BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016829
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HV6|A Chain A, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV6|B Chain B, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV7|A Chain A, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|B Chain B, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|C Chain C, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|D Chain D, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|E Chain E, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|F Chain F, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|G Chain G, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|H Chain H, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
Length = 323
Score = 311 bits (798), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 216/309 (69%), Gaps = 2/309 (0%)
Query: 71 PVPQSQKVPTITAPFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISD 130
P S++ P T F P K+I + D+ + S +++GF++ L+E ++G K++
Sbjct: 9 PPDSSEEAPPATQ--NFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTF 66
Query: 131 PCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPN 190
S+ I +V++LN L +W +E PP+ Q +R+GN AYRTW+++L + +E+L+ +P
Sbjct: 67 EYRVSEAIEKLVALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPT 126
Query: 191 ELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFA 250
L AAV E+ Y +S GNS+RIDYGTGHE FA++L CL ++GV++ +D A+V +VF
Sbjct: 127 HLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFN 186
Query: 251 KYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDN 310
+YLE+MRKLQ Y +EPAGS GVWGLDD+ FLPFI+GSSQLIDH Y++P+ ++ ++
Sbjct: 187 RYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNE 246
Query: 311 FADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIM 370
+YM+L CI F+ ++K G FAEHS L +IS VP+W+KVN GL++MYKAE LEK P++
Sbjct: 247 NHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVI 306
Query: 371 QHFLFGSLI 379
QHF FGSL+
Sbjct: 307 QHFKFGSLL 315
>pdb|2G62|A Chain A, Crystal Structure Of Human Ptpa
Length = 325
Score = 310 bits (794), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 210/293 (71%)
Query: 87 FQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILN 146
F P K+I + D+ + S +++GF++ L+E ++G K++ S+ I +V++LN
Sbjct: 25 FIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLVALLN 84
Query: 147 ELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDS 206
L +W +E PP+ Q +R+GN AYRTW+++L + +E+L+ +P L AAV E+ Y +S
Sbjct: 85 TLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKES 144
Query: 207 FGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLE 266
GNS+RIDYGTGHE FA++L CL ++GV++ +D A+V +VF +YLE+MRKLQ Y +E
Sbjct: 145 VGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRME 204
Query: 267 PAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKK 326
PAGS GVWGLDD+ FLPFI+GSSQLIDH Y++P+ ++ ++ +YM+L CI F+ +
Sbjct: 205 PAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITE 264
Query: 327 VKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLI 379
+K G FAEHS L +IS VP+W+KVN GL++MYKAE LEK P++QHF FGSL+
Sbjct: 265 MKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLL 317
>pdb|2IXM|A Chain A, Structure Of Human Ptpa
Length = 303
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 210/293 (71%)
Query: 87 FQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILN 146
F P K+I + D+ + S +++GF++ L+E ++G K++ S+ I ++++LN
Sbjct: 4 FIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLLALLN 63
Query: 147 ELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDS 206
L +W +E PP+ Q +R+GN AYRTW+++L + +E+L+ +P L AAV E+ Y +S
Sbjct: 64 TLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKES 123
Query: 207 FGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLE 266
GNS+RIDYGTGHE FA++L CL ++GV++ +D A+V +VF +YLE+MRKLQ Y +E
Sbjct: 124 VGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRME 183
Query: 267 PAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKK 326
PAGS GVWGLDD+ FLPFI+GSSQLIDH Y++P+ ++ ++ +YM+L CI F+ +
Sbjct: 184 PAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITE 243
Query: 327 VKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLI 379
+K G FAEHS L +IS VP+W+KVN GL++MYKAE LEK P++QHF FGSL+
Sbjct: 244 MKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLL 296
>pdb|2IXN|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa2
Ptpa2
pdb|2IXN|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa2
Ptpa2
Length = 310
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 198/297 (66%), Gaps = 9/297 (3%)
Query: 90 PSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKIS---DPCHESQTINTIVSILN 146
P K++ +PDD++ + +S T +F F++ L+ES++GH+ S +P ES IN+++++L+
Sbjct: 3 PEKRLLTPDDMKLWEESPTRAHFTKFIIDLAESVKGHENSQYKEPISES--INSMMNLLS 60
Query: 147 ELLQWAEEIPPLQQ--SARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFN 204
++ ++ P ++ S+R+G + +R ++ ++ NS ++ P+ + ++ Y +
Sbjct: 61 QIKDITQKHPVIKDADSSRFGKVEFRDFYDEVSRNSRKILRSEFPSLTDEQLEQLSIYLD 120
Query: 205 DSFGNSSRIDYGTGHETNFASWLYCLARMGVIK-EEDYHAVVSRVFAKYLELMRKLQLVY 263
+S+GN RIDYG+GHE NF LY L G+ D +V +VF +YL++MR L+ Y
Sbjct: 121 ESWGNKRRIDYGSGHELNFMCLLYGLYSYGIFNLSNDSTNLVLKVFIEYLKIMRILETKY 180
Query: 264 CLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAF 323
LEPAGSHGVWGLDDYHFLPF+FG+ QL HK++KP SIHN ++++ FA Y+Y CIAF
Sbjct: 181 WLEPAGSHGVWGLDDYHFLPFLFGAFQLTTHKHLKPISIHNNELVEMFAHRYLYFGCIAF 240
Query: 324 VKKVKKGL-FAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLI 379
+ KVK HSP+LDDISGV W+KV G++KMYKAEVL K+PIMQHF F +
Sbjct: 241 INKVKSSASLRWHSPMLDDISGVKTWSKVAEGMIKMYKAEVLSKLPIMQHFYFSEFL 297
>pdb|2IXP|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|C Chain C, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|D Chain D, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
Length = 323
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Query: 138 INTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVI 197
+N ++ +L++L +E PPL RYGNLA R WH +L + + LP+E V
Sbjct: 67 VNGLMGVLDKLAHLIDETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEVVP 126
Query: 198 EIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMR 257
E+ Y +SFG+S+R+DYGTGHE +F + + L +G+ A V +F KY +MR
Sbjct: 127 ELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMFPHMR-GADVFLLFNKYYTIMR 185
Query: 258 KLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSS--QLIDHKY-MKPKSIHNQDILDNFADE 314
+L L Y LEPAGSHGVWGLDD+ L +I GSS QL+D + ++P+ I ++ ++ + D
Sbjct: 186 RLILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLDAQAPLQPREILDKSLVREYKDT 245
Query: 315 YMYLSCIAFVKKVKKGLFAEHSPLLDDIS-GVPNWNKVNSGLLKMYKAEVLEKVPIMQHF 373
Y I F+ +VK G F EHSP+L DI+ VP W+KV GLLKMY EVL+K P++QHF
Sbjct: 246 NFYCQGINFINEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEVLKKFPVVQHF 305
Query: 374 LFGS 377
FG+
Sbjct: 306 WFGT 309
>pdb|2IXO|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1
pdb|2IXO|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1
Length = 323
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 152/244 (62%), Gaps = 5/244 (2%)
Query: 138 INTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVI 197
+N ++ +L++L +E PPL RYGNLA R WH +L + + LP+E V
Sbjct: 67 VNGLMGVLDKLAHLIDETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEVVP 126
Query: 198 EIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMR 257
E+ Y +SFG+S+R+DYGTGHE +F + + L +G+ A V +F KY +MR
Sbjct: 127 ELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMFPHHR-GADVFLLFNKYYTIMR 185
Query: 258 KLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSS--QLIDHKY-MKPKSIHNQDILDNFADE 314
+L L Y LEPAGSHGVWGLDD+ L +I GSS QL+D + ++P+ I ++ ++ + D
Sbjct: 186 RLILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLDAQAPLQPREILDKSLVREYKDT 245
Query: 315 YMYLSCIAFVKKVKKGLFAEHSPLLDDIS-GVPNWNKVNSGLLKMYKAEVLEKVPIMQHF 373
Y I F+ +VK G F EHSP+L DI+ VP W+KV GLLKMY EV +K P++QHF
Sbjct: 246 NFYCQGINFINEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEVEKKFPVVQHF 305
Query: 374 LFGS 377
FG+
Sbjct: 306 WFGT 309
>pdb|2E3M|A Chain A, Crystal Structure Of Cert Start Domain
pdb|2E3N|A Chain A, Crystal Structure Of Cert Start Domain In Complex With C6-
Ceramide (P212121)
pdb|2E3O|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C16- Ceramide (P212121)
pdb|2E3P|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C16- Cearmide (P1)
pdb|2E3P|B Chain B, Crystal Structure Of Cert Start Domain In Complex With
C16- Cearmide (P1)
pdb|2E3Q|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (p212121)
pdb|2E3R|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (P1)
pdb|2E3R|B Chain B, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (P1)
pdb|2E3S|A Chain A, Crystal Structure Of Cert Start Domain Co-Crystallized
With C24-Ceramide (P21)
pdb|2Z9Y|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C10- Diacylglycerol
pdb|3H3Q|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-13
pdb|3H3Q|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-13
pdb|3H3R|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-14
pdb|3H3R|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-14
pdb|3H3S|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-15
pdb|3H3S|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-15
pdb|3H3T|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-16
pdb|3H3T|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-16
Length = 255
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 312 ADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWN-KVNSGLLKMYKAEVLE 365
D + + FV+KV++ + + L D+ G NW V G +K+Y+ EV E
Sbjct: 13 GDAFSSVGTHRFVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEE 67
>pdb|2Z9Z|A Chain A, Crystal Structure Of Cert Start Domain(N504a Mutant), In
Complex With C10-Diacylglycerol
Length = 255
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 312 ADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWN-KVNSGLLKMYKAEVLE 365
D + + FV+KV++ + + L D+ G NW V G +K+Y+ EV E
Sbjct: 13 GDAFSSVGTHRFVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEE 67
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 85 FEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSI 144
E+ KKI P+ I I+ DT K + E+I + DP + +T+N
Sbjct: 2054 LEWADIRKKIMEPNFITSIINYDTKK---MMTPKIREAITKGYLEDPGFDYETVNRASKA 2110
Query: 145 LNELLQWA 152
L++WA
Sbjct: 2111 CGPLVKWA 2118
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 98 DDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCH-ESQTINTIVSILNELLQWAE 153
D ++ I V ALSE H S+ ++Q+IN +++ LNE +WA+
Sbjct: 163 DTLKDLISDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSINKLLTALNECTEWAQ 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,522,691
Number of Sequences: 62578
Number of extensions: 532090
Number of successful extensions: 915
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 18
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)