Query 016829
Match_columns 382
No_of_seqs 143 out of 357
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ixm_A Serine/threonine-protei 100.0 8E-136 3E-140 992.6 25.3 298 85-382 2-299 (303)
2 2ixn_A Serine/threonine-protei 100.0 4E-133 1E-137 975.8 24.7 295 88-382 1-300 (310)
3 2ixo_A Serine/threonine-protei 100.0 2E-132 8E-137 974.2 25.3 298 83-381 9-313 (323)
4 2apo_B Ribosome biogenesis pro 69.2 2.6 8.9E-05 32.0 2.3 21 19-41 18-38 (60)
5 2aus_D NOP10, ribosome biogene 51.4 5.8 0.0002 30.1 1.5 20 19-40 17-36 (60)
6 3pgw_B SM B; protein-RNA compl 51.2 16 0.00053 34.4 4.7 47 19-65 154-212 (231)
7 3ls0_A SLL1638 protein, PSBQ; 40.3 6.2 0.00021 34.3 0.1 9 21-29 2-10 (133)
8 2qrw_A Hemoglobin-like protein 37.9 72 0.0025 25.9 6.3 86 169-258 19-121 (128)
9 2bkm_A Truncated hemoglobin fr 32.2 66 0.0023 26.2 5.2 60 171-232 22-94 (128)
10 3vu7_H DNA repair protein REV1 29.8 2E+02 0.0069 24.2 7.9 35 110-154 58-92 (124)
11 1uze_A Angiotensin converting 29.3 27 0.00091 36.3 2.8 121 138-279 96-248 (589)
12 1ux8_A YJBI protein; oxygen st 28.8 70 0.0024 26.3 4.8 61 170-232 22-95 (132)
13 4fjo_A DNA repair protein REV1 26.0 2.5E+02 0.0085 22.3 7.6 35 110-154 31-65 (97)
14 3qmx_A Glutaredoxin A, glutare 26.0 25 0.00086 27.5 1.5 27 1-27 1-31 (99)
15 3c2g_A SYS-1 protein; beta-cat 26.0 23 0.0008 36.2 1.5 81 246-361 519-599 (619)
16 2rsm_A Probable peptide chain 24.1 24 0.00081 29.9 1.0 10 268-277 3-12 (115)
17 1avo_A 11S regulator; proteaso 23.2 56 0.0019 24.3 2.8 34 168-205 10-43 (60)
18 3zsu_A TLL2057 protein, cyanoq 21.8 22 0.00076 30.6 0.4 18 143-160 62-79 (130)
19 2xyk_A 2-ON-2 hemoglobin; oxyg 21.8 2.4E+02 0.0082 23.2 6.9 62 171-232 24-99 (133)
20 2paq_A 5'-deoxynucleotidase YF 21.6 1.2E+02 0.0042 27.0 5.3 64 134-209 127-190 (201)
21 2g2d_A ATP:cobalamin adenosylt 20.8 2.5E+02 0.0084 25.3 7.1 59 143-203 95-169 (193)
22 1zxh_A Immunoglobulin G bindin 20.4 22 0.00075 26.6 0.1 12 268-279 37-48 (56)
No 1
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Probab=100.00 E-value=7.5e-136 Score=992.57 Aligned_cols=298 Identities=47% Similarity=0.917 Sum_probs=294.2
Q ss_pred CccccccccccCcccchhhccCHhHHHHHHHHHHHHhhccCccCCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCCCCc
Q 016829 85 FEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEEIPPLQQSARY 164 (382)
Q Consensus 85 ~~f~~P~KrI~~~~Dl~~f~~S~ay~~i~~FI~~ln~sV~g~~~~~~~~~S~~v~~ll~iL~~L~~~ide~PP~~~p~RF 164 (382)
++|.+|+|||.+++||++|++|+||++|++||++||+||+|+++++..+.|++|++|++||++|++||||+||+++|+||
T Consensus 2 ~~f~~P~KrI~~~~D~~~f~~S~ay~~i~~fI~~l~~sv~g~~~~~~~~~s~~v~~l~~iL~~l~~~i~e~PP~~~p~RF 81 (303)
T 2ixm_A 2 QNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLLALLNTLDRWIDETPPVDQPSRF 81 (303)
T ss_dssp --CCCCEECCCSSHHHHHHHTBHHHHHHHHHHHHHHHHTTTCCTTCCCCCCHHHHHHHHHHHHHHHHHHTSCCCCCSCSS
T ss_pred CCcCCCeeeeCCHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccccCChhHHHHHHHHHHHHHhCCCCcccccch
Q 016829 165 GNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAV 244 (382)
Q Consensus 165 GN~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRIDYGTGHELsFl~fL~~L~klgil~~~d~~a~ 244 (382)
||+|||+|+++|++++++|+++++|++..++++||..||.+||||++||||||||||||+||||||+|+|+|+++|..++
T Consensus 82 GN~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~cL~klgil~~~d~~a~ 161 (303)
T 2ixm_A 82 GNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAI 161 (303)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHTTSCGGGGGGHHHHHHHHHTSSCBTTTTEECHHHHHHHHHHHHHHHHTTSSCGGGHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhCcCCCccCccCcHHHHHHHHHHHHHHHcCCCccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhccccCCCCCCccCCcccchhhhhccccccCCCCCCCCCccchhhhhhccCCCchHHHHHHH
Q 016829 245 VSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFV 324 (382)
Q Consensus 245 vL~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyqfLPFifGSAQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I~fI 324 (382)
||+||.|||++|||||++|+|||||||||||||||||||||||||||++|++++|++|+|+++|++|+++||||+||+||
T Consensus 162 vL~vF~~Yl~l~R~Lq~tY~LEPAGSHGVWgLDDy~FLPfifGsaQL~~~~~~~P~~i~~~~ive~~~~~ymy~~~I~fI 241 (303)
T 2ixm_A 162 VFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFI 241 (303)
T ss_dssp HHTHHHHHHHHHHHHHHHTTCEESSCCGGGCSSSSCCHHHHHHHHHTTTCSSCCGGGGGCHHHHHHHGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCccccchhhhhhHHHhHHHHccCCCCCchhhcCHHHHHHhcccCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccChhhhhccCCCChhhhhHHHHHHHHHHhcCCCcccccccccccccCC
Q 016829 325 KKVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE 382 (382)
Q Consensus 325 ~~vK~GpF~EHSpmL~dIS~V~~W~KVn~GLiKMY~aEVL~KfPVvQHF~FGsll~~~ 382 (382)
++||+|||+||||||||||||++|+|||+||+|||+||||+||||||||+||+||+|+
T Consensus 242 ~~vK~gpf~eHSp~L~dIS~v~~W~KV~~GmiKMY~aEVL~KfpVvQHf~FGsll~~~ 299 (303)
T 2ixm_A 242 TEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIH 299 (303)
T ss_dssp HHHCCSCHHHHCHHHHHHTTSSCHHHHHHHHHHHHHHHTTTCHHHHTTCEECSSSCSS
T ss_pred HHcCCCcHHhhCHHHHhhhcCCChHHHHHHHHHHHHHHHhccccchhhhhhhcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999995
No 2
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase activator prolyl isomerase PTPA, isomerase; 2.8A {Saccharomyces cerevisiae} SCOP: a.268.1.1
Probab=100.00 E-value=3.6e-133 Score=975.82 Aligned_cols=295 Identities=43% Similarity=0.834 Sum_probs=285.7
Q ss_pred ccccccccCcccchhhccCHhHHHHHHHHHHHHhhccCccCCC-CCCCcHHHHHHHHHHHHHHHHHHhCCCC-CC-CCCc
Q 016829 88 QTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISD-PCHESQTINTIVSILNELLQWAEEIPPL-QQ-SARY 164 (382)
Q Consensus 88 ~~P~KrI~~~~Dl~~f~~S~ay~~i~~FI~~ln~sV~g~~~~~-~~~~S~~v~~ll~iL~~L~~~ide~PP~-~~-p~RF 164 (382)
..|+|||.+++||++|++|+||++|++||++||+||+|+++++ ..+.|++|++|++||++|++||||+||+ ++ |+||
T Consensus 1 ~~P~KrI~~~~D~~~f~~S~ay~~i~~fI~~l~~sv~g~~~~~~~~~~s~~v~~l~~iL~~l~~~ide~PP~~~~~~~RF 80 (310)
T 2ixn_A 1 MLPEKRLLTPDDMKLWEESPTRAHFTKFIIDLAESVKGHENSQYKEPISESINSMMNLLSQIKDITQKHPVIKDADSSRF 80 (310)
T ss_dssp --CCCCCCCTTTTHHHHSSHHHHHHHHHHHHHHHTTTTCCTTCCCSSCCHHHHHHHHHHHHHHHHHTTCCCCC-----CC
T ss_pred CCCeeeeCCHhHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCccccCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Confidence 3699999999999999999999999999999999999999998 8899999999999999999999999998 66 9999
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccccCChhHHHHHHHHHHHHHhCCCC-cccccc
Q 016829 165 GNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIK-EEDYHA 243 (382)
Q Consensus 165 GN~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRIDYGTGHELsFl~fL~~L~klgil~-~~d~~a 243 (382)
||+|||+|+++|++++++|+++++|+...++++||..||.+||||+|||||||||||||+||||||+|+|+|+ ++|..+
T Consensus 81 GN~AfR~w~~~l~~~~~~ll~~~lp~~~~~~~~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~cL~klgil~~~~D~~a 160 (310)
T 2ixn_A 81 GKVEFRDFYDEVSRNSRKILRSEFPSLTDEQLEQLSIYLDESWGNKRRIDYGSGHELNFMCLLYGLYSYGIFNLSNDSTN 160 (310)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCBTTTTEECHHHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhCcCCCccCccCchHHHHHHHHHHHHHHcCCCCcccchhH
Confidence 9999999999999999999999999888999999999999999999999999999999999999999999999 899999
Q ss_pred hhhhhhHHHHHHHHHHHHHhccccCCCCCCccCCcccchhhhhccccccCCCCCCCCCccchhhhhhccCCCchHHHHHH
Q 016829 244 VVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAF 323 (382)
Q Consensus 244 ~vL~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyqfLPFifGSAQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I~f 323 (382)
+||+||.|||++|||||+||+|||||||||||||||||||||||||||++|++++|++|+|+++|++|+++||||+||+|
T Consensus 161 ~vL~vF~~Yl~l~R~Lq~tY~LEPAGSHGVWgLDDy~FLPfifGsaQL~~~~~~~P~~i~~~~ive~~~~~ymy~~~I~f 240 (310)
T 2ixn_A 161 LVLKVFIEYLKIMRILETKYWLEPAGSHGVWGLDDYHFLPFLFGAFQLTTHKHLKPISIHNNELVEMFAHRYLYFGCIAF 240 (310)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTCEECCCSCSCSSSSSCSHHHHHHHHHTTTCSSCCGGGGGCHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCCCCCccccchhhhhhHHhhHHHhccCCCCCchhhcCHHHHHHhcccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccc-ccccChhhhhccCCCChhhhhHHHHHHHHHHhcCCCcccccccccccccCC
Q 016829 324 VKKVKKGL-FAEHSPLLDDISGVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRWE 382 (382)
Q Consensus 324 I~~vK~Gp-F~EHSpmL~dIS~V~~W~KVn~GLiKMY~aEVL~KfPVvQHF~FGsll~~~ 382 (382)
|++||+|| |+||||||||||||++|+|||+||+|||+||||+||||||||+||+||+|+
T Consensus 241 I~~vK~gp~f~eHSp~L~dIS~v~~W~KV~~GmiKMY~aEVL~KfpVvQHf~FGsll~~~ 300 (310)
T 2ixn_A 241 INKVKSSASLRWHSPMLDDISGVKTWSKVAEGMIKMYKAEVLSKLPIMQHFYFSEFLPCP 300 (310)
T ss_dssp HHHHTTTSCHHHHCHHHHHHTTSSCHHHHHHHHHHHHHHHTTTCHHHHTTSCCCSSSCC-
T ss_pred HHHhcCCccHHHhCHHHHhcccCCChHHHHHHHHHHHHHHHhccccccccccccccccCC
Confidence 99999999 999999999999999999999999999999999999999999999999985
No 3
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP: a.268.1.1 PDB: 2ixp_A*
Probab=100.00 E-value=2.2e-132 Score=974.22 Aligned_cols=298 Identities=38% Similarity=0.654 Sum_probs=282.6
Q ss_pred CCCccccccccccCcccchhhccCHhHHHHHHHHHHHHhhccCccCCC---CCCCcHHHHHHHHHHHHHHHHHHhCCCCC
Q 016829 83 APFEFQTPSKKIQSPDDIRHFIDSDTGKNFLGFVVALSESIRGHKISD---PCHESQTINTIVSILNELLQWAEEIPPLQ 159 (382)
Q Consensus 83 ~~~~f~~P~KrI~~~~Dl~~f~~S~ay~~i~~FI~~ln~sV~g~~~~~---~~~~S~~v~~ll~iL~~L~~~ide~PP~~ 159 (382)
.+++|.+|+|||.+++||++|++|+||++|++||.+||+||+|+++++ +.++|++|++|++||++|++||||+||++
T Consensus 9 ~~~~f~~P~KrI~~~~D~~~f~~S~ay~~i~~fI~~l~~sv~g~~~~~~~~~~~~s~~v~~l~~iL~~l~~~ide~PP~~ 88 (323)
T 2ixo_A 9 PHATFSTPVKRIFDTQTTLDFQSSLAIHRIKYHLHKYTTLISHCSDPDPHATASSIAMVNGLMGVLDKLAHLIDETPPLP 88 (323)
T ss_dssp TTCCCCCCBCCCCSHHHHHHGGGBHHHHHHHHHHHHHHHHHTTCSSCCTTCCCCSSHHHHHHHHHHHHHHHTTTTSCCCC
T ss_pred CCCeecCCeeeECCHhHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 679999999999999999999999999999999999999999999988 67889999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccccCChhHHHHHHHHHHHHHhCCCCcc
Q 016829 160 QSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRIDYGTGHETNFASWLYCLARMGVIKEE 239 (382)
Q Consensus 160 ~p~RFGN~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRIDYGTGHELsFl~fL~~L~klgil~~~ 239 (382)
+|+||||+|||+|+++|++++++|+++++|++.+.+++||..||.+||||+|||||||||||||+||||||+|+|+| ++
T Consensus 89 ~p~RFGN~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~cL~klgil-~~ 167 (323)
T 2ixo_A 89 GPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEVVPELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMF-PH 167 (323)
T ss_dssp C---CCCSHHHHHHHHHHHHHHHHHHHHSCGGGGGGHHHHHHHHHTSSCCTTTCEECHHHHHHHHHHHHHHHHTTCS-TT
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhccCCCcccccCcHHHHHHHHHHHHHHHcCCC-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 66
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhccccCCCCCCccCCcccchhhhhcccccc---CCCCCCCCCccchhhhhhccCCCc
Q 016829 240 DYHAVVSRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLI---DHKYMKPKSIHNQDILDNFADEYM 316 (382)
Q Consensus 240 d~~a~vL~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyqfLPFifGSAQL~---~~~~~~P~~i~~~~iv~~~~~~ym 316 (382)
|..++||+||.|||++|||||++|+|||||||||||||||||||||||||||+ +|++++|++|+|+++|++|+++||
T Consensus 168 d~~a~vL~vF~~Yl~l~R~Lq~tY~LEPAGSHGVWGLDDy~FLPfifGsAQL~~l~~~~~~~P~~i~~~~ive~~~~~ym 247 (323)
T 2ixo_A 168 HRGADVFLLFNKYYTIMRRLILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLDAQAPLQPREILDKSLVREYKDTNF 247 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCEECC------CSSSCSHHHHHHHHHTSSSGGGSSSCGGGGGCHHHHHHHTTTCH
T ss_pred cccchhHHHHHHHHHHHHHHHHHcccccCCCCCcccccchhhcchhhhHhhhcccccCCCCCchhhcCHHHHHHhcccCc
Confidence 88899999999999999999999999999999999999999999999999954 789999999999999999999999
Q ss_pred hHHHHHHHHHhccccccccChhhhhcc-CCCChhhhhHHHHHHHHHHhcCCCcccccccccccccC
Q 016829 317 YLSCIAFVKKVKKGLFAEHSPLLDDIS-GVPNWNKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIRW 381 (382)
Q Consensus 317 y~~~I~fI~~vK~GpF~EHSpmL~dIS-~V~~W~KVn~GLiKMY~aEVL~KfPVvQHF~FGsll~~ 381 (382)
||+||+||++||+|||+|||||||||| +|++|+|||+||+|||+||||+||||||||+||++|+|
T Consensus 248 y~~~I~fI~~vK~gpf~eHSpmL~dIS~~v~~W~KV~~GmiKMY~aEVL~KfpVvQHf~FGsll~~ 313 (323)
T 2ixo_A 248 YCQGINFINEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEVEKKFPVVQHFWFGTGFFP 313 (323)
T ss_dssp HHHHHHHHHHHCCSCHHHHCHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCHHHHTTCCBCSSSSC
T ss_pred HHHHHHHHHHcCCCchhhhCHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccchhhhhhhcccch
Confidence 999999999999999999999999999 89999999999999999999999999999999999875
No 4
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=69.21 E-value=2.6 Score=31.96 Aligned_cols=21 Identities=43% Similarity=0.922 Sum_probs=17.4
Q ss_pred CcccccCCCCccCCCCCCCCCCC
Q 016829 19 PKCCAKCGGPTTFPPPPKSLYSD 41 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~ 41 (382)
...|..||++|..+-|| -||-
T Consensus 18 k~~CP~CG~~T~~~hPa--rfSp 38 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPP--KFSL 38 (60)
T ss_dssp SSBCSSSCSBCBCCCCC--CCCT
T ss_pred cccCcCCCCcCCCCCCC--CCCC
Confidence 56799999999998888 5653
No 5
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=51.42 E-value=5.8 Score=30.08 Aligned_cols=20 Identities=35% Similarity=0.818 Sum_probs=16.5
Q ss_pred CcccccCCCCccCCCCCCCCCC
Q 016829 19 PKCCAKCGGPTTFPPPPKSLYS 40 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~ 40 (382)
...|..||++|..+-|| -||
T Consensus 17 k~~CP~CG~~t~~ahPa--rfS 36 (60)
T 2aus_D 17 KETCPVCGEKTKVAHPP--RFS 36 (60)
T ss_dssp SSBCTTTCSBCEESSCC--CCC
T ss_pred cccCcCCCCccCCCCCC--CCC
Confidence 56799999999998888 554
No 6
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=51.20 E-value=16 Score=34.44 Aligned_cols=47 Identities=32% Similarity=0.832 Sum_probs=32.0
Q ss_pred Cccccc--CCCCccCCC------CC--CCCCCC--CCCCCCCCccCCCCCCCCCCCCcc
Q 016829 19 PKCCAK--CGGPTTFPP------PP--KSLYSD--ISPPPNYRPVRAPAINLPPNNHSQ 65 (382)
Q Consensus 19 ~~~~~~--~~~~~~~~~------~~--~~~~~~--~~~~~~~~p~~~p~~~~p~~~~~~ 65 (382)
+.+|++ ||+||.++| || ...|+- ++|||-+||=--|.|.+||..-|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~g~~~~~g~p~g~~p~~g~~ 212 (231)
T 3pgw_B 154 AAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTP 212 (231)
T ss_pred ccccccccccCCcccCccccCCCCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCc
Confidence 445554 888888732 22 234443 999999998888888888765555
No 7
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=40.27 E-value=6.2 Score=34.28 Aligned_cols=9 Identities=22% Similarity=0.589 Sum_probs=0.0
Q ss_pred ccccCCCCc
Q 016829 21 CCAKCGGPT 29 (382)
Q Consensus 21 ~~~~~~~~~ 29 (382)
-|+.||||+
T Consensus 2 ~lvsC~~p~ 10 (133)
T 3ls0_A 2 PLGSCSSPQ 10 (133)
T ss_dssp ---------
T ss_pred CCccCCCCC
Confidence 478999976
No 8
>2qrw_A Hemoglobin-like protein HBO; truncated hemoglobin fold, alpha helix, heme, hydroxylation, iron, membrane, metal-binding; HET: HEM; 1.93A {Mycobacterium tuberculosis} PDB: 1ngk_A*
Probab=37.92 E-value=72 Score=25.91 Aligned_cols=86 Identities=16% Similarity=0.370 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhHHHHHHhhCC-cchHHHHHHHHHHHhhccCCCcccccCChh-------------HHHHHHHHHHHHHhC
Q 016829 169 YRTWHSRLTDNSESLMLRFLP-NELQAAVIEIVPYFNDSFGNSSRIDYGTGH-------------ETNFASWLYCLARMG 234 (382)
Q Consensus 169 FR~W~~~l~~~~~~Ll~~~lp-~~~~~~~~EL~~YL~~SFGn~tRIDYGTGH-------------ELsFl~fL~~L~klg 234 (382)
-.+||++|.+. ..+..+.+ .+...+...+..+|...+|.+.+..=--|| |-.|-+||-||.+.
T Consensus 19 v~~FY~~v~~d--p~l~~~F~~~d~~~~~~~l~~fl~~~~GGp~~Y~~~~G~p~m~~~H~~~~I~~~~f~~wl~~~~~a- 95 (128)
T 2qrw_A 19 VSRFYAQVAED--EVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAFLRCMHTA- 95 (128)
T ss_dssp HHHHHHHHHHC--HHHHHHSCCSCCHHHHHHHHHHHHHHTTSCCHHHHHHCSCCHHHHHTTSCCCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhC--HHHHHhccCCCHHHHHHHHHHHHHHHhCCCcccccCcCChhHHHhhcCCCcCHHHHHHHHHHHHHH-
Confidence 34567776663 45777777 677788889999999999988765410133 34788888887653
Q ss_pred CC---CcccccchhhhhhHHHHHHHHH
Q 016829 235 VI---KEEDYHAVVSRVFAKYLELMRK 258 (382)
Q Consensus 235 il---~~~d~~a~vL~vF~~Yl~lvR~ 258 (382)
+ .+.+...-+-.-+..|++.++.
T Consensus 96 -l~~~~e~~~~~~~~~~~~~~~~~~a~ 121 (128)
T 2qrw_A 96 -VASIDSETLDDEHRRELLDYLEMAAH 121 (128)
T ss_dssp -HHTSCTTTSCHHHHHHHHHHHHHHHH
T ss_pred -HhHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 2 2212223344445555555554
No 9
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=32.18 E-value=66 Score=26.15 Aligned_cols=60 Identities=13% Similarity=0.357 Sum_probs=38.2
Q ss_pred HHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccc--cCCh-----------hHHHHHHHHHHHHH
Q 016829 171 TWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRID--YGTG-----------HETNFASWLYCLAR 232 (382)
Q Consensus 171 ~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRID--YGTG-----------HELsFl~fL~~L~k 232 (382)
+||++|.+ +..+..+.+.+...+..-+..+|..-+|.+.+.. +|.- .+-.|-+||-|+.+
T Consensus 22 ~FY~~v~~--Dp~l~~~F~~d~~~~~~~l~~Fl~~~~GGp~~Y~~~~G~p~l~~~H~~~~I~~~~fd~wl~~~~~ 94 (128)
T 2bkm_A 22 AFYRRVAA--HPDLRPIFPDDLTETAHKQKQFLTQYLGGPPLYTAEHGHPMLRARHLRFEITPKRAEAWLACMRA 94 (128)
T ss_dssp HHHHHHHH--CTTTGGGSCSCCHHHHHHHHHHHHHHTTSCCHHHHHHCCCCHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CHHHHHHCccCHHHHHHHHHHHHHHHcCCCCccccccCCccHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 34555443 2245566666777788888888888888877653 3211 24568888777643
No 10
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=29.81 E-value=2e+02 Score=24.21 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhccCccCCCCCCCcHHHHHHHHHHHHHHHHHHh
Q 016829 110 KNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEE 154 (382)
Q Consensus 110 ~~i~~FI~~ln~sV~g~~~~~~~~~S~~v~~ll~iL~~L~~~ide 154 (382)
.|+..+..-|.+.|..+ .++++..+|..|..++++
T Consensus 58 ~DV~~l~~yL~~lVeek----------~Lek~~~vlk~l~rlv~~ 92 (124)
T 3vu7_H 58 EDILQVVKYCTDLIEEK----------DLEKLDLVIKYMKRLMQQ 92 (124)
T ss_dssp HHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcc----------cHHHHHHHHHHHHHHHhc
Confidence 45555556666666433 268889999999999965
No 11
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor, enalaprilat, zinc dependant peptidase, anti-hypertensive drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB: 1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A* 2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Probab=29.34 E-value=27 Score=36.27 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhC----------C--CCCCC--CCcc-----chHHHHHHHHHHHhHHHHHHhhCCcchHHHHHH
Q 016829 138 INTIVSILNELLQWAEEI----------P--PLQQS--ARYG-----NLAYRTWHSRLTDNSESLMLRFLPNELQAAVIE 198 (382)
Q Consensus 138 v~~ll~iL~~L~~~ide~----------P--P~~~p--~RFG-----N~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~E 198 (382)
.+++.+++..+.++.++. | |.-.+ .+-. -.|++.|.++..+....++++++ ....|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~~~~~~~d~~~r~~aw~~~~~~~~~~~~~~~~~lv-----~l~~e 170 (589)
T 1uze_A 96 LEEYNKILLDMETTYSVATVCHPNGSCLQLEPDLTNVMATSRKYEDLLWAWEGWRDKAGRAILQFYPKYV-----ELINQ 170 (589)
T ss_dssp HHHHHHHHHHHHHHHHHCEEECSSSCEEETTTHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTTTHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccccccchhHHHHHHhCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHH
Confidence 366777788888887763 1 11000 1112 23666666666543333444433 33456
Q ss_pred HHHHHhh-ccCCCcccccCChhHHHHHHHHHHHHHhCCCCcccccchhhhhhHHHHHHHH-HHHHHhccc--------cC
Q 016829 199 IVPYFND-SFGNSSRIDYGTGHETNFASWLYCLARMGVIKEEDYHAVVSRVFAKYLELMR-KLQLVYCLE--------PA 268 (382)
Q Consensus 199 L~~YL~~-SFGn~tRIDYGTGHELsFl~fL~~L~klgil~~~d~~a~vL~vF~~Yl~lvR-~Lq~~Y~LE--------PA 268 (382)
++.++.- .+++..|-+|.+|. +..+|=.|+.. +.+ .+..+.+| +| +|...|+++ ||
T Consensus 171 ~A~~~G~~~~~d~~r~~ye~~~---~~~~ld~l~~~--l~p------~~~~Lh~y---~r~kl~~~yg~~~~~~~~~~p~ 236 (589)
T 1uze_A 171 AARLNGYVDAGDSWRSMYETPS---LEQDLERLFQE--LQP------LYLNLHAY---VRRALHRHYGAQHINLEGPIPA 236 (589)
T ss_dssp HHHHTTCSSHHHHHHGGGCCTT---HHHHHHHHHHH--THH------HHHHHHHH---HHHHHHHHHCTTTCCTTSCEET
T ss_pred HHHHcCCCCHHHHHHhcCCHHH---HHHHHHHHHHH--HHH------HHHHHHHH---HHHHHHHHcCccccCCCCCCch
Confidence 6666632 36666788888883 34444444321 000 12233333 55 787788754 55
Q ss_pred ---CCCCCccCCcc
Q 016829 269 ---GSHGVWGLDDY 279 (382)
Q Consensus 269 ---GSHGVWGLDDy 279 (382)
|+ .||.+..
T Consensus 237 hllg~--~~~~~w~ 248 (589)
T 1uze_A 237 HLLGN--MWAQTWS 248 (589)
T ss_dssp TSSSS--TTSSCCG
T ss_pred hhhcc--hhhcchh
Confidence 43 5777654
No 12
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin, oxygen transport; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.1
Probab=28.84 E-value=70 Score=26.31 Aligned_cols=61 Identities=16% Similarity=0.411 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCCCcccc--cCCh-----------hHHHHHHHHHHHHH
Q 016829 170 RTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRID--YGTG-----------HETNFASWLYCLAR 232 (382)
Q Consensus 170 R~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRID--YGTG-----------HELsFl~fL~~L~k 232 (382)
.+||++|.+ +..+..+.+.+...+..-+..+|..-+|.+.+.. +|.- .+-.|-+||-|+.+
T Consensus 22 ~~FY~~v~~--Dp~l~~~F~~d~~~~~~~l~~Fl~~~~GGp~~Y~~~~G~p~l~~~H~~~~I~~~~fd~wl~~~~~ 95 (132)
T 1ux8_A 22 DTFYERVAS--HPLLKPIFPSDLTETARKQKQFLTQYLGGPPLYTEEHGHPMLRARHLPFPITNERADAWLSCMKD 95 (132)
T ss_dssp HHHHHHHHH--CTTTGGGSCSCCHHHHHHHHHHHHHHTTSCCHHHHHHCCCCHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--ChHHHHHCccCHHHHHHHHHHHHHHHhCCCcccccccCChhHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 345555544 2345566667777788888888888888877753 3221 24568888877543
No 13
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=26.05 E-value=2.5e+02 Score=22.34 Aligned_cols=35 Identities=9% Similarity=0.205 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhccCccCCCCCCCcHHHHHHHHHHHHHHHHHHh
Q 016829 110 KNFLGFVVALSESIRGHKISDPCHESQTINTIVSILNELLQWAEE 154 (382)
Q Consensus 110 ~~i~~FI~~ln~sV~g~~~~~~~~~S~~v~~ll~iL~~L~~~ide 154 (382)
.|+..|..-|.+.|..+ .++++..+|..|..+|++
T Consensus 31 ~DV~~l~~yL~~lv~~~----------~lek~~~vlk~l~rlv~~ 65 (97)
T 4fjo_A 31 EDILQVVRYCTDLIEEK----------DLEKLDLVIKYMKRLMQQ 65 (97)
T ss_dssp HHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc----------CHHHHHHHHHHHHHHHhc
Confidence 45555556666666432 368889999999999977
No 14
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=26.01 E-value=25 Score=27.50 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCCCCC----CcccccCCC
Q 016829 1 MEPETQNHDHQSPETSPS----PKCCAKCGG 27 (382)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 27 (382)
|--.||+|+|.|.+...- ...|..|-.
T Consensus 1 ~~~~~~~~~~~~~~~~~v~vy~~~~Cp~C~~ 31 (99)
T 3qmx_A 1 MRGSHHHHHHGSAVSAKIEIYTWSTCPFCMR 31 (99)
T ss_dssp CCSCCCCSSCCSCCCCCEEEEECTTCHHHHH
T ss_pred CCCcccccccCccCCCCEEEEEcCCChhHHH
Confidence 344566666655433222 778888853
No 15
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=25.98 E-value=23 Score=36.18 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=57.0
Q ss_pred hhhhHHHHHHHHHHHHHhccccCCCCCCccCCcccchhhhhccccccCCCCCCCCCccchhhhhhccCCCchHHHHHHHH
Q 016829 246 SRVFAKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFADEYMYLSCIAFVK 325 (382)
Q Consensus 246 L~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDDyqfLPFifGSAQL~~~~~~~P~~i~~~~iv~~~~~~ymy~~~I~fI~ 325 (382)
-.+-.|-+.+.-+|...|+=|--=.||-+.+|== --|.++..++|.-|++--.|.+
T Consensus 519 qQLiER~fSLL~~LmEQc~~E~qVAh~~YsIsCP---------LnlLn~nQ~KP~FI~NVL~VcD--------------- 574 (619)
T 3c2g_A 519 QQLVERTISLLLVLMEQCGAEKEVAQYSYSIDCP---------LNLLNGNQVKPTFIHNVLVVCD--------------- 574 (619)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHTTTTSCCG---------GGGGSSCCCCHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhheeeccCc---------hhhhcccccChHHHHHHHHHHH---------------
Confidence 3455666777888889998887778998888731 1234556678877776544421
Q ss_pred HhccccccccChhhhhccCCCChhhhhHHHHHHHHH
Q 016829 326 KVKKGLFAEHSPLLDDISGVPNWNKVNSGLLKMYKA 361 (382)
Q Consensus 326 ~vK~GpF~EHSpmL~dIS~V~~W~KVn~GLiKMY~a 361 (382)
-..||+|+|-|+ |+ +++|+++|++.
T Consensus 575 -----KILeHcP~~Ad~-----W~-i~r~tle~l~N 599 (619)
T 3c2g_A 575 -----KILEHCPTRADI-----WT-IDRPMLEGLTN 599 (619)
T ss_dssp -----HHHHHCTTHHHH-----SC-CCHHHHHHHHT
T ss_pred -----HHHHhCcchhcc-----ce-echHHHHHHhc
Confidence 136899999886 42 78999999975
No 16
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=24.10 E-value=24 Score=29.94 Aligned_cols=10 Identities=60% Similarity=1.302 Sum_probs=8.8
Q ss_pred CCCCCCccCC
Q 016829 268 AGSHGVWGLD 277 (382)
Q Consensus 268 AGSHGVWGLD 277 (382)
+||+|+|||-
T Consensus 3 ~~~~~~wg~r 12 (115)
T 2rsm_A 3 SGSSGKWGLR 12 (115)
T ss_dssp CCCCCCCCCC
T ss_pred CcccCcccee
Confidence 7999999984
No 17
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=23.20 E-value=56 Score=24.33 Aligned_cols=34 Identities=15% Similarity=0.464 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhh
Q 016829 168 AYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFND 205 (382)
Q Consensus 168 AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~ 205 (382)
-...|.+++..+|+.|+.+.+|.. +.||...|.+
T Consensus 10 kv~~fk~~l~~eAE~ll~~~fP~K----I~eln~LL~~ 43 (60)
T 1avo_A 10 KVDVFREDLCTKTENLLGSYFPKK----ISELDAFLKE 43 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHH----HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHH----HHHHHHHHcc
Confidence 367899999999999999988864 6688877776
No 18
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=21.81 E-value=22 Score=30.64 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 016829 143 SILNELLQWAEEIPPLQQ 160 (382)
Q Consensus 143 ~iL~~L~~~ide~PP~~~ 160 (382)
++..+|..+.+..+|.++
T Consensus 62 ~lr~~m~~l~~~Llp~dq 79 (130)
T 3zsu_A 62 EMLMDMRALNRNLLAKDQ 79 (130)
T ss_dssp HHHHHHHHHHHTSCGGGS
T ss_pred HHHHHHHHHHHhcCHhhH
Confidence 455566666666665544
No 19
>2xyk_A 2-ON-2 hemoglobin; oxygen storage-transport complex; HET: HEM; 2.10A {Agrobacterium tumefaciens}
Probab=21.81 E-value=2.4e+02 Score=23.21 Aligned_cols=62 Identities=15% Similarity=0.294 Sum_probs=43.1
Q ss_pred HHHHHHHHhH-HHHHHhhCCcchHHHHHHHHHHHhhccCCCcccc--cCCh-----------hHHHHHHHHHHHHH
Q 016829 171 TWHSRLTDNS-ESLMLRFLPNELQAAVIEIVPYFNDSFGNSSRID--YGTG-----------HETNFASWLYCLAR 232 (382)
Q Consensus 171 ~W~~~l~~~~-~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn~tRID--YGTG-----------HELsFl~fL~~L~k 232 (382)
+||++|.+.- ...+..+.+.+...+...+..||+.-+|-+.+.. ||-- .|-.|-+||-|+.+
T Consensus 24 ~FY~~v~~Dp~~~~l~~~F~~d~~~~~~~l~~Fl~~~lGGp~~Y~~~~g~p~m~~~H~~~~I~~~~fd~Wl~~~~~ 99 (133)
T 2xyk_A 24 RFYELMDTLPEAARCRAIHPADLSGSEAKFYDYLTGYLGGPPVYVEKHGHPMLRRRHFVAPIGPAERDEWLLCFRR 99 (133)
T ss_dssp HHHHHHHHCGGGHHHHHHSCSSTHHHHHHHHHHHHHHTTSCCHHHHHHCSCCHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccHHHHhccCCHHHHHHHHHHHHHHHcCcCcccccCCCCcCHHHhhcCCCcCHHHHHHHHHHHHH
Confidence 4555555431 1267777888888899999999999999988752 3422 35578888887654
No 20
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=21.65 E-value=1.2e+02 Score=27.04 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchHHHHHHHHHHHhHHHHHHhhCCcchHHHHHHHHHHHhhccCC
Q 016829 134 ESQTINTIVSILNELLQWAEEIPPLQQSARYGNLAYRTWHSRLTDNSESLMLRFLPNELQAAVIEIVPYFNDSFGN 209 (382)
Q Consensus 134 ~S~~v~~ll~iL~~L~~~ide~PP~~~p~RFGN~AFR~W~~~l~~~~~~Ll~~~lp~~~~~~~~EL~~YL~~SFGn 209 (382)
.+....++++..|+|+.++.-. .-.|.||..|....+++.+....+ -+ ..+..+...|..|||-
T Consensus 127 ~~t~ea~lvk~aD~l~a~lqa~----e~~~~Gn~ef~~a~~~~~~~l~~~---~~-----~~v~~f~~~~~p~~~~ 190 (201)
T 2paq_A 127 YSDEEKSLVKQADALCAYLKCL----EELAAGNNEFLLAKTRLEATLEAR---RS-----QEMDYFMEIFVPSFHL 190 (201)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH----HHHHTTCGGGHHHHHHHHHHHHHT---CC-----HHHHHHHHHHSTTCC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHH----HHHHcCChHHHHHHHHHHHHHHhc---CC-----HHHHHHHHHHHHHhCC
Confidence 3556677888888888887643 224779999988888887666542 11 1344555555666653
No 21
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=20.80 E-value=2.5e+02 Score=25.31 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHh----CCCCCC---CCCccchH------HHHHHHHHHHhHHHHHHh---hCCcchHHHHHHHHHHH
Q 016829 143 SILNELLQWAEE----IPPLQQ---SARYGNLA------YRTWHSRLTDNSESLMLR---FLPNELQAAVIEIVPYF 203 (382)
Q Consensus 143 ~iL~~L~~~ide----~PP~~~---p~RFGN~A------FR~W~~~l~~~~~~Ll~~---~lp~~~~~~~~EL~~YL 203 (382)
+-++.|++|||+ .||... |. |+++ .|++..|.|..+-.|.++ -+.+..-..++-|+.||
T Consensus 95 ~~v~~LE~~id~~~~~l~pl~~FILPG--G~~~aA~LH~aRtv~RRAER~~v~l~~~~g~~v~~~~~~yLNRLSD~l 169 (193)
T 2g2d_A 95 SYIDRLEGWCDAYNAGLPALKSFVLPG--GSPLSALLHVARTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLL 169 (193)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCEESC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCceeeCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 345666666664 455432 21 4653 688888888888888764 24555556666666665
No 22
>1zxh_A Immunoglobulin G binding protein G; IGG-binding, phage display, immune system/protein binding complex; NMR {Streptococcus SP}
Probab=20.43 E-value=22 Score=26.57 Aligned_cols=12 Identities=50% Similarity=1.021 Sum_probs=10.4
Q ss_pred CCCCCCccCCcc
Q 016829 268 AGSHGVWGLDDY 279 (382)
Q Consensus 268 AGSHGVWGLDDy 279 (382)
-||.|+|.+||=
T Consensus 37 ng~dg~w~yd~a 48 (56)
T 1zxh_A 37 DGVQGVWTYDDA 48 (56)
T ss_dssp HHTTSEECCCTT
T ss_pred CCccceeecccc
Confidence 589999999983
Done!