Query 016826
Match_columns 382
No_of_seqs 138 out of 492
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03124 EXS: EXS family; Int 100.0 1.1E-84 2.4E-89 646.9 25.7 331 16-353 2-345 (345)
2 KOG1162 Predicted small molecu 100.0 1.6E-77 3.5E-82 619.2 23.2 348 9-371 256-614 (617)
3 COG5409 EXS domain-containing 100.0 8.8E-61 1.9E-65 458.7 19.6 323 17-361 38-379 (384)
4 cd07347 harmonin_N_like N-term 24.5 61 0.0013 25.7 2.2 28 199-226 23-50 (78)
5 PF05545 FixQ: Cbb3-type cytoc 24.0 1.3E+02 0.0029 21.1 3.7 27 17-43 8-34 (49)
6 PF11753 DUF3310: Protein of u 21.4 52 0.0011 24.5 1.2 12 213-224 29-40 (60)
7 PF11120 DUF2636: Protein of u 21.1 2.1E+02 0.0045 21.7 4.3 34 100-133 9-42 (62)
8 KOG4116 Ubiquinol cytochrome c 19.6 64 0.0014 26.1 1.4 33 316-348 25-58 (90)
9 PF15269 zf-C2H2_7: Zinc-finge 16.3 44 0.00096 23.7 -0.2 15 211-225 31-45 (54)
10 PF11952 DUF3469: Protein of u 15.8 52 0.0011 26.5 0.1 21 145-165 34-54 (87)
No 1
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.1e-84 Score=646.92 Aligned_cols=331 Identities=41% Similarity=0.745 Sum_probs=290.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhCCCCeeEEEecCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccc----
Q 016826 16 FLYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQ-DHLTHREVWKCATWMTIIVPTSMTAYLYLYSHGEVS---- 90 (382)
Q Consensus 16 ~~~y~~~~l~~l~~~l~~~nl~vw~~~~INy~~IFe~~~-~~l~~~~~~~~a~~lt~i~~~s~~~~l~~~~~g~~~---- 90 (382)
+++||+++++++++|+||+|+++|+++||||++|||+|| ++++++++++.++.+++++++++..++.....+...
T Consensus 2 ~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 81 (345)
T PF03124_consen 2 PPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANW 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccch
Confidence 578999999999999999999999999999999999997 689999999999999988888877766544332221
Q ss_pred -hhhhhhHHHHHHHHHHHhhchhhhhhhHHHHHHHHHhHhh-cCcceeecchhhhhHhhhhHHHHhhccceeEEEeeccc
Q 016826 91 -LAASQPVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIV-LPLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQ 168 (382)
Q Consensus 91 -~~~~~Pl~l~~~~~~~l~~P~~i~~~~~R~~~~~~l~ril-~pf~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~~~~~~ 168 (382)
..+..|+++++++++++++|++++++++|+|++++++|++ +|+++|+|+|||+||||||++++++|+++++|++.++.
T Consensus 82 ~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~ 161 (345)
T PF03124_consen 82 YFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGS 161 (345)
T ss_pred hhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 1236899999999999999999999999999999999998 58999999999999999999999999999999998643
Q ss_pred ccccccccCCCCcCCccch-hhhHhhhhHHHHHHHHHHHhhcCCCc-chhhhHHHHHhhHHHHHHHHHhhhccCCCCccc
Q 016826 169 VATIAWFEADSVCGSHSVA-IPLVLVLPYLFRLFQCLRQYKDTREK-TALFNALKYSTAVPVIFLSALKYHVLPGSWTNF 246 (382)
Q Consensus 169 ~~~~~~~~~~~~c~~~~~~-~p~~~~lP~~iR~~QClrry~dt~~~-~hL~Na~KY~ss~~vi~~s~~~~~~~~~~~~~~ 246 (382)
. .++++.|++++.. .|+++++|++||++||+|||+||+++ +||.||+||++++++++++++.....++.+...
T Consensus 162 ~-----~~~~~~c~~~~~~~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~ 236 (345)
T PF03124_consen 162 F-----TSPSNQCGSSSWYIDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIW 236 (345)
T ss_pred c-----cCCCCcCccccHhHHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 2 1456789876654 49999999999999999999999999 999999999999999999988665443333334
Q ss_pred hhhHHHHHHHHHhHHHhhhhhhccCCCCccccccccCCCCcccccccCCcchhhhhhhhhhhhhhhhhhhcccc----cc
Q 016826 247 YRPLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLILRCTWTYKLSAH----LR 322 (382)
Q Consensus 247 ~~~~wi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR~~l~y~~~~~Yy~aiv~n~ilRf~W~~~l~~~----~~ 322 (382)
.+.+|++++++||+||++|||+|||||++.+ .+.+++.||++++||+|++||+||+.|+++||+|++++++. ..
T Consensus 237 ~~~~w~~~~~i~s~Ys~~WDv~~DWgL~~~~--~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~ 314 (345)
T PF03124_consen 237 LFILWIIFALINSLYSFYWDVKMDWGLFQPK--KKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHID 314 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCc--cccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 6889999999999999999999999998755 22467889999999999999999999999999999998873 23
Q ss_pred hhhHHHHHHHHHHHHhhhceeeeeeecchhh
Q 016826 323 HNYLTVFAITVLEMLRRFQWAFFRVENEWNK 353 (382)
Q Consensus 323 ~~~~~~~~l~~lEi~RR~iWnffRlEnEh~k 353 (382)
+++...++++++||+||++||+|||||||+|
T Consensus 315 ~~~~~~~~~~~lEi~RR~iWnffRlE~Ehin 345 (345)
T PF03124_consen 315 NSEIFIFILAILEIFRRFIWNFFRLENEHIN 345 (345)
T ss_pred hHHHHHHHHHHHHHHHHHhhheeeeeHhhcC
Confidence 4577889999999999999999999999975
No 2
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-77 Score=619.16 Aligned_cols=348 Identities=34% Similarity=0.619 Sum_probs=296.1
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCeeEEEecCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 016826 9 DLFLYEAFLYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQ-DHLTHREVWKCATWMTIIVPTSMTAYLYLYSHG 87 (382)
Q Consensus 9 ~~~~~~~~~~y~~~~l~~l~~~l~~~nl~vw~~~~INy~~IFe~~~-~~l~~~~~~~~a~~lt~i~~~s~~~~l~~~~~g 87 (382)
+...-|+..+.++.++++++..++|+|+++|+++||||++|||+++ +++.+++++.+++...+++..+++.+++....|
T Consensus 256 ~~~~~~~~~~l~~~~~v~l~~fl~~~niy~W~~~rVNy~fIf~~~~~~~l~~~~~l~i~~~~~~~~~l~~l~~l~~~~~~ 335 (617)
T KOG1162|consen 256 QRFYMETMFPLYGFGLVVLHKFLYNVNIYEWSRTRVNYKFIFEFDQRTELGYRDILLIHNTNGILEFLPVLKNLDMSMSG 335 (617)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhcCCceeeecCCccccccHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 4445566644444888889999999999999999999999999999 589999999999998888877777776543322
Q ss_pred ccchhhhhhHHHHHHHHHHHhhchhhhhhhHHHHHHHHHhHhh-cCcceeecchhhhhHhhhhHHHHhhccceeEEEeec
Q 016826 88 EVSLAASQPVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIV-LPLQAISFSDFFLADILTSMAKVFSDLERSVCRMVH 166 (382)
Q Consensus 88 ~~~~~~~~Pl~l~~~~~~~l~~P~~i~~~~~R~~~~~~l~ril-~pf~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~~~~ 166 (382)
. ..+..|+.+++++++++++|++++|+++|+|+++++.||+ +|+++|.|+|||+|||+||++++++|+++++|+|..
T Consensus 336 ~--~~~~~Pl~ll~~~~~~L~~Pf~~fY~sSRf~ll~~l~rvi~spl~~V~~~DFfl~Dql~S~v~a~~~l~~~~C~y~~ 413 (617)
T KOG1162|consen 336 Q--TTELSPLILLLLFFFLLVCPFNTFYRSSRFWLLKRLFRVLSSPLYKVLFVDFFLADQLTSLVLALRDLEFFICYYGT 413 (617)
T ss_pred C--CcccchHHHHHHHHheeeccchhhhHhhHHHHHHHHHHHHhccceeeccccccHHHHHHHHHHHHHhHHHhheeecc
Confidence 2 2567899999999999999999999999999999999997 699999999999999999999999999999999965
Q ss_pred ccccccccccCC-CCcC-CccchhhhHhhhhHHHHHHHHHHHhhcCCCcchhhhHHHHHhhHHHHHHHHHhhhccCCCCc
Q 016826 167 RQVATIAWFEAD-SVCG-SHSVAIPLVLVLPYLFRLFQCLRQYKDTREKTALFNALKYSTAVPVIFLSALKYHVLPGSWT 244 (382)
Q Consensus 167 ~~~~~~~~~~~~-~~c~-~~~~~~p~~~~lP~~iR~~QClrry~dt~~~~hL~Na~KY~ss~~vi~~s~~~~~~~~~~~~ 244 (382)
+ +|..++ ..|. +++...++++++|+++|++||+|||+|+++.+|++||+||+++++++.+++... ..+++
T Consensus 414 ~-----~~~~~~~~~~~~~~~~~~~iva~lP~~~RfLQClRR~~d~~~~~hL~NAlKY~~~i~~v~~~~~y~-~~~~~-- 485 (617)
T KOG1162|consen 414 G-----DFQARRTCYCKDDYIEFQSIVAVLPYWFRFLQCLRRYRDEKAFPHLLNALKYSTTILAVMLTTLYR-ILPGS-- 485 (617)
T ss_pred c-----ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHH-HcCCc--
Confidence 4 344443 1233 345677899999999999999999999988899999999999999999887643 32322
Q ss_pred cchhhHHHHHHHHHhHHHhhhhhhccCCCCccccccccCCCCcccccccCCcchhhhhhhhhhhhhhhhhhhcccccc--
Q 016826 245 NFYRPLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLILRCTWTYKLSAHLR-- 322 (382)
Q Consensus 245 ~~~~~~wi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR~~l~y~~~~~Yy~aiv~n~ilRf~W~~~l~~~~~-- 322 (382)
..++..|++++.+||+|+++||++|||||+...+ + |+||++++||+|++||+||+.|+++|++|+++++.+..
T Consensus 486 ~~~~~l~~~~s~vaS~y~~~WDvv~DWgLl~~~~----~-~~lRd~l~~p~k~vYy~aiv~N~vLR~aW~~~~i~~~~~~ 560 (617)
T KOG1162|consen 486 SLWFALWILSSKVASLYTTYWDVVMDWGLLNRKS----K-PWLRDNLLYPQKWVYYSAIVLNFVLRFAWFFKTILVFHEE 560 (617)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHheecccccccC----c-hhhHHHhcccchheehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999976432 2 88999999999999999999999999999887665432
Q ss_pred h-hhHHHHHHHHHHHHhhhceeeeeeecchh----hhcccCccCCCCCCCChhh
Q 016826 323 H-NYLTVFAITVLEMLRRFQWAFFRVENEWN----KMNSKSNIQLSEKDNTNEE 371 (382)
Q Consensus 323 ~-~~~~~~~l~~lEi~RR~iWnffRlEnEh~----k~~~~~~~~l~~~~~~~~~ 371 (382)
+ ....+++++.+||+||++||+|||||||. +.++.+++|+|++..|++.
T Consensus 561 ~~~~~~~~i~a~LEIiRRfiWnfFRLEnEhlnN~g~fRa~~~v~l~~~~~~~~d 614 (617)
T KOG1162|consen 561 FLSDSMVFIMALLEIIRRFIWNFFRLENEHLNNVGKFRAFRDVPLPFSYMDESD 614 (617)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhccccccCCchhhhccccc
Confidence 2 46778999999999999999999999997 5799999999977666553
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-61 Score=458.68 Aligned_cols=323 Identities=30% Similarity=0.528 Sum_probs=250.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhCCCCeeEEEecCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCc--
Q 016826 17 LYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQDHL-----THREVWKCATWMTIIVPTSMTAYLYLYS-HGE-- 88 (382)
Q Consensus 17 ~~y~~~~l~~l~~~l~~~nl~vw~~~~INy~~IFe~~~~~l-----~~~~~~~~a~~lt~i~~~s~~~~l~~~~-~g~-- 88 (382)
...++..++.....++.+|+++|+|.+|||++||+++..+- +.+.-..... ...+.+++. .++.. .|+
T Consensus 38 ~lw~~~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~~~a~~~~~dfh~~~i~--~~~~~~slf--iFl~~v~g~~~ 113 (384)
T COG5409 38 ALWGGWILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLSSTARNFNLDFHRIIIP--FHFFTTSLF--IFLNAVEGLKF 113 (384)
T ss_pred HHHhHHHHHHHHHHHhcCceeeEEeccccchhhhhHhHhhhhhcccchhhHHHhhh--HHHHHHHHH--HHHHHhhcccc
Confidence 44556778888889999999999999999999999987432 2221111110 111122221 22221 222
Q ss_pred -cchhhhhhHHHHHHHHHHHhhchhhhhhhHHHHHHHHHhHhh-cCcceeecchhhhhHhhhhHHHHhhccceeEEEeec
Q 016826 89 -VSLAASQPVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIV-LPLQAISFSDFFLADILTSMAKVFSDLERSVCRMVH 166 (382)
Q Consensus 89 -~~~~~~~Pl~l~~~~~~~l~~P~~i~~~~~R~~~~~~l~ril-~pf~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~~~~ 166 (382)
......+|++..+++..++++|+++.++.+|++++.++.|++ .|..+|+|+||++||++||++++++|++.++|.+..
T Consensus 114 ~l~~~~~~P~l~v~~vf~~ll~Pf~ii~y~sRr~Li~sliRv~l~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~~ 193 (384)
T COG5409 114 ILLFVYFLPLLQVGTVFWFLLKPFQIIYYWSRRYLIESLIRVFLFGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYSL 193 (384)
T ss_pred ceehhhhccHHHHHHHHHHhhcccceeeecchhhHHHHHHHHHHhccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHhh
Confidence 233456899999999999999999999999999999999996 799999999999999999999999999999999964
Q ss_pred ccccccccccCCCCcC-CccchhhhHhhhhHHHHHHHHHHHhhcCCCc-chhhhHHHHHhhHHHHHHHHHhhhccCCCCc
Q 016826 167 RQVATIAWFEADSVCG-SHSVAIPLVLVLPYLFRLFQCLRQYKDTREK-TALFNALKYSTAVPVIFLSALKYHVLPGSWT 244 (382)
Q Consensus 167 ~~~~~~~~~~~~~~c~-~~~~~~p~~~~lP~~iR~~QClrry~dt~~~-~hL~Na~KY~ss~~vi~~s~~~~~~~~~~~~ 244 (382)
. |.++ -|+ +|+..+|+++++|..+|++||+|||+|+++. +||+||+||++++|++.++++ ++..+++
T Consensus 194 ~------~~~p--Lc~sshs~~~g~~~~lP~ivR~lQCLRry~ds~~~fphLlNALKYs~~i~v~~~~~~-~r~~~~~-- 262 (384)
T COG5409 194 L------FREP--LCKSSHSDLSGLAALLPVIVRFLQCLRRYRDSLHEFPHLLNALKYSLNIPVLFCLWL-YRVYEGE-- 262 (384)
T ss_pred h------cccc--ccccCCcchHhHHHhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH-HHhccCc--
Confidence 3 2222 475 4788899999999999999999999999876 899999999999999988775 4443322
Q ss_pred cchhhHHHHHHHHHhHHHhhhhhhccCCCCccccccccCCCCcccccccCCcchhhhhhhhhhhhhhhhhhhcc-cc-cc
Q 016826 245 NFYRPLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLILRCTWTYKLS-AH-LR 322 (382)
Q Consensus 245 ~~~~~~wi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR~~l~y~~~~~Yy~aiv~n~ilRf~W~~~l~-~~-~~ 322 (382)
...+..|+.++.+||+||+.|||.||||+...... .....|+++.++ |+.||++|+++|++|+++.. ++ .+
T Consensus 263 ~~l~~l~~~~a~lnS~yT~~WDV~mDW~l~~~~~~---~~~~kr~~~~l~----y~~a~~inFllR~~Wi~~~~~~~~~~ 335 (384)
T COG5409 263 ERLFHLQIWFALLNSIYTSFWDVFMDWSLDSLTSL---RSWSKRAVTLLK----YHIAMIINFLLRFSWIVYYLPPNHIQ 335 (384)
T ss_pred ceeehHHHHHHHHHHHHHHhHHhheeeeecccccc---hhccccchhHHH----HHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 25678999999999999999999999999754321 122345665554 89999999999999999854 33 44
Q ss_pred hhhHH-HHHHHHHHHHhhhceeeeeeecchhhh----cccCccC
Q 016826 323 HNYLT-VFAITVLEMLRRFQWAFFRVENEWNKM----NSKSNIQ 361 (382)
Q Consensus 323 ~~~~~-~~~l~~lEi~RR~iWnffRlEnEh~k~----~~~~~~~ 361 (382)
|++.. .|.++.+||+||++|++||||+||.+. ++.++.+
T Consensus 336 ~~~~~~~F~m~~lEi~RR~vW~~FrveaE~~~n~~~~~~~~~~~ 379 (384)
T COG5409 336 HSADIFIFIMQLLEILRRFVWVFFRVEAEHSINFASFRAAGELK 379 (384)
T ss_pred hhhhhHHHHHHHHHHHHhheeeEEEeehHHHhhHHHhhhcccCC
Confidence 55433 389999999999999999999999853 4455554
No 4
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=24.55 E-value=61 Score=25.67 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=22.2
Q ss_pred HHHHHHHHhhcCCCcchhhhHHHHHhhH
Q 016826 199 RLFQCLRQYKDTREKTALFNALKYSTAV 226 (382)
Q Consensus 199 R~~QClrry~dt~~~~hL~Na~KY~ss~ 226 (382)
=+.||+++|.++++...|.++++=...-
T Consensus 23 ~~~~~L~~Y~~~~~Vd~LV~~L~~vLdt 50 (78)
T cd07347 23 QVTRALERYHQERNVDDLVRDLYLVLDT 50 (78)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcCc
Confidence 3689999999999888888887765443
No 5
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.01 E-value=1.3e+02 Score=21.08 Aligned_cols=27 Identities=19% Similarity=0.511 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhCC
Q 016826 17 LYYNPLLLVTMMVWLWGVNLWVFAQSN 43 (382)
Q Consensus 17 ~~y~~~~l~~l~~~l~~~nl~vw~~~~ 43 (382)
-+.+.+.++.++..+.|+-.|++++.+
T Consensus 8 ~~~~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 8 GFARSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 567788888899999999999998764
No 6
>PF11753 DUF3310: Protein of unknwon function (DUF3310); InterPro: IPR021739 This entry is represented by Bacteriophage T7, Gp1.7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.43 E-value=52 Score=24.50 Aligned_cols=12 Identities=42% Similarity=0.290 Sum_probs=9.7
Q ss_pred cchhhhHHHHHh
Q 016826 213 KTALFNALKYST 224 (382)
Q Consensus 213 ~~hL~Na~KY~s 224 (382)
...+.||+||++
T Consensus 29 ~f~~gnaiKY~~ 40 (60)
T PF11753_consen 29 GFCLGNAIKYLW 40 (60)
T ss_pred hHHHHHHHHHHH
Confidence 358999999973
No 7
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=21.12 E-value=2.1e+02 Score=21.72 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=25.0
Q ss_pred HHHHHHHHhhchhhhhhhHHHHHHHHHhHhhcCc
Q 016826 100 YIAVAMILIFPFDIFYLSSRYYLLRTLWRIVLPL 133 (382)
Q Consensus 100 ~~~~~~~l~~P~~i~~~~~R~~~~~~l~ril~pf 133 (382)
.+++.++++.|.....++......+++.+.++|.
T Consensus 9 ii~l~AlI~~pLGyl~~~~~~r~~~~lr~~l~~P 42 (62)
T PF11120_consen 9 IIILCALIFFPLGYLARRWLPRIRRTLRRRLFPP 42 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHhcCc
Confidence 3344566778888887888888888888888653
No 8
>KOG4116 consensus Ubiquinol cytochrome c reductase, subunit QCR8 [Energy production and conversion]
Probab=19.59 E-value=64 Score=26.05 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=23.6
Q ss_pred hcccccchhhHHHHHHHHHHHHhhhcee-eeeee
Q 016826 316 KLSAHLRHNYLTVFAITVLEMLRRFQWA-FFRVE 348 (382)
Q Consensus 316 ~l~~~~~~~~~~~~~l~~lEi~RR~iWn-ffRlE 348 (382)
++||-.|...-..|--++--++||+.|+ +|++=
T Consensus 25 aLSPfeQra~~g~F~~~~~n~fRr~~~~~~y~~i 58 (90)
T KOG4116|consen 25 ALSPFEQRAYAGFFDKAFPNMFRRFRSDQLYVVI 58 (90)
T ss_pred ecCchhhccccchhhhhhHHHHHHhhhccEEEEe
Confidence 3555555555556667889999999999 77764
No 9
>PF15269 zf-C2H2_7: Zinc-finger
Probab=16.33 E-value=44 Score=23.74 Aligned_cols=15 Identities=53% Similarity=0.822 Sum_probs=12.0
Q ss_pred CCcchhhhHHHHHhh
Q 016826 211 REKTALFNALKYSTA 225 (382)
Q Consensus 211 ~~~~hL~Na~KY~ss 225 (382)
..+.||+|-.||...
T Consensus 31 ~~kshl~nhmky~lc 45 (54)
T PF15269_consen 31 NEKSHLFNHMKYSLC 45 (54)
T ss_pred chHHHHHHHHHHHhh
Confidence 456899999999754
No 10
>PF11952 DUF3469: Protein of unknown function (DUF3469); InterPro: IPR021859 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 108 to 439 amino acids in length.
Probab=15.84 E-value=52 Score=26.51 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.9
Q ss_pred HhhhhHHHHhhccceeEEEee
Q 016826 145 DILTSMAKVFSDLERSVCRMV 165 (382)
Q Consensus 145 DqLtSl~~~l~Dl~~~~C~~~ 165 (382)
|+|.+++.++.++.+..|-|-
T Consensus 34 d~L~~Ls~v~~N~~fLGC~Yp 54 (87)
T PF11952_consen 34 DRLLCLSQVWANMEFLGCRYP 54 (87)
T ss_pred HHHHHHHHHHHhHHHHhcCCC
Confidence 999999999999999999884
Done!