Query 016828
Match_columns 382
No_of_seqs 253 out of 1026
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:10:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 9.4E-45 2E-49 355.2 10.1 187 45-231 11-209 (304)
2 smart00415 HSF heat shock fact 100.0 1.4E-34 3.1E-39 243.4 6.1 94 45-138 1-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 1.1E-34 2.3E-39 242.7 3.7 93 48-140 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 3.5E-33 7.5E-38 270.3 7.7 140 45-184 9-167 (282)
5 PF00178 Ets: Ets-domain; Int 95.9 0.0043 9.4E-08 50.8 1.7 57 52-108 7-65 (85)
6 PF03310 Cauli_DNA-bind: Cauli 95.3 0.05 1.1E-06 47.3 6.1 73 173-248 2-75 (121)
7 smart00413 ETS erythroblast tr 94.0 0.074 1.6E-06 43.8 4.0 56 53-108 8-65 (87)
8 KOG3806 Predicted transcriptio 89.9 0.34 7.4E-06 44.8 3.7 58 50-107 72-131 (177)
9 PF06005 DUF904: Protein of un 85.8 5.4 0.00012 31.7 7.7 45 161-205 23-67 (72)
10 COG3074 Uncharacterized protei 83.6 7.4 0.00016 31.0 7.4 42 161-202 23-64 (79)
11 PF02183 HALZ: Homeobox associ 81.3 6.5 0.00014 28.5 5.9 40 161-200 3-42 (45)
12 PF04340 DUF484: Protein of un 80.8 7.6 0.00017 36.7 8.0 75 120-221 17-91 (225)
13 PF11932 DUF3450: Protein of u 79.3 17 0.00036 35.0 9.9 59 161-219 54-112 (251)
14 TIGR02449 conserved hypothetic 77.5 29 0.00063 27.2 8.8 55 162-216 6-60 (65)
15 TIGR03752 conj_TIGR03752 integ 77.2 15 0.00032 39.1 9.4 57 160-216 70-127 (472)
16 PRK15422 septal ring assembly 76.3 19 0.00042 29.2 7.8 42 161-202 23-71 (79)
17 TIGR02449 conserved hypothetic 75.1 11 0.00025 29.4 6.0 43 163-205 21-63 (65)
18 TIGR02894 DNA_bind_RsfA transc 73.8 26 0.00056 32.2 8.9 54 165-218 99-152 (161)
19 PF10224 DUF2205: Predicted co 72.4 45 0.00098 27.1 9.1 55 164-218 9-64 (80)
20 PF12325 TMF_TATA_bd: TATA ele 72.3 27 0.00058 30.4 8.4 51 161-211 35-88 (120)
21 PF10473 CENP-F_leu_zip: Leuci 71.9 30 0.00065 31.0 8.7 57 161-217 57-113 (140)
22 PF08826 DMPK_coil: DMPK coile 70.8 30 0.00064 26.8 7.4 47 161-211 6-52 (61)
23 PF12329 TMF_DNA_bd: TATA elem 69.6 34 0.00073 27.2 7.7 55 161-215 17-71 (74)
24 PF11932 DUF3450: Protein of u 63.7 76 0.0017 30.4 10.5 69 161-232 47-115 (251)
25 PF10168 Nup88: Nuclear pore c 63.6 33 0.00072 38.4 8.9 60 160-219 562-621 (717)
26 PF06005 DUF904: Protein of un 63.1 75 0.0016 25.2 9.2 50 162-211 10-59 (72)
27 KOG4460 Nuclear pore complex, 60.7 35 0.00076 37.1 8.0 62 160-221 585-646 (741)
28 PF14282 FlxA: FlxA-like prote 59.5 60 0.0013 27.4 7.9 24 161-184 17-40 (106)
29 PF04111 APG6: Autophagy prote 59.2 96 0.0021 31.1 10.6 51 160-210 47-97 (314)
30 PF02183 HALZ: Homeobox associ 57.8 25 0.00055 25.4 4.5 33 161-193 10-42 (45)
31 PF05377 FlaC_arch: Flagella a 55.6 80 0.0017 24.0 7.0 33 168-200 5-37 (55)
32 PRK10963 hypothetical protein; 53.1 58 0.0013 30.9 7.6 73 120-220 14-87 (223)
33 PRK00888 ftsB cell division pr 52.5 49 0.0011 28.0 6.2 34 164-197 28-61 (105)
34 PRK06800 fliH flagellar assemb 51.9 1.1E+02 0.0023 29.0 8.8 31 161-191 36-66 (228)
35 PF07106 TBPIP: Tat binding pr 50.8 45 0.00097 30.0 6.1 59 161-219 77-137 (169)
36 PF08581 Tup_N: Tup N-terminal 50.2 1.2E+02 0.0027 24.5 7.9 47 164-210 5-58 (79)
37 KOG4005 Transcription factor X 49.5 76 0.0016 31.1 7.6 53 160-212 94-151 (292)
38 PRK09039 hypothetical protein; 48.5 1E+02 0.0023 31.3 9.0 44 162-205 122-165 (343)
39 PF02403 Seryl_tRNA_N: Seryl-t 47.5 1E+02 0.0022 25.4 7.4 49 160-208 40-98 (108)
40 PF10779 XhlA: Haemolysin XhlA 47.4 1.3E+02 0.0029 23.3 8.9 55 161-215 4-58 (71)
41 PF10018 Med4: Vitamin-D-recep 46.6 2.3E+02 0.005 26.1 10.3 58 167-228 6-63 (188)
42 COG3074 Uncharacterized protei 46.6 1.4E+02 0.003 24.0 7.3 48 163-210 11-58 (79)
43 PF07676 PD40: WD40-like Beta 46.2 15 0.00033 24.5 1.8 23 56-78 4-26 (39)
44 PF06156 DUF972: Protein of un 46.1 1E+02 0.0022 26.4 7.1 13 191-203 43-55 (107)
45 KOG0977 Nuclear envelope prote 45.3 1.2E+02 0.0026 33.0 9.1 70 160-229 166-248 (546)
46 PF04728 LPP: Lipoprotein leuc 45.3 1.3E+02 0.0029 22.9 6.8 39 163-201 10-48 (56)
47 PRK11637 AmiB activator; Provi 45.0 1.3E+02 0.0027 31.3 9.2 41 164-204 76-116 (428)
48 PRK10803 tol-pal system protei 44.7 1.7E+02 0.0036 28.6 9.4 55 161-215 38-99 (263)
49 COG1579 Zn-ribbon protein, pos 44.7 82 0.0018 30.7 7.2 47 161-207 36-82 (239)
50 PF05377 FlaC_arch: Flagella a 44.6 1.1E+02 0.0024 23.3 6.3 41 174-214 4-44 (55)
51 KOG4196 bZIP transcription fac 44.4 80 0.0017 28.1 6.3 43 166-215 77-119 (135)
52 PF10805 DUF2730: Protein of u 44.2 1.2E+02 0.0026 25.5 7.4 47 164-210 43-91 (106)
53 PRK14127 cell division protein 44.2 69 0.0015 27.5 5.9 37 165-201 32-68 (109)
54 PRK09039 hypothetical protein; 44.2 1.2E+02 0.0026 30.8 8.6 57 162-218 129-185 (343)
55 PF00038 Filament: Intermediat 43.6 3E+02 0.0064 26.9 11.1 51 161-211 214-264 (312)
56 PF11414 Suppressor_APC: Adeno 43.5 77 0.0017 26.0 5.8 45 159-203 3-47 (84)
57 COG3159 Uncharacterized protei 43.5 61 0.0013 31.2 5.9 76 117-219 12-87 (218)
58 PHA01819 hypothetical protein 43.1 33 0.00071 29.1 3.6 30 195-227 74-103 (129)
59 PF08317 Spc7: Spc7 kinetochor 42.8 1.6E+02 0.0035 29.5 9.3 42 163-204 209-250 (325)
60 PF09726 Macoilin: Transmembra 42.0 95 0.0021 34.8 8.1 26 160-185 422-447 (697)
61 PF11559 ADIP: Afadin- and alp 42.0 2.1E+02 0.0045 25.1 8.9 11 102-112 9-19 (151)
62 PF07200 Mod_r: Modifier of ru 41.7 1.7E+02 0.0037 25.6 8.3 63 164-231 42-104 (150)
63 smart00338 BRLZ basic region l 41.6 66 0.0014 24.3 4.9 25 162-186 32-56 (65)
64 PF04156 IncA: IncA protein; 41.5 2E+02 0.0043 26.1 8.9 59 160-218 92-150 (191)
65 smart00787 Spc7 Spc7 kinetocho 41.2 1.8E+02 0.0039 29.3 9.3 47 163-209 204-250 (312)
66 KOG4196 bZIP transcription fac 41.1 1.3E+02 0.0029 26.8 7.2 17 177-193 47-63 (135)
67 PRK13729 conjugal transfer pil 40.9 1.4E+02 0.0031 31.9 8.8 46 169-214 75-120 (475)
68 PRK10884 SH3 domain-containing 40.4 87 0.0019 29.7 6.5 29 107-135 65-95 (206)
69 PRK11637 AmiB activator; Provi 40.2 1.6E+02 0.0034 30.6 8.9 57 160-216 79-135 (428)
70 TIGR00219 mreC rod shape-deter 38.7 90 0.002 30.8 6.6 25 164-188 67-91 (283)
71 PF07106 TBPIP: Tat binding pr 38.5 1.4E+02 0.0031 26.7 7.4 24 161-184 84-107 (169)
72 PF09304 Cortex-I_coil: Cortex 38.4 2.6E+02 0.0056 24.1 8.5 54 160-213 20-73 (107)
73 PF08614 ATG16: Autophagy prot 38.1 1.9E+02 0.0041 26.7 8.4 25 187-211 154-178 (194)
74 PF11559 ADIP: Afadin- and alp 37.7 2.8E+02 0.0061 24.3 9.7 42 163-204 66-107 (151)
75 COG5481 Uncharacterized conser 37.7 1.9E+02 0.0042 22.4 7.0 28 171-198 5-32 (67)
76 PF10779 XhlA: Haemolysin XhlA 36.5 2E+02 0.0044 22.3 7.9 54 175-228 4-57 (71)
77 PF10211 Ax_dynein_light: Axon 36.4 1.8E+02 0.0039 27.1 7.9 24 162-185 126-149 (189)
78 PF07407 Seadorna_VP6: Seadorn 35.8 1.2E+02 0.0026 31.1 6.9 28 158-185 34-61 (420)
79 PF08227 DASH_Hsk3: DASH compl 35.8 1.7E+02 0.0038 21.3 6.2 38 180-218 5-42 (45)
80 PF07407 Seadorna_VP6: Seadorn 35.6 1.8E+02 0.0039 29.9 8.1 55 162-216 31-87 (420)
81 PF14817 HAUS5: HAUS augmin-li 35.6 2.2E+02 0.0048 31.6 9.5 39 172-210 81-119 (632)
82 PF10226 DUF2216: Uncharacteri 35.2 2.3E+02 0.005 26.9 8.2 50 162-211 54-128 (195)
83 COG4942 Membrane-bound metallo 35.1 2.1E+02 0.0045 30.3 8.8 44 161-204 64-107 (420)
84 PHA02047 phage lambda Rz1-like 35.0 2E+02 0.0043 24.4 7.0 44 176-219 33-76 (101)
85 PF12325 TMF_TATA_bd: TATA ele 34.9 3.1E+02 0.0067 23.9 8.8 45 161-205 21-65 (120)
86 TIGR02132 phaR_Bmeg polyhydrox 34.9 1.9E+02 0.0042 27.1 7.6 69 160-228 83-151 (189)
87 PRK10803 tol-pal system protei 34.8 1.4E+02 0.0031 29.0 7.3 45 167-211 58-102 (263)
88 PF04977 DivIC: Septum formati 34.5 1.2E+02 0.0026 23.1 5.5 10 219-228 52-61 (80)
89 PF11853 DUF3373: Protein of u 34.3 37 0.00081 36.3 3.3 37 161-205 23-59 (489)
90 COG1579 Zn-ribbon protein, pos 34.3 2.7E+02 0.0058 27.2 8.9 46 160-205 93-138 (239)
91 PF04977 DivIC: Septum formati 34.2 1.6E+02 0.0036 22.4 6.3 33 164-196 18-50 (80)
92 PF04880 NUDE_C: NUDE protein, 34.1 21 0.00046 32.9 1.2 37 161-202 19-55 (166)
93 PRK05431 seryl-tRNA synthetase 32.9 1.7E+02 0.0036 30.7 7.8 69 160-228 39-111 (425)
94 PF13094 CENP-Q: CENP-Q, a CEN 32.9 2.4E+02 0.0051 25.1 7.9 9 174-182 45-53 (160)
95 PF04201 TPD52: Tumour protein 32.7 1.4E+02 0.003 27.5 6.3 38 162-199 28-65 (162)
96 PF13874 Nup54: Nucleoporin co 32.7 2.9E+02 0.0063 24.3 8.3 44 163-206 44-87 (141)
97 TIGR03752 conj_TIGR03752 integ 32.4 2.7E+02 0.0059 29.8 9.2 41 161-201 64-104 (472)
98 PF07888 CALCOCO1: Calcium bin 31.5 1.8E+02 0.0039 31.8 7.8 40 162-201 142-181 (546)
99 PF10146 zf-C4H2: Zinc finger- 31.2 3.3E+02 0.0071 26.3 8.9 57 163-219 32-88 (230)
100 PF04102 SlyX: SlyX; InterPro 30.4 1.7E+02 0.0036 22.7 5.6 9 192-200 40-48 (69)
101 PF05524 PEP-utilisers_N: PEP- 30.3 1.3E+02 0.0028 25.3 5.5 56 177-232 35-91 (123)
102 COG1382 GimC Prefoldin, chaper 30.3 1.9E+02 0.0041 25.3 6.4 40 162-201 69-108 (119)
103 PF07798 DUF1640: Protein of u 30.2 2.6E+02 0.0057 25.4 7.8 15 99-113 6-20 (177)
104 PF06156 DUF972: Protein of un 30.0 3.2E+02 0.007 23.3 7.7 26 163-188 8-33 (107)
105 PRK13169 DNA replication intia 29.8 2.1E+02 0.0045 24.7 6.5 24 163-186 8-31 (110)
106 TIGR02894 DNA_bind_RsfA transc 29.3 2E+02 0.0044 26.5 6.7 35 174-208 101-135 (161)
107 PRK13182 racA polar chromosome 29.1 1.7E+02 0.0038 27.0 6.4 23 120-142 34-56 (175)
108 PF09787 Golgin_A5: Golgin sub 29.1 2.2E+02 0.0047 30.5 8.1 40 163-202 274-313 (511)
109 TIGR00414 serS seryl-tRNA synt 29.1 2.5E+02 0.0054 29.3 8.3 69 160-228 41-114 (418)
110 PLN02320 seryl-tRNA synthetase 28.7 2.1E+02 0.0046 30.8 7.8 52 160-211 104-164 (502)
111 PRK13182 racA polar chromosome 28.5 1.3E+02 0.0028 27.8 5.5 17 190-206 124-140 (175)
112 PF09726 Macoilin: Transmembra 28.1 2.9E+02 0.0064 31.0 9.0 57 161-217 416-479 (697)
113 KOG3119 Basic region leucine z 28.0 3.1E+02 0.0067 26.9 8.4 58 160-217 191-248 (269)
114 PLN02678 seryl-tRNA synthetase 27.9 2.3E+02 0.005 30.1 7.8 23 160-182 44-66 (448)
115 PF11853 DUF3373: Protein of u 27.8 54 0.0012 35.1 3.2 15 352-366 223-237 (489)
116 COG4942 Membrane-bound metallo 27.6 3.6E+02 0.0079 28.5 9.1 40 165-204 40-79 (420)
117 cd00632 Prefoldin_beta Prefold 27.2 2.4E+02 0.0052 23.4 6.4 44 160-203 60-103 (105)
118 PF02388 FemAB: FemAB family; 27.1 4.2E+02 0.0092 27.3 9.6 58 158-215 237-297 (406)
119 PHA01750 hypothetical protein 26.9 2.2E+02 0.0048 22.6 5.6 28 174-201 39-66 (75)
120 smart00338 BRLZ basic region l 26.9 2.7E+02 0.006 20.9 6.2 6 179-184 35-40 (65)
121 PF13863 DUF4200: Domain of un 26.8 3.8E+02 0.0082 22.4 8.2 8 222-229 112-119 (126)
122 PRK15396 murein lipoprotein; P 26.6 3E+02 0.0065 22.3 6.6 38 163-200 25-62 (78)
123 PF10458 Val_tRNA-synt_C: Valy 26.6 1.7E+02 0.0037 22.3 5.0 13 213-225 22-34 (66)
124 KOG4571 Activating transcripti 26.6 2.8E+02 0.006 28.0 7.6 46 160-210 222-267 (294)
125 KOG4010 Coiled-coil protein TP 26.5 2E+02 0.0044 27.2 6.3 39 162-200 43-81 (208)
126 COG3290 CitA Signal transducti 26.4 6.2E+02 0.013 27.7 10.7 81 158-238 313-405 (537)
127 COG3883 Uncharacterized protei 26.2 3.3E+02 0.0071 27.0 8.1 11 209-219 101-111 (265)
128 PF14817 HAUS5: HAUS augmin-li 26.0 4E+02 0.0086 29.7 9.5 59 161-219 84-142 (632)
129 PRK02119 hypothetical protein; 26.0 2.8E+02 0.0062 21.9 6.3 8 208-215 36-43 (73)
130 PF10473 CENP-F_leu_zip: Leuci 25.9 4.8E+02 0.011 23.3 9.5 70 161-230 22-91 (140)
131 PF12958 DUF3847: Protein of u 25.7 3.8E+02 0.0083 22.1 7.9 30 175-204 6-35 (86)
132 PRK00888 ftsB cell division pr 25.5 1.9E+02 0.0041 24.4 5.6 8 221-228 64-71 (105)
133 PF04156 IncA: IncA protein; 25.3 5.1E+02 0.011 23.3 9.1 43 162-204 108-150 (191)
134 KOG2196 Nuclear porin [Nuclear 25.2 1.4E+02 0.003 29.3 5.2 43 160-202 117-159 (254)
135 PF08317 Spc7: Spc7 kinetochor 25.1 4.2E+02 0.009 26.5 8.9 23 162-184 176-198 (325)
136 KOG0804 Cytoplasmic Zn-finger 25.0 3E+02 0.0066 29.4 7.9 47 164-210 348-394 (493)
137 PF10805 DUF2730: Protein of u 25.0 3.8E+02 0.0083 22.5 7.3 31 177-207 65-95 (106)
138 PF08172 CASP_C: CASP C termin 24.9 3E+02 0.0065 26.9 7.5 44 161-204 84-127 (248)
139 PRK03947 prefoldin subunit alp 24.7 3.1E+02 0.0067 23.7 7.0 47 160-206 91-137 (140)
140 PF04420 CHD5: CHD5-like prote 24.6 3.9E+02 0.0085 24.1 7.8 30 184-213 73-102 (161)
141 PF10883 DUF2681: Protein of u 24.1 3.6E+02 0.0077 22.4 6.7 39 162-200 22-60 (87)
142 PF08826 DMPK_coil: DMPK coile 24.1 3.4E+02 0.0074 20.9 7.0 39 162-200 17-55 (61)
143 PRK15396 murein lipoprotein; P 24.0 3.9E+02 0.0085 21.6 8.1 44 160-203 29-72 (78)
144 PRK13729 conjugal transfer pil 23.8 2.4E+02 0.0053 30.2 7.1 13 351-363 291-303 (475)
145 PF06785 UPF0242: Uncharacteri 23.5 3.5E+02 0.0077 27.9 7.8 40 164-203 100-139 (401)
146 PF05064 Nsp1_C: Nsp1-like C-t 23.4 34 0.00074 29.3 0.7 50 161-210 62-111 (116)
147 PRK13922 rod shape-determining 23.4 2.4E+02 0.0052 27.3 6.6 24 163-186 69-92 (276)
148 PF07889 DUF1664: Protein of u 23.1 3.9E+02 0.0084 23.6 7.2 6 224-229 108-113 (126)
149 PRK08032 fliD flagellar cappin 23.0 2.8E+02 0.0061 29.3 7.5 29 173-201 409-437 (462)
150 KOG1760 Molecular chaperone Pr 22.8 3.1E+02 0.0068 24.3 6.4 41 160-200 78-118 (131)
151 PRK15422 septal ring assembly 22.7 4.3E+02 0.0093 21.6 8.8 34 162-195 10-43 (79)
152 PF12269 zf-CpG_bind_C: CpG bi 22.7 2E+02 0.0044 28.0 5.8 28 192-219 37-64 (236)
153 PF14077 WD40_alt: Alternative 22.5 1E+02 0.0023 22.7 2.8 33 189-221 16-48 (48)
154 PF01920 Prefoldin_2: Prefoldi 22.4 3.3E+02 0.0071 21.8 6.4 41 161-201 60-100 (106)
155 PF12709 Kinetocho_Slk19: Cent 21.9 2.8E+02 0.0061 23.0 5.7 25 162-186 48-72 (87)
156 COG5613 Uncharacterized conser 21.6 5.6E+02 0.012 26.7 8.8 53 160-219 327-379 (400)
157 KOG1853 LIS1-interacting prote 21.4 7.3E+02 0.016 24.8 9.2 22 161-182 50-71 (333)
158 PF06216 RTBV_P46: Rice tungro 21.4 2.3E+02 0.005 28.2 5.8 45 160-204 68-112 (389)
159 TIGR02338 gimC_beta prefoldin, 21.3 3.5E+02 0.0077 22.6 6.4 40 162-201 66-105 (110)
160 PRK06975 bifunctional uroporph 21.3 7E+02 0.015 27.7 10.4 59 163-221 353-415 (656)
161 PF04380 BMFP: Membrane fusoge 21.2 1.7E+02 0.0037 23.4 4.3 17 172-188 52-68 (79)
162 PF12718 Tropomyosin_1: Tropom 20.8 4.7E+02 0.01 23.2 7.4 50 161-210 33-82 (143)
163 PF08606 Prp19: Prp19/Pso4-lik 20.6 4.5E+02 0.0096 21.0 8.3 36 160-195 5-40 (70)
164 PF00038 Filament: Intermediat 20.6 7.6E+02 0.017 23.9 9.6 40 167-206 213-252 (312)
165 KOG4497 Uncharacterized conser 20.5 1E+02 0.0022 31.8 3.4 77 48-129 162-258 (447)
166 COG1730 GIM5 Predicted prefold 20.4 5.4E+02 0.012 23.2 7.7 44 160-203 91-134 (145)
167 PF13815 Dzip-like_N: Iguana/D 20.3 2.6E+02 0.0055 23.8 5.4 41 161-201 78-118 (118)
168 PF10458 Val_tRNA-synt_C: Valy 20.1 4E+02 0.0087 20.3 7.9 25 161-185 2-26 (66)
169 PF12308 Noelin-1: Neurogenesi 20.0 3.6E+02 0.0079 22.9 6.0 26 186-211 70-95 (101)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=9.4e-45 Score=355.16 Aligned_cols=187 Identities=47% Similarity=0.831 Sum_probs=171.2
Q ss_pred CCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccCCccccC--CCCccccCC
Q 016828 45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD--PDRWEFANE 122 (382)
Q Consensus 45 ~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~--~~~~eF~h~ 122 (382)
++++|+.|||.||+||+++++|+|+++|++|||||+.+|++.+||+||||+||+|||||||+|||||+. +++|+|+|+
T Consensus 11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~ 90 (304)
T KOG0627|consen 11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP 90 (304)
T ss_pred CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CccCCcccchhhhhcccCCCcccc----ccCC------ccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 123 GFLGGQKHLLKTIKRRRHVSQSMQ----QRGG------EACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ 192 (382)
Q Consensus 123 ~F~Rg~~~LL~~IkRk~~~s~~~~----~~~~------g~~~e~~~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~q 192 (382)
+|+||+++||++|+||++...... .... ..+.......+..++.+|+++++.|+.|+.+||+++..++.+
T Consensus 91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~ 170 (304)
T KOG0627|consen 91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT 170 (304)
T ss_pred hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999998754421 1110 123344566889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhhH
Q 016828 193 LSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSN 231 (382)
Q Consensus 193 l~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~q~~ 231 (382)
++.+.+++...+.+|.+|+.|++++++.|.|+.++.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 999999999999999999999999999999999998764
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=1.4e-34 Score=243.36 Aligned_cols=94 Identities=65% Similarity=1.213 Sum_probs=90.6
Q ss_pred CCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccCCccccCC----------
Q 016828 45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDP---------- 114 (382)
Q Consensus 45 ~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~---------- 114 (382)
.+|+|+.|||+||+||++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCccccCCCccCCcccchhhhhcc
Q 016828 115 -DRWEFANEGFLGGQKHLLKTIKRR 138 (382)
Q Consensus 115 -~~~eF~h~~F~Rg~~~LL~~IkRk 138 (382)
+.|+|+||+|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 789999999999999999999996
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=1.1e-34 Score=242.69 Aligned_cols=93 Identities=55% Similarity=0.975 Sum_probs=81.5
Q ss_pred chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccCCccccCCC---------Ccc
Q 016828 48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPD---------RWE 118 (382)
Q Consensus 48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~~---------~~e 118 (382)
+||.|||+||+||+++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 49999999999999999999999999999999999999999999999999999999999999999643 399
Q ss_pred ccCCCccCCcccchhhhhcccC
Q 016828 119 FANEGFLGGQKHLLKTIKRRRH 140 (382)
Q Consensus 119 F~h~~F~Rg~~~LL~~IkRk~~ 140 (382)
|+||+|+||++++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.98 E-value=3.5e-33 Score=270.31 Aligned_cols=140 Identities=36% Similarity=0.684 Sum_probs=111.2
Q ss_pred CCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccCCccccC-C---------
Q 016828 45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD-P--------- 114 (382)
Q Consensus 45 ~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~-~--------- 114 (382)
.++.|+.|||.||++|++.++|+|+|+|+||||+|++.|.+.|||+||||+||+|||||||+|||+|+. .
T Consensus 9 ~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~ 88 (282)
T COG5169 9 QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNE 88 (282)
T ss_pred chhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccch
Confidence 356899999999999999999999999999999999999999999999999999999999999999996 1
Q ss_pred CCccccCCCccCCcccchhhhhcccCCCccccccC-Cccc---ccccc-----CCchHHHHHHHHHHHHHHHHHHHHHH
Q 016828 115 DRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRG-GEAC---LEVGQ-----YGLDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 115 ~~~eF~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~-~g~~---~e~~~-----~~l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
+.|+|.|++|++|..++|++|+|++..+....-.. ...+ .++.. ..+..++.+|....+.++..+..|+.
T Consensus 89 ~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~ 167 (282)
T COG5169 89 NVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKE 167 (282)
T ss_pred hheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchhHHhhhhHHHhhhhccccc
Confidence 24999999999999999999999887765421111 1111 12222 23455666666666666666665554
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=95.86 E-value=0.0043 Score=50.78 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=45.0
Q ss_pred HHHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhh-ccCCcCCCChhhHHhhhccCC
Q 016828 52 KTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTL-LPKYFKHSNFSSFIRQLNTYG 108 (382)
Q Consensus 52 KL~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~v-Lp~~Fkh~nfsSFvRQLN~YG 108 (382)
=|.++|.|+++.++|+|.. .+.-|.|.||+++++.= .-+.-...+|.++-|-|..|.
T Consensus 7 FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 7 FLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence 3678899999999999999 99999999999998631 112234578899999988774
No 6
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=95.26 E-value=0.05 Score=47.30 Aligned_cols=73 Identities=21% Similarity=0.338 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhhHHHhhhcc-cccccccccC
Q 016828 173 NVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELG-GVQTGRKRRL 248 (382)
Q Consensus 173 ~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~q~~~~~~~~~-~~~~~rkR~L 248 (382)
++++.||..|++.+..+...+.+|.+++...++.+++|..+-|+++++ |...+.+-+-++++- ++..++++++
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kelle~Lk~q~d~~i 75 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKELLEALKKQPDKQI 75 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHHHHHHT-------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHhcCCCCCc
Confidence 457889999999999999999999999999999999999999999997 777777766556665 5544444444
No 7
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=93.98 E-value=0.074 Score=43.84 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=43.1
Q ss_pred HHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhh-ccCCcCCCChhhHHhhhccCC
Q 016828 53 TYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTL-LPKYFKHSNFSSFIRQLNTYG 108 (382)
Q Consensus 53 L~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~v-Lp~~Fkh~nfsSFvRQLN~YG 108 (382)
|.++|.||++.++|+|.. ++.-|.+.|+++.++.= .-+-=...||..+-|-|..|-
T Consensus 8 L~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 8 LLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence 678999999999999998 68899999999877631 112224577888888887763
No 8
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=89.91 E-value=0.34 Score=44.78 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccC
Q 016828 50 LTKTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTY 107 (382)
Q Consensus 50 l~KL~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y 107 (382)
..=|-++|+|++..++|+|.. +|--|.+.||++.++.-=- +-=...||.-.-|-|..|
T Consensus 72 wqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 72 WQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred HHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 333556789999999999999 6889999999999874211 222356666666666655
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.76 E-value=5.4 Score=31.71 Aligned_cols=45 Identities=31% Similarity=0.322 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (382)
|..+++.||..+..|..+...|+++.+..+.+-.+..+|++++-.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666665555555555555555555555555555554433
No 10
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.64 E-value=7.4 Score=30.99 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (382)
+.-||+.||..++.|.+|+..++++...+..+...+.+...+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888898888888888888877766665555555544443
No 11
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.29 E-value=6.5 Score=28.47 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (382)
++.+.+.||+....|..+-..|.++.+....++..+...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556677778888888888888777777777777776655
No 12
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=80.77 E-value=7.6 Score=36.66 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=35.4
Q ss_pred cCCCccCCcccchhhhhcccCCCccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 120 ANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (382)
Q Consensus 120 ~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~~g~~~e~~~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeR 199 (382)
.||.|...+++||..|.=..+. .+ . .......+..||++.+.++.++..|-+.
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~~--------~~-a------------------vSL~erQ~~~LR~~~~~L~~~l~~Li~~ 69 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHPS--------GG-A------------------VSLVERQLERLRERNRQLEEQLEELIEN 69 (225)
T ss_dssp ---------------------------------H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCCC--------CC-c------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988742211 11 1 1112234566777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 016828 200 LLSTEKKQQQMMTFLAKALKNP 221 (382)
Q Consensus 200 l~~~E~kQqqm~~FLak~~qnp 221 (382)
-+..+..++++..+..+++.-.
T Consensus 70 Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 70 ARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888888888888887744
No 13
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.33 E-value=17 Score=34.99 Aligned_cols=59 Identities=17% Similarity=0.333 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~q 219 (382)
+..++..|+++.+.|...+.++..+....+.++..+++++..++...++|.-+|.+++.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555566666777777777777777777766666554
No 14
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=77.50 E-value=29 Score=27.20 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK 216 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak 216 (382)
...+++|=.-.+.|..|-..|++++.....+-..+.+++.....+...|++=|..
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455555555555666666666666666666666666666666666666655443
No 15
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.17 E-value=15 Score=39.07 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLS-AMEDRLLSTEKKQQQMMTFLAK 216 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~-~meeRl~~~E~kQqqm~~FLak 216 (382)
.+..++..|.++++.|..|..+||+...++..+++ +++..-+.+.+.++|+..-+.+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~ 127 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQ 127 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888887777776665 3434333444455555544443
No 16
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.26 E-value=19 Score=29.21 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRL-------RQHQQQSRDQLSAMEDRLLS 202 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~L-------rQqqq~~~~ql~~meeRl~~ 202 (382)
|.-||+.||.++..|..|+..+ +++.+.++.+...-++|+++
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888774 44444444444444444443
No 17
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=75.06 E-value=11 Score=29.44 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (382)
.+...|+.+...+..|-..|.++......++.+|-.|+..+|+
T Consensus 21 ~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 21 SENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3334444444444455555556666777888888888888875
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=73.75 E-value=26 Score=32.18 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016828 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (382)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~ 218 (382)
...++.++..|..|+..|+++...+..++..+..++..++..=+.|+..+-++-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777788888887777777777787777777777777777666654
No 19
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=72.43 E-value=45 Score=27.13 Aligned_cols=55 Identities=15% Similarity=0.407 Sum_probs=39.8
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016828 164 ELERLK-RDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (382)
Q Consensus 164 eie~LK-rd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~ 218 (382)
+++++. ..++.|..++..|+.....+..++...++.+..++...+-+..++..++
T Consensus 9 d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 9 DIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 3478889999999998888888888888888888777665555544443
No 20
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.29 E-value=27 Score=30.44 Aligned_cols=51 Identities=27% Similarity=0.500 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQ---QSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq---~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
+..++.+|...+..+..||++|-.... ....++..++.++..++.+.+-++
T Consensus 35 l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 35 LQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555666665544432 223444455555555555544444
No 21
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.88 E-value=30 Score=31.00 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~ 217 (382)
+..++..+-...+.|..|+..++.+...+...++.+.+|+..++..+.-+..+|..+
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 556666666666667777777777777777777777777777777766665555543
No 22
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.83 E-value=30 Score=26.76 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
|+.|| +-++.|..||.+.+..+..+..+|+..+.|.+.++.....+-
T Consensus 6 L~~Ei----rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 6 LEAEI----RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 567888899999988888888888888888887776665543
No 23
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.61 E-value=34 Score=27.17 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLa 215 (382)
|..|.+.|.+....+..-|.+||++......++..+..++...+.....+-.+|.
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666666677777777777777777777777777777766665554443
No 24
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.67 E-value=76 Score=30.42 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhhHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNA 232 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~q~~~ 232 (382)
+..+-..|..+...|..|+..|+.++......+...+.++..+++++.++-.....+. .++.+++..-+
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~---p~m~~m~~~L~ 115 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV---PLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4555666666666666777777666666777777777777777777776665555554 25555555543
No 25
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.63 E-value=33 Score=38.37 Aligned_cols=60 Identities=17% Similarity=0.382 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~q 219 (382)
.+...+..|+..++.-..+|..+++....+......+.+|+..+..+|..++.=+.++++
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888888888888888888888999999999999999877666655
No 26
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.08 E-value=75 Score=25.23 Aligned_cols=50 Identities=6% Similarity=0.173 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
+..|.++=.....|..|+..|+.+......+...+.+....+.+.+....
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555666666665544444444444444444444444333
No 27
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.66 E-value=35 Score=37.07 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=52.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNP 221 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp 221 (382)
.+...+..|++.+..-.++|..++++...++..-..+++|+.....+|.-++.-+.++++.|
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 45566777888888888888888888888888888899999999999999999999888865
No 28
>PF14282 FlxA: FlxA-like protein
Probab=59.52 E-value=60 Score=27.39 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
.+..|+.|++....|..+|..|..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478999999999999999999876
No 29
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.16 E-value=96 Score=31.15 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=40.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
.+..++..|+.+...|.+|+..|.++...+..++..++.....+.....+.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~ 97 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEY 97 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888899999999999998888888888888888777766544433
No 30
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.81 E-value=25 Score=25.42 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQL 193 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql 193 (382)
|...++.|+.++..|..|...|+.+.......+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666666666655554443
No 31
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.57 E-value=80 Score=24.02 Aligned_cols=33 Identities=9% Similarity=0.312 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (382)
Q Consensus 168 LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (382)
|..+...|...+..+|.+++.+...+..+++.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556655555555555555444
No 32
>PRK10963 hypothetical protein; Provisional
Probab=53.09 E-value=58 Score=30.91 Aligned_cols=73 Identities=12% Similarity=0.263 Sum_probs=42.5
Q ss_pred cCCCccCCcccchhhhhcccCCCccccccCCccccccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 120 ANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGL-DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (382)
Q Consensus 120 ~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~~g~~~e~~~~~l-~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~mee 198 (382)
.||.|.-.+++||..|+=..+. .|+ .+| +-+ +..||++...++.++..|-+
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~~--------~ga------VSL~ErQ--------------~~~LR~r~~~Le~~l~~Li~ 65 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHPV--------RGT------VSLVEWQ--------------MARQRNHIHVLEEEMTLLME 65 (223)
T ss_pred HCchHHhhCHHHHHhccCCCCC--------CCe------ecHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999977532211 111 112 222 44455555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 016828 199 RLLSTEKKQQQMMTFLAKALKN 220 (382)
Q Consensus 199 Rl~~~E~kQqqm~~FLak~~qn 220 (382)
.-+..+...+++.....+++.-
T Consensus 66 ~A~~Ne~l~~~~~~l~l~Ll~a 87 (223)
T PRK10963 66 QAIANEDLFYRLLPLQSRLAAA 87 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 6666666666665555555553
No 33
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=52.52 E-value=49 Score=28.00 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAME 197 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~me 197 (382)
.+..++++...+.+|+.++++++..++.++..+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666666655555554444443
No 34
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=51.91 E-value=1.1e+02 Score=29.04 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRD 191 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ 191 (382)
+..+.+.|...+..|.+|+..|+++||.+.+
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~ 66 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLER 66 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677888888888888888877776654
No 35
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.79 E-value=45 Score=30.04 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQL--SAMEDRLLSTEKKQQQMMTFLAKALK 219 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql--~~meeRl~~~E~kQqqm~~FLak~~q 219 (382)
|+.++..|+.+...|..++..|+.+...+...+ ..|...+..++....+|-.-|..+-+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666555555555555555554444333 23445555555555555554444433
No 36
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=50.17 E-value=1.2e+02 Score=24.47 Aligned_cols=47 Identities=11% Similarity=0.314 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQ-------LSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~q-------l~~meeRl~~~E~kQqqm 210 (382)
=++.+|.+...+..|+..++.+....+.+ |+.+.+.+-.+|..+.+|
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888887777765554433 344455555555554444
No 37
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=49.46 E-value=76 Score=31.11 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=36.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL-----STEKKQQQMMT 212 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~-----~~E~kQqqm~~ 212 (382)
.|+.+|..|-.+++.|..|-..||.+...+.++...+..++. -++.+|++++.
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~ 151 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHN 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 467888888888888888888888877766665554444443 34445555553
No 38
>PRK09039 hypothetical protein; Validated
Probab=48.52 E-value=1e+02 Score=31.28 Aligned_cols=44 Identities=32% Similarity=0.329 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (382)
..++..+|........+|..|++|...++.|+.+++..|...|.
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 39
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.46 E-value=1e+02 Score=25.41 Aligned_cols=49 Identities=29% Similarity=0.504 Sum_probs=29.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQ----------HQQQSRDQLSAMEDRLLSTEKKQQ 208 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQ----------qqq~~~~ql~~meeRl~~~E~kQq 208 (382)
.+..+++.|+.+++.+..+|..+.. +-..+..++..++..+..++.+.+
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888777754 233344444455555544444333
No 40
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=47.43 E-value=1.3e+02 Score=23.32 Aligned_cols=55 Identities=9% Similarity=0.222 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLa 215 (382)
+...+.+++.+...+...+..|.+.......++.++.+++..++..+.=+..++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~ii 58 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTII 58 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777777766665554443
No 41
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=46.64 E-value=2.3e+02 Score=26.07 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 016828 167 RLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (382)
Q Consensus 167 ~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~ 228 (382)
.|-.-...|...|..| ++++....+|..++..+.....+...++.-|..+-+ -|..++
T Consensus 6 ~L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~---~L~~~~ 63 (188)
T PF10018_consen 6 DLIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARK---ELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3434444555555555 455566888889999998888888888888877765 566665
No 42
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.62 E-value=1.4e+02 Score=23.99 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
..+.+-=.....|..||..|+.....+.++.+...+....+++..+|+
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333345567778888887776666666665555555555554444
No 43
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=46.15 E-value=15 Score=24.51 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=16.2
Q ss_pred HhcCCCCCCeEEEcCCCCeEEEe
Q 016828 56 MVEDLSTDAIVSWSRTRNSFIVW 78 (382)
Q Consensus 56 ml~d~~~~~iIsWs~~G~sFiI~ 78 (382)
+++.+..+.-..|+|||+.|+..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45666677778999999998654
No 44
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.07 E-value=1e+02 Score=26.36 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 016828 191 DQLSAMEDRLLST 203 (382)
Q Consensus 191 ~ql~~meeRl~~~ 203 (382)
.+...+.+|+...
T Consensus 43 ~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 43 IENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=45.34 E-value=1.2e+02 Score=33.03 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh--cCChHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQ-------QQSRDQLSAMEDRLLSTEKK----QQQMMTFLAKAL--KNPSFFQQ 226 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqq-------q~~~~ql~~meeRl~~~E~k----Qqqm~~FLak~~--qnp~Fl~q 226 (382)
.++.++..||+++..|..+|.++|.+. ...+++++.+.++|..+.+. ..+...+.++-. .++.|+..
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 356777777777777777777777643 23456777777888777643 334444444444 44455544
Q ss_pred HHh
Q 016828 227 LAQ 229 (382)
Q Consensus 227 l~q 229 (382)
=++
T Consensus 246 eL~ 248 (546)
T KOG0977|consen 246 ELA 248 (546)
T ss_pred HHH
Confidence 433
No 46
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.29 E-value=1.3e+02 Score=22.94 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
.++..|..+...|..++..||...+..+.+-.+-.+||.
T Consensus 10 ~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443
No 47
>PRK11637 AmiB activator; Provisional
Probab=45.04 E-value=1.3e+02 Score=31.26 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
++..+.++...+..+|..++++...+..++..++.++..++
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444443333
No 48
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.73 E-value=1.7e+02 Score=28.62 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNV-------LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (382)
Q Consensus 161 l~~eie~LKrd~~~-------L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLa 215 (382)
.+..+.+|.+..+. |...|..|+++...++-++..+..+++.+.++|..+..=|.
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544443332 33334444444444444444444455555555555443333
No 49
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.71 E-value=82 Score=30.71 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 207 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQ 207 (382)
+..++++++++...+..|+..++.|......+++.+++|+...+.++
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777667777777777776666554
No 50
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=44.61 E-value=1.1e+02 Score=23.29 Aligned_cols=41 Identities=10% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 174 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (382)
Q Consensus 174 ~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FL 214 (382)
.|..++-++.-...+.+.+++.+.+.+..+++..+.+|..-
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666655443
No 51
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=44.41 E-value=80 Score=28.11 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 166 ERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (382)
Q Consensus 166 e~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLa 215 (382)
+.|..++..|++||.+|+++ +..|..++.....+..++..|-.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e-------~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEE-------NSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555566666666666554 45555556666666677776643
No 52
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.17 E-value=1.2e+02 Score=25.52 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRL--RQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~L--rQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
.+....+....+..++..| ++....++..|..|+.+++.++.+.+.|
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344466666666666666 6666666666666666666666655554
No 53
>PRK14127 cell division protein GpsB; Provisional
Probab=44.17 E-value=69 Score=27.53 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
++.+-.|.+.|..|+..|+.+...++.++..++.++.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566778888888888888877777766666666654
No 54
>PRK09039 hypothetical protein; Validated
Probab=44.16 E-value=1.2e+02 Score=30.85 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~ 218 (382)
..++.....+...|.+||..||.|+..++..|...+.+.+..+.+...+-.-|..++
T Consensus 129 k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 129 KQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666777777777777777777777777777777766666666655555554
No 55
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=43.59 E-value=3e+02 Score=26.86 Aligned_cols=51 Identities=29% Similarity=0.377 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
...++..+++..+.|..++..|+.+...+..++..++.++...-..-+..+
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i 264 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEI 264 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 456777777777777777777777777777777766666655444433333
No 56
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=43.55 E-value=77 Score=25.99 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=33.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 159 YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (382)
Q Consensus 159 ~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (382)
+++...++.|.+++..|+++|..+.....=...+|+.+.+|++.+
T Consensus 3 ~~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 3 YNMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667889999999999999999887777777788777777644
No 57
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.50 E-value=61 Score=31.16 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=47.6
Q ss_pred ccccCCCccCCcccchhhhhcccCCCccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 117 WEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (382)
Q Consensus 117 ~eF~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~~g~~~e~~~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~m 196 (382)
|-+.||.|.+-+++|+..|.=..+.... -+.+ +-+ +.++|+.+..++.++.++
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~t------VSLv-------e~q--------------l~r~R~~~~~Le~~l~~L 64 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAGT------VSLV-------ERQ--------------LARLRNRIRELEEELAAL 64 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCe------eehH-------HHH--------------HHHHHHHHHHHHHHHHHH
Confidence 4568999999999999988754432111 1111 223 445556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 016828 197 EDRLLSTEKKQQQMMTFLAKALK 219 (382)
Q Consensus 197 eeRl~~~E~kQqqm~~FLak~~q 219 (382)
.+.-+..++-+.+++..-..+++
T Consensus 65 ~~~A~~N~~lf~r~~~lq~~Ll~ 87 (218)
T COG3159 65 MENARANERLFYRLHALQLDLLD 87 (218)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHh
Confidence 66666666667777666666555
No 58
>PHA01819 hypothetical protein
Probab=43.08 E-value=33 Score=29.09 Aligned_cols=30 Identities=40% Similarity=0.595 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 016828 195 AMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQL 227 (382)
Q Consensus 195 ~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql 227 (382)
.+++|+..++ |||..||..-+|.|+-++|.
T Consensus 74 vleqri~sle---qq~ttflssq~qqpqqvqqt 103 (129)
T PHA01819 74 VLEQRIASLE---QQVTTFLSSQMQQPQQVQQT 103 (129)
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhCchhhhhc
Confidence 4677887777 68999999999988655443
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.77 E-value=1.6e+02 Score=29.49 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
.++..+|.+...+..+|...++.....+.++..++..+....
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=42.01 E-value=95 Score=34.76 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=14.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQH 185 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq 185 (382)
.|+.++.+||.|.+...+.=..||++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 35666666666665555544445544
No 61
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.96 E-value=2.1e+02 Score=25.13 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=6.9
Q ss_pred hhhccCCcccc
Q 016828 102 RQLNTYGFRKV 112 (382)
Q Consensus 102 RQLN~YGF~Kv 112 (382)
.+|-..||...
T Consensus 9 ~~L~s~G~~~~ 19 (151)
T PF11559_consen 9 QQLLSRGYPSD 19 (151)
T ss_pred HHHHHCCCCCC
Confidence 34666777654
No 62
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.72 E-value=1.7e+02 Score=25.57 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhhH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSN 231 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~q~~ 231 (382)
+...|.+.+-.+..++..+|.+......++..++.++...+++++.+..-. +|.++...++..
T Consensus 42 ~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~-----s~~~l~~~L~~~ 104 (150)
T PF07200_consen 42 ENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY-----SPDALLARLQAA 104 (150)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHH
Confidence 334444444444455555555555555666666666666665555443211 345555555443
No 63
>smart00338 BRLZ basic region leucin zipper.
Probab=41.57 E-value=66 Score=24.32 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQ 186 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqq 186 (382)
+.++..|...+..|..++..|+++.
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.49 E-value=2e+02 Score=26.06 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~ 218 (382)
.+..+++.+.+....+..++..++...+.....+...++++...+.....+..-+....
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777777777777777777776666555544
No 65
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.21 E-value=1.8e+02 Score=29.32 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQ 209 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqq 209 (382)
.++.++|.+...+..++...+++....+.++..++.++.....+.++
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e 250 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSE 250 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433333
No 66
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.10 E-value=1.3e+02 Score=26.76 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016828 177 AEIVRLRQHQQQSRDQL 193 (382)
Q Consensus 177 ~El~~LrQqqq~~~~ql 193 (382)
.||++|+|.-.+++|+=
T Consensus 47 eEVvrlKQrRRTLKNRG 63 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRG 63 (135)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 35555555555555443
No 67
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.95 E-value=1.4e+02 Score=31.88 Aligned_cols=46 Identities=7% Similarity=0.068 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 169 KRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (382)
Q Consensus 169 Krd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FL 214 (382)
+.....|.++|..||++.+.+..+.+.++++|+.++...++|-.=+
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444567777777777777677777777777777777666665444
No 68
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.44 E-value=87 Score=29.69 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=16.8
Q ss_pred CCccccC--CCCccccCCCccCCcccchhhh
Q 016828 107 YGFRKVD--PDRWEFANEGFLGGQKHLLKTI 135 (382)
Q Consensus 107 YGF~Kv~--~~~~eF~h~~F~Rg~~~LL~~I 135 (382)
.||.+|. .++--|-|..|....|.+-..+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rl 95 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRV 95 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHH
Confidence 3677774 3344566777766666654333
No 69
>PRK11637 AmiB activator; Provisional
Probab=40.15 E-value=1.6e+02 Score=30.58 Aligned_cols=57 Identities=7% Similarity=0.123 Sum_probs=38.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK 216 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak 216 (382)
.+..++..+....+.+..+|..+.++...++.++..++.++...+..-.+++..+.+
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777777777776666555555554444
No 70
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=38.66 E-value=90 Score=30.84 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQHQQQ 188 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~ 188 (382)
.+.+|+.+++.|..|+..|+++++.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666444433
No 71
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.52 E-value=1.4e+02 Score=26.73 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
+..++..|+.+...|..|+..|..
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555555555544
No 72
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=38.42 E-value=2.6e+02 Score=24.09 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTF 213 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~F 213 (382)
+|...++..|..+..|..+-..|+..++.+..+......|+..++.+...+..-
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888887777777777777777777777777777666555544433
No 73
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.12 E-value=1.9e+02 Score=26.66 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 187 QQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 187 q~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
..+..++..++++++.++....+++
T Consensus 154 ~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 154 QALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555443
No 74
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.73 E-value=2.8e+02 Score=24.29 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
.++++|..+...|...+..+.++.........+++..++..+
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344333433333333333333333444444443333
No 75
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=37.69 E-value=1.9e+02 Score=22.43 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 171 DRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (382)
Q Consensus 171 d~~~L~~El~~LrQqqq~~~~ql~~mee 198 (382)
|+..+...+.+|||++.+...-+.+|.+
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555778899999999888888877765
No 76
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=36.52 E-value=2e+02 Score=22.29 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 016828 175 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (382)
Q Consensus 175 L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~ 228 (382)
+...+.+++..+......+..+|.+....+.....+-.-|.++-.|..++..++
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~i 57 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTI 57 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777888887777777777777777776666665554
No 77
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.45 E-value=1.8e+02 Score=27.06 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQH 185 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQq 185 (382)
..++..|+.+...|..++..++..
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 78
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=35.78 E-value=1.2e+02 Score=31.09 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=19.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 158 QYGLDGELERLKRDRNVLMAEIVRLRQH 185 (382)
Q Consensus 158 ~~~l~~eie~LKrd~~~L~~El~~LrQq 185 (382)
.++|..|.++||++++.|..|+.+|+.+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777777777443
No 79
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=35.77 E-value=1.7e+02 Score=21.28 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016828 180 VRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (382)
Q Consensus 180 ~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~ 218 (382)
..|-+|.......+...++.++.+.. |-.++.+|.++.
T Consensus 5 s~L~~qL~qL~aNL~~t~~~l~~~s~-Q~~~i~~LG~~~ 42 (45)
T PF08227_consen 5 SHLASQLAQLQANLADTENLLEMTSI-QANSIRKLGKIH 42 (45)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 34444444555556666666665553 347788887654
No 80
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=35.61 E-value=1.8e+02 Score=29.88 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA--MEDRLLSTEKKQQQMMTFLAK 216 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~--meeRl~~~E~kQqqm~~FLak 216 (382)
.+|.-.|+.++..|.+|+..|+.+...+++++.. +.++...++-.-..+...+-+
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk 87 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNK 87 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3577789999999999999999998888888764 667766665544444444443
No 81
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=35.61 E-value=2.2e+02 Score=31.63 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
+..|.+||.+||.+...+..+|..++..+...|...++|
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~ 119 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQM 119 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544444444444444444444444444
No 82
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=35.23 E-value=2.3e+02 Score=26.85 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQ-------------------------QQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqq-------------------------q~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
-.||..||..++.|+.|...||.-. ..++.++..-..+|+.+|.+|+.++
T Consensus 54 l~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~ 128 (195)
T PF10226_consen 54 LNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELI 128 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888886421 2344555555666666666665544
No 83
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.09 E-value=2.1e+02 Score=30.26 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
|..++..++.+...+..++............+|..++.++..++
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 44555555555555555555554444445555555555554444
No 84
>PHA02047 phage lambda Rz1-like protein
Probab=35.01 E-value=2e+02 Score=24.40 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016828 176 MAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (382)
Q Consensus 176 ~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~q 219 (382)
..+..+|.+|....+.++.+..+.+..++++..+--.=+..+++
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666665555555555554
No 85
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.89 E-value=3.1e+02 Score=23.89 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (382)
|...|.++.-+...|..++.+|.++......++..+..+......
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777788888888877777777777777776665543
No 86
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=34.85 E-value=1.9e+02 Score=27.10 Aligned_cols=69 Identities=10% Similarity=0.212 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~ 228 (382)
+++..+++|......+...+-.-..+.-.....+..|++|++.++.+-.+|+..|.+--.-.+-+...+
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~ 151 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETI 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHH
Confidence 456677666433333332222111133356788999999999999999999988875443333343333
No 87
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.84 E-value=1.4e+02 Score=29.01 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 167 RLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 167 ~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
.|..+.+.|..||.+||=+.+....+|..|.+|-+..-......+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777888877777777777777777776665555544
No 88
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.50 E-value=1.2e+02 Score=23.12 Aligned_cols=10 Identities=20% Similarity=0.820 Sum_probs=6.7
Q ss_pred cCChHHHHHH
Q 016828 219 KNPSFFQQLA 228 (382)
Q Consensus 219 qnp~Fl~ql~ 228 (382)
.+|.++..++
T Consensus 52 ~~~~~ie~~A 61 (80)
T PF04977_consen 52 NDPDYIEKVA 61 (80)
T ss_pred CCHHHHHHHH
Confidence 5777776665
No 89
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=34.28 E-value=37 Score=36.33 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (382)
+..+++.++ +.+.|.+||..|++|+ ..|.+|+..+|+
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~-------~~l~~~v~k~e~ 59 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQ-------DDLNDRVDKVEK 59 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhh-------cccccccchhhH
Confidence 345555554 5555555555555554 456666655553
No 90
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.27 E-value=2.7e+02 Score=27.20 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (382)
.|..++..+++....|..||..|...+.....++..+.+++..++.
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777766666666666666666665554
No 91
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.25 E-value=1.6e+02 Score=22.37 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~m 196 (382)
.+.+++.+.+.|..++..++++...+..++..+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555444444444
No 92
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.08 E-value=21 Score=32.89 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=8.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (382)
|+.|| .+++.|..|+++||.+..+++.++ .+.+++..
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHH----HHHHHHHHCH-----------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 44555 456666666777776666666666 55555543
No 93
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.90 E-value=1.7e+02 Score=30.69 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCChHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA-LKNPSFFQQLA 228 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq---qq~~~~ql~~meeRl~~~E~kQqqm~~FLak~-~qnp~Fl~ql~ 228 (382)
.+..+++.|+.+++.+..++..+++. ...+..+...+.+++..++.+...+-.-+... +.=|.++.--+
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~v 111 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSV 111 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 45678888889988888888764332 22344555556666666665555544333322 33344444333
No 94
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=32.86 E-value=2.4e+02 Score=25.11 Aligned_cols=9 Identities=33% Similarity=0.386 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 016828 174 VLMAEIVRL 182 (382)
Q Consensus 174 ~L~~El~~L 182 (382)
.|..|+.+.
T Consensus 45 lLq~e~~~~ 53 (160)
T PF13094_consen 45 LLQEEIEKE 53 (160)
T ss_pred HHHHHHHHH
Confidence 333333333
No 95
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=32.75 E-value=1.4e+02 Score=27.52 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeR 199 (382)
+.|-+.|+.+..-+..||..|||-+..-+.+...+..+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45667777777777777777776655444444444444
No 96
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=32.74 E-value=2.9e+02 Score=24.28 Aligned_cols=44 Identities=11% Similarity=0.238 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k 206 (382)
.++..+......+...+..|+.....+..++..+..|+..+.++
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR 87 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHR 87 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666667777777555555555565555555544433
No 97
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.42 E-value=2.7e+02 Score=29.84 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
+-.++..++++.+.|..+...|+.+...++.+...+..|++
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45666677777777777777776666666555555555554
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.48 E-value=1.8e+02 Score=31.75 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
..+++...+++..|..+...|+++...++.++..|+..+.
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 99
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.20 E-value=3.3e+02 Score=26.33 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~q 219 (382)
.-|..++++.+.|..|=...-.+++.+...+..||.-++..+....++..-..+.+.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777778888888888777777777776666664
No 100
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.38 E-value=1.7e+02 Score=22.75 Aligned_cols=9 Identities=44% Similarity=0.737 Sum_probs=2.9
Q ss_pred HHHHHHHHH
Q 016828 192 QLSAMEDRL 200 (382)
Q Consensus 192 ql~~meeRl 200 (382)
++..|.+|+
T Consensus 40 ~l~~L~~rl 48 (69)
T PF04102_consen 40 QLRLLRERL 48 (69)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHHHHH
Confidence 333333333
No 101
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=30.28 E-value=1.3e+02 Score=25.31 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHHHHhhHH
Q 016828 177 AEIVRLRQHQQQSRDQLSAMEDRLLSTE-KKQQQMMTFLAKALKNPSFFQQLAQSNA 232 (382)
Q Consensus 177 ~El~~LrQqqq~~~~ql~~meeRl~~~E-~kQqqm~~FLak~~qnp~Fl~ql~q~~~ 232 (382)
.|+.+|++-......+|..+.+++...- .....|+..-..++++|.|+......-.
T Consensus 35 ~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~ 91 (123)
T PF05524_consen 35 AEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIR 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHh
Confidence 4555555555556666666666644322 2334788888889999999988866544
No 102
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.26 E-value=1.9e+02 Score=25.32 Aligned_cols=40 Identities=13% Similarity=0.380 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
+.-++.|+...+.|...|..|+.|....+.++..|...|+
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777776666665555555443
No 103
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=30.15 E-value=2.6e+02 Score=25.40 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=11.6
Q ss_pred hHHhhhccCCccccC
Q 016828 99 SFIRQLNTYGFRKVD 113 (382)
Q Consensus 99 SFvRQLN~YGF~Kv~ 113 (382)
.|+++|..-||..-.
T Consensus 6 ~~v~~Le~~Gft~~Q 20 (177)
T PF07798_consen 6 KFVKRLEAAGFTEEQ 20 (177)
T ss_pred HHHHHHHHCCCCHHH
Confidence 588899888887653
No 104
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.97 E-value=3.2e+02 Score=23.26 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQ 188 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~ 188 (382)
..+..|..+...|..+|..|+++...
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~ 33 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQE 33 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444333
No 105
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.78 E-value=2.1e+02 Score=24.66 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQ 186 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqq 186 (382)
+.+.+|......|..++..|+++.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~ 31 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQL 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 106
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.28 E-value=2e+02 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 174 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (382)
Q Consensus 174 ~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQq 208 (382)
.|..|...|+.+...+..++..++..+..+++++.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544443
No 107
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.09 E-value=1.7e+02 Score=26.99 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=14.5
Q ss_pred cCCCccCCcccchhhhhcccCCC
Q 016828 120 ANEGFLGGQKHLLKTIKRRRHVS 142 (382)
Q Consensus 120 ~h~~F~Rg~~~LL~~IkRk~~~s 142 (382)
.|-.|...+...|..|++-+...
T Consensus 34 G~R~y~~~dl~~L~~I~~l~~~G 56 (175)
T PRK13182 34 GHYIFTEEDLQLLEYVKSQIEEG 56 (175)
T ss_pred CCEEECHHHHHHHHHHHHHHHcC
Confidence 44455555667788888766543
No 108
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=29.08 E-value=2.2e+02 Score=30.49 Aligned_cols=40 Identities=38% Similarity=0.476 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (382)
-|++.|+.+...+..|+..|+.|.+....+++.++.++..
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999998888888887777665
No 109
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=29.06 E-value=2.5e+02 Score=29.30 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=40.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCChHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQH----QQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA-LKNPSFFQQLA 228 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq----qq~~~~ql~~meeRl~~~E~kQqqm~~FLak~-~qnp~Fl~ql~ 228 (382)
.+..+++.|+.+++.+.++|..+++. .+.+..++..+.+++..++.+...+-.-+... +.=|.++.--+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 45678889999999999888775432 23445556666666666666555554333322 33344444333
No 110
>PLN02320 seryl-tRNA synthetase
Probab=28.68 E-value=2.1e+02 Score=30.84 Aligned_cols=52 Identities=23% Similarity=0.387 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVR---------LRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~---------LrQqqq~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
.+..+++.|+.+++.+..++.. |+.+-..+..++.++++.+..++.+.++++
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888777754 222333344444455555544444444333
No 111
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.46 E-value=1.3e+02 Score=27.83 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016828 190 RDQLSAMEDRLLSTEKK 206 (382)
Q Consensus 190 ~~ql~~meeRl~~~E~k 206 (382)
+.+|..|-.+|+.+|++
T Consensus 124 r~e~ee~~~~l~~le~~ 140 (175)
T PRK13182 124 RREMEEMLERLQKLEAR 140 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555543
No 112
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=28.05 E-value=2.9e+02 Score=31.00 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM-------EDRLLSTEKKQQQMMTFLAKA 217 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~m-------eeRl~~~E~kQqqm~~FLak~ 217 (382)
-...+.+|..|...|..||...||.=+.++.++..+ ...|..+.+...+|..-+..+
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999998888888884432 222444444444554443333
No 113
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.03 E-value=3.1e+02 Score=26.93 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=45.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~ 217 (382)
.-+...++.+|.+.++...-.+-|+.+..++.++..|+.....+..+..+|-.-|.++
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778899999999998888888888888888888888887777777776555544
No 114
>PLN02678 seryl-tRNA synthetase
Probab=27.87 E-value=2.3e+02 Score=30.08 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRL 182 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~L 182 (382)
.+..+++.|+.+++.+..+|..+
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~ 66 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKL 66 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888754
No 115
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.83 E-value=54 Score=35.12 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=6.5
Q ss_pred cccceeeccccccCC
Q 016828 352 QSEAEVELEDLVATP 366 (382)
Q Consensus 352 ~~~~~~~~e~l~~~~ 366 (382)
+..+-+.+|+|.+-|
T Consensus 223 Gasl~~~~d~i~~~~ 237 (489)
T PF11853_consen 223 GASLGYAPDKITGLP 237 (489)
T ss_pred eEEEEeccccccCCC
Confidence 333444444444444
No 116
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=27.59 E-value=3.6e+02 Score=28.49 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
+++.+++...+..+|...+++.+.++.+|..++..+..++
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~ 79 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLE 79 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333
No 117
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.21 E-value=2.4e+02 Score=23.36 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (382)
..+.-+..|......|..++.++..+...+..++..++.+++.+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888888888888888887777654
No 118
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.05 E-value=4.2e+02 Score=27.35 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=41.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 158 QYGLDGELERLKRDRNVLMAEIVRLRQHQQ---QSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (382)
Q Consensus 158 ~~~l~~eie~LKrd~~~L~~El~~LrQqqq---~~~~ql~~meeRl~~~E~kQqqm~~FLa 215 (382)
......-++.|+...+.|..++.+|..+.. ...+++..+++++...+++..++..+++
T Consensus 237 ~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 237 ELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888888888876432 4556777788888887777776665543
No 119
>PHA01750 hypothetical protein
Probab=26.95 E-value=2.2e+02 Score=22.58 Aligned_cols=28 Identities=7% Similarity=0.200 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 174 VLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 174 ~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
...+|+.+|+-+.+.+.....++++++.
T Consensus 39 IV~~ELdNL~~ei~~~kikqDnl~~qv~ 66 (75)
T PHA01750 39 IVNSELDNLKTEIEELKIKQDELSRQVE 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555555555555544444444443
No 120
>smart00338 BRLZ basic region leucin zipper.
Probab=26.88 E-value=2.7e+02 Score=20.85 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.1
Q ss_pred HHHHHH
Q 016828 179 IVRLRQ 184 (382)
Q Consensus 179 l~~LrQ 184 (382)
+..|..
T Consensus 35 ~~~L~~ 40 (65)
T smart00338 35 VEQLEA 40 (65)
T ss_pred HHHHHH
Confidence 333333
No 121
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=26.84 E-value=3.8e+02 Score=22.45 Aligned_cols=8 Identities=13% Similarity=0.588 Sum_probs=3.9
Q ss_pred hHHHHHHh
Q 016828 222 SFFQQLAQ 229 (382)
Q Consensus 222 ~Fl~ql~q 229 (382)
.||..+++
T Consensus 112 ~fL~~v~~ 119 (126)
T PF13863_consen 112 EFLEKVVP 119 (126)
T ss_pred HHHHHhcc
Confidence 35555544
No 122
>PRK15396 murein lipoprotein; Provisional
Probab=26.64 E-value=3e+02 Score=22.28 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (382)
.++++|..+.+.|..++..+.+..+.++..+++-.+.-
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA 62 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDA 62 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666666666666655555444433
No 123
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=26.64 E-value=1.7e+02 Score=22.34 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=7.3
Q ss_pred HHHHHhcCChHHH
Q 016828 213 FLAKALKNPSFFQ 225 (382)
Q Consensus 213 FLak~~qnp~Fl~ 225 (382)
-+.+.+.||+|+.
T Consensus 22 ~~~~kL~n~~F~~ 34 (66)
T PF10458_consen 22 RLEKKLSNENFVE 34 (66)
T ss_dssp HHHHHHCSTTHHH
T ss_pred HHHHHHcCccccc
Confidence 3345556666664
No 124
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.56 E-value=2.8e+02 Score=27.97 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=23.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
.-..+..+.|++++.+-+ .+.||.+ +.+..+++..+++++.+.+++
T Consensus 222 ~~~~~~~~rkr~qnk~AA--tRYRqKk---Rae~E~l~ge~~~Le~rN~~L 267 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAA--TRYRQKK---RAEKEALLGELEGLEKRNEEL 267 (294)
T ss_pred CCchHHHHHHHHHhHHHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777776633 3444433 233334444444444444444
No 125
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=26.45 E-value=2e+02 Score=27.23 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (382)
+.|-+.|+.+..-+..||..|||-+..-+.|...+.++|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556677777777777777665544444444444443
No 126
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=26.44 E-value=6.2e+02 Score=27.67 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=57.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 016828 158 QYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA------------MEDRLLSTEKKQQQMMTFLAKALKNPSFFQ 225 (382)
Q Consensus 158 ~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~------------meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ 225 (382)
.|-...|+.+|-.+.....+-...||-|.....|+|.. ..+=++.....||+...||...+++|..--
T Consensus 313 tFRdktei~~L~eqLt~vr~ya~aLRaq~HEfmNkLhtI~GLlql~~yd~a~~~I~~~~~~qq~~~~~l~~~i~~~~lAg 392 (537)
T COG3290 313 TFRDKTEIKKLTEQLTGVRQYAEALRAQSHEFMNKLHTILGLLQLGEYDDALDYIQQESEEQQELIDSLSEKIKDPVLAG 392 (537)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhHHHHHHhcccHHHHH
Confidence 45567788888777777777778888888777777654 334455556679999999999999985444
Q ss_pred HHHhhHHHhhhcc
Q 016828 226 QLAQSNAHRRELG 238 (382)
Q Consensus 226 ql~q~~~~~~~~~ 238 (382)
=|+-+..+-++++
T Consensus 393 ~LlgK~~rArElg 405 (537)
T COG3290 393 FLLGKISRARELG 405 (537)
T ss_pred HHHhHHHHHHHcC
Confidence 4444444456665
No 127
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.23 E-value=3.3e+02 Score=27.03 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.3
Q ss_pred HHHHHHHHHhc
Q 016828 209 QMMTFLAKALK 219 (382)
Q Consensus 209 qm~~FLak~~q 219 (382)
.++.-=+|+++
T Consensus 101 ~~l~~raRAmq 111 (265)
T COG3883 101 ELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHH
Confidence 33333344433
No 128
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=26.04 E-value=4e+02 Score=29.70 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~q 219 (382)
+..+|++|+.+...|..+|..+..+...-+..+..|-+++....++|--+-+|=.++-.
T Consensus 84 L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~ 142 (632)
T PF14817_consen 84 LEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEE 142 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655555555555666666677777666666666555544
No 129
>PRK02119 hypothetical protein; Provisional
Probab=25.96 E-value=2.8e+02 Score=21.88 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016828 208 QQMMTFLA 215 (382)
Q Consensus 208 qqm~~FLa 215 (382)
++.+.-|.
T Consensus 36 q~~id~L~ 43 (73)
T PRK02119 36 QFVIDKMQ 43 (73)
T ss_pred HHHHHHHH
Confidence 33333333
No 130
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=25.89 E-value=4.8e+02 Score=23.34 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhh
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQS 230 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~q~ 230 (382)
+...+..|.++......+...+.-+..+.+..+..|+..+..+-..-+++-.=|..+-....-+.+.++.
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666555555666666666666655555555555555444433333333333
No 131
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=25.69 E-value=3.8e+02 Score=22.10 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 175 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 175 L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
|.+|+...+++.....+++..++.|...++
T Consensus 6 l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 6 LQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555443
No 132
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.50 E-value=1.9e+02 Score=24.39 Aligned_cols=8 Identities=13% Similarity=0.098 Sum_probs=3.7
Q ss_pred ChHHHHHH
Q 016828 221 PSFFQQLA 228 (382)
Q Consensus 221 p~Fl~ql~ 228 (382)
+.++..++
T Consensus 64 ~dyiEe~A 71 (105)
T PRK00888 64 QEAIEERA 71 (105)
T ss_pred HHHHHHHH
Confidence 34554443
No 133
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.28 E-value=5.1e+02 Score=23.35 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
..++..++.+...+..++...+............+.+.++.+.
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 108 ESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444333
No 134
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=25.18 E-value=1.4e+02 Score=29.31 Aligned_cols=43 Identities=30% Similarity=0.372 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (382)
+|..|+..++.+++.|-+||..+-.||+.++.-|..+|..+..
T Consensus 117 ~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 117 GLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678888888888888888888888887777777777776654
No 135
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.14 E-value=4.2e+02 Score=26.55 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQ 184 (382)
..-+..|+..++.|..|+..|++
T Consensus 176 ~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 176 DELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544
No 136
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.02 E-value=3e+02 Score=29.39 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
++++.|.....+.+|...|++.+.+++..-+.++++++....++...
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666665554444433
No 137
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.00 E-value=3.8e+02 Score=22.49 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 177 AEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 207 (382)
Q Consensus 177 ~El~~LrQqqq~~~~ql~~meeRl~~~E~kQ 207 (382)
.++.+|+-....++.++..|+.+++++.+..
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333444444444455556666666555433
No 138
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.94 E-value=3e+02 Score=26.86 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
+..+-++.|..+..|..|+.+++++...++.++..++.-.-.+-
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999988888887777777776665543333
No 139
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.70 E-value=3.1e+02 Score=23.69 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k 206 (382)
.++.-++.|++....|...+..+.++......++..+...+..+..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888888888777777777776666666555443
No 140
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.61 E-value=3.9e+02 Score=24.07 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 184 QHQQQSRDQLSAMEDRLLSTEKKQQQMMTF 213 (382)
Q Consensus 184 Qqqq~~~~ql~~meeRl~~~E~kQqqm~~F 213 (382)
.+......+++.+.+.+.....+...++..
T Consensus 73 Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 73 RKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444333334444433
No 141
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.11 E-value=3.6e+02 Score=22.35 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (382)
.-.+.+++++++.|..|...|+.+......++.+-+-|-
T Consensus 22 ~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrq 60 (87)
T PF10883_consen 22 WWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQ 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777776666666665544443
No 142
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.06 E-value=3.4e+02 Score=20.94 Aligned_cols=39 Identities=8% Similarity=0.279 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (382)
..++.+.|..+..+...|.....+...+..+|..|+.++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333334444333333
No 143
>PRK15396 murein lipoprotein; Provisional
Probab=24.02 E-value=3.9e+02 Score=21.62 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=38.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (382)
.|..+++.|+.+...|..++..+|..-+..+.+-.+-.+||..+
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999998988888888754
No 144
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.80 E-value=2.4e+02 Score=30.23 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=7.2
Q ss_pred ccccceeeccccc
Q 016828 351 DQSEAEVELEDLV 363 (382)
Q Consensus 351 ~~~~~~~~~e~l~ 363 (382)
++.-|+.+|+-.|
T Consensus 291 ~G~vie~~V~G~V 303 (475)
T PRK13729 291 NGKTIDMPIKGHV 303 (475)
T ss_pred CCcEEEEEEEEEE
Confidence 3345566666655
No 145
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.51 E-value=3.5e+02 Score=27.91 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (382)
|.++|+-.++.|..++.+.+.-...+.++.+.||+=++..
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~ 139 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHL 139 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4455555555555555555444444444444444444333
No 146
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=23.41 E-value=34 Score=29.30 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
|..++.+++..+..|-.+|..+..+|..+..-|..+|+.+..+-..+...
T Consensus 62 L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l~~~~~~~ 111 (116)
T PF05064_consen 62 LYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKLLSNQSSQ 111 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 147
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.40 E-value=2.4e+02 Score=27.25 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQ 186 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqq 186 (382)
..+.+++.++..|.+|+..|+.++
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655544
No 148
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.14 E-value=3.9e+02 Score=23.56 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=2.3
Q ss_pred HHHHHh
Q 016828 224 FQQLAQ 229 (382)
Q Consensus 224 l~ql~q 229 (382)
+++.+.
T Consensus 108 v~~~V~ 113 (126)
T PF07889_consen 108 VQQMVE 113 (126)
T ss_pred HHHHHH
Confidence 333333
No 149
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=22.99 E-value=2.8e+02 Score=29.26 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 173 NVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 173 ~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
..|...+.+|..++..+..+|..+++|+.
T Consensus 409 ~~l~~~i~~l~~~i~~~~~rl~~~e~rl~ 437 (462)
T PRK08032 409 DGVNKTLKKLTKQYNAVSDSIDATIARYK 437 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444
No 150
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=3.1e+02 Score=24.31 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (382)
.++.-.+.|......|..+|..|++.+..+..+|.++...|
T Consensus 78 ~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 78 KLDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556678888899999999999988888887777665433
No 151
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.67 E-value=4.3e+02 Score=21.59 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 195 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~ 195 (382)
+..|...=.....|..||..|+.+......+++.
T Consensus 10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566777777777766666555544
No 152
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=22.65 E-value=2e+02 Score=28.03 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016828 192 QLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (382)
Q Consensus 192 ql~~meeRl~~~E~kQqqm~~FLak~~q 219 (382)
+...+..+++.++.+++.|..|++++-+
T Consensus 37 kq~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 37 KQQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666667777888888887654
No 153
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=22.46 E-value=1e+02 Score=22.65 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016828 189 SRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNP 221 (382)
Q Consensus 189 ~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp 221 (382)
++.++..+|+.++.+.+-..-+..|-++++-.|
T Consensus 16 l~vrv~eLEeEV~~LrKINrdLfdFSt~iiTkp 48 (48)
T PF14077_consen 16 LRVRVSELEEEVRTLRKINRDLFDFSTRIITKP 48 (48)
T ss_pred heeeHHHHHHHHHHHHHHhHHHHhhhhhhccCC
Confidence 344556666666666666677777777766543
No 154
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.40 E-value=3.3e+02 Score=21.82 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
.+.-++.|+.+...+..++.+|+.+...+..++..++..+.
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788888888888887777666666666666554
No 155
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.91 E-value=2.8e+02 Score=22.99 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQ 186 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqq 186 (382)
+..++.|..++..|..|+..|+.+.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 156
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=21.57 E-value=5.6e+02 Score=26.69 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=26.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~q 219 (382)
.+..+..++..|.+.+...+..|....+.+++++.. ...+.+++|.-...+++
T Consensus 327 ~~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~-------e~e~~qe~me~ifamLq 379 (400)
T COG5613 327 ALNAEAAQLQADSQLAAADVQNLQRIIERLKEELKL-------ELEKAQEEMENIFAMLQ 379 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444444444 44444555544444443
No 157
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=21.38 E-value=7.3e+02 Score=24.80 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRL 182 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~L 182 (382)
|+.++++|+..+..|..+..+|
T Consensus 50 lesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333333
No 158
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=21.37 E-value=2.3e+02 Score=28.17 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
.++.|++..+.+-..|...+-.|+.+....+.++..|.+.+.++.
T Consensus 68 ~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 68 NKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456667777777777777777777777777777777777666554
No 159
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.29 E-value=3.5e+02 Score=22.59 Aligned_cols=40 Identities=18% Similarity=0.478 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
+.-+..|+.....+...+..|..+......++..++.+++
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666666666666655554
No 160
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=21.26 E-value=7e+02 Score=27.67 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016828 163 GELERLKRDRNVLMAEIVRLRQH----QQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNP 221 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQq----qq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp 221 (382)
.++.++..+...+..|...+-++ ......++..++.++......|+++-..+..+-+++
T Consensus 353 ~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r 415 (656)
T PRK06975 353 QELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNR 415 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 44445555555555555433221 233445666777777777766666665555554443
No 161
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=21.24 E-value=1.7e+02 Score=23.36 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016828 172 RNVLMAEIVRLRQHQQQ 188 (382)
Q Consensus 172 ~~~L~~El~~LrQqqq~ 188 (382)
-.++...+.++|++...
T Consensus 52 Fd~q~~~L~~~r~kl~~ 68 (79)
T PF04380_consen 52 FDAQKAVLARTREKLEA 68 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 162
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.75 E-value=4.7e+02 Score=23.17 Aligned_cols=50 Identities=18% Similarity=0.382 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
.+.+|..|.+.+..|..+|..+..+.......+...+.+....+.-+..|
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri 82 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI 82 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
No 163
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=20.64 E-value=4.5e+02 Score=21.01 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=29.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 195 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~ 195 (382)
++.+=+..|+.+-.+++.|.-.||++...++.+|..
T Consensus 5 SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 5 SIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788999999999999999998888877753
No 164
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.60 E-value=7.6e+02 Score=23.95 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 167 RLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (382)
Q Consensus 167 ~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k 206 (382)
.++.+...+...+..|+.+...++.+...++.++..++..
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 3333333333333344444444444444444444444433
No 165
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=20.47 E-value=1e+02 Score=31.84 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=45.2
Q ss_pred chHHHHHHHhcCCCCC----CeEEEcCCCCeEEEeCCchhhhhhcc----------------CCcCCCChhhHHhhhccC
Q 016828 48 PFLTKTYEMVEDLSTD----AIVSWSRTRNSFIVWDSHQFSTTLLP----------------KYFKHSNFSSFIRQLNTY 107 (382)
Q Consensus 48 ~Fl~KL~~ml~d~~~~----~iIsWs~~G~sFiI~d~~~F~~~vLp----------------~~Fkh~nfsSFvRQLN~Y 107 (382)
-|..|-|.++..-..+ .-|.|+|||+...|||.-.=.+ |+. ++-.-..+.--+|-||..
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeeeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 3556678888754443 3389999999999998754443 211 222334455566666665
Q ss_pred CccccCCCCccccCCCccCCcc
Q 016828 108 GFRKVDPDRWEFANEGFLGGQK 129 (382)
Q Consensus 108 GF~Kv~~~~~eF~h~~F~Rg~~ 129 (382)
-++-. .+|-|+.=.++-.
T Consensus 241 tWk~f----~eflhl~s~~dp~ 258 (447)
T KOG4497|consen 241 TWKPF----GEFLHLCSYHDPT 258 (447)
T ss_pred eeeeh----hhhccchhccCch
Confidence 33221 3566665544443
No 166
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.36 E-value=5.4e+02 Score=23.17 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=27.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (382)
..+.-++.|++..+.|...+.++.+..+.+..++..+...++..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888877777777766666555555555555444433
No 167
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.34 E-value=2.6e+02 Score=23.85 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
+...+..|+.....+..++.++++.......++..+.+.++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 168
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.09 E-value=4e+02 Score=20.26 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQH 185 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQq 185 (382)
++.|+.+|.++..-+..++.++...
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~k 26 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777654
No 169
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=20.02 E-value=3.6e+02 Score=22.95 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 186 QQQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 186 qq~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
.+.++.+|..++.+++.+|.-.+.++
T Consensus 70 v~~~E~~mk~l~~k~~~~e~~~~~l~ 95 (101)
T PF12308_consen 70 VRKMETQMKGLESKFRQVEDDRKSLS 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence 46677777777777777776666554
Done!