Query 016828
Match_columns 382
No_of_seqs 253 out of 1026
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 8.6E-40 2.9E-44 274.6 6.8 95 44-138 2-106 (106)
2 2ldu_A Heat shock factor prote 100.0 5.3E-39 1.8E-43 277.2 6.5 98 44-141 15-123 (125)
3 3hts_B Heat shock transcriptio 100.0 5E-33 1.7E-37 231.9 2.6 80 44-123 10-100 (102)
4 1awc_A Protein (GA binding pro 89.8 0.13 4.3E-06 43.0 1.9 56 53-108 7-63 (110)
5 1fli_A FLI-1; transcription/DN 89.6 0.12 4.3E-06 42.2 1.7 61 48-108 7-68 (98)
6 1bc8_C SAP-1, protein (SAP-1 E 89.1 0.1 3.6E-06 42.3 0.9 73 48-120 6-83 (93)
7 2ypr_A Protein FEV; transcript 88.5 0.14 4.6E-06 42.3 1.2 73 48-120 9-86 (102)
8 4avp_A ETS translocation varia 88.3 0.19 6.5E-06 41.7 1.9 74 47-120 12-90 (106)
9 1gvj_A C-ETS-1 protein, P54; t 87.9 0.11 3.9E-06 45.3 0.4 78 43-120 36-118 (146)
10 2nny_A C-ETS-1 protein, P54; p 85.4 0.2 6.8E-06 44.8 0.6 67 44-110 62-129 (171)
11 3jtg_A ETS-related transcripti 84.2 0.57 2E-05 38.6 2.8 58 50-107 8-68 (103)
12 2jee_A YIIU; FTSZ, septum, coi 83.8 7 0.00024 30.8 8.7 51 161-211 25-75 (81)
13 2dao_A Transcription factor ET 82.8 0.39 1.3E-05 40.5 1.3 74 47-120 9-88 (118)
14 1hbx_G ETS-domain protein ELK- 81.7 0.28 9.5E-06 43.2 -0.1 73 49-121 8-85 (157)
15 2lf8_A Transcription factor ET 78.6 0.5 1.7E-05 40.4 0.0 55 53-107 11-67 (128)
16 1pue_E Protein (transcription 75.8 1.1 3.9E-05 35.9 1.8 56 53-108 8-68 (89)
17 1yo5_C SAM pointed domain cont 75.5 0.74 2.5E-05 37.5 0.7 64 47-110 11-77 (97)
18 1wwx_A E74-like factor 5 ESE-2 75.4 1.7 5.9E-05 36.0 2.9 63 46-108 8-73 (107)
19 3tnu_B Keratin, type II cytosk 72.0 25 0.00085 29.3 9.4 57 161-217 34-90 (129)
20 2yy0_A C-MYC-binding protein; 66.2 12 0.00041 27.0 5.3 32 162-193 18-49 (53)
21 3he5_B Synzip2; heterodimeric 66.2 17 0.00057 25.4 5.7 41 161-201 8-48 (52)
22 3tnu_A Keratin, type I cytoske 66.0 24 0.00082 29.5 8.1 57 161-217 36-92 (131)
23 3i00_A HIP-I, huntingtin-inter 63.4 37 0.0013 28.4 8.6 43 162-204 14-60 (120)
24 1a93_B MAX protein, coiled coi 62.6 12 0.0004 24.8 4.2 27 168-194 5-31 (34)
25 3e98_A GAF domain of unknown f 60.9 21 0.00072 33.2 7.4 76 119-221 41-116 (252)
26 4dzn_A Coiled-coil peptide CC- 57.5 15 0.00052 23.4 3.9 20 164-183 10-29 (33)
27 2wt7_A Proto-oncogene protein 56.6 22 0.00076 26.1 5.5 30 161-190 28-57 (63)
28 1wt6_A Myotonin-protein kinase 55.6 48 0.0016 26.0 7.4 39 170-208 24-62 (81)
29 1deb_A APC protein, adenomatou 55.0 56 0.0019 23.4 8.2 40 165-204 5-44 (54)
30 3hnw_A Uncharacterized protein 54.6 74 0.0025 27.0 9.2 42 162-203 67-108 (138)
31 1t2k_D Cyclic-AMP-dependent tr 54.4 22 0.00076 25.8 5.1 30 161-190 27-56 (61)
32 3hnw_A Uncharacterized protein 53.4 45 0.0016 28.4 7.7 51 160-210 72-122 (138)
33 2yy0_A C-MYC-binding protein; 53.2 26 0.00089 25.2 5.2 28 171-198 20-47 (53)
34 2wt7_B Transcription factor MA 52.3 33 0.0011 27.4 6.2 40 163-202 48-87 (90)
35 2w83_C C-JUN-amino-terminal ki 50.0 20 0.00069 27.8 4.3 41 160-200 34-74 (77)
36 4gkw_A Spindle assembly abnorm 49.0 75 0.0026 27.2 8.1 39 163-201 46-84 (167)
37 4dzn_A Coiled-coil peptide CC- 48.3 50 0.0017 21.0 5.2 21 164-184 3-23 (33)
38 3q8t_A Beclin-1; autophagy, AT 46.5 1E+02 0.0036 24.4 8.4 47 161-207 9-55 (96)
39 4etp_A Kinesin-like protein KA 45.3 72 0.0024 31.6 8.8 46 164-209 4-49 (403)
40 2xdj_A Uncharacterized protein 44.3 1.1E+02 0.0038 23.8 8.7 40 162-201 5-44 (83)
41 1deb_A APC protein, adenomatou 43.1 90 0.0031 22.4 7.0 43 161-203 8-50 (54)
42 3m48_A General control protein 41.7 28 0.00097 22.8 3.4 24 161-184 5-28 (33)
43 3cue_D Transport protein parti 40.6 19 0.00064 32.5 3.4 63 46-109 86-157 (193)
44 3na7_A HP0958; flagellar bioge 40.6 1.1E+02 0.0039 28.0 8.9 12 325-336 207-218 (256)
45 1kd8_B GABH BLL, GCN4 acid bas 39.7 55 0.0019 21.8 4.6 26 161-186 6-31 (36)
46 1sz7_A BET3 homolog, trafficki 39.6 27 0.00091 31.7 4.2 64 46-110 83-154 (200)
47 1c1g_A Tropomyosin; contractIl 39.3 1.2E+02 0.0042 26.0 8.6 20 164-183 14-33 (284)
48 4emc_A Monopolin complex subun 39.1 90 0.0031 28.1 7.5 52 177-228 27-78 (190)
49 3a7p_A Autophagy protein 16; c 38.9 1.3E+02 0.0046 26.1 8.4 48 163-210 68-129 (152)
50 1wt6_A Myotonin-protein kinase 38.7 1.1E+02 0.0038 23.9 7.0 40 172-211 16-58 (81)
51 1jnm_A Proto-oncogene C-JUN; B 37.5 22 0.00076 25.9 2.8 29 161-189 27-55 (62)
52 1hjb_A Ccaat/enhancer binding 37.0 45 0.0015 26.3 4.7 19 165-183 45-63 (87)
53 1g6u_A Domain swapped dimer; d 36.7 1E+02 0.0034 21.1 6.7 11 191-201 27-37 (48)
54 3uux_B Mitochondrial division 35.7 1.9E+02 0.0064 27.0 9.3 70 165-234 151-220 (242)
55 1ci6_A Transcription factor AT 35.5 59 0.002 23.9 4.9 21 163-183 30-50 (63)
56 2v66_B Nuclear distribution pr 35.1 1.8E+02 0.0063 23.9 8.3 40 172-211 37-76 (111)
57 2jee_A YIIU; FTSZ, septum, coi 34.7 1.6E+02 0.0056 22.9 9.2 34 162-195 12-45 (81)
58 1nkp_A C-MYC, MYC proto-oncoge 34.5 71 0.0024 24.9 5.5 32 165-196 54-85 (88)
59 1nkp_B MAX protein, MYC proto- 33.4 47 0.0016 25.4 4.2 28 165-192 49-76 (83)
60 3a7p_A Autophagy protein 16; c 33.1 2.4E+02 0.0083 24.5 10.1 66 166-231 64-137 (152)
61 3oja_B Anopheles plasmodium-re 33.1 1.6E+02 0.0053 29.7 9.3 44 162-205 508-551 (597)
62 2dgc_A Protein (GCN4); basic d 32.7 32 0.0011 25.4 3.0 26 161-186 35-60 (63)
63 3bj4_A Potassium voltage-gated 32.6 82 0.0028 22.4 4.9 30 189-218 15-44 (49)
64 3c3g_A Alpha/beta peptide with 32.4 49 0.0017 21.6 3.4 24 161-184 5-28 (33)
65 1kd8_A GABH AIV, GCN4 acid bas 31.4 91 0.0031 20.7 4.6 26 161-186 6-31 (36)
66 3oja_B Anopheles plasmodium-re 31.1 2.1E+02 0.0072 28.7 9.9 22 161-182 468-489 (597)
67 3c3f_A Alpha/beta peptide with 30.6 59 0.002 21.3 3.6 24 161-184 6-29 (34)
68 4etp_A Kinesin-like protein KA 30.6 1.3E+02 0.0045 29.7 8.0 33 173-205 6-38 (403)
69 4e61_A Protein BIM1; EB1-like 29.9 2.3E+02 0.0078 23.2 7.9 43 173-215 7-49 (106)
70 1jcd_A Major outer membrane li 29.3 1.6E+02 0.0054 21.1 6.3 41 161-201 9-49 (52)
71 3ra3_B P2F; coiled coil domain 29.1 48 0.0016 20.4 2.8 17 166-182 3-19 (28)
72 1lwu_C Fibrinogen gamma chain; 28.4 1.3E+02 0.0046 29.0 7.4 27 178-204 13-39 (323)
73 2bni_A General control protein 28.4 68 0.0023 21.1 3.6 24 161-184 6-29 (34)
74 1uo4_A General control protein 27.9 70 0.0024 21.0 3.6 24 161-184 6-29 (34)
75 2xu6_A MDV1 coiled coil; prote 27.9 87 0.003 24.0 4.7 42 161-202 26-67 (72)
76 4emc_A Monopolin complex subun 27.8 3.3E+02 0.011 24.5 9.2 41 161-201 25-65 (190)
77 3a2a_A Voltage-gated hydrogen 27.4 1.8E+02 0.0061 21.2 6.5 24 163-186 11-34 (58)
78 2oxj_A Hybrid alpha/beta pepti 27.4 67 0.0023 21.1 3.4 24 161-184 6-29 (34)
79 3u06_A Protein claret segregat 27.3 2.1E+02 0.0073 28.3 8.9 25 177-201 17-41 (412)
80 1gd2_E Transcription factor PA 27.1 63 0.0021 24.5 3.8 28 162-189 35-62 (70)
81 3t97_C Nuclear pore glycoprote 27.1 29 0.001 25.9 1.9 36 172-214 14-49 (64)
82 2wq1_A General control protein 27.0 75 0.0026 20.7 3.6 24 161-184 5-28 (33)
83 2xdj_A Uncharacterized protein 26.9 2.2E+02 0.0076 22.0 7.9 41 175-215 25-65 (83)
84 3qne_A Seryl-tRNA synthetase, 26.7 1.7E+02 0.0059 29.8 8.2 55 160-214 44-101 (485)
85 2dq0_A Seryl-tRNA synthetase; 26.6 1.7E+02 0.006 29.3 8.2 53 160-212 42-97 (455)
86 2v71_A Nuclear distribution pr 25.7 3.6E+02 0.012 24.1 9.2 22 162-183 48-69 (189)
87 2hy6_A General control protein 25.3 83 0.0029 20.7 3.6 24 161-184 6-29 (34)
88 1g6u_A Domain swapped dimer; d 25.3 1.6E+02 0.0056 20.0 6.7 11 194-204 23-33 (48)
89 3q0x_A Centriole protein; cent 25.1 2.4E+02 0.0084 25.9 8.2 41 161-201 169-209 (228)
90 3mq7_A Bone marrow stromal ant 25.0 1.1E+02 0.0037 25.6 5.1 30 172-201 73-102 (121)
91 1aq5_A Matrilin-1, CMP, cartil 24.9 1.4E+02 0.0049 21.0 5.0 24 177-200 23-46 (47)
92 3a2a_A Voltage-gated hydrogen 24.8 2E+02 0.0069 20.9 6.3 35 178-212 12-46 (58)
93 1nlw_A MAD protein, MAX dimeri 24.7 95 0.0032 23.8 4.5 28 165-192 49-76 (80)
94 3kqg_A Langerin, C-type lectin 24.4 1E+02 0.0035 25.9 5.3 32 161-196 4-35 (182)
95 2v71_A Nuclear distribution pr 24.3 3.6E+02 0.012 24.1 8.9 37 172-208 90-126 (189)
96 3ra3_A P1C; coiled coil domain 24.2 68 0.0023 19.7 2.8 20 167-186 4-23 (28)
97 1hjb_A Ccaat/enhancer binding 23.7 2.4E+02 0.0082 22.1 6.8 26 175-200 41-66 (87)
98 3s9g_A Protein hexim1; cyclin 23.7 2.9E+02 0.01 22.4 8.2 48 161-208 35-82 (104)
99 1lwu_C Fibrinogen gamma chain; 23.5 2.4E+02 0.0083 27.2 8.2 43 168-210 10-52 (323)
100 1wle_A Seryl-tRNA synthetase; 23.4 3E+02 0.01 28.1 9.3 55 160-214 81-146 (501)
101 2v66_B Nuclear distribution pr 22.8 3.2E+02 0.011 22.4 8.2 45 161-205 40-84 (111)
102 1l8d_A DNA double-strand break 22.5 2.1E+02 0.0071 22.5 6.5 35 164-198 4-38 (112)
103 1gu4_A CAAT/enhancer binding p 22.3 61 0.0021 25.1 3.0 13 168-180 48-60 (78)
104 2zqm_A Prefoldin beta subunit 21.9 2.6E+02 0.0089 21.9 7.0 42 160-201 67-108 (117)
105 3swf_A CGMP-gated cation chann 21.8 2.7E+02 0.0093 21.3 7.1 43 160-205 4-46 (74)
106 4ani_A Protein GRPE; chaperone 21.7 4.1E+02 0.014 24.1 8.9 62 163-232 59-120 (213)
107 3mq7_A Bone marrow stromal ant 21.7 3.4E+02 0.012 22.6 7.5 12 193-204 73-84 (121)
108 1wlq_A Geminin; coiled-coil; 2 21.4 2.7E+02 0.0091 21.8 6.5 21 165-185 40-60 (83)
109 2wvr_A Geminin; DNA replicatio 21.2 3E+02 0.01 25.1 7.7 15 50-64 22-36 (209)
110 3u06_A Protein claret segregat 21.0 2.5E+02 0.0087 27.8 8.0 36 172-207 5-40 (412)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=8.6e-40 Score=274.58 Aligned_cols=95 Identities=41% Similarity=0.787 Sum_probs=91.3
Q ss_pred CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccCCccccC----------
Q 016828 44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD---------- 113 (382)
Q Consensus 44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~---------- 113 (382)
.++|+||.|||.||+||+++++|+|+++|+||||+|+.+|+++|||+||||+||+||+||||+|||+|+.
T Consensus 2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~ 81 (106)
T 1hks_A 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD 81 (106)
T ss_dssp TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCccccCCCccCCcccchhhhhcc
Q 016828 114 PDRWEFANEGFLGGQKHLLKTIKRR 138 (382)
Q Consensus 114 ~~~~eF~h~~F~Rg~~~LL~~IkRk 138 (382)
++.|+|+||+|+||+++||.+|+||
T Consensus 82 ~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 82 RDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred CCceEEECcCccCcCHHHHhhCcCC
Confidence 4789999999999999999999997
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=5.3e-39 Score=277.19 Aligned_cols=98 Identities=52% Similarity=0.872 Sum_probs=93.5
Q ss_pred CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccCCccccC----------
Q 016828 44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD---------- 113 (382)
Q Consensus 44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~---------- 113 (382)
.++|+||.|||.||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.
T Consensus 15 ~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~ 94 (125)
T 2ldu_A 15 SNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKP 94 (125)
T ss_dssp CCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSC
T ss_pred CCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccccC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred -CCCccccCCCccCCcccchhhhhcccCC
Q 016828 114 -PDRWEFANEGFLGGQKHLLKTIKRRRHV 141 (382)
Q Consensus 114 -~~~~eF~h~~F~Rg~~~LL~~IkRk~~~ 141 (382)
++.|+|+||+|+||+++||.+|+||++.
T Consensus 95 ~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 95 ERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp SSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred CCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 4689999999999999999999999875
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.97 E-value=5e-33 Score=231.86 Aligned_cols=80 Identities=48% Similarity=0.907 Sum_probs=76.5
Q ss_pred CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccCCccccC----------
Q 016828 44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD---------- 113 (382)
Q Consensus 44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~---------- 113 (382)
..+|+||.|||.||+||+++++|+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.
T Consensus 10 ~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~ 89 (102)
T 3hts_B 10 MARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSN 89 (102)
T ss_dssp CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------C
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCccccCCC
Q 016828 114 -PDRWEFANEG 123 (382)
Q Consensus 114 -~~~~eF~h~~ 123 (382)
+++|||+|++
T Consensus 90 ~~~~wEF~n~~ 100 (102)
T 3hts_B 90 NDSRWEFENER 100 (102)
T ss_dssp CSCCEEEEECC
T ss_pred CcCCeEecCCC
Confidence 6899999986
No 4
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=89.83 E-value=0.13 Score=43.04 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=43.0
Q ss_pred HHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccCC
Q 016828 53 TYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG 108 (382)
Q Consensus 53 L~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG 108 (382)
|.++|.||++.++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|.
T Consensus 7 LleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY 63 (110)
T 1awc_A 7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY 63 (110)
T ss_dssp HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999889999999888763211 1123567888888887774
No 5
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=89.62 E-value=0.12 Score=42.24 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=45.6
Q ss_pred chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccCC
Q 016828 48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG 108 (382)
Q Consensus 48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG 108 (382)
....=|.++|+|++..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-
T Consensus 7 ~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY 68 (98)
T 1fli_A 7 QLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp CSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred eHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 344446677899999999999998889999999888863211 1224678888888887774
No 6
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=89.07 E-value=0.1 Score=42.30 Aligned_cols=73 Identities=12% Similarity=0.301 Sum_probs=52.3
Q ss_pred chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccCCcc----ccCCCCcccc
Q 016828 48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KVDPDRWEFA 120 (382)
Q Consensus 48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~eF~ 120 (382)
....=|.++|.||+..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+ |+...+..|.
T Consensus 6 ~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~ 83 (93)
T 1bc8_C 6 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK 83 (93)
T ss_dssp CHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred cHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence 344557889999999999999998889999999888864211 122467899999988887422 3444455554
No 7
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=88.47 E-value=0.14 Score=42.31 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=50.8
Q ss_pred chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccCCc----cccCCCCcccc
Q 016828 48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA 120 (382)
Q Consensus 48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~ 120 (382)
....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=...||..+-|-|..|-= +||...+..|.
T Consensus 9 ~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYk 86 (102)
T 2ypr_A 9 QLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYR 86 (102)
T ss_dssp CHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEE
T ss_pred eHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence 344446788999999999999988899999999888863111 11146788888888877732 24444444443
No 8
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=88.26 E-value=0.19 Score=41.69 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=52.9
Q ss_pred CchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccCCc----cccCCCCcccc
Q 016828 47 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA 120 (382)
Q Consensus 47 ~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~ 120 (382)
-....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=...||..+-|-|..|-= +|+...+..|.
T Consensus 12 i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYk 90 (106)
T 4avp_A 12 LQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK 90 (106)
T ss_dssp CCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEE
T ss_pred EeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEE
Confidence 3445557788999999999999998889999999888863211 22246789999998887732 34554455543
No 9
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=87.95 E-value=0.11 Score=45.30 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=56.5
Q ss_pred CCCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccCCcc----ccCCCCc
Q 016828 43 DAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KVDPDRW 117 (382)
Q Consensus 43 ~~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~ 117 (382)
..++.....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+ |+...+.
T Consensus 36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl 115 (146)
T 1gvj_A 36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY 115 (146)
T ss_dssp TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSS
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeE
Confidence 44566677778889999999999999999999999999988863211 122367788888888887433 4444455
Q ss_pred ccc
Q 016828 118 EFA 120 (382)
Q Consensus 118 eF~ 120 (382)
.|.
T Consensus 116 vY~ 118 (146)
T 1gvj_A 116 VYR 118 (146)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 10
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=85.43 E-value=0.2 Score=44.77 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=50.3
Q ss_pred CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccCCcc
Q 016828 44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR 110 (382)
Q Consensus 44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~ 110 (382)
.++.....=|.++|.|+...++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+
T Consensus 62 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k 129 (171)
T 2nny_A 62 SGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 129 (171)
T ss_dssp CSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTT
T ss_pred CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Confidence 4555566667889999999999999999999999999988863211 112357788888888887543
No 11
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=84.17 E-value=0.57 Score=38.61 Aligned_cols=58 Identities=10% Similarity=0.215 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCC-CCCeEEEcCC-CCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccC
Q 016828 50 LTKTYEMVEDLS-TDAIVSWSRT-RNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTY 107 (382)
Q Consensus 50 l~KL~~ml~d~~-~~~iIsWs~~-G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y 107 (382)
..=|.++|.||+ ..++|+|... ..-|.+.||++.++.-=. +-=...||..+-|-|..|
T Consensus 8 wqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyY 68 (103)
T 3jtg_A 8 WEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYY 68 (103)
T ss_dssp HHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence 334567889998 5689999984 458999999888864111 111578899999998887
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.81 E-value=7 Score=30.79 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
+..+++.||..+..|..|...++........+...+.+....-..+...|+
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888887777555554455555555554444444444433
No 13
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.81 E-value=0.39 Score=40.50 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=52.5
Q ss_pred CchHHHHHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccC---Cc-cccCCCCcccc
Q 016828 47 PPFLTKTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTY---GF-RKVDPDRWEFA 120 (382)
Q Consensus 47 ~~Fl~KL~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y---GF-~Kv~~~~~eF~ 120 (382)
...-.=|.++|.||++.++|+|.. ++.-|.+.|+++.++.-=. +-=...||...-|-|..| |+ +|+...+..|.
T Consensus 9 ~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~vY~ 88 (118)
T 2dao_A 9 RLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFR 88 (118)
T ss_dssp CCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSEEE
T ss_pred hHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEEEE
Confidence 444555788899999999999998 4568999999888764211 222468899999999888 32 34444555553
No 14
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=81.69 E-value=0.28 Score=43.23 Aligned_cols=73 Identities=12% Similarity=0.286 Sum_probs=52.2
Q ss_pred hHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccCCcc----ccCCCCccccC
Q 016828 49 FLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KVDPDRWEFAN 121 (382)
Q Consensus 49 Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~eF~h 121 (382)
...=|.++|.||+..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+ |+...+..|..
T Consensus 8 LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF 85 (157)
T 1hbx_G 8 LWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 85 (157)
T ss_dssp HHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred HHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence 44446788999999999999998889999999988864222 222467899999998887422 34444555543
No 15
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=78.58 E-value=0.5 Score=40.38 Aligned_cols=55 Identities=16% Similarity=0.372 Sum_probs=36.3
Q ss_pred HHHHhcCCCCCCeEEEcCCC-CeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccC
Q 016828 53 TYEMVEDLSTDAIVSWSRTR-NSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTY 107 (382)
Q Consensus 53 L~~ml~d~~~~~iIsWs~~G-~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y 107 (382)
|.++|.|+++.++|+|...+ .-|.+.|+++.++.-=. +.=...||...-|-|..|
T Consensus 11 LleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyY 67 (128)
T 2lf8_A 11 VYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHY 67 (128)
Confidence 56788999999999999854 58999999877752111 111234455555555555
No 16
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=75.83 E-value=1.1 Score=35.91 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=40.2
Q ss_pred HHHHhcCCCCCCeEEEcCC-CCeEEEe--CCchhhhhhccC--CcCCCChhhHHhhhccCC
Q 016828 53 TYEMVEDLSTDAIVSWSRT-RNSFIVW--DSHQFSTTLLPK--YFKHSNFSSFIRQLNTYG 108 (382)
Q Consensus 53 L~~ml~d~~~~~iIsWs~~-G~sFiI~--d~~~F~~~vLp~--~Fkh~nfsSFvRQLN~YG 108 (382)
|.++|.||++.++|+|... ..-|-+. |+++.++.-=.+ .=+..||...-|-|..|.
T Consensus 8 L~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY 68 (89)
T 1pue_E 8 LLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYG 68 (89)
T ss_dssp HHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHH
Confidence 5778999999999999974 3568775 677777632111 223678888888888773
No 17
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=75.50 E-value=0.74 Score=37.54 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=46.9
Q ss_pred CchHHHHHHHhcCCC-CCCeEEEcC-CCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccCCcc
Q 016828 47 PPFLTKTYEMVEDLS-TDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR 110 (382)
Q Consensus 47 ~~Fl~KL~~ml~d~~-~~~iIsWs~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~ 110 (382)
.....=|.++|.||+ ..++|+|.. ++.-|.+.|+++.++.-=. +-=...||...-|-|..|--+
T Consensus 11 i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~ 77 (97)
T 1yo5_C 11 IHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK 77 (97)
T ss_dssp CCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred eEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence 335555788899986 478999985 5779999999888864211 222468899999999888544
No 18
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=75.37 E-value=1.7 Score=35.98 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=45.3
Q ss_pred CCchHHHHHHHhcCCC-CCCeEEEcC-CCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccCC
Q 016828 46 PPPFLTKTYEMVEDLS-TDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG 108 (382)
Q Consensus 46 ~~~Fl~KL~~ml~d~~-~~~iIsWs~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG 108 (382)
......=|.++|.||+ ..++|+|.. +..-|.+.|+++.++.-=. +-=...||...-|-|..|.
T Consensus 8 ~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY 73 (107)
T 1wwx_A 8 SSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY 73 (107)
T ss_dssp SCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred cEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 3445566788899986 568999987 4678999999888864211 1114688889999888874
No 19
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.02 E-value=25 Score=29.32 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~ 217 (382)
...++..|++..+.|..||..++.+...++..+..++.|....-..-+..+.-|...
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~e 90 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEA 90 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999998888888888888888765444444444444433
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.19 E-value=12 Score=26.98 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQL 193 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql 193 (382)
..+++.||.++..|..++..|+++.+.+..++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677787777777777777776665555544
No 21
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=66.16 E-value=17 Score=25.37 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
+...|.+||+|+-.|...-..|..-..+++.++..++..+.
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777766665555555555555555555555443
No 22
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.97 E-value=24 Score=29.52 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=38.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~ 217 (382)
...++..|++..+.|..||..++.+...++..+..++.|....-..-+..+.-|...
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~e 92 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQ 92 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999999988888888888888887765444444444444433
No 23
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=63.37 E-value=37 Score=28.36 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQS----RDQLSAMEDRLLSTE 204 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~----~~ql~~meeRl~~~E 204 (382)
+..|+.|+++...|..|+.+++.+.+.. +.++..|+..+....
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999998766543 444555555554433
No 24
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=62.64 E-value=12 Score=24.80 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 168 LKRDRNVLMAEIVRLRQHQQQSRDQLS 194 (382)
Q Consensus 168 LKrd~~~L~~El~~LrQqqq~~~~ql~ 194 (382)
+++.+++..++|..|+.|...++.|+.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 455566666666666665544444443
No 25
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=60.89 E-value=21 Score=33.25 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=33.3
Q ss_pred ccCCCccCCcccchhhhhcccCCCccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 119 FANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (382)
Q Consensus 119 F~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~~g~~~e~~~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~mee 198 (382)
=.||.|.-.+++||..+.=..+.. +. .+| ....+.+||++...++.++..|.+
T Consensus 41 ~~~PdFf~~~~~Ll~~L~lph~~~--------~a------VSL-------------~erQ~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 41 SQHPEFFVEHDELIPELRIPHQPG--------DA------VSL-------------VERQVRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp ----------------------------------------CHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHhhCHHHHHhCCCCCCCC--------Cc------ccH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999887432211 11 111 112255667777777777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 016828 199 RLLSTEKKQQQMMTFLAKALKNP 221 (382)
Q Consensus 199 Rl~~~E~kQqqm~~FLak~~qnp 221 (382)
.-+..+....++..+..+++.-.
T Consensus 94 ~A~~Ne~l~~~~~~l~l~LL~a~ 116 (252)
T 3e98_A 94 VARENDRLFDKTRRLVLDLLDAT 116 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888888888777777644
No 26
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=57.45 E-value=15 Score=23.38 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLR 183 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~Lr 183 (382)
|+..||++..+|.-|+..|+
T Consensus 10 eiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 10 EIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 27
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.57 E-value=22 Score=26.11 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSR 190 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~ 190 (382)
|..+++.|..++..|..+|..|+.+...+.
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777776666665554333
No 28
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.57 E-value=48 Score=25.99 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 170 RDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (382)
Q Consensus 170 rd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQq 208 (382)
+-++.+..||.++|-.+..+..+|+..+.|.+.++....
T Consensus 24 qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 24 LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVR 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888887777777777766666665554433
No 29
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=55.04 E-value=56 Score=23.45 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
+++|-++-+.|..|-..||++.++-..|+..+|..--.|.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mK 44 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMK 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHH
Confidence 4556666677777777777777777777776666554443
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.59 E-value=74 Score=27.00 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (382)
-.++-.++++...|..++..+..+.+.++.++.....++...
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~ 108 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESS 108 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333333
No 31
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=54.40 E-value=22 Score=25.82 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSR 190 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~ 190 (382)
++.+++.|..++..|..+|..|+.+...+.
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666554443
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.38 E-value=45 Score=28.36 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
.+..+++.|..+...+..|+..|+.+......++..++..+..+..+.+.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666665555555555555554444444333
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.23 E-value=26 Score=25.15 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 171 DRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (382)
Q Consensus 171 d~~~L~~El~~LrQqqq~~~~ql~~mee 198 (382)
|..+|..|+..||++...+..++..+..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 34
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=52.32 E-value=33 Score=27.38 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (382)
.+...|..++..|+.|+..|+++...+..++..+..++..
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777778888888888777777777777766653
No 35
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=49.95 E-value=20 Score=27.83 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (382)
.|...++.|-.++.+|..|+..+++-...+..++..||+.+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777766655555555555544
No 36
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=49.00 E-value=75 Score=27.23 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
+.+++|++.+.+-..||.+||.+...++..+......+.
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445566666666666666666555554444444444443
No 37
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=48.30 E-value=50 Score=21.02 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQ 184 (382)
|+..||++..+|..|+..|+=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666655543
No 38
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=46.49 E-value=1e+02 Score=24.43 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 207 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQ 207 (382)
+..++..|+.+-..|..||..|..+...+..+|.+++.........-
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE 55 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence 56788888999999999999998888888888888888777665543
No 39
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.35 E-value=72 Score=31.65 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQ 209 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqq 209 (382)
+++.|+.+...|.+++..|.++...++.++..+.+++...+..-.+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~ 49 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRT 49 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666655543333
No 40
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.30 E-value=1.1e+02 Score=23.80 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
+..+.+|.+-......-+..|.++...+..++..+...+.
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444433222223333344444444444444444443
No 41
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=43.08 E-value=90 Score=22.37 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (382)
+-.+++.||+++..|.+|+..--.+.-.++++-..|.+-+..+
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4567889999999999999988888888888877777766543
No 42
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.66 E-value=28 Score=22.78 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
++..++.|-..+..|..|+.+|+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 578888899999999999998874
No 43
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=40.64 E-value=19 Score=32.50 Aligned_cols=63 Identities=19% Similarity=0.442 Sum_probs=48.2
Q ss_pred CCchHHH-HHHHhcCCCCCCeEEEcCCCCeEEE-eCCchhhhhh-ccCCc-CCCChhhHHhh-----hccCCc
Q 016828 46 PPPFLTK-TYEMVEDLSTDAIVSWSRTRNSFIV-WDSHQFSTTL-LPKYF-KHSNFSSFIRQ-----LNTYGF 109 (382)
Q Consensus 46 ~~~Fl~K-L~~ml~d~~~~~iIsWs~~G~sFiI-~d~~~F~~~v-Lp~~F-kh~nfsSFvRQ-----LN~YGF 109 (382)
+..|+.| +|.++=.-..+ ...|+++++.|+| .|..-+..-| +|... ..-+|+.|+.= |.+-||
T Consensus 86 ~l~fI~k~~Wk~lfgk~~d-~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 86 TSEVLSKCAFKIFLNITPN-ITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHHHSSCCCC-CBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCc-cceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 3578854 89888776554 5789999999999 7777666544 78777 67799999864 677888
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=40.57 E-value=1.1e+02 Score=27.96 Aligned_cols=12 Identities=17% Similarity=0.623 Sum_probs=7.1
Q ss_pred CCchHHHHHhhh
Q 016828 325 SVNETIWEDFMA 336 (382)
Q Consensus 325 ~~~~~~wEell~ 336 (382)
.+....+-++..
T Consensus 207 ~lppq~~~~i~~ 218 (256)
T 3na7_A 207 RLNDKIYTEVLT 218 (256)
T ss_dssp BCCHHHHHHHHH
T ss_pred eeCHHHHHHHHC
Confidence 455666666654
No 45
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=39.72 E-value=55 Score=21.77 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqq 186 (382)
+++.++.|...+..|..|+.+||.-.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 57788899999999999999888643
No 46
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=39.56 E-value=27 Score=31.74 Aligned_cols=64 Identities=16% Similarity=0.375 Sum_probs=47.1
Q ss_pred CCchHHH-HHHHhcCCCCCCeEEEcCCCCeEEE-eCCchhhhhh-ccCCcCCCChhhHHhh-----hccCCcc
Q 016828 46 PPPFLTK-TYEMVEDLSTDAIVSWSRTRNSFIV-WDSHQFSTTL-LPKYFKHSNFSSFIRQ-----LNTYGFR 110 (382)
Q Consensus 46 ~~~Fl~K-L~~ml~d~~~~~iIsWs~~G~sFiI-~d~~~F~~~v-Lp~~Fkh~nfsSFvRQ-----LN~YGF~ 110 (382)
+..|+.| +|.++=.-.. +...|+++++.|+| .|..-+..-| +|.-.+.-+|+.|+.= |.+-||.
T Consensus 83 ~l~fI~k~~Wk~lFgk~a-d~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~ 154 (200)
T 1sz7_A 83 TADVIAKVAFKMYLGITP-SITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMA 154 (200)
T ss_dssp HHHHHHHTHHHHHHSCCC-EEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCE
Confidence 3567754 8888866544 47889999999999 6776555433 7876677889999864 6778887
No 47
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=39.28 E-value=1.2e+02 Score=26.04 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLR 183 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~Lr 183 (382)
+++.+......|..++..++
T Consensus 14 ~~~~~~~~~~~l~~~l~~l~ 33 (284)
T 1c1g_A 14 DKENALDRADEAEADKKAAE 33 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 48
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=39.10 E-value=90 Score=28.14 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 016828 177 AEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (382)
Q Consensus 177 ~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~ 228 (382)
.|+..|.++...-..++.++.++++.++..-...-.-+++...+-+++.-|.
T Consensus 27 ~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~ 78 (190)
T 4emc_A 27 NENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLY 78 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHH
Confidence 3333333333333333444444444333333223333344444434444443
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=38.90 E-value=1.3e+02 Score=26.08 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLR--------------QHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~Lr--------------Qqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
..+..|+.+...|..+|..|. .+...+..++..++++++.++...+++
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544 233344444455555555555444433
No 50
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.69 E-value=1.1e+02 Score=23.93 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=18.8
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 172 RNVLMAEIVR---LRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 172 ~~~L~~El~~---LrQqqq~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
+.+|..||.. +..+...++.-+.+++.+|+..+.+.+.+.
T Consensus 16 QSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~ 58 (81)
T 1wt6_A 16 QEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLE 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555532 122333344444555555555555555544
No 51
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.49 E-value=22 Score=25.94 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQS 189 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~ 189 (382)
|+.+++.|..++..|..++..|+.+...+
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666654433
No 52
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.01 E-value=45 Score=26.35 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016828 165 LERLKRDRNVLMAEIVRLR 183 (382)
Q Consensus 165 ie~LKrd~~~L~~El~~Lr 183 (382)
++.|..++..|..+|..|+
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLS 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 53
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.74 E-value=1e+02 Score=21.10 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 016828 191 DQLSAMEDRLL 201 (382)
Q Consensus 191 ~ql~~meeRl~ 201 (382)
.++++++.++.
T Consensus 27 selqalekkla 37 (48)
T 1g6u_A 27 SELQALEKKLA 37 (48)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 54
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=35.69 E-value=1.9e+02 Score=27.00 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhhHHHh
Q 016828 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHR 234 (382)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~q~~~~~ 234 (382)
+..|++..+.+..++..|-=+..-+..++..+..+++.+...++.++.-||.+=++-.||..-+..-+.|
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~R 220 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDR 220 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3568888888888888886666677888888899999999999999999999988888887776555433
No 55
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.53 E-value=59 Score=23.86 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLR 183 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~Lr 183 (382)
.+++.|+.++..|..+|..|+
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 56
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.11 E-value=1.8e+02 Score=23.88 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (382)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~ 211 (382)
.+.|..||..|+.....+...+..+|......|.......
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~ 76 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 3446666666666666666666666666666665444433
No 57
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.70 E-value=1.6e+02 Score=22.93 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 195 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~ 195 (382)
+..|..+=.....|..|+..|+.+......+.+.
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555566666666666555555554
No 58
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.47 E-value=71 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (382)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~m 196 (382)
|..|......|..++..|+++++.+..+|+.+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666655555554443
No 59
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.38 E-value=47 Score=25.37 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQ 192 (382)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~q 192 (382)
|..|+...+.|..|+..|++++..+..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555554444433333
No 60
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.11 E-value=2.4e+02 Score=24.46 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHhhH
Q 016828 166 ERLKRDRNVLMAEIVRLRQHQQQSRDQ-------LSAMEDRLLSTEKKQQQMMTFLAKALK-NPSFFQQLAQSN 231 (382)
Q Consensus 166 e~LKrd~~~L~~El~~LrQqqq~~~~q-------l~~meeRl~~~E~kQqqm~~FLak~~q-np~Fl~ql~q~~ 231 (382)
..+......|..|+..++......... +..+.+.+..+.-....+-.-+.++-. |...|.+++.+.
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655554422 223333333333333344444444444 556666776655
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.07 E-value=1.6e+02 Score=29.72 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (382)
..++..++.+.+.+..++.+++++.+....+++.++++...+|+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 34444555555555555555554443334444433333333333
No 62
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.70 E-value=32 Score=25.44 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqq 186 (382)
|..+++.|+.++..|..|+..|+++.
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777776643
No 63
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=32.57 E-value=82 Score=22.40 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016828 189 SRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (382)
Q Consensus 189 ~~~ql~~meeRl~~~E~kQqqm~~FLak~~ 218 (382)
+-.++..+|+++..++++-.+|+..+-.++
T Consensus 15 ~~~Rl~rVE~qV~~md~KLd~l~~~~~~~l 44 (49)
T 3bj4_A 15 IGARLNRVEDKVTQLDQRLALITDMLHQLL 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888887777666544
No 64
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.45 E-value=49 Score=21.62 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
+++.++.|=..+..|..|+.+||.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567788888888888888888874
No 65
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.38 E-value=91 Score=20.74 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqq 186 (382)
++..++.|-..+..|..|+.+|+.-.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 57788888888888988888887643
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.10 E-value=2.1e+02 Score=28.73 Aligned_cols=22 Identities=27% Similarity=0.064 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRL 182 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~L 182 (382)
+..++.+..+..+.+..++...
T Consensus 468 l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 468 LTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555555555555555433
No 67
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.61 E-value=59 Score=21.35 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
+++.++.|=..+..|..|+.+||.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 567788888888888888888875
No 68
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.59 E-value=1.3e+02 Score=29.69 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 173 NVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (382)
Q Consensus 173 ~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (382)
..|..|+..|+++.......+..++.+++.+..
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555554443
No 69
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.92 E-value=2.3e+02 Score=23.17 Aligned_cols=43 Identities=9% Similarity=0.163 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 173 NVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (382)
Q Consensus 173 ~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLa 215 (382)
.+|.+|+...+++...+..++..+...+..+|+.=.-..+-|.
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555666666666666654444444433
No 70
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=29.29 E-value=1.6e+02 Score=21.08 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
|..++..|..+-..|..++..|+...+..+.+-.+-.+||.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555556666666666666666655555555555555553
No 71
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.08 E-value=48 Score=20.36 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016828 166 ERLKRDRNVLMAEIVRL 182 (382)
Q Consensus 166 e~LKrd~~~L~~El~~L 182 (382)
.+||+.+..|.+|++.|
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 34555555444444444
No 72
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.42 E-value=1.3e+02 Score=29.03 Aligned_cols=27 Identities=15% Similarity=0.152 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 178 EIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (382)
Q Consensus 178 El~~LrQqqq~~~~ql~~meeRl~~~E 204 (382)
|+.+|.........++..|+..+..++
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~ 39 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQ 39 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 333333333333333444444443333
No 73
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=28.40 E-value=68 Score=21.11 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
+++.++.|=..+..|..|+.+||.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 567888888888999999998875
No 74
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.93 E-value=70 Score=21.04 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
+++.++.|=..+..|..|+.+|+.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567788888888888888888874
No 75
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=27.89 E-value=87 Score=24.00 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (382)
++..+++|+.-++.+..=|+.|.|.....++.+..++.|+..
T Consensus 26 ID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~ 67 (72)
T 2xu6_A 26 IEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDF 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345555665555555555666665555555555555555543
No 76
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.83 E-value=3.3e+02 Score=24.47 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
+..|+..|..+......|+..|+.+.+..++++.....++.
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 45566666666677777777777777666666665555554
No 77
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=27.41 E-value=1.8e+02 Score=21.16 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQ 186 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqq 186 (382)
..+.+||.-+..|...+..|+.+.
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c 34 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSC 34 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665544
No 78
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.38 E-value=67 Score=21.12 Aligned_cols=24 Identities=25% Similarity=0.413 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
++..++.|=..+..|..|+.+||.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 567788888888888888888874
No 79
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.28 E-value=2.1e+02 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 177 AEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 177 ~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
..+..|+++.+.+..++..+++++.
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444443
No 80
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.12 E-value=63 Score=24.48 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLRQHQQQS 189 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~ 189 (382)
+.++..|......|..|...|+.+...+
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333
No 81
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=27.06 E-value=29 Score=25.92 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (382)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FL 214 (382)
...|..++.++++.|. .+++.|..++..|..+=.+|
T Consensus 14 I~~L~~~v~~~e~~Q~-------~ldq~Ld~Ie~QQ~ELe~~L 49 (64)
T 3t97_C 14 ITSLHREVEKVKLDQK-------RLDQELDFILSQQKELEDLL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555443 34444455555555554444
No 82
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=26.99 E-value=75 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
+++.++.|=..+..|..|+.+|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567778888888888888888764
No 83
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.86 E-value=2.2e+02 Score=22.04 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 175 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (382)
Q Consensus 175 L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLa 215 (382)
|...|..|+++...++.++..+...+..+.++|..+..-|.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555555555554443
No 84
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.68 E-value=1.7e+02 Score=29.85 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=34.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq---qq~~~~ql~~meeRl~~~E~kQqqm~~FL 214 (382)
.+..+++.|+.+++.+..+|..++.. ...+..++..+.+++..++....++-.-|
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888776532 22344555666666666665555544433
No 85
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.59 E-value=1.7e+02 Score=29.33 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=32.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMMT 212 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq---qq~~~~ql~~meeRl~~~E~kQqqm~~ 212 (382)
.+..+++.|+.+++.+..+|..++.. ...+..++..+.+++..++.+...+-.
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888865421 223444555555555555555444433
No 86
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.72 E-value=3.6e+02 Score=24.09 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 016828 162 DGELERLKRDRNVLMAEIVRLR 183 (382)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~Lr 183 (382)
+.+++++.+....|...+.+|+
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~ 69 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLK 69 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 87
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=25.35 E-value=83 Score=20.66 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (382)
+++.++.|-..+..|..|+.+|+.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567788888888888888888874
No 88
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.32 E-value=1.6e+02 Score=20.02 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 016828 194 SAMEDRLLSTE 204 (382)
Q Consensus 194 ~~meeRl~~~E 204 (382)
.+++..++.+|
T Consensus 23 aaleselqale 33 (48)
T 1g6u_A 23 AALESELQALE 33 (48)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 89
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.13 E-value=2.4e+02 Score=25.92 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
+...+..+|.+...|.+.|.+++.+...+..+|....+.+.
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~ 209 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLA 209 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666665555555555444443
No 90
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.96 E-value=1.1e+02 Score=25.63 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
.+.|.-||..|.|+.++...++..+....+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 445556666666666655555555444443
No 91
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=24.89 E-value=1.4e+02 Score=20.96 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 177 AEIVRLRQHQQQSRDQLSAMEDRL 200 (382)
Q Consensus 177 ~El~~LrQqqq~~~~ql~~meeRl 200 (382)
..|..|.+++..+-.+|.++|.|+
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566665555555555555543
No 92
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=24.83 E-value=2e+02 Score=20.89 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 178 EIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 212 (382)
Q Consensus 178 El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~ 212 (382)
.+.+|+|....+-.+++.++.....+|+.+..+-.
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888777766655443
No 93
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.69 E-value=95 Score=23.81 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQ 192 (382)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~q 192 (382)
|..|+.+...|..|+..|+.++..+..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444333
No 94
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.41 E-value=1e+02 Score=25.87 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=10.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~m 196 (382)
|..+++.||+|.+.+ ..|+...+.++.+|..+
T Consensus 4 l~~~~~~l~~~~~~~----~~l~~~~~~l~~~l~~~ 35 (182)
T 3kqg_A 4 LNAQIPELKSDLEKA----SALNTKIRALQGSLENM 35 (182)
T ss_dssp ---------CHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 456677777776633 33444433344444333
No 95
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.28 E-value=3.6e+02 Score=24.13 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (382)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQq 208 (382)
.+.|..||..|+.....+..++..+|.....+|....
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444455555555555555555555555444444433
No 96
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.24 E-value=68 Score=19.70 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016828 167 RLKRDRNVLMAEIVRLRQHQ 186 (382)
Q Consensus 167 ~LKrd~~~L~~El~~LrQqq 186 (382)
.|.-++.+|.+.++.|+|..
T Consensus 4 alefendaleqkiaalkqki 23 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHH
Confidence 34445555555555555543
No 97
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.71 E-value=2.4e+02 Score=22.09 Aligned_cols=26 Identities=8% Similarity=0.279 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 175 LMAEIVRLRQHQQQSRDQLSAMEDRL 200 (382)
Q Consensus 175 L~~El~~LrQqqq~~~~ql~~meeRl 200 (382)
+..++..|.++...++.++..++..+
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445554444444444444443
No 98
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.69 E-value=2.9e+02 Score=22.35 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQq 208 (382)
|..+.-.|.+....|..|..+||+.-.....++..++..+..+....+
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 445555666667777777777777666666667777766665554443
No 99
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.51 E-value=2.4e+02 Score=27.20 Aligned_cols=43 Identities=7% Similarity=0.034 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (382)
Q Consensus 168 LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (382)
|..+...|..-|.....+.+.++..+..++.+|+.++++..++
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555566666666665554433333
No 100
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.36 E-value=3e+02 Score=28.06 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQH-----------QQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq-----------qq~~~~ql~~meeRl~~~E~kQqqm~~FL 214 (382)
.+..+++.|+.+++.+..+|..++.. ...+..++..+.+++..++.+..++-.-|
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888776532 23455666666666666666655554443
No 101
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.81 E-value=3.2e+02 Score=22.43 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (382)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (382)
|..++..|+..+..|..-|-.|.|...+++..-.+...-+..+|.
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHH
Confidence 455555555555555555555555554444443333333333333
No 102
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.53 E-value=2.1e+02 Score=22.47 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (382)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~mee 198 (382)
.+..++.....+..++..|+..+.....++..++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~ 38 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKT 38 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666665555444444444333
No 103
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.25 E-value=61 Score=25.06 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 016828 168 LKRDRNVLMAEIV 180 (382)
Q Consensus 168 LKrd~~~L~~El~ 180 (382)
|..++..|..+|.
T Consensus 48 L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 48 LTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 104
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.89 E-value=2.6e+02 Score=21.87 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=27.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (382)
..+.-+..|......|..++..|..+...+..++..++..+.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777777666666666666555554
No 105
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.85 E-value=2.7e+02 Score=21.31 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=27.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (382)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (382)
.++..+++|......|+.-+++|--++..++. .|.+|+..+|.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~---KLKqRit~LE~ 46 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQ---KLKQRLTKVEK 46 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 45677788888888888888877665544433 33445555554
No 106
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=21.74 E-value=4.1e+02 Score=24.09 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhhHH
Q 016828 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNA 232 (382)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQqqm~~FLak~~qnp~Fl~ql~q~~~ 232 (382)
.+++.|+.....|..++..++.++.-....+.++..|...-. ..+ +.+..-.|+..|+.=.+
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~---e~~-----~~~a~e~~~~~LLpVlD 120 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEM---EAA-----EKYRAQSLASDLLPVLD 120 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-----HHHTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-----HHHHHHHHHHHHhHHHH
Confidence 566778888888888888888888888888888888775322 222 22233356777766544
No 107
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.72 E-value=3.4e+02 Score=22.61 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 016828 193 LSAMEDRLLSTE 204 (382)
Q Consensus 193 l~~meeRl~~~E 204 (382)
++.++..|..+.
T Consensus 73 vqeLqgEI~~Ln 84 (121)
T 3mq7_A 73 VEELEGEITTLN 84 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 108
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.42 E-value=2.7e+02 Score=21.84 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016828 165 LERLKRDRNVLMAEIVRLRQH 185 (382)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQq 185 (382)
.+.|......+..||..|++.
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~e 60 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKE 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 109
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.18 E-value=3e+02 Score=25.06 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCC
Q 016828 50 LTKTYEMVEDLSTDA 64 (382)
Q Consensus 50 l~KL~~ml~d~~~~~ 64 (382)
++++..||+-...+.
T Consensus 22 ~RrtLq~LQPSA~~~ 36 (209)
T 2wvr_A 22 PRRTLKMIQPSASGS 36 (209)
T ss_dssp ---------------
T ss_pred hhhhHHHhCccccCc
Confidence 556666666555543
No 110
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.03 E-value=2.5e+02 Score=27.80 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016828 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 207 (382)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kQ 207 (382)
...|..|+..|+++...+..++..+...+..++.+.
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777666665443
Done!