Query 016824
Match_columns 382
No_of_seqs 117 out of 138
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gne_A Val-1; alginate lyase, 73.7 2.8 9.7E-05 40.0 4.3 53 209-264 159-220 (252)
2 1pz7_A Agrin; structural prote 67.2 24 0.00084 30.6 8.6 31 208-241 104-135 (204)
3 1d2s_A SHBG, sex hormone-bindi 64.6 8.3 0.00028 32.9 5.0 78 149-260 51-129 (170)
4 2jd4_A Laminin subunit alpha-1 64.4 17 0.0006 34.2 7.6 58 150-241 69-129 (383)
5 1f5f_A SHBG, sex hormone-bindi 59.9 12 0.00042 32.6 5.3 80 149-260 63-147 (205)
6 3v64_A Low-density lipoprotein 59.7 33 0.0011 29.5 8.0 30 208-240 91-121 (191)
7 1h30_A GAS6, growth-arrest-spe 56.5 64 0.0022 31.1 10.2 52 207-261 115-172 (422)
8 1dyk_A Laminin alpha 2 chain; 51.8 57 0.0019 31.0 8.9 58 150-241 83-143 (394)
9 3sh4_A LG3 peptide; actin disa 50.9 21 0.00072 30.9 5.3 50 208-260 90-142 (195)
10 3bod_A Neurexin-1-alpha; neure 46.3 17 0.0006 31.0 3.9 50 209-261 87-140 (178)
11 2zzj_A Glucuronan lyase A; bet 46.1 45 0.0015 31.5 7.0 41 202-242 138-181 (238)
12 3zr5_A Galactocerebrosidase; h 45.2 47 0.0016 35.2 7.7 33 211-246 597-629 (656)
13 3asi_A Neurexin-1-alpha; beta- 39.6 39 0.0013 32.3 5.6 51 209-261 83-134 (410)
14 4b1m_A Levanase; hydrolase, CB 38.9 28 0.00097 30.3 4.2 30 211-243 130-159 (185)
15 1dyk_A Laminin alpha 2 chain; 37.4 38 0.0013 32.2 5.1 48 211-261 294-343 (394)
16 3pve_A Agrin, AGRN protein; mR 35.3 32 0.0011 29.5 3.9 49 209-260 92-143 (189)
17 3mx7_A FAS apoptotic inhibitor 34.9 1.7E+02 0.0058 23.8 7.8 45 210-258 12-58 (90)
18 1p9k_A ORF, hypothetical prote 34.0 19 0.00066 27.3 2.0 30 231-263 48-77 (79)
19 2r16_A Neurexin-1-alpha; beta- 33.2 1.2E+02 0.0041 25.8 7.2 59 149-241 52-113 (182)
20 2jd4_A Laminin subunit alpha-1 32.9 54 0.0019 30.8 5.4 47 211-260 282-330 (383)
21 2h0b_A Neurexin-1-alpha; B-san 29.7 56 0.0019 27.6 4.5 49 209-260 85-136 (184)
22 2r1b_A Neurexin-1-beta, neurex 27.9 37 0.0013 30.3 3.1 29 209-240 93-122 (220)
23 2cua_A Protein (CUA); CUA cent 27.5 1.3E+02 0.0045 25.1 6.3 46 229-274 38-87 (135)
24 3asi_A Neurexin-1-alpha; beta- 27.3 46 0.0016 31.8 3.8 50 208-260 306-359 (410)
25 2k54_A Protein ATU0742; protei 26.6 1.2E+02 0.004 23.3 5.5 12 260-271 108-119 (123)
26 1zps_A PRA-CH, phosphoribosyl- 26.6 55 0.0019 28.7 3.8 70 150-234 21-96 (138)
27 1a78_A Galectin-1; S-lectin, c 25.0 1E+02 0.0035 25.6 5.2 49 209-263 79-128 (134)
28 2zhn_A Galectin-9; beta sandwi 24.4 1.7E+02 0.0058 24.7 6.5 45 211-259 95-139 (148)
29 2wjs_A Laminin subunit alpha-2 24.4 4.1E+02 0.014 26.7 10.3 25 208-235 280-305 (608)
30 2r1d_A Neurexin-1-beta, neurex 23.4 64 0.0022 29.0 3.8 49 209-260 121-173 (226)
31 4azz_A Levanase; hydrolase; 1. 28.6 18 0.0006 30.6 0.0 30 211-243 109-138 (172)
32 1iby_A Nitrosocyanin; RED copp 22.4 1.6E+02 0.0054 22.9 5.5 43 232-274 19-66 (112)
No 1
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=73.74 E-value=2.8 Score=39.95 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=41.5
Q ss_pred EE-CCccceEEEEeC--C------CCCccEEEEEcCEEEEEEeecccccccceeEEeCCcEEEEE
Q 016824 209 KF-GGKTRDVSIDCS--T------SNDARLCFSVDNVRVLQIKRLKWKFRGNERIDVDGVPVQIS 264 (382)
Q Consensus 209 ~F-~G~~HeI~Iec~--~------~~d~~L~VsVDgk~vlqVkRL~WkFRGNetI~vdG~~V~V~ 264 (382)
+| .|+.+.|.+.+. + ..|.++.|.|||+.|+ +..|+|. .+..+.|+|+..+.|
T Consensus 159 ~f~~G~W~~V~q~VkLNT~~~G~g~aDG~v~v~VNG~~v~-~~~i~~r--~~~~~~I~gi~fsTF 220 (252)
T 3gne_A 159 ALKYDVWNRIEIGTKMNTFKNGIPQLDGESYVIVNGKKEV-LKRINWS--RSPDLLISRFDWNTF 220 (252)
T ss_dssp CSCBTSCEEEEEEEECCCEETTEECSCEEEEEEETTEEEE-EEEECCC--SSTTCCEEEEEEEEE
T ss_pred eEcCCceEEEEEEEEcCCCCCCCccCCceEEEEECCEEEE-ECCEEEE--ecCCccEeEEEEEEE
Confidence 45 599888888864 3 3578999999999997 7888885 666677888877765
No 2
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=67.17 E-value=24 Score=30.58 Aligned_cols=31 Identities=6% Similarity=-0.078 Sum_probs=23.3
Q ss_pred EEE-CCccceEEEEeCCCCCccEEEEEcCEEEEEE
Q 016824 208 AKF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQI 241 (382)
Q Consensus 208 A~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqV 241 (382)
.++ .|+.|.|.|+-.+ ..+.+.||+......
T Consensus 104 ~~lnDg~WH~V~v~r~~---~~~~L~VD~~~~~~~ 135 (204)
T 1pz7_A 104 VPINTNHWTHIKAYRVQ---REGSLQVGNEAPITG 135 (204)
T ss_dssp EECCSSSCEEEEEEEET---TEEEEEETTSCCEEE
T ss_pred cccCCCCeEEEEEEEeC---CEEEEEECCcceEEE
Confidence 346 6999999998854 348899999865543
No 3
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=64.56 E-value=8.3 Score=32.94 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=50.8
Q ss_pred CcccEEEEEECceEEEEecCcchHHHHHhhcCCCCCCCCCeeeEEeeEEEeeeceEEeeEEE-CCccceEEEEeCCCCCc
Q 016824 149 QSGFYIAVVVDGEMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLRREHVFGNKVYTTKAKF-GGKTRDVSIDCSTSNDA 227 (382)
Q Consensus 149 ~sgfYVAVV~d~EvvLlLGDl~kea~~ktk~~~~~~~~~~a~LvsRREhV~G~~~y~TkA~F-~G~~HeI~Iec~~~~d~ 227 (382)
..+|...-+.||.+.|.+.- .. ..+.+ .+..++ .|+.|.|.|+-.+ .
T Consensus 51 ~~df~~l~L~~G~l~~~~~~-g~----------------~~~~~------------~s~~~vnDG~WH~V~v~~~~---~ 98 (170)
T 1d2s_A 51 KDDWFMLGLRDGRPEIQLHN-HW----------------AQLTV------------GAGPRLDDGRWHQVEVKMEG---D 98 (170)
T ss_dssp TTEEEEEEEETTEEEEEEES-SS----------------CEEEE------------ECSCCCCSSSCEEEEEEEET---T
T ss_pred CCCEEEEEEeCCEEEEEEEC-CC----------------ceEEE------------eCCCccCCCCCEEEEEEEeC---C
Confidence 35788878889999887631 10 11111 122346 5999999999853 4
Q ss_pred cEEEEEcCEEEEEEeecccccccceeEEeCCcE
Q 016824 228 RLCFSVDNVRVLQIKRLKWKFRGNERIDVDGVP 260 (382)
Q Consensus 228 ~L~VsVDgk~vlqVkRL~WkFRGNetI~vdG~~ 260 (382)
.+.+.|||..+..+..+.- .- ...|+|+|+|
T Consensus 99 ~~~L~VD~~~~~~~~~~~~-l~-~~~lylGG~p 129 (170)
T 1d2s_A 99 SVLLEVDGEEVLRLRQVSG-HP-IMRIALGGLL 129 (170)
T ss_dssp EEEEEETTEEEEEETTCCC-CC-EEEEEESSCS
T ss_pred EEEEEECCeeeeeeccCCC-cc-cccEEEECcc
Confidence 5999999999887765432 10 2458888876
No 4
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=64.42 E-value=17 Score=34.23 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=37.5
Q ss_pred cccEEEEEECceEEEEe--cCcchHHHHHhhcCCCCCCCCCeeeEEeeEEEeeeceEEeeEEE-CCccceEEEEeCCCCC
Q 016824 150 SGFYIAVVVDGEMSLLV--GDCIKEAYAKTKAQKPERSQAPQALVLRREHVFGNKVYTTKAKF-GGKTRDVSIDCSTSND 226 (382)
Q Consensus 150 sgfYVAVV~d~EvvLlL--GDl~kea~~ktk~~~~~~~~~~a~LvsRREhV~G~~~y~TkA~F-~G~~HeI~Iec~~~~d 226 (382)
.+|+..-+.||.+.|.+ |+.. ..+. +..++ .|+.|.|.|+-.+.
T Consensus 69 ~d~~~l~L~~G~l~~~~~~g~~~------------------~~~~-------------~~~~~~Dg~WH~V~v~r~~~-- 115 (383)
T 2jd4_A 69 MDYATLQLQEGRLHFMFDLGKGR------------------TKVS-------------HPALLSDGKWHTVKTEYIKR-- 115 (383)
T ss_dssp SSEEEEEEETTEEEEEEECSSCE------------------EEEE-------------CCCCCTTSSCEEEEEEEETT--
T ss_pred CcEEEEEEECCEEEEEEECCCCe------------------EEEe-------------CcceecCCCcEEEEEEEeCC--
Confidence 56777777899998875 5521 1111 11235 58899999987543
Q ss_pred ccEEEEEcCEEEEEE
Q 016824 227 ARLCFSVDNVRVLQI 241 (382)
Q Consensus 227 ~~L~VsVDgk~vlqV 241 (382)
.+.+.|||+.....
T Consensus 116 -~~~L~VD~~~~~~~ 129 (383)
T 2jd4_A 116 -KAFMTVDGQESPSV 129 (383)
T ss_dssp -EEEEEETTEECCCE
T ss_pred -EEEEEEcCccccce
Confidence 48888888776543
No 5
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=59.93 E-value=12 Score=32.60 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=50.9
Q ss_pred CcccEEEEEECceEEEEecCcchHHHHHhhcCCCCCCCCCeeeEEeeEEEeeeceEEeeEEE-CCccceEEEEeCCCCCc
Q 016824 149 QSGFYIAVVVDGEMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLRREHVFGNKVYTTKAKF-GGKTRDVSIDCSTSNDA 227 (382)
Q Consensus 149 ~sgfYVAVV~d~EvvLlLGDl~kea~~ktk~~~~~~~~~~a~LvsRREhV~G~~~y~TkA~F-~G~~HeI~Iec~~~~d~ 227 (382)
-.+|...-+.||.+.|.+--.. ..+.+ .+..++ .|+.|.|.|+-.. .
T Consensus 63 ~~d~~~l~L~~G~l~~~~~~g~-----------------~~~~~------------~s~~~vnDG~WH~V~v~r~~---~ 110 (205)
T 1f5f_A 63 KDDWFMLGLRDGRPEIQLHNHW-----------------AQLTV------------GAGPRLDDGRWHQVEVKMEG---D 110 (205)
T ss_dssp TTEEEEEEEETTEEEEEEESSS-----------------CEEEE------------ECSCCCCSSSCEEEEEEEET---T
T ss_pred CCCEEEEEEECCEEEEEEECCC-----------------ceEEE------------ecCCccCCCCCEEEEEEEeC---C
Confidence 3578887788999888764211 11111 123346 5999999999854 4
Q ss_pred cEEEEEcCEEEEEEeecc-c--cccc-ceeEEeCCcE
Q 016824 228 RLCFSVDNVRVLQIKRLK-W--KFRG-NERIDVDGVP 260 (382)
Q Consensus 228 ~L~VsVDgk~vlqVkRL~-W--kFRG-NetI~vdG~~ 260 (382)
.+.+.|||..+..+.++. - ++-. +..|+|.|+|
T Consensus 111 ~~~L~VD~~~~~~~~~~~~~~~~~~~~~~~lyiGG~p 147 (205)
T 1f5f_A 111 SVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLL 147 (205)
T ss_dssp EEEEEETTEEEEEECSCCCCC----CCEEEEEESSCS
T ss_pred EEEEEECCeeeeeeeccCCCcccccCCCceEEEeCcc
Confidence 599999999988775432 1 1122 2458888876
No 6
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=59.66 E-value=33 Score=29.54 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=23.0
Q ss_pred EEE-CCccceEEEEeCCCCCccEEEEEcCEEEEE
Q 016824 208 AKF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQ 240 (382)
Q Consensus 208 A~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlq 240 (382)
.++ .|+.|.|.|+-.+ ..+.+.|||.....
T Consensus 91 ~~v~Dg~WH~V~v~r~~---~~~~L~VD~~~~~~ 121 (191)
T 3v64_A 91 VKVNTNRWLRIRAHREH---REGSLQVGNEAPVT 121 (191)
T ss_dssp EECTTSSCEEEEEEEET---TEEEEEETTSCCEE
T ss_pred ccccCCCCEEEEEEEeC---CEEEEEECCeeeEe
Confidence 356 6999999999753 45899999986544
No 7
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=56.52 E-value=64 Score=31.10 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=34.4
Q ss_pred eEEE-CCccceEEEEeCCCCCccEEEEEcCEEEEEEeec--cccc-cc--ceeEEeCCcEE
Q 016824 207 KAKF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRL--KWKF-RG--NERIDVDGVPV 261 (382)
Q Consensus 207 kA~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL--~WkF-RG--NetI~vdG~~V 261 (382)
..++ .|+.|.|.|+-.+ -.+.+.||+..+..+.-- .... +| +..|+|+|.|.
T Consensus 115 ~~~~nDg~WH~V~v~r~~---~~~~L~VD~~~~~~~~~~g~~~~l~~~~~~~~lyvGG~p~ 172 (422)
T 1h30_A 115 GPVINHGMWQTISVEELA---RNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPF 172 (422)
T ss_dssp EEECCSSCCEEEEEEECS---SEEEEEETTEEEEEEECCSCSSEEETTEEECEEEESSCSS
T ss_pred CceecCCCCEEEEEEEcC---CEEEEEECCeeeEEeecCCcccccccccccceEEEecCcc
Confidence 3356 6999999999854 459999999987765211 1111 22 45688888763
No 8
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=51.76 E-value=57 Score=31.01 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=38.5
Q ss_pred cccEEEEEECceEEEEe--cCcchHHHHHhhcCCCCCCCCCeeeEEeeEEEeeeceEEeeEEE-CCccceEEEEeCCCCC
Q 016824 150 SGFYIAVVVDGEMSLLV--GDCIKEAYAKTKAQKPERSQAPQALVLRREHVFGNKVYTTKAKF-GGKTRDVSIDCSTSND 226 (382)
Q Consensus 150 sgfYVAVV~d~EvvLlL--GDl~kea~~ktk~~~~~~~~~~a~LvsRREhV~G~~~y~TkA~F-~G~~HeI~Iec~~~~d 226 (382)
.+|...-+.||.+.|.+ |+.. ..+. +..++ .|+.|.|.|+-..
T Consensus 83 ~dfi~l~L~~G~l~~~~~~g~g~------------------~~~~-------------~~~~~~Dg~WH~V~v~r~~--- 128 (394)
T 1dyk_A 83 ADFATVQLRNGFPYFSYDLGSGD------------------TSTM-------------IPTKINDGQWHKIKIVRVK--- 128 (394)
T ss_dssp SSEEEEEEETTEEEEEEESSSCE------------------EEEE-------------CCSCCCSSSCEEEEEEEET---
T ss_pred CceEEEEEECCEEEEEEECCCCc------------------eEEE-------------cccccCCCCEEEEEEEEeC---
Confidence 56777777899988875 5411 1111 11235 5999999998854
Q ss_pred ccEEEEEcCEEEEEE
Q 016824 227 ARLCFSVDNVRVLQI 241 (382)
Q Consensus 227 ~~L~VsVDgk~vlqV 241 (382)
..+.+.|||+.+...
T Consensus 129 ~~~~L~VD~~~~~~~ 143 (394)
T 1dyk_A 129 QEGILYVDDASSQTI 143 (394)
T ss_dssp TEEEEEETTEEEEEE
T ss_pred CEEEEEEcCccccee
Confidence 348899999887654
No 9
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=50.95 E-value=21 Score=30.92 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=33.1
Q ss_pred EEE-CCccceEEEEeCCCCCccEEEEEcCEEEEEEeecc--cccccceeEEeCCcE
Q 016824 208 AKF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLK--WKFRGNERIDVDGVP 260 (382)
Q Consensus 208 A~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~--WkFRGNetI~vdG~~ 260 (382)
.++ .|+.|.|.|+-.+ ..+.+.|||..+....--. -.+.=+..|+|.|+|
T Consensus 90 ~~l~Dg~WH~V~v~r~~---~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p 142 (195)
T 3sh4_A 90 DPINDGEWHRVTALREG---RRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAP 142 (195)
T ss_dssp EECCSSSCEEEEEEEET---TEEEEEETTCCCEEEECCSSCCCCCCCSCEEESCCT
T ss_pred ceeCCCCeEEEEEEEeC---CEEEEEECCeeeeeeeCCCCcccccCCCCEEECCCC
Confidence 456 6999999998854 4589999998765433110 112223469999976
No 10
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=46.26 E-value=17 Score=31.00 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=33.5
Q ss_pred EE-CCccceEEEEeCCCCCccEEEEEcCEEEEEEeecccc---cccceeEEeCCcEE
Q 016824 209 KF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKWK---FRGNERIDVDGVPV 261 (382)
Q Consensus 209 ~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~Wk---FRGNetI~vdG~~V 261 (382)
.+ .|+.|.|.|+-.+ ..+.+.||+..........=. +--+..|+|+|.|.
T Consensus 87 ~vnDg~WH~V~v~r~~---~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 140 (178)
T 3bod_A 87 IINDGKYHVVRFTRSG---GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ 140 (178)
T ss_dssp CCCSSSCEEEEEEEET---TEEEEEETTSCCEEECCCSCCCCCBCCEEEEEESCCTT
T ss_pred CccCCCeEEEEEEEeC---CEEEEEEeCCceeeeecCCCcceEEeCCCcEEEecccC
Confidence 35 5999999999853 458999999876554322111 33344688888763
No 11
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=46.08 E-value=45 Score=31.47 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=32.5
Q ss_pred ceEEeeEEE-CCccceEEEEeC--CCCCccEEEEEcCEEEEEEe
Q 016824 202 KVYTTKAKF-GGKTRDVSIDCS--TSNDARLCFSVDNVRVLQIK 242 (382)
Q Consensus 202 ~~y~TkA~F-~G~~HeI~Iec~--~~~d~~L~VsVDgk~vlqVk 242 (382)
+.|...+.+ .|+.|+|+|... ..++.-+.|-+||++|+.-+
T Consensus 138 ~~~~~l~~v~~G~Wh~iVihvkWs~d~~Gf~~vW~dG~~v~~~~ 181 (238)
T 2zzj_A 138 VTRPNLATVSAGAWHRVVLQIKWASDNTGYFKIWFDGAKVHEEY 181 (238)
T ss_dssp EEEEEEEECCTTSCEEEEEEEEECSSTTEEEEEEETTEEEEEEE
T ss_pred eeccccccccCCceEEEEEEEEEeCCCCcEEEEEECCEEEEeec
Confidence 345556666 699999999974 45678899999999999943
No 12
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*
Probab=45.20 E-value=47 Score=35.20 Aligned_cols=33 Identities=6% Similarity=0.015 Sum_probs=27.7
Q ss_pred CCccceEEEEeCCCCCccEEEEEcCEEEEEEeeccc
Q 016824 211 GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKW 246 (382)
Q Consensus 211 ~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~W 246 (382)
.++.|.+.|+|.+.. +.+.|||+.++.+.--..
T Consensus 597 ~~~w~~L~l~~~G~~---i~~~ldG~~v~~~~D~~~ 629 (656)
T 3zr5_A 597 AKRWYTLTLGIKGYF---AFGMLNGTILWKNVRVKY 629 (656)
T ss_dssp TTCEEEEEEEEETTE---EEEEETTEEEEEEEECCS
T ss_pred CCceEEEEEEEECCE---EEEEECCEEEEEEecCCC
Confidence 488999999996554 999999999998877655
No 13
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=39.62 E-value=39 Score=32.35 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=34.0
Q ss_pred EE-CCccceEEEEeCCCCCccEEEEEcCEEEEEEeecccccccceeEEeCCcEE
Q 016824 209 KF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKWKFRGNERIDVDGVPV 261 (382)
Q Consensus 209 ~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~WkFRGNetI~vdG~~V 261 (382)
++ .|+.|.|.|+-...+ .+.+.||++.+.++..-.-.+.-+..++|+|+|-
T Consensus 83 ~vnDg~WH~V~v~r~~~~--~~~l~VD~~~~~~~~~~~~~l~~~~~lyvGG~p~ 134 (410)
T 3asi_A 83 PLNDNQWHNVMISRDTSN--LHTVKIDTKITTQITAGARNLDLKSDLYIGGVAK 134 (410)
T ss_dssp CSCSSSCEEEEEEECTTC--EEEEEETTEEEEEECTTCCCCCBCSCEEESCCCG
T ss_pred EeCCCCeEEEEEEEcCCc--eEEEEECCEeceeccCCccceecCCceEECcccc
Confidence 35 699999999985432 3789999998877632112223345688888764
No 14
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=38.95 E-value=28 Score=30.26 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.3
Q ss_pred CCccceEEEEeCCCCCccEEEEEcCEEEEEEee
Q 016824 211 GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKR 243 (382)
Q Consensus 211 ~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkR 243 (382)
.|+.+.|.|+|.+. .+.|.|||+.++.+.-
T Consensus 130 ~g~w~~l~I~~~G~---~i~~~vnG~~v~~~~D 159 (185)
T 4b1m_A 130 VNKKYHLKTEAEGD---RFKIYLDDRLVIDAHD 159 (185)
T ss_dssp SSCCEEEEEEEETT---EEEEEETTEEEEEEEC
T ss_pred CCCeEEEEEEEECC---EEEEEECCEEEEEEEC
Confidence 48999999999644 5999999999988764
No 15
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=37.43 E-value=38 Score=32.25 Aligned_cols=48 Identities=23% Similarity=0.180 Sum_probs=30.2
Q ss_pred CCccceEEEEeCCCCCccEEEEEcCEEEEEEeec--ccccccceeEEeCCcEE
Q 016824 211 GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRL--KWKFRGNERIDVDGVPV 261 (382)
Q Consensus 211 ~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL--~WkFRGNetI~vdG~~V 261 (382)
.|+.|.|.|.-.+ ..+.+.||+..+...... ...+.-+..|+|+|.|-
T Consensus 294 DG~WH~V~v~~~~---~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 343 (394)
T 1dyk_A 294 NGQWHKVTAKKIK---NRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG 343 (394)
T ss_dssp SSSCEEEEEEEET---TEEEEEETTEEEEEECCCTTCCCBCCCBCCEESCCCT
T ss_pred CCceEEEEEEEeC---CEEEEEECCcccccccCCCcceecccCCCEEEcCCCc
Confidence 4888888887743 348888999876543221 22344455688887753
No 16
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=35.31 E-value=32 Score=29.54 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=31.1
Q ss_pred EE-CCccceEEEEeCCCCCccEEEEEcCEEEEEEeec--ccccccceeEEeCCcE
Q 016824 209 KF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRL--KWKFRGNERIDVDGVP 260 (382)
Q Consensus 209 ~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL--~WkFRGNetI~vdG~~ 260 (382)
++ .|+.|.|.|+-.+ ..+.+.||+....+..-. .-.+.-+..|+|.|+|
T Consensus 92 ~l~Dg~WH~V~v~r~~---~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p 143 (189)
T 3pve_A 92 PIALGTWVRVFLERNG---RKGALQVGDGPRVLGESPVPHTMLNLKEPLYVGGAP 143 (189)
T ss_dssp CCCTTSEEEEEEEEET---TEEEEEETTSCCEEEECCSSCCCCCCCSCEEESCCS
T ss_pred ccCCCCEEEEEEEEeC---CEEEEEECCceeEeEEcCCCcceecCCCCEEECCcC
Confidence 45 5999999998753 458999999865443211 0111123458888876
No 17
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=34.90 E-value=1.7e+02 Score=23.83 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=29.3
Q ss_pred ECCccceEEEEeCCCCCccEEEEEcCEEEEEEeecccccc--cceeEEeCC
Q 016824 210 FGGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKWKFR--GNERIDVDG 258 (382)
Q Consensus 210 F~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~WkFR--GNetI~vdG 258 (382)
.+++.|.|..|=.+. ...=.|.|||+.+++ =.|-|+ |-|+..+++
T Consensus 12 l~~~~HkieFeHgtt-tGkrvi~VDGkev~r---~~wmfklvGke~F~ig~ 58 (90)
T 3mx7_A 12 LSDGVHKIEFEHGTT-SGKRVVYVDGKEEIR---KEWMFKLVGKETFYVGA 58 (90)
T ss_dssp ETTEEEEEEEEECTT-TCCEEEEETTEEEEE---ECCCSCCCEEEEEEETT
T ss_pred CCCCcEEEEEEeccc-cceEEEEECCEEEEe---cCCeEEEEeeEeEEECC
Confidence 378899999986432 223679999995554 334333 666666766
No 18
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=34.02 E-value=19 Score=27.27 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=16.1
Q ss_pred EEEcCEEEEEEeecccccccceeEEeCCcEEEE
Q 016824 231 FSVDNVRVLQIKRLKWKFRGNERIDVDGVPVQI 263 (382)
Q Consensus 231 VsVDgk~vlqVkRL~WkFRGNetI~vdG~~V~V 263 (382)
|+|||+.+ ++..-+...++.|.|+|.+++|
T Consensus 48 V~VNG~~v---~~~~~~v~~gd~I~v~~~~~~~ 77 (79)
T 1p9k_A 48 VKVDGAVE---TRKRCKIVAGQTVSFAGHSVQV 77 (79)
T ss_dssp HEETTBCC---CCSSCCCCSSEEEEETTEEEEE
T ss_pred EEECCEEe---cCCCCCCCCCCEEEECCEEEEE
Confidence 55566542 2334444555666666666554
No 19
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=33.20 E-value=1.2e+02 Score=25.78 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=40.3
Q ss_pred CcccEEEEEECceEEEEe--cCcchHHHHHhhcCCCCCCCCCeeeEEeeEEEeeeceEEeeEEE-CCccceEEEEeCCCC
Q 016824 149 QSGFYIAVVVDGEMSLLV--GDCIKEAYAKTKAQKPERSQAPQALVLRREHVFGNKVYTTKAKF-GGKTRDVSIDCSTSN 225 (382)
Q Consensus 149 ~sgfYVAVV~d~EvvLlL--GDl~kea~~ktk~~~~~~~~~~a~LvsRREhV~G~~~y~TkA~F-~G~~HeI~Iec~~~~ 225 (382)
..+|...-+.||.+.|.+ |+. ...+ .+...+ .|+.|.|.|+-.+
T Consensus 52 ~~d~l~L~L~~G~l~~~~~~G~~------------------~~~~-------------~~~~~lnDg~WH~V~v~r~~-- 98 (182)
T 2r16_A 52 SADTLRLELDAGRVKLTVNLGKG------------------PETL-------------FAGYNLNDNEWHTVRVVRRG-- 98 (182)
T ss_dssp SCCEEEEEEETTEEEEEEESSSC------------------CEEE-------------EECSSCCSSSCEEEEEEEET--
T ss_pred CCCEEEEEEECCEEEEEEECCCC------------------ceEE-------------EcCcccCCCCeEEEEEEEEC--
Confidence 456777777899998865 431 1111 123345 6999999999864
Q ss_pred CccEEEEEcCEEEEEE
Q 016824 226 DARLCFSVDNVRVLQI 241 (382)
Q Consensus 226 d~~L~VsVDgk~vlqV 241 (382)
..+.+.||+..+.+.
T Consensus 99 -~~~~L~VD~~~~~~~ 113 (182)
T 2r16_A 99 -KSLKLTVDDQQAMTG 113 (182)
T ss_dssp -TEEEEEETTCCEEEE
T ss_pred -CEEEEEECCceeEeE
Confidence 359999999987653
No 20
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=32.94 E-value=54 Score=30.81 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=27.7
Q ss_pred CCccceEEEEeCCCCCccEEEEEcCEEEEEEee-ccc-ccccceeEEeCCcE
Q 016824 211 GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKR-LKW-KFRGNERIDVDGVP 260 (382)
Q Consensus 211 ~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkR-L~W-kFRGNetI~vdG~~ 260 (382)
.|+.|.|.|+-.+ ..+.+.|||..+..... ... .+.-+..|+|+|.|
T Consensus 282 DG~WH~V~l~~~~---~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p 330 (383)
T 2jd4_A 282 DGKWHTLQAHKSK---HRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYP 330 (383)
T ss_dssp SSSCEEEEEEEET---TEEEEEETTEEEEEC----CCCCBCCCEEEEESCCC
T ss_pred CCCcEEEEEEEcC---CEEEEEECCeecccccCCCCcccccCCCCEEEeccc
Confidence 4888888887743 34888889887543211 111 23334457777765
No 21
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=29.74 E-value=56 Score=27.55 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=30.1
Q ss_pred EE-CCccceEEEEeCCCCCccEEEEEcCEEEEEEeec-ccc-cccceeEEeCCcE
Q 016824 209 KF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRL-KWK-FRGNERIDVDGVP 260 (382)
Q Consensus 209 ~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL-~Wk-FRGNetI~vdG~~ 260 (382)
.+ .|+.|.|.|+-.+ ..+.+.|||..+....-- ... .--+..++|.|.|
T Consensus 85 ~l~Dg~WH~V~v~r~~---~~~~L~VD~~~~~~~~~~~~~~~l~~~~~l~lGG~p 136 (184)
T 2h0b_A 85 KFNDNAWHDVKVTRNL---RQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSP 136 (184)
T ss_dssp CSSSSSCEEEEEEEET---TEEEEEETTTEEEEEECSTTCCCEEECSEEEESCCT
T ss_pred ccCCCCeEEEEEEEeC---CEEEEEEcCceeeeeECCCCceeccCCCCEEECCCC
Confidence 35 5999999999743 358999999876543210 011 0112357777764
No 22
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=27.85 E-value=37 Score=30.29 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=22.8
Q ss_pred EE-CCccceEEEEeCCCCCccEEEEEcCEEEEE
Q 016824 209 KF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQ 240 (382)
Q Consensus 209 ~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlq 240 (382)
.+ .|+.|.|.|+-.+ ..+.+.||+..+.+
T Consensus 93 ~vnDG~WH~V~v~r~~---~~~~L~VD~~~~~~ 122 (220)
T 2r1b_A 93 IINDGKYHVVRFTRSG---GNATLQVDSWPVIE 122 (220)
T ss_dssp CCCSSSCEEEEEEEET---TEEEEEETTSCCEE
T ss_pred EecCCceEEEEEEEeC---CEEEEEECCcceee
Confidence 35 5999999999854 45899999986654
No 23
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=27.49 E-value=1.3e+02 Score=25.14 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=35.7
Q ss_pred EEEEEcCEEEEEEeecccccccceeEEeCCcEEEEEE---Ec-ccccccC
Q 016824 229 LCFSVDNVRVLQIKRLKWKFRGNERIDVDGVPVQISW---DV-YNWLFDD 274 (382)
Q Consensus 229 L~VsVDgk~vlqVkRL~WkFRGNetI~vdG~~V~V~W---DV-HdWlF~~ 274 (382)
+.-..++...++|.--+|+|.-|+.+.=-|.+|.+.. || |+|....
T Consensus 38 ~~~~~~~~~~V~v~~~~~~f~P~~l~Vp~G~~V~~~vts~DV~Hsf~ip~ 87 (135)
T 2cua_A 38 VVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVEG 87 (135)
T ss_dssp EEEEETTEEEEEEEEETTEEESSSEEEETTSEEEEEEEBSSSCEEEEETT
T ss_pred cccCCCCCEEEEEEEEeCEEECCEEEEcCCCEEEEEEEeCCccceEEecC
Confidence 5555666777777777999999887777889999988 54 9998764
No 24
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=27.25 E-value=46 Score=31.82 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=32.0
Q ss_pred EEE-CCccceEEEEeCCCCCccEEEEEcCEEEEEEeec--ccc-cccceeEEeCCcE
Q 016824 208 AKF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRL--KWK-FRGNERIDVDGVP 260 (382)
Q Consensus 208 A~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL--~Wk-FRGNetI~vdG~~ 260 (382)
.++ .|+.|.|.|.-.+ ..+.+.||+..+....-. +.+ |..+..|+|+|.|
T Consensus 306 ~~l~DG~wH~V~v~r~~---~~~~L~VD~~~~~~~~~~g~~~~~~~~~~~lylGG~p 359 (410)
T 3asi_A 306 AIINDGKYHVVRFTRSG---GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 359 (410)
T ss_dssp CCCCSSSCEEEEEEEET---TEEEEEETTSCCEEECCSSCCCCCBCCEEEEEESSTT
T ss_pred cCcCCCCeEEEEEEEEC---CEEEEEECCcceecccCCCccceeeeccceEEECCcc
Confidence 345 5888998888753 348889999776554211 122 4455678888764
No 25
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=26.64 E-value=1.2e+02 Score=23.26 Aligned_cols=12 Identities=0% Similarity=-0.233 Sum_probs=8.2
Q ss_pred EEEEEEEccccc
Q 016824 260 PVQISWDVYNWL 271 (382)
Q Consensus 260 ~V~V~WDVHdWl 271 (382)
.+..+||..+|+
T Consensus 108 ~~~~~~d~~~~~ 119 (123)
T 2k54_A 108 KAWFKIGEPRIV 119 (123)
T ss_dssp EEEEEEEEEECG
T ss_pred EEEEEcCChhhh
Confidence 466777777776
No 26
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=26.57 E-value=55 Score=28.69 Aligned_cols=70 Identities=23% Similarity=0.346 Sum_probs=43.7
Q ss_pred cccEEEEEECc--eEEEEecCcchHHHHHhhcCCCCCCCCCeeeEEeeE-EEeeeceEEeeEEECC---ccceEEEEeCC
Q 016824 150 SGFYIAVVVDG--EMSLLVGDCIKEAYAKTKAQKPERSQAPQALVLRRE-HVFGNKVYTTKAKFGG---KTRDVSIDCST 223 (382)
Q Consensus 150 sgfYVAVV~d~--EvvLlLGDl~kea~~ktk~~~~~~~~~~a~LvsRRE-hV~G~~~y~TkA~F~G---~~HeI~Iec~~ 223 (382)
.|-.-|||-|. --||.||=|.+||+++|.... .+...||.= .+. .|..=.| +.++|.++|++
T Consensus 21 ~GLipaIvQd~~tg~VLMlayMN~EAl~~Tl~tg------~~~y~SRSR~~LW------~KGetSG~~Q~v~~i~~DCD~ 88 (138)
T 1zps_A 21 EDLIIAVAQDHETGEVLMVAYMNREALRRTLETG------TAHYWSTSRGKLW------LKGESSGHVQRVKDVLVDCDG 88 (138)
T ss_dssp CCCEEEEEEETTTCCEEEEEEECHHHHHHHHHHS------BCEEEETTTTEEE------ETTTTTSCCEEEEEEEECTTS
T ss_pred CCcEEEEEEECCCCCEEEEEecCHHHHHHHHhcC------cEEEEcCCCCccc------cCccCCCCcEEEEEEEecCCC
Confidence 57888888873 568999999999999987632 355555521 111 1111112 25789999964
Q ss_pred CCCccEEEEEc
Q 016824 224 SNDARLCFSVD 234 (382)
Q Consensus 224 ~~d~~L~VsVD 234 (382)
.. |.+.|+
T Consensus 89 D~---LL~~V~ 96 (138)
T 1zps_A 89 DA---VVLKVE 96 (138)
T ss_dssp SE---EEEEEE
T ss_pred CE---EEEEEE
Confidence 43 555444
No 27
>1a78_A Galectin-1; S-lectin, carbohydrate binding, complex (lectin/saccharide); HET: TDG; 2.00A {Bufo arenarum} SCOP: b.29.1.3 PDB: 1gan_A*
Probab=25.02 E-value=1e+02 Score=25.62 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=35.8
Q ss_pred EE-CCccceEEEEeCCCCCccEEEEEcCEEEEEEeecccccccceeEEeCCcEEEE
Q 016824 209 KF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKWKFRGNERIDVDGVPVQI 263 (382)
Q Consensus 209 ~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~WkFRGNetI~vdG~~V~V 263 (382)
-| .|+.-+|.|-|. +.+..|.|||+...+-+.-. ....=.+|.|+| |+|
T Consensus 79 PF~~G~~F~l~i~~~---~~~f~V~Vng~~~~~F~hR~-~~~~i~~l~I~G--v~l 128 (134)
T 1a78_A 79 PFQQGAEVMVCFEYQ---TQKIIIKFSSGDQFSFPVRK-VLPSIPFLSLEG--LAF 128 (134)
T ss_dssp CCCTTSEEEEEEEEC---SSEEEEEETTSCEEEEECSS-CCSSEEEEEEES--SEE
T ss_pred cccCCCcEEEEEEEc---CCEEEEEECCEEEEEecCCC-CHhhCCEEEEEe--EEE
Confidence 45 588899999994 55699999999988865422 345556688888 554
No 28
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Probab=24.38 E-value=1.7e+02 Score=24.65 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=35.1
Q ss_pred CCccceEEEEeCCCCCccEEEEEcCEEEEEEeecccccccceeEEeCCc
Q 016824 211 GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLKWKFRGNERIDVDGV 259 (382)
Q Consensus 211 ~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~WkFRGNetI~vdG~ 259 (382)
.|+.-+|.|-|. +.+..|.|||+.+.+-+.-- .+.-=.+|.|+|.
T Consensus 95 ~G~~F~l~i~~~---~~~f~V~vng~~~~~F~hR~-p~~~i~~l~i~Gd 139 (148)
T 2zhn_A 95 KGMPFDLCFLVQ---SSDFKVMVNGILFVQYFHRV-PFHRVDTISVNGS 139 (148)
T ss_dssp TTCEEEEEEEEC---SSEEEEEETTEEEEEEECSS-CGGGCCEEEEEES
T ss_pred CCCeEEEEEEEc---CCEEEEEECCcEEEEccCCC-ChhhcCEEEEECC
Confidence 488889999994 55699999999998876544 6666677888874
No 29
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=24.36 E-value=4.1e+02 Score=26.67 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=17.6
Q ss_pred EEE-CCccceEEEEeCCCCCccEEEEEcC
Q 016824 208 AKF-GGKTRDVSIDCSTSNDARLCFSVDN 235 (382)
Q Consensus 208 A~F-~G~~HeI~Iec~~~~d~~L~VsVDg 235 (382)
.++ .|+.|.|.|+-.. -.+.+.||+
T Consensus 280 ~~~nDg~WH~V~v~r~~---~~~~L~VD~ 305 (608)
T 2wjs_A 280 QNHNDGKWKAFTLSRIQ---KQANISIVD 305 (608)
T ss_dssp EECCSSSCEEEEEEEET---TEEEEEEEE
T ss_pred ccccCCceEEEEEEEec---ceEEEEEec
Confidence 345 5889998888743 347788876
No 30
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=23.39 E-value=64 Score=28.97 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=31.9
Q ss_pred EE-CCccceEEEEeCCCCCccEEEEEcCEEEEEEeecc---cccccceeEEeCCcE
Q 016824 209 KF-GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKRLK---WKFRGNERIDVDGVP 260 (382)
Q Consensus 209 ~F-~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkRL~---WkFRGNetI~vdG~~ 260 (382)
++ .|+.|.|.|+-.+ ..+.+.||+..+..-.... -.+.-+..|+|+|+|
T Consensus 121 ~vnDG~WH~V~v~r~~---~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p 173 (226)
T 2r1d_A 121 IINDGKYHVVRFTRSG---GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 173 (226)
T ss_dssp CCCSSSCEEEEEEEET---TEEEEEETTSCCEEECCSSCCCCCBCSEEEEEESSTT
T ss_pred EecCCCCEEEEEEEeC---CEEEEEEcCccceEEecCCCcceeccCCCeEEEcccc
Confidence 35 5999999998853 4589999998644321111 112234568888876
No 31
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Probab=28.62 E-value=18 Score=30.56 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=24.2
Q ss_pred CCccceEEEEeCCCCCccEEEEEcCEEEEEEee
Q 016824 211 GGKTRDVSIDCSTSNDARLCFSVDNVRVLQIKR 243 (382)
Q Consensus 211 ~G~~HeI~Iec~~~~d~~L~VsVDgk~vlqVkR 243 (382)
.|+.|.|.|+|.+.. +.+.|||+.++.++-
T Consensus 109 ~g~w~~l~I~~~G~~---i~~~vnG~~v~~~~D 138 (172)
T 4azz_A 109 VNKKYHLKTEAEGDR---FKIYLDDRLVIDAHD 138 (172)
Confidence 588999999996544 889999998887653
No 32
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=22.36 E-value=1.6e+02 Score=22.86 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=31.3
Q ss_pred EEcCEEEEEEeecccccccceeEEeCCcEEEEEEE-----cccccccC
Q 016824 232 SVDNVRVLQIKRLKWKFRGNERIDVDGVPVQISWD-----VYNWLFDD 274 (382)
Q Consensus 232 sVDgk~vlqVkRL~WkFRGNetI~vdG~~V~V~WD-----VHdWlF~~ 274 (382)
.++|..+..++.-+|.|-+++...=-|.+|.+.|. .|+|.+..
T Consensus 19 ~~~~v~~~~~~~~~~~f~p~~i~v~~G~~V~~~~~n~d~~~H~~~i~~ 66 (112)
T 1iby_A 19 NVEGVTVKNIRAFNVLNEPETLVVKKGDAVKVVVENKSPISEGFSIDA 66 (112)
T ss_dssp EETTEEEEEEEEEEEEEESCEEEEETTCEEEEEEEECSSSCEEEEEGG
T ss_pred EeccEEEEEEEEEeeEEcCCEEEEeCCCEEEEEEEECCCCeEEEEEcC
Confidence 45666666556778999988765557888988773 78887753
Done!