BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016824
(382 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6L9S2|SYT_PARD8 Threonine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC 11152) GN=thrS PE=3 SV=1
Length = 651
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 32/187 (17%)
Query: 141 KFGSGPEPQSGFYI------AVVVDGEMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLR 194
KFG GP ++GFY AV+ +G+ + + ++ K + ++ + ++A
Sbjct: 91 KFGIGPAIENGFYYDVDPGEAVIKEGDFAAIEAKMLELVAKKEEIKRQDITKADAM---- 146
Query: 195 REHVFGNKVYTTKAKFGGKTRDVSIDCSTSND-ARLCFS--------VDNVRVLQIKRLK 245
+FG++ K + + D +I T LC + V++L +
Sbjct: 147 --KMFGDRGEEYKTELISELEDGTITTYTQGSFTDLCRGPHLPNTSYLKAVKILSVAGAY 204
Query: 246 WKFRGNER----IDVDGV--PVQISWDVYNWLFDDFKSNKNDGNGHAVFMFRFEDTVDNE 299
W RG+E+ + + G+ P + D Y L ++ K + G + +F F DTV
Sbjct: 205 W--RGDEKRKQLVRLYGITFPKKKMLDEYLTLLEEAKKRDHRKIGKEMDLFMFSDTVG-- 260
Query: 300 EEQEPMW 306
+ PMW
Sbjct: 261 -KGLPMW 266
>sp|A9KLM0|RL19_CLOPH 50S ribosomal protein L19 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rplS PE=3 SV=1
Length = 115
Score = 34.3 bits (77), Expect = 1.6, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 166 VGDCIKEAYAKTKAQKPERSQAPQALVLRREHVFGNKVYTTKAKFGGKTRDVSIDCSTSN 225
VGD +K YAK K ER+Q + +VL+R++ + +T + + G V ++ +
Sbjct: 22 VGDTVK-VYAKVKEGNRERTQVFEGVVLKRQNGGARETFTVRKQSNG----VGVEKTWPV 76
Query: 226 DARLCFSVDNVRVLQIKRLKWKF 248
+ + V+ VR+ +++R K +
Sbjct: 77 HSPIVEKVEVVRLGKVRRAKLTY 99
>sp|Q64VP2|SYT_BACFR Threonine--tRNA ligase OS=Bacteroides fragilis (strain YCH46)
GN=thrS PE=3 SV=1
Length = 646
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 73/186 (39%), Gaps = 30/186 (16%)
Query: 141 KFGSGPEPQSGFYIAVVVDGEMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLRRE---- 196
+FG GP ++GFY V GE IKEA K A + V+RR+
Sbjct: 91 QFGIGPAIENGFYYD-VDPGEA------VIKEADLPAIEAKMAELVAKKEAVVRRDIAKG 143
Query: 197 ---HVFGNKVYTTKAKFGGKTRDVSIDCSTSND-ARLCFSVDNVRVLQIKRLKWK----- 247
+FG++ T K + + D I T D LC + IK +K
Sbjct: 144 DALKMFGDRGETYKCELISELEDGHITTYTQGDFTDLCRGPHLMTTAPIKAIKLTSVAGA 203
Query: 248 -FRGNE------RIDVDGVPVQISWDVYNWLFDDFKSNKNDGNGHAVFMFRFEDTVDNEE 300
+RG+E RI P + D Y L ++ K + G + +F F DTV
Sbjct: 204 YWRGHEDRKMLTRIYGITFPKKKMLDEYLALMEEAKKRDHRKIGKEMQLFMFSDTVG--- 260
Query: 301 EQEPMW 306
+ PMW
Sbjct: 261 KGLPMW 266
>sp|Q5LEQ6|SYT_BACFN Threonine--tRNA ligase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=thrS PE=3 SV=1
Length = 646
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 73/186 (39%), Gaps = 30/186 (16%)
Query: 141 KFGSGPEPQSGFYIAVVVDGEMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLRRE---- 196
+FG GP ++GFY V GE IKEA K A + V+RR+
Sbjct: 91 QFGIGPAIENGFYYD-VDPGEA------VIKEADLPAIEAKMAELVAKKEAVVRRDIAKG 143
Query: 197 ---HVFGNKVYTTKAKFGGKTRDVSIDCSTSND-ARLCFSVDNVRVLQIKRLKWK----- 247
+FG++ T K + + D I T D LC + IK +K
Sbjct: 144 DALKMFGDRGETYKCELISELEDGHITTYTQGDFTDLCRGPHLMTTAPIKAIKLTSVAGA 203
Query: 248 -FRGNE------RIDVDGVPVQISWDVYNWLFDDFKSNKNDGNGHAVFMFRFEDTVDNEE 300
+RG+E RI P + D Y L ++ K + G + +F F DTV
Sbjct: 204 YWRGHEDRKMLTRIYGITFPKKKMLDEYLALMEEAKKRDHRKIGKEMQLFMFSDTVG--- 260
Query: 301 EQEPMW 306
+ PMW
Sbjct: 261 KGLPMW 266
>sp|Q58444|RPOB2_METJA DNA-directed RNA polymerase subunit B'' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB2 PE=3 SV=1
Length = 498
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 142 FGSGPEPQSGFYIAVVVDGEMSLLVGDCIKEAYAKTKAQKPERSQAPQ------------ 189
G G + + G + V + GE+ +++G I Y K++ + + + P+
Sbjct: 99 IGEGEDAREGETVEVYI-GELPVMLGSKICHLYGKSREELIDLGEDPEDPFGYFIINGTE 157
Query: 190 ALVLRREHVFGNKVYTTKAKFGGKTRDVSIDCSTSNDARLCFSVDN 235
+++ +E + N++ KA+ GK DV+ ST + R +V+
Sbjct: 158 KVLITQEDLIPNRILCEKAERSGKIVDVAKVFSTRHGFRALCTVER 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,690,237
Number of Sequences: 539616
Number of extensions: 6517511
Number of successful extensions: 51160
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 48936
Number of HSP's gapped (non-prelim): 1512
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)