Query 016826
Match_columns 382
No_of_seqs 138 out of 492
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2r_A Antimicrobial peptide e 44.3 6.9 0.00024 25.0 0.8 11 201-211 9-19 (37)
2 2gww_B IPAA; protein complex, 23.8 37 0.0013 20.3 1.5 14 144-157 16-29 (30)
3 2b5b_A Defensin; antibiotic; N 5.8 18 0.0006 22.6 -3.9 12 216-227 21-32 (36)
4 2qlw_A RHAU; mutarotase, isome 5.6 1.3E+02 0.0045 25.3 0.0 14 200-213 18-31 (144)
5 1jb0_J Photosystem 1 reaction 4.0 5E+02 0.017 17.1 2.0 14 218-231 3-16 (41)
6 1tul_A TLP20; telokin-like pro 4.0 1.4E+02 0.0047 24.1 -1.0 17 345-361 27-44 (108)
7 3bu8_A Telomeric repeat-bindin 3.8 4.2E+02 0.014 24.0 2.0 17 195-211 57-73 (235)
8 1y4m_A HERV-FRD_6P24.1 proviru 3.6 4.2E+02 0.015 18.4 1.4 13 143-155 12-24 (53)
9 1qbf_A Peptide YY, PYY; PP-fol 3.4 2.7E+02 0.0091 18.0 0.2 19 362-380 7-26 (37)
10 2lpe_A Kinase suppressor of RA 3.4 3E+02 0.01 23.3 0.6 13 197-209 137-149 (149)
No 1
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=44.33 E-value=6.9 Score=25.02 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=9.0
Q ss_pred HHHHHHhhcCC
Q 016826 201 FQCLRQYKDTR 211 (382)
Q Consensus 201 ~QClrry~dt~ 211 (382)
.||+|+|.|..
T Consensus 9 rqC~Rr~edeP 19 (37)
T 2l2r_A 9 SQCMRRHEDEP 19 (37)
T ss_dssp HHHHHHTSSCG
T ss_pred HHHHHhccCCc
Confidence 59999998763
No 2
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=23.80 E-value=37 Score=20.33 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=11.7
Q ss_pred hHhhhhHHHHhhcc
Q 016826 144 ADILTSMAKVFSDL 157 (382)
Q Consensus 144 aDqLtSl~~~l~Dl 157 (382)
-|.-||+++++.++
T Consensus 16 kdvttslskvlkni 29 (30)
T 2gww_B 16 KDVTTSLSKVLKNI 29 (30)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcc
Confidence 48889999999875
No 3
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=5.80 E-value=18 Score=22.62 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=8.5
Q ss_pred hhhHHHHHhhHH
Q 016826 216 LFNALKYSTAVP 227 (382)
Q Consensus 216 L~Na~KY~ss~~ 227 (382)
-+|++||...+|
T Consensus 21 pyncgkyiccvp 32 (36)
T 2b5b_A 21 PYNCGKYICCVP 32 (36)
T ss_dssp SSSBCCSSCSSS
T ss_pred CccCCceEEeEE
Confidence 378888876654
No 4
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=5.56 E-value=1.3e+02 Score=25.35 Aligned_cols=14 Identities=29% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCc
Q 016826 200 LFQCLRQYKDTREK 213 (382)
Q Consensus 200 ~~QClrry~dt~~~ 213 (382)
=.||+|+|++..++
T Consensus 18 ~~~~~~~~~~~~~~ 31 (144)
T 2qlw_A 18 GQQMGRDLYDDDDK 31 (144)
T ss_dssp --------------
T ss_pred hHHHHHHHhcccch
Confidence 37999999977443
No 5
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=4.02 E-value=5e+02 Score=17.10 Aligned_cols=14 Identities=29% Similarity=0.505 Sum_probs=10.9
Q ss_pred hHHHHHhhHHHHHH
Q 016826 218 NALKYSTAVPVIFL 231 (382)
Q Consensus 218 Na~KY~ss~~vi~~ 231 (382)
|..||.|+-||+..
T Consensus 3 ~f~kyLstAPVla~ 16 (41)
T 1jb0_J 3 HFLTYLSTAPVLAA 16 (41)
T ss_dssp HHHHHTTBHHHHHH
T ss_pred hHHHHHhhhhHHHH
Confidence 56799999988653
No 6
>1tul_A TLP20; telokin-like protein; 2.20A {Autographa californica nucleopolyhedroorganism_taxid} SCOP: b.85.5.1
Probab=3.98 E-value=1.4e+02 Score=24.05 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=9.6
Q ss_pred eeeecch-hhhcccCccC
Q 016826 345 FRVENEW-NKMNSKSNIQ 361 (382)
Q Consensus 345 fRlEnEh-~k~~~~~~~~ 361 (382)
|.+|+|| .|..++++-.
T Consensus 27 F~V~dEyhLkKl~vGAy~ 44 (108)
T 1tul_A 27 FIIEDEYYLKKRGVGAHI 44 (108)
T ss_dssp EEECSCEEECCCSCEEEE
T ss_pred EEEcceeeeeecccccEE
Confidence 6788885 3444444433
No 7
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=3.83 E-value=4.2e+02 Score=24.02 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhhcCC
Q 016826 195 PYLFRLFQCLRQYKDTR 211 (382)
Q Consensus 195 P~~iR~~QClrry~dt~ 211 (382)
.--+|.+|||.|--+.+
T Consensus 57 ~k~iri~QfLsRI~eG~ 73 (235)
T 3bu8_A 57 SRLLRVMQCLSRIEEGE 73 (235)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 45789999999987654
No 8
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=3.56 E-value=4.2e+02 Score=18.41 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.1
Q ss_pred hhHhhhhHHHHhh
Q 016826 143 LADILTSMAKVFS 155 (382)
Q Consensus 143 laDqLtSl~~~l~ 155 (382)
+.||++|++.+..
T Consensus 12 l~~ql~sla~vvl 24 (53)
T 1y4m_A 12 MQEQIDSLAAVVL 24 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5789999988754
No 9
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=3.43 E-value=2.7e+02 Score=18.02 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=11.7
Q ss_pred CCCCCCChhh-hhcccCCCC
Q 016826 362 LSEKDNTNEE-AQSLISNDH 380 (382)
Q Consensus 362 l~~~~~~~~~-~~~~~~~~~ 380 (382)
.|-+|.++|+ +|...+.+|
T Consensus 7 ~Pg~da~pEela~Y~~~Lr~ 26 (37)
T 1qbf_A 7 APGEDASPEELSRYYASLRH 26 (37)
T ss_dssp CCCCSSSSSTTTTTTTGGGH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 5656666655 877665543
No 10
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=3.37 E-value=3e+02 Score=23.29 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhc
Q 016826 197 LFRLFQCLRQYKD 209 (382)
Q Consensus 197 ~iR~~QClrry~d 209 (382)
+.|.+||+|+|.+
T Consensus 137 L~~Al~nLRk~t~ 149 (149)
T 2lpe_A 137 LQQALTCLRKVTG 149 (149)
T ss_dssp HHHHHTTGGGSCC
T ss_pred HHHHHHHHHHHcC
Confidence 5788999999853
Done!