHHHHHHHhc
Confidence 4568999999999876 5688888774 454 344 478999998777776654
No 82
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=57.65 E-value=21 Score=35.85 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=32.7
Q ss_pred ccCCCCeEeeeCCeEEe-ecccCCCCCCCChHH-HHHHHHHHHHHHHHHhhhh
Q 016822 327 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQA-TVMMLGRYMGVRILSERLA 377 (382)
Q Consensus 327 VVD~~~rV~gv~NL~Vv-DaSvfP~~~~~Np~~-Ti~alA~r~A~~i~~~~~~ 377 (382)
.||+++|+-+.+|+|++ |++.++..+ ..+++ ..+.-|..+|+.|.+...+
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~-~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERP-LPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCC-CCCchHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999965 677665432 22233 2345567777777665444
No 83
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=57.39 E-value=12 Score=38.35 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=25.9
Q ss_pred eEeeeCCeEEeecccCCCCCCCChHHHHHHHHHHHHHHHHHhh
Q 016822 333 KVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 375 (382)
Q Consensus 333 rV~gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~~i~~~~ 375 (382)
+...++|||.+.+|++|-.+ =|. +++-|..+|+.|+++.
T Consensus 454 ~~t~i~gLyl~G~~~~pG~G--v~g--~~~sg~~~a~~il~~~ 492 (502)
T TIGR02734 454 RDRKIDNLYLVGAGTHPGAG--VPG--VLGSAKATAKLMLGDL 492 (502)
T ss_pred CCCCCCCEEEeCCCCCCCCC--HHH--HHHHHHHHHHHHHhhc
Confidence 34579999999999988321 122 3345666777777643
No 84
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.22 E-value=25 Score=34.48 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=46.1
Q ss_pred cCceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHHhh
Q 016822 35 IPVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 101 (382)
Q Consensus 35 ~p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~S 101 (382)
-++.+++++.-+.|.=| +.+++|.+|+|. +|..+.+.. .-|.+--|-+-+..+|.-|
T Consensus 403 ~Nv~ii~na~Ttei~Gd-----g~kV~Gl~Y~dr~sge~~~l~L-----eGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 403 PNVTIITNAQTTEVKGD-----GDKVTGLEYRDRVSGEEHHLEL-----EGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred CCcEEEecceeeEEecC-----CceecceEEEeccCCceeEEEe-----eeeEEEEecccChhHhhch
Confidence 36889999999988754 789999999986 477788764 5677888888888888765
No 85
>PRK07208 hypothetical protein; Provisional
Probab=55.62 E-value=17 Score=36.82 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=35.3
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 97 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~L 97 (382)
..+|++++.|++|..+ +++.+++|.+.+.+|..+++. ++.||++.-.-...++
T Consensus 232 g~~i~~~~~V~~I~~~----~~~~v~~~~~~~~~g~~~~~~-----ad~VI~a~p~~~l~~~ 284 (479)
T PRK07208 232 GGKVVLNAKVVGLHHD----GDGRIAVVVVNDTDGTEETVT-----ADQVISSMPLRELVAA 284 (479)
T ss_pred CCEEEeCCEEEEEEEc----CCcEEEEEEEEcCCCCEEEEE-----cCEEEECCCHHHHHHh
Confidence 4568999999999887 245566776654456655565 4788887764333333
No 86
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=55.15 E-value=30 Score=35.59 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=35.7
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
+.++.++.|+.|..++ +++. .|...+ .+|...+++ ++.||+|||+ .+.+|+..+|
T Consensus 199 v~i~~~teV~~I~~~~----dg~~-~v~~~~~~~G~~~~i~-----A~~VVvaAGg-~s~~L~~~~G 254 (494)
T PRK05257 199 FELQLGHEVRDIKRND----DGSW-TVTVKDLKTGEKRTVR-----AKFVFIGAGG-GALPLLQKSG 254 (494)
T ss_pred eEEEeCCEEEEEEECC----CCCE-EEEEEEcCCCceEEEE-----cCEEEECCCc-chHHHHHHcC
Confidence 5778899999887642 3332 244332 235433565 4899999997 4677887877
No 87
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=54.51 E-value=12 Score=37.37 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=28.5
Q ss_pred cCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcC
Q 016822 41 CSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 41 t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
....|+.|..+ ++++.||... +|. .+. ++.||||.|++.
T Consensus 114 ~~~~V~~l~~e-----~~~v~GV~~~--~g~--~~~-----a~~vVlaTGtfl 152 (392)
T PF01134_consen 114 IQGEVTDLIVE-----NGKVKGVVTK--DGE--EIE-----ADAVVLATGTFL 152 (392)
T ss_dssp EES-EEEEEEC-----TTEEEEEEET--TSE--EEE-----ECEEEE-TTTGB
T ss_pred EEcccceEEec-----CCeEEEEEeC--CCC--EEe-----cCEEEEeccccc
Confidence 46789999987 6899998874 565 454 489999999943
No 88
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=53.96 E-value=25 Score=34.20 Aligned_cols=52 Identities=8% Similarity=0.020 Sum_probs=32.9
Q ss_pred cccCCCCeEeeeCCeEEee-cccCCCCCCCChHHHHHHHHHHHHHHHHHhhhh
Q 016822 326 KVVDHDYKVLGVDALRVID-GSTFYYSPGTNPQATVMMLGRYMGVRILSERLA 377 (382)
Q Consensus 326 sVVD~~~rV~gv~NL~VvD-aSvfP~~~~~Np~~Ti~alA~r~A~~i~~~~~~ 377 (382)
=.||+++|..+.+|+|+++ ++.++..+........+.-|..+|+.|.+...+
T Consensus 260 i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 260 LRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred EEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 3689999998999999985 555554333222233444566667666654433
No 89
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=53.88 E-value=51 Score=33.84 Aligned_cols=56 Identities=23% Similarity=0.195 Sum_probs=34.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.++++.++.|+.|.-++ ++.. .|...+ .+|...+++ ++.||+|||+ .+.+|+...|
T Consensus 192 Gv~i~~~t~V~~i~~~~----~~~v-~v~~~~~~~g~~~~i~-----A~~VV~AAG~-~s~~La~~~G 248 (483)
T TIGR01320 192 GTTIRFGHEVRNLKRQS----DGSW-TVTVKNTRTGGKRTLN-----TRFVFVGAGG-GALPLLQKSG 248 (483)
T ss_pred CCEEEeCCEEEEEEEcC----CCeE-EEEEeeccCCceEEEE-----CCEEEECCCc-chHHHHHHcC
Confidence 45577888898886541 2222 233322 234434565 5899999997 4677777776
No 90
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=53.76 E-value=30 Score=35.65 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=28.3
Q ss_pred CeEeeeCCeEEeecccCCCCCCCChHHHHHHHHHHHHHHHHH
Q 016822 332 YKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 332 ~rV~gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~~i~~ 373 (382)
--+.|.+=+.-.|+|+| ..+..+=..|....|++=+..|.+
T Consensus 433 ~L~~g~~~i~~~~~~i~-~~~~spgast~l~~~~~d~~~~~~ 473 (497)
T PTZ00383 433 KLLLGEGKIDPGKGIIF-NITPSPGATTCLGNAESDMREICE 473 (497)
T ss_pred eEecCceEEecCCCcEE-eccCCCcHHHHHHHHHHHHHHHHH
Confidence 34667777888899999 554445455677788876665554
No 91
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=52.10 E-value=30 Score=35.30 Aligned_cols=35 Identities=17% Similarity=0.028 Sum_probs=24.0
Q ss_pred eeeCCeEEeecccCCCCCCCChHHHHHHHHHHHHHHHHH
Q 016822 335 LGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 335 ~gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~~i~~ 373 (382)
-.++|||.+.+|++|-. +=| .+++-|..+|+.|++
T Consensus 456 t~i~gLyl~G~~~~pG~--Gv~--g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 456 TPVKGLWLCGDSIHPGE--GTA--GVSYSALMVVRQILA 490 (492)
T ss_pred CCCCCeEEecCccCCCC--cHH--HHHHHHHHHHHHHhh
Confidence 47999999999999932 212 244556677776664
No 92
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=51.24 E-value=24 Score=36.12 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=37.7
Q ss_pred CceeccCCccceEEeeccCCCCC-eEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARP-VAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 98 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~-rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LL 98 (382)
..+|++++.|++|..+... ++. +++||++.+.+|. ..+. ++.||+|..+-...+||
T Consensus 233 Gg~i~~~~~V~~I~~~~~~-~~~~~v~~v~~~~g~~~-~~~~-----aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 233 GGKFHLRHKVREIKYEKSS-DGSTRVTGLIMSKPEGK-KVIK-----ADAYVAACDVPGIKRLL 289 (474)
T ss_pred CCEEECCCEEEEEEEecCC-CCceeEEEEEEecCCcc-eEEE-----CCEEEECCChHHHHhhC
Confidence 5678999999999986310 122 4899988532221 2354 48899998877777665
No 93
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=50.92 E-value=33 Score=35.34 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=35.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl 99 (382)
.+.++.++.|+.|..+ ++ ..+|.+.+. +|...+++ ++.||+|+|+- +.+++-
T Consensus 169 Ga~i~~~~~V~~i~~~-----~~-~~~v~~~~~~~g~~~~i~-----a~~VVnAaG~w-a~~l~~ 221 (508)
T PRK12266 169 GAEILTRTRVVSARRE-----NG-LWHVTLEDTATGKRYTVR-----ARALVNAAGPW-VKQFLD 221 (508)
T ss_pred CCEEEcCcEEEEEEEe-----CC-EEEEEEEEcCCCCEEEEE-----cCEEEECCCcc-HHHHHh
Confidence 4557788999988754 33 357777652 46556776 59999999964 556654
No 94
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=49.73 E-value=15 Score=35.81 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=30.0
Q ss_pred eccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHH
Q 016822 39 SLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 97 (382)
Q Consensus 39 v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~L 97 (382)
+..+..|+.|..++. .+....-|+..+.+|....+. +|.|||+.| .+|.+
T Consensus 112 v~~~~~V~~I~~~~~--~~~~~~~V~~~~~~g~~~~~~-----ar~vVla~G--~~P~i 161 (341)
T PF13434_consen 112 VRYGSEVTSIEPDDD--GDEDLFRVTTRDSDGDGETYR-----ARNVVLATG--GQPRI 161 (341)
T ss_dssp EEESEEEEEEEEEEE--TTEEEEEEEEEETTS-EEEEE-----ESEEEE------EE--
T ss_pred eEECCEEEEEEEecC--CCccEEEEEEeecCCCeeEEE-----eCeEEECcC--CCCCC
Confidence 567889999998853 112455566666667767776 489999999 66654
No 95
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.09 E-value=32 Score=35.41 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=36.2
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl 99 (382)
.+.++.++.|..|..+ ++ ..+|...+..|++++++ ++.||.|+|+- +.+|+-
T Consensus 169 Ga~i~~~~~V~~i~~~-----~~-~~~v~~~~~~g~~~~i~-----a~~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 169 GATILTRTRCVSARRE-----GG-LWRVETRDADGETRTVR-----ARALVNAAGPW-VTDVIH 220 (502)
T ss_pred CCEEecCcEEEEEEEc-----CC-EEEEEEEeCCCCEEEEE-----ecEEEECCCcc-HHHHHh
Confidence 4557788888888764 33 35677766446666776 49999999964 556654
No 96
>PLN02487 zeta-carotene desaturase
Probab=47.80 E-value=28 Score=36.61 Aligned_cols=57 Identities=11% Similarity=0.013 Sum_probs=36.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 98 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LL 98 (382)
..+|++++.|++|.++.+.++..+++||++.. ++....+. ++.||++++.-...+||
T Consensus 309 Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~~-----aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 309 GGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIVK-----ADAYVAACDVPGIKRLL 365 (569)
T ss_pred CCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEEE-----CCEEEECCCHHHHHHhC
Confidence 45688999999999974211123699999852 33333454 48899988865444443
No 97
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=47.57 E-value=15 Score=36.43 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=35.7
Q ss_pred ccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChH
Q 016822 40 LCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 96 (382)
Q Consensus 40 ~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~ 96 (382)
+.+..|..++-| .+.+.||.|.+..|++.+.. +..-|+|-|-+.+=|
T Consensus 165 ~eeGtV~sLlee-----~gvvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 165 LEEGTVKSLLEE-----EGVVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSNLR 211 (509)
T ss_pred EeeeeHHHHHhc-----cCeEEeEEEecCCCceEEEe-----cceEEEecchhHHHH
Confidence 456677777654 56999999988777776665 589999999886543
No 98
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.73 E-value=25 Score=36.04 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=33.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 100 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~ 100 (382)
.++|.+++.|++|+.+ +++ |+.+++.+| ..+. ++.||..+.. ..++.|..
T Consensus 238 Gg~I~~~~~V~~I~v~-----~g~--g~~~~~~~g--~~~~-----ad~vv~~~~~-~~~~~l~~ 287 (487)
T COG1233 238 GGEIRTGAEVSQILVE-----GGK--GVGVRTSDG--ENIE-----ADAVVSNADP-ALLARLLG 287 (487)
T ss_pred CCEEECCCceEEEEEe-----CCc--ceEEecccc--ceec-----cceeEecCch-hhhhhhhh
Confidence 4678999999999998 455 666665456 3454 4777777776 44444443
No 99
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=43.60 E-value=33 Score=32.54 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=29.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 92 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai 92 (382)
.+.++.++.|+.|..+ ++++++|.. .+| +++ ++.||+|+|+-
T Consensus 151 g~~~~~~~~v~~i~~~-----~~~~~~v~~--~~g---~~~-----a~~vV~a~G~~ 192 (337)
T TIGR02352 151 GVEIIEHTEVQHIEIR-----GEKVTAIVT--PSG---DVQ-----ADQVVLAAGAW 192 (337)
T ss_pred CCEEEccceEEEEEee-----CCEEEEEEc--CCC---EEE-----CCEEEEcCChh
Confidence 4557788899988764 567777764 234 355 48999999963
No 100
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=43.25 E-value=93 Score=31.46 Aligned_cols=52 Identities=19% Similarity=0.113 Sum_probs=36.7
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.+.+..++.|+.|.... +| |.+.. .+|+++ ++ +|-||.|||. .+-+|+.++|
T Consensus 167 g~~i~ln~eV~~i~~~~----dg----~~~~~~~~g~~~-~~-----ak~Vin~AGl-~Ad~la~~~g 219 (429)
T COG0579 167 GVELRLNTEVTGIEKQS----DG----VFVLNTSNGEET-LE-----AKFVINAAGL-YADPLAQMAG 219 (429)
T ss_pred CCEEEecCeeeEEEEeC----Cc----eEEEEecCCcEE-EE-----eeEEEECCch-hHHHHHHHhC
Confidence 45678899999998762 33 33332 356654 65 4899999994 5678888888
No 101
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=40.62 E-value=69 Score=33.03 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=42.3
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHHhh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 101 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~S 101 (382)
.+.+++++.|.+|.-+ ++++++|++.+. +|...++. ...|++|.|..-++.+|..+
T Consensus 401 gI~i~~~~~v~~i~~~-----~g~v~~v~~~~~~~g~~~~i~-----~D~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 401 NVTIITNAQTTEVTGD-----GDKVTGLTYKDRTTGEEHHLE-----LEGVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CcEEEECcEEEEEEcC-----CCcEEEEEEEECCCCcEEEEE-----cCEEEEeECCccCchHHhhh
Confidence 4678888999888633 578999999763 45555665 48999999998888877543
No 102
>PLN02661 Putative thiazole synthesis
Probab=40.58 E-value=51 Score=32.46 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=33.6
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEe----CC--C----ceEEEEeecCCCceEEEeCCCcC
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRD----AT--G----AKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~----~~--G----~~~~v~~~~~a~~eVILaaGai~ 93 (382)
+.++.++.|+.++.+ ++++.||.+.. .+ + ....++ +|.||+|+|.-+
T Consensus 188 VkI~~~t~V~DLI~~-----~grVaGVVvnw~~v~~~~~~~s~~dp~~I~-----AkaVVlATGh~g 244 (357)
T PLN02661 188 VKLFNAVAAEDLIVK-----GDRVGGVVTNWALVAQNHDTQSCMDPNVME-----AKVVVSSCGHDG 244 (357)
T ss_pred CEEEeCeEeeeEEec-----CCEEEEEEeecchhhhccCCCCccceeEEE-----CCEEEEcCCCCC
Confidence 678889999999886 57899999631 11 1 123455 599999999543
No 103
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.27 E-value=45 Score=35.15 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=38.2
Q ss_pred ccCCcc-cCCCCeEe--------eeCCeEEeecccC--CC---CCCCChHHHHHHHHHHHHHHHHHh
Q 016822 322 CQVGKV-VDHDYKVL--------GVDALRVIDGSTF--YY---SPGTNPQATVMMLGRYMGVRILSE 374 (382)
Q Consensus 322 crMGsV-VD~~~rV~--------gv~NL~VvDaSvf--P~---~~~~Np~~Ti~alA~r~A~~i~~~ 374 (382)
..||+| +|.++|+. .++|||.+.--.- +. -.++|..+-.+..+.++++.+.+.
T Consensus 359 ~t~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 359 YQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred eeCCCeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 346765 79999996 3899999887432 11 124578888888899988887653
No 104
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=39.56 E-value=1.1e+02 Score=31.17 Aligned_cols=77 Identities=23% Similarity=0.232 Sum_probs=48.5
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHHhhcCCCcceeecCCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVVLDQPL 114 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG~~gi~~~~~~p~ 114 (382)
.+.+..+..|+.|.-.. ++ -.-|.+.+. +|...+++ ++-|+|+||+- +=.||+.|| ||
T Consensus 196 ~~~~~~~~eV~~i~r~~----dg-~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG~-aL~LLqksg---i~------- 254 (488)
T PF06039_consen 196 GFELHLNHEVTDIKRNG----DG-RWEVKVKDLKTGEKREVR-----AKFVFVGAGGG-ALPLLQKSG---IP------- 254 (488)
T ss_pred CcEEEecCEeCeeEECC----CC-CEEEEEEecCCCCeEEEE-----CCEEEECCchH-hHHHHHHcC---Ch-------
Confidence 35678899999997652 22 344555542 46667787 59999999975 446788887 32
Q ss_pred CCCCCCCCCCCeeEeecCC
Q 016822 115 VGQGMSDNPMNAIFVPSPV 133 (382)
Q Consensus 115 VG~nL~DH~~~~v~~~~~~ 133 (382)
=|+++--=|....|+..+.
T Consensus 255 e~~gyggfPVsG~fl~~~n 273 (488)
T PF06039_consen 255 EGKGYGGFPVSGQFLRCKN 273 (488)
T ss_pred hhcccCCCcccceEEecCC
Confidence 2444444455455555543
No 105
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=39.47 E-value=56 Score=32.24 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=33.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.+.++.++.|+.|..+ +++++++|+.. +| +++ ++.||+|||+- ++.++...|
T Consensus 197 Gv~~~~~~~V~~i~~~----~~~~~~~v~t~--~g---~i~-----a~~vVvaagg~-~~~l~~~~g 248 (407)
T TIGR01373 197 GVDIIQNCEVTGFIRR----DGGRVIGVETT--RG---FIG-----AKKVGVAVAGH-SSVVAAMAG 248 (407)
T ss_pred CCEEEeCCEEEEEEEc----CCCcEEEEEeC--Cc---eEE-----CCEEEECCChh-hHHHHHHcC
Confidence 4667888999998654 24566676652 45 355 47899999985 455655443
No 106
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=39.10 E-value=64 Score=31.84 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=31.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl 99 (382)
.+.+++++.|++|..+ ++++++|+. .+| +++ ++.||+|+|+- +..|+.
T Consensus 215 G~~i~~~~~V~~i~~~-----~~~~~~v~t--~~~---~~~-----a~~VV~a~G~~-~~~l~~ 262 (416)
T PRK00711 215 GVKFRFNTPVDGLLVE-----GGRITGVQT--GGG---VIT-----ADAYVVALGSY-STALLK 262 (416)
T ss_pred CCEEEcCCEEEEEEec-----CCEEEEEEe--CCc---EEe-----CCEEEECCCcc-hHHHHH
Confidence 4567788899988764 455666653 233 354 48999999974 445543
No 107
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=38.68 E-value=55 Score=32.87 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=28.2
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 96 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~ 96 (382)
.+++++++.|..|..+ ++.+.+|.. .++. .+. ++.||||+|...-|+
T Consensus 123 gv~i~~~~~V~~i~~~-----~~~~f~v~~--~~~~--~~~-----a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 123 GVEIHFNTRVKSIEKK-----EDGVFGVKT--KNGG--EYE-----ADAVILATGGKSYPK 169 (409)
T ss_dssp T-EEE-S--EEEEEEE-----TTEEEEEEE--TTTE--EEE-----ESEEEE----SSSGG
T ss_pred CCEEEeCCEeeeeeec-----CCceeEeec--cCcc--ccc-----CCEEEEecCCCCccc
Confidence 5778999999999887 456667776 2333 454 489999999998886
No 108
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=38.29 E-value=21 Score=36.90 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=39.7
Q ss_pred eccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHH
Q 016822 39 SLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 99 (382)
Q Consensus 39 v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl 99 (382)
++-+..|.+++-+ +++++.|++++|. .|++++++ +|.||=|+|.+.-.-..|
T Consensus 241 v~Nh~ev~~Llkd----~~~kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 241 VLNHVEVVSLLKD----KDGKVIGARARDHITGKEYEIR-----AKVVVNATGPFSDSIRKM 293 (680)
T ss_pred hhhHHHHHHHhhC----CCCceeeeEEEEeecCcEEEEE-----EEEEEeCCCCccHHHHhh
Confidence 3456677788776 3679999999985 59999998 499999999886553333
No 109
>PLN02985 squalene monooxygenase
Probab=38.06 E-value=54 Score=33.94 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=31.7
Q ss_pred ccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHH
Q 016822 44 MPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 99 (382)
Q Consensus 44 ~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl 99 (382)
.|..+..+ +++++||++.+.+|++.+++ ++.||.|.|.-..-|=.+
T Consensus 169 tvv~li~~-----~~~v~gV~~~~~dG~~~~~~-----AdLVVgADG~~S~vR~~l 214 (514)
T PLN02985 169 TVKSLIEE-----KGVIKGVTYKNSAGEETTAL-----APLTVVCDGCYSNLRRSL 214 (514)
T ss_pred eEEEEEEc-----CCEEEEEEEEcCCCCEEEEE-----CCEEEECCCCchHHHHHh
Confidence 45555443 46788999976667766665 589999999766554443
No 110
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=37.52 E-value=98 Score=28.60 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=37.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHHhh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 101 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~S 101 (382)
.+.+++++.+.+|.-+ +++.+|++.+. +|+..++. .+.||+|.|...++.+|..+
T Consensus 191 gv~~~~~~~v~~i~~~------~~~~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGD------NKVEGVKIKNTVTGEEEELK-----VDGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CeEEEeccEEEEEEcc------CcEEEEEEEecCCCceEEEE-----ccEEEEeeCCCCChHHHHHh
Confidence 5567778888887532 36778887652 35555665 48999999977766666554
No 111
>COG4895 Uncharacterized conserved protein [Function unknown]
Probab=35.12 E-value=27 Score=24.29 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.7
Q ss_pred hHHHHhhc--CCCcceeecCCCCCCC
Q 016822 95 PQLLMLSG--AHNITVVLDQPLVGQG 118 (382)
Q Consensus 95 P~LLl~SG--~~gi~~~~~~p~VG~n 118 (382)
.+||-+|. ++||.+....++|||-
T Consensus 34 k~iLT~S~~HPHGIKVrL~dGqvGRv 59 (63)
T COG4895 34 KAILTRSPSHPHGIKVRLTDGQVGRV 59 (63)
T ss_pred HHHHhCCCCCCCceEEEeecCcccce
Confidence 47899998 8999998888999973
No 112
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=34.84 E-value=31 Score=35.26 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=35.0
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 97 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~L 97 (382)
++.|+.+ .|..|++.+.++...+++||... +|. .+. ++-|||..|++-+.+|
T Consensus 139 nL~ire~-~V~dliv~~~~~~~~~~~gV~l~--dgt--~v~-----a~~VilTTGTFL~~~I 190 (679)
T KOG2311|consen 139 NLEIREG-AVADLIVEDPDDGHCVVSGVVLV--DGT--VVY-----AESVILTTGTFLRGQI 190 (679)
T ss_pred cchhhhh-hhhheeeccCCCCceEEEEEEEe--cCc--Eec-----cceEEEeeccceeeEE
Confidence 3455555 45556666554455789999986 465 354 4899999998866654
No 113
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=33.02 E-value=75 Score=30.76 Aligned_cols=46 Identities=28% Similarity=0.262 Sum_probs=28.6
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 98 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LL 98 (382)
.+.++.++.|++|..+ ++ ++.+...+| +++ ++.||+|+|+. +.+|+
T Consensus 163 gv~i~~~~~v~~i~~~-----~~---~~~v~~~~g---~~~-----a~~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 163 GAELLFNEPVTAIEAD-----GD---GVTVTTADG---TYE-----AKKLVVSAGAW-VKDLL 208 (376)
T ss_pred CCEEECCCEEEEEEee-----CC---eEEEEeCCC---EEE-----eeEEEEecCcc-hhhhc
Confidence 3456778888888764 22 244444445 355 48999999975 44443
No 114
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=32.08 E-value=1.3e+02 Score=31.15 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=39.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC-CCceEEEEeecCCCceEEEeCCCcCChHHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 99 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~-~G~~~~v~~~~~a~~eVILaaGai~TP~LLl 99 (382)
.+.+++++.|++|.-+ +++.++|++.+. +|...++. ...||+|.|..-+..+|-
T Consensus 402 gV~i~~~~~v~~i~~~-----~~~v~~v~~~~~~~~~~~~i~-----~D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 402 NVDILTSAQTTEIVGD-----GDKVTGIRYQDRNSGEEKQLD-----LDGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCEEEECCeeEEEEcC-----CCEEEEEEEEECCCCcEEEEE-----cCEEEEEeCCcCCchHHh
Confidence 4667888888888532 468889998753 35545565 489999999887777764
No 115
>PRK07121 hypothetical protein; Validated
Probab=31.87 E-value=74 Score=32.52 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=40.9
Q ss_pred ccccCCc-ccCCC-CeEee-----eCCeEEeec---ccCCC-CCCCChHHHHHHHHHHHHHHHHHh
Q 016822 320 GGCQVGK-VVDHD-YKVLG-----VDALRVIDG---STFYY-SPGTNPQATVMMLGRYMGVRILSE 374 (382)
Q Consensus 320 GTcrMGs-VVD~~-~rV~g-----v~NL~VvDa---SvfP~-~~~~Np~~Ti~alA~r~A~~i~~~ 374 (382)
-.+.||+ ++|.+ +||.+ ++|||.+.. +++-. -.++|.....+..+..+++++.++
T Consensus 425 ~~~T~GGl~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 425 PGFTLGGLRVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred ceeeccCeeECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 3355664 67999 99998 999999983 45532 235788888888899888877653
No 116
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=31.77 E-value=69 Score=24.01 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=27.6
Q ss_pred eeCCeEEeecccCCCCCCCChHHHHHHHHHHHH
Q 016822 336 GVDALRVIDGSTFYYSPGTNPQATVMMLGRYMG 368 (382)
Q Consensus 336 gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A 368 (382)
.+.|.+|+|....|..|......-++++|.-++
T Consensus 37 ~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~G 69 (82)
T PF13807_consen 37 NVSNVRIVDPAIVPDKPVSPKRALILALGLFLG 69 (82)
T ss_pred cCCCceeccccccCCCCCCCcHHHHHHHHHHHH
Confidence 567999999999999998888888888876544
No 117
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=31.38 E-value=88 Score=29.07 Aligned_cols=58 Identities=9% Similarity=-0.034 Sum_probs=38.8
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeC----CC---ceEEEEeecCCCceEEEeCCC-cCChHHHHhh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDA----TG---AKHRAYLKNGPKNEIIVSAGA-LGSPQLLMLS 101 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~----~G---~~~~v~~~~~a~~eVILaaGa-i~TP~LLl~S 101 (382)
++.++.++.|+.|..++ +..+++||..... +| ...+++ ++.||.|.|. =..+++|..-
T Consensus 114 GV~I~~~t~V~dli~~~---~~~~V~GVv~~~~~v~~~g~~~d~~~i~-----Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 114 GAKIFNGTSVEDLITRD---DTVGVAGVVINWSAIELAGLHVDPLTQR-----SRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred CCEEECCcEEEEEEEeC---CCCceEEEEeCCccccccCCCCCCEEEE-----cCEEEEeecCCchHHHHHHHH
Confidence 67788999999998863 1248999987421 12 234565 5999999993 3445555554
No 118
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.32 E-value=88 Score=32.82 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=35.9
Q ss_pred CCcc-cCCCCeEe---------eeCCeEEeecccC--CC---CCCCChHHHHHHHHHHHHHHHHH
Q 016822 324 VGKV-VDHDYKVL---------GVDALRVIDGSTF--YY---SPGTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 324 MGsV-VD~~~rV~---------gv~NL~VvDaSvf--P~---~~~~Np~~Ti~alA~r~A~~i~~ 373 (382)
||++ +|.++++. .++|||.+.--.- +. -.++|..+..+..+.++++.+.+
T Consensus 339 ~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 403 (570)
T PRK05675 339 MGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEK 403 (570)
T ss_pred CCCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHH
Confidence 5654 78888883 4999999876321 11 13568888889999998887764
No 119
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=30.97 E-value=1.4e+02 Score=24.48 Aligned_cols=85 Identities=8% Similarity=0.061 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHcCccccccccc-ccchhhhhhcccCCCCcCCCCCCCChHHHHHHHhccccccCCCcccccCCc
Q 016822 248 EDLQRCVQGISTIEKIIESKSFSKFKYE-SMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK 326 (382)
Q Consensus 248 ~D~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTcrMGs 326 (382)
.-.+.+.++++.++++++..|+...... ..+..++......+| .-......+++|+... -..-.++.|.=..
T Consensus 20 ~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~~~S~-----~I~inG~piE~~l~~~--v~~s~C~~c~~~~ 92 (120)
T PF10865_consen 20 DTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQPLESP-----TIRINGRPIEDLLGAE--VGESPCESCGCSC 92 (120)
T ss_pred hHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcccCCC-----eeeECCEehhHhhCCc--cccCccccccccc
Confidence 3467889999999999998887643322 122122211111111 1122344667776322 2223333333224
Q ss_pred ccCCCCeEeeeCC
Q 016822 327 VVDHDYKVLGVDA 339 (382)
Q Consensus 327 VVD~~~rV~gv~N 339 (382)
.=|.+||++.++|
T Consensus 93 g~~~~CRt~~~~g 105 (120)
T PF10865_consen 93 GGDVDCRTLEYEG 105 (120)
T ss_pred CCCccceeEEECC
Confidence 4577899998877
No 120
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=30.72 E-value=1.1e+02 Score=30.17 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=31.9
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.+.++.++.|.+|..+ ++. +.+...+| +++ ++.||+|+|+ .+++++...|
T Consensus 163 Gv~i~~~~~V~~i~~~-----~~~---~~V~~~~g---~i~-----ad~vV~A~G~-~s~~l~~~~g 212 (393)
T PRK11728 163 GGEIRLGAEVTALDEH-----ANG---VVVRTTQG---EYE-----ARTLINCAGL-MSDRLAKMAG 212 (393)
T ss_pred CCEEEcCCEEEEEEec-----CCe---EEEEECCC---EEE-----eCEEEECCCc-chHHHHHHhC
Confidence 3456778888887654 232 23333344 355 4899999997 5778877665
No 121
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=30.00 E-value=1.4e+02 Score=30.93 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=33.3
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
+.+++++.|+.|..++ ++.. -|.+.+ .+|...+++ ++.||+|||+ .+-+|+..+|
T Consensus 200 v~i~~~~~V~~I~~~~----d~~w-~v~v~~t~~g~~~~i~-----Ad~VV~AAGa-wS~~La~~~G 255 (497)
T PRK13339 200 AQVKYNHEVVDLERLS----DGGW-EVTVKDRNTGEKREQV-----ADYVFIGAGG-GAIPLLQKSG 255 (497)
T ss_pred cEEEeCCEEEEEEECC----CCCE-EEEEEecCCCceEEEE-----cCEEEECCCc-chHHHHHHcC
Confidence 5567788888776541 2222 133322 234323455 4899999997 5577888887
No 122
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=29.77 E-value=1.1e+02 Score=32.21 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=37.4
Q ss_pred ccCCCCeEee-----eCCeEEeec---ccCCC--CCCCChHHHHHHHHHHHHHHHHHhhhhcc
Q 016822 327 VVDHDYKVLG-----VDALRVIDG---STFYY--SPGTNPQATVMMLGRYMGVRILSERLASN 379 (382)
Q Consensus 327 VVD~~~rV~g-----v~NL~VvDa---SvfP~--~~~~Np~~Ti~alA~r~A~~i~~~~~~~~ 379 (382)
.+|.++||.+ ++|||.+.. +++-. .+.++.....+..+..+++++.+...+.+
T Consensus 509 ~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~~ 571 (574)
T PRK12842 509 RTDVTGEVLDADGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGGRK 571 (574)
T ss_pred CCCCCceEECCCCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhcccc
Confidence 4566666665 789999994 44432 12477788889999999998887665544
No 123
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=29.74 E-value=1e+02 Score=32.86 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=37.6
Q ss_pred CCcc-cCCCCeEe---------eeCCeEEeecccC--CCC---CCCChHHHHHHHHHHHHHHHHHh
Q 016822 324 VGKV-VDHDYKVL---------GVDALRVIDGSTF--YYS---PGTNPQATVMMLGRYMGVRILSE 374 (382)
Q Consensus 324 MGsV-VD~~~rV~---------gv~NL~VvDaSvf--P~~---~~~Np~~Ti~alA~r~A~~i~~~ 374 (382)
||++ +|.++||. .++|||.+.--.- ... .++|..+..+..+.++++.+.+.
T Consensus 400 ~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~ 465 (635)
T PLN00128 400 MGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEI 465 (635)
T ss_pred cCCcccCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 6665 89999984 4999999987432 211 24678888899999999887653
No 124
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=29.59 E-value=65 Score=32.83 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=33.6
Q ss_pred eccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 39 SLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 39 v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
+..++.|++|..+ +++ .-|...+.++...+.. .+.||||.|....|++.-.-|
T Consensus 130 I~~~t~V~~V~~~-----~~~-w~V~~~~~~~~~~~~~-----~d~VIvAtG~~~~P~~P~ipG 182 (461)
T PLN02172 130 VRFETEVVRVEPV-----DGK-WRVQSKNSGGFSKDEI-----FDAVVVCNGHYTEPNVAHIPG 182 (461)
T ss_pred EEecCEEEEEeec-----CCe-EEEEEEcCCCceEEEE-----cCEEEEeccCCCCCcCCCCCC
Confidence 6788899998654 222 2244433223332333 389999999998898776655
No 125
>PRK08401 L-aspartate oxidase; Provisional
Probab=28.04 E-value=97 Score=31.50 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=36.6
Q ss_pred cCCCcccccCCcccCCCCeEeeeCCeEEeecccC----CC-CCCCChHHHHHHHHHHHHHHHHH
Q 016822 315 IWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTF----YY-SPGTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 315 ~~H~~GTcrMGsVVD~~~rV~gv~NL~VvDaSvf----P~-~~~~Np~~Ti~alA~r~A~~i~~ 373 (382)
.++.+|+. .||.++| ..++|||.+.--.- =. -.++|..+-.+..+.++++.+.+
T Consensus 306 ~h~t~GGi----~vd~~~~-t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 306 AHYTIGGI----SVDTFYR-TGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred eeecCCCE----EECCCCc-ccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 33444544 4799999 58999999876431 11 13467777777878888887764
No 126
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.86 E-value=92 Score=32.85 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=36.7
Q ss_pred cCCcc-cCCCCeEe---------eeCCeEEeecccC--CC---CCCCChHHHHHHHHHHHHHHHHHh
Q 016822 323 QVGKV-VDHDYKVL---------GVDALRVIDGSTF--YY---SPGTNPQATVMMLGRYMGVRILSE 374 (382)
Q Consensus 323 rMGsV-VD~~~rV~---------gv~NL~VvDaSvf--P~---~~~~Np~~Ti~alA~r~A~~i~~~ 374 (382)
.||++ +|.++||. .++|||.+.--.- +. -.++|..+-.+..+.++++++.+.
T Consensus 356 t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 422 (588)
T PRK08958 356 MMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQES 422 (588)
T ss_pred eCCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 36665 78888884 4999999987432 11 234677788888888888877643
No 127
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=26.96 E-value=1.1e+02 Score=30.00 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=24.2
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCc
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 92 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai 92 (382)
+.++.++.|+.|..+ +++ +.+...+|. .++ ++.||+|+|+-
T Consensus 149 ~~i~~~~~V~~i~~~-----~~~---~~v~t~~g~--~~~-----a~~vV~a~G~~ 189 (381)
T TIGR03197 149 LTLHFNTEITSLERD-----GEG---WQLLDANGE--VIA-----ASVVVLANGAQ 189 (381)
T ss_pred cEEEeCCEEEEEEEc-----CCe---EEEEeCCCC--EEE-----cCEEEEcCCcc
Confidence 345667777777653 222 333333453 244 48999999954
No 128
>PRK06126 hypothetical protein; Provisional
Probab=26.45 E-value=1.2e+02 Score=31.29 Aligned_cols=47 Identities=11% Similarity=-0.014 Sum_probs=31.6
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEe-CCCceEEEEeecCCCceEEEeCCCcCC
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 94 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-~~G~~~~v~~~~~a~~eVILaaGai~T 94 (382)
+.+..++.|+.|..+ ...++ |.+.+ .+|...+++ ++.||.|.|+-..
T Consensus 142 v~i~~~~~v~~i~~~-----~~~v~-v~~~~~~~g~~~~i~-----ad~vVgADG~~S~ 189 (545)
T PRK06126 142 VTLRYGHRLTDFEQD-----ADGVT-ATVEDLDGGESLTIR-----ADYLVGCDGARSA 189 (545)
T ss_pred ceEEeccEEEEEEEC-----CCeEE-EEEEECCCCcEEEEE-----EEEEEecCCcchH
Confidence 567788888888765 33444 55554 346666776 4899999997543
No 129
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.25 E-value=1.2e+02 Score=31.92 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=36.2
Q ss_pred cCCcc-cCCCCeEe-----eeCCeEEeecccC--CC---CCCCChHHHHHHHHHHHHHHHHH
Q 016822 323 QVGKV-VDHDYKVL-----GVDALRVIDGSTF--YY---SPGTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 323 rMGsV-VD~~~rV~-----gv~NL~VvDaSvf--P~---~~~~Np~~Ti~alA~r~A~~i~~ 373 (382)
.||++ +|.+++|. .++|||.+.--.- .. -.++|..+..+..+.++++.+.+
T Consensus 355 t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 416 (583)
T PRK08205 355 AMGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAE 416 (583)
T ss_pred ECCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHH
Confidence 47776 79999984 6999999986432 11 12467777788788888877654
No 130
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=26.20 E-value=93 Score=32.59 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=35.6
Q ss_pred CCcc-cCCCCeEe--------eeCCeEEeecccCCC-----CCCCChHHHHHHHHHHHHHHHHH
Q 016822 324 VGKV-VDHDYKVL--------GVDALRVIDGSTFYY-----SPGTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 324 MGsV-VD~~~rV~--------gv~NL~VvDaSvfP~-----~~~~Np~~Ti~alA~r~A~~i~~ 373 (382)
||++ +|.++||. .++|||.+.--.--. -.++|..+-.+..+.++++.+.+
T Consensus 331 ~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~ 394 (565)
T TIGR01816 331 MGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAE 394 (565)
T ss_pred cCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 7765 89999983 599999998643211 12357777788888888887764
No 131
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=26.15 E-value=1.6e+02 Score=29.98 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=37.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe---C-------CCceEEEEeecCCCceEEEeCCCcCC-hHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD---A-------TGAKHRAYLKNGPKNEIIVSAGALGS-PQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~---~-------~G~~~~v~~~~~a~~eVILaaGai~T-P~LLl~SG 102 (382)
.+.+++++.+.+|.-+ ++++++|++.. . .|...++. ...||+|.|..-+ ..||...|
T Consensus 343 GV~i~~~~~~~~i~~~-----~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~-----~D~VI~A~G~~p~~~~l~~~~g 410 (471)
T PRK12810 343 GVEREFNVQTKEFEGE-----NGKVTGVKVVRTELGEGDFEPVEGSEFVLP-----ADLVLLAMGFTGPEAGLLAQFG 410 (471)
T ss_pred CCeEEeccCceEEEcc-----CCEEEEEEEEEEEecCCCccccCCceEEEE-----CCEEEECcCcCCCchhhccccC
Confidence 4567788888888532 57899998752 1 24445565 5899999995543 44554443
No 132
>PRK12839 hypothetical protein; Provisional
Probab=25.81 E-value=1.2e+02 Score=31.97 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=34.7
Q ss_pred ccCCCCeEee-----eCCeEEeec---ccCCC--CCCCChHHHHHHHHHHHHHHHHH
Q 016822 327 VVDHDYKVLG-----VDALRVIDG---STFYY--SPGTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 327 VVD~~~rV~g-----v~NL~VvDa---SvfP~--~~~~Np~~Ti~alA~r~A~~i~~ 373 (382)
.+|.++||.+ ++|||.+.. |+|-. ..+++.....+..+..+++++.+
T Consensus 510 ~in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 510 VADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred cCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHh
Confidence 5677777776 889999984 45532 23577788888889988887764
No 133
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=25.49 E-value=69 Score=34.00 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=28.4
Q ss_pred CCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcC
Q 016822 42 SCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 42 ~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
++.|..|..+ +++++||... +|. .+. ++.||+|+|++-
T Consensus 120 q~~V~~Li~e-----~grV~GV~t~--dG~--~I~-----Ak~VIlATGTFL 157 (618)
T PRK05192 120 QGEVEDLIVE-----NGRVVGVVTQ--DGL--EFR-----AKAVVLTTGTFL 157 (618)
T ss_pred EeEEEEEEec-----CCEEEEEEEC--CCC--EEE-----CCEEEEeeCcch
Confidence 4577888776 5789999874 464 465 589999999854
No 134
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=25.43 E-value=50 Score=34.96 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=31.1
Q ss_pred CCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHH
Q 016822 42 SCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 99 (382)
Q Consensus 42 ~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl 99 (382)
...|..+..+ +++++.||... +|. .+. ++.||+|+|++...++..
T Consensus 116 e~~Vv~li~e----~~g~V~GV~t~--~G~--~I~-----Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 116 QGEVEDLILE----DNDEIKGVVTQ--DGL--KFR-----AKAVIITTGTFLRGKIHI 160 (617)
T ss_pred EeEEEEEEEe----cCCcEEEEEEC--CCC--EEE-----CCEEEEccCcccCCCEEe
Confidence 3466677655 25688999884 454 455 489999999997655444
No 135
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=25.26 E-value=1.2e+02 Score=31.67 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=38.1
Q ss_pred cCC-cccCCCCeEee-----eCCeEEeec---ccCCC-CC-CCChHHHHHHHHHHHHHHHHHhhh
Q 016822 323 QVG-KVVDHDYKVLG-----VDALRVIDG---STFYY-SP-GTNPQATVMMLGRYMGVRILSERL 376 (382)
Q Consensus 323 rMG-sVVD~~~rV~g-----v~NL~VvDa---SvfP~-~~-~~Np~~Ti~alA~r~A~~i~~~~~ 376 (382)
.+| =.+|.++||.+ ++|||.+.. +++-. -+ .++.....+..+..+++++.+...
T Consensus 487 T~GGl~in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 487 TSGGLLTDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred ECCCccCCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 345 35688888887 899999984 45532 12 367788888889998888876544
No 136
>PRK07233 hypothetical protein; Provisional
Probab=24.97 E-value=79 Score=31.19 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=31.3
Q ss_pred ceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHH
Q 016822 37 VASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 97 (382)
Q Consensus 37 ~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~L 97 (382)
..|.+++.|++|..+ ++++++|.. +|. ++. ++.||+|+..-..++|
T Consensus 213 ~~v~~~~~V~~i~~~-----~~~~~~~~~---~~~--~~~-----ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 213 GEIRLGTPVTSVVID-----GGGVTGVEV---DGE--EED-----FDAVISTAPPPILARL 258 (434)
T ss_pred ceEEeCCCeeEEEEc-----CCceEEEEe---CCc--eEE-----CCEEEECCCHHHHHhh
Confidence 468899999999876 455666652 343 354 4889999986544443
No 137
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=24.64 E-value=1.5e+02 Score=31.03 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=34.3
Q ss_pred cccCCCCeEee-----eCCeEEee---cccCCC--CCCCChHHHHHHHHHHHHHHHHHhh
Q 016822 326 KVVDHDYKVLG-----VDALRVID---GSTFYY--SPGTNPQATVMMLGRYMGVRILSER 375 (382)
Q Consensus 326 sVVD~~~rV~g-----v~NL~VvD---aSvfP~--~~~~Np~~Ti~alA~r~A~~i~~~~ 375 (382)
=.+|.++||.+ ++|||.+. ++++-. .+.++.....+..+..+++++.+..
T Consensus 513 l~in~~~qVld~dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 513 LVTDASARVLNADGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred ccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 45677777776 89999997 344432 1335666777888888888877543
No 138
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=24.47 E-value=1.4e+02 Score=29.50 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=31.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCc-eEEEEeecCCCceEEEeCCCcCChHHHHh
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLML 100 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~-~~~v~~~~~a~~eVILaaGai~TP~LLl~ 100 (382)
.+.+++++.|++|..+ ++.++ |.+.+.++. ..+++ ++.||+|+|+- ++.|+..
T Consensus 211 G~~i~~~~~V~~i~~~-----~~~~~-v~~~~~~~~~~~~i~-----a~~vV~a~G~~-s~~l~~~ 264 (410)
T PRK12409 211 GVQFRYGQEVTSIKTD-----GGGVV-LTVQPSAEHPSRTLE-----FDGVVVCAGVG-SRALAAM 264 (410)
T ss_pred CCEEEcCCEEEEEEEe-----CCEEE-EEEEcCCCCccceEe-----cCEEEECCCcC-hHHHHHH
Confidence 4667888999998754 33332 334332111 23455 48999999964 4555543
No 139
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=24.44 E-value=39 Score=24.11 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.5
Q ss_pred hHHHHhhc--CCCcceeecCCCCCC
Q 016822 95 PQLLMLSG--AHNITVVLDQPLVGQ 117 (382)
Q Consensus 95 P~LLl~SG--~~gi~~~~~~p~VG~ 117 (382)
-.||-+|. ++||-+....+.|||
T Consensus 33 ~diLT~s~~Hp~GIKVrL~dG~VGR 57 (62)
T TIGR03833 33 KDILTNSPTHPHGIKVRLEDGQVGR 57 (62)
T ss_pred hhhhcCCCCCCCceEEEEecCCeee
Confidence 37888887 899999888888997
No 140
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=24.28 E-value=1.3e+02 Score=32.06 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=37.4
Q ss_pred cCCcc-cCCCCeEe---------eeCCeEEeecccC--CC---CCCCChHHHHHHHHHHHHHHHHHh
Q 016822 323 QVGKV-VDHDYKVL---------GVDALRVIDGSTF--YY---SPGTNPQATVMMLGRYMGVRILSE 374 (382)
Q Consensus 323 rMGsV-VD~~~rV~---------gv~NL~VvDaSvf--P~---~~~~Np~~Ti~alA~r~A~~i~~~ 374 (382)
.||++ +|.++||. .++|||.+.--.- .. -.++|..+..+..+.++++.+.+.
T Consensus 378 t~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~ 444 (617)
T PTZ00139 378 NMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEI 444 (617)
T ss_pred ecCCeEEcCCceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 46654 79999985 4999999976331 11 134688888888899988877653
No 141
>PRK10262 thioredoxin reductase; Provisional
Probab=24.13 E-value=2e+02 Score=27.25 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=37.2
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCC--CceEEEEeecCCCceEEEeCCCcCChHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDAT--GAKHRAYLKNGPKNEIIVSAGALGSPQLL 98 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~--G~~~~v~~~~~a~~eVILaaGai~TP~LL 98 (382)
++.+++++.+.+|.-+ +.++++|++.+.. +...++. ...||++.|..-...|+
T Consensus 199 gV~i~~~~~v~~v~~~-----~~~~~~v~~~~~~~~~~~~~i~-----~D~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 199 NIILHTNRTLEEVTGD-----QMGVTGVRLRDTQNSDNIESLD-----VAGLFVAIGHSPNTAIF 253 (321)
T ss_pred CeEEEeCCEEEEEEcC-----CccEEEEEEEEcCCCCeEEEEE-----CCEEEEEeCCccChhHh
Confidence 5677888889888532 3467889887532 3344564 58999999987777654
No 142
>PLN02612 phytoene desaturase
Probab=24.02 E-value=79 Score=33.15 Aligned_cols=42 Identities=5% Similarity=-0.043 Sum_probs=31.0
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCC
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAG 90 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaG 90 (382)
..+|++++.|++|..++ ++++++|+.. +|+ .+. ++.||++..
T Consensus 322 G~~I~l~~~V~~I~~~~----~g~v~~v~~~--~G~--~~~-----ad~VI~a~p 363 (567)
T PLN02612 322 GGEVRLNSRIKKIELND----DGTVKHFLLT--NGS--VVE-----GDVYVSATP 363 (567)
T ss_pred CCEEEeCCeeeEEEECC----CCcEEEEEEC--CCc--EEE-----CCEEEECCC
Confidence 56789999999998862 4677777773 565 344 478998864
No 143
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=23.91 E-value=1e+02 Score=30.75 Aligned_cols=64 Identities=11% Similarity=-0.074 Sum_probs=41.5
Q ss_pred HHHHHHhccccccCCCccccc-------CC----cccCCC-CeEeeeCCeEEeecccCCCCCCCChHHHHHHHHHHHHH
Q 016822 303 SLEQFCRDTVMTIWHYHGGCQ-------VG----KVVDHD-YKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGV 369 (382)
Q Consensus 303 ~~~~~~~~~~~~~~H~~GTcr-------MG----sVVD~~-~rV~gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~ 369 (382)
.+.+.+++. ...+.||-. +| ..+|+. +..+.|+|||.++-=+=-+.+.+.-++|..-..-++|-
T Consensus 325 ~l~~~ik~~---~i~~~Gt~~~~~A~VT~GGV~~~eid~kTmesk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag 400 (408)
T COG2081 325 QLAAALKAW---PITPNGTEPYREAEVTAGGVDTKEIDSKTMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAG 400 (408)
T ss_pred HHHHHHhcC---eeeccCCcccceeEEecCceehhhcCHHHHHhhcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHH
Confidence 333444443 456666633 34 478888 99999999999887766677777666665444444443
No 144
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=23.09 E-value=1.3e+02 Score=31.64 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=33.5
Q ss_pred ccCCCCeEee-----eCCeEEee---cccCC-CCC-CCChHHHHHHHHHHHHHHHHH
Q 016822 327 VVDHDYKVLG-----VDALRVID---GSTFY-YSP-GTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 327 VVD~~~rV~g-----v~NL~VvD---aSvfP-~~~-~~Np~~Ti~alA~r~A~~i~~ 373 (382)
.+|.++||.+ ++|||.+. ++++- .-+ .++.....+..+..+++++.+
T Consensus 507 ~id~~~qVLd~dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 507 RADERARVLREDGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred eECCCceEECCCCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 4577777776 78999997 45553 222 377788888889988887753
No 145
>PRK12831 putative oxidoreductase; Provisional
Probab=22.99 E-value=2.4e+02 Score=28.64 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=35.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-------CCC---------ceEEEEeecCCCceEEEeCCCcCChHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-------ATG---------AKHRAYLKNGPKNEIIVSAGALGSPQLL 98 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-------~~G---------~~~~v~~~~~a~~eVILaaGai~TP~LL 98 (382)
.+.+++++.+.+|.-+ ++++++||++.. .+| ..+++. ...||+|.|..-...+|
T Consensus 332 GV~i~~~~~~~~i~~~----~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~-----~D~Vi~AiG~~p~~~~~ 401 (464)
T PRK12831 332 GVIFDLLTNPVEILGD----ENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLE-----VDTVIMSLGTSPNPLIS 401 (464)
T ss_pred CCEEEecccceEEEec----CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEE-----CCEEEECCCCCCChhhh
Confidence 3556778888888654 257899998751 123 334454 58999999966544433
No 146
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=22.93 E-value=44 Score=34.80 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=39.3
Q ss_pred cchhhhhccccceeeeeeecccCceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcC
Q 016822 14 VGQYLIKMAKDTQLLICWSMLIPVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 93 (382)
Q Consensus 14 ~~~~~~~~~~~t~~~~~~~~~~p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~ 93 (382)
+-+||..+|+.-.+. -.+..++.|.+|...+.....++ .-|+. +.+|+..+... +.||+|.|...
T Consensus 86 v~~Yl~~Ya~~f~L~--------~~I~fnt~V~~v~~~~d~~~~~~-W~V~~-~~~g~~~~~~f-----D~VvvatG~~~ 150 (531)
T PF00743_consen 86 VLEYLESYAEHFGLR--------KHIRFNTEVVSVERDPDFSATGK-WEVTT-ENDGKEETEEF-----DAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHHHHHTTGG--------GGEETSEEEEEEEEETTTT-ETE-EEEEE-TTTTEEEEEEE-----CEEEEEE-SSS
T ss_pred HHHHHHHHHhhhCCc--------ceEEEccEEeEeeeccccCCCce-EEEEe-ecCCeEEEEEe-----CeEEEcCCCcC
Confidence 445666666554333 24678999999987532111121 22333 23465443332 78999999999
Q ss_pred ChHHH
Q 016822 94 SPQLL 98 (382)
Q Consensus 94 TP~LL 98 (382)
.|.+=
T Consensus 151 ~P~~P 155 (531)
T PF00743_consen 151 KPNIP 155 (531)
T ss_dssp CESB-
T ss_pred CCCCC
Confidence 99654
No 147
>CHL00051 rps12 ribosomal protein S12
Probab=21.95 E-value=62 Score=26.55 Aligned_cols=23 Identities=9% Similarity=0.262 Sum_probs=17.3
Q ss_pred cceeecCCCCCCCCCCCCCCeeE
Q 016822 106 ITVVLDQPLVGQGMSDNPMNAIF 128 (382)
Q Consensus 106 i~~~~~~p~VG~nL~DH~~~~v~ 128 (382)
-.+..-.|+-|.||++|..+.+-
T Consensus 61 k~v~AyIPGeGhnlqehs~VLvr 83 (123)
T CHL00051 61 FEITAYIPGIGHNLQEHSVVLVR 83 (123)
T ss_pred CEEEEEcCCCCccccccCEEEEe
Confidence 44455678999999999876554
No 148
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=21.64 E-value=1.2e+02 Score=29.25 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=24.3
Q ss_pred CCeEEeecccCCCCCCCChHHHHHHHHHHHHHHHH
Q 016822 338 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 372 (382)
Q Consensus 338 ~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~~i~ 372 (382)
+|||.+...+.|...+ -+--.+.-|+++|+.|+
T Consensus 418 ~~l~~aG~~~~~~~~~--~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYPG--GIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTEEE-SGGGSSSSTT--SHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCCC--cHHHHHHHHHHHHHHhC
Confidence 7999999999997542 34445667889998875
No 149
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=21.62 E-value=1.2e+02 Score=31.10 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=23.4
Q ss_pred eeeCCeEEeecccCCCCCCCChHHHHHHHHHHHHHHHHH
Q 016822 335 LGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 373 (382)
Q Consensus 335 ~gv~NL~VvDaSvfP~~~~~Np~~Ti~alA~r~A~~i~~ 373 (382)
-.++|||.+.+|++|-. +=|. +++-|..+|+.|++
T Consensus 456 t~i~gLyl~G~~~~pG~--Gv~g--~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 456 TAIPGLYCVGDSCFPGQ--GLNA--VAFSGFACAHRVAA 490 (493)
T ss_pred CCCCCeEEecCcCCCCC--CHHH--HHHHHHHHHHHHHh
Confidence 56999999999999832 2222 33446666666664
No 150
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=20.63 E-value=2.4e+02 Score=31.79 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=42.0
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEeCCCceEEEEeecCCCceEEEeCCCcCChHHHHhhc
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 102 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~~~G~~~~v~~~~~a~~eVILaaGai~TP~LLl~SG 102 (382)
.+.+++++.|.+|.- .+++++|++...+|...++. ...|+++.|..-+..|+...|
T Consensus 365 GV~i~~~~~v~~i~g------~~~v~~V~l~~~~g~~~~i~-----~D~V~va~G~~Pnt~L~~~lg 420 (985)
T TIGR01372 365 GIEVLTGHVVAATEG------GKRVSGVAVARNGGAGQRLE-----ADALAVSGGWTPVVHLFSQRG 420 (985)
T ss_pred CCEEEcCCeEEEEec------CCcEEEEEEEecCCceEEEE-----CCEEEEcCCcCchhHHHHhcC
Confidence 466788888888752 35688898874345555665 589999999999999888776
No 151
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=20.36 E-value=2.4e+02 Score=29.70 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=35.1
Q ss_pred cCCc-ccCCCCeEee-----eCCeEEee---cccCCC--CCCCChHHHHHHHHHHHHHHHHHhh
Q 016822 323 QVGK-VVDHDYKVLG-----VDALRVID---GSTFYY--SPGTNPQATVMMLGRYMGVRILSER 375 (382)
Q Consensus 323 rMGs-VVD~~~rV~g-----v~NL~VvD---aSvfP~--~~~~Np~~Ti~alA~r~A~~i~~~~ 375 (382)
.||+ .+|.++||.+ ++|||.+. +++|-. .++++.....+..+..+++++.+..
T Consensus 507 T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 507 TSGGLRTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred cCcCccCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 4553 4577777776 68999998 455532 1235566777888888888776543
No 152
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=20.21 E-value=3.3e+02 Score=27.49 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=35.4
Q ss_pred CceeccCCccceEEeeccCCCCCeEEEEEEEe-------CCC---------ceEEEEeecCCCceEEEeCCCcCChHHH
Q 016822 36 PVASLCSCMPPCIRFCSELKARPVAHGVVFRD-------ATG---------AKHRAYLKNGPKNEIIVSAGALGSPQLL 98 (382)
Q Consensus 36 p~~v~t~a~V~rI~~~~~~~~~~rAtGV~~~~-------~~G---------~~~~v~~~~~a~~eVILaaGai~TP~LL 98 (382)
.+.+++++.+.+|.-+ +++++++|++.. .+| ..+++. ...||+|.|..-...+|
T Consensus 323 GV~~~~~~~~~~i~~~----~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-----~D~Vi~AiG~~p~~~~l 392 (449)
T TIGR01316 323 GVKFHFLCQPVEIIGD----EEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLE-----ADAVIVAIGNGSNPIMA 392 (449)
T ss_pred CCEEEeccCcEEEEEc----CCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEE-----CCEEEECCCCCCCchhh
Confidence 4567788888888643 257899998851 123 233454 58999999965444333
Done!