Query 016824
Match_columns 382
No_of_seqs 117 out of 138
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:08:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05910 DUF868: Plant protein 100.0 6E-108 1E-112 783.9 31.8 226 42-295 2-237 (274)
2 PF05910 DUF868: Plant protein 91.1 0.35 7.6E-06 48.0 5.1 70 203-274 10-88 (274)
3 cd00110 LamG Laminin G domain; 90.3 2.2 4.7E-05 35.5 8.5 80 149-260 45-127 (151)
4 COG0139 HisI Phosphoribosyl-AM 71.5 11 0.00024 33.3 5.7 71 150-234 16-91 (111)
5 PRK00051 hisI phosphoribosyl-A 69.4 13 0.00029 33.3 5.9 69 150-233 12-86 (125)
6 PF02210 Laminin_G_2: Laminin 61.1 20 0.00043 28.6 5.0 47 211-260 53-102 (128)
7 smart00282 LamG Laminin G doma 60.6 18 0.00038 30.1 4.8 50 208-260 57-109 (135)
8 PF05506 DUF756: Domain of unk 54.1 48 0.001 26.8 6.1 60 206-273 11-74 (89)
9 PF14099 Polysacc_lyase: Polys 42.9 32 0.0007 31.5 3.9 51 211-269 151-203 (224)
10 PF06439 DUF1080: Domain of Un 42.8 37 0.00079 29.6 4.1 34 211-247 126-159 (185)
11 PRK02759 bifunctional phosphor 40.6 73 0.0016 30.8 6.0 70 150-234 14-89 (203)
12 PF12101 DUF3577: Protein of u 36.2 54 0.0012 29.9 4.1 12 229-240 117-128 (137)
13 PF06905 FAIM1: Fas apoptotic 34.6 1.7E+02 0.0037 27.6 7.3 44 211-258 14-59 (177)
14 smart00210 TSPN Thrombospondin 31.8 62 0.0013 29.4 3.9 45 209-259 114-158 (184)
15 PF00054 Laminin_G_1: Laminin 28.7 1.2E+02 0.0026 25.7 5.0 47 211-260 52-101 (131)
16 smart00216 VWD von Willebrand 27.4 4E+02 0.0087 22.9 8.8 40 228-267 82-126 (162)
17 KOG0273 Beta-transducin family 24.5 63 0.0014 35.0 2.9 28 241-268 279-306 (524)
18 TIGR02148 Fibro_Slime fibro-sl 23.3 74 0.0016 27.2 2.6 23 218-242 21-43 (90)
19 PLN02346 histidine biosynthesi 23.2 1.5E+02 0.0033 29.8 5.2 70 151-234 53-127 (271)
20 KOG2463 Predicted RNA-binding 23.1 1.2E+02 0.0026 31.7 4.5 24 230-253 274-298 (376)
21 cd08687 C2_PKN-like C2 domain 21.0 2.9E+02 0.0062 24.2 5.7 54 225-294 9-71 (98)
No 1
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=100.00 E-value=6.5e-108 Score=783.88 Aligned_cols=226 Identities=53% Similarity=0.947 Sum_probs=209.9
Q ss_pred CCCceEEEEEEeee----ceEEEEccccccCCeeEEEeecCCCCCCCCCcccCCCCCCcccceeeeecccceeeeccccc
Q 016824 42 GKPNLSTCLYNTHL----GLFSLTWSMTLFGHSLHLDHHPFDYGNSSPISFCSNSSFSHAAFSFHLHIKPLIFWKKRGSK 117 (382)
Q Consensus 42 ~~qn~vTcvY~t~L----~litvTWsk~l~g~sLsv~v~~~~~~~~sp~~~~~~~~~~~~t~s~k~~ikPw~FwkKkGSK 117 (382)
++||+|||||||+| ++||||||||+|||+|+|.|++.+++ ..++||+++|||+||||||||
T Consensus 2 s~q~~vT~vY~~~l~g~~~litvTWsk~~~g~~Lsv~v~~~~~~---------------~~~~~k~~~~p~~fwkkkGsK 66 (274)
T PF05910_consen 2 SPQNSVTCVYQTKLSGKPRLITVTWSKNLLGQSLSVSVDDASGS---------------SSSSCKVDLKPWLFWKKKGSK 66 (274)
T ss_pred CCCceEEEEEEEEecCCceEEEEEEeCCccCCeEEEEEeCcccc---------------ccccccccCccceeEecCCcc
Confidence 58999999999999 69999999999999999999975431 246899999999999999999
Q ss_pred eeEeeeccCCCCcEEEEecCCCcccCCCCccCcccEEEEEECceEEEEecCcchHHHHHhhcCCCCCCCCCeeeEEeeEE
Q 016824 118 KLSVITTNKASKNIQLFWDLSKAKFGSGPEPQSGFYIAVVVDGEMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLRREH 197 (382)
Q Consensus 118 sf~~~~~~~~~~~V~v~WDLs~Akf~sgPEP~sgfYVAVV~d~EvvLlLGDl~kea~~ktk~~~~~~~~~~a~LvsRREh 197 (382)
+|+ +++++|+|||||++|||+++|||++|||||||+|+|||||||||++|||+|++++|++. +++||+||||
T Consensus 67 sf~-----~~~~~v~v~WDLs~Akf~s~PEP~sgfYVavv~d~EvvLllGDl~~ea~~rt~~~~~~~---~~~LvsRrEh 138 (274)
T PF05910_consen 67 SFE-----VDGPKVDVFWDLSSAKFGSGPEPVSGFYVAVVVDGEVVLLLGDLKKEAYKRTKSRPSPS---EAVLVSRREH 138 (274)
T ss_pred ccc-----cCCceEEEEeCccccccCCCCCCCCccEEEEEECCEEEEEecCchhHHHhhccCCCCcc---ceeEEEEEEE
Confidence 995 46899999999999999999999999999999999999999999999999999998765 9999999999
Q ss_pred EeeeceEEeeEEE--CCccceEEEEeC----CCCCccEEEEEcCEEEEEEeecccccccceeEEeCCcEEEEEEEccccc
Q 016824 198 VFGNKVYTTKAKF--GGKTRDVSIDCS----TSNDARLCFSVDNVRVLQIKRLKWKFRGNERIDVDGVPVQISWDVYNWL 271 (382)
Q Consensus 198 V~G~~~y~TkA~F--~G~~HeI~Iec~----~~~d~~L~VsVDgk~vlqVkRL~WkFRGNetI~vdG~~V~V~WDVHdWl 271 (382)
|||++.|+||||| .|++|||+|||. +..||+|||+||||+|||||||||||||||||+|||++|||||||||||
T Consensus 139 v~G~~~~~Tka~F~e~G~~HeI~Iec~~~~~g~~dp~l~V~VDgk~v~~VkrL~WkFRGNqti~vdg~~V~V~WDVHdWl 218 (274)
T PF05910_consen 139 VFGKKVYSTKARFCEGGKEHEISIECGGETGGPKDPELWVSVDGKKVVQVKRLRWKFRGNQTIFVDGLPVQVFWDVHDWL 218 (274)
T ss_pred EEEEEEEeeEEEEcCCCcEEEEEEEEeccCCCCCCceEEEEECCEEEEEEEEeeecccCceEEEECCeEEEEEEEhhhhh
Confidence 9999999999999 799999999992 3468999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcceEEEEEecCC
Q 016824 272 FDDFKSNKNDGNGHAVFMFRFEDT 295 (382)
Q Consensus 272 F~~~~s~~~~~~g~AVFmFr~~~~ 295 (382)
|++++ +.||||||||++++
T Consensus 219 F~~~~-----~~~~AVFmFr~~~~ 237 (274)
T PF05910_consen 219 FNNGP-----GSGHAVFMFRPRSG 237 (274)
T ss_pred hccCC-----CCCceEEEEEecCC
Confidence 98542 23699999999975
No 2
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=91.13 E-value=0.35 Score=48.05 Aligned_cols=70 Identities=33% Similarity=0.590 Sum_probs=47.1
Q ss_pred eEEeeEEECCccceEEEE-eCCCCCccEEEEEcCEE-----E--EEEe-ecccccccceeEEeCCcEEEEEEEccccccc
Q 016824 203 VYTTKAKFGGKTRDVSID-CSTSNDARLCFSVDNVR-----V--LQIK-RLKWKFRGNERIDVDGVPVQISWDVYNWLFD 273 (382)
Q Consensus 203 ~y~TkA~F~G~~HeI~Ie-c~~~~d~~L~VsVDgk~-----v--lqVk-RL~WkFRGNetI~vdG~~V~V~WDVHdWlF~ 273 (382)
+|.|+ +.|+..-|.|- |...-...|.|.||.-. . +.+| .|=||=||+.++.++|-.|+|+||+=.==|+
T Consensus 10 vY~~~--l~g~~~litvTWsk~~~g~~Lsv~v~~~~~~~~~~~k~~~~p~~fwkkkGsKsf~~~~~~v~v~WDLs~Akf~ 87 (274)
T PF05910_consen 10 VYQTK--LSGKPRLITVTWSKNLLGQSLSVSVDDASGSSSSSCKVDLKPWLFWKKKGSKSFEVDGPKVDVFWDLSSAKFG 87 (274)
T ss_pred EEEEE--ecCCceEEEEEEeCCccCCeEEEEEeCccccccccccccCccceeEecCCccccccCCceEEEEeCccccccC
Confidence 34444 36666666665 44433444777776544 1 1111 4558899999999999999999999887775
Q ss_pred C
Q 016824 274 D 274 (382)
Q Consensus 274 ~ 274 (382)
.
T Consensus 88 s 88 (274)
T PF05910_consen 88 S 88 (274)
T ss_pred C
Confidence 4
No 3
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=90.28 E-value=2.2 Score=35.55 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=55.6
Q ss_pred CcccEEEEEECceEEEEecCcchHHHHHhhcCCCCCCCCCeeeEEeeEEEeeeceEEeeEEE-CCccceEEEEeCCCCCc
Q 016824 149 QSGFYIAVVVDGEMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLRREHVFGNKVYTTKAKF-GGKTRDVSIDCSTSNDA 227 (382)
Q Consensus 149 ~sgfYVAVV~d~EvvLlLGDl~kea~~ktk~~~~~~~~~~a~LvsRREhV~G~~~y~TkA~F-~G~~HeI~Iec~~~~d~ 227 (382)
...|+.+-+.++.+.+.+..... .+ .+.+..++ .|+.|.|.|+... .
T Consensus 45 ~~~~~~l~l~~g~l~~~~~~g~~-----------------~~------------~~~~~~~v~dg~Wh~v~i~~~~---~ 92 (151)
T cd00110 45 GGDFLALELEDGRLVLRYDLGSG-----------------SL------------VLSSKTPLNDGQWHSVSVERNG---R 92 (151)
T ss_pred CCCEEEEEEECCEEEEEEcCCcc-----------------cE------------EEEccCccCCCCEEEEEEEECC---C
Confidence 55676666779999988877411 01 11222246 5999999999965 4
Q ss_pred cEEEEEcCEEEEEEeeccc--ccccceeEEeCCcE
Q 016824 228 RLCFSVDNVRVLQIKRLKW--KFRGNERIDVDGVP 260 (382)
Q Consensus 228 ~L~VsVDgk~vlqVkRL~W--kFRGNetI~vdG~~ 260 (382)
.+.+.|||+.+++...-.. .+..+..|+|+|.|
T Consensus 93 ~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~iGg~~ 127 (151)
T cd00110 93 SVTLSVDGERVVESGSPGGSALLNLDGPLYLGGLP 127 (151)
T ss_pred EEEEEECCccEEeeeCCCCceeecCCCCeEEcCCC
Confidence 5999999997777655444 36777788888875
No 4
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=71.50 E-value=11 Score=33.28 Aligned_cols=71 Identities=27% Similarity=0.350 Sum_probs=46.2
Q ss_pred cccEEEEEECceE--EEEecCcchHHHHHhhcCCCCCCCCCeeeEEeeEEEeeeceEEeeEEECCc---cceEEEEeCCC
Q 016824 150 SGFYIAVVVDGEM--SLLVGDCIKEAYAKTKAQKPERSQAPQALVLRREHVFGNKVYTTKAKFGGK---TRDVSIDCSTS 224 (382)
Q Consensus 150 sgfYVAVV~d~Ev--vLlLGDl~kea~~ktk~~~~~~~~~~a~LvsRREhV~G~~~y~TkA~F~G~---~HeI~Iec~~~ 224 (382)
.|-+.|||-|.+- ||.||=|.+||++||.... .+...||.-+ ..=+|..=.|. .+||.++|++.
T Consensus 16 ~gLvpaIvQd~~t~eVLMlaymN~eAl~kTleTg------~~~y~SRSR~-----~lW~KGetSG~~q~v~~i~~DCD~D 84 (111)
T COG0139 16 DGLVPAIVQDAETGEVLMLAYMNEEALAKTLETG------EAHYYSRSRQ-----ELWTKGETSGHTQKVVEIRLDCDGD 84 (111)
T ss_pred CCeEEEEEEecCCCcEEEEEecCHHHHHHHHhcC------eEEEEEcchh-----hheccccccCceEEEEEEEcCCCCC
Confidence 7889999987654 7999999999999987632 4555555321 11222222232 58899999754
Q ss_pred CCccEEEEEc
Q 016824 225 NDARLCFSVD 234 (382)
Q Consensus 225 ~d~~L~VsVD 234 (382)
. |.|.|+
T Consensus 85 a---ll~~V~ 91 (111)
T COG0139 85 A---LLLLVE 91 (111)
T ss_pred E---EEEEEE
Confidence 3 666554
No 5
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=69.43 E-value=13 Score=33.30 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=43.6
Q ss_pred cccEEEEEEC--ceEEEEecCcchHHHHHhhcCCCCCCCCCeeeEEee-EEEeeeceEEeeEEECC---ccceEEEEeCC
Q 016824 150 SGFYIAVVVD--GEMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLRR-EHVFGNKVYTTKAKFGG---KTRDVSIDCST 223 (382)
Q Consensus 150 sgfYVAVV~d--~EvvLlLGDl~kea~~ktk~~~~~~~~~~a~LvsRR-EhV~G~~~y~TkA~F~G---~~HeI~Iec~~ 223 (382)
.|-.-|||-| ..-||+||=|.+||+++|.... .+...||. ..+.-| -.=.| +..+|.++|++
T Consensus 12 ~GLipaivqd~~tg~VLMlaymn~eAl~~Tl~tg------~~~y~SRSR~~lW~K------GetSG~~q~v~~i~~DCD~ 79 (125)
T PRK00051 12 DGLVPAIAQDAETGEVLMVAWMNEEALAKTLETG------RAHYWSRSRQKLWRK------GETSGHVQKVHEVRLDCDG 79 (125)
T ss_pred CCcEEEEEEECCCCCEEEEEEcCHHHHHHHHhcC------cEEEEeCccCcccCC------CCCcCCeEEEEEEEecCCC
Confidence 4778888887 5578999999999999987632 45555552 222111 00112 24689999975
Q ss_pred CCCccEEEEE
Q 016824 224 SNDARLCFSV 233 (382)
Q Consensus 224 ~~d~~L~VsV 233 (382)
.. |.|.|
T Consensus 80 D~---Ll~~V 86 (125)
T PRK00051 80 DA---VLLKV 86 (125)
T ss_pred CE---EEEEE
Confidence 44 55555
No 6
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=61.10 E-value=20 Score=28.65 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=36.3
Q ss_pred CCccceEEEEeCCCCCccEEEEEcCEEEEEEeecccc--c-ccceeEEeCCcE
Q 016824 211 GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKWK--F-RGNERIDVDGVP 260 (382)
Q Consensus 211 ~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~Wk--F-RGNetI~vdG~~ 260 (382)
.|+.|.|.|..... ++.+.||+....+....... . -....|+|+|.+
T Consensus 53 dg~wh~v~i~~~~~---~~~l~Vd~~~~~~~~~~~~~~~~~~~~~~l~iGg~~ 102 (128)
T PF02210_consen 53 DGQWHKVSISRDGN---RVTLTVDGQSVSSESLPSSSSDSLDPDGSLYIGGLP 102 (128)
T ss_dssp SSSEEEEEEEEETT---EEEEEETTSEEEEEESSSTTHHCBESEEEEEESSTT
T ss_pred ccceeEEEEEEeee---eEEEEecCccceEEeccccceecccCCCCEEEeccc
Confidence 59999999998544 49999999999998888775 3 334447777764
No 7
>smart00282 LamG Laminin G domain.
Probab=60.59 E-value=18 Score=30.12 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=30.9
Q ss_pred EEE-CCccceEEEEeCCCCCccEEEEEcCEEEEEEeeccc--ccccceeEEeCCcE
Q 016824 208 AKF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKW--KFRGNERIDVDGVP 260 (382)
Q Consensus 208 A~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~W--kFRGNetI~vdG~~ 260 (382)
.++ .|+.|.|.|+... ..+.+.|||+....++...= .+--+..|+|+|.|
T Consensus 57 ~~~~dg~WH~v~i~~~~---~~~~l~VD~~~~~~~~~~~~~~~l~~~~~l~iGG~p 109 (135)
T smart00282 57 TPLNDGQWHRVAVERNG---RRVTLSVDGENPVSGESPGGLTILNLDGPLYLGGLP 109 (135)
T ss_pred eEeCCCCEEEEEEEEeC---CEEEEEECCCccccEECCCCceEEecCCCcEEccCC
Confidence 456 5999999999864 45999999976554332210 00112346666665
No 8
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=54.12 E-value=48 Score=26.75 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=36.1
Q ss_pred eeEEECCccceEEEEeCCCCCccEEEEEcCEEEEEEeecccccccceeEEe-CCcEEEEEEEc---cccccc
Q 016824 206 TKAKFGGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKWKFRGNERIDV-DGVPVQISWDV---YNWLFD 273 (382)
Q Consensus 206 TkA~F~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~WkFRGNetI~v-dG~~V~V~WDV---HdWlF~ 273 (382)
.++++......|.|.+.+.+...+. ++|....-.-.+.+++.| .|..+++.|++ |+|+.=
T Consensus 11 v~~~~~~~~g~l~l~l~N~g~~~~~--------~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl 74 (89)
T PF05506_consen 11 VTARYDPATGNLRLTLSNPGSAAVT--------FTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAASGGWYDL 74 (89)
T ss_pred EEEEEECCCCEEEEEEEeCCCCcEE--------EEEEeCCcCCCCCEEEEECCCCEEEEEEeecCCCCcEEE
Confidence 3444444444566666544433333 344433333356788887 56899999998 999873
No 9
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=42.90 E-value=32 Score=31.46 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=36.6
Q ss_pred CCccceEEEEeC--CCCCccEEEEEcCEEEEEEeecccccccceeEEeCCcEEEEEEEccc
Q 016824 211 GGKTRDVSIDCS--TSNDARLCFSVDNVRVLQIKRLKWKFRGNERIDVDGVPVQISWDVYN 269 (382)
Q Consensus 211 ~G~~HeI~Iec~--~~~d~~L~VsVDgk~vlqVkRL~WkFRGNetI~vdG~~V~V~WDVHd 269 (382)
.|+.|+|+|+.. ...+..|.|.+|||.|+.. +| .++.-+.....+=|=++-
T Consensus 151 ~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~-------~g-~~~~~~~~~~y~K~GiYr 203 (224)
T PF14099_consen 151 RGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDY-------KG-PTGYNDDRGPYFKFGIYR 203 (224)
T ss_dssp TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEE-------EE-EECECCSSEEEEEEEEEE
T ss_pred CCcEEEEEEEEEECCCCCEEEEEEECCEEEEEE-------eC-CceeCCCCcceeEEEEEC
Confidence 399999999975 4477899999999998875 45 454444455555555553
No 10
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=42.81 E-value=37 Score=29.62 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=28.1
Q ss_pred CCccceEEEEeCCCCCccEEEEEcCEEEEEEeecccc
Q 016824 211 GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKWK 247 (382)
Q Consensus 211 ~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~Wk 247 (382)
.|+.|.|.|+|.+ ..+.|.|||+.|+......=.
T Consensus 126 ~~~W~~~~I~~~g---~~i~v~vnG~~v~~~~d~~~~ 159 (185)
T PF06439_consen 126 PGEWNTVRIVVKG---NRITVWVNGKPVADFTDPSFP 159 (185)
T ss_dssp TTSEEEEEEEEET---TEEEEEETTEEEEEEETTSHH
T ss_pred CCceEEEEEEEEC---CEEEEEECCEEEEEEEcCCCC
Confidence 5899999999954 449999999999998876544
No 11
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=40.63 E-value=73 Score=30.77 Aligned_cols=70 Identities=24% Similarity=0.392 Sum_probs=43.5
Q ss_pred cccEEEEEEC--ceEEEEecCcchHHHHHhhcCCCCCCCCCeeeEEee-EEEeeeceEEeeEEECC---ccceEEEEeCC
Q 016824 150 SGFYIAVVVD--GEMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLRR-EHVFGNKVYTTKAKFGG---KTRDVSIDCST 223 (382)
Q Consensus 150 sgfYVAVV~d--~EvvLlLGDl~kea~~ktk~~~~~~~~~~a~LvsRR-EhV~G~~~y~TkA~F~G---~~HeI~Iec~~ 223 (382)
.|-.-|||-| .--||+||=|.+||+++|.... .+...||. ..+.-| -.=.| +..+|.++|++
T Consensus 14 ~gLip~ivqd~~tg~vLml~ymn~eal~~Tl~tg------~~~~~SRSr~~lW~K------GetSG~~q~v~~i~~DCD~ 81 (203)
T PRK02759 14 DGLIPAIVQDALTGEVLMLGYMNREALEKTLETG------EVTFFSRSKQRLWTK------GETSGNTQKVVSIRLDCDN 81 (203)
T ss_pred CCcEEEEEEECCCCCEEEEEecCHHHHHHHHhcC------cEEEEeCCCCcccCC------CCCCCCeEEEEEEEecCCC
Confidence 3677788876 3457999999999999987633 45666652 222111 11112 24689999975
Q ss_pred CCCccEEEEEc
Q 016824 224 SNDARLCFSVD 234 (382)
Q Consensus 224 ~~d~~L~VsVD 234 (382)
.. |.|.|+
T Consensus 82 D~---ll~~V~ 89 (203)
T PRK02759 82 DT---LLVLVE 89 (203)
T ss_pred Ce---EEEEEE
Confidence 44 555444
No 12
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=36.16 E-value=54 Score=29.93 Aligned_cols=12 Identities=25% Similarity=0.204 Sum_probs=9.6
Q ss_pred EEEEEcCEEEEE
Q 016824 229 LCFSVDNVRVLQ 240 (382)
Q Consensus 229 L~VsVDgk~vlq 240 (382)
-||+|||+.|.+
T Consensus 117 ~~iKVdge~Vy~ 128 (137)
T PF12101_consen 117 KWIKVDGELVYK 128 (137)
T ss_pred EEEEECCEEEec
Confidence 478888888876
No 13
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=34.62 E-value=1.7e+02 Score=27.60 Aligned_cols=44 Identities=18% Similarity=0.562 Sum_probs=28.8
Q ss_pred CCccceEEEEeCCCCCccEEEEEcCEEEEEEeecccccc--cceeEEeCC
Q 016824 211 GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKWKFR--GNERIDVDG 258 (382)
Q Consensus 211 ~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~WkFR--GNetI~vdG 258 (382)
.+..|+|.+|=++-. ...-|+||||.+++ | .|.|+ |-++..|++
T Consensus 14 ~d~~h~IefeHgttt-GkrvI~VDGkei~r-~--~wmfklvg~e~F~ig~ 59 (177)
T PF06905_consen 14 SDGVHKIEFEHGTTT-GKRVIKVDGKEIVR-R--DWMFKLVGKETFTIGG 59 (177)
T ss_dssp TTEEEEEEEEE-TTT---EEEEETTEEEEE-E-----S---EEEEEEETT
T ss_pred CCCEEEEEEEeCCcc-CeEEEEECCcEEEE-e--cceeeeCcccEEEECC
Confidence 688999999975321 23889999998776 3 46665 777777773
No 14
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=31.77 E-value=62 Score=29.37 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=31.5
Q ss_pred EECCccceEEEEeCCCCCccEEEEEcCEEEEEEeecccccccceeEEeCCc
Q 016824 209 KFGGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKWKFRGNERIDVDGV 259 (382)
Q Consensus 209 ~F~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~WkFRGNetI~vdG~ 259 (382)
-+.|+.|-|.|...+. .+.+.||++.+-.+. |...+. +.+..+|.
T Consensus 114 l~dg~WH~lal~V~~~---~v~LyvDC~~~~~~~-l~~~~~--~~~~~~g~ 158 (184)
T smart00210 114 LADGQWHKLALSVSGS---SATLYVDCNEIDSRP-LDRPGQ--PPIDTDGI 158 (184)
T ss_pred cccCCceEEEEEEeCC---EEEEEECCcccccee-cCCccc--ccccccce
Confidence 3479999999998655 488999999876543 766554 44555554
No 15
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=28.67 E-value=1.2e+02 Score=25.69 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCccceEEEEeCCCCCccEEEEEcCEEEEEEeec-cc--ccccceeEEeCCcE
Q 016824 211 GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRL-KW--KFRGNERIDVDGVP 260 (382)
Q Consensus 211 ~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL-~W--kFRGNetI~vdG~~ 260 (382)
.|+.|.|.++-.. ....++||+..++...-- .= ...-+..|+|.|+|
T Consensus 52 dg~wh~v~~~r~~---~~~~L~Vd~~~~~~~~s~~~~~~~l~~~~~lyvGG~p 101 (131)
T PF00054_consen 52 DGKWHTVSVSRNG---RNGSLSVDGEEVVTGESPSGATQSLDVDGPLYVGGLP 101 (131)
T ss_dssp SSSEEEEEEEEET---TEEEEEETTSEEEEEEECSSSSSSCEECSEEEESSSS
T ss_pred CCcceEEEEEEcC---cEEEEEECCccceeeecCCccccccccccCEEEccCC
Confidence 5999999998743 459999999998544332 11 12334449999988
No 16
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=27.44 E-value=4e+02 Score=22.94 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=22.1
Q ss_pred cEEEEEcCEEEEE-Ee--ecccccc--cceeEEeCCcEEEEEEEc
Q 016824 228 RLCFSVDNVRVLQ-IK--RLKWKFR--GNERIDVDGVPVQISWDV 267 (382)
Q Consensus 228 ~L~VsVDgk~vlq-Vk--RL~WkFR--GNetI~vdG~~V~V~WDV 267 (382)
.+.|.|||+.+-. .+ .....++ +...|..-...|+|+||-
T Consensus 82 ~~~v~vng~~v~~p~~~~~~~v~~~~~~~~~v~~~~~gl~v~~dg 126 (162)
T smart00216 82 NGTVTVNGQQVSLPYKTSDGSIQIRSSGGYVVVITSLGLQVTFDG 126 (162)
T ss_pred CCEEEECCEEeeCCcCcCCceEEEEECceEEEEECCCCEEEEECC
Confidence 5789999986321 00 1111112 444455566777888873
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=24.51 E-value=63 Score=35.03 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.6
Q ss_pred EeecccccccceeEEeCCcEEEEEEEcc
Q 016824 241 IKRLKWKFRGNERIDVDGVPVQISWDVY 268 (382)
Q Consensus 241 VkRL~WkFRGNetI~vdG~~V~V~WDVH 268 (382)
|-+|+|+=+||..+--+-..+-|+||+|
T Consensus 279 I~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 279 IFSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred eEEEEEcCCCCEEEeccCCccEEEEecc
Confidence 5689999999998876666788999995
No 18
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=23.34 E-value=74 Score=27.20 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=16.4
Q ss_pred EEEeCCCCCccEEEEEcCEEEEEEe
Q 016824 218 SIDCSTSNDARLCFSVDNVRVLQIK 242 (382)
Q Consensus 218 ~Iec~~~~d~~L~VsVDgk~vlqVk 242 (382)
..+..+ |..|||-||||.|+-+-
T Consensus 21 ~F~F~G--DDDvWVFIn~kLv~DlG 43 (90)
T TIGR02148 21 YFEFRG--DDDVWVFINNKLVVDIG 43 (90)
T ss_pred EEEEEc--CCeEEEEECCEEEEEcc
Confidence 344444 44599999999988754
No 19
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=23.20 E-value=1.5e+02 Score=29.83 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=41.9
Q ss_pred ccEEEEEEC--ceEEEEecCcchHHHHHhhcCCCCCCCCCeeeEEeeEEEeeeceEEeeEEECC---ccceEEEEeCCCC
Q 016824 151 GFYIAVVVD--GEMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLRREHVFGNKVYTTKAKFGG---KTRDVSIDCSTSN 225 (382)
Q Consensus 151 gfYVAVV~d--~EvvLlLGDl~kea~~ktk~~~~~~~~~~a~LvsRREhV~G~~~y~TkA~F~G---~~HeI~Iec~~~~ 225 (382)
|---|||.| ..-||+||=|.+||+.+|.... .+...||.=+- .=+|-.=.| +.++|.++|++..
T Consensus 53 gLipaivQd~~tg~VLml~ymn~eal~~Tl~tg------~~~y~SRSR~~-----LW~KGetSG~~q~v~~i~~DCD~D~ 121 (271)
T PLN02346 53 GLAVAIAQNVDTGAILMQGFANREAISATISSR------KATFYSRSRSG-----LWTKGETSGNFINVHDIYLDCDRDS 121 (271)
T ss_pred CCEEEEEEECCCCCEEEEEecCHHHHHHHHhcC------cEEEEeCCCCc-----cccCCCCcCCeEEEEEEEecCCCCe
Confidence 555566654 4578999999999999987632 35555553211 111111112 2578999997544
Q ss_pred CccEEEEEc
Q 016824 226 DARLCFSVD 234 (382)
Q Consensus 226 d~~L~VsVD 234 (382)
|.|.|+
T Consensus 122 ---ll~~V~ 127 (271)
T PLN02346 122 ---IIYLGT 127 (271)
T ss_pred ---EEEEEE
Confidence 555553
No 20
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=23.15 E-value=1.2e+02 Score=31.69 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=19.3
Q ss_pred EEEEcCEEEEEEe-eccccccccee
Q 016824 230 CFSVDNVRVLQIK-RLKWKFRGNER 253 (382)
Q Consensus 230 ~VsVDgk~vlqVk-RL~WkFRGNet 253 (382)
.|.=||..-+|+| |.+||-||+|-
T Consensus 274 sv~~dG~~~~h~k~r~~~n~RG~~Y 298 (376)
T KOG2463|consen 274 SVDEDGNGQTHFKKRFQWNNRGLQY 298 (376)
T ss_pred EecCCCceeEEeecccccccCccee
Confidence 3444566889998 99999999986
No 21
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=21.02 E-value=2.9e+02 Score=24.16 Aligned_cols=54 Identities=24% Similarity=0.566 Sum_probs=42.6
Q ss_pred CCccEEEEEcCEEEEEEeecccccccce------eEEeCC---cEEEEEEEcccccccCCCCCCCCCCcceEEEEEecC
Q 016824 225 NDARLCFSVDNVRVLQIKRLKWKFRGNE------RIDVDG---VPVQISWDVYNWLFDDFKSNKNDGNGHAVFMFRFED 294 (382)
Q Consensus 225 ~d~~L~VsVDgk~vlqVkRL~WkFRGNe------tI~vdG---~~V~V~WDVHdWlF~~~~s~~~~~~g~AVFmFr~~~ 294 (382)
.|..-.+++|.+.|-| =.||=-+|| +|.+|. +.|+|+|- || .+ =+||=.+|.++
T Consensus 9 ~eV~avLklDn~~Vgq---T~Wk~~s~q~WDQ~Fti~LdRsRELEI~Vywr--D~---Rs--------lCav~~lrLEd 71 (98)
T cd08687 9 SEVSAVLKLDNTVVGQ---TQWKPKSNQAWDQSFTLELERSRELEIAVYWR--DW---RS--------LCAVKFLKLED 71 (98)
T ss_pred cceEEEEEEcCeEEee---ccccccccccccceeEEEeecccEEEEEEEEe--cc---hh--------hhhheeeEhhh
Confidence 4566778999998877 578888877 477887 68999997 88 21 38999999987
Done!