Query 016829
Match_columns 382
No_of_seqs 143 out of 357
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03095 PTPA: Phosphotyrosyl 100.0 9E-133 2E-137 972.5 22.9 293 89-382 1-295 (299)
2 KOG2867 Phosphotyrosyl phospha 100.0 3E-127 7E-132 938.3 22.2 301 82-382 9-309 (367)
3 cd04087 PTPA Phosphotyrosyl ph 100.0 6E-123 1E-127 889.2 25.5 266 111-376 1-266 (266)
4 COG5057 LAG1 Phosphotyrosyl ph 100.0 7E-118 2E-122 855.1 20.5 300 83-382 5-305 (353)
5 PF04135 Nop10p: Nucleolar RNA 72.2 1.9 4.1E-05 33.0 1.1 19 20-40 18-36 (53)
6 COG3657 Uncharacterized protei 66.7 11 0.00024 32.4 4.6 14 211-224 53-66 (100)
7 PRK13130 H/ACA RNA-protein com 62.7 5.4 0.00012 30.9 1.8 21 19-41 17-37 (56)
8 COG2260 Predicted Zn-ribbon RN 55.6 7.9 0.00017 30.4 1.7 20 20-41 18-37 (59)
9 PF04915 DltD_N: DltD N-termin 44.1 6.5 0.00014 31.1 -0.4 25 276-301 25-49 (62)
10 PRK15410 DgsA anti-repressor M 42.3 50 0.0011 32.8 5.3 106 134-272 143-251 (260)
11 cd00454 Trunc_globin Truncated 36.9 2.4E+02 0.0052 23.2 8.2 59 168-231 15-86 (116)
12 PF02251 PA28_alpha: Proteasom 36.8 37 0.0008 26.8 2.8 33 169-205 9-41 (64)
13 PF08090 Enterotoxin_HS1: Heat 36.7 21 0.00044 25.1 1.2 17 19-35 19-35 (36)
14 PF05752 Calici_MSP: Calicivir 35.9 39 0.00084 31.6 3.3 30 24-58 129-158 (167)
15 PRK11027 hypothetical protein; 33.6 38 0.00083 29.7 2.7 54 216-279 53-107 (112)
16 PRK15322 invasion protein OrgB 32.1 66 0.0014 31.1 4.2 54 144-219 95-148 (210)
17 COG3085 Uncharacterized protei 29.4 46 0.00099 29.0 2.4 55 217-280 54-108 (112)
18 PF09297 zf-NADH-PPase: NADH p 27.8 20 0.00044 24.0 0.0 13 19-31 3-15 (32)
19 PF08920 SF3b1: Splicing facto 26.2 24 0.00053 32.1 0.3 17 42-58 104-120 (144)
20 TIGR02481 hemeryth_dom hemeryt 23.5 4.3E+02 0.0094 22.0 7.4 73 108-189 16-93 (126)
21 PF11663 Toxin_YhaV: Toxin wit 22.4 98 0.0021 28.3 3.3 61 110-174 6-74 (140)
22 cd02986 DLP Dim1 family, Dim1- 21.5 34 0.00075 29.9 0.3 13 208-220 78-90 (114)
23 PRK04136 rpl40e 50S ribosomal 20.3 50 0.0011 25.0 0.9 12 16-27 25-36 (48)
No 1
>PF03095 PTPA: Phosphotyrosyl phosphate activator (PTPA) protein; InterPro: IPR004327 Phosphotyrosyl phosphatase activator (PTPA) proteins stimulate the phosphotyrosyl phosphatase (PTPase) activity of the dimeric form of protein phosphatase 2A (PP2A). PTPase activity in PP2A (in vitro) is relatively low when compared to the better recognised phosphoserine/ threonine protein phosphorylase activity. The specific biological role of PTPA is unknown, Basal expression of PTPA depends on the activity of a ubiquitous transcription factor, Yin Yang 1 (YY1). The tumour suppressor protein p53 can inhibit PTPA expression through an unknown mechanism that negatively controls YY1 [].; GO: 0019211 phosphatase activator activity; PDB: 2HV7_H 2HV6_A 2IXM_A 2G62_A 2IXN_B 2IXO_B 2IXP_B.
Probab=100.00 E-value=8.8e-133 Score=972.53 Aligned_cols=293 Identities=56% Similarity=1.039 Sum_probs=275.7
Q ss_pred cccccccCcccchhhccCHhHHHHHHHHHHHHhhccCccCC-CCCCCcHHHHHHHHHHHHHHHHHHhCCCCCC-CCCccc
Q 016829 89 TPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKIS-DPCHESQTINTIVSILNELLQWAEEIPPLQQ-SARYGN 166 (382)
Q Consensus 89 ~P~KrI~~~~Dl~~f~~S~ay~~i~~FI~~ln~sV~g~~~~-~~~~~S~~v~~ll~iL~~L~~~ide~PP~~~-p~RFGN 166 (382)
.|+|||.+++||++|++|+||++|++||++||+||+|++++ +..+.|++|++|+++|++|++||+|+||+++ |+||||
T Consensus 1 ~P~KrI~~~~D~~~f~~S~Ay~~i~~FI~~l~~sV~g~~~~~~~~~~S~~v~~ll~iL~~l~~~i~e~PP~~~~p~RFGN 80 (299)
T PF03095_consen 1 TPVKRILSPEDMEKFKRSQAYADIIGFIQNLNESVKGKKLSTDDYPVSENVQKLLDILDTLEQWIDEIPPVDQGPSRFGN 80 (299)
T ss_dssp --EE---SCCHHHHHHTSHHHHHHHHHHHHHHHHHTT-STTTSTSSSSHHHHHHHHHHHHHHHHHHTS---SS-STTSS-
T ss_pred CCcceECCHhHHHHHcCCHHHHHHHHHHHHHHHHccCCCCCCcccccChHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 49999999999999999999999999999999999999999 8899999999999999999999999999998 999999
Q ss_pred hHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccccCChhHHHHHHHHHHHHHhCCCCcccccchhh
Q 016829 167 LAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVS 246 (382)
Q Consensus 167 ~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRIDYGTGHELsFl~fL~~L~klgil~~~d~~a~vL 246 (382)
+|||+|++||++++++|+++++|++.+++++||..||.+||||+|||||||||||||+||||||+|+|+++++|..++||
T Consensus 81 ~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~~L~~lg~l~~~d~~a~vL 160 (299)
T PF03095_consen 81 KAFRTWHDKLEEEAPSLLEDILPSSLCGAIIELSYYLLNSFGNSTRIDYGTGHELSFLAFLCCLFKLGILTEEDYPALVL 160 (299)
T ss_dssp THHHHHHHHHHHHHHHHHHHHSTGGGGGGHHHHHHHHHTSSSBTTTTEEEHHHHHHHHHHHHHHHHTTSSTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHhCcCCCeeeecCcHHHHHHHHHHHHHHHcCCCCccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCCCccCCcccchhhhhccccccCCCCCCCCCccchhhhhhccCCCchHHHHHHHHH
Q 016829 247 RVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKK 326 (382)
Q Consensus 247 ~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyqfLPFifGSAQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I~fI~~ 326 (382)
+||.|||++||+||++|+|||||||||||||||||||||||||| ++|+.++|++|+|+++|++|+++||||+||+||++
T Consensus 161 ~vF~~Yl~l~R~Lq~~Y~LEPAGSHGVWGLDDy~fLPfi~GsaQ-~~~~~~~P~~i~~~~~v~~~~~~yly~~~I~fI~~ 239 (299)
T PF03095_consen 161 RVFNRYLELVRRLQSTYRLEPAGSHGVWGLDDYQFLPFIFGSAQ-LDHPPIKPKSILDPDIVEEYRDDYLYLDCIDFINK 239 (299)
T ss_dssp THHHHHHHHHHHHHHHCT-EECSCCCCCSSSSS-SHHHHHHHHH-TTTSSGGGGGGGSHHHHHHHTTT-HHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHheeeccCCCCCCCccccceeecccccccc-ccCCCCChHHhcCHHHHHHhcccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred hccccccccChhhhhccCCCChhhhhHHHHHHHHHHhcCCCcccccccccccccCC
Q 016829 327 VKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE 382 (382)
Q Consensus 327 vK~GpF~EHSpmL~dIS~V~~W~KVn~GLiKMY~aEVL~KfPVvQHF~FGsll~~~ 382 (382)
+|+|||+||||||||||+|++|+|||+||||||+||||+||||||||+||+||+|+
T Consensus 240 ~K~gpf~ehSp~L~~Is~v~~W~KV~~GliKMY~~EVL~KfpVvQHf~FG~ll~~~ 295 (299)
T PF03095_consen 240 VKTGPFREHSPMLWDISGVPSWSKVNSGLIKMYKAEVLGKFPVVQHFWFGSLLPFD 295 (299)
T ss_dssp HTTS-HHHHSHHHHHHTTSSSHHHHHHHHHHHHHHHTTT-HHHHTTSEBBSSSBSS
T ss_pred hCCCcHHHHhHHHHhhhcCCCCcchhhHHHHHHHHHHhhcchhhhhhhhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999995
No 2
>KOG2867 consensus Phosphotyrosyl phosphatase activator [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-127 Score=938.34 Aligned_cols=301 Identities=52% Similarity=0.923 Sum_probs=295.5
Q ss_pred CCCCccccccccccCcccchhhccCHhHHHHHHHHHHHHhhccCccCCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 016829 82 TAPFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQS 161 (382)
Q Consensus 82 ~~~~~f~~P~KrI~~~~Dl~~f~~S~ay~~i~~FI~~ln~sV~g~~~~~~~~~S~~v~~ll~iL~~L~~~ide~PP~~~p 161 (382)
.+...|..|+|||.+.+||..|++|+||++|++||..+|++|+|.+.+...++|+.|+++++|||+|++||+|+||++++
T Consensus 9 ~~~~~~~~PvKrI~~~~Dm~~w~~S~Ay~~i~~fi~~ls~~I~g~~~~~~~p~s~~v~~l~~ild~l~~~i~e~P~~~~~ 88 (367)
T KOG2867|consen 9 FASASFQTPVKRIQSLEDMKDWVESRAYARIIGFINDLSESIKGHRNTYSFPISEQVKRLMDILDQLDHIIDETPPIDGP 88 (367)
T ss_pred chhhhcCCcHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHHHHHHHcCCCCCCh
Confidence 35678899999999999999999999999999999999999999777777788999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccccCChhHHHHHHHHHHHHHhCCCCcccc
Q 016829 162 ARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDY 241 (382)
Q Consensus 162 ~RFGN~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRIDYGTGHELsFl~fL~~L~klgil~~~d~ 241 (382)
+||||+|||+||++|.+++++|+++++|+..+++++||..||.+||||++||||||||||||+||||||+++|+|+.+|+
T Consensus 89 ~Rfgn~AyR~w~~kl~~~~~~ll~~~~p~~~~~~v~El~~Yl~~SFGNs~RIDYGtGHEL~Fl~~L~~L~~~Gil~~~D~ 168 (367)
T KOG2867|consen 89 QRFGNKAYRTWYEKLYEELPKLLDEALPSLKHEAVNELGQYLTESFGNSTRIDYGTGHELNFLFFLCALFKLGILDENDY 168 (367)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCcccccccchHHHHHHHHHHHHHHccCcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHhccccCCCCCCccCCcccchhhhhccccccCCCCCCCCCccchhhhhhccCCCchHHHH
Q 016829 242 HAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCI 321 (382)
Q Consensus 242 ~a~vL~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyqfLPFifGSAQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I 321 (382)
.|+||+||+|||++||+||.||+|||||||||||||||||||||||||||+++++++|++|+|+++|++|+++|||++||
T Consensus 169 ~a~vl~lF~kYlev~R~Lq~tY~lEPAGShGvwgLDD~~FlPfifGsaQL~~~~~~~P~~~~d~~iv~~~~~~ymyl~cI 248 (367)
T KOG2867|consen 169 VALVLRLFNKYLEVMRRLQTTYNLEPAGSHGVWGLDDFQFLPFIFGSAQLCDHKPLKPKSILDEKIVEEYRDDYMYLSCI 248 (367)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccccchhhhhhhHHHHhcCCCCChhhhccHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccChhhhhccCCCChhhhhHHHHHHHHHHhcCCCcccccccccccccCC
Q 016829 322 AFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE 382 (382)
Q Consensus 322 ~fI~~vK~GpF~EHSpmL~dIS~V~~W~KVn~GLiKMY~aEVL~KfPVvQHF~FGsll~~~ 382 (382)
+||+++|+|||+||||||||||+||+|+|||+||||||++|||+||||||||+||+||+|+
T Consensus 249 ~fi~k~K~G~f~eHS~~L~~IsaVp~WsKVn~GlikMY~~eVL~k~pvvQHf~FGel~~~~ 309 (367)
T KOG2867|consen 249 DFINKVKTGPFAEHSPQLWSISAVPTWSKVNRGLIKMYDVEVLSKFPVVQHFIFGELMPFE 309 (367)
T ss_pred HHHHHhcCCchhhhchHHhhhhcCCcHHHHHHHHHHHHHHHHHHhcchHHHHHHhhccccC
Confidence 9999999999999999999999999999999999999999999999999999999999995
No 3
>cd04087 PTPA Phosphotyrosyl phosphatase activator (PTPA) is also known as protein phosphatase 2A (PP2A) phosphatase activator. PTPA is an essential, well conserved protein that stimulates the tyrosyl phosphatase activity of PP2A. It also reactivates the serine/threonine phosphatase activity of an inactive form of PP2A. Together, PTPA and PP2A constitute an ATPase. It has been suggested that PTPA alters the relative specificity of PP2A from phosphoserine/phosphothreonine substrates to phosphotyrosine substrates in an ATP-hydrolysis-dependent manner. Basal expression of PTPA is controlled by the transcription factor Yin Yang1 (YY1). PTPA has been suggested to play a role in the insertion of metals to the PP2A catalytic subunit (PP2Ac) active site, to act as a chaperone, and more recently, to have peptidyl prolyl cis/trans isomerase activity that specifically targets human PP2Ac.
Probab=100.00 E-value=5.6e-123 Score=889.17 Aligned_cols=266 Identities=59% Similarity=1.064 Sum_probs=263.8
Q ss_pred HHHHHHHHHHhhccCccCCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchHHHHHHHHHHHhHHHHHHhhCCc
Q 016829 111 NFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPN 190 (382)
Q Consensus 111 ~i~~FI~~ln~sV~g~~~~~~~~~S~~v~~ll~iL~~L~~~ide~PP~~~p~RFGN~AFR~W~~~l~~~~~~Ll~~~lp~ 190 (382)
+|++||+++|++|+|+++++..+.|++|++|+++|++|++||+|+||+++++||||+|||+|+++|++++++|+++++|+
T Consensus 1 ~i~~fI~~l~~sv~g~~~~~~~~~s~~i~~l~~il~~l~~~i~e~PP~~~~~RfGN~afR~w~~~l~~~~~~ll~~~l~~ 80 (266)
T cd04087 1 DIIAFIQDLSESVQGKPLSDEIPVSENIEKLVEILDQLDALIDETPPIDQPSRFGNKAFRTWHDKLEEELPSLLEELLPE 80 (266)
T ss_pred CHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhccCCCcccccCChhHHHHHHHHHHHHHhCCCCcccccchhhhhhHHHHHHHHHHHHHhccccCCC
Q 016829 191 ELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGS 270 (382)
Q Consensus 191 ~~~~~~~EL~~YL~~SFGn~tRIDYGTGHELsFl~fL~~L~klgil~~~d~~a~vL~vF~~Yl~lvR~Lq~~Y~LEPAGS 270 (382)
+.+++++||..||.+||||++||||||||||||+||||||+|+|+++++|..++||+||.||+++|||||.+|+||||||
T Consensus 81 ~~~~~~~EL~~Yl~~SFGn~~RiDYGTGHEL~Fl~fL~~L~~lgil~~~d~~~~vL~vF~~Yl~l~R~Lq~~Y~LEPAGS 160 (266)
T cd04087 81 ELDEAVNELSYYLLESFGNSTRIDYGTGHELNFLAFLCCLFKLGILTEEDYGAIVLRVFNRYLELVRRLQLTYRLEPAGS 160 (266)
T ss_pred hhhHHHHHHHHHHHhccCCCcccccCCchHHHHHHHHHHHHHCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCcccchhhhhccccccCCCCCCCCCccchhhhhhccCCCchHHHHHHHHHhccccccccChhhhhccCCCChhh
Q 016829 271 HGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVKKVKKGLFAEHSPLLDDISGVPNWNK 350 (382)
Q Consensus 271 HGVWGLDDyqfLPFifGSAQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I~fI~~vK~GpF~EHSpmL~dIS~V~~W~K 350 (382)
|||||||||||||||||||||+++++++|++|+|+++|++|+++||||+||+||+++|+|||+||||||||||+|++|+|
T Consensus 161 HGvWGLDDy~fLPfi~GsaQL~~~~~~~P~~i~~~~~v~~~~~~ymy~~~I~fI~~vK~gpf~ehSp~L~dIs~v~~W~K 240 (266)
T cd04087 161 HGVWGLDDYQFLPFIFGSAQLINHKPLKPKSILDPEIVEEYKKDYLYLSCIAFINKVKTGPFAEHSPMLWDISGVPTWSK 240 (266)
T ss_pred CCCCcccccccchhhhhHHHhccCCCCCchhhcCHHHHHHhhhcccHHHHHHHHHHcCCCCccccCHHHHHHhcCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCccccccccc
Q 016829 351 VNSGLLKMYKAEVLEKVPIMQHFLFG 376 (382)
Q Consensus 351 Vn~GLiKMY~aEVL~KfPVvQHF~FG 376 (382)
||+||+|||++|||+||||||||+||
T Consensus 241 v~~Gl~KMY~~EVL~KfpvvQHf~FG 266 (266)
T cd04087 241 VNQGLIKMYKAEVLSKFPVVQHFLFG 266 (266)
T ss_pred HHHHHHHHHHHHHccccccccccccC
Confidence 99999999999999999999999998
No 4
>COG5057 LAG1 Phosphotyrosyl phosphatase activator [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-118 Score=855.06 Aligned_cols=300 Identities=46% Similarity=0.872 Sum_probs=294.3
Q ss_pred CCCccccccccccCcccchhhccCHhHHHHHHHHHHHHhhccCccCCCC-CCCcHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 016829 83 APFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDP-CHESQTINTIVSILNELLQWAEEIPPLQQS 161 (382)
Q Consensus 83 ~~~~f~~P~KrI~~~~Dl~~f~~S~ay~~i~~FI~~ln~sV~g~~~~~~-~~~S~~v~~ll~iL~~L~~~ide~PP~~~p 161 (382)
...+|..|+|||.+.+||..|+.|.||++|..||..|++||+|+..++. .+.|..|+.++++|+++.++++|+||++++
T Consensus 5 e~~~f~~P~krild~~d~~~f~es~Ay~ri~~fi~~l~~sik~~~~~d~~~~~Sssv~~m~~vL~ri~~I~qe~P~~~~~ 84 (353)
T COG5057 5 EHATFSTPVKRILDMKDMKDFVESEAYARIYNFILDLDESIKGCSDSDYHSEQSSSVNHMMNVLDRIKEITQETPPIPGP 84 (353)
T ss_pred ccccccCcHHHhccchhhhHhhhhhHHHHHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 4567999999999999999999999999999999999999999999875 457888999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccccCChhHHHHHHHHHHHHHhCCCCcccc
Q 016829 162 ARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDY 241 (382)
Q Consensus 162 ~RFGN~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRIDYGTGHELsFl~fL~~L~klgil~~~d~ 241 (382)
+||||+|||+||++|.++++.++++.+|+..++++.||..||.|||||++||||||||||||+|||++|+.+|+|+.+|+
T Consensus 85 ~RfGN~Afr~~~~kl~~~~~q~~~~~~p~~~~ea~~el~~Yl~~SfGN~~RiDYGtGHELnFm~~l~~L~~lGif~~~d~ 164 (353)
T COG5057 85 QRFGNPAFRTWHDKLYDTYPQILQEMLPSEYHEAVPELQYYLRNSFGNSIRIDYGTGHELNFMCYLYALYCLGIFGIADY 164 (353)
T ss_pred hhhcChHHHHHHHHHHhhhHHHHHHhccchhhHHHHHHHHHHHhccCceeeeccCCccchhHHHHHHHHHHccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHhccccCCCCCCccCCcccchhhhhccccccCCCCCCCCCccchhhhhhccCCCchHHHH
Q 016829 242 HAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCI 321 (382)
Q Consensus 242 ~a~vL~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyqfLPFifGSAQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I 321 (382)
.|+|++||.+|+++||.||.+|+|||||||||||||||||||||||||||+++++++|++|+|+++|++|+++||||+||
T Consensus 165 ~a~V~~ifvkY~eimR~Li~~Y~LEPAGSHGVWGLDD~~fLpflfGssQl~~~~~lkP~~i~~~elv~~~~~s~~Yf~~I 244 (353)
T COG5057 165 GALVFTIFVKYLEIMRLLITKYTLEPAGSHGVWGLDDYFFLPFLFGSSQLCNHKPLKPREIRDKELVEEYADSNLYFGAI 244 (353)
T ss_pred cceehhhHHHHHHHHHHHHHheecccCccCCcccccccchhhhhcchHHHhccCCCCchhhcCHHHHHHhhhcceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccChhhhhccCCCChhhhhHHHHHHHHHHhcCCCcccccccccccccCC
Q 016829 322 AFVKKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE 382 (382)
Q Consensus 322 ~fI~~vK~GpF~EHSpmL~dIS~V~~W~KVn~GLiKMY~aEVL~KfPVvQHF~FGsll~~~ 382 (382)
.|||++|.|+|+||||||||||+|++|+|||+||||||++|||+|+||||||+||++|||+
T Consensus 245 ~FiN~~K~g~~~~HSPiL~DIs~Vk~WSKVn~GmIKMY~~EVL~K~PV~QHF~Fg~~~P~~ 305 (353)
T COG5057 245 NFINEVKLGPFREHSPILYDISAVKTWSKVNEGMIKMYDVEVLSKLPVVQHFIFGEFLPKD 305 (353)
T ss_pred ehhhhcccCcccccChhhhhhhccccHHHHHHHHHHHHHHHHhhccchhhhhhhcccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 5
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=72.20 E-value=1.9 Score=33.04 Aligned_cols=19 Identities=42% Similarity=0.929 Sum_probs=15.6
Q ss_pred cccccCCCCccCCCCCCCCCC
Q 016829 20 KCCAKCGGPTTFPPPPKSLYS 40 (382)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~ 40 (382)
..|..||++|..+-|| -||
T Consensus 18 ~~cp~cG~~T~~ahPa--RFS 36 (53)
T PF04135_consen 18 DKCPPCGGPTESAHPA--RFS 36 (53)
T ss_dssp SBBTTTSSBSEESSSS--SS-
T ss_pred CccCCCCCCCcCCcCC--CCC
Confidence 4799999999998888 554
No 6
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.71 E-value=11 Score=32.35 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=11.8
Q ss_pred cccccCChhHHHHH
Q 016829 211 SRIDYGTGHETNFA 224 (382)
Q Consensus 211 tRIDYGTGHELsFl 224 (382)
.|||||+|+-.-|.
T Consensus 53 LRId~GpGyRvY~~ 66 (100)
T COG3657 53 LRIDHGPGYRVYFQ 66 (100)
T ss_pred heeccCCceEEEEE
Confidence 59999999987664
No 7
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=62.68 E-value=5.4 Score=30.89 Aligned_cols=21 Identities=43% Similarity=0.941 Sum_probs=17.4
Q ss_pred CcccccCCCCccCCCCCCCCCCC
Q 016829 19 PKCCAKCGGPTTFPPPPKSLYSD 41 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~ 41 (382)
...|..||++|..+-|| -||-
T Consensus 17 k~~CP~CG~~t~~~~P~--rfSp 37 (56)
T PRK13130 17 KEICPVCGGKTKNPHPP--RFSP 37 (56)
T ss_pred cccCcCCCCCCCCCCCC--CCCC
Confidence 67899999999998888 5553
No 8
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=55.63 E-value=7.9 Score=30.38 Aligned_cols=20 Identities=45% Similarity=1.021 Sum_probs=16.7
Q ss_pred cccccCCCCccCCCCCCCCCCC
Q 016829 20 KCCAKCGGPTTFPPPPKSLYSD 41 (382)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~ 41 (382)
..|..|||.|-.|-|| -||-
T Consensus 18 e~Cp~CG~~t~~~~Pp--rFSP 37 (59)
T COG2260 18 EKCPVCGGDTKVPHPP--RFSP 37 (59)
T ss_pred ccCCCCCCccccCCCC--CCCc
Confidence 5799999999999888 6653
No 9
>PF04915 DltD_N: DltD N-terminal region; InterPro: IPR006999 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the N-terminal region of DltD.; PDB: 3BMA_C.
Probab=44.06 E-value=6.5 Score=31.06 Aligned_cols=25 Identities=36% Similarity=0.721 Sum_probs=16.3
Q ss_pred CCcccchhhhhccccccCCCCCCCCC
Q 016829 276 LDDYHFLPFIFGSSQLIDHKYMKPKS 301 (382)
Q Consensus 276 LDDyqfLPFifGSAQL~~~~~~~P~~ 301 (382)
|.|..++|| ||||.|..-+.+.|.-
T Consensus 25 l~~~~yvPf-yGSSEl~r~D~~HPsv 49 (62)
T PF04915_consen 25 LKDPKYVPF-YGSSELSRFDPFHPSV 49 (62)
T ss_dssp HSSS-EEEE-E-SSTTTS--TTSHHH
T ss_pred hcCCCeeee-cCcHHHhccCCcCHHH
Confidence 367788997 8999999888776643
No 10
>PRK15410 DgsA anti-repressor MtfA; Provisional
Probab=42.33 E-value=50 Score=32.83 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHHHHHHHH-HHhCCCCCCCCCccchHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCc-
Q 016829 134 ESQTINTIVSILNELLQW-AEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSS- 211 (382)
Q Consensus 134 ~S~~v~~ll~iL~~L~~~-ide~PP~~~p~RFGN~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~t- 211 (382)
.+-.+..+.-.||.++.- +|-+||. .+..++.|.+-+.+.-+.+.+++- ..|..+
T Consensus 143 ~NVvIHEFAH~LDm~~G~~adG~PpL------~~~~~~~W~~~~~~~~~~l~~~~~-----------------~~~~~~~ 199 (260)
T PRK15410 143 FNLIIHEVAHKLDMRNGDRASGVPFI------PLREVAGWEHDLHAAMNNIQEEID-----------------LVGENAA 199 (260)
T ss_pred cchhHhHHHhHhhhhcCCCCCCCCCC------CchhHHHHHHHHHHHHHHHHHHHH-----------------hcCCCCC
Confidence 344566777788888877 8889988 235899999988887766655421 012222
Q ss_pred cc-ccCChhHHHHHHHHHHHHHhCCCCcccccchhhhhhHHHHHHHHHHHHHhccccCCCCC
Q 016829 212 RI-DYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHG 272 (382)
Q Consensus 212 RI-DYGTGHELsFl~fL~~L~klgil~~~d~~a~vL~vF~~Yl~lvR~Lq~~Y~LEPAGSHG 272 (382)
=| +||.=++..|.|-++=-+ |+. =-.+-.+|=+|-+.|...|++.|||+-.
T Consensus 200 ~id~YaatnpaEFFAVasE~F----FE~------P~~l~~~~P~LY~~L~~~yrqDP~~~~~ 251 (260)
T PRK15410 200 SIDAYAASDPAECFAVLSEYF----FSA------PELFAPRFPALYQRFCQFYRQDPLQRLH 251 (260)
T ss_pred CCCccccCCchhhheeehhhh----hhC------HHHHHHhCHHHHHHHHHHhCCChhHhhh
Confidence 23 499999999988665221 111 1234456678889999999999996533
No 11
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=36.89 E-value=2.4e+02 Score=23.21 Aligned_cols=59 Identities=17% Similarity=0.423 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhCCcc-hHHHHHHHHHHHhhccCCCcccccCChhHH------------HHHHHHHHHH
Q 016829 168 AYRTWHSRLTDNSESLMLRFLPNE-LQAAVIEIVPYFNDSFGNSSRIDYGTGHET------------NFASWLYCLA 231 (382)
Q Consensus 168 AFR~W~~~l~~~~~~Ll~~~lp~~-~~~~~~EL~~YL~~SFGn~tRIDYGTGHEL------------sFl~fL~~L~ 231 (382)
...+||+++.+. ..+..+.+.. .......+..||..-+|.+.+. +|+++ .|-+|+-||.
T Consensus 15 lv~~FY~~i~~d--p~i~~~F~~~~~~~~~~~~~~fl~~~~gg~~~y---~g~~~~~~H~~~~I~~~~f~~~l~~l~ 86 (116)
T cd00454 15 LVDRFYARVAAD--PRLGPIFPADDLEEHRAKLADFLTQVLGGPGLY---RGHPMLRRHLPFPITEEEFDAWLELLR 86 (116)
T ss_pred HHHHHHHHHhcC--hHHHHhcCCcchHHHHHHHHHHHHHHcCCCCCC---CCCChhhhhcCCCCCHHHHHHHHHHHH
Confidence 345667776654 3355555543 6667778888999999988765 56554 3666666554
No 12
>PF02251 PA28_alpha: Proteasome activator pa28 alpha subunit; InterPro: IPR003185 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the alpha subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_K.
Probab=36.78 E-value=37 Score=26.85 Aligned_cols=33 Identities=21% Similarity=0.516 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhh
Q 016829 169 YRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFND 205 (382)
Q Consensus 169 FR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~ 205 (382)
-..|.++|..+|+.|+...+|.. +.||...|.+
T Consensus 9 V~~fr~~l~~eAE~Lv~~~fP~K----I~eLd~lLk~ 41 (64)
T PF02251_consen 9 VDEFRQSLTKEAENLVSNFFPQK----IVELDELLKS 41 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHH----HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhCcHH----HHHHHHHhcC
Confidence 34688999999999999988754 6688888877
No 13
>PF08090 Enterotoxin_HS1: Heat stable E.coli enterotoxin 1; InterPro: IPR012557 Heat-stable toxin 1 of entero-aggregative Escherichia coli (EAST1) is a small toxin. It is not, however, solely associated with entero-aggregative E. coli but also with many other diarrhoeic E. coli families. Some studies have established the role of EAST1 in some human outbreaks of diarrhoea. Isolates from farm animals have been shown to carry the astA gene coding for EAST1. However, the relation between the presence of EAST1 and disease is not conclusive [].
Probab=36.67 E-value=21 Score=25.06 Aligned_cols=17 Identities=41% Similarity=0.905 Sum_probs=14.9
Q ss_pred CcccccCCCCccCCCCC
Q 016829 19 PKCCAKCGGPTTFPPPP 35 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ 35 (382)
.+.|..|-|.||-|+|.
T Consensus 19 ~tac~s~~grttkps~a 35 (36)
T PF08090_consen 19 TTACGSCHGRTTKPSPA 35 (36)
T ss_pred HhhhccCCCCcCCCCCC
Confidence 67899999999998875
No 14
>PF05752 Calici_MSP: Calicivirus minor structural protein; InterPro: IPR008437 This family consists of minor structural proteins largely from the Caliciviridaei family of viruses, including Sapporo virus (Hu/Chiba/041413/2004/JP) and Sapporo virus (Hu/Ehime/04-1680/2004/JP). These viruses cause gastroenteritis. The function of this family is unknown.
Probab=35.91 E-value=39 Score=31.64 Aligned_cols=30 Identities=40% Similarity=0.692 Sum_probs=22.1
Q ss_pred cCCCCccCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q 016829 24 KCGGPTTFPPPPKSLYSDISPPPNYRPVRAPAINL 58 (382)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~ 58 (382)
+-|.|.+.|+|| .| ..+.|+|++. .|.+++
T Consensus 129 k~Gt~~g~p~pp--~f--~~~np~~~~~-~~~v~l 158 (167)
T PF05752_consen 129 KQGTPFGKPAPP--GF--GNGNPNYQGT-PPRVNL 158 (167)
T ss_pred hCCCCCCCCCCC--CC--CCCCCCCCCC-CCeeeC
Confidence 678887778887 45 4677888776 667777
No 15
>PRK11027 hypothetical protein; Provisional
Probab=33.60 E-value=38 Score=29.73 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=40.7
Q ss_pred CChhHHHHHHHHHHHHHhCCCCcccccchhhhhhHHHHHHHHHHHHHhccccCCCCC-CccCCcc
Q 016829 216 GTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHG-VWGLDDY 279 (382)
Q Consensus 216 GTGHELsFl~fL~~L~klgil~~~d~~a~vL~vF~~Yl~lvR~Lq~~Y~LEPAGSHG-VWGLDDy 279 (382)
.|-.|-.||+.+- .+......+=+++.||++++|+=-..|+|- |..+ +=+.|||
T Consensus 53 ~t~eE~~Fv~v~~--------g~~~~~s~~Ek~WlKY~~~i~~~kr~~tl~--g~~~~~~~~~d~ 107 (112)
T PRK11027 53 VTEEEKQFVAVCR--------GEREPVTEFEKVWLKYMKRIRRPKRFHTLS--GGKPQVDGVEDY 107 (112)
T ss_pred CCHHHHHHHHHHc--------CCCCCCCHHHHHHHHHHHHhcCCCceEecc--CCCCCCCCcccc
Confidence 3567888988765 344455667899999999999989999994 6555 3457776
No 16
>PRK15322 invasion protein OrgB; Provisional
Probab=32.11 E-value=66 Score=31.15 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCccchHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccccCChh
Q 016829 144 ILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGH 219 (382)
Q Consensus 144 iL~~L~~~ide~PP~~~p~RFGN~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRIDYGTGH 219 (382)
+|.-+++|+.+-|-..+|.| -.||.+.++...+|..||.+.+|.+.-|+|+-|.
T Consensus 95 LL~~le~Wl~~l~~~~~pL~----------------------l~lP~~ak~~~~~L~~~l~e~w~~~~~i~yhd~~ 148 (210)
T PRK15322 95 LLTVLDEWLRDFDKPEGQLF----------------------LTLPVNAKKDHQKLMVLLMENWPGTFNLKYHQEQ 148 (210)
T ss_pred HHHHHHHHHHhCccccCcee----------------------EecChhhhhhHHHHHHHHHHhcCCCeEEEEcCCC
Confidence 45556667666665554444 3579999999999999999999988889998765
No 17
>COG3085 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.45 E-value=46 Score=28.95 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHHHhCCCCcccccchhhhhhHHHHHHHHHHHHHhccccCCCCCCccCCccc
Q 016829 217 TGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYH 280 (382)
Q Consensus 217 TGHELsFl~fL~~L~klgil~~~d~~a~vL~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyq 280 (382)
|--|-.|++++- .+.......=+++.+|...+|+=-..|.|- .|---+=|++||-
T Consensus 54 t~eEk~Fvavcr--------ger~aet~~Ek~W~KY~~r~~~~KRfhTLs-g~~~~~~~~eDyt 108 (112)
T COG3085 54 TEEEKLFVAVCR--------GEREAETFAEKVWSKYMTRIRRPKRFHTLS-GGKPQDEGVEDYT 108 (112)
T ss_pred chHHHHHHHHHc--------CCchhhHHHHHHHHHHHHHhcCCceeEecC-CCCCCcccccccc
Confidence 667889999876 344445557789999999999999999996 4444445588883
No 18
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.81 E-value=20 Score=23.98 Aligned_cols=13 Identities=38% Similarity=1.037 Sum_probs=7.9
Q ss_pred CcccccCCCCccC
Q 016829 19 PKCCAKCGGPTTF 31 (382)
Q Consensus 19 ~~~~~~~~~~~~~ 31 (382)
..-|..||+||..
T Consensus 3 ~rfC~~CG~~t~~ 15 (32)
T PF09297_consen 3 HRFCGRCGAPTKP 15 (32)
T ss_dssp TSB-TTT--BEEE
T ss_pred CcccCcCCccccC
Confidence 4579999999976
No 19
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=26.18 E-value=24 Score=32.06 Aligned_cols=17 Identities=47% Similarity=1.087 Sum_probs=1.9
Q ss_pred CCCCCCCCccCCCCCCC
Q 016829 42 ISPPPNYRPVRAPAINL 58 (382)
Q Consensus 42 ~~~~~~~~p~~~p~~~~ 58 (382)
+.||+.|.|||+|+-.+
T Consensus 104 l~PP~gY~Pirtp~rkl 120 (144)
T PF08920_consen 104 LEPPAGYEPIRTPARKL 120 (144)
T ss_dssp ----TT-----------
T ss_pred cCCCCCCccccCccccc
Confidence 67899999999998655
No 20
>TIGR02481 hemeryth_dom hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.
Probab=23.49 E-value=4.3e+02 Score=22.03 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhhccCccCCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCC-C---CCCcc-chHHHHHHHHHHHhHHH
Q 016829 108 TGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQ-Q---SARYG-NLAYRTWHSRLTDNSES 182 (382)
Q Consensus 108 ay~~i~~FI~~ln~sV~g~~~~~~~~~S~~v~~ll~iL~~L~~~ide~PP~~-~---p~RFG-N~AFR~W~~~l~~~~~~ 182 (382)
..++++.-|++|.+++.+..- ...+..+|+.|...+..+--.+ . ...|. =..-+.-|+++.+++..
T Consensus 16 qH~~l~~~in~l~~a~~~~~~---------~~~~~~~l~~L~~y~~~HF~~EE~~M~~~~yp~~~~H~~~H~~~l~~l~~ 86 (126)
T TIGR02481 16 QHKELFELINELYDALSAGNG---------KDELKEILDELIDYTENHFADEEELMEEYGYPDLEEHKKEHEKFVKKIEE 86 (126)
T ss_pred HHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 457888899999998865321 2456667777777776654332 1 22342 24668888888888888
Q ss_pred HHHhhCC
Q 016829 183 LMLRFLP 189 (382)
Q Consensus 183 Ll~~~lp 189 (382)
+..++..
T Consensus 87 l~~~~~~ 93 (126)
T TIGR02481 87 LQEAVAE 93 (126)
T ss_pred HHHHHHc
Confidence 8777643
No 21
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=22.40 E-value=98 Score=28.25 Aligned_cols=61 Identities=25% Similarity=0.404 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhccCccCCCC--CCCcHHHHHHHHHHHHHHHHH-HhCCCCCC--CCCccch---HHHHHHH
Q 016829 110 KNFLGFVVALSESIRGHKISDP--CHESQTINTIVSILNELLQWA-EEIPPLQQ--SARYGNL---AYRTWHS 174 (382)
Q Consensus 110 ~~i~~FI~~ln~sV~g~~~~~~--~~~S~~v~~ll~iL~~L~~~i-de~PP~~~--p~RFGN~---AFR~W~~ 174 (382)
.-++.-+..|.++|...+-.++ +...+ -.++|..|.++| +.||-+.. .=|.||. ++|.|..
T Consensus 6 p~f~~ql~~L~~~Ve~l~~~dP~~y~~~~----~~KlLaai~~li~e~IP~DP~~~~yrqG~TLG~~~khW~R 74 (140)
T PF11663_consen 6 PLFLEQLEALIAAVERLRAKDPEGYRKKP----NTKLLAAISKLIFEVIPADPTRPEYRQGNTLGDEYKHWFR 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHhhhhch----HHHHHHHHHHHHHhhccCCCCchHhhCCCCCcccccchhh
Confidence 3455667777777766555443 22222 244567777778 56776654 3577886 7999975
No 22
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=21.51 E-value=34 Score=29.90 Aligned_cols=13 Identities=31% Similarity=0.802 Sum_probs=11.5
Q ss_pred CCCcccccCChhH
Q 016829 208 GNSSRIDYGTGHE 220 (382)
Q Consensus 208 Gn~tRIDYGTGHE 220 (382)
|...++|||||.-
T Consensus 78 gkh~~~d~gt~~~ 90 (114)
T cd02986 78 GQHMKVDYGSPDH 90 (114)
T ss_pred CcEEEEecCCCCC
Confidence 8889999999963
No 23
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=20.31 E-value=50 Score=25.01 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=9.9
Q ss_pred CCCCcccccCCC
Q 016829 16 SPSPKCCAKCGG 27 (382)
Q Consensus 16 ~~~~~~~~~~~~ 27 (382)
+..++.|++||-
T Consensus 25 p~~A~~CRKCg~ 36 (48)
T PRK04136 25 PWRATKCRKCGY 36 (48)
T ss_pred CccccccccCCC
Confidence 455899999996
Done!