BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016823
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 17/68 (25%)
Query: 1 MVKETEYYDVLGVSPTASEAEIKKAYY-----------------IKVLGEAYQVLSDPAQ 43
MVKET+ YD+LGVSP+A+E E+KK Y K + EA+++L+DP +
Sbjct: 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQK 63
Query: 44 RQAYDAYG 51
R+ YD YG
Sbjct: 64 REIYDQYG 71
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 17/68 (25%)
Query: 1 MVKETEYYDVLGVSPTASEAEIKKAYY-----------------IKVLGEAYQVLSDPAQ 43
MVKET YYDVLGV P AS+ E+KKAY K + +AY+VLSD +
Sbjct: 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKK 63
Query: 44 RQAYDAYG 51
RQ YD G
Sbjct: 64 RQIYDQGG 71
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 17/68 (25%)
Query: 1 MVKETEYYDVLGVSPTASEAEIKKAYY-----------------IKVLGEAYQVLSDPAQ 43
MVKET YYDVLGV P A++ E+KKAY K + +AY+VLSD +
Sbjct: 2 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKK 61
Query: 44 RQAYDAYG 51
R+ YD G
Sbjct: 62 RELYDKGG 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 25/100 (25%)
Query: 6 EYYDVLGVSPTASEAEIKKAY--------------------YIKVLGEAYQVLSDPAQRQ 45
+YY++LGVS TA E EI+KAY K + EAY+VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 46 AYDAYGKSGIS----TEAIIDPAAIFAMLFGSELFEDYIG 81
AYD YG + A F+ +FG ++F D G
Sbjct: 64 AYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 102
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 21/72 (29%)
Query: 6 EYYDVLGVSPTASEAEIKKAYY--------------------IKVLGEAYQVLSDPAQRQ 45
+YY +LGV AS+ EIKKAYY L EAY+VLSD +R+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 46 AYDAYGKSGIST 57
YDAYG SG S+
Sbjct: 68 QYDAYG-SGPSS 78
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 25/100 (25%)
Query: 6 EYYDVLGVSPTASEAEIKKAY--------------------YIKVLGEAYQVLSDPAQRQ 45
+YY++LGVS TA E EI+KAY K + EAY+VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 46 AYDAYGKSGIS----TEAIIDPAAIFAMLFGSELFEDYIG 81
AYD YG + A F+ +FG ++F D G
Sbjct: 64 AYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 102
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 20/70 (28%)
Query: 6 EYYDVLGVSPTASEAEIKKAY--------------------YIKVLGEAYQVLSDPAQRQ 45
+YY++LGVS TA E EI+KAY K + EAY+VL+D +R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 46 AYDAYGKSGI 55
AYD YG +
Sbjct: 64 AYDQYGHAAF 73
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 19/69 (27%)
Query: 6 EYYDVLGVSPTASEAEIKKAYY-------------------IKVLGEAYQVLSDPAQRQA 46
+YY LG++ AS+ EIK+AY K + EAY VLSDP +R+
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 47 YDAYGKSGI 55
+D YG+ G+
Sbjct: 64 FDRYGEEGL 72
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 19/70 (27%)
Query: 7 YYDVLGVSPTASEAEIKKAYY-------------------IKVLGEAYQVLSDPAQRQAY 47
YYD+LGV +ASE +IKKA++ + + EAY+ LSD +R+ Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 48 DAYGKSGIST 57
D G S ++
Sbjct: 69 DTLGHSAFTS 78
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 20/71 (28%)
Query: 6 EYYDVLGVSPTASEAEIKKAYY-------------------IKVLGEAYQVLSDPAQRQA 46
+YY++LGVS AS+ ++KKAY K +G AY VLS+P +R+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 47 YDAYGKSGIST 57
YD +G SG S+
Sbjct: 68 YDQFG-SGPSS 77
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 21/71 (29%)
Query: 7 YYDVLGVSPTASEAEIKKAYYIKVL---------------------GEAYQVLSDPAQRQ 45
YY++L V +AS +IKKAY K L EAY+VLSD +R+
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 46 AYDAYGKSGIS 56
YD YG+ G++
Sbjct: 64 IYDRYGREGLT 74
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 21/66 (31%)
Query: 7 YYDVLGVSPTASEAEIKKAYY---------------------IKVLGEAYQVLSDPAQRQ 45
YY+VLGV +AS +IKKAY K++ EAY+VLSD +R
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 46 AYDAYG 51
YD G
Sbjct: 71 LYDRAG 76
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 22/70 (31%)
Query: 8 YDVLGVSPTASEAEIKKAY--------------------YIKVLGEAYQVLSDPAQRQAY 47
Y VLGVS TAS+A+IKKAY +I++ +AY++LS+ +R Y
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQI-SKAYEILSNEEKRTNY 78
Query: 48 DAYGKSGIST 57
D YG SG S+
Sbjct: 79 DHYG-SGPSS 87
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 22/70 (31%)
Query: 7 YYDVLGVSPTASEAEIKKAY---------------------YIKVLGEAYQVLSDPAQRQ 45
+Y +LGVS TAS EI++A+ ++K+ AY+VL D R+
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKI-NRAYEVLKDEDLRK 62
Query: 46 AYDAYGKSGI 55
YD YG+ G+
Sbjct: 63 KYDKYGEKGL 72
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 22/70 (31%)
Query: 7 YYDVLGVSPTASEAEIKKAY---------------------YIKVLGEAYQVLSDPAQRQ 45
+Y +LGVS TAS EI++A+ ++K+ AY+VL D R+
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKI-NRAYEVLKDEDLRK 81
Query: 46 AYDAYGKSGI 55
YD YG+ G+
Sbjct: 82 KYDKYGEKGL 91
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 22/74 (29%)
Query: 5 TEYYDVLGVSPTASEAEIKKAYY---------------------IKVLGEAYQVLSDPAQ 43
+YY+VL V AS IKKAY K + EAY+VLSD +
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 44 RQAYDAYGKSGIST 57
R YD YG SG S+
Sbjct: 69 RDIYDRYG-SGPSS 81
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 20/64 (31%)
Query: 5 TEYYDVLGVSPTASEAEIKKAYYIKV--------------------LGEAYQVLSDPAQR 44
T YD+LGV TA++A+IK AYY + + +AY VL R
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
Query: 45 QAYD 48
+ YD
Sbjct: 77 RKYD 80
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 19/62 (30%)
Query: 6 EYYDVLGVSPTASEAEIKKAYY-------------------IKVLGEAYQVLSDPAQRQA 46
+YY +LGV PT IK AY K L EA++VL D +R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 47 YD 48
YD
Sbjct: 89 YD 90
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 20/68 (29%)
Query: 8 YDVLGVSPTASEAEIKKAYY--------------------IKVLGEAYQVLSDPAQRQAY 47
Y VLG+ A+ +IKK+Y K + A+ +L+D +R Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 48 DAYGKSGI 55
D YG G+
Sbjct: 80 DKYGSLGL 87
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 19/62 (30%)
Query: 6 EYYDVLGVSPTASEAEIKKAY-------------------YIKVLGEAYQVLSDPAQRQA 46
+YY ++GV PT IK AY K + EA++VLSD +R
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 47 YD 48
YD
Sbjct: 66 YD 67
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 113 QKEREEKLADILRGRLNQYVQGNKEDFINYAEAEVSRLSNAAYGVDMLNTIGYIY 167
+K+R +++ ++ + ++ N EDF++Y + +++R+ VD N + IY
Sbjct: 534 KKDRHYEMSSMVETQALNKLKDNPEDFVDYNKKQITRIYPKGTRVDSSNYVPQIY 588
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 47 YDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTEGEEFD 101
+DAY SG + P I + F + YIG +++ S L+I +G EF+
Sbjct: 395 WDAYSGSGHQKRKALKPTVILILAFFACWLPYYIG-ISIDSFILLEIIKQGCEFE 448
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 113 QKEREEKLADILRGRLNQYVQGNKEDFINYAEAEVSRLSNAAYGVDMLNTIGYIY 167
+K+R +++ ++ + ++ N EDF++Y + +++R+ VD N + IY
Sbjct: 534 KKDRHYEMSSMVETQALNKLKDNPEDFVDYNKKQLTRIYPKGTRVDSSNYVPQIY 588
>pdb|4F3V|A Chain A, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
From Esx-1 Secretion System Of Mycobacterium
Tuberculosis
pdb|4F3V|B Chain B, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
From Esx-1 Secretion System Of Mycobacterium
Tuberculosis
Length = 282
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 73 SELFEDYIGQLAMASVASLDIFTEGEEFD 101
+ LFE + L M+ SLD+FTE +D
Sbjct: 8 ASLFESAVSMLPMSEARSLDLFTEITNYD 36
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 25/67 (37%)
Query: 6 EYYDVLGVSPTASEAEIKKAY------------------------YIKVLGEAYQVLSDP 41
+YY +LGV A + EI KAY +I + A +VLSDP
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA-AKEVLSDP 441
Query: 42 AQRQAYD 48
R+ +D
Sbjct: 442 EMRKKFD 448
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,947,328
Number of Sequences: 62578
Number of extensions: 356670
Number of successful extensions: 676
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 26
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)