Query 016826
Match_columns 382
No_of_seqs 138 out of 492
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 04:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016826.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016826hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 8.4 1.7E+02 0.012 15.8 2.8 17 28-44 11-27 (27)
2 d1ut3a_ g.9.1.1 (A:) Beta-defe 7.6 7.4 0.00054 23.1 -3.4 8 199-206 29-36 (38)
3 d1tula_ b.85.5.1 (A:) Tlp20, b 6.6 34 0.0024 25.4 -1.0 35 345-381 21-56 (102)
4 d3pvia_ c.52.1.6 (A:) Restrict 5.8 1.1E+02 0.0081 23.4 1.7 34 197-230 8-46 (156)
5 d1q90n_ f.23.27.1 (N:) PetN su 5.5 2.7E+02 0.02 15.4 2.8 18 26-43 13-30 (31)
6 d1rkla_ f.23.30.1 (A:) Oligosa 5.2 1E+02 0.0074 17.9 0.9 14 145-158 5-18 (36)
7 d1jb0j_ f.23.18.1 (J:) Subunit 4.7 1.9E+02 0.014 17.5 1.9 15 217-231 2-16 (41)
8 d3bqoa1 a.146.1.1 (A:62-265) T 3.0 2.7E+02 0.02 22.6 2.0 16 196-211 60-75 (204)
9 d1koha2 d.58.7.2 (A:105-200) m 2.7 3.4E+02 0.025 19.3 2.1 21 119-139 28-49 (96)
10 d1ouoa_ d.4.1.6 (A:) Periplasm 2.7 1.6E+02 0.012 24.1 0.1 8 345-352 56-63 (210)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.37 E-value=1.7e+02 Score=15.76 Aligned_cols=17 Identities=18% Similarity=0.726 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhCCC
Q 016826 28 MVWLWGVNLWVFAQSNV 44 (382)
Q Consensus 28 ~~~l~~~nl~vw~~~~I 44 (382)
..+-|++-+-+|.++|.
T Consensus 11 vvftwsiamvvwgrngl 27 (27)
T d2e74h1 11 VVFTWSIAMVVWGRNGL 27 (27)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHhhheeeeEEEccCCC
Confidence 45668888999998873
No 2
>d1ut3a_ g.9.1.1 (A:) Beta-defensin, BD {King penguin (Aptenodytes patagonicus), spheniscin-2 [TaxId: 9234]}
Probab=7.62 E-value=7.4 Score=23.09 Aligned_cols=8 Identities=50% Similarity=1.070 Sum_probs=5.7
Q ss_pred HHHHHHHH
Q 016826 199 RLFQCLRQ 206 (382)
Q Consensus 199 R~~QClrr 206 (382)
||.||-||
T Consensus 29 rfvqccrr 36 (38)
T d1ut3a_ 29 RFVQCCRR 36 (38)
T ss_dssp SSSEEEEE
T ss_pred HHHHHHHh
Confidence 67788765
No 3
>d1tula_ b.85.5.1 (A:) Tlp20, baculovirus telokin-like protein {AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]}
Probab=6.62 E-value=34 Score=25.42 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=17.6
Q ss_pred eeeecch-hhhcccCccCCCCCCCChhhhhcccCCCCC
Q 016826 345 FRVENEW-NKMNSKSNIQLSEKDNTNEEAQSLISNDHN 381 (382)
Q Consensus 345 fRlEnEh-~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 381 (382)
|-+|+|| .|..+.++-.+ +=.++++-.-|+++.|+
T Consensus 21 F~v~dEyhLkKl~vGAy~v--~Il~s~~L~~L~~~~~~ 56 (102)
T d1tula_ 21 FIIEDEYYLKKRGVGAHII--KVASSPQLRLLYKNAYS 56 (102)
T ss_dssp EEECSCEEECCCSCEEEEE--EECCCGGGGGGGTSEEE
T ss_pred EEEchheeehhhccccEEE--EEcChHHHHHHhcCCce
Confidence 6788885 44444444333 23334444445555443
No 4
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=5.84 E-value=1.1e+02 Score=23.42 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcCCCc---c--hhhhHHHHHhhHHHHH
Q 016826 197 LFRLFQCLRQYKDTREK---T--ALFNALKYSTAVPVIF 230 (382)
Q Consensus 197 ~iR~~QClrry~dt~~~---~--hL~Na~KY~ss~~vi~ 230 (382)
+.|+.-|+|+|.+-.++ . ---|++||.-.+++.-
T Consensus 8 ~~~l~p~i~eyq~la~k~~INDiFQdNGGKlLQvlmi~g 46 (156)
T d3pvia_ 8 LLELWPHIQEYQDLALKHGINDIFQGNGGKLLQVLLITG 46 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHcCchhhhhcCChhhhHHHHHhc
Confidence 56777799999864322 2 3469999987765543
No 5
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.48 E-value=2.7e+02 Score=15.42 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 016826 26 TMMVWLWGVNLWVFAQSN 43 (382)
Q Consensus 26 ~l~~~l~~~nl~vw~~~~ 43 (382)
++..+.|++.+-+|.|.|
T Consensus 13 ~~atfsfslslvvwgrsg 30 (31)
T d1q90n_ 13 TCVMFSFSLSLVVWGRSG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHhheeeEEEEEEeccC
Confidence 346678899999999876
No 6
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.24 E-value=1e+02 Score=17.89 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=9.5
Q ss_pred HhhhhHHHHhhccc
Q 016826 145 DILTSMAKVFSDLE 158 (382)
Q Consensus 145 DqLtSl~~~l~Dl~ 158 (382)
|||+|++..|+=..
T Consensus 5 ~qln~~~i~fgi~m 18 (36)
T d1rkla_ 5 EQLNSLAITFGIVM 18 (36)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred hhcCcEEeehhHHH
Confidence 78888877665443
No 7
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=4.71 E-value=1.9e+02 Score=17.47 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=11.7
Q ss_pred hhHHHHHhhHHHHHH
Q 016826 217 FNALKYSTAVPVIFL 231 (382)
Q Consensus 217 ~Na~KY~ss~~vi~~ 231 (382)
-|..||.|+-||+..
T Consensus 2 ~~~~~ylstAPVla~ 16 (41)
T d1jb0j_ 2 KHFLTYLSTAPVLAA 16 (41)
T ss_dssp HHHHHHTTBHHHHHH
T ss_pred chHHHHHhhhHHHHH
Confidence 467899999998653
No 8
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.96 E-value=2.7e+02 Score=22.63 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhcCC
Q 016826 196 YLFRLFQCLRQYKDTR 211 (382)
Q Consensus 196 ~~iR~~QClrry~dt~ 211 (382)
-.+|++|||.|--+.+
T Consensus 60 k~i~i~QfLsRI~eG~ 75 (204)
T d3bqoa1 60 RTIYICQFLTRIAAGK 75 (204)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHcCC
Confidence 4689999999987554
No 9
>d1koha2 d.58.7.2 (A:105-200) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.73 E-value=3.4e+02 Score=19.27 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=15.1
Q ss_pred HHHHHHHHhHhh-cCcceeecc
Q 016826 119 RYYLLRTLWRIV-LPLQAISFS 139 (382)
Q Consensus 119 R~~~~~~l~ril-~pf~~V~F~ 139 (382)
..|+++.+..+. .||.||.|.
T Consensus 28 K~wLl~~iq~~~pv~F~Pv~fh 49 (96)
T d1koha2 28 KAWLLSMIQSKSSVPFTPIEFH 49 (96)
T ss_dssp HHHHHHHHHHTCSSCCCCBSCC
T ss_pred HHHHHHHHHhcCCCCceeEEEE
Confidence 468998886654 378888774
No 10
>d1ouoa_ d.4.1.6 (A:) Periplasmic endonuclease Vvn {Vibrio vulnificus [TaxId: 672]}
Probab=2.65 E-value=1.6e+02 Score=24.14 Aligned_cols=8 Identities=38% Similarity=0.235 Sum_probs=6.4
Q ss_pred eeeecchh
Q 016826 345 FRVENEWN 352 (382)
Q Consensus 345 fRlEnEh~ 352 (382)
=|+|.||+
T Consensus 56 ~riewEHv 63 (210)
T d1ouoa_ 56 SRIEWEHV 63 (210)
T ss_dssp TSEEEEES
T ss_pred hcccceee
Confidence 37899997
Done!