Query 016830
Match_columns 382
No_of_seqs 240 out of 2234
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0133 TrpB Tryptophan syntha 100.0 2.1E-84 4.5E-89 616.7 26.7 308 68-381 1-308 (396)
2 PRK04346 tryptophan synthase s 100.0 7.1E-74 1.5E-78 576.1 33.3 309 68-381 3-311 (397)
3 PLN02618 tryptophan synthase, 100.0 1.9E-73 4.2E-78 574.2 33.7 323 59-381 2-324 (410)
4 PRK13028 tryptophan synthase s 100.0 5.1E-71 1.1E-75 556.2 33.9 312 65-381 4-315 (402)
5 KOG1395 Tryptophan synthase be 100.0 2.7E-70 5.8E-75 524.8 25.5 366 3-381 8-376 (477)
6 PRK13802 bifunctional indole-3 100.0 4.2E-67 9.2E-72 554.6 31.9 309 69-381 272-587 (695)
7 PRK13803 bifunctional phosphor 100.0 2.1E-66 4.5E-71 548.4 32.0 307 69-381 217-523 (610)
8 TIGR00263 trpB tryptophan synt 100.0 2.4E-59 5.2E-64 471.2 31.1 303 74-381 1-303 (385)
9 COG1171 IlvA Threonine dehydra 100.0 7.1E-47 1.5E-51 370.2 20.6 218 87-348 4-224 (347)
10 cd06446 Trp-synth_B Tryptophan 100.0 1.5E-45 3.2E-50 368.9 28.6 286 90-380 1-286 (365)
11 PRK08526 threonine dehydratase 100.0 4.3E-42 9.2E-47 347.7 23.0 205 90-335 2-208 (403)
12 COG0031 CysK Cysteine synthase 100.0 2E-41 4.4E-46 326.4 21.8 240 116-374 5-249 (300)
13 PRK12483 threonine dehydratase 100.0 3.3E-41 7.2E-46 349.5 23.8 200 110-335 25-226 (521)
14 PRK08198 threonine dehydratase 100.0 4.2E-41 9.1E-46 340.8 23.0 205 89-334 3-209 (404)
15 PRK06382 threonine dehydratase 100.0 4.2E-41 9.1E-46 341.2 22.1 206 89-335 6-213 (406)
16 PRK08639 threonine dehydratase 100.0 4E-41 8.8E-46 342.6 21.7 209 90-335 7-219 (420)
17 PRK07476 eutB threonine dehydr 100.0 1.1E-40 2.4E-45 328.5 23.3 204 91-334 2-206 (322)
18 KOG1250 Threonine/serine dehyd 100.0 2.6E-41 5.7E-46 329.9 18.1 213 115-357 59-273 (457)
19 KOG1251 Serine racemase [Signa 100.0 5.5E-41 1.2E-45 310.0 18.5 214 90-348 7-222 (323)
20 PLN02970 serine racemase 100.0 2E-40 4.4E-45 327.5 23.9 207 88-334 7-214 (328)
21 PLN02565 cysteine synthase 100.0 1.6E-40 3.4E-45 327.4 21.4 239 116-375 9-254 (322)
22 PLN03013 cysteine synthase 100.0 1.9E-40 4.1E-45 335.4 20.6 240 115-375 116-362 (429)
23 PLN02550 threonine dehydratase 100.0 2.6E-40 5.7E-45 345.3 22.1 198 111-334 98-297 (591)
24 TIGR02079 THD1 threonine dehyd 100.0 2.6E-40 5.6E-45 335.6 21.4 197 115-335 9-208 (409)
25 PRK06110 hypothetical protein; 100.0 5E-40 1.1E-44 323.8 21.8 205 89-334 2-208 (322)
26 TIGR01124 ilvA_2Cterm threonin 100.0 7.5E-40 1.6E-44 339.0 23.7 210 110-349 5-216 (499)
27 PRK08638 threonine dehydratase 100.0 1.5E-39 3.2E-44 321.9 22.7 204 91-334 10-214 (333)
28 TIGR01136 cysKM cysteine synth 100.0 1.7E-39 3.7E-44 316.7 22.2 198 118-336 3-204 (299)
29 PRK11761 cysM cysteine synthas 100.0 1.3E-39 2.7E-44 317.6 20.7 234 115-375 5-242 (296)
30 PRK09224 threonine dehydratase 100.0 2.1E-39 4.6E-44 336.5 23.2 199 110-334 8-208 (504)
31 PRK07048 serine/threonine dehy 100.0 2.4E-39 5.3E-44 318.7 22.3 206 89-334 5-211 (321)
32 PRK10717 cysteine synthase A; 100.0 2.5E-39 5.5E-44 319.7 22.3 241 116-374 7-263 (330)
33 PLN02356 phosphateglycerate ki 100.0 1.6E-39 3.4E-44 328.5 20.9 246 112-375 43-349 (423)
34 TIGR01139 cysK cysteine syntha 100.0 3.2E-39 6.9E-44 314.6 22.2 237 118-375 3-245 (298)
35 PRK06608 threonine dehydratase 100.0 2.8E-39 6.1E-44 320.5 22.1 205 89-334 4-210 (338)
36 PLN02556 cysteine synthase/L-3 100.0 1.6E-39 3.5E-44 325.2 20.3 240 115-375 52-298 (368)
37 PLN00011 cysteine synthase 100.0 4.2E-39 9.2E-44 317.4 22.9 238 117-375 12-256 (323)
38 TIGR01127 ilvA_1Cterm threonin 100.0 2.1E-39 4.5E-44 325.9 21.0 185 124-334 1-187 (380)
39 TIGR02991 ectoine_eutB ectoine 100.0 5.3E-39 1.2E-43 316.0 23.4 204 91-334 2-206 (317)
40 PRK08813 threonine dehydratase 100.0 1.7E-39 3.8E-44 322.2 20.0 195 90-334 21-216 (349)
41 PRK07334 threonine dehydratase 100.0 9.6E-40 2.1E-44 330.9 17.7 207 89-335 4-211 (403)
42 TIGR01138 cysM cysteine syntha 100.0 5.4E-39 1.2E-43 312.3 21.5 232 117-375 3-238 (290)
43 cd06447 D-Ser-dehyd D-Serine d 100.0 1.3E-38 2.9E-43 321.3 24.5 243 73-334 5-284 (404)
44 cd01561 CBS_like CBS_like: Thi 100.0 1.1E-38 2.5E-43 309.6 22.6 232 123-374 2-241 (291)
45 PRK06815 hypothetical protein; 100.0 1.6E-38 3.5E-43 312.4 22.4 204 92-335 4-208 (317)
46 TIGR01415 trpB_rel pyridoxal-p 100.0 3.9E-38 8.4E-43 319.8 25.7 205 119-335 64-288 (419)
47 PRK08246 threonine dehydratase 100.0 2.8E-38 6.1E-43 309.9 22.2 201 89-334 4-204 (310)
48 PRK02991 D-serine dehydratase; 100.0 4.3E-38 9.3E-43 320.9 23.7 228 90-334 41-307 (441)
49 cd06448 L-Ser-dehyd Serine deh 100.0 3.7E-38 8.1E-43 309.8 20.9 192 123-334 1-196 (316)
50 cd01562 Thr-dehyd Threonine de 100.0 7.8E-38 1.7E-42 304.7 21.9 203 92-334 1-204 (304)
51 PRK12391 tryptophan synthase s 100.0 3.6E-37 7.8E-42 313.2 26.7 202 122-335 76-297 (427)
52 TIGR01137 cysta_beta cystathio 100.0 1.8E-37 3.9E-42 318.1 21.9 240 116-375 5-257 (454)
53 PRK06381 threonine synthase; V 100.0 4E-37 8.6E-42 302.5 22.5 198 114-334 7-211 (319)
54 TIGR02035 D_Ser_am_lyase D-ser 100.0 5.5E-37 1.2E-41 311.8 22.6 234 87-334 33-302 (431)
55 PRK08206 diaminopropionate amm 100.0 1.8E-36 3.8E-41 306.6 23.4 213 90-334 24-268 (399)
56 PRK06352 threonine synthase; V 100.0 1.4E-36 3E-41 302.7 20.5 189 120-334 26-220 (351)
57 PRK08197 threonine synthase; V 100.0 1.4E-35 2.9E-40 299.8 22.3 189 123-334 79-275 (394)
58 PRK07591 threonine synthase; V 100.0 2E-35 4.3E-40 300.9 21.6 190 123-334 89-286 (421)
59 cd01563 Thr-synth_1 Threonine 100.0 2E-35 4.3E-40 290.8 20.8 189 122-334 21-216 (324)
60 TIGR01747 diampropi_NH3ly diam 100.0 7E-35 1.5E-39 292.6 23.3 211 112-346 13-255 (376)
61 PRK07409 threonine synthase; V 100.0 4.3E-35 9.4E-40 292.1 21.5 190 119-334 28-224 (353)
62 PRK06721 threonine synthase; R 100.0 5.2E-35 1.1E-39 291.5 21.9 190 119-334 25-220 (352)
63 TIGR03528 2_3_DAP_am_ly diamin 100.0 6.8E-35 1.5E-39 294.5 22.2 203 114-334 34-266 (396)
64 KOG1252 Cystathionine beta-syn 100.0 9.8E-36 2.1E-40 286.6 12.9 237 116-373 46-294 (362)
65 cd00640 Trp-synth-beta_II Tryp 100.0 1.1E-34 2.3E-39 274.4 19.0 185 124-330 1-188 (244)
66 TIGR01275 ACC_deam_rel pyridox 100.0 2.1E-34 4.6E-39 282.1 19.8 197 119-333 3-207 (311)
67 PRK06450 threonine synthase; V 100.0 4.9E-34 1.1E-38 282.9 20.5 176 123-334 58-240 (338)
68 PRK06260 threonine synthase; V 100.0 6.4E-34 1.4E-38 287.9 21.1 188 123-334 67-262 (397)
69 PRK05638 threonine synthase; V 100.0 7.4E-34 1.6E-38 291.1 21.3 187 119-334 63-256 (442)
70 TIGR00260 thrC threonine synth 100.0 7.6E-34 1.6E-38 280.0 18.8 189 122-333 22-218 (328)
71 PRK03910 D-cysteine desulfhydr 100.0 2.1E-33 4.5E-38 277.7 20.9 204 116-335 9-223 (331)
72 cd06449 ACCD Aminocyclopropane 100.0 3E-33 6.6E-38 273.7 20.6 201 124-335 1-214 (307)
73 PRK08329 threonine synthase; V 100.0 3.8E-33 8.3E-38 277.6 20.7 179 123-334 64-249 (347)
74 PF00291 PALP: Pyridoxal-phosp 100.0 1.5E-33 3.2E-38 273.5 15.8 197 117-334 2-204 (306)
75 PLN02569 threonine synthase 100.0 5.6E-33 1.2E-37 286.3 21.0 190 122-334 132-334 (484)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 2.7E-32 5.8E-37 270.5 22.5 204 122-335 13-228 (337)
77 PRK12390 1-aminocyclopropane-1 100.0 2.8E-32 6.1E-37 270.3 22.5 204 119-335 12-229 (337)
78 PRK14045 1-aminocyclopropane-1 100.0 1.1E-31 2.3E-36 265.5 20.5 201 115-332 14-221 (329)
79 TIGR03844 cysteate_syn cysteat 100.0 2.5E-31 5.4E-36 268.7 19.4 197 123-349 62-275 (398)
80 COG1350 Predicted alternative 100.0 4.6E-31 1E-35 252.6 19.5 255 110-380 66-340 (432)
81 KOG1481 Cysteine synthase [Ami 100.0 6.3E-31 1.4E-35 247.2 13.4 263 92-373 16-313 (391)
82 COG0498 ThrC Threonine synthas 99.9 1.3E-26 2.8E-31 233.5 17.2 234 74-333 21-273 (411)
83 PRK09225 threonine synthase; V 99.9 4.5E-24 9.7E-29 219.0 19.2 234 75-329 22-279 (462)
84 cd01560 Thr-synth_2 Threonine 99.9 1.6E-23 3.4E-28 215.0 20.5 236 75-332 21-284 (460)
85 COG2515 Acd 1-aminocyclopropan 99.9 8.4E-22 1.8E-26 188.3 16.7 202 118-334 10-219 (323)
86 COG3048 DsdA D-serine dehydrat 99.6 8.1E-14 1.8E-18 133.5 17.2 233 80-333 38-309 (443)
87 PF14821 Thr_synth_N: Threonin 88.0 0.59 1.3E-05 36.8 3.3 43 76-122 22-64 (79)
88 PF00106 adh_short: short chai 81.6 22 0.00047 30.4 10.7 83 178-261 2-85 (167)
89 PF05368 NmrA: NmrA-like famil 76.6 13 0.00027 34.3 8.1 51 179-233 1-51 (233)
90 PF00764 Arginosuc_synth: Argi 76.0 23 0.0005 36.3 10.2 131 180-327 1-138 (388)
91 PRK06128 oxidoreductase; Provi 73.4 46 0.00099 32.0 11.4 74 177-251 56-129 (300)
92 PRK07523 gluconate 5-dehydroge 72.1 62 0.0014 29.9 11.6 71 177-250 11-81 (255)
93 PF00070 Pyr_redox: Pyridine n 72.0 20 0.00044 27.3 7.0 52 180-231 2-59 (80)
94 TIGR00561 pntA NAD(P) transhyd 71.3 53 0.0011 35.0 11.9 50 179-234 166-215 (511)
95 PRK07109 short chain dehydroge 70.1 1.2E+02 0.0025 29.9 16.6 73 177-252 9-81 (334)
96 cd08281 liver_ADH_like1 Zinc-d 69.4 85 0.0018 31.1 12.6 48 179-231 194-241 (371)
97 PRK12743 oxidoreductase; Provi 69.2 70 0.0015 29.6 11.3 57 178-235 4-60 (256)
98 PRK12937 short chain dehydroge 69.2 89 0.0019 28.4 11.9 74 177-252 6-79 (245)
99 TIGR02825 B4_12hDH leukotriene 67.9 37 0.00081 32.8 9.5 49 178-232 141-189 (325)
100 PRK08277 D-mannonate oxidoredu 67.8 91 0.002 29.2 11.9 56 177-234 11-66 (278)
101 PRK09424 pntA NAD(P) transhydr 67.5 1.6E+02 0.0034 31.5 14.4 52 177-234 165-216 (509)
102 PRK13394 3-hydroxybutyrate deh 65.7 1E+02 0.0022 28.3 11.6 57 177-235 8-64 (262)
103 PRK08416 7-alpha-hydroxysteroi 65.6 99 0.0022 28.7 11.6 74 177-252 9-83 (260)
104 PRK07097 gluconate 5-dehydroge 65.0 87 0.0019 29.2 11.1 72 177-251 11-82 (265)
105 cd08294 leukotriene_B4_DH_like 64.9 50 0.0011 31.6 9.6 49 178-232 146-194 (329)
106 PRK12481 2-deoxy-D-gluconate 3 64.9 86 0.0019 29.1 11.0 71 177-252 9-79 (251)
107 TIGR03451 mycoS_dep_FDH mycoth 64.5 1.2E+02 0.0025 29.9 12.4 48 179-231 179-226 (358)
108 cd08295 double_bond_reductase_ 63.6 49 0.0011 32.2 9.4 49 177-231 153-202 (338)
109 PRK12744 short chain dehydroge 63.3 99 0.0022 28.6 11.1 73 177-250 9-83 (257)
110 PRK08862 short chain dehydroge 63.1 1.1E+02 0.0024 28.2 11.2 72 178-252 7-78 (227)
111 cd01011 nicotinamidase Nicotin 62.4 43 0.00093 30.5 8.2 64 167-230 129-196 (196)
112 KOG0025 Zn2+-binding dehydroge 62.2 31 0.00067 34.2 7.4 68 163-233 147-216 (354)
113 PRK12938 acetyacetyl-CoA reduc 60.9 1.3E+02 0.0029 27.3 11.4 56 178-234 5-60 (246)
114 PRK06182 short chain dehydroge 60.7 1.1E+02 0.0023 28.7 10.9 77 177-262 4-80 (273)
115 TIGR01832 kduD 2-deoxy-D-gluco 60.5 1.3E+02 0.0027 27.5 11.2 70 177-251 6-75 (248)
116 PRK12823 benD 1,6-dihydroxycyc 60.3 1.2E+02 0.0026 28.0 11.0 82 177-262 9-90 (260)
117 PRK06139 short chain dehydroge 60.3 82 0.0018 31.1 10.4 73 177-252 8-80 (330)
118 PRK08993 2-deoxy-D-gluconate 3 60.2 92 0.002 28.8 10.3 69 177-250 11-79 (253)
119 PRK12939 short chain dehydroge 59.9 1.4E+02 0.003 27.2 11.7 56 177-234 8-63 (250)
120 PF00107 ADH_zinc_N: Zinc-bind 59.3 45 0.00099 27.3 7.2 40 189-234 3-42 (130)
121 cd08287 FDH_like_ADH3 formalde 59.2 1.7E+02 0.0037 28.2 12.3 48 178-231 171-218 (345)
122 PRK06194 hypothetical protein; 59.1 1.6E+02 0.0034 27.7 12.1 71 177-250 7-77 (287)
123 PF01210 NAD_Gly3P_dh_N: NAD-d 58.6 13 0.00027 32.7 3.8 31 180-210 2-32 (157)
124 PRK08589 short chain dehydroge 58.5 1.3E+02 0.0028 28.2 11.1 82 177-262 7-88 (272)
125 PRK08063 enoyl-(acyl carrier p 58.5 1.5E+02 0.0032 27.1 11.4 58 177-235 5-62 (250)
126 PRK05866 short chain dehydroge 58.3 1.3E+02 0.0029 28.8 11.3 82 178-262 42-123 (293)
127 PF03808 Glyco_tran_WecB: Glyc 58.3 1.3E+02 0.0029 26.8 10.5 102 189-309 13-114 (172)
128 PRK08226 short chain dehydroge 58.1 1.4E+02 0.0031 27.5 11.2 71 177-251 7-77 (263)
129 PF00107 ADH_zinc_N: Zinc-bind 58.0 40 0.00087 27.7 6.7 85 219-330 7-92 (130)
130 PRK05370 argininosuccinate syn 58.0 1.3E+02 0.0029 31.4 11.5 59 175-234 10-73 (447)
131 TIGR00670 asp_carb_tr aspartat 57.9 50 0.0011 32.6 8.2 53 180-233 153-208 (301)
132 PRK08303 short chain dehydroge 57.9 1.9E+02 0.004 28.1 17.1 75 177-252 9-91 (305)
133 PRK07454 short chain dehydroge 57.8 1.2E+02 0.0026 27.6 10.5 73 177-252 7-79 (241)
134 PLN03154 putative allyl alcoho 57.4 69 0.0015 31.6 9.3 49 178-232 161-210 (348)
135 PRK07478 short chain dehydroge 57.3 1.6E+02 0.0034 27.1 11.3 73 177-252 7-79 (254)
136 PRK06181 short chain dehydroge 57.1 1.5E+02 0.0033 27.3 11.2 71 178-251 3-73 (263)
137 cd08291 ETR_like_1 2-enoyl thi 57.0 85 0.0018 30.2 9.7 49 178-232 145-194 (324)
138 PRK12826 3-ketoacyl-(acyl-carr 56.9 1.5E+02 0.0033 26.8 11.2 56 177-234 7-62 (251)
139 PRK08936 glucose-1-dehydrogena 56.4 1.7E+02 0.0036 27.1 12.0 57 177-234 8-64 (261)
140 PRK06935 2-deoxy-D-gluconate 3 56.1 1.7E+02 0.0036 27.0 11.5 73 177-253 16-88 (258)
141 cd06533 Glyco_transf_WecG_TagA 56.1 1.4E+02 0.0031 26.5 10.3 101 189-308 11-111 (171)
142 TIGR02415 23BDH acetoin reduct 55.4 1.7E+02 0.0036 26.8 11.6 72 178-252 2-73 (254)
143 PRK07890 short chain dehydroge 55.4 1.7E+02 0.0036 26.8 11.2 56 177-234 6-61 (258)
144 PRK08217 fabG 3-ketoacyl-(acyl 55.2 1.5E+02 0.0032 27.0 10.6 56 177-234 6-61 (253)
145 PRK06947 glucose-1-dehydrogena 54.6 1.7E+02 0.0037 26.6 11.6 56 178-234 4-59 (248)
146 COG1063 Tdh Threonine dehydrog 54.2 2.3E+02 0.0051 28.1 12.7 50 179-233 171-221 (350)
147 PF02887 PK_C: Pyruvate kinase 54.2 64 0.0014 26.7 7.3 78 165-249 6-83 (117)
148 TIGR03206 benzo_BadH 2-hydroxy 53.9 1.7E+02 0.0036 26.6 10.8 73 177-252 4-76 (250)
149 PRK08213 gluconate 5-dehydroge 53.8 1.6E+02 0.0034 27.2 10.7 72 177-251 13-84 (259)
150 PRK05653 fabG 3-ketoacyl-(acyl 53.8 1.7E+02 0.0036 26.3 10.7 56 177-234 6-61 (246)
151 PRK06077 fabG 3-ketoacyl-(acyl 53.2 1.8E+02 0.0039 26.5 11.7 74 177-252 7-80 (252)
152 TIGR02822 adh_fam_2 zinc-bindi 53.0 50 0.0011 32.3 7.4 48 178-231 167-214 (329)
153 PRK05693 short chain dehydroge 52.9 1.6E+02 0.0035 27.5 10.7 51 178-234 3-53 (274)
154 PRK07666 fabG 3-ketoacyl-(acyl 52.8 1.8E+02 0.0039 26.4 11.5 71 177-250 8-78 (239)
155 PRK05876 short chain dehydroge 52.4 1.8E+02 0.0039 27.5 11.0 56 177-234 7-62 (275)
156 cd08296 CAD_like Cinnamyl alco 52.3 93 0.002 30.1 9.2 47 179-231 166-212 (333)
157 PRK08643 acetoin reductase; Va 52.2 1.8E+02 0.0039 26.7 10.8 72 178-252 4-75 (256)
158 PRK12935 acetoacetyl-CoA reduc 51.9 1.9E+02 0.0041 26.3 11.2 74 177-252 7-80 (247)
159 cd08301 alcohol_DH_plants Plan 51.8 54 0.0012 32.4 7.5 50 177-231 188-237 (369)
160 TIGR03366 HpnZ_proposed putati 51.7 57 0.0012 31.0 7.4 48 179-231 123-170 (280)
161 PRK12429 3-hydroxybutyrate deh 51.6 1.9E+02 0.0041 26.3 11.4 71 177-250 5-75 (258)
162 cd08300 alcohol_DH_class_III c 51.5 91 0.002 30.9 9.1 48 179-231 189-236 (368)
163 PRK07791 short chain dehydroge 51.1 2.2E+02 0.0049 27.0 11.8 76 177-253 7-89 (286)
164 PRK06949 short chain dehydroge 50.9 2E+02 0.0043 26.3 11.1 33 177-209 10-42 (258)
165 PRK05993 short chain dehydroge 50.5 1.2E+02 0.0026 28.6 9.4 51 178-234 6-56 (277)
166 cd08256 Zn_ADH2 Alcohol dehydr 50.3 1.1E+02 0.0025 29.7 9.5 49 178-231 176-224 (350)
167 PF08659 KR: KR domain; Inter 50.0 1.8E+02 0.004 25.7 12.0 71 179-250 3-75 (181)
168 PRK13656 trans-2-enoyl-CoA red 49.9 3.1E+02 0.0068 28.3 12.6 99 164-264 24-139 (398)
169 cd08293 PTGR2 Prostaglandin re 49.5 1.4E+02 0.003 28.9 9.9 50 177-232 156-207 (345)
170 PRK07985 oxidoreductase; Provi 49.5 2.4E+02 0.0053 26.9 15.9 75 177-252 50-124 (294)
171 PRK06114 short chain dehydroge 49.4 2.1E+02 0.0047 26.3 11.9 73 177-251 9-81 (254)
172 PRK06172 short chain dehydroge 49.2 2.1E+02 0.0046 26.1 11.2 56 177-234 8-63 (253)
173 PLN02586 probable cinnamyl alc 49.1 74 0.0016 31.6 8.0 49 178-231 185-233 (360)
174 PRK05557 fabG 3-ketoacyl-(acyl 48.9 2E+02 0.0044 25.8 11.9 58 177-235 6-63 (248)
175 PRK05867 short chain dehydroge 48.7 2.2E+02 0.0047 26.2 11.8 72 177-251 10-81 (253)
176 PLN03050 pyridoxine (pyridoxam 48.5 1E+02 0.0022 29.4 8.5 53 177-229 61-117 (246)
177 PF04127 DFP: DNA / pantothena 48.3 98 0.0021 28.2 8.0 50 176-234 19-68 (185)
178 PRK07677 short chain dehydroge 48.3 2.1E+02 0.0045 26.3 10.5 82 178-262 3-84 (252)
179 TIGR02819 fdhA_non_GSH formald 48.1 1.2E+02 0.0026 30.6 9.5 47 179-230 188-234 (393)
180 PRK07792 fabG 3-ketoacyl-(acyl 47.6 2.7E+02 0.0058 26.8 12.2 71 177-249 13-83 (306)
181 COG0078 ArgF Ornithine carbamo 47.6 1.2E+02 0.0026 30.2 8.8 56 178-233 155-213 (310)
182 PRK07370 enoyl-(acyl carrier p 47.3 1.9E+02 0.0041 26.9 10.2 74 178-252 8-83 (258)
183 PRK05854 short chain dehydroge 47.2 2.3E+02 0.005 27.4 11.1 33 177-209 15-47 (313)
184 PRK07806 short chain dehydroge 47.0 2.3E+02 0.0049 25.8 11.1 57 177-234 7-63 (248)
185 cd08230 glucose_DH Glucose deh 46.9 67 0.0015 31.5 7.3 49 179-230 175-223 (355)
186 PTZ00075 Adenosylhomocysteinas 46.9 3.8E+02 0.0082 28.4 13.3 31 177-207 254-284 (476)
187 TIGR03325 BphB_TodD cis-2,3-di 46.6 2.2E+02 0.0047 26.4 10.4 31 177-207 6-36 (262)
188 PRK06483 dihydromonapterin red 46.6 2.2E+02 0.0049 25.7 11.4 52 178-234 4-55 (236)
189 PRK09880 L-idonate 5-dehydroge 46.5 72 0.0016 31.2 7.4 48 179-231 172-219 (343)
190 PRK07832 short chain dehydroge 46.4 1.6E+02 0.0035 27.5 9.6 50 178-229 2-51 (272)
191 PTZ00323 NAD+ synthase; Provis 46.0 2.6E+02 0.0056 27.5 11.0 63 172-234 42-113 (294)
192 PRK05565 fabG 3-ketoacyl-(acyl 45.8 2.3E+02 0.0049 25.5 11.2 58 177-235 6-63 (247)
193 TIGR01316 gltA glutamate synth 45.7 56 0.0012 33.8 6.7 53 179-231 274-328 (449)
194 PRK06124 gluconate 5-dehydroge 45.3 2.4E+02 0.0053 25.8 11.3 56 177-234 12-67 (256)
195 PRK12825 fabG 3-ketoacyl-(acyl 45.0 2.3E+02 0.005 25.4 12.0 57 177-234 7-63 (249)
196 PRK05650 short chain dehydroge 45.0 2.6E+02 0.0056 26.0 11.6 55 178-234 2-56 (270)
197 cd08240 6_hydroxyhexanoate_dh_ 45.0 1.5E+02 0.0032 28.8 9.4 48 179-231 178-225 (350)
198 TIGR00696 wecB_tagA_cpsF bacte 44.8 2.4E+02 0.0052 25.5 10.4 99 189-307 13-111 (177)
199 PRK10538 malonic semialdehyde 44.7 2.5E+02 0.0054 25.7 10.5 31 178-208 2-32 (248)
200 PRK06113 7-alpha-hydroxysteroi 44.7 2.5E+02 0.0055 25.7 11.5 74 176-252 11-84 (255)
201 cd08233 butanediol_DH_like (2R 44.6 1.5E+02 0.0033 28.8 9.4 49 179-232 175-223 (351)
202 COG0137 ArgG Argininosuccinate 44.4 2.2E+02 0.0047 29.3 10.3 59 176-234 4-66 (403)
203 cd08231 MDR_TM0436_like Hypoth 43.8 76 0.0016 31.1 7.1 47 178-231 180-227 (361)
204 cd08297 CAD3 Cinnamyl alcohol 43.8 1.6E+02 0.0034 28.5 9.3 49 177-231 167-215 (341)
205 PF03853 YjeF_N: YjeF-related 43.8 1.4E+02 0.0031 26.5 8.2 57 176-232 25-87 (169)
206 COG1751 Uncharacterized conser 43.6 1.1E+02 0.0024 27.5 7.1 73 159-232 11-89 (186)
207 PRK08340 glucose-1-dehydrogena 43.5 2.3E+02 0.0051 26.1 10.1 31 178-208 2-32 (259)
208 PF00185 OTCace: Aspartate/orn 43.4 1.4E+02 0.0029 26.4 8.0 48 186-233 13-65 (158)
209 TIGR02818 adh_III_F_hyde S-(hy 43.4 96 0.0021 30.8 7.8 48 179-231 188-235 (368)
210 PRK08628 short chain dehydroge 43.4 2.6E+02 0.0057 25.6 10.7 70 177-250 8-77 (258)
211 TIGR01963 PHB_DH 3-hydroxybuty 43.2 2.6E+02 0.0056 25.4 11.2 55 178-234 3-57 (255)
212 PRK08265 short chain dehydroge 43.0 2.8E+02 0.006 25.7 10.8 70 177-252 7-76 (261)
213 PTZ00331 alpha/beta hydrolase; 43.0 1.7E+02 0.0036 27.1 8.9 61 171-231 141-205 (212)
214 cd01012 YcaC_related YcaC rela 42.7 1.9E+02 0.0042 25.0 8.8 61 171-231 83-147 (157)
215 PRK09135 pteridine reductase; 42.3 2.6E+02 0.0056 25.2 11.8 33 177-209 7-39 (249)
216 PRK06123 short chain dehydroge 42.1 2.7E+02 0.0058 25.3 11.7 72 178-251 4-75 (248)
217 cd08276 MDR7 Medium chain dehy 42.0 1.8E+02 0.0038 27.6 9.2 47 179-231 163-209 (336)
218 TIGR01831 fabG_rel 3-oxoacyl-( 42.0 2.6E+02 0.0057 25.2 11.5 68 180-249 2-69 (239)
219 cd08292 ETR_like_2 2-enoyl thi 42.0 1.7E+02 0.0037 27.7 9.2 48 178-231 142-189 (324)
220 PLN02740 Alcohol dehydrogenase 41.6 98 0.0021 30.9 7.6 50 177-231 199-248 (381)
221 PRK06463 fabG 3-ketoacyl-(acyl 41.5 2.8E+02 0.0061 25.4 11.2 68 177-252 8-75 (255)
222 PRK08017 oxidoreductase; Provi 41.5 2.2E+02 0.0047 26.0 9.5 51 178-234 4-54 (256)
223 KOG0023 Alcohol dehydrogenase, 41.4 95 0.0021 31.3 7.1 48 182-234 187-234 (360)
224 PRK08278 short chain dehydroge 41.4 3E+02 0.0066 25.7 11.5 58 177-234 7-69 (273)
225 cd08242 MDR_like Medium chain 41.4 1.3E+02 0.0027 28.8 8.1 47 179-231 158-204 (319)
226 PF00857 Isochorismatase: Isoc 41.3 1.1E+02 0.0023 26.6 7.0 62 170-231 106-171 (174)
227 TIGR02685 pter_reduc_Leis pter 41.2 3E+02 0.0065 25.6 11.4 30 178-207 3-32 (267)
228 PRK08085 gluconate 5-dehydroge 41.1 2.8E+02 0.0062 25.3 11.8 72 177-251 10-81 (254)
229 COG0604 Qor NADPH:quinone redu 41.0 1.7E+02 0.0036 29.0 9.0 50 177-232 144-193 (326)
230 PRK07062 short chain dehydroge 40.6 3E+02 0.0064 25.4 11.4 33 177-209 9-41 (265)
231 PRK08251 short chain dehydroge 40.3 2.9E+02 0.0062 25.1 11.5 72 178-252 4-77 (248)
232 PLN02178 cinnamyl-alcohol dehy 40.2 1.2E+02 0.0027 30.3 8.1 49 178-231 180-228 (375)
233 cd08284 FDH_like_2 Glutathione 40.2 2E+02 0.0043 27.7 9.4 47 177-229 169-215 (344)
234 cd08239 THR_DH_like L-threonin 40.2 91 0.002 30.2 7.0 48 178-231 166-213 (339)
235 PRK09730 putative NAD(P)-bindi 39.9 2.8E+02 0.0061 25.0 11.9 71 178-250 3-73 (247)
236 COG0300 DltE Short-chain dehyd 39.9 3.6E+02 0.0078 26.2 10.8 59 176-235 6-64 (265)
237 PRK12859 3-ketoacyl-(acyl-carr 39.9 3.1E+02 0.0066 25.3 16.6 75 178-253 8-93 (256)
238 PRK09134 short chain dehydroge 39.3 3.1E+02 0.0067 25.2 11.9 71 177-249 10-80 (258)
239 PTZ00354 alcohol dehydrogenase 39.3 1.8E+02 0.004 27.5 8.9 49 177-231 142-190 (334)
240 cd00401 AdoHcyase S-adenosyl-L 39.2 90 0.0019 32.3 6.9 48 177-230 202-249 (413)
241 cd05284 arabinose_DH_like D-ar 39.1 1.9E+02 0.0041 27.8 9.0 47 178-231 170-217 (340)
242 PRK06197 short chain dehydroge 39.0 3.5E+02 0.0076 25.8 11.3 33 177-209 17-49 (306)
243 PLN02514 cinnamyl-alcohol dehy 39.0 1.4E+02 0.003 29.5 8.2 48 179-231 183-230 (357)
244 PRK09754 phenylpropionate diox 38.8 2.2E+02 0.0048 28.6 9.7 52 180-231 147-205 (396)
245 cd08270 MDR4 Medium chain dehy 38.8 1.5E+02 0.0031 27.9 8.0 49 177-231 134-182 (305)
246 cd05188 MDR Medium chain reduc 38.7 1.1E+02 0.0023 27.9 6.9 46 178-230 137-182 (271)
247 PRK09242 tropinone reductase; 38.6 3.1E+02 0.0068 25.1 11.0 72 178-252 11-84 (257)
248 PRK15481 transcriptional regul 38.5 3.2E+02 0.007 27.7 11.0 51 180-235 144-195 (431)
249 PRK07775 short chain dehydroge 38.4 3.4E+02 0.0073 25.4 11.8 56 177-234 11-66 (274)
250 PRK07035 short chain dehydroge 38.1 3.1E+02 0.0068 25.0 17.5 82 177-261 9-90 (252)
251 PRK12828 short chain dehydroge 38.0 2.9E+02 0.0064 24.6 11.6 56 177-234 8-63 (239)
252 cd08277 liver_alcohol_DH_like 37.6 1.2E+02 0.0026 30.0 7.4 47 179-231 187-234 (365)
253 COG0026 PurK Phosphoribosylami 37.4 50 0.0011 33.6 4.6 32 179-210 3-34 (375)
254 PRK06198 short chain dehydroge 37.0 3.3E+02 0.0072 24.9 11.5 71 177-249 7-77 (260)
255 PRK07774 short chain dehydroge 37.0 3.2E+02 0.007 24.7 11.0 56 177-234 7-62 (250)
256 cd08246 crotonyl_coA_red croto 36.8 1.2E+02 0.0026 30.3 7.3 49 177-231 195-243 (393)
257 cd08243 quinone_oxidoreductase 36.7 1.4E+02 0.0031 28.0 7.6 49 177-231 144-192 (320)
258 PRK07102 short chain dehydroge 36.6 3E+02 0.0065 25.0 9.6 55 178-234 3-58 (243)
259 cd08254 hydroxyacyl_CoA_DH 6-h 36.6 1.5E+02 0.0032 28.3 7.8 48 178-232 168-215 (338)
260 PRK12831 putative oxidoreducta 36.0 97 0.0021 32.2 6.7 53 179-231 283-337 (464)
261 cd08298 CAD2 Cinnamyl alcohol 35.9 1.5E+02 0.0032 28.4 7.6 45 179-229 170-214 (329)
262 PF13460 NAD_binding_10: NADH( 35.9 1.4E+02 0.0031 25.8 7.0 32 179-210 1-32 (183)
263 cd08274 MDR9 Medium chain dehy 35.9 1.6E+02 0.0034 28.5 7.9 48 177-231 179-226 (350)
264 PRK09291 short chain dehydroge 35.7 2.1E+02 0.0046 26.1 8.4 54 178-233 4-57 (257)
265 PRK07063 short chain dehydroge 35.6 3.5E+02 0.0076 24.8 11.0 83 177-262 8-92 (260)
266 TIGR01830 3oxo_ACP_reduc 3-oxo 35.5 3.2E+02 0.007 24.4 10.5 54 180-234 2-55 (239)
267 cd01015 CSHase N-carbamoylsarc 35.3 2.1E+02 0.0047 25.3 8.1 61 171-231 109-173 (179)
268 COG2205 KdpD Osmosensitive K+ 35.3 5.9E+02 0.013 28.9 12.6 68 190-263 266-342 (890)
269 PRK12827 short chain dehydroge 35.2 3.4E+02 0.0073 24.4 11.7 58 177-234 7-66 (249)
270 PF01262 AlaDh_PNT_C: Alanine 35.2 1.6E+02 0.0036 25.8 7.2 49 179-233 22-70 (168)
271 PRK12747 short chain dehydroge 35.1 3.5E+02 0.0077 24.7 12.6 55 178-233 6-60 (252)
272 PTZ00317 NADP-dependent malic 35.0 1E+02 0.0023 33.1 6.8 87 107-201 227-325 (559)
273 cd08278 benzyl_alcohol_DH Benz 35.0 2.5E+02 0.0054 27.7 9.3 48 179-231 189-236 (365)
274 TIGR01751 crot-CoA-red crotony 34.8 1.3E+02 0.0028 30.2 7.3 49 177-231 191-239 (398)
275 PRK07067 sorbitol dehydrogenas 34.8 3.6E+02 0.0078 24.7 11.2 33 177-209 7-39 (257)
276 PRK06500 short chain dehydroge 34.6 3.5E+02 0.0075 24.4 11.6 53 177-234 7-59 (249)
277 PRK07814 short chain dehydroge 34.5 3.8E+02 0.0082 24.8 11.3 71 177-250 11-81 (263)
278 PRK07201 short chain dehydroge 34.4 3.2E+02 0.0069 29.3 10.6 82 177-261 372-453 (657)
279 TIGR03201 dearomat_had 6-hydro 34.4 1.3E+02 0.0029 29.4 7.2 48 178-231 168-215 (349)
280 cd05283 CAD1 Cinnamyl alcohol 34.4 1.5E+02 0.0032 28.8 7.4 47 178-231 172-218 (337)
281 PRK00779 ornithine carbamoyltr 34.3 1.7E+02 0.0037 28.9 7.8 53 179-232 155-208 (304)
282 TIGR01829 AcAcCoA_reduct aceto 34.1 3.5E+02 0.0075 24.3 11.7 72 178-251 2-73 (242)
283 PF07279 DUF1442: Protein of u 34.0 1.7E+02 0.0037 27.6 7.3 50 176-227 42-94 (218)
284 PRK10309 galactitol-1-phosphat 34.0 1.3E+02 0.0028 29.3 7.0 48 179-231 163-210 (347)
285 PLN02918 pyridoxine (pyridoxam 34.0 1.9E+02 0.0042 31.1 8.5 54 177-230 136-193 (544)
286 PRK12771 putative glutamate sy 33.8 1.5E+02 0.0032 31.6 7.9 54 178-231 138-206 (564)
287 KOG1506 S-adenosylmethionine s 33.6 36 0.00078 33.3 2.8 91 60-186 156-261 (383)
288 CHL00194 ycf39 Ycf39; Provisio 33.4 1.8E+02 0.004 28.0 7.9 32 178-209 2-33 (317)
289 cd08245 CAD Cinnamyl alcohol d 33.3 1.7E+02 0.0037 27.9 7.7 47 178-231 165-211 (330)
290 PF01041 DegT_DnrJ_EryC1: DegT 33.3 88 0.0019 31.1 5.7 63 172-238 36-98 (363)
291 PRK04965 NADH:flavorubredoxin 33.2 3.1E+02 0.0067 27.2 9.7 52 180-231 144-202 (377)
292 PRK06138 short chain dehydroge 33.2 3.7E+02 0.008 24.3 11.5 71 177-251 6-76 (252)
293 PRK06200 2,3-dihydroxy-2,3-dih 33.0 3.9E+02 0.0085 24.6 11.1 32 177-208 7-38 (263)
294 COG1167 ARO8 Transcriptional r 32.4 2.3E+02 0.005 29.4 8.8 86 176-270 155-242 (459)
295 PRK07818 dihydrolipoamide dehy 32.4 1.7E+02 0.0036 30.2 7.8 53 179-231 174-232 (466)
296 PRK08261 fabG 3-ketoacyl-(acyl 32.1 5.5E+02 0.012 26.1 11.5 55 177-234 211-265 (450)
297 TIGR01292 TRX_reduct thioredox 32.1 1.4E+02 0.0029 28.0 6.6 53 179-231 143-196 (300)
298 PRK12824 acetoacetyl-CoA reduc 32.0 3.8E+02 0.0082 24.1 11.8 71 178-250 4-74 (245)
299 cd08244 MDR_enoyl_red Possible 31.9 3.2E+02 0.0069 25.8 9.2 48 177-230 144-191 (324)
300 PRK06701 short chain dehydroge 31.9 4.5E+02 0.0099 25.0 15.7 71 177-249 47-117 (290)
301 cd08289 MDR_yhfp_like Yhfp put 31.9 1.3E+02 0.0029 28.6 6.6 49 177-231 148-196 (326)
302 cd05280 MDR_yhdh_yhfp Yhdh and 31.8 2.3E+02 0.0051 26.7 8.3 49 177-231 148-196 (325)
303 cd08260 Zn_ADH6 Alcohol dehydr 31.7 1.7E+02 0.0037 28.3 7.4 44 178-228 168-211 (345)
304 PLN03129 NADP-dependent malic 31.5 1.3E+02 0.0027 32.7 6.7 84 108-198 251-342 (581)
305 PLN02827 Alcohol dehydrogenase 31.5 2E+02 0.0043 28.8 7.9 50 177-231 194-243 (378)
306 PRK12384 sorbitol-6-phosphate 31.4 4.1E+02 0.0089 24.3 11.8 32 178-209 4-35 (259)
307 PRK09257 aromatic amino acid a 31.3 3.1E+02 0.0066 27.4 9.3 74 155-234 68-149 (396)
308 PRK12745 3-ketoacyl-(acyl-carr 31.3 4E+02 0.0087 24.2 15.5 73 178-252 4-76 (256)
309 PRK07576 short chain dehydroge 30.8 4.4E+02 0.0095 24.4 11.4 72 177-251 10-81 (264)
310 PRK13529 malate dehydrogenase; 30.8 1.3E+02 0.0027 32.5 6.5 87 107-201 225-323 (563)
311 PRK09422 ethanol-active dehydr 30.6 3.1E+02 0.0068 26.2 9.0 48 178-232 165-213 (338)
312 PRK06924 short chain dehydroge 30.5 3.5E+02 0.0075 24.6 8.9 32 178-209 3-34 (251)
313 TIGR03385 CoA_CoA_reduc CoA-di 30.3 2.9E+02 0.0062 28.0 9.0 52 180-231 140-198 (427)
314 PRK11609 nicotinamidase/pyrazi 30.1 3.2E+02 0.007 24.8 8.6 60 172-231 138-203 (212)
315 PRK08220 2,3-dihydroxybenzoate 30.0 4.2E+02 0.0091 24.0 10.1 33 177-209 9-41 (252)
316 PRK15408 autoinducer 2-binding 29.9 5.5E+02 0.012 25.3 18.8 46 282-330 196-243 (336)
317 cd08269 Zn_ADH9 Alcohol dehydr 29.9 3E+02 0.0065 25.8 8.6 48 177-231 131-179 (312)
318 PRK10490 sensor protein KdpD; 29.8 6.9E+02 0.015 28.4 12.7 111 178-305 252-375 (895)
319 cd08258 Zn_ADH4 Alcohol dehydr 29.7 4E+02 0.0086 25.4 9.5 46 178-228 167-212 (306)
320 cd01013 isochorismatase Isocho 29.7 2.7E+02 0.0059 25.3 7.9 61 171-231 137-201 (203)
321 PRK12809 putative oxidoreducta 29.6 1.9E+02 0.0041 31.5 7.9 55 178-232 311-380 (639)
322 PF12831 FAD_oxidored: FAD dep 29.5 61 0.0013 33.2 3.9 30 180-209 2-31 (428)
323 PRK07825 short chain dehydroge 29.5 4.6E+02 0.01 24.3 11.2 32 177-208 6-37 (273)
324 PRK06115 dihydrolipoamide dehy 29.4 2E+02 0.0044 29.7 7.8 53 179-231 176-234 (466)
325 PRK06180 short chain dehydroge 29.3 4.7E+02 0.01 24.4 11.0 33 177-209 5-37 (277)
326 PRK01438 murD UDP-N-acetylmura 29.3 2.2E+02 0.0047 29.5 8.0 50 180-230 19-68 (480)
327 PRK05447 1-deoxy-D-xylulose 5- 29.3 6.5E+02 0.014 25.9 13.5 54 178-234 3-58 (385)
328 cd08285 NADP_ADH NADP(H)-depen 29.1 1.9E+02 0.0042 28.1 7.3 48 179-231 169-216 (351)
329 PLN02342 ornithine carbamoyltr 29.0 2.4E+02 0.0053 28.5 8.0 45 187-232 205-250 (348)
330 PRK07453 protochlorophyllide o 28.7 5.3E+02 0.012 24.7 10.8 32 177-208 7-38 (322)
331 PRK06079 enoyl-(acyl carrier p 28.7 4.7E+02 0.01 24.1 10.1 31 178-208 9-41 (252)
332 PRK05855 short chain dehydroge 28.5 6E+02 0.013 26.2 11.3 72 177-251 316-387 (582)
333 TIGR02817 adh_fam_1 zinc-bindi 28.5 2.3E+02 0.0049 27.1 7.6 48 178-231 151-199 (336)
334 PF13450 NAD_binding_8: NAD(P) 28.3 84 0.0018 23.5 3.6 26 184-209 3-28 (68)
335 PF02737 3HCDH_N: 3-hydroxyacy 28.2 92 0.002 28.0 4.4 31 180-210 2-32 (180)
336 PF01494 FAD_binding_3: FAD bi 28.2 76 0.0016 30.3 4.2 30 180-209 4-33 (356)
337 cd08299 alcohol_DH_class_I_II_ 28.1 2E+02 0.0043 28.6 7.3 46 179-229 193-238 (373)
338 PRK06953 short chain dehydroge 28.0 3.8E+02 0.0083 24.0 8.7 51 178-234 3-53 (222)
339 cd08288 MDR_yhdh Yhdh putative 27.8 1.8E+02 0.0038 27.7 6.6 48 178-231 149-196 (324)
340 PRK05786 fabG 3-ketoacyl-(acyl 27.8 4.5E+02 0.0097 23.6 9.4 33 177-209 6-38 (238)
341 cd05288 PGDH Prostaglandin deh 27.8 3.7E+02 0.008 25.5 8.9 49 177-231 147-196 (329)
342 PRK07231 fabG 3-ketoacyl-(acyl 27.7 4.5E+02 0.0098 23.6 11.5 33 177-209 6-38 (251)
343 PRK06847 hypothetical protein; 27.6 84 0.0018 30.9 4.5 28 180-207 7-34 (375)
344 PRK08264 short chain dehydroge 27.5 3.1E+02 0.0067 24.7 8.0 33 177-209 7-40 (238)
345 PF00890 FAD_binding_2: FAD bi 27.5 72 0.0016 32.1 4.0 30 180-209 2-31 (417)
346 PF05185 PRMT5: PRMT5 arginine 27.2 1.2E+02 0.0026 31.7 5.6 36 297-332 188-224 (448)
347 PRK07904 short chain dehydroge 27.2 5E+02 0.011 24.0 9.7 55 178-233 10-66 (253)
348 smart00822 PKS_KR This enzymat 27.2 3.6E+02 0.0078 22.3 10.5 57 178-234 2-60 (180)
349 PLN02702 L-idonate 5-dehydroge 27.1 2.7E+02 0.0059 27.2 8.0 49 178-232 184-232 (364)
350 PRK08339 short chain dehydroge 27.1 4.3E+02 0.0093 24.6 9.1 32 177-208 9-40 (263)
351 TIGR01064 pyruv_kin pyruvate k 27.1 5.6E+02 0.012 27.0 10.6 34 173-208 371-404 (473)
352 PRK11891 aspartate carbamoyltr 27.0 2E+02 0.0043 30.0 7.1 53 180-233 244-300 (429)
353 PRK07060 short chain dehydroge 26.9 4.7E+02 0.01 23.5 9.8 53 177-234 10-62 (245)
354 cd08282 PFDH_like Pseudomonas 26.9 2.6E+02 0.0055 27.7 7.8 46 178-229 179-224 (375)
355 cd08259 Zn_ADH5 Alcohol dehydr 26.9 2.7E+02 0.0059 26.3 7.8 48 177-230 164-211 (332)
356 PF00732 GMC_oxred_N: GMC oxid 26.8 73 0.0016 30.3 3.7 35 297-333 1-35 (296)
357 COG1064 AdhP Zn-dependent alco 26.3 3.4E+02 0.0073 27.4 8.4 54 175-234 165-218 (339)
358 TIGR00658 orni_carb_tr ornithi 26.2 2.9E+02 0.0063 27.2 7.9 47 186-233 158-208 (304)
359 cd01075 NAD_bind_Leu_Phe_Val_D 26.2 5E+02 0.011 23.6 9.0 29 178-206 29-57 (200)
360 cd05279 Zn_ADH1 Liver alcohol 26.1 3.6E+02 0.0079 26.5 8.7 46 178-229 186-231 (365)
361 PRK12548 shikimate 5-dehydroge 26.1 2.9E+02 0.0064 26.7 7.8 30 179-208 128-158 (289)
362 PLN03049 pyridoxine (pyridoxam 26.0 3.1E+02 0.0066 28.8 8.4 54 177-230 60-117 (462)
363 PRK08642 fabG 3-ketoacyl-(acyl 26.0 4.9E+02 0.011 23.5 10.6 33 177-209 6-38 (253)
364 cd06353 PBP1_BmpA_Med_like Per 26.0 5.6E+02 0.012 24.1 13.7 129 190-331 21-160 (258)
365 PLN02253 xanthoxin dehydrogena 26.0 5.4E+02 0.012 23.9 10.7 32 177-208 19-50 (280)
366 PRK13982 bifunctional SbtC-lik 26.0 1.1E+02 0.0023 32.3 5.0 43 183-234 279-321 (475)
367 cd08250 Mgc45594_like Mgc45594 25.8 2.5E+02 0.0055 26.7 7.4 49 177-231 141-189 (329)
368 PRK13376 pyrB bifunctional asp 25.8 3.6E+02 0.0077 28.9 8.8 54 179-233 176-233 (525)
369 PRK10754 quinone oxidoreductas 25.7 5E+02 0.011 24.6 9.4 48 177-230 142-189 (327)
370 PRK07856 short chain dehydroge 25.6 5.2E+02 0.011 23.6 9.5 33 177-209 7-39 (252)
371 PRK12562 ornithine carbamoyltr 25.6 2.2E+02 0.0048 28.5 7.0 55 179-233 158-217 (334)
372 KOG1201 Hydroxysteroid 17-beta 25.6 6E+02 0.013 25.2 9.7 67 177-246 39-105 (300)
373 PLN02583 cinnamoyl-CoA reducta 25.6 3.9E+02 0.0084 25.5 8.6 33 177-209 7-39 (297)
374 PRK09126 hypothetical protein; 25.5 80 0.0017 31.3 3.9 29 180-208 6-34 (392)
375 PRK13512 coenzyme A disulfide 25.4 4.4E+02 0.0096 26.9 9.4 51 180-230 151-207 (438)
376 PF02540 NAD_synthase: NAD syn 25.4 4.7E+02 0.01 24.7 8.9 64 171-234 13-81 (242)
377 COG2242 CobL Precorrin-6B meth 25.3 1.3E+02 0.0028 27.8 4.7 78 283-361 20-98 (187)
378 PRK06482 short chain dehydroge 25.2 5.5E+02 0.012 23.8 11.3 32 178-209 4-35 (276)
379 PF04989 CmcI: Cephalosporin h 24.9 2.6E+02 0.0055 26.2 6.8 45 283-333 25-71 (206)
380 PRK05875 short chain dehydroge 24.9 5.5E+02 0.012 23.7 10.7 33 177-209 8-40 (276)
381 PRK04523 N-acetylornithine car 24.9 3.3E+02 0.0072 27.2 8.1 48 186-233 185-236 (335)
382 PRK05476 S-adenosyl-L-homocyst 24.8 2.5E+02 0.0054 29.2 7.3 30 177-206 212-241 (425)
383 PRK06484 short chain dehydroge 24.7 6.2E+02 0.013 26.1 10.5 70 177-252 6-75 (520)
384 PRK07326 short chain dehydroge 24.6 5.1E+02 0.011 23.2 11.7 32 177-208 7-38 (237)
385 PRK07024 short chain dehydroge 24.4 5.5E+02 0.012 23.5 10.7 31 178-208 4-34 (257)
386 cd08267 MDR1 Medium chain dehy 24.3 2.9E+02 0.0063 25.8 7.4 45 178-229 146-190 (319)
387 PF13478 XdhC_C: XdhC Rossmann 24.3 79 0.0017 27.3 3.1 30 181-210 2-31 (136)
388 cd08251 polyketide_synthase po 24.3 5.2E+02 0.011 23.7 9.1 46 178-229 123-168 (303)
389 PRK04284 ornithine carbamoyltr 24.3 2.1E+02 0.0045 28.7 6.5 53 180-233 158-216 (332)
390 PRK07251 pyridine nucleotide-d 24.3 2.9E+02 0.0062 28.1 7.8 52 180-231 160-217 (438)
391 PF13407 Peripla_BP_4: Peripla 24.2 5.4E+02 0.012 23.3 14.9 134 188-327 16-158 (257)
392 PRK11706 TDP-4-oxo-6-deoxy-D-g 24.1 3.1E+02 0.0068 27.3 7.9 59 174-236 44-102 (375)
393 PRK09564 coenzyme A disulfide 24.1 4.8E+02 0.01 26.4 9.4 52 179-230 151-209 (444)
394 PRK05396 tdh L-threonine 3-deh 24.0 3.9E+02 0.0085 25.7 8.4 48 178-231 166-213 (341)
395 cd05286 QOR2 Quinone oxidoredu 24.0 5.4E+02 0.012 23.6 9.1 48 178-231 139-186 (320)
396 PRK02102 ornithine carbamoyltr 24.0 3.4E+02 0.0074 27.2 7.9 53 180-233 158-216 (331)
397 PRK08227 autoinducer 2 aldolas 24.0 6.7E+02 0.014 24.3 10.2 71 164-234 96-179 (264)
398 cd08279 Zn_ADH_class_III Class 23.9 5.3E+02 0.011 25.2 9.4 46 178-229 185-230 (363)
399 PRK05976 dihydrolipoamide dehy 23.7 2.9E+02 0.0062 28.5 7.7 53 179-231 182-240 (472)
400 PRK14694 putative mercuric red 23.7 3.4E+02 0.0073 28.0 8.2 53 179-231 180-237 (468)
401 PRK05717 oxidoreductase; Valid 23.6 5.7E+02 0.012 23.3 16.9 70 177-252 11-80 (255)
402 TIGR00936 ahcY adenosylhomocys 23.5 2.1E+02 0.0046 29.5 6.5 30 177-206 195-224 (406)
403 cd08262 Zn_ADH8 Alcohol dehydr 23.5 3.6E+02 0.0078 25.9 8.0 46 179-229 164-209 (341)
404 PRK12779 putative bifunctional 23.5 2.5E+02 0.0053 32.3 7.6 55 177-231 306-375 (944)
405 PRK10669 putative cation:proto 23.5 3E+02 0.0066 29.2 8.0 50 179-234 419-468 (558)
406 cd05282 ETR_like 2-enoyl thioe 23.4 3.6E+02 0.0077 25.4 7.9 46 178-229 141-186 (323)
407 TIGR00689 rpiB_lacA_lacB sugar 23.3 5.1E+02 0.011 22.7 8.2 67 175-251 55-122 (144)
408 PRK05571 ribose-5-phosphate is 23.3 5.2E+02 0.011 22.8 8.2 67 175-251 58-125 (148)
409 PRK06101 short chain dehydroge 23.3 5.1E+02 0.011 23.5 8.6 31 178-208 3-33 (240)
410 TIGR01289 LPOR light-dependent 23.3 6.8E+02 0.015 24.1 11.3 32 178-209 5-37 (314)
411 cd08286 FDH_like_ADH2 formalde 23.3 3E+02 0.0065 26.5 7.4 45 178-229 169-214 (345)
412 PRK03515 ornithine carbamoyltr 23.2 3.6E+02 0.0078 27.0 8.0 54 179-233 158-217 (336)
413 PRK08192 aspartate carbamoyltr 23.1 2.8E+02 0.0062 27.8 7.2 54 179-233 161-218 (338)
414 PF13561 adh_short_C2: Enoyl-( 22.9 4.7E+02 0.01 23.8 8.3 67 184-254 4-70 (241)
415 PRK14727 putative mercuric red 22.8 3E+02 0.0066 28.5 7.7 52 179-230 190-246 (479)
416 cd08261 Zn_ADH7 Alcohol dehydr 22.8 6.2E+02 0.013 24.2 9.5 45 178-229 162-206 (337)
417 cd08234 threonine_DH_like L-th 22.7 5.9E+02 0.013 24.1 9.3 45 178-228 162-206 (334)
418 PRK11749 dihydropyrimidine deh 22.7 2.3E+02 0.005 29.1 6.8 53 179-231 275-330 (457)
419 PRK12742 oxidoreductase; Provi 22.5 5.6E+02 0.012 22.9 9.0 54 177-234 7-60 (237)
420 cd08235 iditol_2_DH_like L-idi 22.5 6.2E+02 0.013 24.2 9.4 47 178-230 168-214 (343)
421 TIGR02823 oxido_YhdH putative 22.4 3.9E+02 0.0085 25.3 7.9 48 178-231 148-195 (323)
422 PRK06753 hypothetical protein; 22.4 1E+02 0.0023 30.3 4.0 29 180-208 3-31 (373)
423 PRK12810 gltD glutamate syntha 22.3 3.6E+02 0.0078 27.9 8.1 53 179-231 145-212 (471)
424 PLN02527 aspartate carbamoyltr 22.2 2.9E+02 0.0062 27.3 7.0 53 180-233 154-210 (306)
425 PRK06179 short chain dehydroge 22.2 6.2E+02 0.013 23.3 9.3 33 177-209 5-37 (270)
426 COG0334 GdhA Glutamate dehydro 22.1 3.1E+02 0.0068 28.4 7.3 47 162-208 188-238 (411)
427 PRK08849 2-octaprenyl-3-methyl 22.1 1.1E+02 0.0023 30.6 4.0 29 180-208 6-34 (384)
428 TIGR02032 GG-red-SF geranylger 22.0 1.2E+02 0.0026 28.3 4.1 30 180-209 3-32 (295)
429 TIGR01318 gltD_gamma_fam gluta 21.8 3.5E+02 0.0075 28.1 7.9 53 179-231 143-210 (467)
430 cd08232 idonate-5-DH L-idonate 21.7 3E+02 0.0065 26.4 7.0 47 177-229 167-213 (339)
431 cd00288 Pyruvate_Kinase Pyruva 21.7 5.8E+02 0.013 27.0 9.5 14 196-209 371-384 (480)
432 cd08253 zeta_crystallin Zeta-c 21.7 6.4E+02 0.014 23.3 9.6 49 177-231 146-194 (325)
433 cd08290 ETR 2-enoyl thioester 21.6 4.4E+02 0.0094 25.2 8.2 51 179-231 150-200 (341)
434 KOG1014 17 beta-hydroxysteroid 21.5 8.2E+02 0.018 24.4 12.1 59 174-234 48-106 (312)
435 PRK06125 short chain dehydroge 21.4 6.3E+02 0.014 23.1 9.5 32 177-208 8-39 (259)
436 PRK14027 quinate/shikimate deh 21.4 6.2E+02 0.013 24.5 9.1 68 143-210 92-160 (283)
437 KOG0024 Sorbitol dehydrogenase 21.4 6.1E+02 0.013 25.7 8.9 55 175-234 168-222 (354)
438 PRK10083 putative oxidoreducta 21.3 4E+02 0.0086 25.5 7.8 50 177-231 161-211 (339)
439 PRK14619 NAD(P)H-dependent gly 21.3 7.5E+02 0.016 23.9 10.1 50 180-235 7-56 (308)
440 PRK06019 phosphoribosylaminoim 21.3 1.5E+02 0.0032 29.7 4.9 30 180-209 5-34 (372)
441 PLN02621 nicotinamidase 21.3 5.1E+02 0.011 23.3 8.1 60 172-231 123-186 (197)
442 PTZ00376 aspartate aminotransf 21.2 8.4E+02 0.018 24.4 10.6 109 155-270 71-191 (404)
443 PRK12778 putative bifunctional 21.1 2.1E+02 0.0045 31.8 6.3 53 179-231 572-627 (752)
444 PRK07538 hypothetical protein; 21.1 1.1E+02 0.0024 30.8 3.9 29 180-208 3-31 (413)
445 TIGR01988 Ubi-OHases Ubiquinon 21.0 1.1E+02 0.0024 29.9 3.9 30 180-209 2-31 (385)
446 PF02826 2-Hacid_dh_C: D-isome 21.0 1.9E+02 0.0042 25.7 5.1 116 178-331 37-154 (178)
447 PF10686 DUF2493: Protein of u 20.9 2.8E+02 0.0061 21.2 5.2 51 159-209 14-66 (71)
448 PRK08306 dipicolinate synthase 20.9 2.9E+02 0.0062 27.0 6.6 46 179-230 154-199 (296)
449 PRK02610 histidinol-phosphate 20.9 5.5E+02 0.012 25.4 8.9 52 180-234 94-145 (374)
450 PF02570 CbiC: Precorrin-8X me 20.7 6.1E+02 0.013 23.6 8.3 12 198-209 81-92 (198)
451 PRK06370 mercuric reductase; V 20.4 4E+02 0.0086 27.4 8.0 53 179-231 173-231 (463)
452 PF00465 Fe-ADH: Iron-containi 20.4 3.7E+02 0.0081 26.7 7.5 28 203-234 2-29 (366)
453 PF12831 FAD_oxidored: FAD dep 20.3 1.5E+02 0.0033 30.3 4.8 33 298-333 1-33 (428)
454 PRK05249 soluble pyridine nucl 20.3 4E+02 0.0087 27.2 7.9 53 179-231 177-235 (461)
455 PRK02255 putrescine carbamoylt 20.3 4.4E+02 0.0095 26.4 7.9 47 186-233 164-214 (338)
456 PRK06484 short chain dehydroge 20.3 9.5E+02 0.021 24.7 11.1 71 177-253 270-340 (520)
457 cd08241 QOR1 Quinone oxidoredu 20.2 6.9E+02 0.015 23.0 9.4 48 178-231 142-189 (323)
458 PF13686 DrsE_2: DsrE/DsrF/Drs 20.2 1.6E+02 0.0036 25.8 4.3 30 179-208 5-39 (148)
459 TIGR02853 spore_dpaA dipicolin 20.2 3.7E+02 0.008 26.1 7.2 46 178-229 152-197 (287)
460 cd08263 Zn_ADH10 Alcohol dehyd 20.1 5.7E+02 0.012 25.0 8.8 47 178-230 190-236 (367)
461 TIGR01317 GOGAT_sm_gam glutama 20.1 3.5E+02 0.0076 28.3 7.5 53 179-231 145-212 (485)
No 1
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-84 Score=616.75 Aligned_cols=308 Identities=71% Similarity=1.132 Sum_probs=303.3
Q ss_pred CCCCCCCCccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEE
Q 016830 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY 147 (382)
Q Consensus 68 ~~~~~~~~~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~Iy 147 (382)
..||.+|+||.|||+||||+||+.+++|+++|.+.+.||+|++++...+++|+||||||+.+++|++.+ +++||
T Consensus 1 ~~~~~~g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~------gakiy 74 (396)
T COG0133 1 AYPDEKGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHL------GAKIY 74 (396)
T ss_pred CCCccCCcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhh------CceEE
Confidence 368999999999999999999999999999999999999999999999999999999999999999998 79999
Q ss_pred EeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCC
Q 016830 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (382)
Q Consensus 148 lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GA 227 (382)
+||||+||||+||++.++.++++|+++||+++|+|+++|+||+|.|.+|+++|++|+|||...+.+||..|+.+|+.+||
T Consensus 75 LKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA 154 (396)
T COG0133 75 LKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGA 154 (396)
T ss_pred EehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChh
Q 016830 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307 (382)
Q Consensus 228 eVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~G 307 (382)
+|++|..++.+++||+.+++|+|+.+.++++|++++..+|||||.+|++||.+||.|+.+||+++.|..||+||+|||||
T Consensus 155 ~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGG 234 (396)
T COG0133 155 EVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG 234 (396)
T ss_pred eEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHhhhhhhcCCCcEEEEEeCCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCCC
Q 016830 308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW 381 (382)
Q Consensus 308 G~~aGi~~~~~~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~~ 381 (382)
+|+.|++..|..+++|++||||+.|.++.+++|+++|+.|++|++||+++|+|||++|||.+.||||||||||+
T Consensus 235 SNAiG~F~~Fi~d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPg 308 (396)
T COG0133 235 SNAIGIFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPG 308 (396)
T ss_pred cchhhhcccccCCCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999997
No 2
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=7.1e-74 Score=576.13 Aligned_cols=309 Identities=71% Similarity=1.139 Sum_probs=294.3
Q ss_pred CCCCCCCCccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEE
Q 016830 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY 147 (382)
Q Consensus 68 ~~~~~~~~~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~Iy 147 (382)
+.||++|+||.|||+||||+||+.+++|+++|.+.+.|++|+++++..+++|+|+||||+++++|++.+ ++.+||
T Consensus 3 ~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~-----gg~~Iy 77 (397)
T PRK04346 3 TLPDENGYFGEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHL-----GGAKIY 77 (397)
T ss_pred CCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHc-----CCCeEE
Confidence 479999999999999999999999999999999999999999999999999999999999999999987 478999
Q ss_pred EeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCC
Q 016830 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (382)
Q Consensus 148 lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GA 227 (382)
+|+|++|||||||+|+++++++.|+++|++++|+++|+||||+|+|++|+++|++|+||||+.+.++++.|+.+|+.+||
T Consensus 78 lK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA 157 (397)
T PRK04346 78 LKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGA 157 (397)
T ss_pred EEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCC
Confidence 99999999999999999999999999999988988999999999999999999999999999776677789999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChh
Q 016830 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307 (382)
Q Consensus 228 eVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~G 307 (382)
+|+.|+.+..++++++.++.++|.++.++.+|++++..|+|||+.+|+++|.++|.|+.+|+.++.+..||+||+|||+|
T Consensus 158 ~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgG 237 (397)
T PRK04346 158 EVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG 237 (397)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCcc
Confidence 99999876678999999999988887777899999999999999899999999999999999888877899999999999
Q ss_pred hHHhHhhhhhhcCCCcEEEEEeCCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCCC
Q 016830 308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW 381 (382)
Q Consensus 308 G~~aGi~~~~~~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~~ 381 (382)
||++|++.+|+.++++|||||||.|++.+++.|++++..|.++++||+++|++||++||+.++||||+|||||.
T Consensus 238 g~~~Gi~~~f~~~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pg 311 (397)
T PRK04346 238 SNAIGIFHPFIDDESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPG 311 (397)
T ss_pred HhHHHHHHHHhhCCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCC
Confidence 99999999998889999999999999988889999999999999999999999999999999999999999995
No 3
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1.9e-73 Score=574.24 Aligned_cols=323 Identities=87% Similarity=1.363 Sum_probs=302.7
Q ss_pred ccCCCCCCCCCCCCCCCccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcC
Q 016830 59 KKESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRR 138 (382)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~ 138 (382)
.++.+|+....||.+|+||.|||+||||+||+.|++|+++|++++.|++|++|+..++++|+||||||+++++|++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~ 81 (410)
T PLN02618 2 PPGSDPTGFQRPDSFGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERLTEHYKR 81 (410)
T ss_pred CCCCCchhccCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhcc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999998732
Q ss_pred CCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHH
Q 016830 139 PNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALN 218 (382)
Q Consensus 139 ~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~k 218 (382)
.+++|.+||+|+|++|||||||+|+++++++.+++++++++|+++|+||||+|+|++|+++|++|+||||+.+.+++..|
T Consensus 82 ~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~n 161 (410)
T PLN02618 82 ADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALN 161 (410)
T ss_pred ccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhh
Confidence 22236899999999999999999999999999999999888889999999999999999999999999999777778889
Q ss_pred HHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCC
Q 016830 219 VFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPD 298 (382)
Q Consensus 219 v~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD 298 (382)
+.+|+.|||+|+.++.+..++++++.++.++|.++.++.+|++++..|+|||+.+++++|.++|.|+.+|++++.+..||
T Consensus 162 v~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD 241 (410)
T PLN02618 162 VFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPD 241 (410)
T ss_pred HHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999875578999988888888887778899999999999998899999999999999999998887899
Q ss_pred EEEEcCChhhHHhHhhhhhhcCCCcEEEEEeCCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCC
Q 016830 299 VLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLP 378 (382)
Q Consensus 299 ~vvvpvG~GG~~aGi~~~~~~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~ 378 (382)
+||+|||+|||++|++.+|+.++++|||||||+|++...+.|++++..|++|++||.++|+|||+++|+.++||||+|||
T Consensus 242 ~VV~~VGgGg~~~Gi~~~f~~~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~ 321 (410)
T PLN02618 242 VLVACVGGGSNAMGLFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLD 321 (410)
T ss_pred EEEEEeCchHHHHHHHHHHHhCCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhc
Confidence 99999999999999999998789999999999999888889999999999999999999999999999999999999999
Q ss_pred CCC
Q 016830 379 WSW 381 (382)
Q Consensus 379 ~~~ 381 (382)
||.
T Consensus 322 ~pg 324 (410)
T PLN02618 322 YPG 324 (410)
T ss_pred CCC
Confidence 996
No 4
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5.1e-71 Score=556.24 Aligned_cols=312 Identities=61% Similarity=0.975 Sum_probs=293.7
Q ss_pred CCCCCCCCCCCccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCC
Q 016830 65 APWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGP 144 (382)
Q Consensus 65 ~~~~~~~~~~~~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~ 144 (382)
++...||++|+||.|||+||||+||+.|++|+++|.+++.|++|++|++..+++|+|+||||+++++|++.+ ++.
T Consensus 4 ~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~-----Gg~ 78 (402)
T PRK13028 4 YLKSMPDADGFFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEEL-----GGA 78 (402)
T ss_pred ccccCCCCCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhc-----CCC
Confidence 455689999999999999999999999999999999999999999999999999999999999999999987 478
Q ss_pred eEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHH
Q 016830 145 HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL 224 (382)
Q Consensus 145 ~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~ 224 (382)
+||+|+|++|||||||+|+++++++.++++|++++|+++|+||||+|+|++|+++|++|+||||+.+++++..|+++|+.
T Consensus 79 ~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~ 158 (402)
T PRK13028 79 QIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKL 158 (402)
T ss_pred eEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999877777789999999
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcC
Q 016830 225 LGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACV 304 (382)
Q Consensus 225 ~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpv 304 (382)
+||+|+.++.+..++++++++++++|.++.++.+|++++..|+|||+.+++++|.++|.|+.+|+.++.+..||+||+||
T Consensus 159 ~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~V 238 (402)
T PRK13028 159 LGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACV 238 (402)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEc
Confidence 99999999876678999999888888877667889999999999998889899999999999999888777899999999
Q ss_pred ChhhHHhHhhhhhhcCCCcEEEEEeCCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCCC
Q 016830 305 GGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW 381 (382)
Q Consensus 305 G~GG~~aGi~~~~~~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~~ 381 (382)
|+|||++|++.+|+.+++++||||||.|.+...+.|++++..|.++++||.++|+|||++||+.++||||+|||||.
T Consensus 239 GgGg~~~Gi~~~f~~~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~ 315 (402)
T PRK13028 239 GGGSNAIGLFSAFLDDESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPG 315 (402)
T ss_pred CchHHHHHHHHHHHhCCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCC
Confidence 99999999999998679999999999998888889999999999999999999999999999999999999999985
No 5
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-70 Score=524.84 Aligned_cols=366 Identities=57% Similarity=0.888 Sum_probs=332.0
Q ss_pred cccCCcccccccCcccccccCCCCCCcccccccc---cccccccceeeeecCCccccccccCCCCCCCCCCCCCCCccCC
Q 016830 3 VATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTA---SPAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRF 79 (382)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (382)
|+-+.++|-++ |-.+..+.+..-.|...-+. -.++..+..|.+++.++.-+. ...++.-++.| .+||+|
T Consensus 8 v~~~v~~~~~~---s~lt~~rk~~~~~k~~~~~slr~~~~~~~t~~~sva~~p~~~~~--l~~d~~~~~~P---~r~gkf 79 (477)
T KOG1395|consen 8 VSPQVGDCQGF---SDLTLKRKSNQATKYSNGSSLRVKAALRFTHNKSVAEIPPQWYN--LVADLSVKPPP---PRFGKF 79 (477)
T ss_pred cccCCcccccc---CCcccccChhhhcccccCCccccccccccccCceeeeCCHHHHh--ccCchhhcCCC---cccccc
Confidence 55566666543 44455444433333322222 223358899999999998874 55666666665 899999
Q ss_pred CCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCc
Q 016830 80 GGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAH 159 (382)
Q Consensus 80 GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSf 159 (382)
||.|+||.|+..|.+|+..+.....|+.||+++..+.+ |+||||||++++||.+++++ +++||+|+|++||||||
T Consensus 80 gg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~-y~gRpspL~~AkRLte~~q~----ga~IylKrEdlnh~GsH 154 (477)
T KOG1395|consen 80 GGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYK-YLGRPSPLIRAKRLTEHCQT----GARIYLKREDLNHTGSH 154 (477)
T ss_pred CCccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HcCCCchhHHHHHHHHHhCC----CCEEEEEecCCCccccC
Confidence 99999999999999999999999999999999999876 89999999999999999943 89999999999999999
Q ss_pred ccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCH
Q 016830 160 KINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239 (382)
Q Consensus 160 K~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~ 239 (382)
|++.|+.+++.++++|++++|.++++|+||+|+|.+|+++|++|+|+|...+.+++..|+.+||.+||+|+.+..+..++
T Consensus 155 KiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tL 234 (477)
T KOG1395|consen 155 KINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTL 234 (477)
T ss_pred CcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhhc
Q 016830 240 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN 319 (382)
Q Consensus 240 ~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~~ 319 (382)
+|+..++.+.|+++.+..+|++++..++|||+.+++.+|.+||.|+..|..|.++..||+||.|+|||+|.+|++.-|+.
T Consensus 235 rda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~ 314 (477)
T KOG1395|consen 235 RDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR 314 (477)
T ss_pred hcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEeCCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCCC
Q 016830 320 DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW 381 (382)
Q Consensus 320 ~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~~ 381 (382)
+..+++||||..+-+.+..+|+++|+.|..|+.||.++|+|||+||||.++||||||||||+
T Consensus 315 dk~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpG 376 (477)
T KOG1395|consen 315 DKSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPG 376 (477)
T ss_pred cchhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999996
No 6
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.2e-67 Score=554.60 Aligned_cols=309 Identities=57% Similarity=0.944 Sum_probs=282.3
Q ss_pred CCCCCCCccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchh----hcCCCCCCC
Q 016830 69 RPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEH----YRRPNGGGP 144 (382)
Q Consensus 69 ~~~~~~~~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~----l~~~~~~g~ 144 (382)
+.-.+||||.|||+||||+||+.|++|+++|.+.+.|++|++|++..+++|+|+||||+++++|++. + +++.
T Consensus 272 ~~~~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~----G~g~ 347 (695)
T PRK13802 272 SEHQGPYWGQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKT----GLDA 347 (695)
T ss_pred ccCCCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhc----CCCc
Confidence 3345799999999999999999999999999999999999999999999999999999999998753 4 1248
Q ss_pred eEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHH
Q 016830 145 HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL 224 (382)
Q Consensus 145 ~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~ 224 (382)
+||+|+|++|||||||+|+++++++.++++|++++|+++|+||||+|+|++|+++|++|+||||+.+..++..|+.+|+.
T Consensus 348 ~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~ 427 (695)
T PRK13802 348 RVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRM 427 (695)
T ss_pred eEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHH
Confidence 99999999999999999999999999999999989999999999999999999999999999999765667789999999
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhC-CCCCEEEEc
Q 016830 225 LGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG-GKPDVLIAC 303 (382)
Q Consensus 225 ~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g-~~pD~vvvp 303 (382)
|||+|+.++.+..+++++++++.++|.++.++.+|+++|+.|+|||+.+++++|.++|.|+.+|+.+..| ..||+||+|
T Consensus 428 lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~ 507 (695)
T PRK13802 428 LGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICAC 507 (695)
T ss_pred cCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEc
Confidence 9999999986555789988888888887766678999999999999888999999999999999865444 269999999
Q ss_pred CChhhHHhHhhhhhhcCCCcEEEEEeCCCCCCCCccccccccC--CcceeeCCCcceeeecCCccccccccccCCCCCCC
Q 016830 304 VGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSK--GEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW 381 (382)
Q Consensus 304 vG~GG~~aGi~~~~~~~~~vrViGVep~g~~~~~~~~~~sl~~--G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~~ 381 (382)
||+|||++|++.+|+.++++|||||||++++...+.|+.++.. |.+|++||+++|+++|++||+.+.||||+|||||+
T Consensus 508 VGgGg~~~Gi~~~f~~~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~g 587 (695)
T PRK13802 508 VGGGSNAIGVMNAFLDDERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYAS 587 (695)
T ss_pred CCchHHHHHHHHHHHhCCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCC
Confidence 9999999999999987899999999999987777778888875 68999999999999999999999999999999996
No 7
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.1e-66 Score=548.39 Aligned_cols=307 Identities=62% Similarity=1.034 Sum_probs=288.9
Q ss_pred CCCCCCCccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEE
Q 016830 69 RPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYL 148 (382)
Q Consensus 69 ~~~~~~~~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~Iyl 148 (382)
.||.+||||.|||+||||+||+.|++|+++|.+.+.|++|+++++..+++|+|+||||+++++|++.+ |.+||+
T Consensus 217 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grpTPL~~~~~Ls~~~------G~~Iyl 290 (610)
T PRK13803 217 LSDPAGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTEAKRLSDIY------GARIYL 290 (610)
T ss_pred CCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCcceeHHHHHHhh------CCEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999987 789999
Q ss_pred eecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCE
Q 016830 149 KREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (382)
Q Consensus 149 K~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAe 228 (382)
|+|++|||||||+|+++++++.+++++++++|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.+||+
T Consensus 291 K~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~ 370 (610)
T PRK13803 291 KREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGAN 370 (610)
T ss_pred EeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCE
Confidence 99999999999999999999999999998888889999999999999999999999999987766677899999999999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhh
Q 016830 229 VRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGS 308 (382)
Q Consensus 229 Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG 308 (382)
|+.++.+..++++++.++.++|.++.++.+|++++..|+|||+.+++.+|.++|.|+.+|+.++.+..||+||+|+|+||
T Consensus 371 Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg 450 (610)
T PRK13803 371 VIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGS 450 (610)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCH
Confidence 99998766788999888888886666667898888899999988888899999999999997777778999999999999
Q ss_pred HHhHhhhhhhcCCCcEEEEEeCCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCCC
Q 016830 309 NAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW 381 (382)
Q Consensus 309 ~~aGi~~~~~~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~~ 381 (382)
|++|++.+|+.++++|||||||.|++...+.|++++..|.+|++||.+++++||++||+.+.||||+|||||+
T Consensus 451 ~~~Gi~~~f~~~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~g 523 (610)
T PRK13803 451 NAIGIFYHFLDDPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPG 523 (610)
T ss_pred hHHHHHHHHhhCCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCC
Confidence 9999999998789999999999999888889999999999999999999999999999999999999999996
No 8
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=2.4e-59 Score=471.24 Aligned_cols=303 Identities=66% Similarity=1.065 Sum_probs=272.7
Q ss_pred CCccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCC
Q 016830 74 GRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDL 153 (382)
Q Consensus 74 ~~~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~l 153 (382)
|+||+|||+|+||+++..|++|++.|.+.+.|++|+++++.++..|++++|||+++++|++.+ ++.+||+|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~-----g~~~iy~K~E~~ 75 (385)
T TIGR00263 1 GYFGDFGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEAL-----GGAKIYLKREDL 75 (385)
T ss_pred CCCCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHh-----CCCeEEEEeCCC
Confidence 689999999999999999999999999999999999999999999999999999999999987 348999999999
Q ss_pred CCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 154 NHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 154 npTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
|||||||+|++++++..+++.+++.+|+++|+||||+|+|++|+++|++|+||||+.+..+.+.|+++|+.+||+|+.++
T Consensus 76 nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~ 155 (385)
T TIGR00263 76 NHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVT 155 (385)
T ss_pred CCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEEC
Confidence 99999999999999999988888777878999999999999999999999999998643334468999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHh
Q 016830 234 SGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGL 313 (382)
Q Consensus 234 ~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi 313 (382)
.+.+.++++++++.+++.++.++.+|+.+|..|++||+.++.+++.|+|.|+.+|+.++.+..||+||+|+|+||+++|+
T Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv 235 (385)
T TIGR00263 156 SGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGI 235 (385)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHH
Confidence 64456888777777766665555678888999999997777789999999999998655444689999999999999999
Q ss_pred hhhhhcCCCcEEEEEeCCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCCC
Q 016830 314 FHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWSW 381 (382)
Q Consensus 314 ~~~~~~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~~ 381 (382)
+.+++.+|++|||||||+++..+...+.+++..|.+++.++..++.++|+++++.+.++|+.||+||.
T Consensus 236 ~~~~~~~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~ 303 (385)
T TIGR00263 236 FYAFIDDPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPG 303 (385)
T ss_pred HHHHhhCCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCC
Confidence 99887679999999999999877778889999999999999999999999999999999999999985
No 9
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-47 Score=370.16 Aligned_cols=218 Identities=27% Similarity=0.344 Sum_probs=190.6
Q ss_pred chhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHH
Q 016830 87 TLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVG 166 (382)
Q Consensus 87 ~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~ 166 (382)
.++.++++|..|+. ++++++ ++|||++++.|++++ +++||+|+|++|++||||+|||+|
T Consensus 4 ~~~~~~~~i~~A~~--------------ri~~~~-~~TPL~~s~~Ls~~~------g~~v~lK~E~lQ~~gSFK~RGA~n 62 (347)
T COG1171 4 LLPVSLADILAAAA--------------RLKGVV-NPTPLQRSPSLSERL------GAEIYLKRENLQPVGSFKIRGAYN 62 (347)
T ss_pred cccccHHHHHHHHH--------------HHhCcc-cCCCcccchhhHHhh------CceEEEeeccCcccccchhhhHHH
Confidence 44567999999988 688888 689999999999997 899999999999999999999999
Q ss_pred HHHHHHHh-CCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHH
Q 016830 167 QALLAKRL-GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSE 245 (382)
Q Consensus 167 ~l~~a~~~-g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~ 245 (382)
.++.+.++ .+.++|+++|+||||+++|++|+++|++++||||.++ +..|++.+|.|||||++++ .+|+|+.+.
T Consensus 63 ~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~t---p~~Kv~a~r~~GaeVil~g---~~~dda~~~ 136 (347)
T COG1171 63 KLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETT---PKIKVDATRGYGAEVILHG---DNFDDAYAA 136 (347)
T ss_pred HHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCC---cHHHHHHHHhcCCEEEEEC---CCHHHHHHH
Confidence 99888644 5777899999999999999999999999999999988 4689999999999999985 468998887
Q ss_pred HHHHHHHccCCceEEecccCCCCCcch-hhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCc
Q 016830 246 AIRDWVTNVETTHYILGSVAGPHPYPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDV 323 (382)
Q Consensus 246 a~~~~~~~~~~~~y~~~s~~n~~p~~~-~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~v 323 (382)
+.+.. +.++..|+ |||++ +|++||+|++.|+.+|+. ..||+||||+||||+++|++.+++ ..|++
T Consensus 137 a~~~a--~~~G~~~i-------~pfD~p~viAGQGTi~lEileq~~----~~~d~v~vpvGGGGLisGia~~~k~~~p~~ 203 (347)
T COG1171 137 AEELA--EEEGLTFV-------PPFDDPDVIAGQGTIALEILEQLP----DLPDAVFVPVGGGGLISGIATALKALSPEI 203 (347)
T ss_pred HHHHH--HHcCCEEe-------CCCCCcceeecccHHHHHHHHhcc----ccCCEEEEecCccHHHHHHHHHHHHhCCCC
Confidence 76643 23445554 99965 899999999999988863 237999999999999999999999 78999
Q ss_pred EEEEEeCCCCCCCCccccccccCCc
Q 016830 324 RLIGVEAAGFGLDSGKHAATLSKGE 348 (382)
Q Consensus 324 rViGVep~g~~~~~~~~~~sl~~G~ 348 (382)
|||||||++++ ++..|+..|+
T Consensus 204 ~vIGVEp~~a~----~~~~Sl~~G~ 224 (347)
T COG1171 204 KVIGVEPEGAP----SMYASLKAGK 224 (347)
T ss_pred eEEEEeeCCCh----HHHHHHHcCC
Confidence 99999999984 6778888873
No 10
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.5e-45 Score=368.90 Aligned_cols=286 Identities=71% Similarity=1.095 Sum_probs=236.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHH
Q 016830 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (382)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~ 169 (382)
+.|++|++.+..-+-|+.|++.++...+++++++|||+++++|++.+ ++.+||+|+|++|||||||+|++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~-----g~~~l~~K~E~~nptgS~K~R~a~~~~~ 75 (365)
T cd06446 1 PALEELEQEFSKERYDPDFPEELRELYKDYVGRPTPLYRAKRLSEYL-----GGAKIYLKREDLNHTGAHKINNALGQAL 75 (365)
T ss_pred ChHHHHHHHHHHhhcCcccHHHHHHHhhccCCCCCCceehHHHHHhh-----CCceEEEEeccCCCccchhHHHHHHHHH
Confidence 35899999999888999999999999999988899999999999877 4689999999999999999999999999
Q ss_pred HHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
.+.+.+.+.+|+++|+||||+|+|++|+++|++|+||||+.++++...|+.+|+.+||+|+.++...+.++++..++.+.
T Consensus 76 ~a~~~g~~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~ 155 (365)
T cd06446 76 LAKRMGKKRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRD 155 (365)
T ss_pred HHHHcCCCeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHH
Confidence 89888887777668999999999999999999999999986543345688899999999999985433466766556555
Q ss_pred HHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhhcCCCcEEEEEe
Q 016830 250 WVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVE 329 (382)
Q Consensus 250 ~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~~~~~vrViGVe 329 (382)
+.++.++..|++++..+++||+.++++++.+++.|+.+|+.+..+..||+||+|+|+||+++|++.+++..+++||||||
T Consensus 156 ~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~~~~~vigVe 235 (365)
T cd06446 156 WVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVE 235 (365)
T ss_pred HHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhCCCceEEEEc
Confidence 44443345677777766788877788999999999999986543346999999999999999999988766799999999
Q ss_pred CCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCC
Q 016830 330 AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWS 380 (382)
Q Consensus 330 p~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~ 380 (382)
|++++.....+..++..|..+.+++...+.+.++.+.+.+.++|+.||.++
T Consensus 236 p~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~ 286 (365)
T cd06446 236 AGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYP 286 (365)
T ss_pred CCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCC
Confidence 999877656666788888888777765555444435566777888888765
No 11
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=4.3e-42 Score=347.71 Aligned_cols=205 Identities=25% Similarity=0.364 Sum_probs=177.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHH
Q 016830 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (382)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~ 169 (382)
.++++|.+|+. ++.+++ .+|||+++++|++.+ |++||+|+|++|||||||+|+|.+.+.
T Consensus 2 ~~~~~i~~a~~--------------~i~~~i-~~TPl~~~~~Ls~~~------g~~iylK~E~lqptGSfK~RgA~n~i~ 60 (403)
T PRK08526 2 LELNKIYQAKQ--------------RISGFV-NKTPFAYAPFLSKIS------GAEVYLKKENLQITGAYKIRGAYNKIA 60 (403)
T ss_pred CCHHHHHHHHH--------------HHhCcC-CCCCccchHHHHHHh------CCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 46899999988 678888 479999999999987 789999999999999999999999998
Q ss_pred HHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
.+.+.++.++|+++|+||||+++|++|+++|++|+||||+.. +..|+++++.|||+|+.++ .+++++...+.+.
T Consensus 61 ~l~~~~~~~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~---p~~k~~~~r~~GA~Vv~~g---~~~~~a~~~a~~~ 134 (403)
T PRK08526 61 NLSEEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEAT---PLLKVSGTKALGAEVILKG---DNYDEAYAFALEY 134 (403)
T ss_pred hccHhhcCCEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHhCCCEEEEEC---CCHHHHHHHHHHH
Confidence 887665566899999999999999999999999999999976 4578899999999999986 3588888777653
Q ss_pred HHHccCCceEEecccCCCCCcch-hhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEE
Q 016830 250 WVTNVETTHYILGSVAGPHPYPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (382)
Q Consensus 250 ~~~~~~~~~y~~~s~~n~~p~~~-~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViG 327 (382)
.++ .+..| .+||++ .+++||+|+|.|+.+|+ +.+|+||+|+|+||+++|++.++| .+|++||||
T Consensus 135 -a~~-~g~~~-------v~p~~~~~~i~G~gtia~EI~eq~-----~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvig 200 (403)
T PRK08526 135 -AKE-NNLTF-------IHPFEDEEVMAGQGTIALEMLDEI-----SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIG 200 (403)
T ss_pred -HHh-cCCEe-------eCCCCCHHHHhhhHHHHHHHHHhc-----CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEE
Confidence 332 33344 367743 67899999999998886 369999999999999999999999 789999999
Q ss_pred EeCCCCCC
Q 016830 328 VEAAGFGL 335 (382)
Q Consensus 328 Vep~g~~~ 335 (382)
|||++++.
T Consensus 201 Vep~~~~~ 208 (403)
T PRK08526 201 VGAKGAPA 208 (403)
T ss_pred EEECCCCh
Confidence 99999863
No 12
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-41 Score=326.37 Aligned_cols=240 Identities=26% Similarity=0.318 Sum_probs=201.0
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhC---CCeEEEecCcchHHHHH
Q 016830 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG---KTRIIAETGAGQHGVAT 192 (382)
Q Consensus 116 l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g---~~~~Vv~aSsGNhG~Al 192 (382)
+.+.+| +|||+++.+++... +++||+|+|.+||+||.|||.|++++..|++.| ++.+|+|+||||+|+++
T Consensus 5 ~~~~iG-~TPlvrL~~~~~~~------~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~L 77 (300)
T COG0031 5 ILDLIG-NTPLVRLNRLSPGT------GVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIAL 77 (300)
T ss_pred hHHHhC-CCCcEeecccCCCC------CceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHH
Confidence 445676 59999999998753 689999999999999999999999999998876 46689999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcch
Q 016830 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM 272 (382)
Q Consensus 193 A~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~ 272 (382)
|++|+.+|+++++|||++. +..|+++|++|||+|+.++........+.+.+.+ +.++..+..++++|+.|+.|+
T Consensus 78 A~vaa~~Gy~~iivmP~~~---S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~e-l~~~~p~~~~~~~Qf~NpaN~-- 151 (300)
T COG0031 78 AMVAAAKGYRLIIVMPETM---SQERRKLLRALGAEVILTPGAPGNMKGAIERAKE-LAAEIPGYAVWLNQFENPANP-- 151 (300)
T ss_pred HHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHH-HHHhCCCceEchhhcCCCccH--
Confidence 9999999999999999954 3457888999999999998743336666665544 344444446777899998886
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCCCccccccccCC-cce
Q 016830 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKG-EVG 350 (382)
Q Consensus 273 ~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~~~~~~~sl~~G-~~g 350 (382)
+.|+ ..+.+||++++++.+|+||+++|+|||++|++.++| .+|++|+++|||+++++++....++..+| +.+
T Consensus 152 ---~aH~---~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~ 225 (300)
T COG0031 152 ---EAHY---ETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAG 225 (300)
T ss_pred ---HHHH---hhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCC
Confidence 5665 444445566667779999999999999999999999 78999999999999998764337888999 999
Q ss_pred eeCCCcceeeecCCcccccccccc
Q 016830 351 VLHGALSYLLQNEDGQIIEPHSIS 374 (382)
Q Consensus 351 ~~~g~~~~~l~d~~~~~~~~~si~ 374 (382)
+++...+..++|+..+|.|..+++
T Consensus 226 ~ip~~~~~~~iD~v~~V~d~~A~~ 249 (300)
T COG0031 226 FVPENLDLDLIDEVIRVSDEEAIA 249 (300)
T ss_pred cCCcccccccCceEEEECHHHHHH
Confidence 999999999999999999988775
No 13
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.3e-41 Score=349.55 Aligned_cols=200 Identities=27% Similarity=0.338 Sum_probs=171.2
Q ss_pred HHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHH
Q 016830 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (382)
Q Consensus 110 ~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG 189 (382)
..+..++.+.+ .+|||+++++|++.+ |++||+|+|++|||||||+|||++++..+.++.+.++|+++|+||||
T Consensus 25 ~~~~~~i~~~v-~~TPL~~~~~Ls~~~------g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~aSaGNha 97 (521)
T PRK12483 25 KILAARVYDVA-RETPLQRAPNLSARL------GNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHA 97 (521)
T ss_pred HHHHHHHhhhc-CCCCeeEchhhhHhh------CCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEECCCHHH
Confidence 46677888888 479999999999987 78999999999999999999999999877654445579999999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCC
Q 016830 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (382)
Q Consensus 190 ~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p 269 (382)
+++|++|+.+|++|+||||+.+ +..|+.+++.|||+|+.++ ++++++.+.+.+.. ++ ++..|+ ||
T Consensus 98 ~gvA~aA~~lGi~~~IvmP~~t---p~~Kv~~~r~~GAeVil~g---~~~d~a~~~A~~la-~e-~g~~~v-------~p 162 (521)
T PRK12483 98 QGVALAAARLGVKAVIVMPRTT---PQLKVDGVRAHGGEVVLHG---ESFPDALAHALKLA-EE-EGLTFV-------PP 162 (521)
T ss_pred HHHHHHHHHhCCCEEEEECCCC---CHHHHHHHHHCCCEEEEEC---CCHHHHHHHHHHHH-Hh-cCCeee-------CC
Confidence 9999999999999999999987 4579999999999999985 46889888776643 22 333443 77
Q ss_pred cch-hhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCC
Q 016830 270 YPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGL 335 (382)
Q Consensus 270 ~~~-~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~ 335 (382)
|++ .+++||+|+|.|+.+|+ +..||+||+|+||||+++|++.++| .+|++|||||||++++.
T Consensus 163 fdd~~viaGqgTig~EI~eQ~----~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~ 226 (521)
T PRK12483 163 FDDPDVIAGQGTVAMEILRQH----PGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNC 226 (521)
T ss_pred CCChHHHHHHHHHHHHHHHHh----CCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCch
Confidence 743 77899999999998886 3359999999999999999999998 78999999999999853
No 14
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=4.2e-41 Score=340.84 Aligned_cols=205 Identities=27% Similarity=0.362 Sum_probs=174.7
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHH
Q 016830 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (382)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l 168 (382)
+.++++|.+|++ ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|+|.+++
T Consensus 3 ~~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~ls~~~------g~~i~~K~E~~nptGS~K~R~a~~~i 61 (404)
T PRK08198 3 MLTLDDIEEARE--------------RLKGVVR-RTPLEYSRTLSELT------GAEVYLKCENLQRTGSFKIRGAYNKI 61 (404)
T ss_pred CCCHHHHHHHHH--------------HHhccCC-CCCceehhhHHHHh------CCEEEEEECCCCCCCCCHHHHHHHHH
Confidence 457899999988 6778885 79999999999987 78999999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 016830 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (382)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~ 248 (382)
..+.++++.++|+++|+||||+++|++|+++|++|+||||+.. +..|+++++.|||+|+.++ .+++++.+.+.+
T Consensus 62 ~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~Vi~~~---~~~~~~~~~a~~ 135 (404)
T PRK08198 62 ASLSEEERARGVVAASAGNHAQGVAYAASLLGIKATIVMPETA---PLSKVKATRSYGAEVVLHG---DVYDEALAKAQE 135 (404)
T ss_pred HhccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEEC---CCHHHHHHHHHH
Confidence 9887666667899999999999999999999999999999976 4578999999999999986 357888776655
Q ss_pred HHHHccCCceEEecccCCCCCcc-hhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEE
Q 016830 249 DWVTNVETTHYILGSVAGPHPYP-MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (382)
Q Consensus 249 ~~~~~~~~~~y~~~s~~n~~p~~-~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrVi 326 (382)
. .++ .+ .|++ +||+ ..++++|.|+|.|+.+|+ +++|+||+|+|+||+++|++.++| .+|++|||
T Consensus 136 ~-~~~-~g-~~~~------~~~~~~~~~~g~~t~a~EI~~q~-----~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kii 201 (404)
T PRK08198 136 L-AEE-TG-ATFV------HPFDDPDVIAGQGTIGLEILEDL-----PDVDTVVVPIGGGGLISGVATAVKALRPEVRVI 201 (404)
T ss_pred H-HHh-cC-CEec------CCCCCccHHHHHHHHHHHHHHhC-----CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEE
Confidence 3 332 23 3443 4443 235689999999998775 369999999999999999999999 78999999
Q ss_pred EEeCCCCC
Q 016830 327 GVEAAGFG 334 (382)
Q Consensus 327 GVep~g~~ 334 (382)
||||++++
T Consensus 202 gVe~~~~~ 209 (404)
T PRK08198 202 GVQAEGAP 209 (404)
T ss_pred EEEeCCCh
Confidence 99999985
No 15
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=4.2e-41 Score=341.17 Aligned_cols=206 Identities=22% Similarity=0.264 Sum_probs=174.5
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHH
Q 016830 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (382)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l 168 (382)
++++++|.+|+. +++++++ +|||+++++|++.+ |.+||+|+|++|||||||+|+|++++
T Consensus 6 ~~~~~~i~~a~~--------------~~~~~i~-~TPl~~~~~ls~~~------g~~v~~K~E~~nptGSfK~Rga~~~i 64 (406)
T PRK06382 6 IPSFDDILYAKS--------------YLEGYLN-RTPLIHSTTFGDEY------GGDIYFKLENFQKTGSFKSRGAVFKF 64 (406)
T ss_pred CCCHHHHHHHHH--------------HHhCcCC-CCCeeEhhhhHHHh------CCEEEEEecCCCCCCCCHHHHHHHHH
Confidence 346899999988 6888995 79999999999887 68999999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 016830 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (382)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~ 248 (382)
..+.+.+..++|+++|+||||+|+|++|+++|++|+||||+.. +..|+++++.|||+|+.++. +++++.+.+.+
T Consensus 65 ~~~~~~~~~~gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~---~~~k~~~~~~~GA~Vv~~~~---~~~~a~~~a~~ 138 (406)
T PRK06382 65 SKLSEDELRNGVITASAGNHAQGVAYAASINGIDAKIVMPEYT---IPQKVNAVEAYGAHVILTGR---DYDEAHRYADK 138 (406)
T ss_pred HhcchhccCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH
Confidence 8877666556799999999999999999999999999999976 35688999999999999863 47777665544
Q ss_pred HHHHccCCceEEecccCCCCCcc-hhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEE
Q 016830 249 DWVTNVETTHYILGSVAGPHPYP-MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (382)
Q Consensus 249 ~~~~~~~~~~y~~~s~~n~~p~~-~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrVi 326 (382)
. .++ .+ .|++ +||+ ..++++|.+++.|+.+|+ + .||+||+|+|+||+++|++.+++ .+|++|||
T Consensus 139 l-a~~-~~-~~~v------~~~~~~~~i~g~~t~~~Ei~eq~----~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vi 204 (406)
T PRK06382 139 I-AMD-EN-RTFI------EAFNDRWVISGQGTIGLEIMEDL----P-DLDQIIVPVGGGGLISGIALAAKHINPNVKII 204 (406)
T ss_pred H-HHh-cC-CEec------CccCChHHHHHHHHHHHHHHHhc----C-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEE
Confidence 3 332 23 3442 5664 356789999999998775 3 69999999999999999999998 78999999
Q ss_pred EEeCCCCCC
Q 016830 327 GVEAAGFGL 335 (382)
Q Consensus 327 GVep~g~~~ 335 (382)
||||++++.
T Consensus 205 gVe~~~~~~ 213 (406)
T PRK06382 205 GIESELSDS 213 (406)
T ss_pred EEEECCChH
Confidence 999999853
No 16
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4e-41 Score=342.61 Aligned_cols=209 Identities=24% Similarity=0.355 Sum_probs=173.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHH
Q 016830 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (382)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~ 169 (382)
.++++|.+|+. ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|+|.+++.
T Consensus 7 ~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~ls~~~------g~~l~~K~E~~~ptGSfK~RgA~~~i~ 65 (420)
T PRK08639 7 VSAKDIDKAAK--------------RLKDVVP-ETPLQRNDYLSEKY------GANVYLKREDLQPVRSYKLRGAYNAIS 65 (420)
T ss_pred CCHHHHHHHHH--------------HHhCcCc-CCCccchHHHHHHh------CCEEEEEecCCCCCCCcHHHHHHHHHH
Confidence 46899999988 6778884 79999999999887 789999999999999999999999998
Q ss_pred HHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
.+.+....++|+++|+||||+++|++|+++|++|+||||+.. +..|++++|.|||+|+.+.....+++++.+.+.+.
T Consensus 66 ~l~~~~~~~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~---~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~ 142 (420)
T PRK08639 66 QLSDEELAAGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTT---PQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEY 142 (420)
T ss_pred hCCHHhhCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---hHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHH
Confidence 764443456899999999999999999999999999999976 45789999999997543322125688888777664
Q ss_pred HHHccCCceEEecccCCCCCcch-hhhhHHHHHHHHHHHHHHHHhCCC--CCEEEEcCChhhHHhHhhhhhh-cCCCcEE
Q 016830 250 WVTNVETTHYILGSVAGPHPYPM-MVRDFHAVIGKETRRQALEKWGGK--PDVLIACVGGGSNAMGLFHEFV-NDKDVRL 325 (382)
Q Consensus 250 ~~~~~~~~~y~~~s~~n~~p~~~-~v~~g~~tig~Ei~~Qi~e~~g~~--pD~vvvpvG~GG~~aGi~~~~~-~~~~vrV 325 (382)
. ++ .+..| .+||++ .++++|+|+|.|+.+|+. .. ||+||+|+|+||+++|++.+++ .+|++||
T Consensus 143 a-~~-~g~~~-------~~~~~~~~~~~G~~tig~EI~eq~~----~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~v 209 (420)
T PRK08639 143 A-EE-TGATF-------IPPFDDPDVIAGQGTVAVEILEQLE----KEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKI 209 (420)
T ss_pred H-Hh-cCCcc-------cCCCCChhHhcchhHHHHHHHHhcc----ccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEE
Confidence 3 32 23333 366743 567999999999988863 23 9999999999999999999998 7899999
Q ss_pred EEEeCCCCCC
Q 016830 326 IGVEAAGFGL 335 (382)
Q Consensus 326 iGVep~g~~~ 335 (382)
|||||++++.
T Consensus 210 igVep~~~~~ 219 (420)
T PRK08639 210 IGVEPAGAAS 219 (420)
T ss_pred EEEEECCCCc
Confidence 9999999863
No 17
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-40 Score=328.48 Aligned_cols=204 Identities=26% Similarity=0.319 Sum_probs=172.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHH
Q 016830 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (382)
Q Consensus 91 ~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~ 170 (382)
++++|..|++ ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++..
T Consensus 2 ~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~i~~ 60 (322)
T PRK07476 2 SLADIYRARR--------------RIAGRVR-RTPLVASASLSARA------GVPVWLKLETLQPTGSFKLRGATNALLS 60 (322)
T ss_pred CHHHHHHHHH--------------HHhCCCC-CCCceechhhHHhh------CCeEEEEEccCCCCCCchHHHHHHHHHh
Confidence 4788888888 6888995 79999999999887 6899999999999999999999999999
Q ss_pred HHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
+.+.+.+++|+++|+||||+|+|++|+++|++|+||||+..+ ..|+.+|+.|||+|+.++. +++++.+.+.+.
T Consensus 61 a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~---~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~~- 133 (322)
T PRK07476 61 LSAQERARGVVTASTGNHGRALAYAARALGIRATICMSRLVP---ANKVDAIRALGAEVRIVGR---SQDDAQAEVERL- 133 (322)
T ss_pred hhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCC---HHHHHHHHHcCCEEEEECC---CHHHHHHHHHHH-
Confidence 988887777999999999999999999999999999999763 5689999999999999974 467776665443
Q ss_pred HHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEe
Q 016830 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVE 329 (382)
Q Consensus 251 ~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVe 329 (382)
.++ .+. +++.++.|+. ++++|.+++.|+.+|+ + ++|+||+|+|+||+++|++.+|+ .+|++||||||
T Consensus 134 ~~~-~g~-~~~~~~~n~~-----~~~g~~t~~~Ei~~Q~----~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe 201 (322)
T PRK07476 134 VRE-EGL-TMVPPFDDPR-----IIAGQGTIGLEILEAL----P-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVS 201 (322)
T ss_pred HHh-cCC-EEeCCCCCcc-----eeechhHHHHHHHHhC----c-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 332 233 4445554433 3478999999988875 3 58999999999999999999999 78999999999
Q ss_pred CCCCC
Q 016830 330 AAGFG 334 (382)
Q Consensus 330 p~g~~ 334 (382)
|++++
T Consensus 202 ~~~~~ 206 (322)
T PRK07476 202 MERGA 206 (322)
T ss_pred ECCch
Confidence 99864
No 18
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=329.86 Aligned_cols=213 Identities=27% Similarity=0.332 Sum_probs=183.6
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHH
Q 016830 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (382)
Q Consensus 115 ~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~ 194 (382)
.+.+.+ .+|||.++-.|++.+ +.++|+|+|++||+||||.||+.+++....++++..+|+++|+||||+|+|+
T Consensus 59 ~i~~~~-~~TPl~~s~~lS~~~------g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 59 KIYPVI-VETPLLKSVALSKKA------GMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIASSAGNHAQAAAY 131 (457)
T ss_pred ccccce-ecccchhhhhhhhhc------CCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEEecCccHHHHHHH
Confidence 455666 479999999999987 8999999999999999999999999988777776778999999999999999
Q ss_pred HHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcch-h
Q 016830 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM-M 273 (382)
Q Consensus 195 aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~-~ 273 (382)
+|+++|++|+||||..+ +..|++++|.+||+|++.. +++++|...+.+...+ ++..|+ +|||. +
T Consensus 132 aa~~LgipaTIVmP~~t---p~~kiq~~~nlGA~Vil~G---~~~deAk~~a~~lAke--~gl~yI-------~pfDhP~ 196 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVAT---PLMKIQRCRNLGATVILSG---EDWDEAKAFAKRLAKE--NGLTYI-------PPFDHPD 196 (457)
T ss_pred HHHhcCCceEEEecCCC---hHHHHHHHhccCCEEEEec---ccHHHHHHHHHHHHHh--cCceec-------CCCCCch
Confidence 99999999999999988 4679999999999999874 5799998888775433 355564 89986 8
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCCCccccccccCCcceee
Q 016830 274 VRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352 (382)
Q Consensus 274 v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~ 352 (382)
||+||+|+|.||.+|+.+ .+++|++||||||+++||+.+++ ..|+++|||||++++. .+..+++.|++..+
T Consensus 197 I~aGqgTig~EIl~ql~~----~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~----~f~~sl~~g~~V~l 268 (457)
T KOG1250|consen 197 IWAGQGTIGLEILEQLKE----PDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAH----SFNASLKAGKPVTL 268 (457)
T ss_pred hhcCcchHHHHHHHhhcC----CCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcH----HHHHHHhcCCeeec
Confidence 999999999999998742 35599999999999999999998 7999999999999984 45678888877766
Q ss_pred CCCcc
Q 016830 353 HGALS 357 (382)
Q Consensus 353 ~g~~~ 357 (382)
+...+
T Consensus 269 p~i~s 273 (457)
T KOG1250|consen 269 PKITS 273 (457)
T ss_pred ccccc
Confidence 65443
No 19
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-41 Score=310.03 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=181.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHH
Q 016830 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (382)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~ 169 (382)
++++|+++|+. ++++++ +.||.+.+++|.+.+ |.+||+|+|++|.|||||.|||+|.++
T Consensus 7 ~t~~dv~~A~~--------------rik~~i-hkTpVlTS~~ln~~~------g~~vfFKcE~fQKtGaFKfRGAlNav~ 65 (323)
T KOG1251|consen 7 ITYEDVRAAHQ--------------RIKPFI-HKTPVLTSENLNEKV------GRHVFFKCENFQKTGAFKFRGALNAVS 65 (323)
T ss_pred CCHHHHHHHHH--------------HHHhhh-ccCceechhhHHHHh------hhheEeehhhhhhccceehhhhHHHHH
Confidence 56799999998 799999 579999999999987 789999999999999999999999999
Q ss_pred HHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
.+..+.+.++|++.||||||+|+|++|+.+|+||+||||.++ +..|+..++.|||+|+.+++.. +.++...++
T Consensus 66 ~l~~ek~~kgvithSSGNHaqAlalaAk~~giPa~IVvP~~A---P~~Kv~a~~~Yga~ii~~e~~~----~sRE~va~~ 138 (323)
T KOG1251|consen 66 SLKAEKRAKGVITHSSGNHAQALALAAKILGIPATIVVPKDA---PICKVAATRGYGANIIFCEPTV----ESRESVAKD 138 (323)
T ss_pred HhhHhhhcCceEeecCCcHHHHHHHHHHhcCCCeEEEecCCC---hHHHHHHHHhcCceEEEecCcc----chHHHHHHH
Confidence 888666666899999999999999999999999999999998 4689999999999999998742 223333343
Q ss_pred HHHccCCceEEecccCCCCCcch-hhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEE
Q 016830 250 WVTNVETTHYILGSVAGPHPYPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (382)
Q Consensus 250 ~~~~~~~~~y~~~s~~n~~p~~~-~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViG 327 (382)
..++ ...|+ .|||+. .++.||+|++.|+++|+ +.+|++|+|+||||+++|++.+.+ ..|+++||+
T Consensus 139 ltee--~g~~~------i~Py~~p~vIaGqgTiA~ElleqV-----g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~ 205 (323)
T KOG1251|consen 139 LTEE--TGYYL------IHPYNHPSVIAGQGTIALELLEQV-----GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYA 205 (323)
T ss_pred HHHh--cCcEE------eCCCCCcceeeccchHHHHHHHhh-----CccceEEEeecCcchhhHHHHHHhccCCCcEEEE
Confidence 3332 34555 488865 67899999999998886 379999999999999999999988 799999999
Q ss_pred EeCCCCCCCCccccccccCCc
Q 016830 328 VEAAGFGLDSGKHAATLSKGE 348 (382)
Q Consensus 328 Vep~g~~~~~~~~~~sl~~G~ 348 (382)
|||+++. +-..++..|+
T Consensus 206 veP~~a~----d~~qsf~~g~ 222 (323)
T KOG1251|consen 206 VEPEAAD----DGQQSFLKGK 222 (323)
T ss_pred ecCcccc----hHHHHHhcCC
Confidence 9999873 3445555554
No 20
>PLN02970 serine racemase
Probab=100.00 E-value=2e-40 Score=327.47 Aligned_cols=207 Identities=18% Similarity=0.209 Sum_probs=171.6
Q ss_pred hhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHH
Q 016830 88 LMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 167 (382)
Q Consensus 88 l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~ 167 (382)
+...+++|++|+. .+.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.++
T Consensus 7 ~~~~~~~i~~a~~--------------~i~~~i~-~TPL~~~~~l~~~~------g~~i~~K~E~~nptGSfKdRga~~~ 65 (328)
T PLN02970 7 YAADLSSIREARK--------------RIAPFIH-RTPVLTSSSLDALA------GRSLFFKCECFQKGGAFKFRGACNA 65 (328)
T ss_pred CCcCHHHHHHHHH--------------HHhCcCC-CCCeeechhhHHhh------CCeEEEEecCCCCCCCcHHHHHHHH
Confidence 3446889999888 5778885 79999999999887 6799999999999999999999999
Q ss_pred HHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHH
Q 016830 168 ALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (382)
Q Consensus 168 l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~ 247 (382)
+..+.+++..++|+++|+||||+|+|++|+++|++|+||||+.. +..|+.+|+.|||+|+.++. +++++.+.+.
T Consensus 66 i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~a~ 139 (328)
T PLN02970 66 IFSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNA---PACKVDAVIRYGGIITWCEP---TVESREAVAA 139 (328)
T ss_pred HHHhhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhcCCEEEEeCC---CHHHHHHHHH
Confidence 98887555556799999999999999999999999999999976 35688899999999999974 3566554443
Q ss_pred HHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEE
Q 016830 248 RDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (382)
Q Consensus 248 ~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrVi 326 (382)
+ +.++ ...|+++++.|+ ..+++|.++|.|+.+|+ + .||+||+|+|+||+++|++.+++ .+|++|||
T Consensus 140 ~-la~~--~g~~~~~~~~n~-----~~~~g~~t~g~Ei~~ql----~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi 206 (328)
T PLN02970 140 R-VQQE--TGAVLIHPYNDG-----RVISGQGTIALEFLEQV----P-ELDVIIVPISGGGLISGIALAAKAIKPSIKII 206 (328)
T ss_pred H-HHHh--cCCEEeCCCCCc-----chhhehHHHHHHHHHhc----c-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEE
Confidence 3 3332 234555555433 23478999999998886 2 59999999999999999999998 78999999
Q ss_pred EEeCCCCC
Q 016830 327 GVEAAGFG 334 (382)
Q Consensus 327 GVep~g~~ 334 (382)
+|||++++
T Consensus 207 ~Vep~~~~ 214 (328)
T PLN02970 207 AAEPKGAD 214 (328)
T ss_pred EEEECCCc
Confidence 99999985
No 21
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.6e-40 Score=327.41 Aligned_cols=239 Identities=23% Similarity=0.302 Sum_probs=184.2
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC---C-eEEEecCcchHHHH
Q 016830 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---T-RIIAETGAGQHGVA 191 (382)
Q Consensus 116 l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~-~~Vv~aSsGNhG~A 191 (382)
+..++| +|||++++.++..+ +.+||+|+|++|||||||+|+|++++..+.+.+. + +.|+++|+||||+|
T Consensus 9 ~~~~ig-~TPLv~l~~l~~~~------~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~a 81 (322)
T PLN02565 9 VTELIG-KTPLVYLNNVVDGC------VARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIG 81 (322)
T ss_pred HHHHhC-CCceEEccccCCCC------CceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHH
Confidence 455676 69999988876533 5799999999999999999999999999887664 1 35899999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcc
Q 016830 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP 271 (382)
Q Consensus 192 lA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~ 271 (382)
+|++|+.+|++|+||||+.. +..|+++|+.|||+|+.++.. .+++++.+.+.+ +.++ +...|+++|+.|+.++
T Consensus 82 lA~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~-~~~~~~~~~a~~-l~~~-~~~~~~~~q~~n~~n~- 154 (322)
T PLN02565 82 LAFMAAAKGYKLIITMPASM---SLERRIILLAFGAELVLTDPA-KGMKGAVQKAEE-ILAK-TPNSYILQQFENPANP- 154 (322)
T ss_pred HHHHHHHcCCeEEEEeCCCC---cHHHHHHHHHcCCEEEEeCCC-CCcHHHHHHHHH-HHHh-CCCcEeecccCCHhHH-
Confidence 99999999999999999976 467999999999999999753 345666655544 3332 2245666666554321
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCCC-ccccccccCC-c
Q 016830 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDS-GKHAATLSKG-E 348 (382)
Q Consensus 272 ~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~~-~~~~~sl~~G-~ 348 (382)
..++.++|.|+.+|+ +..||+||+|+|+||+++|++.+++ .+|++|||||||++++.+. ++..++...| .
T Consensus 155 ---~~~~~t~a~Ei~~q~----~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg 227 (322)
T PLN02565 155 ---KIHYETTGPEIWKGT----GGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIG 227 (322)
T ss_pred ---HHHHHHHHHHHHHhc----CCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCC
Confidence 246788888876654 4469999999999999999999999 7899999999999986542 2223333445 4
Q ss_pred ceeeCCCcceeeecCCccccccccccC
Q 016830 349 VGVLHGALSYLLQNEDGQIIEPHSISA 375 (382)
Q Consensus 349 ~g~~~g~~~~~l~d~~~~~~~~~si~~ 375 (382)
.+..++..++-++|+..+|.|.+++++
T Consensus 228 ~~~~~~~~~~~~vd~~v~V~d~ea~~a 254 (322)
T PLN02565 228 AGFIPGVLDVDLLDEVVQVSSDEAIET 254 (322)
T ss_pred CCCCCCcCCHhHCCEEEEECHHHHHHH
Confidence 445566666667788888888776654
No 22
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.9e-40 Score=335.37 Aligned_cols=240 Identities=20% Similarity=0.267 Sum_probs=187.8
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC---C-eEEEecCcchHHH
Q 016830 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---T-RIIAETGAGQHGV 190 (382)
Q Consensus 115 ~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~-~~Vv~aSsGNhG~ 190 (382)
.+.+++| +|||++++.+++.. +.+||+|+|++|||||||||+|.+++..+++.|. + ..|+++|+||||+
T Consensus 116 ~i~~~iG-~TPLv~l~~l~~~~------g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ 188 (429)
T PLN03013 116 NVSQLIG-KTPMVYLNSIAKGC------VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGI 188 (429)
T ss_pred HHHhcCC-CCCeEECccccccc------CCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHH
Confidence 4667786 69999999998754 6899999999999999999999999999988774 2 4699999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 016830 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (382)
Q Consensus 191 AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~ 270 (382)
|+|++|+.+|++|+||||+.. +..|+++|+.|||+|+.++.. ..++++.+.+.+ +.++ ....|+++|+.|+.+
T Consensus 189 ALA~~a~~~G~~~~VvvP~~~---s~~K~~~ira~GAeVi~v~~~-~~~~~a~~~A~e-la~~-~~g~~~~~qy~Np~n- 261 (429)
T PLN03013 189 GLAFIAASRGYRLILTMPASM---SMERRVLLKAFGAELVLTDPA-KGMTGAVQKAEE-ILKN-TPDAYMLQQFDNPAN- 261 (429)
T ss_pred HHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHcCCEEEEECCC-CChHHHHHHHHH-HHhh-cCCeEeCCCCCCHHH-
Confidence 999999999999999999976 457999999999999999754 345566655544 2332 224566666544332
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCC-CccccccccCC-
Q 016830 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLD-SGKHAATLSKG- 347 (382)
Q Consensus 271 ~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~-~~~~~~sl~~G- 347 (382)
+..++.++|.||.+|+ ++.||+||+|+|+||+++|++.+++ .+|++|||||||++++.+ .++..++...|
T Consensus 262 ---~~ah~~ttg~EI~eq~----~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Gl 334 (429)
T PLN03013 262 ---PKIHYETTGPEIWDDT----KGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGI 334 (429)
T ss_pred ---HHHHHHHHHHHHHHhc----CCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcc
Confidence 2247778888876654 4579999999999999999999999 789999999999998654 23333344455
Q ss_pred cceeeCCCcceeeecCCccccccccccC
Q 016830 348 EVGVLHGALSYLLQNEDGQIIEPHSISA 375 (382)
Q Consensus 348 ~~g~~~g~~~~~l~d~~~~~~~~~si~~ 375 (382)
..+.++.......+|+..+|.|.+++++
T Consensus 335 g~~~ip~~~~~~~vD~vv~VsD~ea~~a 362 (429)
T PLN03013 335 GAGFIPKNLDQKIMDEVIAISSEEAIET 362 (429)
T ss_pred cCCcCCHhHHHHhccEEEEECHHHHHHH
Confidence 4455566666667788888888777654
No 23
>PLN02550 threonine dehydratase
Probab=100.00 E-value=2.6e-40 Score=345.31 Aligned_cols=198 Identities=26% Similarity=0.336 Sum_probs=169.6
Q ss_pred HHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHH
Q 016830 111 ELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGV 190 (382)
Q Consensus 111 ~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~ 190 (382)
.+..++.+.+ .+|||+++++|++.+ |.+||+|+|++|||||||+|+|++++..+.++...++|+++|+||||+
T Consensus 98 il~~~v~~~i-~~TPL~~s~~LS~~~------g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~aSaGNhAq 170 (591)
T PLN02550 98 ILSAKVYDVA-IESPLQLAKKLSERL------GVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQ 170 (591)
T ss_pred HHhhhhhccc-cCChhhhhHHhhHhh------CCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEEECCCHHHH
Confidence 5556778888 479999999999987 789999999999999999999999998876555556799999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 016830 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (382)
Q Consensus 191 AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~ 270 (382)
++|++|+++|++|+||||+.+ +..|+++++.|||+|++++ ++++++.+.+.+. .++ ++..|+ +||
T Consensus 171 gvA~aA~~lGika~IvmP~~t---p~~Kv~~~r~~GAeVvl~g---~~~dea~~~A~~l-a~e-~g~~fi-------~pf 235 (591)
T PLN02550 171 GVALSAQRLGCDAVIAMPVTT---PEIKWQSVERLGATVVLVG---DSYDEAQAYAKQR-ALE-EGRTFI-------PPF 235 (591)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHH-HHh-cCCEEE-------CCC
Confidence 999999999999999999987 3578999999999999996 4588887776553 332 344454 777
Q ss_pred ch-hhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCC
Q 016830 271 PM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFG 334 (382)
Q Consensus 271 ~~-~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~ 334 (382)
++ .+++||+|+|.|+.+|+ +..+|+||+|+||||+++|++.++| .+|++|||||||++++
T Consensus 236 ddp~viaGqgTig~EI~eQl----~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~ 297 (591)
T PLN02550 236 DHPDVIAGQGTVGMEIVRQH----QGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDAN 297 (591)
T ss_pred CChHHHHHHHHHHHHHHHHc----CCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCh
Confidence 43 67899999999998886 3359999999999999999999999 7899999999999874
No 24
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=2.6e-40 Score=335.57 Aligned_cols=197 Identities=27% Similarity=0.423 Sum_probs=163.0
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHH
Q 016830 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (382)
Q Consensus 115 ~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~ 194 (382)
++.+.++ +|||+++++|++.+ |.+||+|+|++|||||||+|+|++++..+.+....++|+++|+||||+++|+
T Consensus 9 ~i~~~i~-~TPl~~~~~ls~~~------g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~gvv~aSsGN~g~a~A~ 81 (409)
T TIGR02079 9 RLKEVVP-HTPLQLNERLSEKY------GANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQGFAY 81 (409)
T ss_pred HHhCcCC-CCCccccHHHHHHh------CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHHHHH
Confidence 6788884 79999999999987 6899999999999999999999999987644444457999999999999999
Q ss_pred HHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc-CCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcch-
Q 016830 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH-SGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM- 272 (382)
Q Consensus 195 aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~-~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~- 272 (382)
+|+++|++|+||||+.. +..|+.+++.|||+|+.+. .+ .+++++.+++.+.. ++ .+..| + +||+.
T Consensus 82 ~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~vv~v~~~g-~~~~~a~~~a~~~~-~~-~g~~~-~------~~~~~~ 148 (409)
T TIGR02079 82 ACRHLGVHGTVFMPATT---PKQKIDRVKIFGGEFIEIILVG-DTFDQCAAAAREHV-ED-HGGTF-I------PPFDDP 148 (409)
T ss_pred HHHHcCCCEEEEECCCC---CHHHHHHHHHcCCCeeEEEEeC-CCHHHHHHHHHHHH-Hh-cCCEE-e------CCCCCH
Confidence 99999999999999976 3578999999999854332 22 46888887776643 32 23334 3 55532
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCC
Q 016830 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGL 335 (382)
Q Consensus 273 ~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~ 335 (382)
.++++|.++|.|+.+|+ +..||+||+|+|+||+++|++.+++ .+|++|||||||++++.
T Consensus 149 ~~~~g~~ti~~Ei~~q~----~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~ 208 (409)
T TIGR02079 149 RIIEGQGTVAAEILDQL----PEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPS 208 (409)
T ss_pred hHhhhhHHHHHHHHHhc----CCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCc
Confidence 56789999999998876 3359999999999999999999999 78999999999999853
No 25
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=5e-40 Score=323.84 Aligned_cols=205 Identities=25% Similarity=0.266 Sum_probs=171.5
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHH
Q 016830 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (382)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l 168 (382)
|.++++|.+|+. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++
T Consensus 2 ~~~~~~i~~a~~--------------~i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~Rga~~~l 60 (322)
T PRK06110 2 MFTLAELEAAAA--------------VVYAAMP-PTPQYRWPLLAERL------GCEVWVKHENHTPTGAFKVRGGLVYF 60 (322)
T ss_pred CCCHHHHHHHHH--------------HHhCcCc-CCCcccchhHHHHh------CCeEEEEeccCCCcCCcHHHHHHHHH
Confidence 456889988887 6788885 79999999999887 68999999999999999999999999
Q ss_pred HHHHHhCC-CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHH
Q 016830 169 LLAKRLGK-TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (382)
Q Consensus 169 ~~a~~~g~-~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~ 247 (382)
..+.+++. ...|+++|+||||+++|++|+++|++|+||||+..+ ..|.++|+.|||+|+.++ .+++++.+.+.
T Consensus 61 ~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~---~~k~~~i~~~GA~V~~~~---~~~~~~~~~a~ 134 (322)
T PRK06110 61 DRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGNS---VEKNAAMRALGAELIEHG---EDFQAAREEAA 134 (322)
T ss_pred HHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCC---HHHHHHHHHcCCEEEEEC---CCHHHHHHHHH
Confidence 88876643 346899999999999999999999999999999763 467899999999999985 35788777665
Q ss_pred HHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEE
Q 016830 248 RDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (382)
Q Consensus 248 ~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrVi 326 (382)
+. .++ .+ .|+++ +|+..++++|.+++.|+.+|+ + .+|+||+|+|+||+++|++.+++ .+|++|||
T Consensus 135 ~~-~~~-~~-~~~~~------~~~~~~~~G~~t~~~Ei~~q~----~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi 200 (322)
T PRK06110 135 RL-AAE-RG-LHMVP------SFHPDLVRGVATYALELFRAV----P-DLDVVYVPIGMGSGICGAIAARDALGLKTRIV 200 (322)
T ss_pred HH-HHh-cC-CEEcC------CCCChHHhccchHHHHHHhhC----C-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEE
Confidence 53 333 23 45543 333344589999999998775 3 68999999999999999999998 78899999
Q ss_pred EEeCCCCC
Q 016830 327 GVEAAGFG 334 (382)
Q Consensus 327 GVep~g~~ 334 (382)
||||++++
T Consensus 201 ~Vep~~~~ 208 (322)
T PRK06110 201 GVVSAHAP 208 (322)
T ss_pred EEeeCCCh
Confidence 99999875
No 26
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=7.5e-40 Score=339.00 Aligned_cols=210 Identities=28% Similarity=0.354 Sum_probs=173.9
Q ss_pred HHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHH
Q 016830 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (382)
Q Consensus 110 ~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG 189 (382)
+.+..++.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|++++..+.+..+.++|+++|+||||
T Consensus 5 ~~~~~~v~~~i-~~TPL~~~~~Ls~~~------g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNha 77 (499)
T TIGR01124 5 AILTARVYEAA-QETPLQKAAKLSERL------GNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHA 77 (499)
T ss_pred HHHHhHhhCcc-CCCCeeehHHHHHHh------CCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEEECCCHHH
Confidence 45666788888 589999999999987 68999999999999999999999999877554445679999999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCC
Q 016830 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (382)
Q Consensus 190 ~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p 269 (382)
+++|++|+++|++|+||||+.+ +..|+++++.+||+|+.++ .+++++...+.+. .++ .+..| .+|
T Consensus 78 ~~vA~aa~~~Gi~~~IvmP~~t---p~~Kv~~~r~~GA~Vvl~g---~~~d~a~~~a~~l-a~~-~g~~~-------i~p 142 (499)
T TIGR01124 78 QGVAFSAARLGLKALIVMPETT---PDIKVDAVRGFGGEVVLHG---ANFDDAKAKAIEL-SQE-KGLTF-------IHP 142 (499)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEeC---cCHHHHHHHHHHH-HHh-cCCEe-------eCC
Confidence 9999999999999999999977 3579999999999999985 4688887766553 332 33344 367
Q ss_pred cc-hhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCCCccccccccCC
Q 016830 270 YP-MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKG 347 (382)
Q Consensus 270 ~~-~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~~~~~~~sl~~G 347 (382)
|+ ..+++||+|+|.|+.+|+ +.++|+||+|+||||+++|++.++| .+|++|||||||++++ ....++..|
T Consensus 143 ~~~~~~i~G~gtig~EI~~q~----~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~----~~~~s~~~g 214 (499)
T TIGR01124 143 FDDPLVIAGQGTLALEILRQV----ANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSD----CMKQALDAG 214 (499)
T ss_pred CCChHHHHhhHHHHHHHHHhC----CCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCCh----HHHHHHhcC
Confidence 74 367799999999998775 3369999999999999999999998 7899999999999885 334445555
Q ss_pred cc
Q 016830 348 EV 349 (382)
Q Consensus 348 ~~ 349 (382)
.+
T Consensus 215 ~~ 216 (499)
T TIGR01124 215 EP 216 (499)
T ss_pred Cc
Confidence 43
No 27
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1.5e-39 Score=321.87 Aligned_cols=204 Identities=24% Similarity=0.299 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHH
Q 016830 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (382)
Q Consensus 91 ~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~ 170 (382)
.+++|.++++ ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..
T Consensus 10 ~~~~i~~a~~--------------~i~~~i~-~TPlv~~~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~i~~ 68 (333)
T PRK08638 10 AIDDIIEAKQ--------------RLAGRIR-KTPLPRSNYLSERC------KGEIFLKLENMQRTGSFKIRGAFNKLSS 68 (333)
T ss_pred CHHHHHHHHH--------------HhhCcCc-CCCceechhhHHhh------CCeEEEEeccCCccCCcHHHHHHHHHHh
Confidence 5788988888 6788885 79999999999876 6799999999999999999999999988
Q ss_pred HHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
+.+..+.++|+++|+||||+++|++|+.+|++|+||||+.. +..|+.+|+.|||+|+.++ ++++++.+.+.+ +
T Consensus 69 ~~~~~~~~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~---~~~k~~~~~~~GA~V~~~~---~~~~~~~~~a~~-~ 141 (333)
T PRK08638 69 LTDAEKRKGVVACSAGNHAQGVALSCALLGIDGKVVMPKGA---PKSKVAATCGYGAEVVLHG---DNFNDTIAKVEE-I 141 (333)
T ss_pred ccHHhcCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCC---cHHHHHHHHHcCCEEEEEC---cCHHHHHHHHHH-H
Confidence 76544445799999999999999999999999999999976 3568999999999999986 356777765544 3
Q ss_pred HHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEe
Q 016830 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVE 329 (382)
Q Consensus 251 ~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVe 329 (382)
.++ .+ .|+++++.|+ ..+++|.+++.|+.+|+ + ++|+||+|+|+||+++|++.+|+ .+|++||||||
T Consensus 142 a~~-~g-~~~~~~~~~~-----~~~~g~~t~a~Ei~~q~----~-~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVe 209 (333)
T PRK08638 142 VEE-EG-RTFIPPYDDP-----KVIAGQGTIGLEILEDL----W-DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQ 209 (333)
T ss_pred HHh-cC-CEEcCcCCCc-----chhccccHHHHHHHhhc----C-CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 333 23 3555554432 23588999999998876 2 58999999999999999999999 68999999999
Q ss_pred CCCCC
Q 016830 330 AAGFG 334 (382)
Q Consensus 330 p~g~~ 334 (382)
|++++
T Consensus 210 p~g~~ 214 (333)
T PRK08638 210 SENVH 214 (333)
T ss_pred ECCCc
Confidence 99874
No 28
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.7e-39 Score=316.73 Aligned_cols=198 Identities=24% Similarity=0.283 Sum_probs=162.5
Q ss_pred hhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC---CeEEEecCcchHHHHHHH
Q 016830 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATAT 194 (382)
Q Consensus 118 ~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhG~AlA~ 194 (382)
++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.+. .++|+++|+||||+++|+
T Consensus 3 ~~vg-~TPL~~~~~l~~~~------g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 75 (299)
T TIGR01136 3 ELIG-NTPLVRLNRLAPGC------DARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAM 75 (299)
T ss_pred cccC-CCceEEccccCCCC------CceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHH
Confidence 4675 69999999999875 6899999999999999999999999999988765 246899999999999999
Q ss_pred HHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhh
Q 016830 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV 274 (382)
Q Consensus 195 aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v 274 (382)
+|+++|++|+||||+.. +..|+++|+.+||+|+.++.. .+++++.+.+.+ +.++ .+.+|+++++.|+. .+
T Consensus 76 ~a~~~G~~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~-~~~~-~~~~~~~~~~~~~~----~~ 145 (299)
T TIGR01136 76 VAAAKGYKLILTMPETM---SLERRKLLRAYGAELILTPAE-EGMKGAIDKAEE-LAAE-TNKYVMLDQFENPA----NP 145 (299)
T ss_pred HHHHcCCcEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHhh-CCCeEecCCCCCch----hH
Confidence 99999999999999975 356899999999999999753 356777766644 3332 23455655544432 12
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCC
Q 016830 275 RDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLD 336 (382)
Q Consensus 275 ~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~ 336 (382)
..++.+++.|+.+|+ +..||+||+|+|+||+++|++.+|+ .++.+|||||||++++..
T Consensus 146 ~~g~~t~~~Ei~~ql----~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~ 204 (299)
T TIGR01136 146 EAHYKTTGPEIWRDT----DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVL 204 (299)
T ss_pred HHHHHHHHHHHHHhc----CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccc
Confidence 367889999887775 3369999999999999999999998 688999999999998543
No 29
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1.3e-39 Score=317.59 Aligned_cols=234 Identities=21% Similarity=0.250 Sum_probs=177.2
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC---CeEEEecCcchHHHH
Q 016830 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVA 191 (382)
Q Consensus 115 ~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhG~A 191 (382)
.+.+.+| +|||+++++|+... +.+||+|+|++|||||||+|++.+++..+.+.|. .++|+++|+||||+|
T Consensus 5 ~i~~~~g-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~a 77 (296)
T PRK11761 5 TLEDTIG-NTPLVKLQRLPPDR------GNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIA 77 (296)
T ss_pred cHHHhcC-CCceEeccccccCC------CCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHH
Confidence 5667786 79999999998765 6899999999999999999999999999988775 246999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcc
Q 016830 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP 271 (382)
Q Consensus 192 lA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~ 271 (382)
+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++.. .+++++.+.+.+ +.++ ...|++.|+.|+.+
T Consensus 78 lA~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~-l~~~--~~~~~~~~~~n~~~-- 148 (296)
T PRK11761 78 LAMIAAIKGYRMKLIMPENM---SQERRAAMRAYGAELILVPKE-QGMEGARDLALQ-MQAE--GEGKVLDQFANPDN-- 148 (296)
T ss_pred HHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHhc--cCCEecCCCCChhh--
Confidence 99999999999999999975 357999999999999999853 456776554433 2332 23455555544322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCCCccccccccCCcce
Q 016830 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (382)
Q Consensus 272 ~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g 350 (382)
+..++.++|.|+.+|+ +..+|+||+|+|+||+++|++.+++ .+|++|||||||+++....+ +......
T Consensus 149 --~~~~~~t~~~Ei~eq~----~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-----~~~~~~~ 217 (296)
T PRK11761 149 --PLAHYETTGPEIWRQT----EGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-----IRRWPEE 217 (296)
T ss_pred --HHHHhhchHHHHHHhc----CCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-----CCCCCCC
Confidence 2244578888887765 3468999999999999999999998 68999999999998743311 1100112
Q ss_pred eeCCCcceeeecCCccccccccccC
Q 016830 351 VLHGALSYLLQNEDGQIIEPHSISA 375 (382)
Q Consensus 351 ~~~g~~~~~l~d~~~~~~~~~si~~ 375 (382)
..+...+....|+...|.|.+++++
T Consensus 218 ~~~~~~~~~~vd~~v~V~d~e~~~a 242 (296)
T PRK11761 218 YLPKIFDASRVDRVLDVSQQEAENT 242 (296)
T ss_pred cCCcccChhhCCEEEEECHHHHHHH
Confidence 2344444445667777777666554
No 30
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.1e-39 Score=336.47 Aligned_cols=199 Identities=26% Similarity=0.343 Sum_probs=169.5
Q ss_pred HHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHH
Q 016830 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (382)
Q Consensus 110 ~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG 189 (382)
+.+..++.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|.+++..+.+....++|+++|+||||
T Consensus 8 ~~~~~~v~~~~-~~TPL~~~~~Ls~~~------g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV~aSaGNha 80 (504)
T PRK09224 8 KILTARVYDVA-QETPLEKAPKLSARL------GNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVITASAGNHA 80 (504)
T ss_pred HHHHHHhcCcC-CCCCceehhHhHHHh------CCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEEEECcCHHH
Confidence 45667888888 579999999999987 78999999999999999999999999877654445689999999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCC
Q 016830 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (382)
Q Consensus 190 ~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p 269 (382)
+++|++|+++|++|+||||+.+ +..|+++++.+||+|+.++ .+++++.+++.+. .++ .+..|+ +|
T Consensus 81 ~avA~aa~~lGi~~~IvmP~~t---p~~K~~~~r~~GA~Vi~~g---~~~~~a~~~a~~l-~~~-~g~~~v-------~~ 145 (504)
T PRK09224 81 QGVALSAARLGIKAVIVMPVTT---PDIKVDAVRAFGGEVVLHG---DSFDEAYAHAIEL-AEE-EGLTFI-------HP 145 (504)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEEC---CCHHHHHHHHHHH-HHh-cCCEEe-------CC
Confidence 9999999999999999999976 3579999999999999986 3688888777553 332 344443 66
Q ss_pred cch-hhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCC
Q 016830 270 YPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFG 334 (382)
Q Consensus 270 ~~~-~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~ 334 (382)
|+. .+++||+|+|.|+.+|+ +..||+||+|+||||+++|++.+++ .+|++|||||||++++
T Consensus 146 f~~~~~i~G~gTi~~EI~~q~----~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~ 208 (504)
T PRK09224 146 FDDPDVIAGQGTIAMEILQQH----PHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSA 208 (504)
T ss_pred CCCcHHHHhHHHHHHHHHHhc----cCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCh
Confidence 643 67799999999998775 3349999999999999999999998 7899999999999885
No 31
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2.4e-39 Score=318.66 Aligned_cols=206 Identities=19% Similarity=0.237 Sum_probs=169.9
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHH
Q 016830 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (382)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l 168 (382)
+++++++.+|++ ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++
T Consensus 5 ~~~~~~i~~a~~--------------~i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~i 63 (321)
T PRK07048 5 LPTYDDVAAAAA--------------RLAGVAH-RTPVLTSRTADART------GAQVFFKCENFQRMGAFKFRGAYNAL 63 (321)
T ss_pred cCCHHHHHHHHH--------------HhhCCCC-CCCCccchhhHHhc------CCeEEEEeccCCCCCCeeHHHHHHHH
Confidence 456889998888 6888995 79999999998876 68999999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 016830 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (382)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~ 248 (382)
..+.+.++..+|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++. .++++.+.+ +
T Consensus 64 ~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~---~~~k~~~~~~~GAeV~~~~~---~~~~~~~~a-~ 136 (321)
T PRK07048 64 SQFSPEQRRAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDA---PAAKVAATRGYGGEVVTYDR---YTEDREEIG-R 136 (321)
T ss_pred HhhhHhhcCCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHH-H
Confidence 8877544445789999999999999999999999999999976 35699999999999999974 355654433 3
Q ss_pred HHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEE
Q 016830 249 DWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (382)
Q Consensus 249 ~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViG 327 (382)
++.++ . ..|++.++.|+ .++++|.+++.|+.+|+ + .||+||+|+|+||+++|++.+++ .+++++|||
T Consensus 137 ~l~~~-~-g~~~~~~~~~~-----~~~~g~~t~~~EI~~q~----~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vig 204 (321)
T PRK07048 137 RLAEE-R-GLTLIPPYDHP-----HVIAGQGTAAKELFEEV----G-PLDALFVCLGGGGLLSGCALAARALSPGCKVYG 204 (321)
T ss_pred HHHHh-c-CCEEECCCCCc-----chhhccchHHHHHHhhc----C-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEE
Confidence 33332 2 34454444332 34578999999988775 3 69999999999999999999998 789999999
Q ss_pred EeCCCCC
Q 016830 328 VEAAGFG 334 (382)
Q Consensus 328 Vep~g~~ 334 (382)
|||++++
T Consensus 205 vep~~~~ 211 (321)
T PRK07048 205 VEPEAGN 211 (321)
T ss_pred EeeCCCh
Confidence 9999874
No 32
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=2.5e-39 Score=319.67 Aligned_cols=241 Identities=23% Similarity=0.275 Sum_probs=176.1
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC---CeEEEecCcchHHHHH
Q 016830 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVAT 192 (382)
Q Consensus 116 l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhG~Al 192 (382)
+..++| +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++..+.+.++ +.+|+++|+||||+|+
T Consensus 7 ~~~~~g-~TPL~~~~~l~~~~------g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~al 79 (330)
T PRK10717 7 VSDTIG-NTPLIRLNRASEAT------GCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGL 79 (330)
T ss_pred HHHHhC-CCceEEccccCCCC------CCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHH
Confidence 455675 79999999999876 6899999999999999999999999999988765 2469999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCC-CC---CHHHHHHHHHHHHHHccCCceEEecccCCCC
Q 016830 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG-TA---TLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (382)
Q Consensus 193 A~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~-~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~ 268 (382)
|++|+++|++|+||||+.. ++.|+++|+.+||+|+.++.. .+ ...+...+..++..++..+..|+++|+.|+.
T Consensus 80 A~~a~~~G~~~~vv~p~~~---~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (330)
T PRK10717 80 ALVAAARGYKTVIVMPETQ---SQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPA 156 (330)
T ss_pred HHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChh
Confidence 9999999999999999976 356999999999999999853 11 1222212222222222223456655443322
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCCCc-------cc
Q 016830 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSG-------KH 340 (382)
Q Consensus 269 p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~~~-------~~ 340 (382)
.+..++.+++.|+.+|+ +..+|+||+|+|+||+++|++.+++ ..+++|||||||++++.+.. ..
T Consensus 157 ----~~~~g~~t~a~Ei~~ql----~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~ 228 (330)
T PRK10717 157 ----NREAHYETTGPEIWEQT----DGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAE 228 (330)
T ss_pred ----hHHHHHHhHHHHHHHhc----CCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCC
Confidence 23467888999887775 4469999999999999999999998 68999999999999865421 01
Q ss_pred cccccCC-cceeeCCCcceeeecCCcccccccccc
Q 016830 341 AATLSKG-EVGVLHGALSYLLQNEDGQIIEPHSIS 374 (382)
Q Consensus 341 ~~sl~~G-~~g~~~g~~~~~l~d~~~~~~~~~si~ 374 (382)
..++..| ..+..+........|+..+|.|.++++
T Consensus 229 ~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~ 263 (330)
T PRK10717 229 GSSITEGIGQGRITANLEGAPIDDAIRIPDEEALS 263 (330)
T ss_pred CCcccCcCCCCcCCcccChhhCCEEEEECHHHHHH
Confidence 2234444 233333333444556666666666554
No 33
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.6e-39 Score=328.47 Aligned_cols=246 Identities=22% Similarity=0.233 Sum_probs=179.2
Q ss_pred HHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhC---CCeEEEecCcchH
Q 016830 112 LSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG---KTRIIAETGAGQH 188 (382)
Q Consensus 112 ~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g---~~~~Vv~aSsGNh 188 (382)
....+.+++| +|||+++++|+..+ +.+||+|+|++|||||||+|+|++++..+.+.| ++.+|+++|||||
T Consensus 43 ~~~~~~~~ig-~TPLv~~~~l~~~~------g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~ 115 (423)
T PLN02356 43 PRNGLIDAIG-NTPLIRINSLSEAT------GCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGST 115 (423)
T ss_pred hhhhHHhhcC-CCceEECccccccc------CCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHH
Confidence 3344667786 69999999998865 789999999999999999999999999988765 3457888999999
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCC----CCCH-HHHHH---HHHHHHHHcc------
Q 016830 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG----TATL-KDATS---EAIRDWVTNV------ 254 (382)
Q Consensus 189 G~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~----~~~~-~da~~---~a~~~~~~~~------ 254 (382)
|+++|++|+.+|++|+||||+.. +..|+++|+.|||+|+.++.. .+.+ ..+.. ++.+...+..
T Consensus 116 g~alA~~aa~~G~~~~ivvP~~~---s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~ 192 (423)
T PLN02356 116 AISLATVAPAYGCKCHVVIPDDV---AIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETD 192 (423)
T ss_pred HHHHHHHHHHcCCcEEEEECCCC---cHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999976 457899999999999999641 1222 11111 1211111100
Q ss_pred ---------------C---------CceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHH
Q 016830 255 ---------------E---------TTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNA 310 (382)
Q Consensus 255 ---------------~---------~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~ 310 (382)
+ ...|+++|+.|+.++. ..++.| |.||.+| +++++|+||+|+|+||++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~---ahg~gT-g~EI~eQ----l~g~~D~vVv~vGtGGti 264 (423)
T PLN02356 193 GIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFR---AHYEGT-GPEIWEQ----TQGNLDAFVAAAGTGGTL 264 (423)
T ss_pred cccccccccccccccccccccccCCCCcEecCccCCcchHH---HHHhhH-HHHHHHh----cCCCCCEEEeCCCchHHH
Confidence 0 2356667777766642 245554 6666554 555799999999999999
Q ss_pred hHhhhhhh-cCCCcEEEEEeCCCCCCCCc-----ccc-------------ccccCC-cceeeCCCcceeeecCCcccccc
Q 016830 311 MGLFHEFV-NDKDVRLIGVEAAGFGLDSG-----KHA-------------ATLSKG-EVGVLHGALSYLLQNEDGQIIEP 370 (382)
Q Consensus 311 aGi~~~~~-~~~~vrViGVep~g~~~~~~-----~~~-------------~sl~~G-~~g~~~g~~~~~l~d~~~~~~~~ 370 (382)
+|++.++| .+|++|||+|||+++..+.. .+. +++..| ..+.++......+.|+...|.|.
T Consensus 265 ~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ 344 (423)
T PLN02356 265 AGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDK 344 (423)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHH
Confidence 99999999 79999999999999875532 111 334444 33444444445567777777776
Q ss_pred ccccC
Q 016830 371 HSISA 375 (382)
Q Consensus 371 ~si~~ 375 (382)
+.+++
T Consensus 345 ea~~a 349 (423)
T PLN02356 345 EAVEM 349 (423)
T ss_pred HHHHH
Confidence 66543
No 34
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=3.2e-39 Score=314.58 Aligned_cols=237 Identities=23% Similarity=0.309 Sum_probs=176.3
Q ss_pred hhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC---CeEEEecCcchHHHHHHH
Q 016830 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATAT 194 (382)
Q Consensus 118 ~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhG~AlA~ 194 (382)
+++| +|||+++++ ...+ +.+||+|+|++|||||||+|++.+++..+.+.+. +.+|+++|+||||+|+|+
T Consensus 3 ~~~g-~TPl~~~~~-~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 74 (298)
T TIGR01139 3 ELIG-NTPLVRLNR-IEGC------NANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAM 74 (298)
T ss_pred cccC-CCceEEccc-cCCC------CceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHH
Confidence 4575 699999998 4444 6899999999999999999999999999988775 246899999999999999
Q ss_pred HHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhh
Q 016830 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV 274 (382)
Q Consensus 195 aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v 274 (382)
+|+++|++|+||||+.. ++.|+++|+.+||+|+.++.. ..++++.+.+.+ +.++....+|+++|+.|+.+ +
T Consensus 75 ~a~~~Gl~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~~~~~n~~~----~ 145 (298)
T TIGR01139 75 VAAARGYKLILTMPETM---SIERRKLLKAYGAELVLTPGA-EGMKGAIAKAEE-IAASTPNSYFMLQQFENPAN----P 145 (298)
T ss_pred HHHHcCCeEEEEeCCcc---CHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHH-HHHhCCCcEEcccccCCccc----H
Confidence 99999999999999975 346899999999999999853 335666665543 34332222446666655432 2
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCCCc-cccccccCC-ccee
Q 016830 275 RDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSG-KHAATLSKG-EVGV 351 (382)
Q Consensus 275 ~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~~~-~~~~sl~~G-~~g~ 351 (382)
..++.+++.|+.+|+ +..||+||+|+|+||+++|++.+|+ ..+++|||||||++++.... +...+...| ..+.
T Consensus 146 ~~g~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~ 221 (298)
T TIGR01139 146 EIHRKTTGPEIWRDT----DGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGF 221 (298)
T ss_pred HHHHHHHHHHHHHHh----CCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCC
Confidence 367888999887775 3369999999999999999999998 67899999999999854322 122222233 2223
Q ss_pred eCCCcceeeecCCccccccccccC
Q 016830 352 LHGALSYLLQNEDGQIIEPHSISA 375 (382)
Q Consensus 352 ~~g~~~~~l~d~~~~~~~~~si~~ 375 (382)
++......+.|+...+.|.+.+++
T Consensus 222 ~~~~~~~~~~d~~~~V~d~e~~~a 245 (298)
T TIGR01139 222 IPKNLNRSVIDEVITVSDEEAIET 245 (298)
T ss_pred CCCccChhhCCEEEEECHHHHHHH
Confidence 343334445566666666655543
No 35
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=2.8e-39 Score=320.50 Aligned_cols=205 Identities=24% Similarity=0.337 Sum_probs=170.4
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHH
Q 016830 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (382)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l 168 (382)
.+++++|.+|+. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++
T Consensus 4 ~~~~~~i~~A~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~v 62 (338)
T PRK06608 4 LQNPQNIAAAHN--------------RIKQYLH-LTPIVHSESLNEML------GHEIFFKVESLQKTGAFKVRGVLNHL 62 (338)
T ss_pred CCCHHHHHHHHH--------------HHhCcCc-CCCccchHhHHHHh------CCEEEEEeCCCCCCCCcHHHHHHHHH
Confidence 345899999988 5778885 79999999999987 78999999999999999999999999
Q ss_pred HHHHHhCC-CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHH
Q 016830 169 LLAKRLGK-TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (382)
Q Consensus 169 ~~a~~~g~-~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~ 247 (382)
..+.+.++ .++|+++|+||||+++|++|+++|++|+||||+.. ++.|+++|+.|||+|+.++. .+++.+.+.
T Consensus 63 ~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~---~~~k~~~l~~~GA~V~~~~~----~~~~~~~a~ 135 (338)
T PRK06608 63 LELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNT---SKVKQQAALYYGGEVILTNT----RQEAEEKAK 135 (338)
T ss_pred HHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC----HHHHHHHHH
Confidence 99998876 25789999999999999999999999999999976 35689999999999999963 245544443
Q ss_pred HHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEE
Q 016830 248 RDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (382)
Q Consensus 248 ~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrVi 326 (382)
+ .+ +...|+++++.|+ ..++++.+++.|+.+|+ +..||+||+|+|+||+++|++.+++ .++.++||
T Consensus 136 ~--~~--~~~~~~~~~~~~~-----~~~~g~~t~a~Ei~~q~----~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vi 202 (338)
T PRK06608 136 E--DE--EQGFYYIHPSDSD-----STIAGAGTLCYEALQQL----GFSPDAIFASCGGGGLISGTYLAKELISPTSLLI 202 (338)
T ss_pred H--HH--hCCCEEcCCCCCH-----HHhccHHHHHHHHHHhc----CCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEE
Confidence 3 22 2235655444332 34578999999887765 4469999999999999999999988 78999999
Q ss_pred EEeCCCCC
Q 016830 327 GVEAAGFG 334 (382)
Q Consensus 327 GVep~g~~ 334 (382)
||||++++
T Consensus 203 gVep~~~~ 210 (338)
T PRK06608 203 GSEPLNAN 210 (338)
T ss_pred EEeeCCCh
Confidence 99999884
No 36
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1.6e-39 Score=325.24 Aligned_cols=240 Identities=20% Similarity=0.273 Sum_probs=181.9
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC----CeEEEecCcchHHH
Q 016830 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGV 190 (382)
Q Consensus 115 ~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~----~~~Vv~aSsGNhG~ 190 (382)
.+...+| +|||+++++++..+ +.+||+|+|++|||||||+|++++++..+.+.|. ..+|+++|+||||+
T Consensus 52 ~v~~~ig-~TPl~~l~~l~~~~------g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~ 124 (368)
T PLN02556 52 DASQLIG-KTPLVYLNKVTEGC------GAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGI 124 (368)
T ss_pred hHHHhcC-CCccEEcccccccc------CCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHH
Confidence 4556676 69999999998765 6899999999999999999999999999988763 24789999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 016830 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (382)
Q Consensus 191 AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~ 270 (382)
++|++|+.+|++|+||||+.. +..|+.+|+.|||+|+.++.. ......++++.+. .++ ....|+++|+.|+.+
T Consensus 125 alA~~a~~~G~~~~ivvp~~~---~~~k~~~lr~~GA~Vi~~~~~-~~~~~~~~~a~~l-~~~-~~~~~~~~q~~np~~- 197 (368)
T PLN02556 125 SLAFMAAMKGYKMILTMPSYT---SLERRVTMRAFGAELVLTDPT-KGMGGTVKKAYEL-LES-TPDAFMLQQFSNPAN- 197 (368)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECCC-CCccHHHHHHHHH-HHh-cCCCCccCCCCCHHH-
Confidence 999999999999999999965 357899999999999999752 2233445444443 222 223455555544332
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCC-CccccccccCC-
Q 016830 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLD-SGKHAATLSKG- 347 (382)
Q Consensus 271 ~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~-~~~~~~sl~~G- 347 (382)
+..++.++|.|+.+|+ ++.+|+||+|+|+||+++|++.+++ .+|++|||||||+++... .+....+...|
T Consensus 198 ---~~~g~~ttg~EI~eq~----~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~ 270 (368)
T PLN02556 198 ---TQVHFETTGPEIWEDT----LGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGN 270 (368)
T ss_pred ---HHHHHHHHHHHHHHhc----CCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeec
Confidence 2247888888887763 3479999999999999999999998 689999999999998543 22222333334
Q ss_pred cceeeCCCcceeeecCCccccccccccC
Q 016830 348 EVGVLHGALSYLLQNEDGQIIEPHSISA 375 (382)
Q Consensus 348 ~~g~~~g~~~~~l~d~~~~~~~~~si~~ 375 (382)
..++.+...+....|+...|+|.+++++
T Consensus 271 g~~~~p~~~~~~~~d~~v~Vsd~ea~~a 298 (368)
T PLN02556 271 GVGFKPDILDMDVMEKVLEVSSEDAVNM 298 (368)
T ss_pred cCCCCccccchhhCCeEEEECHHHHHHH
Confidence 3344455566667777777777777654
No 37
>PLN00011 cysteine synthase
Probab=100.00 E-value=4.2e-39 Score=317.43 Aligned_cols=238 Identities=24% Similarity=0.290 Sum_probs=180.7
Q ss_pred hhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC----CeEEEecCcchHHHHH
Q 016830 117 RDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVAT 192 (382)
Q Consensus 117 ~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~----~~~Vv~aSsGNhG~Al 192 (382)
..++| +|||++++++++.+ +.+||+|+|++|||||||+|++.+++..+.+.|. ..+|+++|+||||+|+
T Consensus 12 ~~~~g-~TPl~~l~~l~~~~------g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~al 84 (323)
T PLN00011 12 TELIG-NTPMVYLNNIVDGC------VARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGL 84 (323)
T ss_pred HHHhC-CCceEEccccCCCC------CceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHH
Confidence 44565 79999999887643 5899999999999999999999999999988873 2578899999999999
Q ss_pred HHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcch
Q 016830 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM 272 (382)
Q Consensus 193 A~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~ 272 (382)
|++|+.+|++|+||||+.. +..|+++|+.+||+|+.++.. ...++.++.+.+ +.++ ....|+++|+.|+.+.
T Consensus 85 A~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~-~~~~~~~~~a~~-l~~~-~~~~~~~~~~~n~~n~-- 156 (323)
T PLN00011 85 ACIGAARGYKVILVMPSTM---SLERRIILRALGAEVHLTDQS-IGLKGMLEKAEE-ILSK-TPGGYIPQQFENPANP-- 156 (323)
T ss_pred HHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECCC-cChHHHHHHHHH-HHHh-CCCeEEeccccCCccH--
Confidence 9999999999999999975 357999999999999999853 233444444433 3332 2236676777665432
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCC-CccccccccCC-cc
Q 016830 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLD-SGKHAATLSKG-EV 349 (382)
Q Consensus 273 ~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~-~~~~~~sl~~G-~~ 349 (382)
..++.++|.|+.+|+ +..||+||+|+|+||+++|++.+++ .+|++|||||||+++... ......++..| ..
T Consensus 157 --~~~~~t~~~EI~~q~----~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~ 230 (323)
T PLN00011 157 --EIHYRTTGPEIWRDS----AGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGS 230 (323)
T ss_pred --HHHHHHHHHHHHHhc----CCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCC
Confidence 135778888887764 3469999999999999999999998 689999999999998543 33334444445 33
Q ss_pred eeeCCCcceeeecCCccccccccccC
Q 016830 350 GVLHGALSYLLQNEDGQIIEPHSISA 375 (382)
Q Consensus 350 g~~~g~~~~~l~d~~~~~~~~~si~~ 375 (382)
+..+.....-+.|+..+|.|.+++++
T Consensus 231 ~~~~~~~~~~~~d~~v~V~d~e~~~a 256 (323)
T PLN00011 231 GIIPFNLDLTIVDEIIQVTGEEAIET 256 (323)
T ss_pred CCCCcccChhhCCeEEEECHHHHHHH
Confidence 33444445555677677777666554
No 38
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=2.1e-39 Score=325.92 Aligned_cols=185 Identities=28% Similarity=0.391 Sum_probs=160.0
Q ss_pred CCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeE
Q 016830 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203 (382)
Q Consensus 124 TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~ 203 (382)
|||+++++|++.+ |.+||+|+|++|||||||+|+|.+++..+.+.++.++|+++|+||||+++|++|+++|++|
T Consensus 1 TPl~~~~~ls~~~------g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~ 74 (380)
T TIGR01127 1 TPLIYSTTLSDIT------GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKA 74 (380)
T ss_pred CCceehHHHHHHh------CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 8999999999987 7899999999999999999999999999988887678999999999999999999999999
Q ss_pred EEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcc-hhhhhHHHHHH
Q 016830 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP-MMVRDFHAVIG 282 (382)
Q Consensus 204 ~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~-~~v~~g~~tig 282 (382)
+||||+.. +..|+++++.|||+|+.++ .+++++.+.+.+. .++ .+ .+++ +||+ ..++++|.++|
T Consensus 75 ~iv~p~~~---~~~k~~~~~~~GA~V~~~~---~~~~~a~~~a~~~-~~~-~~-~~~~------~~~~~~~~~~g~~t~~ 139 (380)
T TIGR01127 75 VIVMPESA---PPSKVKATKSYGAEVILHG---DDYDEAYAFATSL-AEE-EG-RVFV------HPFDDEFVMAGQGTIG 139 (380)
T ss_pred EEEEcCCC---cHHHHHHHHHCCCEEEEEC---CCHHHHHHHHHHH-HHh-cC-CEec------CCCCChhhhhhhHHHH
Confidence 99999976 3579999999999999985 3578887766553 332 23 3443 5553 25668999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCC
Q 016830 283 KETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFG 334 (382)
Q Consensus 283 ~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~ 334 (382)
.|+.+|+ + .||+||+|+|+||+++|++.+++ .+|++|||||||++++
T Consensus 140 ~Ei~~q~----~-~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~ 187 (380)
T TIGR01127 140 LEIMEDI----P-DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAP 187 (380)
T ss_pred HHHHHhC----C-CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCCh
Confidence 9988775 3 69999999999999999999999 7899999999999985
No 39
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=5.3e-39 Score=315.97 Aligned_cols=204 Identities=26% Similarity=0.296 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHH
Q 016830 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (382)
Q Consensus 91 ~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~ 170 (382)
++++|.+|+. ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..
T Consensus 2 ~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~i~~ 60 (317)
T TIGR02991 2 TLQDIERAAA--------------RISGRVE-ETPLVESPSLSELC------GVPVHLKLEHRQTTGSFKLRGATNAVLS 60 (317)
T ss_pred CHHHHHHHHH--------------HHhCcCC-CCCceechhhHHhh------CCeEEEEeccCCCCCCcHHHHHHHHHHh
Confidence 4788888888 6888895 79999999999877 6799999999999999999999999987
Q ss_pred HHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
+.+.....+|+++|+||||+|+|++|+++|++|+||||+.. +..|+.+|+.|||+|+.++. +++++.+.+.+ +
T Consensus 61 ~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~-~ 133 (317)
T TIGR02991 61 LSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATICMSELV---PQNKVDEIRRLGAEVRIVGR---SQDDAQEEVER-L 133 (317)
T ss_pred hhHhccCCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCC---CHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-H
Confidence 66443345789999999999999999999999999999976 35789999999999999974 46776655444 3
Q ss_pred HHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEe
Q 016830 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVE 329 (382)
Q Consensus 251 ~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVe 329 (382)
.++ .+ .|+++++.| ...+++|.+++.|+.+|+ + ++|+||+|+|+||+++|++.+++ .+|++||||||
T Consensus 134 ~~~-~g-~~~~~~~~n-----~~~~~g~~t~a~Ei~~q~----~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigve 201 (317)
T TIGR02991 134 VAD-RG-LTMLPPFDH-----PDIVAGQGTLGLEVVEQM----P-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVS 201 (317)
T ss_pred HHh-cC-CEeeCCCCC-----hHHHhhHHHHHHHHHHhC----C-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 332 23 444433332 234589999999988775 3 58999999999999999999999 68999999999
Q ss_pred CCCCC
Q 016830 330 AAGFG 334 (382)
Q Consensus 330 p~g~~ 334 (382)
|++++
T Consensus 202 p~~~~ 206 (317)
T TIGR02991 202 MERGA 206 (317)
T ss_pred ECCch
Confidence 98764
No 40
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-39 Score=322.24 Aligned_cols=195 Identities=27% Similarity=0.384 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHH
Q 016830 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (382)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~ 169 (382)
+++++|.+|+. +|.+++ ++|||++++.+ +||+|+|++|||||||+|++++++.
T Consensus 21 ~~~~~i~~A~~--------------~i~~~i-~~TPL~~~~~l------------~v~lK~E~~nptGSfK~RgA~~~l~ 73 (349)
T PRK08813 21 VSVADVLAAQA--------------RLRRYL-SPTPLHYAERF------------GVWLKLENLQRTGSYKVRGALNALL 73 (349)
T ss_pred CCHHHHHHHHH--------------HHhCcC-CCCCeEECCCC------------cEEEEecCCCCcCCCHHHHHHHHHH
Confidence 35899999988 688999 57999997542 4999999999999999999999999
Q ss_pred HHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
.+.+.+..+.|+++|+||||+|+|++|+.+|++|+||||+.. +..|+++++.|||+|+.++ .+++++.+.+.+.
T Consensus 74 ~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~---~~~K~~~i~~~GAeVv~~g---~~~~~a~~~a~~l 147 (349)
T PRK08813 74 AGLERGDERPVICASAGNHAQGVAWSAYRLGVQAITVMPHGA---PQTKIAGVAHWGATVRQHG---NSYDEAYAFAREL 147 (349)
T ss_pred HHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEEC---CCHHHHHHHHHHH
Confidence 999888877899999999999999999999999999999976 4579999999999999985 3578887666543
Q ss_pred HHHccCCceEEecccCCCCCcc-hhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhhcCCCcEEEEE
Q 016830 250 WVTNVETTHYILGSVAGPHPYP-MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGV 328 (382)
Q Consensus 250 ~~~~~~~~~y~~~s~~n~~p~~-~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~~~~~vrViGV 328 (382)
.++ . ..|++ +||+ ..+++||.|+|.|+.+| .||+||+|+|+||+++|++.++| .+.+|||||
T Consensus 148 -a~~-~-g~~~v------~~~~np~~i~G~~Tig~EI~e~-------~pD~VvvpvGgGGliaGia~~lk-~~~~rVigV 210 (349)
T PRK08813 148 -ADQ-N-GYRFL------SAFDDPDVIAGQGTVGIELAAH-------APDVVIVPIGGGGLASGVALALK-SQGVRVVGA 210 (349)
T ss_pred -HHh-c-CCEEc------CccCChHHHHHHHHHHHHHHcC-------CCCEEEEEeCccHHHHHHHHHHh-cCCCEEEEE
Confidence 332 2 34443 5553 35679999999998754 48999999999999999999998 357999999
Q ss_pred eCCCCC
Q 016830 329 EAAGFG 334 (382)
Q Consensus 329 ep~g~~ 334 (382)
||++++
T Consensus 211 qpega~ 216 (349)
T PRK08813 211 QVEGVD 216 (349)
T ss_pred EECCCc
Confidence 999985
No 41
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=9.6e-40 Score=330.93 Aligned_cols=207 Identities=25% Similarity=0.300 Sum_probs=170.9
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHH
Q 016830 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (382)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l 168 (382)
+.++++|.+|+. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++
T Consensus 4 ~~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~i 62 (403)
T PRK07334 4 MVTLADIRAAAA--------------RLAGQVL-RTPCVHSRTLSQIT------GAEVWLKFENLQFTASFKERGALNKL 62 (403)
T ss_pred CcCHHHHHHHHH--------------HHhCCCC-CCCccchHHHHHhh------CCeEEEEeccCCCCCCchHHHHHHHH
Confidence 446899999988 6788895 79999999999887 68999999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 016830 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (382)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~ 248 (382)
..+.+....+.|+++|+||||+|+|++|+++|++|+||||+.. +..|+.+|+.|||+|+.++ .+++++.+.+.+
T Consensus 63 ~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~---~~~~~~~~~a~~ 136 (403)
T PRK07334 63 LLLTEEERARGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFT---PTVKVERTRGFGAEVVLHG---ETLDEARAHARE 136 (403)
T ss_pred HhcCHHHhCCcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEEC---cCHHHHHHHHHH
Confidence 8765443344689999999999999999999999999999976 3578899999999999885 357777665544
Q ss_pred HHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEE
Q 016830 249 DWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (382)
Q Consensus 249 ~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViG 327 (382)
+.++ .+ .|++.++.| ...+++|.+++.|+.+|+ + .||+||+|+|+||+++|++.+++ .+|++||||
T Consensus 137 -l~~~-~~-~~~~~~~~~-----~~~~~g~~t~~~Ei~~q~----~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ 203 (403)
T PRK07334 137 -LAEE-EG-LTFVHPYDD-----PAVIAGQGTVALEMLEDA----P-DLDTLVVPIGGGGLISGMATAAKALKPDIEIIG 203 (403)
T ss_pred -HHHh-cC-CEecCCCCC-----HHHHHhHHHHHHHHHhcC----C-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3333 23 444333332 235589999999987764 3 69999999999999999999998 789999999
Q ss_pred EeCCCCCC
Q 016830 328 VEAAGFGL 335 (382)
Q Consensus 328 Vep~g~~~ 335 (382)
|||++++.
T Consensus 204 ve~~~~~~ 211 (403)
T PRK07334 204 VQTELYPS 211 (403)
T ss_pred EEECCCch
Confidence 99999854
No 42
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=5.4e-39 Score=312.28 Aligned_cols=232 Identities=21% Similarity=0.282 Sum_probs=174.8
Q ss_pred hhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC---CeEEEecCcchHHHHHH
Q 016830 117 RDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATA 193 (382)
Q Consensus 117 ~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhG~AlA 193 (382)
.+++| +|||+++++|++.. +.+||+|+|++|||||||+|++.+++..+.+.++ +++|+++|+||||+++|
T Consensus 3 ~~~ig-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA 75 (290)
T TIGR01138 3 EQTVG-NTPLVRLQRMGPEN------GSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALA 75 (290)
T ss_pred HHhCC-CCceEEccccccCC------CCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHH
Confidence 45675 79999999998765 6899999999999999999999999999988776 35799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchh
Q 016830 194 TVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMM 273 (382)
Q Consensus 194 ~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~ 273 (382)
++|+++|++|+||||+.. +..|+++|+.|||+|+.++.. .+++++.+.+ +++.++ .... ++.|+.|+.+.
T Consensus 76 ~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~v~~v~~~-~~~~~~~~~a-~~l~~~-~~~~-~~~~~~~~~~~--- 145 (290)
T TIGR01138 76 MIAALKGYRMKLLMPDNM---SQERKAAMRAYGAELILVTKE-EGMEGARDLA-LELANR-GEGK-LLDQFNNPDNP--- 145 (290)
T ss_pred HHHHHcCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHH-HHHHHh-CCCC-CCCccCCcccH---
Confidence 999999999999999975 356889999999999999853 3567665444 333333 2223 44555554321
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCCCccccccccCCcceee
Q 016830 274 VRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352 (382)
Q Consensus 274 v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~~~~~~~sl~~G~~g~~ 352 (382)
...+.+++.|+.+|+ +..+|+||+|+|+||+++|++.+++ .+|++|||||||++++...+ +.....++.
T Consensus 146 -~~~~~t~~~Ei~~q~----~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-----~~~~~~~~~ 215 (290)
T TIGR01138 146 -YAHYTSTGPEIWQQT----GGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-----IRRWPTEYL 215 (290)
T ss_pred -HHHhHhHHHHHHHHc----CCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-----CCCCCCCcC
Confidence 123478888887664 4469999999999999999999998 78999999999998753211 111122344
Q ss_pred CCCcceeeecCCccccccccccC
Q 016830 353 HGALSYLLQNEDGQIIEPHSISA 375 (382)
Q Consensus 353 ~g~~~~~l~d~~~~~~~~~si~~ 375 (382)
++..+....|+...|.|.+++++
T Consensus 216 ~~~~~~~~~d~~v~V~d~e~~~a 238 (290)
T TIGR01138 216 PGIFDASLVDRVLDIHQRDAENT 238 (290)
T ss_pred CcccChhhCcEEEEECHHHHHHH
Confidence 44444445666666666665543
No 43
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.3e-38 Score=321.28 Aligned_cols=243 Identities=16% Similarity=0.157 Sum_probs=181.6
Q ss_pred CCCccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhh--cCCCCCEEEccccchhhcC--CCCCCCeEEE
Q 016830 73 FGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDY--VGRETPLYFAERLTEHYRR--PNGGGPHIYL 148 (382)
Q Consensus 73 ~~~~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~--ig~~TPL~~~~~Ls~~l~~--~~~~g~~Iyl 148 (382)
|-+||+--...-|-+ ++||.+|+.++..-+.|...+...+... + .+|||+++++|++.+++ ....+.+||+
T Consensus 5 ~~~~~~~~~~~~~~~----~~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~-~~TPLv~~~~ls~~~g~~~~~~~~~~v~~ 79 (404)
T cd06447 5 NPNYGKPAEALAPLS----REDIFDAEARLKRFAPYIAKVFPETAASHGI-IESPLLPIPRMKQALEKLYHQPIKGRLLL 79 (404)
T ss_pred CCCCCchhhccCCCC----HHHHHHHHHHHhhcchhhhhhCccccccCCc-cCCCceehHHHHHHhccccccCcCceEEE
Confidence 456777666666655 9999999996555444433222222222 6 47999999999987610 0001379999
Q ss_pred eecCCCC-CCCcccchHHHHHHH-----HHHhCC--------------------CeEEEecCcchHHHHHHHHHHHcCCe
Q 016830 149 KREDLNH-TGAHKINNAVGQALL-----AKRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQ 202 (382)
Q Consensus 149 K~E~lnp-TGSfK~Rga~~~l~~-----a~~~g~--------------------~~~Vv~aSsGNhG~AlA~aA~~lGi~ 202 (382)
|+|++|| |||||+|++++++.. +++.|. .++|+++||||||+++|++|+.+|++
T Consensus 80 K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~ 159 (404)
T cd06447 80 KADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFK 159 (404)
T ss_pred EecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCC
Confidence 9999999 999999999999864 444443 24899999999999999999999999
Q ss_pred EEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCc-chhhhhHHHHH
Q 016830 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY-PMMVRDFHAVI 281 (382)
Q Consensus 203 ~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~-~~~v~~g~~ti 281 (382)
|+||||++. +..|+++|+.|||+|+.++. +++++.+.+.+. .++ ....|++++ + +..++++|.|+
T Consensus 160 ~~IvvP~~~---~~~K~~~ira~GAeVv~v~~---~~~~a~~~a~~l-a~~-~~~~~~v~~------~n~~~~iaG~~T~ 225 (404)
T cd06447 160 VTVHMSADA---KQWKKDKLRSKGVTVVEYET---DYSKAVEEGRKQ-AAA-DPMCYFVDD------ENSRDLFLGYAVA 225 (404)
T ss_pred EEEEECCCC---cHHHHHHHHHCCCEEEEECC---CHHHHHHHHHHH-HHH-CCCeEeCCC------CCchhHHhhHHHH
Confidence 999999976 46799999999999999973 567776665543 333 223455433 3 22467999999
Q ss_pred HHHHHHHHHHH---hC-CCCCEEEEcCChhhHHhHhhhhhh-c-CCCcEEEEEeCCCCC
Q 016830 282 GKETRRQALEK---WG-GKPDVLIACVGGGSNAMGLFHEFV-N-DKDVRLIGVEAAGFG 334 (382)
Q Consensus 282 g~Ei~~Qi~e~---~g-~~pD~vvvpvG~GG~~aGi~~~~~-~-~~~vrViGVep~g~~ 334 (382)
|.|+.+|+.+. .+ ..||+||+|+|+||+++|++.+|+ . +++++||+|||++++
T Consensus 226 g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap 284 (404)
T cd06447 226 ASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSP 284 (404)
T ss_pred HHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCCh
Confidence 99999997421 11 136689999999999999999998 4 789999999999875
No 44
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.1e-38 Score=309.58 Aligned_cols=232 Identities=26% Similarity=0.314 Sum_probs=174.9
Q ss_pred CCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC---CeEEEecCcchHHHHHHHHHHHc
Q 016830 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATATVCARF 199 (382)
Q Consensus 123 ~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhG~AlA~aA~~l 199 (382)
+|||+++++|++.+ +.+||+|+|++|||||||+|++.+.+..+.+.++ +.+|+++|+||||+|+|++|+++
T Consensus 2 ~TPl~~~~~l~~~~------g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~ 75 (291)
T cd01561 2 NTPLVRLNRLSPGT------GAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAK 75 (291)
T ss_pred CCCEEEccccCCCC------CCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHc
Confidence 69999999999865 6899999999999999999999999999988876 25789999999999999999999
Q ss_pred CCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHH
Q 016830 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (382)
Q Consensus 200 Gi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~-~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~ 278 (382)
|++|+||||+.. +..|+++|+.+||+|+.++... .+++++.+.+.+ +.++ ....|+++++.|+ ..+.+|
T Consensus 76 G~~~~i~vp~~~---~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~-~~~~-~~~~~~~~~~~~p-----~~~~g~ 145 (291)
T cd01561 76 GYRFIIVMPETM---SEEKRKLLRALGAEVILTPEAEADGMKGAIAKARE-LAAE-TPNAFWLNQFENP-----ANPEAH 145 (291)
T ss_pred CCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHH-HHhh-CCCcEEecCCCCc-----hHHHHH
Confidence 999999999975 3579999999999999998642 134676665544 3332 2245554443222 234677
Q ss_pred H-HHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCC-CccccccccCC-cceeeCC
Q 016830 279 A-VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLD-SGKHAATLSKG-EVGVLHG 354 (382)
Q Consensus 279 ~-tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~-~~~~~~sl~~G-~~g~~~g 354 (382)
. +++.|+.+|+ +..||+||+|+|+||+++|++.+|+ ..+.++||||||++++.+ ......+...| ..+.++.
T Consensus 146 ~~t~~~Ei~~ql----~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~ 221 (291)
T cd01561 146 YETTAPEIWEQL----DGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPE 221 (291)
T ss_pred HHHHHHHHHHHc----CCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCC
Confidence 6 9999988776 3369999999999999999999998 689999999999998765 22223344444 2222333
Q ss_pred CcceeeecCCcccccccccc
Q 016830 355 ALSYLLQNEDGQIIEPHSIS 374 (382)
Q Consensus 355 ~~~~~l~d~~~~~~~~~si~ 374 (382)
.......|+...+.|.+.++
T Consensus 222 ~~~~~~~~~~~~V~d~e~~~ 241 (291)
T cd01561 222 NLDRSLIDEVVRVSDEEAFA 241 (291)
T ss_pred ccCchhCceeEEECHHHHHH
Confidence 33333445555555555443
No 45
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=312.44 Aligned_cols=204 Identities=27% Similarity=0.341 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHH
Q 016830 92 LSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLA 171 (382)
Q Consensus 92 l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a 171 (382)
+++|.++++ ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++..+
T Consensus 4 ~~~i~~a~~--------------~~~~~i~-~TPLv~~~~l~~~~------g~~i~~K~E~~nptgS~KdR~a~~~~~~l 62 (317)
T PRK06815 4 FDAILEAHQ--------------RLRPQVR-VTPLEHSPLLSQHT------GCEVYLKCEHLQHTGSFKFRGASNKLRLL 62 (317)
T ss_pred HHHHHHHHH--------------HhhCCCC-CCCccccHhHHHhh------CCeEEEEecCCCCCCCcHHHHHHHHHHhc
Confidence 578888888 6788885 89999999999876 68999999999999999999999999876
Q ss_pred HHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 172 KRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
.+..+.++|+++|+||||+|+|++|+++|++|+||||+.. +..|+.+|+.+||+|+.++. +++++...+.+ +.
T Consensus 63 ~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~-~~ 135 (317)
T PRK06815 63 NEAQRQQGVITASSGNHGQGVALAAKLAGIPVTVYAPEQA---SAIKLDAIRALGAEVRLYGG---DALNAELAARR-AA 135 (317)
T ss_pred chhhcCceEEEECCChHHHHHHHHHHHhCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHHHH-HH
Confidence 5443445689999999999999999999999999999876 35799999999999999974 35666554433 33
Q ss_pred HccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeC
Q 016830 252 TNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEA 330 (382)
Q Consensus 252 ~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep 330 (382)
++ .+..| +.++.++ .+++++.+++.|+.+|+ + .||+||+|+|+||+++|++.+++ .++++|||||||
T Consensus 136 ~~-~~~~~-~~~~~~~-----~~~~g~~t~a~Ei~~q~----~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep 203 (317)
T PRK06815 136 EQ-QGKVY-ISPYNDP-----QVIAGQGTIGMELVEQQ----P-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWP 203 (317)
T ss_pred Hh-cCCEE-ecCCCCh-----hhhcchhHHHHHHHHhc----C-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 32 23344 3333222 34589999999988876 3 59999999999999999999998 788999999999
Q ss_pred CCCCC
Q 016830 331 AGFGL 335 (382)
Q Consensus 331 ~g~~~ 335 (382)
++++.
T Consensus 204 ~~~~~ 208 (317)
T PRK06815 204 ANSPS 208 (317)
T ss_pred CCCCc
Confidence 99863
No 46
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=3.9e-38 Score=319.79 Aligned_cols=205 Identities=42% Similarity=0.563 Sum_probs=162.8
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHH
Q 016830 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (382)
Q Consensus 119 ~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~ 198 (382)
.++++|||+++++|++.++ .+++||+|+|++|||||||+|++++++..+++.|.+++|+++|+||||+|+|++|+.
T Consensus 64 l~g~pTPL~r~~~L~~~lg----~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~~~vtetssGN~G~alA~aaa~ 139 (419)
T TIGR01415 64 QIGRPTPLIRAKGLEELLG----TPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGAL 139 (419)
T ss_pred hcCCCCCeEEccchhhhhC----CCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHH
Confidence 3567999999999999872 137999999999999999999999999999999988777778999999999999999
Q ss_pred cCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCC---------------HHHHHHHHHHHHHHccCCceEEecc
Q 016830 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT---------------LKDATSEAIRDWVTNVETTHYILGS 263 (382)
Q Consensus 199 lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~---------------~~da~~~a~~~~~~~~~~~~y~~~s 263 (382)
+|++|+||||+.+......|+.+|+.|||+|+.++..... +..++.++.+...+ ..+..|+.++
T Consensus 140 ~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~-~~~~~y~~~~ 218 (419)
T TIGR01415 140 FGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALS-DEDTKYSLGS 218 (419)
T ss_pred cCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHh-CCCCEEEeCC
Confidence 9999999999865443457889999999999999853211 11134455554333 2345677666
Q ss_pred cCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh----c-CCCcEEEEEeCCCCCC
Q 016830 264 VAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV----N-DKDVRLIGVEAAGFGL 335 (382)
Q Consensus 264 ~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~----~-~~~vrViGVep~g~~~ 335 (382)
..| .+..+|.++|+|+.+|+. ..+..||+||+|+|+|||++|++.+|+ . .+++|||+|||++++.
T Consensus 219 ~~n------~~~~h~~~ig~Ei~~Ql~-~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~ 288 (419)
T TIGR01415 219 VLN------HVLLHQTVIGLEAKKQME-EAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPT 288 (419)
T ss_pred CCc------HHHHHHHHHHHHHHHHHH-hcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChh
Confidence 543 134688899999999974 334469999999999999999998873 1 3589999999999853
No 47
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=2.8e-38 Score=309.92 Aligned_cols=201 Identities=26% Similarity=0.332 Sum_probs=165.5
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHH
Q 016830 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (382)
Q Consensus 89 ~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l 168 (382)
+++++||.+|++ ++.++++ +|||+++++++.. +.+||+|+|++|||||||+|++++++
T Consensus 4 ~~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~-------~~~i~~K~E~~nptGS~K~R~a~~~~ 61 (310)
T PRK08246 4 MITRSDVRAAAQ--------------RIAPHIR-RTPVLEADGAGFG-------PAPVWLKLEHLQHTGSFKARGAFNRL 61 (310)
T ss_pred CCCHHHHHHHHH--------------HHhCcCC-CCCeeeccccccC-------CCEEEEEECCCCCCCCCHHHHHHHHH
Confidence 456999999999 6888885 7999999998752 58999999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 016830 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (382)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~ 248 (382)
+.+.+ ..++|+++|+||||+++|++|+++|++|+||||+.. ++.|+.+|+.|||+|+.++. +++++.+.+.+
T Consensus 62 ~~~~~--~~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~ 133 (310)
T PRK08246 62 LAAPV--PAAGVVAASGGNAGLAVAYAAAALGVPATVFVPETA---PPAKVARLRALGAEVVVVGA---EYADALEAAQA 133 (310)
T ss_pred Hhhcc--cCCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHCCCEEEEeCC---CHHHHHHHHHH
Confidence 87765 345789999999999999999999999999999875 35689999999999999864 46776665544
Q ss_pred HHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhhcCCCcEEEEE
Q 016830 249 DWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGV 328 (382)
Q Consensus 249 ~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~~~~~vrViGV 328 (382)
. .++ . ..|+++++.|+ .++.++.+++.|+.+|+ +.||+||+|+|+||+++|++.+++. .+|||||
T Consensus 134 ~-~~~-~-g~~~~~~~~n~-----~~i~g~~t~~~Ei~eq~-----~~~D~iv~~vG~GG~~~Gi~~~~~~--~~~vi~v 198 (310)
T PRK08246 134 F-AAE-T-GALLCHAYDQP-----EVLAGAGTLGLEIEEQA-----PGVDTVLVAVGGGGLIAGIAAWFEG--RARVVAV 198 (310)
T ss_pred H-HHh-c-CCEeCCCCCCh-----hhhcchHHHHHHHHHhc-----CCCCEEEEecCccHHHHHHHHHhcC--CCEEEEE
Confidence 3 332 2 34554443322 34578999999998886 3699999999999999999999953 4999999
Q ss_pred eCCCCC
Q 016830 329 EAAGFG 334 (382)
Q Consensus 329 ep~g~~ 334 (382)
||++++
T Consensus 199 e~~~~~ 204 (310)
T PRK08246 199 EPEGAP 204 (310)
T ss_pred eeCCCh
Confidence 999985
No 48
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=4.3e-38 Score=320.94 Aligned_cols=228 Identities=16% Similarity=0.179 Sum_probs=169.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhh-----cCCCCCEEEccccchhhcCC--CCCCCeEEEeecCCCC-CCCccc
Q 016830 90 YALSELESALHKLADDRDFQEELSGILRDY-----VGRETPLYFAERLTEHYRRP--NGGGPHIYLKREDLNH-TGAHKI 161 (382)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~-----ig~~TPL~~~~~Ls~~l~~~--~~~g~~IylK~E~lnp-TGSfK~ 161 (382)
.+++||.+|+.++..-..|... +.... + .+|||++++.|++.++.. ...+.+||+|+|++|| |||||+
T Consensus 41 ~~~~di~~A~~~i~~~~~~~~~---~~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~ 116 (441)
T PRK02991 41 LTEADVQDAEARLKRFAPYLAK---AFPETAATGGI-IESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKA 116 (441)
T ss_pred CCHHHHHHHHHHHHhhhhhhhh---hCccccccCCc-cCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHH
Confidence 4589999999853322111100 11111 5 479999999999876100 0002699999999999 999999
Q ss_pred chHHHHHHHH-----HHhCC--------------------CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHH
Q 016830 162 NNAVGQALLA-----KRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQA 216 (382)
Q Consensus 162 Rga~~~l~~a-----~~~g~--------------------~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~ 216 (382)
|++++++... ++.|. .++|+++|+||||+++|++|+.+|++|+||||++. +.
T Consensus 117 RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a---~~ 193 (441)
T PRK02991 117 RGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADA---RQ 193 (441)
T ss_pred HHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CH
Confidence 9999998753 34442 23799999999999999999999999999999976 46
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHH---h
Q 016830 217 LNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEK---W 293 (382)
Q Consensus 217 ~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~---~ 293 (382)
.|+++|+.|||+|+.++. +++++.+.+.+. .++ +...|+++++. +..+++||.|+|.|+.+|+... .
T Consensus 194 ~K~~~ir~~GAeVi~~~~---~~~~a~~~A~~l-a~~-~~~~~~~~~~~-----~~~~iaG~~Tig~EI~eQl~~~~~~v 263 (441)
T PRK02991 194 WKKDKLRSHGVTVVEYEG---DYGVAVEEGRKA-AES-DPNCYFIDDEN-----SRTLFLGYAVAGLRLKAQLAEQGIVV 263 (441)
T ss_pred HHHHHHHhCCCEEEEECC---CHHHHHHHHHHH-HHh-cCCeEeCCCCC-----chhHHHhHHHHHHHHHHHhhhccCcc
Confidence 799999999999999873 578877666553 332 22345543321 2246799999999999997431 1
Q ss_pred C-CCCCEEEEcCChhhHHhHhhhhhh-c-CCCcEEEEEeCCCCC
Q 016830 294 G-GKPDVLIACVGGGSNAMGLFHEFV-N-DKDVRLIGVEAAGFG 334 (382)
Q Consensus 294 g-~~pD~vvvpvG~GG~~aGi~~~~~-~-~~~vrViGVep~g~~ 334 (382)
+ ..||+||+|+|+||+++|++.+++ . ++++|||+|||++++
T Consensus 264 D~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~ 307 (441)
T PRK02991 264 DADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP 307 (441)
T ss_pred ccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCCh
Confidence 1 247899999999999999999998 3 688999999999974
No 49
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=3.7e-38 Score=309.85 Aligned_cols=192 Identities=21% Similarity=0.322 Sum_probs=156.3
Q ss_pred CCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC--CeEEEecCcchHHHHHHHHHHHcC
Q 016830 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK--TRIIAETGAGQHGVATATVCARFG 200 (382)
Q Consensus 123 ~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~--~~~Vv~aSsGNhG~AlA~aA~~lG 200 (382)
+|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+++. .++|+++|+||||+|+|++|+.+|
T Consensus 1 ~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G 74 (316)
T cd06448 1 KTPLIESTALSKTA------GCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLG 74 (316)
T ss_pred CCCccccchhhHhh------CCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcC
Confidence 49999999999876 6899999999999999999999999999988873 557999999999999999999999
Q ss_pred CeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHH
Q 016830 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAV 280 (382)
Q Consensus 201 i~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~t 280 (382)
++|+||||+.. +..|+++|+.|||+|+.++.. .++++.+.+ +.+.++ ....|++.++.|+ ...++|.+
T Consensus 75 ~~~~iv~p~~~---~~~k~~~l~~~GA~v~~~~~~--~~~~~~~~~-~~l~~~-~~~~~~~~~~~n~-----~~~~g~~t 142 (316)
T cd06448 75 VPCTIVVPEST---KPRVVEKLRDEGATVVVHGKV--WWEADNYLR-EELAEN-DPGPVYVHPFDDP-----LIWEGHSS 142 (316)
T ss_pred CCEEEEECCCC---CHHHHHHHHHcCCEEEEECCc--hHHHHHHHH-HHHHhc-cCCcEEeCCCCCc-----hhhccccH
Confidence 99999999976 457899999999999998742 245444333 333332 2134444444332 34589999
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cC-CCcEEEEEeCCCCC
Q 016830 281 IGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-ND-KDVRLIGVEAAGFG 334 (382)
Q Consensus 281 ig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~-~~vrViGVep~g~~ 334 (382)
++.|+.+|+.+. ..||+||+|+|+||+++|++.+|+ .+ ++++||||||++++
T Consensus 143 ~~~Ei~~q~~~~--~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~ 196 (316)
T cd06448 143 MVDEIAQQLQSQ--EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAH 196 (316)
T ss_pred HHHHHHHHcccc--CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCCh
Confidence 999998887321 259999999999999999999998 55 89999999999985
No 50
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=7.8e-38 Score=304.70 Aligned_cols=203 Identities=26% Similarity=0.340 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHH
Q 016830 92 LSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLA 171 (382)
Q Consensus 92 l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a 171 (382)
+++|.+++. .+.+++| +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+
T Consensus 1 ~~~~~~~~~--------------~i~~~ig-~TPl~~~~~l~~~~------g~~i~~K~E~~nptgS~Kdr~a~~~l~~~ 59 (304)
T cd01562 1 LEDILAAAA--------------RIKPVVR-RTPLLTSPTLSELL------GAEVYLKCENLQKTGSFKIRGAYNKLLSL 59 (304)
T ss_pred ChHHHHHHH--------------HHhCcCC-CCCcccchhhHHHh------CCeEEEEeccCCCcCCcHHHhHHHHHHhc
Confidence 367777777 5788895 79999999999877 68999999999999999999999999988
Q ss_pred HHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 172 KRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
.+.++..+|+++|+||||+|+|++|+++|++|+||||+.. +..|+++|+.+||+|+.++. .++++.+.+.+ +.
T Consensus 60 ~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~l~~~Ga~vi~~~~---~~~~~~~~a~~-la 132 (304)
T cd01562 60 SEEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETA---PAAKVDATRAYGAEVVLYGE---DFDEAEAKARE-LA 132 (304)
T ss_pred CHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-HH
Confidence 8776556799999999999999999999999999999865 35689999999999999975 36777665544 33
Q ss_pred HccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeC
Q 016830 252 TNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEA 330 (382)
Q Consensus 252 ~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep 330 (382)
++ . ..|+++|+.|+.+ +++|.+++.|+.+|+ + .||+||+|+|+||+++|++.+++ ..+.+|||||||
T Consensus 133 ~~-~-~~~~~~~~~n~~~-----~~g~~~~~~Ei~~q~----~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~ 200 (304)
T cd01562 133 EE-E-GLTFIHPFDDPDV-----IAGQGTIGLEILEQV----P-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEP 200 (304)
T ss_pred Hh-c-CCEEeCCCCCcch-----hccHHHHHHHHHHhc----C-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 33 2 3455566655432 378888888887775 3 39999999999999999999998 688999999999
Q ss_pred CCCC
Q 016830 331 AGFG 334 (382)
Q Consensus 331 ~g~~ 334 (382)
.+++
T Consensus 201 ~~~~ 204 (304)
T cd01562 201 EGAP 204 (304)
T ss_pred CCCc
Confidence 9875
No 51
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=3.6e-37 Score=313.20 Aligned_cols=202 Identities=43% Similarity=0.565 Sum_probs=162.3
Q ss_pred CCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCC
Q 016830 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGL 201 (382)
Q Consensus 122 ~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi 201 (382)
++|||+++++|++.++ .+.+||+|+|++|||||||+|+++.++..+++.|.++.++++|+||||+|+|++|+.+|+
T Consensus 76 ~~TPL~~~~~L~~~lg----~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~~~vtetgsGN~G~alA~aaa~~Gl 151 (427)
T PRK12391 76 RPTPLIRARRLEKALG----TPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIKRLTTETGAGQWGSALALACALFGL 151 (427)
T ss_pred CCCCeeEchhhHhhhC----CCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCCEEEEccCchHHHHHHHHHHHHcCC
Confidence 6999999999998872 237999999999999999999999999999999988777778899999999999999999
Q ss_pred eEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCC---------------CHHHHHHHHHHHHHHccCCceEEecccCC
Q 016830 202 QCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTA---------------TLKDATSEAIRDWVTNVETTHYILGSVAG 266 (382)
Q Consensus 202 ~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~---------------~~~da~~~a~~~~~~~~~~~~y~~~s~~n 266 (382)
+|+||||+.+..+.+.|+.+|+.|||+|+.++.... .+..++.++.+.+.. ..+..|++++..
T Consensus 152 ~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~-~~~~~y~~~s~~- 229 (427)
T PRK12391 152 ECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAK-RPDTKYALGSVL- 229 (427)
T ss_pred cEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHh-CCCcEEEcCCCC-
Confidence 999999985544455688999999999999975311 122356666665433 234567654321
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh----cC-CCcEEEEEeCCCCCC
Q 016830 267 PHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV----ND-KDVRLIGVEAAGFGL 335 (382)
Q Consensus 267 ~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~----~~-~~vrViGVep~g~~~ 335 (382)
..+..+|.++|.|+.+|+. ..+..||+||+|+|+|||++|++.+|. .+ +++|||||||++++.
T Consensus 230 -----~~~~~~~~~ig~Ei~~Ql~-~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~ 297 (427)
T PRK12391 230 -----NHVLLHQTVIGLEAKKQLE-LAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPT 297 (427)
T ss_pred -----cHHHhhHHHHHHHHHHHHH-hcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchh
Confidence 1245788999999999974 344579999999999999999998763 24 889999999998853
No 52
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.8e-37 Score=318.13 Aligned_cols=240 Identities=21% Similarity=0.264 Sum_probs=177.5
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC---CeEEEecCcchHHHHH
Q 016830 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVAT 192 (382)
Q Consensus 116 l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhG~Al 192 (382)
+.+++| +|||+++++|++.+ +.+||+|+|++|||||||+|+|.+++..+.+.|+ +++|+++|+||||+|+
T Consensus 5 ~~~~~~-~TPl~~~~~l~~~~------~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~al 77 (454)
T TIGR01137 5 IIDLIG-NTPLVRLNKVSKGI------KCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGL 77 (454)
T ss_pred hHHhcC-CCceEEccccCCCC------CceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHH
Confidence 456775 79999999999865 6899999999999999999999999999988765 2579999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHH--HHHHHHHHHHccCCceEEecccCCCCCc
Q 016830 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDA--TSEAIRDWVTNVETTHYILGSVAGPHPY 270 (382)
Q Consensus 193 A~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da--~~~a~~~~~~~~~~~~y~~~s~~n~~p~ 270 (382)
|++|+++|++|+||||+.. ++.|+.+|+.|||+|+.++.. ..++++ ..+..+++.++.. ..|+++|+.|+.+
T Consensus 78 A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~- 151 (454)
T TIGR01137 78 ALVAAIKGYKCIIVLPEKM---SNEKVDVLKALGAEIVRTPTA-AAFDSPESHIGVAKRLVREIP-GAHILDQYNNPSN- 151 (454)
T ss_pred HHHHHHcCCeEEEEeCCCc---CHHHHHHHHHCCCEEEEcCCc-cCCCchHHHHHHHHHHHHhCC-CcEecccCCChhh-
Confidence 9999999999999999865 356999999999999999752 112221 1122223333322 3455566655432
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCCCccc------ccc
Q 016830 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKH------AAT 343 (382)
Q Consensus 271 ~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~~~~~------~~s 343 (382)
+..++.++|.|+.+|+ +..||+||+|+|+||+++|++.+++ .+|++|||||||+++....... ..+
T Consensus 152 ---~~~~~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~ 224 (454)
T TIGR01137 152 ---PLAHYDGTGPEILEQC----EGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPY 224 (454)
T ss_pred ---HHHHHHhhHHHHHHHh----CCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCc
Confidence 2357888899887775 3369999999999999999999998 7899999999999987554321 122
Q ss_pred ccCC-cceeeCCCcceeeecCCccccccccccC
Q 016830 344 LSKG-EVGVLHGALSYLLQNEDGQIIEPHSISA 375 (382)
Q Consensus 344 l~~G-~~g~~~g~~~~~l~d~~~~~~~~~si~~ 375 (382)
...| ..+.++......+.|+...|.|.+.+++
T Consensus 225 ~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a 257 (454)
T TIGR01137 225 KVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKM 257 (454)
T ss_pred cCCCCCCCCCCCcCCchhCCeEEEECHHHHHHH
Confidence 3333 2223344444455666666666665543
No 53
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=4e-37 Score=302.54 Aligned_cols=198 Identities=26% Similarity=0.334 Sum_probs=162.1
Q ss_pred HHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHH
Q 016830 114 GILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATA 193 (382)
Q Consensus 114 ~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA 193 (382)
+.-.+++| +|||+++++|++.+ +..+||+|+|++|||||||+|++.+++..++++|.+ +|+++|+||||+|+|
T Consensus 7 ~~~~~~~g-~TPL~~~~~l~~~~-----G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~-~lv~aSsGN~g~alA 79 (319)
T PRK06381 7 SSEEKPPG-GTPLLRARKLEEEL-----GLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYS-GITVGTCGNYGASIA 79 (319)
T ss_pred ccccccCC-CCceeEhHhhHHhc-----CCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCCC-EEEEeCCcHHHHHHH
Confidence 33456787 59999999999887 237999999999999999999999999999998875 688899999999999
Q ss_pred HHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchh
Q 016830 194 TVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMM 273 (382)
Q Consensus 194 ~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~ 273 (382)
++|+.+|++|+||||... +..|+++|+.|||+|+.++. +++++.+.+.+. .++ ...|+++++. .+| ..
T Consensus 80 ~~aa~~G~~~~ivvp~~~---~~~~~~~l~~~GA~V~~~~~---~~~~~~~~a~~~-~~~--~~~~~~~~~~-~n~--~~ 147 (319)
T PRK06381 80 YFARLYGLKAVIFIPRSY---SNSRVKEMEKYGAEIIYVDG---KYEEAVERSRKF-AKE--NGIYDANPGS-VNS--VV 147 (319)
T ss_pred HHHHHcCCcEEEEECCCC---CHHHHHHHHHcCCEEEEcCC---CHHHHHHHHHHH-HHH--cCcEecCCCC-CCc--ch
Confidence 999999999999999865 35788999999999999974 367776666553 332 2355543322 011 12
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-c------CCCcEEEEEeCCCCC
Q 016830 274 VRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N------DKDVRLIGVEAAGFG 334 (382)
Q Consensus 274 v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~------~~~vrViGVep~g~~ 334 (382)
.++|+.+++.|+.+|+ +..||+||+|+|+||+++|++.+|+ . ++.+|||||||.+++
T Consensus 148 ~~~G~~t~a~Ei~~ql----~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~ 211 (319)
T PRK06381 148 DIEAYSAIAYEIYEAL----GDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGN 211 (319)
T ss_pred HhhhHHHHHHHHHHHh----CCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCC
Confidence 4589999999998886 3469999999999999999999998 4 789999999999873
No 54
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=5.5e-37 Score=311.82 Aligned_cols=234 Identities=17% Similarity=0.145 Sum_probs=175.3
Q ss_pred chhhhHHHHHHHHHHhcCChhHHHHHHHHHh--hhcCCCCCEEEccccchhhcC--CCCCCCeEEEeecCCCC-CCCccc
Q 016830 87 TLMYALSELESALHKLADDRDFQEELSGILR--DYVGRETPLYFAERLTEHYRR--PNGGGPHIYLKREDLNH-TGAHKI 161 (382)
Q Consensus 87 ~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~--~~ig~~TPL~~~~~Ls~~l~~--~~~~g~~IylK~E~lnp-TGSfK~ 161 (382)
.+..+++||.+|..++..-..|.+++..-+. ..+ .+|||++++++++.++. ....+.+||+|+|++|| |||||+
T Consensus 33 ~~~~~~~~i~~a~~~~~~~~~~~~~~fp~~~~~~~~-~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKd 111 (431)
T TIGR02035 33 KVGLKAQEVAEAEARLQRFAPYIAKVFPETAATGGI-IESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKA 111 (431)
T ss_pred cCCCCHHHHHHHHHHHHhhhhhHHHhCccccccCCc-cCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHH
Confidence 3346799999999876543222222111111 134 47999999999985410 00014799999999999 999999
Q ss_pred chHHHHHHH-----HHHhCC--------------------CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHH
Q 016830 162 NNAVGQALL-----AKRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQA 216 (382)
Q Consensus 162 Rga~~~l~~-----a~~~g~--------------------~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~ 216 (382)
|++++++.. +.+.|. +++|+++|+||||+++|++|+.+|++|+||||++. +.
T Consensus 112 RGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a---~~ 188 (431)
T TIGR02035 112 RGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADA---KQ 188 (431)
T ss_pred HHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---CH
Confidence 999998864 444443 35899999999999999999999999999999976 46
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHH---h
Q 016830 217 LNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEK---W 293 (382)
Q Consensus 217 ~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~---~ 293 (382)
.|+++||.|||+|+.++. +++++.+.+.+. .++ ....|++++ .|+ ..+++||.|+|.|+.+|+... .
T Consensus 189 ~K~~~ir~~GAeVv~~~~---~~~~a~~~A~~l-a~~-~~~~~~~d~-~n~----~n~~aG~~T~g~EI~eQl~~~~~~~ 258 (431)
T TIGR02035 189 WKKDKLRSKGVTVVEYES---DYGVAVEEGRKN-ADA-DPMCYFVDD-ENS----RNLFLGYAVAASRLKKQFDKKGIVV 258 (431)
T ss_pred HHHHHHHHcCCEEEEECC---CHHHHHHHHHHH-HHh-cCCeEECCC-CCc----ccHHhhHHHHHHHHHHhhhcccccc
Confidence 899999999999999974 578887776553 332 223455443 111 234599999999999997432 1
Q ss_pred C-CCCCEEEEcCChhhHHhHhhhhhh-c-CCCcEEEEEeCCCCC
Q 016830 294 G-GKPDVLIACVGGGSNAMGLFHEFV-N-DKDVRLIGVEAAGFG 334 (382)
Q Consensus 294 g-~~pD~vvvpvG~GG~~aGi~~~~~-~-~~~vrViGVep~g~~ 334 (382)
+ ..||+|++|+|+||+++|++.++| . ++++|||+|||++++
T Consensus 259 d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~ 302 (431)
T TIGR02035 259 DKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSP 302 (431)
T ss_pred ccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCH
Confidence 1 257899999999999999999998 4 889999999999985
No 55
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.8e-36 Score=306.59 Aligned_cols=213 Identities=21% Similarity=0.206 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHH--hhhcCCCCCEEEccccchhhcCCCCCC-CeEEEeecCCC-CCCCcccchHH
Q 016830 90 YALSELESALHKLADDRDFQEELSGIL--RDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLN-HTGAHKINNAV 165 (382)
Q Consensus 90 ~~l~~l~~a~~~~~~~~~f~~~~~~~l--~~~ig~~TPL~~~~~Ls~~l~~~~~~g-~~IylK~E~ln-pTGSfK~Rga~ 165 (382)
.+++++++|.. ++ .+.+ .+|||+++++|++.+ | .+||+|+|++| ||||||+||+.
T Consensus 24 ~~~~~~~~a~~--------------~~~~~~~~-~~TPL~~~~~l~~~~------G~~~v~~K~E~~q~ptgSFK~RG~~ 82 (399)
T PRK08206 24 LSQEEAKKARA--------------FHQSFPGY-APTPLVALPDLAAEL------GVGSILVKDESYRFGLNAFKALGGA 82 (399)
T ss_pred CCHHHHHHHHH--------------HHhcCCCC-CCCCCcchHHHHHHh------CCCcEEEecccCcCCCCChHHhhHH
Confidence 45788888887 45 3455 489999999999987 5 69999999985 99999999998
Q ss_pred HHHHHHHH--hCCC--------------------eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHH
Q 016830 166 GQALLAKR--LGKT--------------------RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR 223 (382)
Q Consensus 166 ~~l~~a~~--~g~~--------------------~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~ 223 (382)
+.+..+.. .+.+ .+|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+.+|+
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~---~~~k~~~i~ 159 (399)
T PRK08206 83 YAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGS---SEERVDAIR 159 (399)
T ss_pred HHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHH
Confidence 88876642 2321 2589999999999999999999999999999976 356888999
Q ss_pred HcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCc---chhhhhHHHHHHHHHHHHHHHHhCCCCCEE
Q 016830 224 LLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY---PMMVRDFHAVIGKETRRQALEKWGGKPDVL 300 (382)
Q Consensus 224 ~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~---~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~v 300 (382)
.|||+|+.++. +++++...+.+.. ++ . ..|++.+ ..++|| +..+++|+.|++.|+.+|+.+. +..||+|
T Consensus 160 ~~GA~Vi~v~~---~~~~~~~~a~~~~-~~-~-g~~~v~~-~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~-~~~pD~v 231 (399)
T PRK08206 160 ALGAECIITDG---NYDDSVRLAAQEA-QE-N-GWVVVQD-TAWEGYEEIPTWIMQGYGTMADEAVEQLKEM-GVPPTHV 231 (399)
T ss_pred HcCCEEEEeCC---CHHHHHHHHHHHH-HH-c-CCEEecC-ccccCcccccHHHHHHhHHHHHHHHHHHHhc-CCCCCEE
Confidence 99999999974 4777776665532 22 2 3444321 112233 2456799999999999997422 2369999
Q ss_pred EEcCChhhHHhHhhhhhh-c--CCCcEEEEEeCCCCC
Q 016830 301 IACVGGGSNAMGLFHEFV-N--DKDVRLIGVEAAGFG 334 (382)
Q Consensus 301 vvpvG~GG~~aGi~~~~~-~--~~~vrViGVep~g~~ 334 (382)
|+|+|+||+++|++.+++ . .+.+|||+|||++++
T Consensus 232 vvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~ 268 (399)
T PRK08206 232 FLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQAD 268 (399)
T ss_pred EEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCc
Confidence 999999999999999997 3 358999999999985
No 56
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.4e-36 Score=302.73 Aligned_cols=189 Identities=23% Similarity=0.292 Sum_probs=155.8
Q ss_pred cCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHc
Q 016830 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARF 199 (382)
Q Consensus 120 ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~l 199 (382)
+| +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+++.+ +|+++|+||||+|+|++|+.+
T Consensus 26 ~G-~TPL~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~-~vV~aSsGN~G~AlA~~aa~~ 97 (351)
T PRK06352 26 EG-NTPLIPLPNLSKEL------GVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAE-AVICASTGNTSAAAAAYATRA 97 (351)
T ss_pred CC-CCCeeEcHhhHHHh------CCeEEEEecCCCCccChHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHHHc
Confidence 45 79999999999877 67999999999999999999999999999988875 789999999999999999999
Q ss_pred CCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHH
Q 016830 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHA 279 (382)
Q Consensus 200 Gi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~ 279 (382)
|++|+||||+... +..|+.+|+.|||+|+.++. +++++.+.+.+ ..++ ...|..+ +++...+++|.
T Consensus 98 G~~~~ivvp~~~~--~~~k~~~~~a~GA~V~~~~~---~~~~~~~~a~~-~~~~--~~~~~~~------~~n~~~~~G~~ 163 (351)
T PRK06352 98 GLKAYIVIPEGKV--ALGKLAQAVMYGADIISIQG---NFDEALKSVRE-LAET--EAVTLVN------SVNPYRLEGQK 163 (351)
T ss_pred CCcEEEEEeCCCC--cHHHHHHHHhcCCEEEEECC---CHHHHHHHHHH-HHHh--cCccccc------CCCccceeeHH
Confidence 9999999998631 35688899999999999974 46776665544 2332 2233322 22223458999
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCC-----cEEEEEeCCCCC
Q 016830 280 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKD-----VRLIGVEAAGFG 334 (382)
Q Consensus 280 tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~-----vrViGVep~g~~ 334 (382)
+++.|+.+|+ +..||+||+|+|+||+++|++.+|+ .+++ +|||||||++++
T Consensus 164 t~~~EI~~Q~----~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~ 220 (351)
T PRK06352 164 TAAFEICEQL----GSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAA 220 (351)
T ss_pred HHHHHHHHHc----CCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCC
Confidence 9999998876 4479999999999999999999998 4555 899999999875
No 57
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.4e-35 Score=299.82 Aligned_cols=189 Identities=29% Similarity=0.385 Sum_probs=157.0
Q ss_pred CCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCe
Q 016830 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQ 202 (382)
Q Consensus 123 ~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~ 202 (382)
+|||+++++|++.+ +..+||+|+|++|||||||||++.+++..+.+.|.+ +|+++|+||||+|+|++|+++|++
T Consensus 79 ~TPL~~~~~l~~~~-----G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~-~vv~aSsGN~g~alA~~aa~~G~~ 152 (394)
T PRK08197 79 MTPLLPLPRLGKAL-----GIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVK-HLAMPTNGNAGAAWAAYAARAGIR 152 (394)
T ss_pred CCCceEhHHHHHHh-----CCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHHHHcCCc
Confidence 69999999999887 236999999999999999999999999999988876 688999999999999999999999
Q ss_pred EEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHH
Q 016830 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (382)
Q Consensus 203 ~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig 282 (382)
|+||||++. +..|+.+|+.+||+|+.++. +++++.+.+.+. .++ ...|..+++.| || .++||.|++
T Consensus 153 ~~v~vp~~~---~~~k~~~~~~~GA~Vi~v~~---~~~~~~~~a~~~-~~~--~g~~~~~~~~n--p~---~ieG~~t~a 218 (394)
T PRK08197 153 ATIFMPADA---PEITRLECALAGAELYLVDG---LISDAGKIVAEA-VAE--YGWFDVSTLKE--PY---RIEGKKTMG 218 (394)
T ss_pred EEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHH-HHh--cCcccccCCCC--cc---chhcHHHHH
Confidence 999999976 35689999999999999974 467766555443 332 23565555433 33 348999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-c-------CCCcEEEEEeCCCCC
Q 016830 283 KETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N-------DKDVRLIGVEAAGFG 334 (382)
Q Consensus 283 ~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~-------~~~vrViGVep~g~~ 334 (382)
.|+.+|+.. ..||+||+|+|+||+++|++.+|+ . ++.+|||+|||+++.
T Consensus 219 ~Ei~eQl~~---~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~ 275 (394)
T PRK08197 219 LELAEQLGW---RLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCA 275 (394)
T ss_pred HHHHHHcCC---CCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCC
Confidence 999888621 249999999999999999999997 3 488999999999984
No 58
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=2e-35 Score=300.86 Aligned_cols=190 Identities=26% Similarity=0.296 Sum_probs=157.3
Q ss_pred CCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCe
Q 016830 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQ 202 (382)
Q Consensus 123 ~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~ 202 (382)
+|||+++++|++.+ +..+||+|+|++|||||||||++.+++..|.+.|.+ .|+++|+||||+|+|++|+++|++
T Consensus 89 ~TPLv~~~~l~~~l-----G~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~-~vv~aSsGN~g~alA~~aa~~Gl~ 162 (421)
T PRK07591 89 FTPLVKADRLAREL-----GLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFT-TVACASTGNLANSVAAHAARAGLD 162 (421)
T ss_pred CCcceEhHHHHHHh-----CCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCC-EEEEeCCCHHHHHHHHHHHHcCCC
Confidence 69999999999987 236999999999999999999999999999988876 678899999999999999999999
Q ss_pred EEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHH
Q 016830 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (382)
Q Consensus 203 ~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig 282 (382)
|+||||+.. +..|+.+|+.|||+|+.++. +++++.+.+.+ ..++.+ ..|+.++ +.+||. ++|+.+++
T Consensus 163 ~~I~vP~~~---~~~k~~~~~~~GA~Vi~v~g---~~d~a~~~a~~-~~~~~~-~~~~~n~--~~~p~~---ieG~~Tia 229 (421)
T PRK07591 163 SCVFIPADL---EAGKIVGTLVYGPTLVAVDG---NYDDVNRLCSE-LANEHE-GWGFVNI--NLRPYY---AEGSKTLG 229 (421)
T ss_pred EEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHhcC-CEEEecC--CCCccc---ccchHHHH
Confidence 999999975 35799999999999999974 46776655443 333321 3455443 345553 48999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-c-------CCCcEEEEEeCCCCC
Q 016830 283 KETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N-------DKDVRLIGVEAAGFG 334 (382)
Q Consensus 283 ~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~-------~~~vrViGVep~g~~ 334 (382)
.|+.+|+.. ..||+||+|+|+||+++|++.+|+ . ++.+|||+|||+++.
T Consensus 230 ~Ei~eQl~~---~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~ 286 (421)
T PRK07591 230 YEVAEQLGW---RLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCS 286 (421)
T ss_pred HHHHHHcCC---CCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCC
Confidence 999888621 249999999999999999999997 3 578999999999863
No 59
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=2e-35 Score=290.84 Aligned_cols=189 Identities=29% Similarity=0.383 Sum_probs=155.7
Q ss_pred CCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCC
Q 016830 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGL 201 (382)
Q Consensus 122 ~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi 201 (382)
.+|||+++++|++.+ ++.+||+|+|++|||||||+|++.+++..+.+.+.+ +|+++|+||||+|+|++|+.+|+
T Consensus 21 g~TPl~~~~~l~~~~-----g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~-~vv~~SsGN~g~alA~~a~~~G~ 94 (324)
T cd01563 21 GNTPLVRAPRLGERL-----GGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGVK-AVACASTGNTSASLAAYAARAGI 94 (324)
T ss_pred CCCceeechhhHhhc-----CCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCCC-EEEEeCCCHHHHHHHHHHHHcCC
Confidence 479999999999876 348999999999999999999999999999988855 78899999999999999999999
Q ss_pred eEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHH
Q 016830 202 QCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVI 281 (382)
Q Consensus 202 ~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~ti 281 (382)
+|+||||+.. +..|+++|+.+||+|+.++. +++++.+.+.+ +.++ . .|++.++.|+. .+.+|.++
T Consensus 95 ~~~ivvp~~~---~~~k~~~l~~~GA~Vi~~~~---~~~~~~~~a~~-~~~~--~-~~~~~~~~n~~-----~~~g~~t~ 159 (324)
T cd01563 95 KCVVFLPAGK---ALGKLAQALAYGATVLAVEG---NFDDALRLVRE-LAEE--N-WIYLSNSLNPY-----RLEGQKTI 159 (324)
T ss_pred ceEEEEeCCC---CHHHHHHHHHcCCEEEEECC---cHHHHHHHHHH-HHHh--c-CeeccCCCCcc-----eecchhhh
Confidence 9999999976 35789999999999999974 46776654433 3332 2 34444444433 34789999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-c------CCCcEEEEEeCCCCC
Q 016830 282 GKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N------DKDVRLIGVEAAGFG 334 (382)
Q Consensus 282 g~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~------~~~vrViGVep~g~~ 334 (382)
+.|+.+|+. +..||+||+|+|+||+++|++.+++ . ++.++||||||.+++
T Consensus 160 ~~Ei~~q~~---~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~ 216 (324)
T cd01563 160 AFEIAEQLG---WEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAA 216 (324)
T ss_pred HHHHHHHcC---CCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCC
Confidence 999988862 1259999999999999999999987 3 268999999999874
No 60
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=7e-35 Score=292.63 Aligned_cols=211 Identities=21% Similarity=0.194 Sum_probs=163.8
Q ss_pred HHHHHhhhcCCCCCEEEccccchhhcCCCCCC-CeEEEeecCCCC-CCCcccchHHHHHHHHHHhC--------------
Q 016830 112 LSGILRDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLNH-TGAHKINNAVGQALLAKRLG-------------- 175 (382)
Q Consensus 112 ~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g-~~IylK~E~lnp-TGSfK~Rga~~~l~~a~~~g-------------- 175 (382)
+++++..| ++|||+++++|++.+ | .+||+|+|++|+ |||||+||+.+.+..+.++.
T Consensus 13 ~~~~~~~~--~~TPL~~~~~l~~~~------g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~ 84 (376)
T TIGR01747 13 FHKKIPGY--RPTPLCALDHLANLL------GLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLK 84 (376)
T ss_pred HHHhCCCC--CCCCCcchHHHHHHh------CCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHh
Confidence 34478777 479999999999988 5 699999999985 89999999999887664320
Q ss_pred --------CCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHH
Q 016830 176 --------KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (382)
Q Consensus 176 --------~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~ 247 (382)
..++|+++|+||||+++|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++. +++++.+.+.
T Consensus 85 ~~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~---~~~k~~~i~~~GAeVi~v~~---~~~~a~~~a~ 158 (376)
T TIGR01747 85 NDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGS---AQERVENILNLGAECTITDM---NYDDTVRLAM 158 (376)
T ss_pred hhHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHH
Confidence 145799999999999999999999999999999976 35799999999999999974 5778766554
Q ss_pred HHHHHccCCceEEecc-----cCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh--cC
Q 016830 248 RDWVTNVETTHYILGS-----VAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV--ND 320 (382)
Q Consensus 248 ~~~~~~~~~~~y~~~s-----~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~--~~ 320 (382)
+ ..++ . ..|++.+ +.+.+| ++++||.|++.|+.+|+.......||+||+|+|+||+++|++.+++ ..
T Consensus 159 ~-~~~~-~-g~~~~~~~~~~~~~~~~~---~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~ 232 (376)
T TIGR01747 159 Q-MAQQ-H-GWVVVQDTAWEGYEKIPT---WIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYS 232 (376)
T ss_pred H-HHHh-c-CcEEeccccccccccCCc---hHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcC
Confidence 4 2332 2 2444331 222333 4679999999999988732111369999999999999999999886 24
Q ss_pred C-CcEEEEEeCCCCCCCCccccccccC
Q 016830 321 K-DVRLIGVEAAGFGLDSGKHAATLSK 346 (382)
Q Consensus 321 ~-~vrViGVep~g~~~~~~~~~~sl~~ 346 (382)
+ .++||+|||++++ +...++..
T Consensus 233 ~~~p~vi~Vep~ga~----~~~~s~~~ 255 (376)
T TIGR01747 233 ENNPHSIVVEPDKAD----CLYQSAVK 255 (376)
T ss_pred CCCCEEEEEeeCCCC----HHHHHHHh
Confidence 4 3799999999984 45566544
No 61
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=4.3e-35 Score=292.13 Aligned_cols=190 Identities=24% Similarity=0.278 Sum_probs=154.9
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHH
Q 016830 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (382)
Q Consensus 119 ~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~ 198 (382)
.+| +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.+.+ +|+++|+||||+++|++|+.
T Consensus 28 ~~g-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~-~iv~aSsGN~g~alA~~a~~ 99 (353)
T PRK07409 28 GEG-NTPLIPAPNLSELL------GVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAK-AVICASTGNTSASAAAYAAR 99 (353)
T ss_pred CCC-CCCEEEchhhHHHh------CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHHH
Confidence 345 79999999999876 68999999999999999999999999999988875 78999999999999999999
Q ss_pred cCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHH
Q 016830 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (382)
Q Consensus 199 lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~ 278 (382)
+|++|+||||+... +..|+++|+.|||+|+.++. +++++.+.+.+ +.++ . ..|..++ ++...+++|
T Consensus 100 ~G~~~~ivvP~~~~--~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~a~~-l~~~-~-~~~~~~~------~n~~~~~g~ 165 (353)
T PRK07409 100 AGLKAFVLIPEGKI--ALGKLAQAVMYGAEIIQIDG---NFDDALEIVRE-LAEK-Y-PVTLVNS------VNPYRIEGQ 165 (353)
T ss_pred cCCCEEEEEcCCCC--chhhHHHHHhcCCEEEEECC---CHHHHHHHHHH-HHHh-c-CceecCC------CCchhhhhH
Confidence 99999999998631 34688899999999999974 47777655443 3332 2 2344322 222345899
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-c------CCCcEEEEEeCCCCC
Q 016830 279 AVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N------DKDVRLIGVEAAGFG 334 (382)
Q Consensus 279 ~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~------~~~vrViGVep~g~~ 334 (382)
.+++.|+.+|+ +..||+||+|+|+||+++|++.+++ . ++.+|||||||+++.
T Consensus 166 ~t~~~EI~~q~----~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~ 224 (353)
T PRK07409 166 KTAAFEIVDAL----GDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAA 224 (353)
T ss_pred HHHHHHHHHHh----CCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCC
Confidence 99999998875 3469999999999999999999986 2 235999999999874
No 62
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=5.2e-35 Score=291.51 Aligned_cols=190 Identities=24% Similarity=0.301 Sum_probs=153.5
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHH
Q 016830 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (382)
Q Consensus 119 ~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~ 198 (382)
.+| +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..++++|.+ +|+++|+||||+|+|++|++
T Consensus 25 ~~G-~TPl~~l~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~-~vV~aSsGN~G~alA~~aa~ 96 (352)
T PRK06721 25 MEG-NTPLIPLLNISKQL------GIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSE-AIICASTGNTSASAAAYAAR 96 (352)
T ss_pred CcC-CCCeeEchhhHHHh------CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHHH
Confidence 355 79999999999877 68999999999999999999999999999988865 78899999999999999999
Q ss_pred cCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHH
Q 016830 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (382)
Q Consensus 199 lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~ 278 (382)
+|++|+||||+... ++.|+++|+.+||+|+.++. +++++.+.+.+ +.++ ...|+.+ .. +| ..+++|
T Consensus 97 ~G~~~~vvvp~~~~--~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~-~~~~--~~~~~~~-~~--n~---~~~~G~ 162 (352)
T PRK06721 97 LGMKCIIVIPEGKI--AHGKLAQAVAYGAEIISIEG---NFDDALKAVRN-IAAE--EPITLVN-SV--NP---YRIEGQ 162 (352)
T ss_pred CCCcEEEEECCCCC--CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHh--CCceecc-CC--Cc---hhhhhh
Confidence 99999999998531 34688899999999999974 46776655444 3332 2234332 22 22 245799
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhh----hh-c-CCCcEEEEEeCCCCC
Q 016830 279 AVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHE----FV-N-DKDVRLIGVEAAGFG 334 (382)
Q Consensus 279 ~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~----~~-~-~~~vrViGVep~g~~ 334 (382)
.+++.|+.+|+ +..||+||+|+|+||+++|++.+ +| . +|.+|||||||+++.
T Consensus 163 ~t~~~Ei~eq~----~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~ 220 (352)
T PRK06721 163 KTAAFEICDQL----QRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAA 220 (352)
T ss_pred hhHHHHHHHHh----CCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCC
Confidence 99999998886 33699999999999999986544 44 3 489999999999875
No 63
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=6.8e-35 Score=294.52 Aligned_cols=203 Identities=21% Similarity=0.222 Sum_probs=156.5
Q ss_pred HHHhhhcCCCCCEEEccccchhhcCCCCCC-CeEEEeecCCCC-CCCcccchHHHHHHHHH--HhC--------------
Q 016830 114 GILRDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLNH-TGAHKINNAVGQALLAK--RLG-------------- 175 (382)
Q Consensus 114 ~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g-~~IylK~E~lnp-TGSfK~Rga~~~l~~a~--~~g-------------- 175 (382)
+++..+ ++|||+++++|++.+ | .+||+|+|++|+ |||||+||+.+.+..+. +.+
T Consensus 34 ~~~~~~--~~TPL~~~~~L~~~~------g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~ 105 (396)
T TIGR03528 34 QSFPGY--QPTPLAELDNLAKHL------GVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSN 105 (396)
T ss_pred hcCCCC--cCCCCcchHHHHHHh------CCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhH
Confidence 356555 489999999999988 5 799999999995 99999999999987642 222
Q ss_pred ------CCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 176 ------KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 176 ------~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
...+|+++|+||||+++|++|+++|++|+||||+.. +..|+.+|+.|||+|+.++. +++++.+.+.+.
T Consensus 106 ~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~---~~~K~~~ir~~GAeVi~~~~---~~~~a~~~a~~~ 179 (396)
T TIGR03528 106 EIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGS---AQIRLENIRAEGAECTITDL---NYDDAVRLAWKM 179 (396)
T ss_pred HHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCC---cHHHHHHHHhcCCEEEEECC---CHHHHHHHHHHH
Confidence 123799999999999999999999999999999976 35799999999999999974 467776665443
Q ss_pred HHHccCCceEEecccCCCCCc---chhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh--cCCC-c
Q 016830 250 WVTNVETTHYILGSVAGPHPY---PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV--NDKD-V 323 (382)
Q Consensus 250 ~~~~~~~~~y~~~s~~n~~p~---~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~--~~~~-v 323 (382)
.++ . ..|++.+. ..++| +..+++||.|++.|+.+|+.+.....||+||+|+|+||+++|++.+++ ..+. +
T Consensus 180 -a~~-~-g~~~v~~~-~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p 255 (396)
T TIGR03528 180 -AQE-N-GWVMVQDT-AWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERP 255 (396)
T ss_pred -HHh-c-CcEeeccc-cccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCC
Confidence 222 2 34444321 11222 124678999999999998743211369999999999999999998884 3444 5
Q ss_pred EEEEEeCCCCC
Q 016830 324 RLIGVEAAGFG 334 (382)
Q Consensus 324 rViGVep~g~~ 334 (382)
+||||||++++
T Consensus 256 ~vi~Vep~~a~ 266 (396)
T TIGR03528 256 ITVIVEPDAAD 266 (396)
T ss_pred EEEEEccCCCc
Confidence 99999999875
No 64
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-36 Score=286.64 Aligned_cols=237 Identities=24% Similarity=0.310 Sum_probs=194.9
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC----CeEEEecCcchHHHH
Q 016830 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVA 191 (382)
Q Consensus 116 l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~----~~~Vv~aSsGNhG~A 191 (382)
..+.+| .|||+.+.++..-+ .++||+|+|.+||+||.|||.++.|+..|++.|. +.+++++||||+|.+
T Consensus 46 ~~~liG-~TPlv~ln~i~~g~------~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGig 118 (362)
T KOG1252|consen 46 VRDLIG-NTPLVKLNKIAGGC------VARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIG 118 (362)
T ss_pred HHHHhC-CCceEEeccccCCc------cceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHH
Confidence 446687 59999999986644 7999999999999999999999999999998873 468999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHH---HHHHHHHHHHHccCCceEEecccCCCC
Q 016830 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD---ATSEAIRDWVTNVETTHYILGSVAGPH 268 (382)
Q Consensus 192 lA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~d---a~~~a~~~~~~~~~~~~y~~~s~~n~~ 268 (382)
+|++|+..|++|+++||+.- +..|+.++++|||+|+.++.. ..++. ++..+.+ +..+.. ..|++.|+.|+.
T Consensus 119 LA~~~a~~Gyk~i~tmP~~m---s~Ek~~~l~a~Gaeii~tp~a-~~~~~~e~ai~~a~~-l~~~~p-na~~l~Qf~np~ 192 (362)
T KOG1252|consen 119 LAYMAALRGYKCIITMPEKM---SKEKRILLRALGAEIILTPPA-AGMKGPESAIGKAEE-LLNKTP-NAYILDQFHNPG 192 (362)
T ss_pred HHHHHHHcCceEEEEechhh---hHHHHHHHHHcCCEEEecChH-HccCChHHHHHHHHH-HHHhCC-ChHHHHHhcCCC
Confidence 99999999999999999853 356888999999999999863 33433 5554433 444443 578889999887
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCCCCc-cccc--cc
Q 016830 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSG-KHAA--TL 344 (382)
Q Consensus 269 p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~~~~-~~~~--sl 344 (382)
++ ..|+ ..+..||++|+.+.+|.+|.++|+|||++|+.++++ .+++++|++|||.++.+..+ ...+ +.
T Consensus 193 Np-----~~hy---~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~ 264 (362)
T KOG1252|consen 193 NP-----LAHY---ETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHK 264 (362)
T ss_pred Cc-----cccc---ccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccc
Confidence 75 3444 444445555667799999999999999999999998 89999999999999976543 4445 67
Q ss_pred cCC-cceeeCCCcceeeecCCccccccccc
Q 016830 345 SKG-EVGVLHGALSYLLQNEDGQIIEPHSI 373 (382)
Q Consensus 345 ~~G-~~g~~~g~~~~~l~d~~~~~~~~~si 373 (382)
..| +.|++|+..+.-+.|++-++.+-.+|
T Consensus 265 I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~ 294 (362)
T KOG1252|consen 265 IQGIGYGFIPTTLDTKLVDEVLKVSSDEAI 294 (362)
T ss_pred eeccccCcCccccchHHHHHHHHhCCHHHH
Confidence 788 89999999999999998888877665
No 65
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.1e-34 Score=274.36 Aligned_cols=185 Identities=35% Similarity=0.458 Sum_probs=155.0
Q ss_pred CCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC--CeEEEecCcchHHHHHHHHHHHcCC
Q 016830 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK--TRIIAETGAGQHGVATATVCARFGL 201 (382)
Q Consensus 124 TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~--~~~Vv~aSsGNhG~AlA~aA~~lGi 201 (382)
|||+++++|++.. +.+||+|+|++|||||||+|++.+++..+.+.++ ..+|+++|+||||+|+|++|+++|+
T Consensus 1 TPl~~~~~l~~~~------~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~ 74 (244)
T cd00640 1 TPLVRLKRLSKLG------GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGL 74 (244)
T ss_pred CCeeEcccccccc------CCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 8999999998754 7899999999999999999999999999998884 5689999999999999999999999
Q ss_pred eEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHH
Q 016830 202 QCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVI 281 (382)
Q Consensus 202 ~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~ti 281 (382)
+|+||||... +..|+++|+.+||+|+.++. +++++.+.+.+ +.++. ...|+++++.| ...+.+|.++
T Consensus 75 ~~~v~~p~~~---~~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~~-~~~~~~~~~~n-----~~~~~g~~~~ 141 (244)
T cd00640 75 KCTIVMPEGA---SPEKVAQMRALGAEVVLVPG---DFDDAIALAKE-LAEED-PGAYYVNQFDN-----PANIAGQGTI 141 (244)
T ss_pred CEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHHHH-HHHhC-CCCEecCCCCC-----HHHHHHHHHH
Confidence 9999999976 46799999999999999975 36777655544 33332 23455554422 2345899999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeC
Q 016830 282 GKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEA 330 (382)
Q Consensus 282 g~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep 330 (382)
+.|+.+|+.+. .||+||+|+|+||+++|++.+|+ ..+.+|||+||+
T Consensus 142 ~~Ei~~q~~~~---~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 142 GLEILEQLGGQ---KPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred HHHHHHHcCCC---CCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 99998886321 59999999999999999999998 789999999999
No 66
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=2.1e-34 Score=282.15 Aligned_cols=197 Identities=21% Similarity=0.240 Sum_probs=150.9
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCC--CCcccchHHHHHHHHHHhCCCeEEEec--CcchHHHHHHH
Q 016830 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATAT 194 (382)
Q Consensus 119 ~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpT--GSfK~Rga~~~l~~a~~~g~~~~Vv~a--SsGNhG~AlA~ 194 (382)
+++++|||+++++|++.. +.+||+|+|++||| ||||+|++.+++..++++|.+ .|+++ |+||||+|+|+
T Consensus 3 ~~~~~TPl~~~~~l~~~~------g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~-~vv~~g~ssGN~g~alA~ 75 (311)
T TIGR01275 3 LIPWPTPIQYLPRISREI------GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGAD-TVITVGAIQSNHARATAL 75 (311)
T ss_pred CCCCCCcceechhhhhhc------CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCC-EEEEcCCchhHHHHHHHH
Confidence 456899999999998876 68999999999997 999999999999999888875 67787 56999999999
Q ss_pred HHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHH---HHHHHHccCCceEEecccCCCCCcc
Q 016830 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEA---IRDWVTNVETTHYILGSVAGPHPYP 271 (382)
Q Consensus 195 aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a---~~~~~~~~~~~~y~~~s~~n~~p~~ 271 (382)
+|+++|++|+||||+... +..|..+++.|||+|+.++.+ .+++..+.+ .++..++....+++..+..|+.
T Consensus 76 ~a~~~G~~~~ivvp~~~~--~~~~~~~~~~~Ga~v~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--- 148 (311)
T TIGR01275 76 AAKKLGLDAVLVLREKEE--LNGNLLLDKLMGAETRVYSAE--EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSL--- 148 (311)
T ss_pred HHHHhCCceEEEecCCcc--CCCCHHHHHHcCCEEEEECch--hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHH---
Confidence 999999999999998532 234666789999999999752 233322222 2211111112234434544332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCC
Q 016830 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGF 333 (382)
Q Consensus 272 ~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~ 333 (382)
-..+|.+++.|+.+|+.. . ..||+||+|+|+|||++|++.+++ .+++++|||||++.+
T Consensus 149 --~~~g~~~~~~EI~~q~~~-~-~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~ 207 (311)
T TIGR01275 149 --GTLGYVEAVLEIATQLES-E-VKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRF 207 (311)
T ss_pred --HHHHHHHHHHHHHHHHhc-C-CCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 236788888988888631 1 269999999999999999999998 788999999998765
No 67
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=4.9e-34 Score=282.93 Aligned_cols=176 Identities=22% Similarity=0.283 Sum_probs=143.8
Q ss_pred CCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCe
Q 016830 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQ 202 (382)
Q Consensus 123 ~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~ 202 (382)
.|||++. .+||+|+|++|||||||||++.+++..+++.+.+ .|+++|+||||.|+|++|+++|++
T Consensus 58 ~TPLv~~--------------~~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~-~vv~aSsGN~g~slA~~aa~~G~~ 122 (338)
T PRK06450 58 RTPLIKK--------------GNIWFKLDFLNPTGSYKDRGSVTLISYLAEKGIK-QISEDSSGNAGASIAAYGAAAGIE 122 (338)
T ss_pred CCCceec--------------CCEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC-EEEEECCcHHHHHHHHHHHHcCCC
Confidence 6999973 3699999999999999999999999999988875 789999999999999999999999
Q ss_pred EEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHH
Q 016830 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (382)
Q Consensus 203 ~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig 282 (382)
|+||||+.. +..|+.+|+.|||+|+.++. +++++.+.+ ++ . ..|++.+.. +|+ .++|+.|++
T Consensus 123 ~~i~vP~~~---~~~k~~~i~~~GA~vi~v~~---~~~~~~~~a-----~~-~-g~~~~~~~~--np~---~ieG~kTia 184 (338)
T PRK06450 123 VKIFVPETA---SGGKLKQIESYGAEVVRVRG---SREDVAKAA-----EN-S-GYYYASHVL--QPQ---FRDGIRTLA 184 (338)
T ss_pred EEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHH-----Hh-c-CeEeccCCC--Ccc---HHHHHHHHH
Confidence 999999976 46799999999999999974 456654321 11 2 334443332 333 458999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cC------CCcEEEEEeCCCCC
Q 016830 283 KETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-ND------KDVRLIGVEAAGFG 334 (382)
Q Consensus 283 ~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~------~~vrViGVep~g~~ 334 (382)
.|+.+|+.. ..||+||+|+|+||+++|++.+|+ .. +.+|||+|||+++.
T Consensus 185 ~EI~eql~~---~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~ 240 (338)
T PRK06450 185 YEIAKDLDW---KIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVS 240 (338)
T ss_pred HHHHHHcCC---CCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCC
Confidence 999887621 359999999999999999999997 22 35899999999974
No 68
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=6.4e-34 Score=287.93 Aligned_cols=188 Identities=28% Similarity=0.385 Sum_probs=155.4
Q ss_pred CCCEEEccccchhhcCCCCCCC-eEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCC
Q 016830 123 ETPLYFAERLTEHYRRPNGGGP-HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGL 201 (382)
Q Consensus 123 ~TPL~~~~~Ls~~l~~~~~~g~-~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi 201 (382)
+|||+++++|++.+ |. +||+|+|++|||||||||++.+++..+++.+.+ +|+++|+||||+|+|++|+.+|+
T Consensus 67 ~TPLv~~~~l~~~~------g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~-~vv~aSsGN~g~alA~~aa~~G~ 139 (397)
T PRK06260 67 GTPLYRCPNLEKEL------GVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVK-TVACASTGNTSASLAAYAARAGL 139 (397)
T ss_pred CCCeEEchhhHHHh------CCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHHHHcCC
Confidence 69999999999887 44 999999999999999999999999999988876 78899999999999999999999
Q ss_pred eEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHH
Q 016830 202 QCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVI 281 (382)
Q Consensus 202 ~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~ti 281 (382)
+|+||||+... +..|+.+++.+||+|+.++. +++++.+.+.+ ..++ ...|+++++ +|+ ..+||.|+
T Consensus 140 ~~~i~vP~~~~--~~~k~~~~~~~GA~vi~v~~---~~~~~~~~a~~-~~~~--~g~y~~~~~---np~---~~~G~~t~ 205 (397)
T PRK06260 140 KCYVLLPAGKV--ALGKLAQALLHGAKVLEVDG---NFDDALDMVVE-LAKE--GKIYLLNSI---NPF---RLEGQKTI 205 (397)
T ss_pred cEEEEEeCCCc--cHHHHHHHHhcCCEEEEECC---cHHHHHHHHHH-HHhh--CCEEeecCC---Cch---hhcchhhH
Confidence 99999998521 35688899999999999974 47777655544 3332 246665543 343 34899999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-c------CCCcEEEEEeCCCCC
Q 016830 282 GKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N------DKDVRLIGVEAAGFG 334 (382)
Q Consensus 282 g~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~------~~~vrViGVep~g~~ 334 (382)
+.|+.+|+.. ..||+||+|+|+||+++|++.+|+ . ++.+||||||++++.
T Consensus 206 a~Ei~eQl~~---~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~ 262 (397)
T PRK06260 206 GFEIADQLGW---EVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAA 262 (397)
T ss_pred HHHHHHHhCC---CCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCc
Confidence 9999888621 159999999999999999999997 2 245899999999974
No 69
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=7.4e-34 Score=291.11 Aligned_cols=187 Identities=20% Similarity=0.199 Sum_probs=154.7
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHH
Q 016830 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (382)
Q Consensus 119 ~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~ 198 (382)
..| +|||++++ +++.+ |.+||+|+|++|||||||||++.+++..|.+.+.+ .|+++|+||||+|+|++|++
T Consensus 63 ~~G-~TPLv~~~-~~~~~------g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~-~vv~aSsGN~g~alA~~aa~ 133 (442)
T PRK05638 63 GEG-GTPLIRAR-ISEKL------GENVYIKDETRNPTGSFRDRLATVAVSYGLPYAAN-GFIVASDGNAAASVAAYSAR 133 (442)
T ss_pred CCC-CCcEEccc-chHHh------CCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCCC-EEEEeCCChHHHHHHHHHHH
Confidence 355 69999994 77766 67999999999999999999999999999888775 68889999999999999999
Q ss_pred cCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHH
Q 016830 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (382)
Q Consensus 199 lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~ 278 (382)
+|++|+||||+.. +..|+.+|+.|||+|+.++. +++++.+.+.+. .++ ...|++++..| |+ .++||
T Consensus 134 ~G~~~~i~vp~~~---~~~k~~~~~~~GA~vi~v~~---~~~~~~~~a~~~-~~~--~~~~~~~~~~n--p~---~~eG~ 199 (442)
T PRK05638 134 AGKEAFVVVPRKV---DKGKLIQMIAFGAKIIRYGE---SVDEAIEYAEEL-ARL--NGLYNVTPEYN--II---GLEGQ 199 (442)
T ss_pred cCCCEEEEEeCCC---CHHHHHHHHhcCcEEEEECC---CHHHHHHHHHHH-HHh--CCeEecCCCCC--hh---HhhhH
Confidence 9999999999965 46799999999999999963 578877655442 322 34566554433 33 45899
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cC------CCcEEEEEeCCCCC
Q 016830 279 AVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-ND------KDVRLIGVEAAGFG 334 (382)
Q Consensus 279 ~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~------~~vrViGVep~g~~ 334 (382)
.|++.|+.+|+ + ||+||+|+|+||+++|++.+|+ .. ..+|||||||+++.
T Consensus 200 ~t~a~Ei~eq~----~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~ 256 (442)
T PRK05638 200 KTIAFELWEEI----N--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCN 256 (442)
T ss_pred HHHHHHHHHHH----C--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCC
Confidence 99999998886 2 9999999999999999999997 32 34799999998874
No 70
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=7.6e-34 Score=280.05 Aligned_cols=189 Identities=21% Similarity=0.188 Sum_probs=153.0
Q ss_pred CCCCEEEccccchhhcCCCCCCC-eEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcC
Q 016830 122 RETPLYFAERLTEHYRRPNGGGP-HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFG 200 (382)
Q Consensus 122 ~~TPL~~~~~Ls~~l~~~~~~g~-~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lG 200 (382)
++|||+++++|++.+ +. +||+|+|++|||||||+|++.+++..+.+.+.. +|+++|+||||+|+|++|+.+|
T Consensus 22 g~TPl~~~~~l~~~~------g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~-~vv~aSsGN~g~a~A~~a~~~g 94 (328)
T TIGR00260 22 GVTPLFRSPALVANV------GIKNLYVLELFHNPTLSFKDRGMAVALTKALELGND-TVLCASTGNTGAAAAAYAGKAG 94 (328)
T ss_pred CCccCccchHHHHhc------CCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHhccCC
Confidence 589999999998876 55 999999999999999999999999988887765 7899999999999999999999
Q ss_pred CeEEEEeCCC-cHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHH
Q 016830 201 LQCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHA 279 (382)
Q Consensus 201 i~~~IvmP~~-~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~ 279 (382)
++|+||||+. . ++.|+.+++.+||+|+.++. +++++.+.+.+ +.++ ...|.+++. |.+|+. +++|.
T Consensus 95 ~~~~v~~p~~~~---s~~k~~~~~~~GA~Vi~~~~---~~~~~~~~~~~-~~~~--~~~~~~~~~-n~~~~~---~~g~~ 161 (328)
T TIGR00260 95 VKVVILYPAGKI---SLGKLAQALGYNAEVVAIDG---NFDDAQRLVKQ-LFGD--KEALGLNSV-NSIPYR---LEGQK 161 (328)
T ss_pred CcEEEEECCCCC---CHHHHHHHHhcCcEEEEecC---CHHHHHHHHHH-HHhh--cCeeecccC-CCCCeE---eeeeh
Confidence 9999999996 4 35799999999999999974 47777655444 3332 123443332 212443 48999
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhhc---CC---CcEEEEEeCCCC
Q 016830 280 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN---DK---DVRLIGVEAAGF 333 (382)
Q Consensus 280 tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~~---~~---~vrViGVep~g~ 333 (382)
+++.|+.+|+.. ..||+||+|+|+||+++|++.+|+. .. .++|++|||+++
T Consensus 162 t~~~Ei~~q~~~---~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~ 218 (328)
T TIGR00260 162 TYAFEAVEQLGW---EAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGA 218 (328)
T ss_pred hHHHHHHHHhCC---CCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCC
Confidence 999999888621 2699999999999999999999872 10 239999999998
No 71
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.1e-33 Score=277.72 Aligned_cols=204 Identities=24% Similarity=0.292 Sum_probs=155.6
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCC--CCcccchHHHHHHHHHHhCCCeEEEecC--cchHHHH
Q 016830 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRIIAETG--AGQHGVA 191 (382)
Q Consensus 116 l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpT--GSfK~Rga~~~l~~a~~~g~~~~Vv~aS--sGNhG~A 191 (382)
+...+ .+|||++++.|++.+ |.+||+|+|++||+ ||||+|++.+++..+++.+.+ .|+++| +||||+|
T Consensus 9 ~~~~~-~~TPl~~~~~l~~~~------g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~-~vvt~g~s~gN~g~a 80 (331)
T PRK03910 9 LELAG-LPTPLEPLPRLSAAL------GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGAD-TLITAGAIQSNHARQ 80 (331)
T ss_pred ccccC-CCCCceEhhhhhHhh------CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCC-EEEEcCcchhHHHHH
Confidence 33445 479999999999876 68999999999996 599999999999999888876 466664 4899999
Q ss_pred HHHHHHHcCCeEEEEeCCCcHHHH-----HHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEe-cccC
Q 016830 192 TATVCARFGLQCIVYMGAQDMERQ-----ALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYIL-GSVA 265 (382)
Q Consensus 192 lA~aA~~lGi~~~IvmP~~~~~~~-----~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~-~s~~ 265 (382)
+|++|+.+|++|+||||+..+... ..|+.+|+.+||+|+.++.. +...++..+..+++.++. ...|++ .|..
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~-~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~ 158 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG-TDMDAQLEELAEELRAQG-RRPYVIPVGGS 158 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc-chHHHHHHHHHHHHHHcC-CceEEECCCCC
Confidence 999999999999999998653211 25778999999999999753 233333333333333322 223433 3443
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCC
Q 016830 266 GPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGL 335 (382)
Q Consensus 266 n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~ 335 (382)
|+. ...+|.+++.|+.+|+.+ .+..||+||+|+|+||+++|++.+++ .+++++||||||+++..
T Consensus 159 ~~~-----~~~g~~~~~~Ei~~q~~~-~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~ 223 (331)
T PRK03910 159 NAL-----GALGYVACALEIAQQLAE-GGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAA 223 (331)
T ss_pred Cch-----hHHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHH
Confidence 332 236888899999888743 12369999999999999999999998 68999999999998753
No 72
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=3e-33 Score=273.70 Aligned_cols=201 Identities=26% Similarity=0.335 Sum_probs=154.0
Q ss_pred CCEEEccccchhhcCCCCCCCeEEEeecCCCCC---CCcccchHHHHHHHHHHhCCCeEEEec--CcchHHHHHHHHHHH
Q 016830 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATATVCAR 198 (382)
Q Consensus 124 TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpT---GSfK~Rga~~~l~~a~~~g~~~~Vv~a--SsGNhG~AlA~aA~~ 198 (382)
|||+++++|++.++ .+.+||+|+|++||+ ||||+|++.+++..+.+.|.+ .|+++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g----~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~-~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLG----GKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGAD-TLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhC----CCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCC-EEEECCCchhHHHHHHHHHHHH
Confidence 89999999998761 147999999999998 566999999999999888875 56777 689999999999999
Q ss_pred cCCeEEEEeCCCcHH-----HHHHHHHHHHHcCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceEEe-cccCCCCCcc
Q 016830 199 FGLQCIVYMGAQDME-----RQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYIL-GSVAGPHPYP 271 (382)
Q Consensus 199 lGi~~~IvmP~~~~~-----~~~~kv~~~~~~GAeVv~v~~~~~-~~~da~~~a~~~~~~~~~~~~y~~-~s~~n~~p~~ 271 (382)
+|++|+||||+..+. .+..|+.+|+.+||+|+.++.... ...++..++.+.+.++ ....|++ .+.. .+|+
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~- 152 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAK-GGKPYVIPAGGS-EHPL- 152 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHc-CCceEEecCCCC-CCcc-
Confidence 999999999986531 124688899999999999975321 1223333333433332 2223443 3322 1222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCC
Q 016830 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGL 335 (382)
Q Consensus 272 ~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~ 335 (382)
...+|.+++.|+.+|+.+. +..||+||+|+|+||+++|++.+++ .++++|||||||+++..
T Consensus 153 --~~~G~~t~~~Ei~~q~~~~-~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~ 214 (307)
T cd06449 153 --GGLGYVGFVLEIAQQEEEL-GFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPE 214 (307)
T ss_pred --cHHHHHHHHHHHHHHHHhc-CCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchH
Confidence 3478999999999997432 3469999999999999999999998 78899999999998753
No 73
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=3.8e-33 Score=277.63 Aligned_cols=179 Identities=22% Similarity=0.319 Sum_probs=146.9
Q ss_pred CCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCe
Q 016830 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQ 202 (382)
Q Consensus 123 ~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~ 202 (382)
.|||+++ +.+||+|+|++|||||||||++..++..+++.|.+ +|+++|+||||+|+|++|+++|++
T Consensus 64 ~Tpl~~~-------------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~-~vv~aSsGN~g~alA~~aa~~G~~ 129 (347)
T PRK08329 64 ITPTVKR-------------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGIN-EVVIDSSGNAALSLALYSLSEGIK 129 (347)
T ss_pred CCccccC-------------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCC-EEEEECCCcHHHHHHHHHHHcCCc
Confidence 5999975 35899999999999999999999999999988875 788999999999999999999999
Q ss_pred EEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHH
Q 016830 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (382)
Q Consensus 203 ~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig 282 (382)
|+||||++. +..|+.+|+.|||+|+.++. +++++.+.+.+ +.++ .+..| +.+.. +|| .++||.|++
T Consensus 130 ~~v~vp~~~---~~~k~~~~~~~GA~v~~v~~---~~~~~~~~a~~-l~~~-~~~~~-~~~~~--np~---~~eG~~t~~ 195 (347)
T PRK08329 130 VHVFVSYNA---SKEKISLLSRLGAELHFVEG---DRMEVHEEAVK-FSKR-NNIPY-VSHWL--NPY---FLEGTKTIA 195 (347)
T ss_pred EEEEECCCC---hHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHh-cCCee-ccCCC--Cch---hhccchhHH
Confidence 999999976 46799999999999999974 25665554433 2332 22234 33332 343 348999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-c------CCCcEEEEEeCCCCC
Q 016830 283 KETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N------DKDVRLIGVEAAGFG 334 (382)
Q Consensus 283 ~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~------~~~vrViGVep~g~~ 334 (382)
.|+.+|+ + .||+||+|+|+||+++|++.+|+ . ++.+|||+|||+++.
T Consensus 196 ~Ei~eql----~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~ 249 (347)
T PRK08329 196 YEIYEQI----G-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYE 249 (347)
T ss_pred HHHHHHc----C-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCc
Confidence 9998876 3 69999999999999999999997 2 367899999999864
No 74
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.5e-33 Score=273.51 Aligned_cols=197 Identities=34% Similarity=0.381 Sum_probs=149.5
Q ss_pred hhhcCCCCCEEEcc--ccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHH
Q 016830 117 RDYVGRETPLYFAE--RLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (382)
Q Consensus 117 ~~~ig~~TPL~~~~--~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~ 194 (382)
...++ +|||++++ .+++. .+.+||+|+|++|||||||+|++.+++..+++.+.+ .|+++|+||||+|+|+
T Consensus 2 ~~~~~-~TPl~~~~~~~~~~~------~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~~-~vv~assGN~g~a~A~ 73 (306)
T PF00291_consen 2 SLGIG-PTPLVRLPSRLLSEL------GGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGGR-TVVGASSGNHGRALAY 73 (306)
T ss_dssp GGGSS-SS-EEEEHEHHHHHC------TTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTTS-EEEEESSSHHHHHHHH
T ss_pred cCCCc-CCCEEECccccchhc------cCCeEEEEECCCCCcCCcccccchhhhhhccccccc-eeeeeccCCceehhhh
Confidence 34564 79999975 44443 389999999999999999999999999999887765 6789999999999999
Q ss_pred HHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCC-ceEEecccCCCCCcch
Q 016830 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVET-THYILGSVAGPHPYPM 272 (382)
Q Consensus 195 aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~-~~~~da~~~a~~~~~~~~~~-~~y~~~s~~n~~p~~~ 272 (382)
+|+.+|++|+||||+.. +..|+.+|+.+||+|+.++... ..++++.+.+.+. ...... ... ++++ .+.
T Consensus 74 ~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~-----~~~ 143 (306)
T PF00291_consen 74 AAARLGLKCTIVVPEDV---SPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKER-AELLSPFNGE-LNQY-----NNP 143 (306)
T ss_dssp HHHHHTCEEEEEEETTS---HHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHH-HHHHHHSTTE-ESTT-----TSH
T ss_pred hhhhccccceeeecccc---ccccccceeeecceEEEccccccccccccccccccc-cccccccccc-cCcc-----cch
Confidence 99999999999999975 3579999999999999987531 1233433322221 111110 011 2222 233
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhhc--CCCcEEEEEeCCCCC
Q 016830 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN--DKDVRLIGVEAAGFG 334 (382)
Q Consensus 273 ~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~~--~~~vrViGVep~g~~ 334 (382)
..+.++.+++.|+.+|+. ..++|+||+|+|+||+++|++.+++. .|.++|||||+.+++
T Consensus 144 ~~~~g~~~~~~Ei~~q~~---~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~~~~~vigv~~~~~~ 204 (306)
T PF00291_consen 144 NVIAGYATIGLEIYEQLG---KPDPDYVVVPVGTGGTAAGIAAGLKELILPPVRVIGVEPEGSD 204 (306)
T ss_dssp HHHHHHHHHHHHHHHHHT---TESESEEEEEESSSHHHHHHHHHHHHHCHTTSEEEEEEETTGH
T ss_pred hhhhhhhhcchhcccccc---cccceEEEecCCchhHHHHHHhhhhhhhcccccceeeeccCCc
Confidence 566899999999988873 22234599999999999999999986 689999999998873
No 75
>PLN02569 threonine synthase
Probab=100.00 E-value=5.6e-33 Score=286.33 Aligned_cols=190 Identities=21% Similarity=0.265 Sum_probs=155.1
Q ss_pred CCCCEEEccccchh-hcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCC----CeEEEecCcchHHHHHHHHH
Q 016830 122 RETPLYFAERLTEH-YRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVATATVC 196 (382)
Q Consensus 122 ~~TPL~~~~~Ls~~-l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~----~~~Vv~aSsGNhG~AlA~aA 196 (382)
..|||+++++|++. + +..+||+|+|.+|||||||||++...+..+.+.+. ...|+++|+||||.|+|++|
T Consensus 132 G~TPLv~~~~l~~~~~-----G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya 206 (484)
T PLN02569 132 GNSNLFWAERLGKEFL-----GMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC 206 (484)
T ss_pred CCCceeEhhhhhHhhc-----CCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence 36999999999887 6 23699999999999999999999999988877654 25789999999999999999
Q ss_pred HHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhh
Q 016830 197 ARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRD 276 (382)
Q Consensus 197 ~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~ 276 (382)
+.+|++|+||||+... +..|+.+|+.|||+|+.++. +++++.+.+.+. .++ ...|.++++ +|+ .++
T Consensus 207 a~~Gl~~~I~vP~~~~--~~~k~~qi~a~GA~Vi~v~g---~~d~a~~~a~e~-~~~--~~~~~~n~~---Np~---~ie 272 (484)
T PLN02569 207 AAAGIPSIVFLPADKI--SIAQLVQPIANGALVLSIDT---DFDGCMRLIREV-TAE--LPIYLANSL---NSL---RLE 272 (484)
T ss_pred HhcCCeEEEEEcCCCC--CHHHHHHHHhcCCEEEEECC---CHHHHHHHHHHH-HHH--cCCEecCCC---Ccc---hhH
Confidence 9999999999998632 34689999999999999974 578876655442 222 235665543 343 348
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCCEEEEcCChhhHHhHhhhhhhc-------CCCcEEEEEeCCCCC
Q 016830 277 FHAVIGKETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFVN-------DKDVRLIGVEAAGFG 334 (382)
Q Consensus 277 g~~tig~Ei~~Qi~e~~g~-~pD~vvvpvG~GG~~aGi~~~~~~-------~~~vrViGVep~g~~ 334 (382)
||.|++.|+.+|+ +. .||+||+|+|+||+++|++.+|+. ++.+|||+||++++.
T Consensus 273 G~kT~a~EI~eQl----~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~ 334 (484)
T PLN02569 273 GQKTAAIEILQQF----DWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANAN 334 (484)
T ss_pred hHHHHHHHHHHHc----CCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCc
Confidence 9999999998875 32 499999999999999999999972 456899999999974
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=2.7e-32 Score=270.48 Aligned_cols=204 Identities=23% Similarity=0.283 Sum_probs=156.3
Q ss_pred CCCCEEEccccchhhcCCCCCCCeEEEeecCCCCC---CCcccchHHHHHHHHHHhCCCeEEEec--CcchHHHHHHHHH
Q 016830 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATATVC 196 (382)
Q Consensus 122 ~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpT---GSfK~Rga~~~l~~a~~~g~~~~Vv~a--SsGNhG~AlA~aA 196 (382)
.+|||+++++|++.++ .+.+||+|+|++||+ ||||+|.+..++..++++|.. +|+++ ++||||+|+|++|
T Consensus 13 g~TPl~~~~~l~~~~g----~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~-~vvs~ggs~gN~g~alA~~a 87 (337)
T TIGR01274 13 GPSPIHPLPRLSQHLG----GKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCT-TLVSIGGIQSNQTRQVAAVA 87 (337)
T ss_pred CCCCceEhHhhHHhcC----CCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCC-EEEECCCCcchHHHHHHHHH
Confidence 4899999999998861 124999999999986 777999999999999998986 56665 6699999999999
Q ss_pred HHcCCeEEEEeCCCcH-----HHHHHHHHHHHHcCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 016830 197 ARFGLQCIVYMGAQDM-----ERQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (382)
Q Consensus 197 ~~lGi~~~IvmP~~~~-----~~~~~kv~~~~~~GAeVv~v~~~~~-~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~ 270 (382)
+++|++|+||||+... .++..|+.+|+.|||+|+.++.... ...++..++.+.+.++ ....|++......+|+
T Consensus 88 ~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~-~~~~~~i~~~~~~~~~ 166 (337)
T TIGR01274 88 AHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGA-GGKPYPIPAGCSDHPL 166 (337)
T ss_pred HHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhc-CCceEEeCCCCCCCcc
Confidence 9999999999997421 1124699999999999999875321 2234454555544332 1233444433334454
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCC
Q 016830 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGL 335 (382)
Q Consensus 271 ~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~ 335 (382)
. ..++.+++.|+.+|+. +.+..||+||+|+|+||+++|++.+++ .++++||||||++++..
T Consensus 167 ~---~~G~~~~~~Ei~eq~~-~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~ 228 (337)
T TIGR01274 167 G---GLGFVGFAFEVREQEG-ELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPE 228 (337)
T ss_pred c---hhHHHHHHHHHHHHHH-hcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHH
Confidence 3 2567777999998863 234479999999999999999999998 68899999999999853
No 77
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.8e-32 Score=270.26 Aligned_cols=204 Identities=25% Similarity=0.352 Sum_probs=157.0
Q ss_pred hcCCCCCEEEccccchhhcCCCCCC--CeEEEeecCCCCC---CCcccchHHHHHHHHHHhCCCeEEEec--CcchHHHH
Q 016830 119 YVGRETPLYFAERLTEHYRRPNGGG--PHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVA 191 (382)
Q Consensus 119 ~ig~~TPL~~~~~Ls~~l~~~~~~g--~~IylK~E~lnpT---GSfK~Rga~~~l~~a~~~g~~~~Vv~a--SsGNhG~A 191 (382)
.+| +|||++++++++.+ | .+||+|+|++||+ ||||+|.+..++..+.+.|.. +|+++ |+||||+|
T Consensus 12 ~~g-~TPL~~~~~l~~~~------g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~-~vvs~G~s~GN~g~a 83 (337)
T PRK12390 12 TFG-PTPIHPLKRLSAHL------GGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGAD-TLVSIGGVQSNHTRQ 83 (337)
T ss_pred CCC-CCcceeHHHHHHHh------CCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCC-EEEEeCCCccHHHHH
Confidence 354 79999999999876 4 7999999999987 778999999999999988886 56666 78999999
Q ss_pred HHHHHHHcCCeEEEEeCCCcH-----HHHHHHHHHHHHcCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCCceEEecccC
Q 016830 192 TATVCARFGLQCIVYMGAQDM-----ERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVETTHYILGSVA 265 (382)
Q Consensus 192 lA~aA~~lGi~~~IvmP~~~~-----~~~~~kv~~~~~~GAeVv~v~~~~-~~~~da~~~a~~~~~~~~~~~~y~~~s~~ 265 (382)
+|++|+++|++|+||||...+ .....|+.+|+.|||+|+.++.+. ..++++.+.+.+.+.+ ..+..|.+....
T Consensus 84 lA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 162 (337)
T PRK12390 84 VAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRA-AGGKPYAIPAGA 162 (337)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHh-CCCceEEeCCcC
Confidence 999999999999999865321 112347889999999999998632 1234555555444332 223355443333
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCCC
Q 016830 266 GPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGL 335 (382)
Q Consensus 266 n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~~ 335 (382)
+.||+. ..|+.+++.|+.+|+. +++.+||+||+|+|+||+++|++.+++ .+|++|||||||+++..
T Consensus 163 ~~~~~~---~~G~~~~a~Ei~~q~~-~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~ 229 (337)
T PRK12390 163 SDHPLG---GLGFVGFAEEVRAQEA-ELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPE 229 (337)
T ss_pred CCCCcc---cHHHHHHHHHHHHHHH-hcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchH
Confidence 344442 2566677999998863 355579999999999999999999998 68999999999998754
No 78
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.1e-31 Score=265.46 Aligned_cols=201 Identities=20% Similarity=0.268 Sum_probs=149.5
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCC--CCcccchHHHHHHHHHHhCCCeEEE-ecCcchHHHH
Q 016830 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRIIA-ETGAGQHGVA 191 (382)
Q Consensus 115 ~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpT--GSfK~Rga~~~l~~a~~~g~~~~Vv-~aSsGNhG~A 191 (382)
++.-.. ++|||+++++|++.. +.+||+|+|++||+ ||||+|++.+++..+.+.|.+.+|. ++|+||||+|
T Consensus 14 ~~~l~~-~~TPl~~~~~l~~~~------g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~a 86 (329)
T PRK14045 14 RVELIP-WETPIQYLPNISREL------GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFV 86 (329)
T ss_pred CcccCC-CCCCcccchhhHHHh------CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHH
Confidence 344444 589999999999876 68999999999996 8999999999999988888864432 6999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCC--CHHHHHHHHHHHHHHccCCceEE-ecccCCCC
Q 016830 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTA--TLKDATSEAIRDWVTNVETTHYI-LGSVAGPH 268 (382)
Q Consensus 192 lA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~--~~~da~~~a~~~~~~~~~~~~y~-~~s~~n~~ 268 (382)
+|++|+++|++|+||||...+ .+.|...++.+||+|+.++.+.. ..+.+.+ ..+++.++ ....|+ ..+..|+.
T Consensus 87 lA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~-~~~~l~~~-~~~~~~~p~~~~n~~ 162 (329)
T PRK14045 87 TGLAAKKLGLDAVLVLRGKEE--LKGNYLLDKIMGIETRVYEAKDSFELMKYAEE-VAEELKGE-GRKPYIIPPGGASPV 162 (329)
T ss_pred HHHHHHHcCCeEEEEEeCCCC--CCcCHHHHHHCCCEEEEECCCcccchHHHHHH-HHHHHHhc-CCCEEEECCCCCchh
Confidence 999999999999999997532 23466678999999998874211 1223332 22333322 223444 34443332
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCC
Q 016830 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAG 332 (382)
Q Consensus 269 p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g 332 (382)
+ ..+|.....|+.+|+.+ .+.++|+||+|+|+|||++|++.+++ .+|++|||||++.+
T Consensus 163 ~-----~~g~~~~~~EI~~q~~~-~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 163 G-----TLGYVRAVGEIATQVKK-LGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred H-----HHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 2 24555444588877643 22469999999999999999999998 78999999999976
No 79
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.97 E-value=2.5e-31 Score=268.66 Aligned_cols=197 Identities=20% Similarity=0.167 Sum_probs=152.7
Q ss_pred CCCEEEccccchhhcCCCCCCC-eEEE-------eecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHH
Q 016830 123 ETPLYFAERLTEHYRRPNGGGP-HIYL-------KREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (382)
Q Consensus 123 ~TPL~~~~~Ls~~l~~~~~~g~-~Iyl-------K~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~ 194 (382)
.|||+++++|++.+ |. +||+ |+|++|||||||||++.+++..+.+.+. +.|+++|+||||+|+|+
T Consensus 62 ~tpl~~~~~L~~~l------G~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-~~Vv~aSsGN~g~alA~ 134 (398)
T TIGR03844 62 GPVTYKSEGLAREL------GLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-KTLVVASAGNTGRAFAE 134 (398)
T ss_pred CCceeehHHHHHHh------CCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH
Confidence 58999999999988 55 9999 6666999999999999999999998885 47899999999999999
Q ss_pred HHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCc-chh
Q 016830 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY-PMM 273 (382)
Q Consensus 195 aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~-~~~ 273 (382)
+|+++|++|+||||++.+. + +...++.+||+|+.++ .+++++.+.+.+. .++ . ..|. .+++ +..
T Consensus 135 ~aa~~Gi~~~I~vP~~~~~--~-~~~~~~~~ga~vv~v~---g~~d~a~~~a~~~-a~~-~-g~~~------~~~~~~p~ 199 (398)
T TIGR03844 135 VSAITGQPVILVVPKSSAD--R-LWTTEPASSVLLVTVD---GDYTDAIALADRI-ATL-P-GFVP------EGGARNVA 199 (398)
T ss_pred HHHHcCCcEEEEECCChHH--H-HHHHhhCCcEEEEECC---CCHHHHHHHHHHH-HHh-C-Cccc------cCCCCCHH
Confidence 9999999999999997532 2 2233588999999886 3578887766553 322 2 2232 1222 234
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhhc--------CCCcEEEEEeCCCCCCCCcccccccc
Q 016830 274 VRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN--------DKDVRLIGVEAAGFGLDSGKHAATLS 345 (382)
Q Consensus 274 v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~~--------~~~vrViGVep~g~~~~~~~~~~sl~ 345 (382)
.++|+.|+++|+.+|+ +..||+||+|+|+|+++.|++.+++. +.-+|+++||++++. ..+.++.
T Consensus 200 ~ieG~~Ti~~Ei~eql----~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~----p~~~a~~ 271 (398)
T TIGR03844 200 RRDGMGTVMLDAAVTI----GSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFV----PMVNAWQ 271 (398)
T ss_pred HHhhHHHHHHHHHHHc----CCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCch----HHHHHHH
Confidence 6699999999998876 33499999999999888888887652 244789999999984 4455666
Q ss_pred CCcc
Q 016830 346 KGEV 349 (382)
Q Consensus 346 ~G~~ 349 (382)
.|..
T Consensus 272 ~g~~ 275 (398)
T TIGR03844 272 EGRR 275 (398)
T ss_pred cCCC
Confidence 6643
No 80
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.97 E-value=4.6e-31 Score=252.58 Aligned_cols=255 Identities=38% Similarity=0.479 Sum_probs=199.5
Q ss_pred HHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHH
Q 016830 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (382)
Q Consensus 110 ~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG 189 (382)
+++.+.... +||||||+++.+|.+.|+ ...+||+|.|...||||||++.|+.++-.++.+|.++.+.++++|++|
T Consensus 66 ~Ev~e~Y~~-~gRPTPL~RA~~LE~~L~----tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQWG 140 (432)
T COG1350 66 EEVREAYLQ-IGRPTPLIRAKNLEEALG----TPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWG 140 (432)
T ss_pred HHHHHHHHH-hCCCCchhhhhhHHHHhC----CCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchHH
Confidence 344444433 579999999999999995 479999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCC---------------CCHHHHHHHHHHHHHHcc
Q 016830 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT---------------ATLKDATSEAIRDWVTNV 254 (382)
Q Consensus 190 ~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~---------------~~~~da~~~a~~~~~~~~ 254 (382)
.|+++||+.+|++|+|||-..+-.+...+..+|+.|||+|++.+... +++.-|+.+|+++...+
T Consensus 141 sAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~- 219 (432)
T COG1350 141 SALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKN- 219 (432)
T ss_pred HHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhC-
Confidence 99999999999999999988766666678889999999999876421 23566888888886665
Q ss_pred CCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh----c-CCCcEEEEEe
Q 016830 255 ETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV----N-DKDVRLIGVE 329 (382)
Q Consensus 255 ~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~----~-~~~vrViGVe 329 (382)
++..|.++|..| .|.-.|.+||+|+..|+ ++.+..||++|.|||||+|++|+..-|. . +..+++|+||
T Consensus 220 ~~~kY~lGSVln------hvllhQTViGlEakkQl-e~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAve 292 (432)
T COG1350 220 ENTKYSLGSVLN------HVLLHQTVIGLEAKKQL-EQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVE 292 (432)
T ss_pred CCceecchhHHH------HHHHHHHHHhHHHHHHH-HhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeC
Confidence 467898887654 24468899999999996 7788899999999999999999988774 1 2348999999
Q ss_pred CCCCCCCCccccccccCCcceeeCCCcceeeecCCccccccccccCCCCCC
Q 016830 330 AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLPWS 380 (382)
Q Consensus 330 p~g~~~~~~~~~~sl~~G~~g~~~g~~~~~l~d~~~~~~~~~si~~~l~~~ 380 (382)
|..++.........-.-...|+.|=.+-|.|=. +-.+..+| |+||.|=
T Consensus 293 p~a~P~lT~GeY~YD~gDtagltPllKMyTlGh-d~vpPpih--AgGLRYH 340 (432)
T COG1350 293 PKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGH-DYVPPPIH--AGGLRYH 340 (432)
T ss_pred CccCCccccceeeccCCchhccchhhhhhccCC-CccCCCcc--ccccccc
Confidence 998864332222222222445555555554433 34455555 6788774
No 81
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.97 E-value=6.3e-31 Score=247.21 Aligned_cols=263 Identities=21% Similarity=0.290 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhcCChhHHHH---HHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHH
Q 016830 92 LSELESALHKLADDRDFQEE---LSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (382)
Q Consensus 92 l~~l~~a~~~~~~~~~f~~~---~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l 168 (382)
+.-|..+|..++....+... ..+-+.+.|| +|||++...|++.. |++|+.|.|.+||.||-|||.|++++
T Consensus 16 ~~~L~~~y~s~r~~s~~ktke~~~~~Gv~~~IG-nTpliri~sLs~aT------GcnIlaK~Ef~NPggS~KDRvAl~ii 88 (391)
T KOG1481|consen 16 ISVLIGAYASYRATSGIKTKEPGIVSGVEGAIG-NTPLIRINSLSNAT------GCNILAKAEFLNPGGSVKDRVALYII 88 (391)
T ss_pred HHHHHHHHHHHHHhhcccccCCCccchhHHhhC-CCceEEeecccccc------ccchhhhhhccCCCCChhhhhHHHHH
Confidence 34555666644433333321 1224556787 59999999999986 89999999999999999999999999
Q ss_pred HHHHHhCC---CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCC-CCHHHHHH
Q 016830 169 LLAKRLGK---TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATS 244 (382)
Q Consensus 169 ~~a~~~g~---~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~-~~~~da~~ 244 (382)
..|++.|+ ...|+|.++|++|+++|..|..+|++|+|+||++. ...|.+.++.+||+|+.|++.. .+...-+.
T Consensus 89 r~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddq---s~eK~~ile~LGA~V~rV~pa~i~dp~~yvn 165 (391)
T KOG1481|consen 89 RTAEEKGKLVRGGTVVEGTAGSTGISLAHVARALGYKCHIYMPDDQ---SQEKSDILEFLGAEVHRVPPAPIVDPNHYVN 165 (391)
T ss_pred HHHHHcCCcccCceEEecCCCccchhHHHhhhhcCcceEEECCChH---HHHHHHHHHHhcceeeecCCcCccChhHHHH
Confidence 99998874 46899999999999999999999999999999865 4578999999999999998743 11222233
Q ss_pred HHHHHHHHccCC-----ceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-
Q 016830 245 EAIRDWVTNVET-----THYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV- 318 (382)
Q Consensus 245 ~a~~~~~~~~~~-----~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~- 318 (382)
.|.+. .++..+ ..|+.+|+.|+.+| ..|+ ..+.+||+.|..+.+|++++.+|+||+++|+..+++
T Consensus 166 ~Arr~-an~~~~~~ngi~g~fAdQFeN~AN~-----~aHy---etTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLke 236 (391)
T KOG1481|consen 166 QARRA-ANETPNASNGIRGWFADQFENVANW-----LAHY---ETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKE 236 (391)
T ss_pred HHHHH-hhhcccccCCcccchhhhhcCHHHH-----HHHh---cCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhh
Confidence 33332 222222 34666788887765 4454 555567777778899999999999999999999998
Q ss_pred cCC-CcEEEEEeCCCCCCCCc------------------cccccccCC-cceeeCCCcce--eeecCCccccccccc
Q 016830 319 NDK-DVRLIGVEAAGFGLDSG------------------KHAATLSKG-EVGVLHGALSY--LLQNEDGQIIEPHSI 373 (382)
Q Consensus 319 ~~~-~vrViGVep~g~~~~~~------------------~~~~sl~~G-~~g~~~g~~~~--~l~d~~~~~~~~~si 373 (382)
.++ .+.++-.+|-|+++++- ....++++| +..-+.++... -|+|+.-.+.|-.+|
T Consensus 237 k~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai 313 (391)
T KOG1481|consen 237 KSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAI 313 (391)
T ss_pred cCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHH
Confidence 444 49999999999976431 113566777 66666666665 347776666666655
No 82
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.3e-26 Score=233.49 Aligned_cols=234 Identities=27% Similarity=0.356 Sum_probs=174.9
Q ss_pred CCccCCCCcccccchhh-hHHHHHHH-----------HHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCC
Q 016830 74 GRFGRFGGKFVPETLMY-ALSELESA-----------LHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNG 141 (382)
Q Consensus 74 ~~~~~~GG~yvP~~l~~-~l~~l~~a-----------~~~~~~~~~f~~~~~~~l~~~ig~~TPL~~~~~Ls~~l~~~~~ 141 (382)
.....-||.|+|+.+.. +++++... |.+.+...+. ....+.+ | .||+++++++...++.
T Consensus 21 ~~~c~~cGl~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~---~~~~l~e--g-~tp~~~~~~~~~~l~~--- 91 (411)
T COG0498 21 QGLCPDCGLFLPAEYPYFSLEEIDKLLGLSYPELAWRYLELLPVGEI---PAVSLGE--G-GTPLYKAPALAAPLGV--- 91 (411)
T ss_pred hCcCCcCCcccccccCccchhhhhhhhcccccchHHHHHHHCCCCCc---chhhhhh--c-cCccccCcccchhhcc---
Confidence 35567899999998743 33333322 2222211101 0111222 2 4999999999888731
Q ss_pred CCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHH
Q 016830 142 GGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR 221 (382)
Q Consensus 142 ~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~ 221 (382)
.+.++|+|.|.+|||||||||++..++..+.+.+. .+|+++||||+|.++|.++++.|++|+|++|+.-. ...|+.+
T Consensus 92 ~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~v--s~~k~~q 168 (411)
T COG0498 92 LNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKV--SPGKLAQ 168 (411)
T ss_pred CCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCC--CHHHHHH
Confidence 13469999999999999999999999999998886 57999999999999999999999999999999622 4678999
Q ss_pred HHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEE
Q 016830 222 MRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLI 301 (382)
Q Consensus 222 ~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vv 301 (382)
|..+||+++.++ ++|||+.+...+ ..++ ... +...++.+|++. ++|.|++.|+..|+.. ..||+|+
T Consensus 169 ~~~~ga~~i~v~---G~fDda~~~vk~-~~~~--~~~--~~~~nsiNp~rl---egq~t~~fe~~~ql~~---~~p~~v~ 234 (411)
T COG0498 169 MLTLGAHVIAVD---GNFDDAQELVKE-AANR--EGL--LSAVNSINPYRL---EGQKTYAFEIAEQLGW---KAPDHVV 234 (411)
T ss_pred HHhcCCEEEEEc---CcHHHHHHHHHH-HHhh--CCc--eeeccccCHHHh---hhhhhhHhHHHHHhCC---CCCCeEE
Confidence 999999999997 468887765544 3332 221 334555677653 8999999999988732 4799999
Q ss_pred EcCChhhHHhHhhhhhhc-------CCCcEEEEEeCCCC
Q 016830 302 ACVGGGSNAMGLFHEFVN-------DKDVRLIGVEAAGF 333 (382)
Q Consensus 302 vpvG~GG~~aGi~~~~~~-------~~~vrViGVep~g~ 333 (382)
+|+|+||++.|++.+|+. ..-+++.+|++++.
T Consensus 235 vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~ 273 (411)
T COG0498 235 VPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGF 273 (411)
T ss_pred EeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhc
Confidence 999999999999999872 24568899999986
No 83
>PRK09225 threonine synthase; Validated
Probab=99.92 E-value=4.5e-24 Score=219.00 Aligned_cols=234 Identities=16% Similarity=0.077 Sum_probs=162.4
Q ss_pred CccCCCCcccccchhh------------hHHHHHHHHHHhcCChhHHH-HHHHHHhhhcC-C----CCCEEEccccchhh
Q 016830 75 RFGRFGGKFVPETLMY------------ALSELESALHKLADDRDFQE-ELSGILRDYVG-R----ETPLYFAERLTEHY 136 (382)
Q Consensus 75 ~~~~~GG~yvP~~l~~------------~l~~l~~a~~~~~~~~~f~~-~~~~~l~~~ig-~----~TPL~~~~~Ls~~l 136 (382)
....-||+|||+.+.. ++.+|.......+-..+|.+ ++..++.+... . .+||.++
T Consensus 22 Gla~DGGLyvP~~~P~l~~~~~~~~~~~sy~~~a~~il~~f~~~~i~~~~l~~~i~~ay~~F~~~~~~pl~~l------- 94 (462)
T PRK09225 22 GLAPDGGLYVPEELPKLSAEEIDALLGLSYAELAFEILSAFVGDDIPEDDLKAIIARAYTTFDHPAIAPLVQL------- 94 (462)
T ss_pred CCCCCCceEeCcccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCCcCccceEEe-------
Confidence 4567799999999852 23334434444443333443 46666665432 1 3677664
Q ss_pred cCCCCCCCeEEEeecCCCCCCCcccchHHH---HHHHHHHhCCCeEEEecCcchHHHHH-HHHHHHcCCeEEEEeCCCcH
Q 016830 137 RRPNGGGPHIYLKREDLNHTGAHKINNAVG---QALLAKRLGKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQDM 212 (382)
Q Consensus 137 ~~~~~~g~~IylK~E~lnpTGSfK~Rga~~---~l~~a~~~g~~~~Vv~aSsGNhG~Al-A~aA~~lGi~~~IvmP~~~~ 212 (382)
+.++|+...+++||||||||++.. .+..+.+ ++..+|+++||||+|.|+ |..+++.|++|+|++|+...
T Consensus 95 ------~~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~v 167 (462)
T PRK09225 95 ------DDNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKV 167 (462)
T ss_pred ------CCCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCC
Confidence 346899888999999999999876 5566666 556689999999999999 67788999999999998522
Q ss_pred HHHHHHHHHHHHc-CCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHH
Q 016830 213 ERQALNVFRMRLL-GAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALE 291 (382)
Q Consensus 213 ~~~~~kv~~~~~~-GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e 291 (382)
+..+..+|..+ |++|+.+... ++|+|+.....+.+.+..-...+-+.+.++.+|++ ..+|.+++.|+..|+.+
T Consensus 168 --s~~q~~Qm~t~~g~nv~vi~V~-G~fDD~q~~vk~~~~d~~~~~~~~l~saNSiN~~R---i~gQ~~yyfea~~ql~~ 241 (462)
T PRK09225 168 --SPVQEKQMTTLQGDNIHVVAVE-GNFDDCQALVKAAFNDEELKEKLKLSSANSINIGR---LLAQIVYYFYAYLQLGI 241 (462)
T ss_pred --CHHHHHHHHhhcCCCeEEEEeC-CCHHHHHHHHHHHhhchhhhhcCceEEEeccCHHH---HHHHHHHHHHHHHHhcc
Confidence 35678889999 9988544433 56888766554432221101112223344455554 37999999999999854
Q ss_pred HhCCCCCEEEEcCChhhHHhHhhhhhhcC-CCcEEEEEe
Q 016830 292 KWGGKPDVLIACVGGGSNAMGLFHEFVND-KDVRLIGVE 329 (382)
Q Consensus 292 ~~g~~pD~vvvpvG~GG~~aGi~~~~~~~-~~vrViGVe 329 (382)
.. +.||+|+||+|+||++.|.+.+.+.+ |-.|+|+++
T Consensus 242 ~~-~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~ 279 (462)
T PRK09225 242 EA-GEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT 279 (462)
T ss_pred cc-CCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe
Confidence 32 35999999999999999999886643 555899987
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.91 E-value=1.6e-23 Score=214.99 Aligned_cols=236 Identities=17% Similarity=0.098 Sum_probs=162.9
Q ss_pred CccCCCCcccccchhh------------hHHHHHHHHHHhcCChhHHH-HHHHHHhhhcCC-----CCCEEEccccchhh
Q 016830 75 RFGRFGGKFVPETLMY------------ALSELESALHKLADDRDFQE-ELSGILRDYVGR-----ETPLYFAERLTEHY 136 (382)
Q Consensus 75 ~~~~~GG~yvP~~l~~------------~l~~l~~a~~~~~~~~~f~~-~~~~~l~~~ig~-----~TPL~~~~~Ls~~l 136 (382)
..+.-||+|||+.+.. ++.+|.......+.+.++++ +|.+++.+.... .+||.++
T Consensus 21 Gla~DGGLyvP~~~P~~~~~~~~~~~~~sy~~~a~~vl~~f~~~~i~~~~L~~~i~~ay~~F~~~~~~pl~~l------- 93 (460)
T cd01560 21 GLAPDGGLYVPEELPKLSAEEIASWSGLSYQELAFEVLSLFIGDEIPEDDLKSLIDRAYSFFRHPDIAPLVQL------- 93 (460)
T ss_pred CCCCCCceecCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCccceEEe-------
Confidence 4567899999999852 33333333344444334443 466666654321 2666654
Q ss_pred cCCCCCCCeEEEeecCCCCCCCcccchHHHH---HHHHHHh-CCCeEEEecCcchHHHHH-HHHHHHcCCeEEEEeCCCc
Q 016830 137 RRPNGGGPHIYLKREDLNHTGAHKINNAVGQ---ALLAKRL-GKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQD 211 (382)
Q Consensus 137 ~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~---l~~a~~~-g~~~~Vv~aSsGNhG~Al-A~aA~~lGi~~~IvmP~~~ 211 (382)
+.++|++.++++||||||||++..+ +..+.+. .....|+++||||+|.|+ +..+++.|++|+|++|+..
T Consensus 94 ------~~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~ 167 (460)
T cd01560 94 ------GDNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGG 167 (460)
T ss_pred ------CCCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCC
Confidence 4578999999999999999998655 4445443 345588999999999995 7778999999999999852
Q ss_pred HHHHHHHHHHHHHcCC---EEEEEcCCCCCHHHHHHHHHHHHHHccC-CceEEecccCCCCCcchhhhhHHHHHHHHHHH
Q 016830 212 MERQALNVFRMRLLGA---EVRAVHSGTATLKDATSEAIRDWVTNVE-TTHYILGSVAGPHPYPMMVRDFHAVIGKETRR 287 (382)
Q Consensus 212 ~~~~~~kv~~~~~~GA---eVv~v~~~~~~~~da~~~a~~~~~~~~~-~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~ 287 (382)
. +..+..+|..+|+ +++.|+ ++|+|+.....+.+ .+.+ ...+-+.+.++.+|++ +.+|.+++.|+..
T Consensus 168 v--s~~Q~~Qm~t~g~~Nv~vi~V~---G~fDd~q~~vk~~~-~d~~~~~~~~l~saNSiN~~R---i~~Q~~yyf~a~~ 238 (460)
T cd01560 168 V--SPIQELQMTTLPADNVHVVAVE---GDFDDCQSLVKALF-ADEDFNKKLKLSSANSINWAR---ILAQIVYYFYAYL 238 (460)
T ss_pred C--CHHHHHHHHhhCCCceEEEEEc---CCHHHHHHHHHHHh-cChhhHhcceEEEEeccCHHH---HHHHHHHHHHHHH
Confidence 2 3568889999996 777776 46888766544432 2210 1112233444455554 3799999999999
Q ss_pred HHHHHhCCCCCEEEEcCChhhHHhHhhhhhhcC-CCcEEEEEeCCC
Q 016830 288 QALEKWGGKPDVLIACVGGGSNAMGLFHEFVND-KDVRLIGVEAAG 332 (382)
Q Consensus 288 Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~~~-~~vrViGVep~g 332 (382)
|+..+..+.||.|+||+|+||++.|.+.+.+.+ |-.|+|+++.+.
T Consensus 239 ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n 284 (460)
T cd01560 239 QLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN 284 (460)
T ss_pred HhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC
Confidence 985431136999999999999999999998743 556898876544
No 85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.88 E-value=8.4e-22 Score=188.31 Aligned_cols=202 Identities=27% Similarity=0.361 Sum_probs=156.5
Q ss_pred hhcCCCCCEEEccccchhhcCCCCCCCeEEEeecCCCC--CCCcccchHHHHHHHHHHhCCCeEEEecCcc--hHHHHHH
Q 016830 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNH--TGAHKINNAVGQALLAKRLGKTRIIAETGAG--QHGVATA 193 (382)
Q Consensus 118 ~~ig~~TPL~~~~~Ls~~l~~~~~~g~~IylK~E~lnp--TGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsG--NhG~AlA 193 (382)
+++..||||.+++++++++ |.+||+||||+.+ .|.||+|.+.+.+.+|.+.|.+ ++++.++- ||.+++|
T Consensus 10 ~l~~~pTPiq~L~rls~~l------g~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~d-TlvT~GgiQSNh~r~tA 82 (323)
T COG2515 10 ELIFGPTPIQKLPRLSAHL------GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGAD-TLVTYGGIQSNHVRQTA 82 (323)
T ss_pred ccCCCCChhhhHHHHHHhc------CeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCc-EEEEecccchhHHHHHH
Confidence 4566899999999999997 7999999999965 6889999999999999999997 67777665 9999999
Q ss_pred HHHHHcCCeEEEEeCCCc-HHHHHHHHHHHHHcCCEEEEEcCCCCCH--HHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 016830 194 TVCARFGLQCIVYMGAQD-MERQALNVFRMRLLGAEVRAVHSGTATL--KDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (382)
Q Consensus 194 ~aA~~lGi~~~IvmP~~~-~~~~~~kv~~~~~~GAeVv~v~~~~~~~--~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~ 270 (382)
++|+++|++|+.++-... ......|+.+.+.+|++++.++.+. ++ +.-..+..++. ++..+..|++.... .+|+
T Consensus 83 avA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~-d~~~~~~~~~~~e~~-~~~g~kpyvIp~GG-~~~~ 159 (323)
T COG2515 83 AVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGT-DIGINASAEELAEEV-RKQGGKPYVIPEGG-SSPL 159 (323)
T ss_pred HHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCC-ChhhchhhHHHHHHH-HhcCCCCcEeccCC-cCcc
Confidence 999999999999996532 2224568999999999999999763 33 22223333333 33345566664222 3454
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCCC
Q 016830 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFG 334 (382)
Q Consensus 271 ~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~~ 334 (382)
-. -|+.....|+..|. ++. -.+|.||+++|+|||.||+..++. .+++++|||+...+.+
T Consensus 160 g~---lGyv~~a~Ei~~Q~-~~~-~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~ 219 (323)
T COG2515 160 GA---LGYVRLALEIAEQA-EQL-LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADP 219 (323)
T ss_pred cc---ccHHHHHHHHHHHH-hhc-cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCH
Confidence 21 35556678888875 333 479999999999999999999987 7899999999998875
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.58 E-value=8.1e-14 Score=133.46 Aligned_cols=233 Identities=18% Similarity=0.194 Sum_probs=164.0
Q ss_pred CCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHH---HhhhcCCCCCEEEccccch----hhcCCCCCCCeEEEeecC
Q 016830 80 GGKFVPETLMYALSELESALHKLADDRDFQEELSGI---LRDYVGRETPLYFAERLTE----HYRRPNGGGPHIYLKRED 152 (382)
Q Consensus 80 GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~---l~~~ig~~TPL~~~~~Ls~----~l~~~~~~g~~IylK~E~ 152 (382)
|-.|++.. -+|+.+|..++..-.-|...+..- -...| ++||+..+.+.+ ++..+ -..++|+|+++
T Consensus 38 ~l~~~~l~----~~dv~dA~~Rl~RFAPyiak~FPeT~~~~GiI--ES~lv~i~~mq~~Le~~Y~~~--i~G~llLK~Ds 109 (443)
T COG3048 38 GLPYVGLT----EQDVQDAEARLQRFAPYIAKAFPETAATGGII--ESPLVEIPAMQKRLEKEYQQP--IPGRLLLKKDS 109 (443)
T ss_pred ccccCCCc----hhHHHHHHHHHHHhhHHHHHhCccccccCCee--ccchhhhHHHHHHHHHHhcCC--CCcceeeeccC
Confidence 34555555 577777777654333332221100 11223 678888866543 33111 13589999999
Q ss_pred CCC-CCCcccchHHHHHH-HHHH----hC--------------------CCeEEEecCcchHHHHHHHHHHHcCCeEEEE
Q 016830 153 LNH-TGAHKINNAVGQAL-LAKR----LG--------------------KTRIIAETGAGQHGVATATVCARFGLQCIVY 206 (382)
Q Consensus 153 lnp-TGSfK~Rga~~~l~-~a~~----~g--------------------~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~Iv 206 (382)
+-| +||.|.||..+.++ .|++ .| .+.-|...|+||.|.++....+.+|++++|.
T Consensus 110 hLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVH 189 (443)
T COG3048 110 HLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVH 189 (443)
T ss_pred CCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeecccCccceehhhhhhhhcceEEEE
Confidence 998 89999999877764 3332 22 1235888999999999999999999999999
Q ss_pred eCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHH
Q 016830 207 MGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETR 286 (382)
Q Consensus 207 mP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~ 286 (382)
|..++ .++|.+++|+.|.+|+..+. ++..|+++-.++. + .+...|++.-.++..-| -|+.+.+..+.
T Consensus 190 MSADA---r~WKKd~LRs~gV~ViEYe~---DY~~AVeeGRk~a-~-~DP~c~FiDDE~S~~LF-----LGYaVAa~Rlk 256 (443)
T COG3048 190 MSADA---RAWKKDKLRSHGVTVVEYEQ---DYGVAVEEGRKEA-E-SDPNCFFIDDENSRTLF-----LGYAVAAQRLK 256 (443)
T ss_pred ecchH---HHHHHHHHHhcCceEEEecc---hhhHHHHHhhhhh-c-cCCceEEecccchhhhh-----hhHHHHHHHHH
Confidence 98766 57999999999999999874 4677777665542 2 23445655433333323 68889999999
Q ss_pred HHHHHHhC----CCCCEEEEcCChhhHHhHhhhhhh--cCCCcEEEEEeCCCC
Q 016830 287 RQALEKWG----GKPDVLIACVGGGSNAMGLFHEFV--NDKDVRLIGVEAAGF 333 (382)
Q Consensus 287 ~Qi~e~~g----~~pD~vvvpvG~GG~~aGi~~~~~--~~~~vrViGVep~g~ 333 (382)
.|+-++-- ..|-.|..|+|.||.--|++.++| .+.+|.++-+||.-+
T Consensus 257 ~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPths 309 (443)
T COG3048 257 KQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 309 (443)
T ss_pred HHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCC
Confidence 99755421 246679999999999999999988 578999999999865
No 87
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=87.96 E-value=0.59 Score=36.80 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=28.9
Q ss_pred ccCCCCcccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCC
Q 016830 76 FGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGR 122 (382)
Q Consensus 76 ~~~~GG~yvP~~l~~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~ 122 (382)
...-||+|||+. +..+.....+...+.+|.+....+++.+++.
T Consensus 22 lA~DGGLyvP~~----iP~l~~~~l~~l~~~sy~elA~~il~~f~~~ 64 (79)
T PF14821_consen 22 LAPDGGLYVPEE----IPKLSKEELEELKNLSYAELAFEILSPFLGD 64 (79)
T ss_dssp SBTTSB-EEESS---------HHHHHHHTTS-HHHHHHHHHHHHCCC
T ss_pred CCCCCeeEecCc----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHcc
Confidence 357899999999 6666666666667889999999999888853
No 88
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.55 E-value=22 Score=30.44 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=52.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC-cHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~-~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (382)
..+++.+++.-|+++|..-.+.|-..++++... +.+........++..|.++..+..+- .-.+.++.+.+........
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDL-SDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESET-TSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 467888889999999999888877666666554 22223344566778899998887542 2334455555654433333
Q ss_pred ceEEe
Q 016830 257 THYIL 261 (382)
Q Consensus 257 ~~y~~ 261 (382)
-..++
T Consensus 81 ld~li 85 (167)
T PF00106_consen 81 LDILI 85 (167)
T ss_dssp ESEEE
T ss_pred ccccc
Confidence 33444
No 89
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=76.60 E-value=13 Score=34.30 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=39.4
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
++|...+|+.|..++.+-...+.++++++.+.+ ......++..|++++..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~----~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS----SDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH----HHHHHHHHHTTTEEEES-
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc----hhhhhhhhcccceEeecc
Confidence 356788899999999998889999999997653 234455778899987544
No 90
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=75.99 E-value=23 Score=36.29 Aligned_cols=131 Identities=17% Similarity=0.171 Sum_probs=67.1
Q ss_pred EEecCcc-hHHHHHHHHHHHcCCeEEEEeCC-CcH-HHHHHHHHHHHHcCC-EEEEEcCCCCCHH-HHHHHHHHHHHHcc
Q 016830 180 IAETGAG-QHGVATATVCARFGLQCIVYMGA-QDM-ERQALNVFRMRLLGA-EVRAVHSGTATLK-DATSEAIRDWVTNV 254 (382)
Q Consensus 180 Vv~aSsG-NhG~AlA~aA~~lGi~~~IvmP~-~~~-~~~~~kv~~~~~~GA-eVv~v~~~~~~~~-da~~~a~~~~~~~~ 254 (382)
|+..|+| .+...+.|...+.+.+++.|.-+ ... +....-.++...+|| +++.++.. +.|- |.+..+++. -+.+
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r-~ef~~~~i~~aI~a-nA~Y 78 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR-DEFAEDYIFPAIKA-NALY 78 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H-HHHHHHTHHHHHHT-T--B
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH-HHHHHHHHHHHHHH-HHHh
Confidence 5678888 89999999999999999988743 111 112334456788999 99998752 2222 333333331 1222
Q ss_pred CCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEE-cCChhhHHhHhhhhhh-cCCCcEEEE
Q 016830 255 ETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIA-CVGGGSNAMGLFHEFV-NDKDVRLIG 327 (382)
Q Consensus 255 ~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvv-pvG~GG~~aGi~~~~~-~~~~vrViG 327 (382)
++ .|.++ .+. ....++..+.+ +.++. ..++|.- |.|-|--..=+-.+++ .+|+.+|++
T Consensus 79 eg-~YpL~-----tsl------~RplIa~~~v~-~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 79 EG-RYPLS-----TSL------ARPLIAKKLVE-VAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp TT-TB--C-----CCC------HHHHHHHHHHH-HHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred CC-Ccccc-----ccc------hHHHHHHHHHH-HHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 32 23222 111 12223333332 23333 3677776 4566666555555555 688888875
No 91
>PRK06128 oxidoreductase; Provisional
Probab=73.39 E-value=46 Score=31.97 Aligned_cols=74 Identities=16% Similarity=0.085 Sum_probs=46.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
+..+|+.++|--|.++|..-...|.++++................++..|.+++.+..+-.+. +.++++.+...
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~v~~~~~~~~ 129 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDE-AFCRQLVERAV 129 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHHHH
Confidence 358888888999999999988899998876533221112234455677788877665432222 33444444433
No 92
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=72.12 E-value=62 Score=29.86 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=44.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
++.+++.++|.-|.++|......|.+++++..... +.......++..|.++..+..+-.+ .+.++++.+..
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~ 81 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA--KLAAAAESLKGQGLSAHALAFDVTD-HDAVRAAIDAF 81 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCceEEEEEccCCC-HHHHHHHHHHH
Confidence 45888888899999999998889998766543322 1222344566668777766543222 23344444443
No 93
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=72.05 E-value=20 Score=27.35 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=36.6
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCc------HHHHHHHHHHHHHcCCEEEE
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD------MERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~------~~~~~~kv~~~~~~GAeVv~ 231 (382)
|+.-++|..|.-+|...+.+|.+++++..... ++....-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 34468999999999999999999999987532 22222334456666666654
No 94
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=71.29 E-value=53 Score=34.98 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=38.0
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
.++.-+.|..|++.+..++.+|..++++-.. ..+.++.+.+|++.+.++.
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~------~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTR------PEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHHcCCeEEeccc
Confidence 4556789999999999999999885554332 2256678889999877764
No 95
>PRK07109 short chain dehydrogenase; Provisional
Probab=70.09 E-value=1.2e+02 Score=29.94 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=46.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+|+.++|--|.++|......|.+++++.... +........++..|++++.+..+-.+ .+.++.+.+...+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~--~~l~~~~~~l~~~g~~~~~v~~Dv~d-~~~v~~~~~~~~~ 81 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGE--EGLEALAAEIRAAGGEALAVVADVAD-AEAVQAAADRAEE 81 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHHH
Confidence 4578888888999999999989999987776432 11222345567789888766543222 2334444444333
No 96
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=69.37 E-value=85 Score=31.13 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|--|..++..|+.+|.+-++++... ..|.+..+.+||+.+.
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~-----~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAGASQVVAVDLN-----EDKLALARELGATATV 241 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCC-----HHHHHHHHHcCCceEe
Confidence 34445678999999999999999544444322 2356677889997544
No 97
>PRK12743 oxidoreductase; Provisional
Probab=69.24 E-value=70 Score=29.64 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=39.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~ 235 (382)
..+|+.++|.-|.++|......|.+++++....... ...-...++.+|.+++.+..+
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D 60 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG-AKETAEEVRSHGVRAEIRQLD 60 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHHHhcCCceEEEEcc
Confidence 478888888999999999999999987775432211 122234566788887776543
No 98
>PRK12937 short chain dehydrogenase; Provisional
Probab=69.17 E-value=89 Score=28.37 Aligned_cols=74 Identities=19% Similarity=0.100 Sum_probs=46.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+++.++|.-|+++|..-...|.+++++...... ......+.++.++.+++.+..+-.+. +.+.++.+...+
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~ 79 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAA-AADELVAEIEAAGGRAIAVQADVADA-AAVTRLFDAAET 79 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHH-HHHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHHHH
Confidence 357888888999999999999999998777644321 12223445666788887776432222 334444444333
No 99
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=67.91 E-value=37 Score=32.75 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v 232 (382)
+.++...+|--|.+++..|+.+|.+++++... ..|.+.++.+|++.+.-
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s------~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS------DEKVAYLKKLGFDVAFN 189 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCCEEEe
Confidence 45555557899999999999999986665543 23566788899976543
No 100
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=67.77 E-value=91 Score=29.22 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=38.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+++.++|.-|.++|......|.+++++..... ..+.....++..|.++..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQE--KAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEC
Confidence 45788888889999999998899999877765422 122233445567878766654
No 101
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=67.51 E-value=1.6e+02 Score=31.46 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=38.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
...|+..++|.-|.+.+.+|+.+|-+++ ++ +.. ..+.++.+.+||+.+.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~-D~~----~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVR-AF-DTR----PEVAEQVESMGAEFLELDF 216 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEE-EE-eCC----HHHHHHHHHcCCeEEEecc
Confidence 3457778999999999999999998533 33 222 3466778999999665543
No 102
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.66 E-value=1e+02 Score=28.31 Aligned_cols=57 Identities=18% Similarity=0.069 Sum_probs=40.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~ 235 (382)
+..+|+.++|.-|.++|......|.+++++..... ....-...++..|++++.+..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQD--GANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHHHHhcCceEEEEECC
Confidence 35788888999999999999999998777655422 1222344566778888766543
No 103
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=65.59 E-value=99 Score=28.73 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=42.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHH-HcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~-~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+|+.+++.-|.++|..-...|.+++++....... .......++ ..|.++..+..+-.+. +.+..+.+...+
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~ 83 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEE-ANKIAEDLEQKYGIKAKAYPLNILEP-ETYKELFKKIDE 83 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHHhcCCceEEEEcCCCCH-HHHHHHHHHHHH
Confidence 4578888888899999999889999987765432211 111122222 3576666655432233 334444444333
No 104
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=64.99 E-value=87 Score=29.18 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=44.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
+..+|+.++|.-|.++|......|.+++++-.. .++...-...++..|++++.+..+-.+ .+.+..+.+...
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~ 82 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDIN--QELVDKGLAAYRELGIEAHGYVCDVTD-EDGVQAMVSQIE 82 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHH
Confidence 457888888899999999988899997766432 222222334566678887666543222 233444444433
No 105
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=64.92 E-value=50 Score=31.60 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=35.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v 232 (382)
..++...+|.-|.++.-.|+.+|.+++.+... ..|.+.++.+|++-+.-
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s------~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS------DDKVAWLKELGFDAVFN 194 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCCEEEe
Confidence 45555557899999999999999986555432 23666788899975543
No 106
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=64.89 E-value=86 Score=29.07 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=44.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+|+.+++.-|.++|......|.+++++-.... ......++..|.+++.+..+-.+ .+.+..+.+...+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~ 79 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA----PETQAQVEALGRKFHFITADLIQ-QKDIDSIVSQAVE 79 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH----HHHHHHHHHcCCeEEEEEeCCCC-HHHHHHHHHHHHH
Confidence 45788888889999999999999999887653321 11233456678777665433222 3334445444333
No 107
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=64.47 E-value=1.2e+02 Score=29.91 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=33.2
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|--|.+++..|+.+|.+.++++... ..|.+.++.+|++.+.
T Consensus 179 ~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~-----~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 179 SVAVIGCGGVGDAAIAGAALAGASKIIAVDID-----DRKLEWAREFGATHTV 226 (358)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEE
Confidence 34445678899999999999999755555322 2356667889996544
No 108
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=63.55 E-value=49 Score=32.16 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=34.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHH-cCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~-~GAeVv~ 231 (382)
++.++.+.+|.-|.+++-.|+.+|.++++.... ..|.+.++. +|++-+.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~------~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS------DEKVDLLKNKLGFDDAF 202 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHhcCCceeE
Confidence 345565556999999999999999986555433 235666777 9996544
No 109
>PRK12744 short chain dehydrogenase; Provisional
Probab=63.27 E-value=99 Score=28.56 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=43.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC--CcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA--QDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~--~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
+..+++.++|.-|.++|..-...|.+++++... ...+......+.++..|.++..+..+-.+ .+.+.++.+..
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~ 83 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTT-AAAVEKLFDDA 83 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCC-HHHHHHHHHHH
Confidence 357888888889999998888889997666532 12222222334456678777665543222 23344444443
No 110
>PRK08862 short chain dehydrogenase; Provisional
Probab=63.08 E-value=1.1e+02 Score=28.20 Aligned_cols=72 Identities=13% Similarity=0.054 Sum_probs=43.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
..+++.+++.-|.++|....+.|.+++++-... +......+.++..|.+++.+.-+..+. +.++...+...+
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~ 78 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQ--SALKDTYEQCSALTDNVYSFQLKDFSQ-ESIRHLFDAIEQ 78 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCCeEEEEccCCCH-HHHHHHHHHHHH
Confidence 467777777889999999999999977654332 222233455667788776654322222 334444444333
No 111
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=62.42 E-value=43 Score=30.47 Aligned_cols=64 Identities=22% Similarity=0.097 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCeEEEecCcchHHHH-HHHHHHHcCCeEEEEeCCC---cHHHHHHHHHHHHHcCCEEE
Q 016830 167 QALLAKRLGKTRIIAETGAGQHGVA-TATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 167 ~l~~a~~~g~~~~Vv~aSsGNhG~A-lA~aA~~lGi~~~IvmP~~---~~~~~~~kv~~~~~~GAeVv 230 (382)
+...+++.+.+..+++.-..|+++. .|..|..+|++++|+.... +.+....-++.|+..|++|+
T Consensus 129 L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 129 LAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 3344456788888888777788875 4555777999999888652 33334456777888888874
No 112
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=62.21 E-value=31 Score=34.21 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhCCCeEEEecCcchHH--HHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 163 NAVGQALLAKRLGKTRIIAETGAGQHG--VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 163 ga~~~l~~a~~~g~~~~Vv~aSsGNhG--~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
.|+-|+.+-....++..|+ --++|.+ +++--.|+.+||+.+=++.+.+. ...-.++++.+||+.++.+
T Consensus 147 TAyrmL~dfv~L~~GD~vI-QNganS~VG~~ViQlaka~GiktinvVRdR~~--ieel~~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 147 TAYRMLKDFVQLNKGDSVI-QNGANSGVGQAVIQLAKALGIKTINVVRDRPN--IEELKKQLKSLGATEVITE 216 (354)
T ss_pred HHHHHHHHHHhcCCCCeee-ecCcccHHHHHHHHHHHHhCcceEEEeecCcc--HHHHHHHHHHcCCceEecH
Confidence 3566777777777777666 4456755 45555699999999999976321 1223456888999998865
No 113
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=60.86 E-value=1.3e+02 Score=27.35 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=38.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
..+|+.++|.-|+++|......|.+++++...... +.......++..|.+++....
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSP-RRVKWLEDQKALGFDFIASEG 60 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChH-HHHHHHHHHHhcCCcEEEEEc
Confidence 46888888999999999999999987765533221 122334556667888776543
No 114
>PRK06182 short chain dehydrogenase; Validated
Probab=60.67 E-value=1.1e+02 Score=28.73 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=46.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (382)
+..+++.++|.-|.++|......|.+++++....+ ++..+...+.+++..+-. + .+.++.+.+...+....
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~------~l~~~~~~~~~~~~~Dv~--~-~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVD------KMEDLASLGVHPLSLDVT--D-EASIKAAVDTIIAEEGR 74 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH------HHHHHHhCCCeEEEeeCC--C-HHHHHHHHHHHHHhcCC
Confidence 35788888889999999998889998887664321 233344457777766542 2 23344444443333323
Q ss_pred ceEEec
Q 016830 257 THYILG 262 (382)
Q Consensus 257 ~~y~~~ 262 (382)
-.+++.
T Consensus 75 id~li~ 80 (273)
T PRK06182 75 IDVLVN 80 (273)
T ss_pred CCEEEE
Confidence 334443
No 115
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=60.53 E-value=1.3e+02 Score=27.54 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=43.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
+..+++.++|.-|.++|......|.+++++-.... ......++.++.++..+..+-.+. +.+..+.+...
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~----~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~ 75 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP----SETQQQVEALGRRFLSLTADLSDI-EAIKALVDSAV 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH----HHHHHHHHhcCCceEEEECCCCCH-HHHHHHHHHHH
Confidence 34788888888999999999999998777654321 122344566777766665432232 33444444433
No 116
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=60.28 E-value=1.2e+02 Score=28.01 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=47.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (382)
+..+++.++|.-|.++|......|.+++++-.... .......++..|.++..+..+-.+.++ +..+.+...++...
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~~~~~ 84 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL---VHEVAAELRAAGGEALALTADLETYAG-AQAAMAAAVEAFGR 84 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH---HHHHHHHHHhcCCeEEEEEEeCCCHHH-HHHHHHHHHHHcCC
Confidence 45788888889999999999899998877654321 112234455668777655433223332 33444443333333
Q ss_pred ceEEec
Q 016830 257 THYILG 262 (382)
Q Consensus 257 ~~y~~~ 262 (382)
-..++.
T Consensus 85 id~lv~ 90 (260)
T PRK12823 85 IDVLIN 90 (260)
T ss_pred CeEEEE
Confidence 334443
No 117
>PRK06139 short chain dehydrogenase; Provisional
Probab=60.27 E-value=82 Score=31.09 Aligned_cols=73 Identities=22% Similarity=0.208 Sum_probs=45.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+|+..+|--|.++|......|.+++++.... +....-...++..|+++..+..+-.+ .+.++.+.+...+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~--~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~~~~ 80 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDE--EALQAVAEECRALGAEVLVVPTDVTD-ADQVKALATQAAS 80 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHH
Confidence 4578888888899999999999999977765432 21222344567789887655432222 3334445444333
No 118
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=60.20 E-value=92 Score=28.82 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=42.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
+..+++.++|.-|.++|......|.+++++-.... ......++.+|.+++.+..+-.+ .+.+..+.+..
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~ 79 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP----TETIEQVTALGRRFLSLTADLRK-IDGIPALLERA 79 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch----HHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHH
Confidence 35788899999999999999999998776532211 12334455667777666543222 23344444443
No 119
>PRK12939 short chain dehydrogenase; Provisional
Probab=59.85 E-value=1.4e+02 Score=27.16 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=37.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+++.++|.-|.++|......|.+++++... .+........++..++++..+..
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~ 63 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGL--AAEARELAAALEAAGGRAHAIAA 63 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEEc
Confidence 457888888999999999988899987766432 22122223345566777766554
No 120
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=59.32 E-value=45 Score=27.33 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 189 G~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
|..+...|+.+|.+++++-+. ..|.+.++.+||+.+....
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~------~~k~~~~~~~Ga~~~~~~~ 42 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRS------EEKLELAKELGADHVIDYS 42 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESS------HHHHHHHHHTTESEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEECC------HHHHHHHHhhccccccccc
Confidence 566777789999655555543 2467779999988877654
No 121
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=59.17 E-value=1.7e+02 Score=28.23 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=34.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..++ .++|.-|.+++..|+.+|++.++.+.... .+.+.++.+|++-+.
T Consensus 171 ~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~~-----~~~~~~~~~ga~~v~ 218 (345)
T cd08287 171 TVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRHE-----DRQALAREFGATDIV 218 (345)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHcCCceEe
Confidence 4455 56899999999999999998666665432 355667889985433
No 122
>PRK06194 hypothetical protein; Provisional
Probab=59.11 E-value=1.6e+02 Score=27.65 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=43.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
+..+|+.++|.-|.++|......|.+++++-... +........+...|.+++.+..+-.+. +.++.+.+..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~-~~~~~~~~~~ 77 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQ--DALDRAVAELRAQGAEVLGVRTDVSDA-AQVEALADAA 77 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHH
Confidence 4578888889999999999888999877665332 112223344555577886665432222 2344444433
No 123
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=58.59 E-value=13 Score=32.68 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=27.4
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~ 210 (382)
|..-++||.|.|+|...+..|.+++++.++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 4456899999999999999999999999863
No 124
>PRK08589 short chain dehydrogenase; Validated
Probab=58.48 E-value=1.3e+02 Score=28.21 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=47.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (382)
+..+|+.+++--|.++|..-...|.+++++-.. . ........++..|.+++.+..+-.+ .+.+..+.+...+....
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~--~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-E--AVSETVDKIKSNGGKAKAYHVDISD-EQQVKDFASEIKEQFGR 82 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-H--HHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHHHcCC
Confidence 357788888889999998888899998887654 2 1222344556667766555432222 23344455544433333
Q ss_pred ceEEec
Q 016830 257 THYILG 262 (382)
Q Consensus 257 ~~y~~~ 262 (382)
-..++.
T Consensus 83 id~li~ 88 (272)
T PRK08589 83 VDVLFN 88 (272)
T ss_pred cCEEEE
Confidence 234443
No 125
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.46 E-value=1.5e+02 Score=27.07 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=39.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~ 235 (382)
++.+++.++|.-|+++|..-...|.++++++..... +...-...++..|.++..+..+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRK-AAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCeEEEEEcC
Confidence 357888888999999999988899998775443221 1122334566778888776543
No 126
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.33 E-value=1.3e+02 Score=28.80 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=46.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCc
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~ 257 (382)
..+|+.++|.-|.++|......|.+++++..... +.......++..|.++..+..+-.+ .+.+.++.+...+....-
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~--~l~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g~i 118 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARRED--LLDAVADRITRAGGDAMAVPCDLSD-LDAVDALVADVEKRIGGV 118 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence 5788888899999999998889998877765421 1122233445557666555433222 233444444433333333
Q ss_pred eEEec
Q 016830 258 HYILG 262 (382)
Q Consensus 258 ~y~~~ 262 (382)
..++.
T Consensus 119 d~li~ 123 (293)
T PRK05866 119 DILIN 123 (293)
T ss_pred CEEEE
Confidence 34443
No 127
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=58.30 E-value=1.3e+02 Score=26.75 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCC
Q 016830 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (382)
Q Consensus 189 G~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~ 268 (382)
|..+.++++.+|.++.--++..+- -..-+..+...|-.|.++... .+..+++.+.+.+.+.+ .-+.+. .+
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl--~~~l~~~~~~~~~~ifllG~~----~~~~~~~~~~l~~~yP~-l~ivg~---~~ 82 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDL--FPDLLRRAEQRGKRIFLLGGS----EEVLEKAAANLRRRYPG-LRIVGY---HH 82 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHH--HHHHHHHHHHcCCeEEEEeCC----HHHHHHHHHHHHHHCCC-eEEEEe---cC
Confidence 578889999999888433332221 223344566678889988653 23344444444444433 222222 23
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhH
Q 016830 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSN 309 (382)
Q Consensus 269 p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~ 309 (382)
+|.. .... .++..+|.+ ..||.|+++.|.---
T Consensus 83 g~f~---~~~~---~~i~~~I~~---~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 83 GYFD---EEEE---EAIINRINA---SGPDIVFVGLGAPKQ 114 (172)
T ss_pred CCCC---hhhH---HHHHHHHHH---cCCCEEEEECCCCHH
Confidence 3210 1121 455555543 358999999987643
No 128
>PRK08226 short chain dehydrogenase; Provisional
Probab=58.05 E-value=1.4e+02 Score=27.51 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=42.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
+..+|+.++|.-|.++|......|.+++++-.... .......++..|.++..+..+-.+ .+.++.+.+...
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~ 77 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPE---IEKLADELCGRGHRCTAVVADVRD-PASVAAAIKRAK 77 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH---HHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHH
Confidence 45788888999999999998889999776654321 112233344557776655433222 233444444433
No 129
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=58.01 E-value=40 Score=27.68 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=45.7
Q ss_pred HHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCC-CC
Q 016830 219 VFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGG-KP 297 (382)
Q Consensus 219 v~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~-~p 297 (382)
++..+.+|++|+.++.. ++ ..+..++ ..-..++ + .... ...+++.+..++ .+
T Consensus 7 ~q~ak~~G~~vi~~~~~----~~-k~~~~~~----~Ga~~~~-~----~~~~-------------~~~~~i~~~~~~~~~ 59 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDRS----EE-KLELAKE----LGADHVI-D----YSDD-------------DFVEQIRELTGGRGV 59 (130)
T ss_dssp HHHHHHTTSEEEEEESS----HH-HHHHHHH----TTESEEE-E----TTTS-------------SHHHHHHHHTTTSSE
T ss_pred HHHHHHcCCEEEEEECC----HH-HHHHHHh----hcccccc-c----cccc-------------ccccccccccccccc
Confidence 56689999999998753 22 2222222 2212332 1 1110 022344444443 69
Q ss_pred CEEEEcCChhhHHhHhhhhhhcCCCcEEEEEeC
Q 016830 298 DVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEA 330 (382)
Q Consensus 298 D~vvvpvG~GG~~aGi~~~~~~~~~vrViGVep 330 (382)
|.+|-++|++..+.-....++.+-.+-++|+-+
T Consensus 60 d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 60 DVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp EEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred eEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 999999998877666555554333344444433
No 130
>PRK05370 argininosuccinate synthase; Validated
Probab=57.96 E-value=1.3e+02 Score=31.37 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=41.3
Q ss_pred CCCeEEEecCcc-hHHHHHHHHHHHcCCeEEEEeCCC-c--HHHHHHHHHHHHHcCC-EEEEEcC
Q 016830 175 GKTRIIAETGAG-QHGVATATVCARFGLQCIVYMGAQ-D--MERQALNVFRMRLLGA-EVRAVHS 234 (382)
Q Consensus 175 g~~~~Vv~aSsG-NhG~AlA~aA~~lGi~~~IvmP~~-~--~~~~~~kv~~~~~~GA-eVv~v~~ 234 (382)
..+++|+..|+| .+-..+-|.-.. |++++.|.-+. . .+....-.++...+|| +++.++.
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDl 73 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDC 73 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEecc
Confidence 445688999999 688888888777 99988887441 1 1112234456788999 6888764
No 131
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=57.92 E-value=50 Score=32.60 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=38.3
Q ss_pred EEecCc---chHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 180 IAETGA---GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 180 Vv~aSs---GNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
|+-.+. +|.+.++..+++++|++++++.|+.... +..-++.++..|++|...+
T Consensus 153 va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~-~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 153 IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRM-PKEILEELKAKGIKVRETE 208 (301)
T ss_pred EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccC-CHHHHHHHHHcCCEEEEEC
Confidence 444445 4899999999999999999999985311 2223455667899987753
No 132
>PRK08303 short chain dehydrogenase; Provisional
Probab=57.91 E-value=1.9e+02 Score=28.10 Aligned_cols=75 Identities=11% Similarity=-0.024 Sum_probs=43.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCc--------HHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQD--------MERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~--------~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~ 248 (382)
+..+|+.+++--|.++|..-...|.+++++..... .++.....+.++..|.+++.+..+-.+.++ ++.+.+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~-v~~~~~ 87 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQ-VRALVE 87 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH-HHHHHH
Confidence 35677777778889998888889998877654311 111122334566678777655433223333 444444
Q ss_pred HHHH
Q 016830 249 DWVT 252 (382)
Q Consensus 249 ~~~~ 252 (382)
...+
T Consensus 88 ~~~~ 91 (305)
T PRK08303 88 RIDR 91 (305)
T ss_pred HHHH
Confidence 4433
No 133
>PRK07454 short chain dehydrogenase; Provisional
Probab=57.83 E-value=1.2e+02 Score=27.56 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=43.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+++.++|.-|.++|......|.+++++...... ...-...++..+.+++.+..+-.+. +.+..+.+...+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~ 79 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDA--LEALAAELRSTGVKAAAYSIDLSNP-EAIAPGIAELLE 79 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhCCCcEEEEEccCCCH-HHHHHHHHHHHH
Confidence 357888888999999999999999988877643211 1122233455666766554332233 334444444333
No 134
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=57.40 E-value=69 Score=31.65 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=33.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHH-HcCCEEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAV 232 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~-~~GAeVv~v 232 (382)
+.++...+|--|.++...|+.+|.+++++... ..|.+.++ .+|++.+.-
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~------~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS------SQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEcCC------HHHHHHHHHhcCCCEEEE
Confidence 45555555899999999999999985554432 23556666 799976543
No 135
>PRK07478 short chain dehydrogenase; Provisional
Probab=57.29 E-value=1.6e+02 Score=27.08 Aligned_cols=73 Identities=21% Similarity=0.135 Sum_probs=44.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+++.++|.-|.++|..-...|.+++++..... ....-...++..|.++..+..+-.+ .+.+..+.+...+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 79 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA--ELDQLVAEIRAEGGEAVALAGDVRD-EAYAKALVALAVE 79 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHH
Confidence 35788888888999999998889998777654321 1122234456678777666543222 2334444444433
No 136
>PRK06181 short chain dehydrogenase; Provisional
Probab=57.09 E-value=1.5e+02 Score=27.27 Aligned_cols=71 Identities=21% Similarity=0.136 Sum_probs=43.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
..+|+.++|.-|.+++......|.+++++...... .......++..|.+++.+..+-.+ .+....+.+...
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~--~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~ 73 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETR--LASLAQELADHGGEALVVPTDVSD-AEACERLIEAAV 73 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHH
Confidence 46788888999999999888999988777654221 112233455567777665433222 233444444433
No 137
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=57.00 E-value=85 Score=30.22 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=34.6
Q ss_pred eEEEe-cCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEE
Q 016830 178 RIIAE-TGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 178 ~~Vv~-aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v 232 (382)
..++. .++|.-|.++...|+.+|.+++++... ..|.+.++.+|++.+..
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVRR------KEQVDLLKKIGAEYVLN 194 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcEEEE
Confidence 34443 678889999998999999986554432 23556678899976554
No 138
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=56.94 E-value=1.5e+02 Score=26.80 Aligned_cols=56 Identities=23% Similarity=0.113 Sum_probs=38.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
++.+++.++|.-|.+++..-...|.+++++..... +.......++..+.++..+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD--DAAATAELVEAAGGKARARQV 62 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEC
Confidence 35788888999999999998888998777664422 122233445667777766654
No 139
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=56.37 E-value=1.7e+02 Score=27.09 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=39.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+|+.++|.-|.++|......|.+++++...... ........++..|.++..+..
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 64 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEE-EANDVAEEIKKAGGEAIAVKG 64 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHHcCCeEEEEEe
Confidence 357888888889999999999999988877654321 122234455667888766543
No 140
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=56.08 E-value=1.7e+02 Score=27.02 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=44.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~ 253 (382)
+..+|+.++|.-|.++|..-...|.+++++..... .......+...|.++..+..+-.+ .+.+..+.+...+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~ 88 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTN---WDETRRLIEKEGRKVTFVQVDLTK-PESAEKVVKEALEE 88 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 45788888888999999998889999888765421 112223445567776655443222 33344444544433
No 141
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=56.05 E-value=1.4e+02 Score=26.54 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCC
Q 016830 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (382)
Q Consensus 189 G~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~ 268 (382)
|..+.++++.+|.+..--++..+- -..-...+...+-.|.++... .+..+.+.+.+.+...+ .-+.+. .+
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl--~~~ll~~~~~~~~~v~llG~~----~~~~~~~~~~l~~~yp~-l~i~g~---~~ 80 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDL--MPALLELAAQKGLRVFLLGAK----PEVLEKAAERLRARYPG-LKIVGY---HH 80 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHH--HHHHHHHHHHcCCeEEEECCC----HHHHHHHHHHHHHHCCC-cEEEEe---cC
Confidence 578889999999984444444332 223344556668899998653 23334444444444333 223222 23
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhh
Q 016830 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGS 308 (382)
Q Consensus 269 p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG 308 (382)
+|-... .-.++.++|.+ ..||.|+++.|.--
T Consensus 81 g~~~~~------~~~~i~~~I~~---~~pdiv~vglG~Pk 111 (171)
T cd06533 81 GYFGPE------EEEEIIERINA---SGADILFVGLGAPK 111 (171)
T ss_pred CCCChh------hHHHHHHHHHH---cCCCEEEEECCCCH
Confidence 331100 01234555533 35999999998754
No 142
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=55.45 E-value=1.7e+02 Score=26.77 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=44.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
..+++.++|--|.++|......|.+++++-.... +.......++..|.++..+..+-.+ .+.+.++.+...+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~ 73 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEE--TAKETAKEINQAGGKAVAYKLDVSD-KDQVFSAIDQAAE 73 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHH
Confidence 3677888899999999998899998766654321 1222334566678777666543222 3344444444433
No 143
>PRK07890 short chain dehydrogenase; Provisional
Probab=55.36 E-value=1.7e+02 Score=26.81 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=37.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
++.+|+.++|--|+++|......|.+++++..... ....-...++..|.+++.+..
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE--RLDEVAAEIDDLGRRALAVPT 61 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHHhCCceEEEec
Confidence 45788888899999999999999998777654321 112223344555776655544
No 144
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.20 E-value=1.5e+02 Score=26.97 Aligned_cols=56 Identities=27% Similarity=0.224 Sum_probs=37.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+++.++|--|.++|......|.+++++..... +.......++..|+++..+..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE--KLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 35677777899999999998889998766654322 122233446667888766554
No 145
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=54.57 E-value=1.7e+02 Score=26.64 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=38.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
..+|+.++|.-|.++|..-.+.|.++++..-... +........++..+.+++.+..
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDA-AAAEETADAVRAAGGRACVVAG 59 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEEe
Confidence 5788888889999999998888998776553321 2122234456667878776654
No 146
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=54.19 E-value=2.3e+02 Score=28.13 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=39.7
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHH-cCCEEEEEc
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRAVH 233 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~-~GAeVv~v~ 233 (382)
+|+..++|.-|...+.+++.+|-.-+|++...+ .++++.+. .|++++...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-----~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-----ERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-----HHHHHHHHhCCCeEeecC
Confidence 678899999999999999999999999985432 46666766 788876654
No 147
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=54.17 E-value=64 Score=26.69 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHH
Q 016830 165 VGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATS 244 (382)
Q Consensus 165 ~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~ 244 (382)
......|.+.+.+.+|+-+.+|++++.+|.. +-..+.+++.|+.. .-.++.-.+|..-+.++....+.++..+
T Consensus 6 ~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~--RP~~pIiavt~~~~-----~~r~l~l~~GV~p~~~~~~~~~~~~~~~ 78 (117)
T PF02887_consen 6 RAAVELAEDLNAKAIVVFTESGRTARLISKY--RPKVPIIAVTPNES-----VARQLSLYWGVYPVLIEEFDKDTEELIA 78 (117)
T ss_dssp HHHHHHHHHHTESEEEEE-SSSHHHHHHHHT---TSSEEEEEESSHH-----HHHHGGGSTTEEEEECSSHSHSHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHHhh--CCCCeEEEEcCcHH-----HHhhhhcccceEEEEeccccccHHHHHH
Confidence 3445566777877788888899988877543 35577777777633 2222334567666666543224455444
Q ss_pred HHHHH
Q 016830 245 EAIRD 249 (382)
Q Consensus 245 ~a~~~ 249 (382)
.+.+.
T Consensus 79 ~a~~~ 83 (117)
T PF02887_consen 79 EALEY 83 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 148
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=53.88 E-value=1.7e+02 Score=26.63 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=44.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+++.++|.-|.++|..-...|.+++++....+. ...-...++..+.++..+..+-.+ .+.++.+.+.+.+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~ 76 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREA--AEKVAADIRAKGGNAQAFACDITD-RDSVDTAVAAAEQ 76 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH--HHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHH
Confidence 347888888999999999988899988777644221 112223345567677665543222 3334444444433
No 149
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=53.81 E-value=1.6e+02 Score=27.19 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=43.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
+..+++.++|.-|.++|..-...|.+++++.... ++.......++..+.+++.+..+-.+ .+.++.+.+.+.
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~Dl~d-~~~i~~~~~~~~ 84 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKA--EELEEAAAHLEALGIDALWIAADVAD-EADIERLAEETL 84 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHH
Confidence 4578888888899999988888899876655332 11222233455677787666543222 233444444433
No 150
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=53.76 E-value=1.7e+02 Score=26.34 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=38.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
++.+++.++|.-|..++......|.+++++...... .......++..|.+++.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~ 61 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEA--AEALAAELRAAGGEARVLVF 61 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhH--HHHHHHHHHhcCCceEEEEc
Confidence 457888889999999999988889997666543221 12223445667888777653
No 151
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.19 E-value=1.8e+02 Score=26.46 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=45.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+++.++|--|.+++..-...|.++++..-... .........++..|.+++.+..+-.+ .+....+.+.+..
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 80 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRA-EEMNETLKMVKENGGEGIGVLADVST-REGCETLAKATID 80 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHHcCCeeEEEEeccCC-HHHHHHHHHHHHH
Confidence 35788888888999999988889999876553322 11223445677778887665433222 3334444444433
No 152
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=52.98 E-value=50 Score=32.31 Aligned_cols=48 Identities=23% Similarity=0.094 Sum_probs=34.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..|+..+.|--|.+++..|+.+|.+++++... ..|.+.++.+||+.+.
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~------~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRG------AAARRLALALGAASAG 214 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHhCCceec
Confidence 34455566888988888899999985544432 2367789999998654
No 153
>PRK05693 short chain dehydrogenase; Provisional
Probab=52.94 E-value=1.6e+02 Score=27.46 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=36.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
..+|+.++|--|.++|......|.+++++.... .+...+...|.+.+.++-
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~------~~~~~~~~~~~~~~~~Dl 53 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKA------EDVEALAAAGFTAVQLDV 53 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHCCCeEEEeeC
Confidence 467888888999999999888999887766432 123334556777666654
No 154
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.85 E-value=1.8e+02 Score=26.37 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=43.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
+..+|+.++|..|.+++......|.+++++...... ...-...++..|.+++.+..+-.+. +....+++..
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~ 78 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEEN--LKAVAEEVEAYGVKVVIATADVSDY-EEVTAAIEQL 78 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHHhCCeEEEEECCCCCH-HHHHHHHHHH
Confidence 457888888899999999888899987776644221 1112233456677877665432223 3344444443
No 155
>PRK05876 short chain dehydrogenase; Provisional
Probab=52.41 E-value=1.8e+02 Score=27.53 Aligned_cols=56 Identities=25% Similarity=0.227 Sum_probs=37.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+|+.++|--|.++|..-...|.+++++.-... ....-...++..|.++..+..
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~--~l~~~~~~l~~~~~~~~~~~~ 62 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKP--GLRQAVNHLRAEGFDVHGVMC 62 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEeC
Confidence 35788888888999999998889998766543321 112223445666877766544
No 156
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=52.34 E-value=93 Score=30.14 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=33.3
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|.-|.+++..|+.+|.+++++... ..+...++.+|++-++
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~i 212 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMGFRTVAISRG------SDKADLARKLGAHHYI 212 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHcCCcEEe
Confidence 4444558999999999999999986555432 1245567889986543
No 157
>PRK08643 acetoin reductase; Validated
Probab=52.19 E-value=1.8e+02 Score=26.66 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=43.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
..+++.++|.-|.++|......|.+++++....+. ...-...++..|.++..+..+-.+ .+.++++.+...+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~ 75 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEET--AQAAADKLSKDGGKAIAVKADVSD-RDQVFAAVRQVVD 75 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHH
Confidence 46888888899999999988899987776543221 111223345567777666543222 3334444444433
No 158
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=51.86 E-value=1.9e+02 Score=26.33 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=45.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+++.++|--|.++|......|.+++++..... +....-...++..|.+++.+..+-.+ .+....+.+...+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 80 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK-EAAENLVNELGKEGHDVYAVQADVSK-VEDANRLVEEAVN 80 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH-HHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHH
Confidence 45788888889999999988889998876543322 11122234456678888777643222 2334444444333
No 159
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=51.78 E-value=54 Score=32.40 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=33.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+..|+..++|.-|.+++..|+.+|..-++++... ..+.+.++.+|++.+.
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~-----~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLN-----PSKFEQAKKFGVTEFV 237 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEE
Confidence 3445555789999999999999998433444222 2356678899997544
No 160
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=51.73 E-value=57 Score=30.97 Aligned_cols=48 Identities=23% Similarity=0.177 Sum_probs=34.8
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|.-|..++..|+.+|.+.++++.. + ..|.+..+.+|++.+.
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~-~----~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADP-S----PDRRELALSFGATALA 170 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECC-C----HHHHHHHHHcCCcEec
Confidence 4455578999999999999999985555522 2 2466778999997654
No 161
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=51.64 E-value=1.9e+02 Score=26.33 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=43.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
+..+++.++|.-|.++|..-...|.+++++...... .......++..+.+++.+..+-.+ .+.+.++.+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~ 75 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEA--AAAAAEALQKAGGKAIGVAMDVTD-EEAINAGIDYA 75 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHH
Confidence 357888889999999999888889998877654221 112233455567777665543222 23344444433
No 162
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=51.54 E-value=91 Score=30.86 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=33.1
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|.-|.+++..|+.+|.+-++.+... ..|.+.++.+|++.++
T Consensus 189 ~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~-----~~~~~~~~~lGa~~~i 236 (368)
T cd08300 189 TVAVFGLGAVGLAVIQGAKAAGASRIIGIDIN-----PDKFELAKKFGATDCV 236 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCCEEE
Confidence 44444679999999999999999544444222 2355667889997544
No 163
>PRK07791 short chain dehydrogenase; Provisional
Probab=51.06 E-value=2.2e+02 Score=26.99 Aligned_cols=76 Identities=18% Similarity=0.094 Sum_probs=44.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC-------cHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ-------DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~-------~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
+..+|+.+++--|.++|......|.+++++.... ..+........++..|.+++.+..+-.+.+ .+....+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~-~v~~~~~~ 85 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWD-GAANLVDA 85 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHH-HHHHHHHH
Confidence 3578888888899999998888999887764321 001122233445666877766654322333 34445554
Q ss_pred HHHc
Q 016830 250 WVTN 253 (382)
Q Consensus 250 ~~~~ 253 (382)
..++
T Consensus 86 ~~~~ 89 (286)
T PRK07791 86 AVET 89 (286)
T ss_pred HHHh
Confidence 4443
No 164
>PRK06949 short chain dehydrogenase; Provisional
Probab=50.86 E-value=2e+02 Score=26.31 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=27.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+++.++|.-|.++|......|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457888888999999999999999987776654
No 165
>PRK05993 short chain dehydrogenase; Provisional
Probab=50.55 E-value=1.2e+02 Score=28.62 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=36.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
..+++.++|.-|.++|......|.+++++.... .+...++..|.+++.++-
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~------~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRKE------EDVAALEAEGLEAFQLDY 56 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH------HHHHHHHHCCceEEEccC
Confidence 478888889999999999888999988776432 123344556777766654
No 166
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=50.28 E-value=1.1e+02 Score=29.67 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=36.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..|+..++|.-|.+++..|+.+|...++++.... .+.+.++.+|++.+.
T Consensus 176 ~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~-----~~~~~~~~~g~~~v~ 224 (350)
T cd08256 176 DVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKD-----ERLALARKFGADVVL 224 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCH-----HHHHHHHHcCCcEEe
Confidence 3444477799999999999999998777665432 355678889997654
No 167
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=50.01 E-value=1.8e+02 Score=25.70 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=42.6
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC-c-HHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ-D-MERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~-~-~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
.+++.+.|..|..+|..=...+-+-+|++... . .......+..++..|++|+.+..+-.+ .+.++++++.+
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d-~~~v~~~~~~~ 75 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTD-PEAVAAALAQL 75 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTS-HHHHHHHHHTS
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccC-HHHHHHHHHHH
Confidence 57778888999999988666555444555443 1 112335788899999999887654222 33355555543
No 168
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=49.87 E-value=3.1e+02 Score=28.29 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=49.9
Q ss_pred HHHHHHHHHHh-----CCCeEEEecCcchHHHH--HHHHHHHcCCeEEEEeCCCcH-HH---------HHHHHHHHHHcC
Q 016830 164 AVGQALLAKRL-----GKTRIIAETGAGQHGVA--TATVCARFGLQCIVYMGAQDM-ER---------QALNVFRMRLLG 226 (382)
Q Consensus 164 a~~~l~~a~~~-----g~~~~Vv~aSsGNhG~A--lA~aA~~lGi~~~IvmP~~~~-~~---------~~~kv~~~~~~G 226 (382)
...++...+.+ |.+..+|+.+|+..|.| +|.+. ..|...+++.-.... +. ...-...++..|
T Consensus 24 v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G 102 (398)
T PRK13656 24 VKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAG 102 (398)
T ss_pred HHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcC
Confidence 34555554443 34567777777777777 55566 688887766522111 10 011123456678
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccc
Q 016830 227 AEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV 264 (382)
Q Consensus 227 AeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~ 264 (382)
..+..+..+ -+-.+.++...+...++...-..++++.
T Consensus 103 ~~a~~i~~D-Vss~E~v~~lie~I~e~~G~IDiLVnSa 139 (398)
T PRK13656 103 LYAKSINGD-AFSDEIKQKVIELIKQDLGQVDLVVYSL 139 (398)
T ss_pred CceEEEEcC-CCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 776554432 1223445555555444433334444443
No 169
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=49.55 E-value=1.4e+02 Score=28.90 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=34.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCC-eEEEEeCCCcHHHHHHHHHHHHH-cCCEEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGL-QCIVYMGAQDMERQALNVFRMRL-LGAEVRAV 232 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi-~~~IvmP~~~~~~~~~kv~~~~~-~GAeVv~v 232 (382)
++.++...+|.-|.++.-.|+.+|. +++++... ..|.+.++. +|++-+..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s------~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS------DEKCQLLKSELGFDAAIN 207 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC------HHHHHHHHHhcCCcEEEE
Confidence 3455655568999999889999998 56655433 234455655 99976544
No 170
>PRK07985 oxidoreductase; Provisional
Probab=49.50 E-value=2.4e+02 Score=26.93 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=44.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+|+.++|.-|.++|......|.+++++......+....-...++..|.+++.+..+-.+ .+.+..+.+...+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~ 124 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD-EKFARSLVHEAHK 124 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence 35788888889999999999899999877643322111111223345567777655432222 3334445444333
No 171
>PRK06114 short chain dehydrogenase; Provisional
Probab=49.38 E-value=2.1e+02 Score=26.27 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=44.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
+..+++.++|--|.++|..-...|.++++........ ...-.+.++..|.++..+..+-.+ .+.+.++.+...
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~ 81 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDG-LAETAEHIEAAGRRAIQIAADVTS-KADLRAAVARTE 81 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHH
Confidence 3578888888899999998888999988876543211 122234456667777655433222 233444444433
No 172
>PRK06172 short chain dehydrogenase; Provisional
Probab=49.18 E-value=2.1e+02 Score=26.14 Aligned_cols=56 Identities=27% Similarity=0.190 Sum_probs=38.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+++.++|.-|.++|......|.+++++.-... ........++..|.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAA--GGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 45788888899999999998889998777654322 112233455667877766544
No 173
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=49.13 E-value=74 Score=31.58 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=33.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..|+..++|.-|.+++..|+.+|.+++++..... .+....+.+|++.+.
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~-----~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN-----KEDEAINRLGADSFL 233 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc-----hhhhHHHhCCCcEEE
Confidence 3455577899999999999999998665544322 123446778986544
No 174
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=48.87 E-value=2e+02 Score=25.81 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=39.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~ 235 (382)
+..+++.++|.-|.+++....+.|.+++++....... .......++..+.+++.+..+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAG-AEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHHHHhcCCceEEEEcC
Confidence 4578888899999999999888899976666442211 112233455567888777543
No 175
>PRK05867 short chain dehydrogenase; Provisional
Probab=48.67 E-value=2.2e+02 Score=26.15 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=42.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
+..+|+.++|.-|.++|..-...|.+++++... .+........++..|.++..+..+-.+ .+.++++.+...
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~ 81 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARH--LDALEKLADEIGTSGGKVVPVCCDVSQ-HQQVTSMLDQVT 81 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHH
Confidence 347788888889999999888899987766533 221222334456667777665433222 233444444433
No 176
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=48.55 E-value=1e+02 Score=29.45 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=33.2
Q ss_pred CeEEEecCcc-hHHHHHHHHHH--HcCCeEEEEeCCCc-HHHHHHHHHHHHHcCCEE
Q 016830 177 TRIIAETGAG-QHGVATATVCA--RFGLQCIVYMGAQD-MERQALNVFRMRLLGAEV 229 (382)
Q Consensus 177 ~~~Vv~aSsG-NhG~AlA~aA~--~lGi~~~IvmP~~~-~~~~~~kv~~~~~~GAeV 229 (382)
.++++-++.| |-|-+++.|.+ ..|+++.||+++.. ......+..+++.+|..+
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCCE
Confidence 3566777878 45556655544 47999999996532 111133556677788665
No 177
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=48.29 E-value=98 Score=28.24 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 176 ~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
.-|.|--.|||-.|.++|-++...|-+++++....+.. . -.|.+++.+..
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~-~--------p~~~~~i~v~s 68 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP-P--------PPGVKVIRVES 68 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------------TTEEEEE-SS
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc-c--------cccceEEEecc
Confidence 34677788999999999999999999999999774321 1 24778887753
No 178
>PRK07677 short chain dehydrogenase; Provisional
Probab=48.28 E-value=2.1e+02 Score=26.30 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=45.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCc
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~ 257 (382)
..+++.++|.-|.++|......|.+++++.-.. ++...-...++..+.+++.+..+-.+ .+.++.+.+...+....-
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTK--EKLEEAKLEIEQFPGQVLTVQMDVRN-PEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCCc
Confidence 467888888899999999888999876664331 11122223345556666665433222 333444444433332333
Q ss_pred eEEec
Q 016830 258 HYILG 262 (382)
Q Consensus 258 ~y~~~ 262 (382)
..++.
T Consensus 80 d~lI~ 84 (252)
T PRK07677 80 DALIN 84 (252)
T ss_pred cEEEE
Confidence 34443
No 179
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=48.05 E-value=1.2e+02 Score=30.64 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=34.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
.|+..++|--|.+++..|+.+|.+.+++.-. . ..+.+..+.+||+.+
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~-~----~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLGAAVVIVGDL-N----PARLAQARSFGCETV 234 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCC-C----HHHHHHHHHcCCeEE
Confidence 3444788999999999999999987764422 2 246777899999853
No 180
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.58 E-value=2.7e+02 Score=26.83 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=44.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
+..+|+.++|.-|.++|..-...|.+++++-.... .........++..|.+++.+..+-.+ .+.+..+.+.
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~Dv~d-~~~~~~~~~~ 83 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASA-LDASDVLDEIRAAGAKAVAVAGDISQ-RATADELVAT 83 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCch-hHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHH
Confidence 35788888888999999988888998776543221 11223345577788888777643223 2334444444
No 181
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=47.58 E-value=1.2e+02 Score=30.18 Aligned_cols=56 Identities=5% Similarity=-0.005 Sum_probs=37.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHH---HHHHHHHHHHHcCCEEEEEc
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDME---RQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~---~~~~kv~~~~~~GAeVv~v~ 233 (382)
+.+...-+.|-+.++-.+|+++|+.++|..|+.... -...-....+..|++|..++
T Consensus 155 k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~ 213 (310)
T COG0078 155 KLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTE 213 (310)
T ss_pred EEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEec
Confidence 344444445899999999999999999999985321 11111122344599998875
No 182
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=47.29 E-value=1.9e+02 Score=26.93 Aligned_cols=74 Identities=8% Similarity=-0.078 Sum_probs=38.0
Q ss_pred eEEEecCc--chHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 178 ~~Vv~aSs--GNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
..+|+.++ +--|.++|....+.|.++++..-.....+...++..++..+.+++.+..+-.+ .+.++++.+...+
T Consensus 8 ~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~ 83 (258)
T PRK07370 8 KALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQD-DAQIEETFETIKQ 83 (258)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCC-HHHHHHHHHHHHH
Confidence 45666544 46888888888889999876542211111223444455445444444332222 3334445554433
No 183
>PRK05854 short chain dehydrogenase; Provisional
Probab=47.23 E-value=2.3e+02 Score=27.39 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=24.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..||+.+++--|.++|..-.+.|.+++++...
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 346777777778888888888889887776543
No 184
>PRK07806 short chain dehydrogenase; Provisional
Probab=46.97 E-value=2.3e+02 Score=25.82 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=37.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
++.+++.++|.-|.+++......|.+++++....... ...-...++..|.+++.+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~ 63 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPR-ANKVVAEIEAAGGRASAVGA 63 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHh-HHHHHHHHHhcCCceEEEEc
Confidence 3578888889999999999888999988776432211 11122334556777766544
No 185
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=46.93 E-value=67 Score=31.55 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=35.2
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
.|+..++|.-|...+..|+.+|.+++++..... ...|.+.++.+||+.+
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~---~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDP---PDPKADIVEELGATYV 223 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEe
Confidence 344456799999999999999998666654321 1246677899999964
No 186
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=46.91 E-value=3.8e+02 Score=28.39 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=25.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEe
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYM 207 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~Ivm 207 (382)
++.|+..+-|+-|+++|..++.+|.+++++=
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e 284 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTE 284 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4467778899999999999999999866553
No 187
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=46.63 E-value=2.2e+02 Score=26.39 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=26.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEe
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYM 207 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~Ivm 207 (382)
+..+++.++|.-|.++|......|.+++++-
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 36 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLD 36 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4578888888999999999999999987764
No 188
>PRK06483 dihydromonapterin reductase; Provisional
Probab=46.63 E-value=2.2e+02 Score=25.70 Aligned_cols=52 Identities=19% Similarity=0.112 Sum_probs=36.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
..+++.++|--|.++|..-...|.+++++-..... ..+.++..|++.+.++.
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~~~~~~~~~~D~ 55 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYP-----AIDGLRQAGAQCIQADF 55 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchh-----HHHHHHHcCCEEEEcCC
Confidence 47888888899999999988899988877543221 12345566877766654
No 189
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=46.47 E-value=72 Score=31.23 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=34.2
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|.-|.+....|+.+|.+-++++... ..|++..+.+||+.+.
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~-----~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVS-----PRSLSLAREMGADKLV 219 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCC-----HHHHHHHHHcCCcEEe
Confidence 34445679999999999999999655544322 2466778899998654
No 190
>PRK07832 short chain dehydrogenase; Provisional
Probab=46.39 E-value=1.6e+02 Score=27.51 Aligned_cols=50 Identities=30% Similarity=0.224 Sum_probs=33.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
..+|+.++|--|.++|......|.+++++-...+ ........++..|+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~--~~~~~~~~~~~~~~~~ 51 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDAD--GLAQTVADARALGGTV 51 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCCc
Confidence 3678888889999999998899998776654322 1122234456667654
No 191
>PTZ00323 NAD+ synthase; Provisional
Probab=45.96 E-value=2.6e+02 Score=27.55 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=40.7
Q ss_pred HHhCCCeEEEecCcc-hHHHHHHHHHHHcCC-------eEEEEeCCC-cHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 172 KRLGKTRIIAETGAG-QHGVATATVCARFGL-------QCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 172 ~~~g~~~~Vv~aSsG-NhG~AlA~aA~~lGi-------~~~IvmP~~-~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
++.+.+..|+.-|+| .....++.+.+.+|. -..++||.. +......-...++.+|.+.+.++-
T Consensus 42 ~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi 113 (294)
T PTZ00323 42 RRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQ 113 (294)
T ss_pred HHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEEC
Confidence 344666788888888 566666666666764 244677843 222122234557899999988875
No 192
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.76 E-value=2.3e+02 Score=25.54 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=37.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~ 235 (382)
+..+++.++|.-|..+|......|.++++++.... +........++..+.++..+..+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D 63 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE-EAAQELLEEIKEEGGDAIAVKAD 63 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCeEEEEECC
Confidence 35788888899999999988888999877633322 11122223344457777666543
No 193
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=45.74 E-value=56 Score=33.76 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=39.0
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCc--HHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQD--MERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~--~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++||.|.-+|..+.++|.+++++..... .......++.++..|.+++.
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 466688999999999999999999999886521 11122334567788888875
No 194
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=45.29 E-value=2.4e+02 Score=25.76 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=37.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+++.++|.-|.++|......|.+++++...... ...-...++..|.++..+..
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~ 67 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAAT--LEAAVAALRAAGGAAEALAF 67 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHH--HHHHHHHHHhcCCceEEEEc
Confidence 357888888899999999988899988777654221 11223345566766655543
No 195
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.99 E-value=2.3e+02 Score=25.37 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=38.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
++.+++.++|.-|++++......|.+++++....... ...-...++..+.++..+..
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 63 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEA-AEELVEAVEALGRRAQAVQA 63 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHHHhcCCceEEEEC
Confidence 3588889999999999999889999987766553321 11122334456767766654
No 196
>PRK05650 short chain dehydrogenase; Provisional
Probab=44.96 E-value=2.6e+02 Score=25.97 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=37.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+.+++.++|.-|.++|..-...|.+++++..... +.+.....++..|.+++.+..
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~ 56 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEE--GGEETLKLLREAGGDGFYQRC 56 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 4678888899999999998889999877764422 122233445666777766654
No 197
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=44.95 E-value=1.5e+02 Score=28.82 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=32.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|..|.+++..|+.+|.+.++++... ..|...++.+|++.+.
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~~ 225 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALGPANIIVVDID-----EAKLEAAKAAGADVVV 225 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCcEEe
Confidence 34445789999999999999999655555332 2345567788986443
No 198
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=44.75 E-value=2.4e+02 Score=25.50 Aligned_cols=99 Identities=9% Similarity=0.010 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEecccCCCC
Q 016830 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (382)
Q Consensus 189 G~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~ 268 (382)
|..+.++++.+|.+..--++..+- -..-+......|..|.++... .+..+.+.+.+.+++.+.. +.+. +
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl--~~~l~~~~~~~~~~vfllG~~----~~v~~~~~~~l~~~yP~l~-i~g~----~ 81 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDL--MEELCQRAGKEKLPIFLYGGK----PDVLQQLKVKLIKEYPKLK-IVGA----F 81 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHH--HHHHHHHHHHcCCeEEEECCC----HHHHHHHHHHHHHHCCCCE-EEEE----C
Confidence 477888999998764323332221 122334455677889988653 2334444444444443322 2221 3
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChh
Q 016830 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307 (382)
Q Consensus 269 p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~G 307 (382)
+|-. .-.. .++.++|.+ ..||.|+|+.|.=
T Consensus 82 g~f~---~~~~---~~i~~~I~~---s~~dil~VglG~P 111 (177)
T TIGR00696 82 GPLE---PEER---KAALAKIAR---SGAGIVFVGLGCP 111 (177)
T ss_pred CCCC---hHHH---HHHHHHHHH---cCCCEEEEEcCCc
Confidence 3311 1111 445566644 2589999998864
No 199
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=44.69 E-value=2.5e+02 Score=25.71 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=25.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+.+++.++|..|.++|......|.+++++..
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 3678888999999999999999998776653
No 200
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=44.65 E-value=2.5e+02 Score=25.75 Aligned_cols=74 Identities=16% Similarity=0.070 Sum_probs=43.9
Q ss_pred CCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 176 ~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
.+..+++.++|.-|.++|..-...|.+++++...... ...-...++..|.+++.+..+-.+ .+.+.++.+...+
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~--~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~ 84 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA--ANHVVDEIQQLGGQAFACRCDITS-EQELSALADFALS 84 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHH
Confidence 3457888888889999999888899988777644221 111223345567776655433222 2334444444333
No 201
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=44.64 E-value=1.5e+02 Score=28.76 Aligned_cols=49 Identities=20% Similarity=0.124 Sum_probs=33.0
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v 232 (382)
.|+..++|..|.+++..|+.+|.+.+++....+ .|...++.+|++.+..
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~-----~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAGASKIIVSEPSE-----ARRELAEELGATIVLD 223 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHhCCCEEEC
Confidence 344446789999999999999995444443322 3455667889976553
No 202
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=44.43 E-value=2.2e+02 Score=29.32 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=41.2
Q ss_pred CCeEEEecCcc-hHHHHHHHHHHHcCCeEEEEeCC-CcH-HHHHHHHHHHHHcCCE-EEEEcC
Q 016830 176 KTRIIAETGAG-QHGVATATVCARFGLQCIVYMGA-QDM-ERQALNVFRMRLLGAE-VRAVHS 234 (382)
Q Consensus 176 ~~~~Vv~aSsG-NhG~AlA~aA~~lGi~~~IvmP~-~~~-~~~~~kv~~~~~~GAe-Vv~v~~ 234 (382)
.+++|+.+|+| .+.+++-|.-...|..++-|+-+ ..+ +.-..-.++...+||. .+.++.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~ 66 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDA 66 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeec
Confidence 35688999999 89999999999999998888743 111 1112233456678998 555543
No 203
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=43.84 E-value=76 Score=31.11 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=32.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCC-eEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGL-QCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi-~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+.++. ++|.-|.+++..|+.+|+ +++++... ..+...++.+|++-+.
T Consensus 180 ~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~~~------~~~~~~~~~~g~~~vi 227 (361)
T cd08231 180 TVVVQ-GAGPLGLYAVAAAKLAGARRVIVIDGS------PERLELAREFGADATI 227 (361)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCC------HHHHHHHHHcCCCeEE
Confidence 45554 679999999999999999 55544322 2244567889985433
No 204
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=43.77 E-value=1.6e+02 Score=28.46 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=33.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
...++...++..|.+++..|+.+|++++++.... .+.+.++.+|++-+.
T Consensus 167 ~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~v~ 215 (341)
T cd08297 167 DWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGD------EKLELAKELGADAFV 215 (341)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH------HHHHHHHHcCCcEEE
Confidence 3455555556799999999999999876665442 234456778986544
No 205
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=43.77 E-value=1.4e+02 Score=26.47 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCeEEEecCcch-HHHHHHHHHH--HcCCeEEEEe--CC-CcHHHHHHHHHHHHHcCCEEEEE
Q 016830 176 KTRIIAETGAGQ-HGVATATVCA--RFGLQCIVYM--GA-QDMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 176 ~~~~Vv~aSsGN-hG~AlA~aA~--~lGi~~~Ivm--P~-~~~~~~~~kv~~~~~~GAeVv~v 232 (382)
..++++-++.|| -|-+++.+-+ ..|++++|+. |. ...+..+.+.+.++.+|.+++..
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 345667777784 5556665544 4899999844 32 22222455777888888777653
No 206
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=43.58 E-value=1.1e+02 Score=27.48 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=48.3
Q ss_pred cccchHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC------CcHHHHHHHHHHHHHcCCEEEEE
Q 016830 159 HKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGA------QDMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 159 fK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~------~~~~~~~~kv~~~~~~GAeVv~v 232 (382)
+-++...-.+..|++.+.+..|+.+++|.++.-++-+...- +++++|.-. +..+-...-...++..|++|..-
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~ 89 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQ 89 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHHcCceeeee
Confidence 44555666678889999999999999999887665543332 777776631 11111233445678889998763
No 207
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=43.46 E-value=2.3e+02 Score=26.10 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=25.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+.+++.++|.-|+++|......|.++++.-.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 3678888889999999999999998776654
No 208
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=43.42 E-value=1.4e+02 Score=26.38 Aligned_cols=48 Identities=8% Similarity=0.141 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHcCCeEEEEeCCC--cHHHHHH---HHHHHHHcCCEEEEEc
Q 016830 186 GQHGVATATVCARFGLQCIVYMGAQ--DMERQAL---NVFRMRLLGAEVRAVH 233 (382)
Q Consensus 186 GNhG~AlA~aA~~lGi~~~IvmP~~--~~~~~~~---kv~~~~~~GAeVv~v~ 233 (382)
+|.+.+++.++.++|+.++++.|+. .+..+.. -.+..+..|.++...+
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 6999999999999999999999986 2221111 1133455699998873
No 209
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=43.37 E-value=96 Score=30.77 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=32.5
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|.-|.+++..|+.+|.+-+|.+... ..+.+.++.+||+.+.
T Consensus 188 ~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~-----~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 188 TVAVFGLGGIGLSVIQGARMAKASRIIAIDIN-----PAKFELAKKLGATDCV 235 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHhCCCeEE
Confidence 44445789999999999999999434444221 2356667889996544
No 210
>PRK08628 short chain dehydrogenase; Provisional
Probab=43.36 E-value=2.6e+02 Score=25.58 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=43.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
+..+++.++|--|.++|..-...|.+++++...... . .-...++..|.+++.+..+-.+ .+....+.+..
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~--~-~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~ 77 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPD--D-EFAEELRALQPRAEFVQVDLTD-DAQCRDAVEQT 77 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhh--H-HHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHH
Confidence 357888888899999999988899998877644221 1 1234456678777666543222 23344444443
No 211
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=43.15 E-value=2.6e+02 Score=25.39 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=36.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
..+++.++|--|+.++..-...|.+++++...... .+.-...++..+.++..+..
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAG--AEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCceEEEEC
Confidence 47788888999999999988889988877654221 11222234456777766554
No 212
>PRK08265 short chain dehydrogenase; Provisional
Probab=43.04 E-value=2.8e+02 Score=25.73 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=40.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+++.++|--|.++|......|.+++++-.... . .....+.+|.+++.+..+-.+ .+.+.++.+...+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~---~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~ 76 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD--N---GAAVAASLGERARFIATDITD-DAAIERAVATVVA 76 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--H---HHHHHHHhCCeeEEEEecCCC-HHHHHHHHHHHHH
Confidence 45788888888999999998889998777643311 0 111233446666555432222 2334444444333
No 213
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=43.03 E-value=1.7e+02 Score=27.07 Aligned_cols=61 Identities=20% Similarity=0.134 Sum_probs=43.8
Q ss_pred HHHhCCCeEEEecCcchHHHH-HHHHHHHcCCeEEEEeCCC---cHHHHHHHHHHHHHcCCEEEE
Q 016830 171 AKRLGKTRIIAETGAGQHGVA-TATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~A-lA~aA~~lGi~~~IvmP~~---~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+++.+.++.+++.-..|+++. .|.-+..+|++++|+-... +.+....-+..|+..|++|+.
T Consensus 141 L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~ 205 (212)
T PTZ00331 141 LKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILLT 205 (212)
T ss_pred HHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 345688888888888888875 4555778999999888652 233334457788899998864
No 214
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=42.66 E-value=1.9e+02 Score=24.99 Aligned_cols=61 Identities=25% Similarity=0.233 Sum_probs=43.1
Q ss_pred HHHhCCCeEEEecCcchHHH-HHHHHHHHcCCeEEEEeCCC---cHHHHHHHHHHHHHcCCEEEE
Q 016830 171 AKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~-AlA~aA~~lGi~~~IvmP~~---~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.++.|.+..|++.-..|.++ ++|.-|..+|++++++.... +.+....-+..|+..|++|+.
T Consensus 83 L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~~~h~~al~~~~~~~~~v~~ 147 (157)
T cd01012 83 LKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGSRSKEDHELALARMRQAGAVLTT 147 (157)
T ss_pred HHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCCCCHHHHHHHHHHHHHCCCEEee
Confidence 34567788888777777775 45555888999999988652 333334467788889999854
No 215
>PRK09135 pteridine reductase; Provisional
Probab=42.26 E-value=2.6e+02 Score=25.19 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=28.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+|+.++|.-|..++..-...|.+++++...
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 357888888999999999988899999888764
No 216
>PRK06123 short chain dehydrogenase; Provisional
Probab=42.12 E-value=2.7e+02 Score=25.27 Aligned_cols=72 Identities=19% Similarity=0.132 Sum_probs=41.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
..+++.++|.-|.++|..-...|..+++.... ..+........++..|.+++.+..+-.+ .+.+.++++...
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~ 75 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLR-NRDAAEAVVQAIRRQGGEALAVAADVAD-EADVLRLFEAVD 75 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCC-CHHHHHHHHHHHHhCCCcEEEEEeccCC-HHHHHHHHHHHH
Confidence 46788888889999988877888876554422 2222222344466678776655432222 333444444433
No 217
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=42.02 E-value=1.8e+02 Score=27.61 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=31.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|..|.+++..|+..|.++++..+.. .+.+.++.+|++.+.
T Consensus 163 ~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~~~ 209 (336)
T cd08276 163 TVLVQGTGGVSLFALQFAKAAGARVIATSSSD------EKLERAKALGADHVI 209 (336)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHcCCCEEE
Confidence 34444678899999999999999966655432 244446667876543
No 218
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=42.02 E-value=2.6e+02 Score=25.19 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=41.6
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
+++.++|.-|.++|....+.|.+++++..... ++.......++..+.++..+..+-.+.+ .+..+.+.
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Dl~~~~-~~~~~~~~ 69 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGR-SDAESVVSAIQAQGGNARLLQFDVADRV-ACRTLLEA 69 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHHcCCeEEEEEccCCCHH-HHHHHHHH
Confidence 57788888999999998889999776654322 1122233445667877776654322333 34444443
No 219
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=42.01 E-value=1.7e+02 Score=27.68 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=33.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..++...+|.-|++++..|+.+|.+.+++.... .+...++.+|++-+.
T Consensus 142 ~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~~~ 189 (324)
T cd08292 142 WLIQNAAGGAVGKLVAMLAAARGINVINLVRRD------AGVAELRALGIGPVV 189 (324)
T ss_pred EEEEcccccHHHHHHHHHHHHCCCeEEEEecCH------HHHHHHHhcCCCEEE
Confidence 345545568999999999999999877766432 234445667885443
No 220
>PLN02740 Alcohol dehydrogenase-like
Probab=41.60 E-value=98 Score=30.89 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=34.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+..|+..++|.-|.+++..|+.+|.+-++.+-.. ..+.+.++.+|++.+.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~-----~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN-----PEKFEKGKEMGITDFI 248 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC-----hHHHHHHHHcCCcEEE
Confidence 3345555789999999999999998534444221 2366678889997544
No 221
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.53 E-value=2.8e+02 Score=25.42 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=41.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+|+.++|--|.++|..-...|.+++++..... .+.+.++..+.+.+.++-. + .+.+.++.+...+
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~-----~~~~~l~~~~~~~~~~Dl~--~-~~~~~~~~~~~~~ 75 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE-----NEAKELREKGVFTIKCDVG--N-RDQVKKSKEVVEK 75 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH-----HHHHHHHhCCCeEEEecCC--C-HHHHHHHHHHHHH
Confidence 35788888889999999998889998877654322 1223344446666666542 2 2334445454433
No 222
>PRK08017 oxidoreductase; Provisional
Probab=41.50 E-value=2.2e+02 Score=26.00 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=36.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
..+|+.++|.-|.++|......|.+++++.... .+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~------~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP------DDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH------HHhHHHHhCCCeEEEeec
Confidence 477788889999999999888899876665431 233345566887776654
No 223
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.44 E-value=95 Score=31.27 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=34.9
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 182 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 182 ~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
..+.|-.|.---..|+.+|++++++-... +.|.+.++.+|||..++..
T Consensus 187 I~GlGGLGh~aVq~AKAMG~rV~vis~~~-----~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 187 IVGLGGLGHMAVQYAKAMGMRVTVISTSS-----KKKEEAIKSLGADVFVDST 234 (360)
T ss_pred EecCcccchHHHHHHHHhCcEEEEEeCCc-----hhHHHHHHhcCcceeEEec
Confidence 33444466655667899999999887543 2467789999999988754
No 224
>PRK08278 short chain dehydrogenase; Provisional
Probab=41.38 E-value=3e+02 Score=25.74 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=38.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHH-----HHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDME-----RQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~-----~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+++.++|--|.++|......|.+++++....... ....-.+.++..|.+++.+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVG 69 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEe
Confidence 3578888888899999999999999988887543210 001112345667888776654
No 225
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=41.36 E-value=1.3e+02 Score=28.77 Aligned_cols=47 Identities=26% Similarity=0.247 Sum_probs=32.1
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|--|.+++..|+.+|.+.+++... ..+.+.++.+|++.+.
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTGPDVVLVGRH------SEKLALARRLGVETVL 204 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEcCC------HHHHHHHHHcCCcEEe
Confidence 3444467899999999999999995444322 1245567778987543
No 226
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=41.34 E-value=1.1e+02 Score=26.65 Aligned_cols=62 Identities=27% Similarity=0.205 Sum_probs=43.0
Q ss_pred HHHHhCCCeEEEecCcchHHH-HHHHHHHHcCCeEEEEeCC---CcHHHHHHHHHHHHHcCCEEEE
Q 016830 170 LAKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGA---QDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhG~-AlA~aA~~lGi~~~IvmP~---~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.+++.|.+..+++.-..+.++ +.|..|..+|++++|+-.. .+++....-+..|+..|++|+.
T Consensus 106 ~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~h~~~l~~l~~~~~~v~t 171 (174)
T PF00857_consen 106 ILRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDACASYSPEAHEAALEELRKRGAEVIT 171 (174)
T ss_dssp HHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEEEBSSHHHHHHHHHHHHHHTSEEE-
T ss_pred cccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhhcCCCHHHHHHHHHHHHhCCCEEEe
Confidence 344577788888777777776 4555588899999998854 3444455577788889999875
No 227
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=41.20 E-value=3e+02 Score=25.57 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=24.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEe
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYM 207 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~Ivm 207 (382)
..+|+.+++.-|.++|......|.++++..
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~~V~~~~ 32 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGYRVVLHY 32 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCCeEEEEc
Confidence 357778888899999988888898877654
No 228
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=41.12 E-value=2.8e+02 Score=25.33 Aligned_cols=72 Identities=25% Similarity=0.252 Sum_probs=42.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
+..+|+.++|.-|.++|......|.+++++.-.. ++...-...++..|.+++.+..+-.+ .+.+....+...
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~ 81 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITA--ERAELAVAKLRQEGIKAHAAPFNVTH-KQEVEAAIEHIE 81 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHH
Confidence 4578888889999999999888998877655331 11122233455557776655433222 233444444433
No 229
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=40.98 E-value=1.7e+02 Score=29.00 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=36.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v 232 (382)
+..++.+.+|.-|..+--.|+.+|...+++.-. ..|.+.++.+||+.+.-
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s------~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS------SEKLELLKELGADHVIN 193 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEecC------HHHHHHHHhcCCCEEEc
Confidence 457777778999988888899999844444432 23555899999987664
No 230
>PRK07062 short chain dehydrogenase; Provisional
Probab=40.60 E-value=3e+02 Score=25.39 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=27.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+++.+++.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 357888888889999999999999998777654
No 231
>PRK08251 short chain dehydrogenase; Provisional
Probab=40.33 E-value=2.9e+02 Score=25.11 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=40.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHc--CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL--GAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~--GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
..+++.++|.-|.++|..-.+.|.+++++..... +...-...++.. |++++.+..+-.+. +.+..+.+....
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~ 77 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTD--RLEELKAELLARYPGIKVAVAALDVNDH-DQVFEVFAEFRD 77 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhhCCCceEEEEEcCCCCH-HHHHHHHHHHHH
Confidence 4788888999999999988888987766654322 111111222222 66776665432333 334444444333
No 232
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=40.21 E-value=1.2e+02 Score=30.30 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=33.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..|+..++|.-|.+++..|+.+|.+++++....+ .+.+.++.+|++.+.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~-----~~~~~a~~lGa~~~i 228 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSE-----KEREAIDRLGADSFL 228 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChH-----HhHHHHHhCCCcEEE
Confidence 3455567799999999999999998655544321 234556788987543
No 233
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=40.19 E-value=2e+02 Score=27.71 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=31.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
+.+++. ++|.-|.+++..|+.+|+..+++... . ..+...++.+|+.+
T Consensus 169 ~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~~~-~----~~~~~~~~~~g~~~ 215 (344)
T cd08284 169 DTVAVI-GCGPVGLCAVLSAQVLGAARVFAVDP-V----PERLERAAALGAEP 215 (344)
T ss_pred CEEEEE-CCcHHHHHHHHHHHHcCCceEEEEcC-C----HHHHHHHHHhCCeE
Confidence 344444 68999999999999999843344432 2 23455677799875
No 234
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=40.16 E-value=91 Score=30.19 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=32.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
++++ .++|--|.+++..|+.+|.+-++++... ..|.+.++.+|++.+.
T Consensus 166 ~vlV-~G~G~vG~~~~~~ak~~G~~~vi~~~~~-----~~~~~~~~~~ga~~~i 213 (339)
T cd08239 166 TVLV-VGAGPVGLGALMLARALGAEDVIGVDPS-----PERLELAKALGADFVI 213 (339)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEE
Confidence 3444 4678899999999999999933333222 2355667889996554
No 235
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=39.89 E-value=2.8e+02 Score=24.95 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=43.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
..+++.++|.-|.+++......|.++++++.... +........++.+|.+++.+..+-.+ .+.+..+.+..
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~i~~~~~~~ 73 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNL-HAAQEVVNLITQAGGKAFVLQADISD-ENQVVAMFTAI 73 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHhCCCeEEEEEccCCC-HHHHHHHHHHH
Confidence 4678888889999999998889998877654322 21222334456677777665443222 23344454543
No 236
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=39.88 E-value=3.6e+02 Score=26.17 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=41.7
Q ss_pred CCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCC
Q 016830 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (382)
Q Consensus 176 ~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~ 235 (382)
.+..+||..|+.-|.++|..-++.|.+++++-...+.- .....+.-+.+|.+|...+-+
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL-~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKL-EALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHH-HHHHHHHHHhhCceEEEEECc
Confidence 44688899999999999999999999999999764321 122333334457777665543
No 237
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.88 E-value=3.1e+02 Score=25.34 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=43.0
Q ss_pred eEEEecCc--chHHHHHHHHHHHcCCeEEEEeCC----C-----cHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHH
Q 016830 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMGA----Q-----DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEA 246 (382)
Q Consensus 178 ~~Vv~aSs--GNhG~AlA~aA~~lGi~~~IvmP~----~-----~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a 246 (382)
..+|+.++ +.-|.++|......|.++++.... . ...........++..|.+++.+..+-.+ .+.+..+
T Consensus 8 ~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~i~~~ 86 (256)
T PRK12859 8 VAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQ-NDAPKEL 86 (256)
T ss_pred EEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHH
Confidence 46666665 378899998888899988775311 0 1111112234566789888776543222 3334455
Q ss_pred HHHHHHc
Q 016830 247 IRDWVTN 253 (382)
Q Consensus 247 ~~~~~~~ 253 (382)
...+.+.
T Consensus 87 ~~~~~~~ 93 (256)
T PRK12859 87 LNKVTEQ 93 (256)
T ss_pred HHHHHHH
Confidence 5544443
No 238
>PRK09134 short chain dehydrogenase; Provisional
Probab=39.33 E-value=3.1e+02 Score=25.21 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=42.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
+..+++.++|.-|..+|....+.|.+++++.-.... ....-...++..|.+++.+..+-.+. +.+.++.+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~ 80 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRD-EAEALAAEIRALGRRAVALQADLADE-AEVRALVAR 80 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHhcCCeEEEEEcCCCCH-HHHHHHHHH
Confidence 357888888899999999999999988776543221 11112233445688876654332222 334444444
No 239
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=39.30 E-value=1.8e+02 Score=27.50 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=34.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+.+++...+|..|++++..|+.+|.+.+++.... .+...++.+|++.+.
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYGAATIITTSSE------EKVDFCKKLAAIILI 190 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHcCCcEEE
Confidence 3455555578999999999999999976654331 244446779996544
No 240
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=39.21 E-value=90 Score=32.31 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=35.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
++.|+..+.|.-|+.+|..++.+|.+++++=+ + +.+....+.+|++++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~--d----~~R~~~A~~~G~~~~ 249 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEV--D----PICALQAAMEGYEVM 249 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC--C----hhhHHHHHhcCCEEc
Confidence 45677889999999999999999998655322 2 234556778898764
No 241
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=39.06 E-value=1.9e+02 Score=27.78 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=31.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcC-CeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lG-i~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
++++ .++|.-|.+++..|+.+| .+++.+... ..+...++.+|++-+.
T Consensus 170 ~vlI-~g~~~vg~~~~~~a~~~g~~~v~~~~~~------~~~~~~~~~~g~~~~~ 217 (340)
T cd05284 170 TVVV-IGVGGLGHIAVQILRALTPATVIAVDRS------EEALKLAERLGADHVL 217 (340)
T ss_pred EEEE-EcCcHHHHHHHHHHHHhCCCcEEEEeCC------HHHHHHHHHhCCcEEE
Confidence 3444 446779999999999999 776655432 1244567889985443
No 242
>PRK06197 short chain dehydrogenase; Provisional
Probab=39.05 E-value=3.5e+02 Score=25.77 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=26.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+|+.++|--|.++|..-...|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 457888888888999988888889988777654
No 243
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=39.00 E-value=1.4e+02 Score=29.45 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=31.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|--|.+++..|+.+|.+.+++..... .+...++.+|++.+.
T Consensus 183 ~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~-----~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 183 RGGILGLGGVGHMGVKIAKAMGHHVTVISSSDK-----KREEALEHLGADDYL 230 (357)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHH-----HHHHHHHhcCCcEEe
Confidence 344447789999999999999998665553311 223345678997543
No 244
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=38.80 E-value=2.2e+02 Score=28.59 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=35.8
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCc-------HHHHHHHHHHHHHcCCEEEE
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD-------MERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~-------~~~~~~kv~~~~~~GAeVv~ 231 (382)
|+.-++|..|.-+|...+.+|.+++++.+... ++....-...++..|.+++.
T Consensus 147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 205 (396)
T PRK09754 147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILL 205 (396)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 45567899999999999999999999876421 11122234455667776654
No 245
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=38.75 E-value=1.5e+02 Score=27.93 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=34.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+..++...+|.-|.+++..|+.+|.+.+..... ..+...++.+|+....
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~~~ 182 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAGAHVVAVVGS------PARAEGLRELGAAEVV 182 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcEEE
Confidence 445666666899999999999999986555432 1355567778986433
No 246
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=38.66 E-value=1.1e+02 Score=27.94 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=30.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
+.++...++ .|++++..++.+|.+++++.+.. .+.+.++.+|++.+
T Consensus 137 ~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~ 182 (271)
T cd05188 137 TVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSD------EKLELAKELGADHV 182 (271)
T ss_pred EEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCH------HHHHHHHHhCCcee
Confidence 355554444 99999999999998876665432 23444566776543
No 247
>PRK09242 tropinone reductase; Provisional
Probab=38.58 E-value=3.1e+02 Score=25.09 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=42.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHc--CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL--GAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~--GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
..+++.++|.-|.++|......|.+++++..... ........++.. +.+++.+..+-.+ .+.+..+.+...+
T Consensus 11 ~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~ 84 (257)
T PRK09242 11 TALITGASKGIGLAIAREFLGLGADVLIVARDAD--ALAQARDELAEEFPEREVHGLAADVSD-DEDRRAILDWVED 84 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHHH
Confidence 4778888889999999999889998777664321 111122233333 6777766543222 2334444444333
No 248
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=38.48 E-value=3.2e+02 Score=27.65 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=30.3
Q ss_pred EEecCcchHHHHHHHHHHH-cCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCC
Q 016830 180 IAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~-lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~ 235 (382)
|+.+++++.+..++..+-. -|=.+.+.-|. .. .-...++.+|++++.++.+
T Consensus 144 Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~-y~----~~~~~~~~~g~~~~~v~~~ 195 (431)
T PRK15481 144 IDLTSGAIDAIERLLCAHLLPGDSVAVEDPC-FL----SSINMLRYAGFSASPVSVD 195 (431)
T ss_pred EEEecCcHHHHHHHHHHhCCCCCEEEEeCCC-cH----HHHHHHHHcCCeEEeeccC
Confidence 4455667888776665432 34333333343 22 2234578899999998764
No 249
>PRK07775 short chain dehydrogenase; Provisional
Probab=38.38 E-value=3.4e+02 Score=25.40 Aligned_cols=56 Identities=20% Similarity=0.114 Sum_probs=37.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+|+.++|--|.+++......|.+++++..... ....-...++..|.+++.+..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVE--KCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEC
Confidence 45788888889999999888888998776654321 111122335567888876654
No 250
>PRK07035 short chain dehydrogenase; Provisional
Probab=38.08 E-value=3.1e+02 Score=24.95 Aligned_cols=82 Identities=12% Similarity=0.065 Sum_probs=47.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (382)
+..+|+.++|.-|.+++....+.|.+++++-.... ........+...|.++..+..+-.+.+ .++.+.+...+....
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~ 85 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLD--GCQAVADAIVAAGGKAEALACHIGEME-QIDALFAHIRERHGR 85 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEcCCCCHH-HHHHHHHHHHHHcCC
Confidence 45788888889999999999999998877764322 112223344556776655543322233 344444444333333
Q ss_pred ceEEe
Q 016830 257 THYIL 261 (382)
Q Consensus 257 ~~y~~ 261 (382)
-.+++
T Consensus 86 id~li 90 (252)
T PRK07035 86 LDILV 90 (252)
T ss_pred CCEEE
Confidence 33444
No 251
>PRK12828 short chain dehydrogenase; Provisional
Probab=37.99 E-value=2.9e+02 Score=24.59 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=38.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+++.++|--|.++|....+.|.+++++...... .......+...+.+++..+.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP--LSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh--HHHHHHHHhhcCceEEEeec
Confidence 457888888999999999888889997777654221 11223345566777777654
No 252
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=37.55 E-value=1.2e+02 Score=29.99 Aligned_cols=47 Identities=17% Similarity=0.049 Sum_probs=32.1
Q ss_pred EEEecCcchHHHHHHHHHHHcCCe-EEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~-~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|.-|.+++..|+.+|.. ++++-+. ..|.+.++.+|++-+.
T Consensus 187 ~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~------~~~~~~~~~~ga~~~i 234 (365)
T cd08277 187 TVAVFGLGAVGLSAIMGAKIAGASRIIGVDIN------EDKFEKAKEFGATDFI 234 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHHHHHcCCCcEe
Confidence 344446799999999999999995 4444332 2356667889986443
No 253
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=37.40 E-value=50 Score=33.60 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=27.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~ 210 (382)
+|-.-++|+.|+-++.+|+++|++++++=|..
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~ 34 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDA 34 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCC
Confidence 34455899999999999999999999999873
No 254
>PRK06198 short chain dehydrogenase; Provisional
Probab=37.05 E-value=3.3e+02 Score=24.89 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=42.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
+..+++.++|.-|..+|......|.+.++++.... +........++..|.++..+..+-.+ .+.+.++.+.
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~ 77 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA-EKGEAQAAELEALGAKAVFVQADLSD-VEDCRRVVAA 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH-HHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHH
Confidence 34788888889999999998899998444444322 11122333456778888665443222 2334444443
No 255
>PRK07774 short chain dehydrogenase; Provisional
Probab=37.02 E-value=3.2e+02 Score=24.75 Aligned_cols=56 Identities=23% Similarity=0.103 Sum_probs=36.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+++.++|--|.++|......|.+++++...... ...-...++..+.+++.+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEG--AERVAKQIVADGGTAIAVQV 62 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEc
Confidence 347888888999999999998999998877644221 11112334445666655443
No 256
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=36.78 E-value=1.2e+02 Score=30.26 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=34.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+..++...+|.-|.+++..|+.+|.+.+++.+. ..+...++.+|++.++
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s------~~~~~~~~~~G~~~~i 243 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAGANPVAVVSS------EEKAEYCRALGAEGVI 243 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCC------HHHHHHHHHcCCCEEE
Confidence 344554446999999999999999997665432 2355567889986544
No 257
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.69 E-value=1.4e+02 Score=27.99 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=33.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+.+++...+|..|.++...|+.+|.+++.+.... .+.+.++.+|++-+.
T Consensus 144 ~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~~ 192 (320)
T cd08243 144 DTLLIRGGTSSVGLAALKLAKALGATVTATTRSP------ERAALLKELGADEVV 192 (320)
T ss_pred CEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHhcCCcEEE
Confidence 3455555568999999999999999966555431 234456778986544
No 258
>PRK07102 short chain dehydrogenase; Provisional
Probab=36.58 E-value=3e+02 Score=25.00 Aligned_cols=55 Identities=13% Similarity=-0.012 Sum_probs=35.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHH-cCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~-~GAeVv~v~~ 234 (382)
+.+++.++|.-|.++|......|.+++++...... .......++. .+.++..+..
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~ 58 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVER--LERLADDLRARGAVAVSTHEL 58 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHH--HHHHHHHHHHhcCCeEEEEec
Confidence 47888888999999999988899998777654221 1122222222 3557766554
No 259
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=36.57 E-value=1.5e+02 Score=28.26 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=32.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v 232 (382)
++++ .++|..|.+++..|+.+|.+++...+. ..+.+.++.+|++.+..
T Consensus 168 ~vli-~g~g~vG~~~~~la~~~G~~V~~~~~s------~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 168 TVLV-IGLGGLGLNAVQIAKAMGAAVIAVDIK------EEKLELAKELGADEVLN 215 (338)
T ss_pred EEEE-ECCcHHHHHHHHHHHHcCCEEEEEcCC------HHHHHHHHHhCCCEEEc
Confidence 4555 457888999999999999995555433 12445567788865443
No 260
>PRK12831 putative oxidoreductase; Provisional
Probab=36.01 E-value=97 Score=32.23 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=37.7
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCc--HHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQD--MERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~--~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++||.|.-+|..+.++|.+++++..... .......+..++..|.+++.
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 466678999999999999999999998876421 11112234456677888765
No 261
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=35.92 E-value=1.5e+02 Score=28.41 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=31.4
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
.|+..++|.-|.+++..|+.+|++++++.+.. .+...++.+|++-
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~------~~~~~~~~~g~~~ 214 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQGAEVFAFTRSG------EHQELARELGADW 214 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEcCCh------HHHHHHHHhCCcE
Confidence 34445688899999999999999876665542 2344467788753
No 262
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=35.89 E-value=1.4e+02 Score=25.77 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=28.2
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~ 210 (382)
+++..++|+.|..++-.....|.++++++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 35678889999999999999999999999763
No 263
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=35.89 E-value=1.6e+02 Score=28.47 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=33.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
++.++...+|.-|++++..|+.+|.+++++... . +...++.+|++.+.
T Consensus 179 ~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~------~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 179 ETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA------A-KEEAVRALGADTVI 226 (350)
T ss_pred CEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc------h-hhHHHHhcCCeEEE
Confidence 345555556999999999999999996655422 1 44556789997543
No 264
>PRK09291 short chain dehydrogenase; Provisional
Probab=35.73 E-value=2.1e+02 Score=26.11 Aligned_cols=54 Identities=17% Similarity=0.066 Sum_probs=35.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
..+|+.++|.-|.+++......|.+++++...... ...-....+..|.++..+.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~ 57 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQ--VTALRAEAARRGLALRVEK 57 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCcceEEE
Confidence 47888999999999999999999998887754221 1111223445565554443
No 265
>PRK07063 short chain dehydrogenase; Provisional
Probab=35.63 E-value=3.5e+02 Score=24.80 Aligned_cols=83 Identities=16% Similarity=0.068 Sum_probs=44.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHH--cCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL--LGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~--~GAeVv~v~~~~~~~~da~~~a~~~~~~~~ 254 (382)
+..+++.++|--|.++|..-...|.+++++..... ....-...++. .+.++..+..+-.+. +.+..+.+...++.
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~ 84 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAA--LAERAAAAIARDVAGARVLAVPADVTDA-ASVAAAVAAAEEAF 84 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhccCCceEEEEEccCCCH-HHHHHHHHHHHHHh
Confidence 35788888888899999888889998777654321 11122233443 466665554332222 33444444433333
Q ss_pred CCceEEec
Q 016830 255 ETTHYILG 262 (382)
Q Consensus 255 ~~~~y~~~ 262 (382)
..-..++.
T Consensus 85 g~id~li~ 92 (260)
T PRK07063 85 GPLDVLVN 92 (260)
T ss_pred CCCcEEEE
Confidence 33334443
No 266
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=35.50 E-value=3.2e+02 Score=24.35 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=36.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+++.++|-.|..+|..-...|.+++++...... ........++..|++++.+..
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~ 55 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEE-GAEEVVEELKAYGVKALGVVC 55 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHHHHhcCCceEEEEe
Confidence 577888899999998888889987766543211 112233446677887766654
No 267
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=35.32 E-value=2.1e+02 Score=25.26 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=40.4
Q ss_pred HHHhCCCeEEEecCcchHHH-HHHHHHHHcCCeEEEEeCCC---cHHHHHHHHHHHHHcCCEEEE
Q 016830 171 AKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~-AlA~aA~~lGi~~~IvmP~~---~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+++.|.++.|++.-..|.++ +.|.-|..+|++++++-... +.+....-+..|+..+++|+.
T Consensus 109 L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a~~~~~~h~~al~~l~~~~~~v~~ 173 (179)
T cd01015 109 LTARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVGDRAPAPHEANLFDIDNKYGDVVS 173 (179)
T ss_pred HHHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeeccccCCCHHHHHHHHHHHHhhceeecc
Confidence 34578888888888888777 56666888999998887652 222223334555555666643
No 268
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=35.28 E-value=5.9e+02 Score=28.95 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCeEEEEe---CCC------cHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEE
Q 016830 190 VATATVCARFGLQCIVYM---GAQ------DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYI 260 (382)
Q Consensus 190 ~AlA~aA~~lGi~~~Ivm---P~~------~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~ 260 (382)
+..|..|.+++-+.+++. |+. ...+...+..+.+.+||+++.+..+ +..+++. ++.....-+..+
T Consensus 266 R~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~--dv~~~i~----~ya~~~~~TkiV 339 (890)
T COG2205 266 RRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGG--DVAKAIA----RYAREHNATKIV 339 (890)
T ss_pred HHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCC--cHHHHHH----HHHHHcCCeeEE
Confidence 444555677888877653 441 2223455788899999999999753 3444333 233333445566
Q ss_pred ecc
Q 016830 261 LGS 263 (382)
Q Consensus 261 ~~s 263 (382)
+++
T Consensus 340 iG~ 342 (890)
T COG2205 340 IGR 342 (890)
T ss_pred eCC
Confidence 654
No 269
>PRK12827 short chain dehydrogenase; Provisional
Probab=35.25 E-value=3.4e+02 Score=24.44 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=38.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC--CcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA--QDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~--~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
++.+++.++|--|.++|......|.+++++... ...+....-...++..|.+++.+..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAF 66 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEc
Confidence 357888889999999999988899987775532 1212122223445566777766654
No 270
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=35.16 E-value=1.6e+02 Score=25.84 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=36.7
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
.|+..++|+-|.+.+.++..+|.+.+++= ... .+....+.+++..+.++
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d--~~~----~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPD--ERP----ERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEE--SSH----HHHHHHHHTTTEESEET
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEecc--CCH----HHHHhhhcccCceEEEc
Confidence 46667899999999999999999866653 332 35556788999887775
No 271
>PRK12747 short chain dehydrogenase; Provisional
Probab=35.12 E-value=3.5e+02 Score=24.66 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=35.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
..+|+.++|--|.++|..-...|.+++++..... +........++..|.+++.+.
T Consensus 6 ~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 6 VALVTGASRGIGRAIAKRLANDGALVAIHYGNRK-EEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHHHhcCCceEEEe
Confidence 5788888888999999998899998777542221 111222344555676665554
No 272
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=35.04 E-value=1e+02 Score=33.09 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhhhcCCCCCEEEccccch--------hhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCe
Q 016830 107 DFQEELSGILRDYVGRETPLYFAERLTE--------HYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTR 178 (382)
Q Consensus 107 ~f~~~~~~~l~~~ig~~TPL~~~~~Ls~--------~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~ 178 (382)
+|.+++-+.++... |+=++.+++++. ++ ..++-+=.+|.|-||+.=.-+.++.+....+.=++.
T Consensus 227 ~f~defv~av~~~~--P~~~Iq~EDf~~~naf~iL~ky------r~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~ 298 (559)
T PTZ00317 227 ELLDEFMEAVSSRW--PNAVVQFEDFSNNHCFDLLERY------QNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQ 298 (559)
T ss_pred HHHHHHHHHHHHhC--CCeEEehhhcCCccHHHHHHHh------ccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhc
Confidence 45667777777766 556888876643 34 234555677887788755555555554432222344
Q ss_pred EEEecCcchHHHHHHHHHH----HcCC
Q 016830 179 IIAETGAGQHGVATATVCA----RFGL 201 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~----~lGi 201 (382)
.|+..++|..|.++|-... +.|+
T Consensus 299 riv~~GAGsAgiGia~ll~~~m~~~Gl 325 (559)
T PTZ00317 299 RIVFFGAGSAAIGVANNIADLAAEYGV 325 (559)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence 6778999999999987755 3576
No 273
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=35.03 E-value=2.5e+02 Score=27.68 Aligned_cols=48 Identities=25% Similarity=0.211 Sum_probs=33.4
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|.-|.+++..|+.+|.+.++..... ..|.+.++.+|++.+.
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~-----~~k~~~~~~~g~~~~i 236 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIV-----DSRLELAKELGATHVI 236 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCcEEe
Confidence 34444678999999999999999755554332 2356677889986544
No 274
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=34.81 E-value=1.3e+02 Score=30.16 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=34.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
...++...+|.-|.+++..|+.+|.+.+++.+. ..+...++.+|+..+.
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~------~~~~~~~~~~g~~~~v 239 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAGGGNPVAVVSS------PEKAEYCRELGAEAVI 239 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCC------HHHHHHHHHcCCCEEe
Confidence 345555556999999999999999997655432 1244567779987654
No 275
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=34.80 E-value=3.6e+02 Score=24.68 Aligned_cols=33 Identities=15% Similarity=0.023 Sum_probs=27.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+|+.++|--|.++|..-...|.+++++...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 357888888899999999988899997777543
No 276
>PRK06500 short chain dehydrogenase; Provisional
Probab=34.65 E-value=3.5e+02 Score=24.44 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=35.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+|+.++|.-|.++|......|.+++++..... .. ....+.+|.+++.+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~----~~-~~~~~~~~~~~~~~~~ 59 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPA----SL-EAARAELGESALVIRA 59 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHH----HH-HHHHHHhCCceEEEEe
Confidence 35788888999999999999999998766543211 11 1123445777765543
No 277
>PRK07814 short chain dehydrogenase; Provisional
Probab=34.52 E-value=3.8e+02 Score=24.80 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=41.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
+..+++.++|--|.++|......|.+++++..... ........++..|..+..+..+-.+ .+....+.+..
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~ 81 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES--QLDEVAEQIRAAGRRAHVVAADLAH-PEATAGLAGQA 81 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHH
Confidence 45788888888999999888889998877764321 1112233344556666554432222 33344444443
No 278
>PRK07201 short chain dehydrogenase; Provisional
Probab=34.40 E-value=3.2e+02 Score=29.25 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=47.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (382)
+..+++.++|.-|.++|..-...|.+++++....+ ........++..|.+++.+..+-.+ .+.++++.+...+....
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~ 448 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGE--ALDELVAEIRAKGGTAHAYTCDLTD-SAAVDHTVKDILAEHGH 448 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence 34778888889999999988888998877765422 1122233455567777665433222 23344455544443333
Q ss_pred ceEEe
Q 016830 257 THYIL 261 (382)
Q Consensus 257 ~~y~~ 261 (382)
-..++
T Consensus 449 id~li 453 (657)
T PRK07201 449 VDYLV 453 (657)
T ss_pred CCEEE
Confidence 33444
No 279
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=34.39 E-value=1.3e+02 Score=29.38 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=33.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..|+..++|.-|.+++..|+.+|.+++++. . + ..+.+.++.+|++.+.
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~-~-~----~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMGAAVVAID-I-D----PEKLEMMKGFGADLTL 215 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEc-C-C----HHHHHHHHHhCCceEe
Confidence 345556669999999999999999754432 2 2 2355667889997654
No 280
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=34.38 E-value=1.5e+02 Score=28.78 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=32.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..++ .+.|..|.+++..|+.+|++++++.+.. .+...++.+|++-++
T Consensus 172 ~vlV-~g~g~vG~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~vi 218 (337)
T cd05283 172 RVGV-VGIGGLGHLAVKFAKALGAEVTAFSRSP------SKKEDALKLGADEFI 218 (337)
T ss_pred EEEE-ECCcHHHHHHHHHHHHcCCeEEEEcCCH------HHHHHHHHcCCcEEe
Confidence 3455 5578999999999999999766554432 244456778886554
No 281
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=34.27 E-value=1.7e+02 Score=28.86 Aligned_cols=53 Identities=11% Similarity=-0.028 Sum_probs=36.0
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHH-HHHHcCCEEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVF-RMRLLGAEVRAV 232 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~-~~~~~GAeVv~v 232 (382)
+.+..-.+|...+++.+++++|++++++.|+.-.. +..-++ ..+..|.++...
T Consensus 155 i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~g~~~~~~ 208 (304)
T PRK00779 155 VAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEP-DPEIVEKIAKETGASIEVT 208 (304)
T ss_pred EEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCC-CHHHHHHHHHHcCCeEEEE
Confidence 44444446899999999999999999999985211 111112 246678888765
No 282
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=34.12 E-value=3.5e+02 Score=24.27 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=41.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
..+|+.++|.-|..+|......|.+++++.-.... +.......+...+.++..+..+-.+ .+.+..+.+.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~ 73 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEE-RAEAWLQEQGALGFDFRVVEGDVSS-FESCKAAVAKVE 73 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHH
Confidence 36788888999999999988999988776642221 1111223344556666655433222 233444444433
No 283
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=34.00 E-value=1.7e+02 Score=27.61 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=33.5
Q ss_pred CCeEEEecCcc---hHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCC
Q 016830 176 KTRIIAETGAG---QHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (382)
Q Consensus 176 ~~~~Vv~aSsG---NhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GA 227 (382)
.+.+|.+++.| -+-+|||.||++-|=+.+.++|+... ...-...|..+|.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~--~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQS--LSEYKKALGEAGL 94 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhh--HHHHHHHHhhccc
Confidence 34444444555 37899999999999999999998432 1223445666664
No 284
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=33.99 E-value=1.3e+02 Score=29.28 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=34.0
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|.-|.+++..|+.+|.+.++++... ..|.+.++.+|++.+.
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALGAKSVTAIDIN-----SEKLALAKSLGAMQTF 210 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCceEe
Confidence 34444789999999999999999865555332 2355567889997544
No 285
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=33.99 E-value=1.9e+02 Score=31.08 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=34.0
Q ss_pred CeEEEecCcch-HHHHHHHH--HHHcCCeEEEEeCCCc-HHHHHHHHHHHHHcCCEEE
Q 016830 177 TRIIAETGAGQ-HGVATATV--CARFGLQCIVYMGAQD-MERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 177 ~~~Vv~aSsGN-hG~AlA~a--A~~lGi~~~IvmP~~~-~~~~~~kv~~~~~~GAeVv 230 (382)
.+++|.++.|| -|=+++.| ....|++++|++|... ......+..+++.+|..+.
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~~ 193 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPFV 193 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCee
Confidence 35777788885 55555555 4447999999997632 1112224566777886653
No 286
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=33.83 E-value=1.5e+02 Score=31.58 Aligned_cols=54 Identities=26% Similarity=0.368 Sum_probs=39.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC---------------cHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQ---------------DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~---------------~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+.|+.-++|-.|.+.|..++++|.+++|+=... ..+....+++.++.+|++++.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 456778999999999999999999987763211 111234466778899999765
No 287
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism]
Probab=33.64 E-value=36 Score=33.29 Aligned_cols=91 Identities=30% Similarity=0.505 Sum_probs=56.0
Q ss_pred cCCCCCCCCCCCCCC----CccCCCCcccccchh-----------hhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCC
Q 016830 60 KESDPAPWQRPDVFG----RFGRFGGKFVPETLM-----------YALSELESALHKLADDRDFQEELSGILRDYVGRET 124 (382)
Q Consensus 60 ~~~~~~~~~~~~~~~----~~~~~GG~yvP~~l~-----------~~l~~l~~a~~~~~~~~~f~~~~~~~l~~~ig~~T 124 (382)
+......|-+||+.. -|-.-.|..+|-... .++++|+++..+ +.+ -
T Consensus 156 rr~g~l~WlRpdsktqVTvey~~~~Ga~vP~rVhtvviS~QH~~~is~~~lr~~l~e------------~vi-------k 216 (383)
T KOG1506|consen 156 RRNGTLPWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQHSEDITLDDLRAELKE------------KVI-------K 216 (383)
T ss_pred cccCcccccccCCcceEEEEEecCCCceeeeEEEEEEEecccCccccHHHHHHHHHH------------hhh-------h
Confidence 345556778999885 345677888887652 677888776552 122 3
Q ss_pred CEEEccccchhhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeEEEecCcc
Q 016830 125 PLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAG 186 (382)
Q Consensus 125 PL~~~~~Ls~~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsG 186 (382)
|.++..-|. ...|| .+||+|.|-+-|-.+-+- -.|++ +|+.+-+|
T Consensus 217 ~viPa~~lD---------e~Tiy----hl~PsGrFviGGP~GDAG---lTGRK-IIvDtYGG 261 (383)
T KOG1506|consen 217 PVIPAKYLD---------EKTIY----HLNPSGRFVIGGPQGDAG---LTGRK-IIVDTYGG 261 (383)
T ss_pred hcCcHhhcC---------ccceE----EecCCccEEecCCCcccc---cccce-EEEeccCc
Confidence 444444333 35678 789999998877544332 23554 55555444
No 288
>CHL00194 ycf39 Ycf39; Provisional
Probab=33.36 E-value=1.8e+02 Score=28.04 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=27.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+++|+.++|.-|..++......|.+++++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 46788999999999999988899998888754
No 289
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=33.32 E-value=1.7e+02 Score=27.94 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=32.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
++++. ++|.-|++++..|+.+|++++++.+.. .+.+.++.+|++.+.
T Consensus 165 ~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~~~ 211 (330)
T cd08245 165 RVAVL-GIGGLGHLAVQYARAMGFETVAITRSP------DKRELARKLGADEVV 211 (330)
T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHhCCcEEe
Confidence 34444 677799999999999999876665432 244556778876554
No 290
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=33.31 E-value=88 Score=31.10 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=41.7
Q ss_pred HHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 016830 172 KRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT 238 (382)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~ 238 (382)
+..|.+. ++..+||..|.-+|+.+-.++-.-.|++|.-+. ..-...+...|++++.++.+..+
T Consensus 36 ~~~g~~~-~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~---~~~~~ai~~~G~~pv~~Di~~~~ 98 (363)
T PF01041_consen 36 EYFGVKY-AVAVSSGTSALHLALRALGLGPGDEVIVPAYTF---PATASAILWAGAEPVFVDIDPET 98 (363)
T ss_dssp HHHTSSE-EEEESSHHHHHHHHHHHTTGGTTSEEEEESSS----THHHHHHHHTT-EEEEE-BETTT
T ss_pred HHhCCCe-EEEeCChhHHHHHHHHhcCCCcCceEecCCCcc---hHHHHHHHHhccEEEEEeccCCc
Confidence 3446664 556788999999988884433336788887442 24556799999999999875333
No 291
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=33.20 E-value=3.1e+02 Score=27.24 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=36.4
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCc-------HHHHHHHHHHHHHcCCEEEE
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD-------MERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~-------~~~~~~kv~~~~~~GAeVv~ 231 (382)
|+.-++|..|.-+|...+..|.+++++.+... .+....-.+.++..|.+++.
T Consensus 144 vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~ 202 (377)
T PRK04965 144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLL 202 (377)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEE
Confidence 44567899999999999999999999986532 11112223556777877654
No 292
>PRK06138 short chain dehydrogenase; Provisional
Probab=33.16 E-value=3.7e+02 Score=24.31 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=41.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
+..+++.++|--|.++|..-...|.+++++.-.... .......++ .|.++..+..+-.+. +.++++.+...
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~-~~~~~~~~~~D~~~~-~~~~~~~~~i~ 76 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEA--AERVAAAIA-AGGRAFARQGDVGSA-EAVEALVDFVA 76 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHH--HHHHHHHHh-cCCeEEEEEcCCCCH-HHHHHHHHHHH
Confidence 357888888999999999888889887666543221 122223333 577776665432222 33444444433
No 293
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=33.02 E-value=3.9e+02 Score=24.57 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=25.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+..+|+.++|--|.++|......|.+++++-.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r 38 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLER 38 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 35788888888999999998899999766643
No 294
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=32.41 E-value=2.3e+02 Score=29.41 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=46.4
Q ss_pred CCeEEEecCcchHHHHHHHHHHHcCCe-EEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHH-HHHHHHHHHHHHc
Q 016830 176 KTRIIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLK-DATSEAIRDWVTN 253 (382)
Q Consensus 176 ~~~~Vv~aSsGNhG~AlA~aA~~lGi~-~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~-da~~~a~~~~~~~ 253 (382)
.+.+|+ +++.++|.-+ .++.+=-+ -+|++-+-+ -..-+..++.+|++++.|+.+.+..+ |+.+++.+.+
T Consensus 155 ~~~Iii-T~G~q~al~l--~~~~l~~pGd~v~vE~Pt---Y~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~--- 225 (459)
T COG1167 155 PEQIVI-TSGAQQALDL--LLRLLLDPGDTVLVEDPT---YPGALQALEALGARVIPVPVDEDGIDPEALEEALAQW--- 225 (459)
T ss_pred cCeEEE-eCCHHHHHHH--HHHHhCCCCCEEEEcCCC---cHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhc---
Confidence 445554 4444666553 44443223 455554322 12345679999999999987544433 3344443322
Q ss_pred cCCceEEecccCCCCCc
Q 016830 254 VETTHYILGSVAGPHPY 270 (382)
Q Consensus 254 ~~~~~y~~~s~~n~~p~ 270 (382)
..+-.|++.++.||...
T Consensus 226 ~~k~~y~~P~~qNPtG~ 242 (459)
T COG1167 226 KPKAVYVTPTFQNPTGV 242 (459)
T ss_pred CCcEEEECCCCCCCCCC
Confidence 23456777777666543
No 295
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.40 E-value=1.7e+02 Score=30.22 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=37.0
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeC------CCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMG------AQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP------~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++|..|.-+|...+.+|.+++++.. ..+.+....-.+.++..|.+|+.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~ 232 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILT 232 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 345578899999999999999999998753 32333233334556777877664
No 296
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.09 E-value=5.5e+02 Score=26.06 Aligned_cols=55 Identities=20% Similarity=0.092 Sum_probs=37.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+|+.++|.-|.++|....+.|.+++++-.....+ ........++++++.++.
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~---~l~~~~~~~~~~~~~~Dv 265 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGE---ALAAVANRVGGTALALDI 265 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHH---HHHHHHHHcCCeEEEEeC
Confidence 3577888888999999999889999987765432211 112234456777777765
No 297
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=32.08 E-value=1.4e+02 Score=28.05 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=34.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHc-CCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL-GAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~-GAeVv~ 231 (382)
.|+.-++|+.|.-+|...+..+.+++++.+.......+.-...++.. |.+++.
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~ 196 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFLW 196 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEEe
Confidence 45567899999999999998999999988653211112223345544 655543
No 298
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=31.97 E-value=3.8e+02 Score=24.07 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=40.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~ 250 (382)
..+++.++|.-|+++|..-.+.|.++++...... +............+.++..+..+-.+ .+.+.++.+..
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~ 74 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTD-TEECAEALAEI 74 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCC-HHHHHHHHHHH
Confidence 4678888889999999888888988877765432 11111112223345566555433222 23344444443
No 299
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=31.95 E-value=3.2e+02 Score=25.77 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=33.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
..+++...+|..|.+++..|+.+|.+++.+.+.. .+.+.++.+|++-+
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~------~~~~~~~~~g~~~~ 191 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGP------AKTALVRALGADVA 191 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHcCCCEE
Confidence 4466666689999999999999999965554331 13344677888543
No 300
>PRK06701 short chain dehydrogenase; Provisional
Probab=31.90 E-value=4.5e+02 Score=24.96 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=44.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~ 249 (382)
+..+|+.++|.-|.++|....+.|.+++++....... .......++..|.+++.+..+-.+ .+.++++.+.
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~ 117 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHED-ANETKQRVEKEGVKCLLIPGDVSD-EAFCKDAVEE 117 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHH
Confidence 3578888888999999999888999988776542211 122334556678787665543222 3334444443
No 301
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=31.87 E-value=1.3e+02 Score=28.56 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=34.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+++++...+|.-|.+++..|+.+|.++++.... ..+.+.++.+|++-+.
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~v~ 196 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTGK------ADAADYLKKLGAKEVI 196 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC------HHHHHHHHHcCCCEEE
Confidence 345565556999999999999999986555433 1245557889985443
No 302
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=31.80 E-value=2.3e+02 Score=26.71 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=34.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+.+++...+|.-|.+++..|+.+|.+++++.+.. .+.+.++.+|++-+.
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~~ 196 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTGKE------EQADYLKSLGASEVL 196 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHhcCCcEEE
Confidence 3556655569999999999999999955554331 245556789986443
No 303
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=31.70 E-value=1.7e+02 Score=28.30 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=31.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAe 228 (382)
+.++. ++|.-|.++...|+.+|++++++.... .+.+.++.+|++
T Consensus 168 ~vlV~-g~g~vg~~~~~~a~~~G~~vi~~~~~~------~~~~~~~~~g~~ 211 (345)
T cd08260 168 WVAVH-GCGGVGLSAVMIASALGARVIAVDIDD------DKLELARELGAV 211 (345)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHhCCC
Confidence 34444 478999999999999999877665442 244556778984
No 304
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=31.52 E-value=1.3e+02 Score=32.66 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhcCCCCCEEEccccch--------hhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCeE
Q 016830 108 FQEELSGILRDYVGRETPLYFAERLTE--------HYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRI 179 (382)
Q Consensus 108 f~~~~~~~l~~~ig~~TPL~~~~~Ls~--------~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~ 179 (382)
|.+++-+.++...| |.=++.+++++. ++ ..++-+=.+|.|-||+.=.=+.++.+....+.=.+..
T Consensus 251 ~~defv~av~~~fG-p~~~I~~EDf~~~~af~iL~ry------r~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~r 323 (581)
T PLN03129 251 LVDEFMEAVKQRWG-PKVLVQFEDFANKNAFRLLQRY------RTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQR 323 (581)
T ss_pred hHHHHHHHHHHHhC-CccEEehhhcCCccHHHHHHHh------ccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhce
Confidence 45666666666554 445777776543 33 2455556777777876544444444443322222345
Q ss_pred EEecCcchHHHHHHHHHHH
Q 016830 180 IAETGAGQHGVATATVCAR 198 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~ 198 (382)
|+..++|..|.++|-....
T Consensus 324 iv~~GAGsAgigia~ll~~ 342 (581)
T PLN03129 324 ILFAGAGEAGTGIAELIAL 342 (581)
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 7779999999999876554
No 305
>PLN02827 Alcohol dehydrogenase-like
Probab=31.50 E-value=2e+02 Score=28.77 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=34.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
...|+..++|--|.+++..|+.+|.+.++.....+ .|.+.++.+|++-+.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~-----~~~~~a~~lGa~~~i 243 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP-----EKAEKAKTFGVTDFI 243 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH-----HHHHHHHHcCCcEEE
Confidence 33455556788999998899999987555553322 355667889997543
No 306
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=31.38 E-value=4.1e+02 Score=24.28 Aligned_cols=32 Identities=16% Similarity=-0.009 Sum_probs=26.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
..+|+.++|.-|.++|..-...|.+++++-..
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 47888888999999999988889988777543
No 307
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=31.35 E-value=3.1e+02 Score=27.43 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=41.6
Q ss_pred CCCCcccchHHHHHHHHHH---hCCCeE-EEecCcchHHHHHHHHHH---HcCCeEEEEeCC-CcHHHHHHHHHHHHHcC
Q 016830 155 HTGAHKINNAVGQALLAKR---LGKTRI-IAETGAGQHGVATATVCA---RFGLQCIVYMGA-QDMERQALNVFRMRLLG 226 (382)
Q Consensus 155 pTGSfK~Rga~~~l~~a~~---~g~~~~-Vv~aSsGNhG~AlA~aA~---~lGi~~~IvmP~-~~~~~~~~kv~~~~~~G 226 (382)
+.|....|-++........ ...+++ |+.++++++|..++..+- .-|= .|++|+ ..+ .=....+.+|
T Consensus 68 ~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd--~Vlv~~P~y~----~~~~~~~~~g 141 (396)
T PRK09257 68 IEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDA--KVWVSDPTWP----NHRAIFEAAG 141 (396)
T ss_pred CCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCC--eEEECCCCcc----cHHHHHHHcC
Confidence 3577777776555432111 123343 355667788888876322 2343 455554 221 1234578899
Q ss_pred CEEEEEcC
Q 016830 227 AEVRAVHS 234 (382)
Q Consensus 227 AeVv~v~~ 234 (382)
++++.++.
T Consensus 142 ~~~v~v~~ 149 (396)
T PRK09257 142 LEVKTYPY 149 (396)
T ss_pred CcEEEEec
Confidence 99998863
No 308
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.31 E-value=4e+02 Score=24.18 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=44.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
..+++.++|.-|.++|..-...|.+++++....... .......++..+.++..+..+-.+ .+....+.+.+.+
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 76 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE-LAATQQELRALGVEVIFFPADVAD-LSAHEAMLDAAQA 76 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH-HHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHH
Confidence 478888889999999998888899887776432211 122344455667777666543222 2334444444433
No 309
>PRK07576 short chain dehydrogenase; Provisional
Probab=30.76 E-value=4.4e+02 Score=24.44 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=42.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
+..+|+.++|.-|.++|......|.+++++....+ ........+...+.+++.+..+-.+ .+.+..+.+...
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~ 81 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQE--KVDAAVAQLQQAGPEGLGVSADVRD-YAAVEAAFAQIA 81 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHH
Confidence 45788888889999999988889999777754322 1122223455567666555432222 233444444433
No 310
>PRK13529 malate dehydrogenase; Provisional
Probab=30.76 E-value=1.3e+02 Score=32.52 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=55.8
Q ss_pred hHHHHHHHHHhhhcCCCCCEEEccccch--------hhcCCCCCCCeEEEeecCCCCCCCcccchHHHHHHHHHHhCCCe
Q 016830 107 DFQEELSGILRDYVGRETPLYFAERLTE--------HYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTR 178 (382)
Q Consensus 107 ~f~~~~~~~l~~~ig~~TPL~~~~~Ls~--------~l~~~~~~g~~IylK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~ 178 (382)
+|.+++-+.++... |+=++.+++++. ++ ..++-+=.+|.|-||+.=.=+.++.+....+.=.+.
T Consensus 225 ~f~defv~av~~~~--P~~~I~~EDf~~~~af~iL~ry------r~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~ 296 (563)
T PRK13529 225 EFVDEFVQAVKRRF--PNALLQFEDFAQKNARRILERY------RDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQ 296 (563)
T ss_pred HHHHHHHHHHHHhC--CCeEEehhhcCCchHHHHHHHh------ccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhc
Confidence 45666666676665 555888876643 34 235556678888888765555555554432222234
Q ss_pred EEEecCcchHHHHHHHHHHH----cCC
Q 016830 179 IIAETGAGQHGVATATVCAR----FGL 201 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~----lGi 201 (382)
.|+..++|..|.++|-.... .|+
T Consensus 297 riv~~GAGsAgiGia~ll~~~~~~~Gl 323 (563)
T PRK13529 297 RIVFLGAGSAGCGIADQIVAAMVREGL 323 (563)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence 57779999999999887654 476
No 311
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=30.63 E-value=3.1e+02 Score=26.21 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=32.7
Q ss_pred eEEEecCcchHHHHHHHHHHH-cCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEE
Q 016830 178 RIIAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~-lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v 232 (382)
..++. ++|--|.+++..|+. +|.+++.+... ..+.+.++.+|++.+.-
T Consensus 165 ~vlV~-g~g~vG~~~~~la~~~~g~~v~~~~~~------~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 165 WIAIY-GAGGLGNLALQYAKNVFNAKVIAVDIN------DDKLALAKEVGADLTIN 213 (338)
T ss_pred EEEEE-CCcHHHHHHHHHHHHhCCCeEEEEeCC------hHHHHHHHHcCCcEEec
Confidence 34444 478888888888887 59986655443 23566678899876543
No 312
>PRK06924 short chain dehydrogenase; Provisional
Probab=30.46 E-value=3.5e+02 Score=24.58 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=26.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
..+++.++|.-|.++|......|.+++++-..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRT 34 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCC
Confidence 47888888999999999988889988776543
No 313
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=30.33 E-value=2.9e+02 Score=27.96 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=36.2
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCcH-------HHHHHHHHHHHHcCCEEEE
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDM-------ERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~-------~~~~~kv~~~~~~GAeVv~ 231 (382)
|+.-++|..|..+|...++.|.+++++.+.... +....-.+.++..|.+++.
T Consensus 140 vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 198 (427)
T TIGR03385 140 VVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRL 198 (427)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEe
Confidence 444589999999999999999999998864321 1122234556777877653
No 314
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=30.11 E-value=3.2e+02 Score=24.82 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=43.2
Q ss_pred HHhCCCeEEEecCcchHHH-HHHHHHHHcCCeEEEEeCCCc-----HHHHHHHHHHHHHcCCEEEE
Q 016830 172 KRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQD-----MERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhG~-AlA~aA~~lGi~~~IvmP~~~-----~~~~~~kv~~~~~~GAeVv~ 231 (382)
++.+.++.|++.-..|.++ ++|..|..+|++++|+-...+ ++.....+..|+..|++|+.
T Consensus 138 ~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t 203 (212)
T PRK11609 138 REHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYT 203 (212)
T ss_pred HHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEE
Confidence 4567788888877788776 556668889999999887532 22223467778888998874
No 315
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=30.00 E-value=4.2e+02 Score=23.98 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=27.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+++..+|.-|.++|......|.+++++...
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 457888888899999999988899998887643
No 316
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=29.93 E-value=5.5e+02 Score=25.28 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhh-cC-CCcEEEEEeC
Q 016830 282 GKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-ND-KDVRLIGVEA 330 (382)
Q Consensus 282 g~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~-~~-~~vrViGVep 330 (382)
+....++++++. +++|.|+++ +...+.|+..+++ .+ .++.|+|++.
T Consensus 196 a~~~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 196 SLQTAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred HHHHHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeCC
Confidence 355666666665 479999987 3334446777776 22 2789999874
No 317
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=29.92 E-value=3e+02 Score=25.77 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=32.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCe-EEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~-~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+..++. ++|-.|.+++..|+.+|++ ++++... . .+...++.+|++-+.
T Consensus 131 ~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~~~~-~-----~~~~~~~~~g~~~~~ 179 (312)
T cd08269 131 KTVAVI-GAGFIGLLFLQLAAAAGARRVIAIDRR-P-----ARLALARELGATEVV 179 (312)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC-H-----HHHHHHHHhCCceEe
Confidence 345555 5788999999999999999 5544322 1 244467888985443
No 318
>PRK10490 sensor protein KdpD; Provisional
Probab=29.77 E-value=6.9e+02 Score=28.42 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=57.3
Q ss_pred eEEEecCcchHH----HHHHHHHHHcCCeEEEEeCCC------cH-H--HHHHHHHHHHHcCCEEEEEcCCCCCHHHHHH
Q 016830 178 RIIAETGAGQHG----VATATVCARFGLQCIVYMGAQ------DM-E--RQALNVFRMRLLGAEVRAVHSGTATLKDATS 244 (382)
Q Consensus 178 ~~Vv~aSsGNhG----~AlA~aA~~lGi~~~IvmP~~------~~-~--~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~ 244 (382)
+++|+-+++-++ +.-+-.|.+++-+.+++.=+. +. + +...++.+.+.+||+++.+.. ++..+++.
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~--~dva~~i~ 329 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSD--PAEEKAVL 329 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeC--CCHHHHHH
Confidence 455555555343 333445667887777555221 11 1 122355678889999988865 33444333
Q ss_pred HHHHHHHHccCCceEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCC
Q 016830 245 EAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVG 305 (382)
Q Consensus 245 ~a~~~~~~~~~~~~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG 305 (382)
+ +.....-+..++|+... ..+ . ..+ .+.+++.+.. +.+|..|++..
T Consensus 330 ~----~A~~~~vt~IViG~s~~-~~~---~--~~~----s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 330 R----YAREHNLGKIIIGRRAS-RRW---W--RRE----SFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred H----HHHHhCCCEEEECCCCC-CCC---c--cCC----CHHHHHHHhC-CCCCEEEEeCC
Confidence 3 23333445667765432 111 0 111 2334455544 36888888643
No 319
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=29.74 E-value=4e+02 Score=25.44 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=32.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAe 228 (382)
.+++ .++|..|.+++..|+.+|++++++.-..+ ..+.+.++.+|++
T Consensus 167 ~vlI-~g~g~~g~~~~~la~~~G~~v~~~~~~~~----~~~~~~~~~~g~~ 212 (306)
T cd08258 167 TVVV-FGPGPIGLLAAQVAKLQGATVVVVGTEKD----EVRLDVAKELGAD 212 (306)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCEEEEECCCCC----HHHHHHHHHhCCc
Confidence 4555 45789999999999999999544422222 2355678889985
No 320
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=29.66 E-value=2.7e+02 Score=25.33 Aligned_cols=61 Identities=20% Similarity=0.109 Sum_probs=41.4
Q ss_pred HHHhCCCeEEEecCcchHHHH-HHHHHHHcCCeEEEEeCCC---cHHHHHHHHHHHHHcCCEEEE
Q 016830 171 AKRLGKTRIIAETGAGQHGVA-TATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhG~A-lA~aA~~lGi~~~IvmP~~---~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+++.|.+..|++.-..|.++- .|.-|..+|++++|+-... +.+....-+..|+..+++|+.
T Consensus 137 Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~Da~as~~~~~h~~al~~l~~~~a~v~~ 201 (203)
T cd01013 137 LKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVADAIADFSLEEHRMALKYAATRCAMVVS 201 (203)
T ss_pred HHHcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEeccccCCCCHHHHHHHHHHHHhheeEeee
Confidence 345677888888777787664 4555888999988877542 223344456667777777764
No 321
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=29.64 E-value=1.9e+02 Score=31.45 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=40.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC---------------cHHHHHHHHHHHHHcCCEEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQ---------------DMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~---------------~~~~~~~kv~~~~~~GAeVv~v 232 (382)
+.|+.-++|-.|.+.|+..++.|.+++||=... +.+.....++.++.+|.+++.-
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 346668899999999999999999998884332 1111223567789999998753
No 322
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=29.52 E-value=61 Score=33.24 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=22.8
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
|+..++|-.|.+.|.+|++.|.++.++=+.
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~ 31 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKG 31 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 455789999999999999999999998765
No 323
>PRK07825 short chain dehydrogenase; Provisional
Probab=29.47 E-value=4.6e+02 Score=24.26 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=26.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+..+|+.++|.-|.++|......|.+++++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r 37 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDL 37 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 35788888899999999988888999776654
No 324
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.44 E-value=2e+02 Score=29.69 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=36.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEe------CCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYM------GAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~Ivm------P~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++|..|.-+|...+++|.+++++- |..+.+....-.+.++..|.+++.
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~ 234 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKL 234 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 35557899999999999999999999874 322333233344567777777653
No 325
>PRK06180 short chain dehydrogenase; Provisional
Probab=29.35 E-value=4.7e+02 Score=24.37 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=27.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+|+.++|.-|.+++......|.+++++...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 357888889999999999988899997776643
No 326
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.32 E-value=2.2e+02 Score=29.49 Aligned_cols=50 Identities=30% Similarity=0.395 Sum_probs=34.0
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
|+.-++|..|+++|.+.+..|.+++++-.... +........++..|.+++
T Consensus 19 v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 19 VVVAGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGATVR 68 (480)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCCEEE
Confidence 55568899999999999999999887754321 112223345777776654
No 327
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=29.26 E-value=6.5e+02 Score=25.89 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=37.7
Q ss_pred eEEEecCcchHHHHHHHHHHHc--CCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARF--GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~l--Gi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
++.+-.|+|+-|....-+.+++ .++++.+.-....+ .-.++.+.++.+.+.+..
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~---~l~~q~~~f~p~~v~i~~ 58 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVE---LLAEQAREFRPKYVVVAD 58 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHH---HHHHHHHHhCCCEEEEcC
Confidence 4566688999998877776665 67777766444432 344578999999888753
No 328
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=29.09 E-value=1.9e+02 Score=28.07 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=33.4
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+..++|.-|.+++..|+.+|...++.+...+ .+.+..+.+|++.+.
T Consensus 169 ~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~-----~~~~~~~~~g~~~~v 216 (351)
T cd08285 169 TVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRP-----NRVELAKEYGATDIV 216 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHcCCceEe
Confidence 344446789999999999999997555554322 355667889986443
No 329
>PLN02342 ornithine carbamoyltransferase
Probab=28.96 E-value=2.4e+02 Score=28.47 Aligned_cols=45 Identities=11% Similarity=0.008 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCC-EEEEE
Q 016830 187 QHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA-EVRAV 232 (382)
Q Consensus 187 NhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GA-eVv~v 232 (382)
|...+++.+++++|++++++-|+.-.. ...-++..+..|. ++...
T Consensus 205 nva~Sli~~~~~~G~~v~~~~P~~~~~-~~~~~~~a~~~g~~~~~~~ 250 (348)
T PLN02342 205 NIVHSWLLLAAVLPFHFVCACPKGYEP-DAKTVEKARAAGISKIEIT 250 (348)
T ss_pred hhHHHHHHHHHHcCCEEEEECCccccc-CHHHHHHHHHhCCCcEEEE
Confidence 799999999999999999999985311 1223344555664 66554
No 330
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=28.71 E-value=5.3e+02 Score=24.74 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=24.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+..+|+.++|--|.++|..-...|.+++++..
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 35788887888888888888888988777654
No 331
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.68 E-value=4.7e+02 Score=24.10 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=23.5
Q ss_pred eEEEecCc--chHHHHHHHHHHHcCCeEEEEeC
Q 016830 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 178 ~~Vv~aSs--GNhG~AlA~aA~~lGi~~~IvmP 208 (382)
..+++.++ +.-|+++|..-.+.|.++++...
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 45666665 57899999998889999777643
No 332
>PRK05855 short chain dehydrogenase; Validated
Probab=28.54 E-value=6e+02 Score=26.23 Aligned_cols=72 Identities=17% Similarity=0.067 Sum_probs=43.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
...+|+.++|--|.++|..-...|.+++++-.... ........++..|.++..+..+-.+ .+.+.++.+...
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~ 387 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDIDEA--AAERTAELIRAAGAVAHAYRVDVSD-ADAMEAFAEWVR 387 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHH
Confidence 45677888888999999888889999666653321 1222234456678777665443222 233444444433
No 333
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=28.54 E-value=2.3e+02 Score=27.14 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=32.7
Q ss_pred eEEEecCcchHHHHHHHHHHHc-CCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~l-Gi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.+++...+|..|.+++..|+.+ |++++.+.... .+.+.++.+|++-+.
T Consensus 151 ~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~------~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 151 ALLIIGGAGGVGSILIQLARQLTGLTVIATASRP------ESQEWVLELGAHHVI 199 (336)
T ss_pred EEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcH------HHHHHHHHcCCCEEE
Confidence 4555555788999988888887 98876665432 244556778986544
No 334
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.33 E-value=84 Score=23.49 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=21.4
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 184 GAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 184 SsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
++|=.|.+.|+..++.|.+++|+=-.
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecC
Confidence 67889999999999999988887644
No 335
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=28.22 E-value=92 Score=28.00 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=25.2
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~ 210 (382)
|..-++|.-|.++|..++..|++++++=+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 3445789999999999999999999999863
No 336
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=28.19 E-value=76 Score=30.29 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=24.5
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
|+..++|=.|.++|.+.++.|++++||=..
T Consensus 4 V~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 4 VAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 455789999999999999999999988754
No 337
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=28.07 E-value=2e+02 Score=28.60 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=30.8
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
.|+..++|.-|.+++..|+.+|++-++++... ..+.+.++.+|++-
T Consensus 193 ~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~-----~~~~~~a~~lGa~~ 238 (373)
T cd08299 193 TCAVFGLGGVGLSAIMGCKAAGASRIIAVDIN-----KDKFAKAKELGATE 238 (373)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCce
Confidence 34444789999999999999999433444322 23555678899853
No 338
>PRK06953 short chain dehydrogenase; Provisional
Probab=28.01 E-value=3.8e+02 Score=23.96 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
..+++.++|.-|.++|..-...|.+++++.... .+.+.++..+.+.+.++-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~------~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARDA------AALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECCH------HHHHHHHhccceEEEecC
Confidence 467888889999999988778899987765432 123345556777666554
No 339
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=27.83 E-value=1.8e+02 Score=27.68 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=34.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..++...+|.-|++++..|+.+|.+++++... ..|.+.++.+|++-+.
T Consensus 149 ~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~------~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 149 PVLVTGAAGGVGSVAVALLARLGYEVVASTGR------PEEADYLRSLGASEII 196 (324)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC------HHHHHHHHhcCCCEEE
Confidence 45665556999999999999999997666532 2355667889985433
No 340
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.76 E-value=4.5e+02 Score=23.56 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=28.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
++.+++.++|.-|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 357888888999999999999999998887754
No 341
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=27.76 E-value=3.7e+02 Score=25.50 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=32.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHH-cCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~-~GAeVv~ 231 (382)
+..++...+|--|.+++..|+.+|.+++++.... .+...++. +|++-+.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~------~~~~~~~~~~g~~~~~ 196 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD------EKCRWLVEELGFDAAI 196 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHhhcCCceEE
Confidence 3455555578999999999999999866555331 23444556 8985433
No 342
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.74 E-value=4.5e+02 Score=23.64 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=27.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+|+.++|.-|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 357888889999999999988899997766544
No 343
>PRK06847 hypothetical protein; Provisional
Probab=27.61 E-value=84 Score=30.91 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.8
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEe
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYM 207 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~Ivm 207 (382)
|+.-++|-.|.++|...++.|++++|+=
T Consensus 7 V~IVGaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 7 VLIVGGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 5557899999999999999999998884
No 344
>PRK08264 short chain dehydrogenase; Validated
Probab=27.53 E-value=3.1e+02 Score=24.72 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=27.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCC-eEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGL-QCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi-~~~IvmP~ 209 (382)
+..+++.++|.-|.++|......|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4578888899999999999999998 77666543
No 345
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=27.46 E-value=72 Score=32.08 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=23.8
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
|+.-++|..|.+.|+.|+..|.+++|+=-.
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEee
Confidence 344689999999999999999998888754
No 346
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=27.25 E-value=1.2e+02 Score=31.66 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=26.3
Q ss_pred CCEEEEcCChhhHHhHhhhhhh-cCCCcEEEEEeCCC
Q 016830 297 PDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAG 332 (382)
Q Consensus 297 pD~vvvpvG~GG~~aGi~~~~~-~~~~vrViGVep~g 332 (382)
.-.++|++|+|-+..-.+.+.+ .+..++|++||...
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 3467788889888877776654 56789999999754
No 347
>PRK07904 short chain dehydrogenase; Provisional
Probab=27.22 E-value=5e+02 Score=23.99 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=33.0
Q ss_pred eEEEecCcchHHHHHHHHHHHc-CCeEEEEeCCCcHHHHHHHHHHHHHcCC-EEEEEc
Q 016830 178 RIIAETGAGQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGA-EVRAVH 233 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~l-Gi~~~IvmP~~~~~~~~~kv~~~~~~GA-eVv~v~ 233 (382)
..+++.++|--|.++|...... |.+++++....+.. .....+.++..|. +++.+.
T Consensus 10 ~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~-~~~~~~~l~~~~~~~v~~~~ 66 (253)
T PRK07904 10 TILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPR-RDAAVAQMKAAGASSVEVID 66 (253)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchh-HHHHHHHHHhcCCCceEEEE
Confidence 4677777778888888887676 48888776543321 1122334555554 554443
No 348
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=27.16 E-value=3.6e+02 Score=22.26 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=34.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEe-CCCcHHHHHH-HHHHHHHcCCEEEEEcC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQAL-NVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~Ivm-P~~~~~~~~~-kv~~~~~~GAeVv~v~~ 234 (382)
..+++.++|..|.+++......|...++++ .......... ....++..|.++..+..
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 357778888899999988888887544444 3221111111 13455667888776654
No 349
>PLN02702 L-idonate 5-dehydrogenase
Probab=27.14 E-value=2.7e+02 Score=27.25 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=34.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v 232 (382)
.+++. ++|.-|.++...|+.+|.+.++.+... ..|.+.++.+|++.+..
T Consensus 184 ~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~~~ 232 (364)
T PLN02702 184 NVLVM-GAGPIGLVTMLAARAFGAPRIVIVDVD-----DERLSVAKQLGADEIVL 232 (364)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEEe
Confidence 34444 678899999999999999866665432 24566788899976543
No 350
>PRK08339 short chain dehydrogenase; Provisional
Probab=27.14 E-value=4.3e+02 Score=24.59 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=26.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+..+|+.+++.-|.++|......|.+++++-.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 34688888888999999999999999777654
No 351
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=27.14 E-value=5.6e+02 Score=26.95 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=13.7
Q ss_pred HhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 173 RLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 173 ~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
..+.+.+|+-+.||++++.+|.. +-..+.+.+.|
T Consensus 371 ~~~akaIVv~T~SG~TA~~vSr~--rp~~PIiAvT~ 404 (473)
T TIGR01064 371 KLDAKAIVVLTESGRTARLLSKY--RPNAPIIAVTP 404 (473)
T ss_pred hcCCCEEEEEcCChHHHHHHHhh--CCCCCEEEEcC
Confidence 33433344444444444444322 33344444444
No 352
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=26.98 E-value=2e+02 Score=29.97 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=35.0
Q ss_pred EEecCc---chHHHHHHHHHHHc-CCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 180 IAETGA---GQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 180 Vv~aSs---GNhG~AlA~aA~~l-Gi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
|+-.+. +|.+.+++.+++.+ |++++++.|+...- +..-+..++..|+.|..++
T Consensus 244 Ia~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~-~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 244 IALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEM-PAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCcccc-CHHHHHHHHhcCCeEEEEc
Confidence 333445 48899999996664 99999999985311 1222344556788887653
No 353
>PRK07060 short chain dehydrogenase; Provisional
Probab=26.93 E-value=4.7e+02 Score=23.51 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=35.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
++.+++.++|.-|..++......|.+++++..... .. .......+.+++.++-
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~----~~-~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAA----AL-DRLAGETGCEPLRLDV 62 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHH----HH-HHHHHHhCCeEEEecC
Confidence 45788888899999999999999998777654321 11 1223445677776654
No 354
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=26.92 E-value=2.6e+02 Score=27.71 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=32.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
.+++ .+.|.-|.+++..|+.+|.+.+++.... ..|.+.++.+|+..
T Consensus 179 ~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~~~-----~~~~~~~~~~g~~~ 224 (375)
T cd08282 179 TVAV-FGAGPVGLMAAYSAILRGASRVYVVDHV-----PERLDLAESIGAIP 224 (375)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHcCCeE
Confidence 3444 6778999999999999998544445332 24666788899854
No 355
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=26.88 E-value=2.7e+02 Score=26.29 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=33.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
.+.++...+|..|.+++..++.+|.+++++.... .+...++.+|++.+
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~~~~~~ 211 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP------EKLKILKELGADYV 211 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHcCCcEE
Confidence 3466667778999999999999999987666431 12334566777543
No 356
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=26.79 E-value=73 Score=30.30 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=24.1
Q ss_pred CCEEEEcCChhhHHhHhhhhhhcCCCcEEEEEeCCCC
Q 016830 297 PDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGF 333 (382)
Q Consensus 297 pD~vvvpvG~GG~~aGi~~~~~~~~~vrViGVep~g~ 333 (382)
.|+|||..|.||...+-- +..+++.+|.-+|....
T Consensus 1 yD~iIVGsG~~G~v~A~r--Ls~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASR--LSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHH--HTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHH--HhhCCCCcEEEEEcccc
Confidence 489999999888764432 22456789999998765
No 357
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=26.25 E-value=3.4e+02 Score=27.39 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=38.5
Q ss_pred CCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 175 g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+++.-|+..+.|-.|....-.|+.+|.+++.+--. ..|.+..+.+||+.+....
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~------~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS------EEKLELAKKLGADHVINSS 218 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC------hHHHHHHHHhCCcEEEEcC
Confidence 34445666777866666666688899777766533 3577889999999988644
No 358
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=26.24 E-value=2.9e+02 Score=27.18 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHH----HHHcCCEEEEEc
Q 016830 186 GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR----MRLLGAEVRAVH 233 (382)
Q Consensus 186 GNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~----~~~~GAeVv~v~ 233 (382)
.|...+++.+++++|++++++.|+.... +...++. .+..|+++...+
T Consensus 158 ~~v~~Sl~~~l~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 158 NNVCNSLMLAGAKLGMDVVVATPEGYEP-DADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred CchHHHHHHHHHHcCCEEEEECCchhcC-CHHHHHHHHHHHHHcCCeEEEEc
Confidence 5899999999999999999999984311 1111222 355788887653
No 359
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.19 E-value=5e+02 Score=23.65 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=24.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVY 206 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~Iv 206 (382)
+.|+..+.||-|..+|......|.+++++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 45677888999999999999999988744
No 360
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=26.11 E-value=3.6e+02 Score=26.49 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=32.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
+.++ .++|..|.+++..|+.+|.+.++..... ..+...++.+|++-
T Consensus 186 ~vlI-~g~g~vG~~a~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~ 231 (365)
T cd05279 186 TCAV-FGLGGVGLSVIMGCKAAGASRIIAVDIN-----KDKFEKAKQLGATE 231 (365)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCCe
Confidence 3444 4789999999999999999865555332 23555678899853
No 361
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=26.09 E-value=2.9e+02 Score=26.72 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=22.3
Q ss_pred EEEecCcchHHHHHHHHHHHcCCe-EEEEeC
Q 016830 179 IIAETGAGQHGVATATVCARFGLQ-CIVYMG 208 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~-~~IvmP 208 (382)
.++..++|-.|+|+|++....|.+ ++|+-.
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 344456689999999999999998 555443
No 362
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.04 E-value=3.1e+02 Score=28.83 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=33.4
Q ss_pred CeEEEecCcch-HHHHHHHH--HHHcCCeEEEEeCCCc-HHHHHHHHHHHHHcCCEEE
Q 016830 177 TRIIAETGAGQ-HGVATATV--CARFGLQCIVYMGAQD-MERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 177 ~~~Vv~aSsGN-hG~AlA~a--A~~lGi~~~IvmP~~~-~~~~~~kv~~~~~~GAeVv 230 (382)
++++|-++.|| -|=+++.| -...|+++.|+++... ....+.+..+++.+|..+.
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKRTDKPLYNGLVTQLESLSVPFL 117 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCHHHHHHHHHHHHcCCcee
Confidence 35677778885 55555555 4447999999986521 1112335566777776553
No 363
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.02 E-value=4.9e+02 Score=23.48 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=27.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+++.++|.-|.++|..-...|.++++....
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 357888889999999999888899988776543
No 364
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=25.99 E-value=5.6e+02 Score=24.11 Aligned_cols=129 Identities=9% Similarity=0.005 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEec-cc---C
Q 016830 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILG-SV---A 265 (382)
Q Consensus 190 ~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~-s~---~ 265 (382)
.++-.+++.+|++..++-+..+.+.....++.+..-|.+++.... ..+.++..++. .+.++..|++- .. .
T Consensus 21 ~G~~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g--~~~~~~~~~vA----~~~p~~~F~~~d~~~~~~ 94 (258)
T cd06353 21 EGRKAAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFGTS--FGFMDAALKVA----KEYPDVKFEHCSGYKTAP 94 (258)
T ss_pred HHHHHHHHhcCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECc--hhhhHHHHHHH----HHCCCCEEEECCCCCCCC
Confidence 444445566899988887763444445577777778999998854 34556544433 33456667662 21 1
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChh------hHHhHhhhhhh-cCCCcEEEEEeCC
Q 016830 266 GPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG------SNAMGLFHEFV-NDKDVRLIGVEAA 331 (382)
Q Consensus 266 n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~G------G~~aGi~~~~~-~~~~vrViGVep~ 331 (382)
|...+.....++.+.+|.-... ..+.+ + |.=+|+. -...|...+.+ .+|+++|+.....
T Consensus 95 Nv~~~~~~~~e~~ylaG~~Aa~--~t~t~-k----VG~I~g~~~~~~~~~~~gF~~G~~~~~p~~~v~~~~~g 160 (258)
T cd06353 95 NVGSYFARIYEGRYLAGVVAGK--MTKTN-K----VGYVAAFPIPEVVRGINAFALGARSVNPDATVKVIWTG 160 (258)
T ss_pred CeeeEechhhHHHHHHHHHHHH--hhcCC-c----EEEEcCcccHHHHHHHHHHHHHHHHHCCCcEEEEEEec
Confidence 2222211223344444433221 11221 1 2222333 22345555666 6899998877664
No 365
>PLN02253 xanthoxin dehydrogenase
Probab=25.95 E-value=5.4e+02 Score=23.90 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=26.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+..+|+.++|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 35788899999999999998889998877654
No 366
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=25.95 E-value=1.1e+02 Score=32.34 Aligned_cols=43 Identities=28% Similarity=0.398 Sum_probs=33.1
Q ss_pred cCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 183 TGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 183 aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
.|||-.|.++|.++...|-+++++....+.. .-.|.+++.|+.
T Consensus 279 ~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---------~p~~v~~i~V~t 321 (475)
T PRK13982 279 RSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---------DPQGVKVIHVES 321 (475)
T ss_pred CCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---------CCCCceEEEecC
Confidence 4788999999999999999999999653311 125778887764
No 367
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=25.83 E-value=2.5e+02 Score=26.68 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=33.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+++++...+|-.|++++..|+.+|.+++++.... .+...++.+|++-+.
T Consensus 141 ~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~v~ 189 (329)
T cd08250 141 ETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSD------EKAEFLKSLGCDRPI 189 (329)
T ss_pred CEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcH------HHHHHHHHcCCceEE
Confidence 3456656678999999999999999866655321 234456778875443
No 368
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=25.78 E-value=3.6e+02 Score=28.94 Aligned_cols=54 Identities=20% Similarity=0.121 Sum_probs=37.9
Q ss_pred EEEecCc---chHHHHHHHHHHHcC-CeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 179 IIAETGA---GQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 179 ~Vv~aSs---GNhG~AlA~aA~~lG-i~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
.|+-.+. +|.+.+++.+++.+| ++++++.|+...- +..-++.++..|+.+..++
T Consensus 176 kVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~-p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 176 HIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAM-PEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred EEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccC-CHHHHHHHHHcCCeEEEEc
Confidence 3444455 588999999999998 9999999985311 2223455666888887654
No 369
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=25.73 E-value=5e+02 Score=24.65 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=33.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
+..++...+|..|++++..|+.+|++++.+.+.. .+...++.+|++-+
T Consensus 142 ~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~------~~~~~~~~~g~~~~ 189 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSA------QKAQRAKKAGAWQV 189 (327)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHCCCCEE
Confidence 3445545678999999999999999976665431 23444677898543
No 370
>PRK07856 short chain dehydrogenase; Provisional
Probab=25.62 E-value=5.2e+02 Score=23.58 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=26.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+++.++|--|.++|..-...|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 457888888899999999988899988777543
No 371
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=25.62 E-value=2.2e+02 Score=28.54 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=35.3
Q ss_pred EEEecCcc--hHHHHHHHHHHHcCCeEEEEeCCCcHHHHHH--HH-HHHHHcCCEEEEEc
Q 016830 179 IIAETGAG--QHGVATATVCARFGLQCIVYMGAQDMERQAL--NV-FRMRLLGAEVRAVH 233 (382)
Q Consensus 179 ~Vv~aSsG--NhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~--kv-~~~~~~GAeVv~v~ 233 (382)
.|+-.+.+ |.+.++..+++++|++++++-|+........ +. ...+..|+++...+
T Consensus 158 ~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 158 TLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444444 7899999999999999999999852110111 11 22355688876653
No 372
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.62 E-value=6e+02 Score=25.21 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=36.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEA 246 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a 246 (382)
+..++|.+++--|+++|.-.+++|-+.++.==.... ....+..++..| +++...-+-.+.+|..+.+
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~--~~etv~~~~~~g-~~~~y~cdis~~eei~~~a 105 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQG--NEETVKEIRKIG-EAKAYTCDISDREEIYRLA 105 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccc--hHHHHHHHHhcC-ceeEEEecCCCHHHHHHHH
Confidence 335666555579999999999999854433222111 223445566667 5544322223455544433
No 373
>PLN02583 cinnamoyl-CoA reductase
Probab=25.60 E-value=3.9e+02 Score=25.49 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=28.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+.++|+.++|--|..++......|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 457888889999999999999999999888754
No 374
>PRK09126 hypothetical protein; Provisional
Probab=25.52 E-value=80 Score=31.32 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=25.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
|+..++|-.|.++|.+.++.|++++|+=-
T Consensus 6 viIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 6 IVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 44578999999999999999999988853
No 375
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=25.42 E-value=4.4e+02 Score=26.90 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=35.5
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCC------cHHHHHHHHHHHHHcCCEEE
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQ------DMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~------~~~~~~~kv~~~~~~GAeVv 230 (382)
++.-++|..|.-+|...+.+|.+++++.+.. +++....-.+.++..|.+++
T Consensus 151 vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 151 ALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR 207 (438)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEE
Confidence 4445789999999999999999999998642 22212223445667777665
No 376
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=25.41 E-value=4.7e+02 Score=24.73 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=43.2
Q ss_pred HHHhCCCeEEEecCcc-hHHHHHHHHHHHcC-CeE-EEEeCC--CcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 171 AKRLGKTRIIAETGAG-QHGVATATVCARFG-LQC-IVYMGA--QDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 171 a~~~g~~~~Vv~aSsG-NhG~AlA~aA~~lG-i~~-~IvmP~--~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
.++.+.+..|+.-|+| ......+.+.+.+| -++ .|+||. .+.+....-....+.+|.+...++-
T Consensus 13 ~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i 81 (242)
T PF02540_consen 13 VKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDI 81 (242)
T ss_dssp HHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEES
T ss_pred HHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccch
Confidence 3456777788888888 67777777777786 444 488884 2222223345567889999988864
No 377
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=25.34 E-value=1.3e+02 Score=27.81 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCChhhHHhHhhhhhhcCCCcEEEEEeCCCCCCC-CccccccccCCcceeeCCCcceeee
Q 016830 283 KETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLD-SGKHAATLSKGEVGVLHGALSYLLQ 361 (382)
Q Consensus 283 ~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aGi~~~~~~~~~vrViGVep~g~~~~-~~~~~~sl~~G~~g~~~g~~~~~l~ 361 (382)
.|+....+..+...++-++.=+|.|+-..++-.+ +..|..|+|++|....... ...+.+.+--....++.|.--..|.
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 6666666677777888888888877777777655 4679999999997554221 1223333332234455554444443
No 378
>PRK06482 short chain dehydrogenase; Provisional
Probab=25.15 E-value=5.5e+02 Score=23.76 Aligned_cols=32 Identities=6% Similarity=-0.040 Sum_probs=26.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
..+|+.++|.-|.++|..-...|.+++++...
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47888889999999999888889998877654
No 379
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=24.95 E-value=2.6e+02 Score=26.20 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCCCEEE-EcCChhhHHhHhhhhhh-cCCCcEEEEEeCCCC
Q 016830 283 KETRRQALEKWGGKPDVLI-ACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGF 333 (382)
Q Consensus 283 ~Ei~~Qi~e~~g~~pD~vv-vpvG~GG~~aGi~~~~~-~~~~vrViGVep~g~ 333 (382)
+|++.|+ +||.|+ ..+-.||.+.=.+.-+. .+++.+|+||+..-.
T Consensus 25 qeli~~~------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir 71 (206)
T PF04989_consen 25 QELIWEL------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIR 71 (206)
T ss_dssp HHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GT
T ss_pred HHHHHHh------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcc
Confidence 5555554 599888 55656665533333333 468899999999543
No 380
>PRK05875 short chain dehydrogenase; Provisional
Probab=24.94 E-value=5.5e+02 Score=23.70 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=27.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
++.+++.++|.-|.++|......|.+++++...
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 457888888999999999988899987776643
No 381
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=24.86 E-value=3.3e+02 Score=27.24 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHcCCeEEEEeC-CCcHHHHHH--HH-HHHHHcCCEEEEEc
Q 016830 186 GQHGVATATVCARFGLQCIVYMG-AQDMERQAL--NV-FRMRLLGAEVRAVH 233 (382)
Q Consensus 186 GNhG~AlA~aA~~lGi~~~IvmP-~~~~~~~~~--kv-~~~~~~GAeVv~v~ 233 (382)
+|...+++.++.++|++++++.| +.....+.. +. ...+..|.++...+
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 37899999999999999999999 532100111 11 12356788887653
No 382
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=24.82 E-value=2.5e+02 Score=29.22 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=24.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVY 206 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~Iv 206 (382)
++.|+..+.|+-|+.+|..++.+|.+++++
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~ 241 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVT 241 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 345667889999999999999999985554
No 383
>PRK06484 short chain dehydrogenase; Validated
Probab=24.71 E-value=6.2e+02 Score=26.12 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=40.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+|+.+++.-|.++|..-...|.+++++-.... . .....+.+|.+++.+..+-.+ .+.++++.+...+
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~----~-~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 75 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVE----R-ARERADSLGPDHHALAMDVSD-EAQIREGFEQLHR 75 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----H-HHHHHHHhCCceeEEEeccCC-HHHHHHHHHHHHH
Confidence 35677777778899999998889998777643211 1 112344457776554432122 2334445554433
No 384
>PRK07326 short chain dehydrogenase; Provisional
Probab=24.65 E-value=5.1e+02 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=26.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+..+++.++|.-|.++|......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 45788888899999999998888999777653
No 385
>PRK07024 short chain dehydrogenase; Provisional
Probab=24.39 E-value=5.5e+02 Score=23.50 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=25.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+.+++.++|--|.++|..-.+.|.+++++..
T Consensus 4 ~vlItGas~gIG~~la~~l~~~G~~v~~~~r 34 (257)
T PRK07024 4 KVFITGASSGIGQALAREYARQGATLGLVAR 34 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4788888889999999998888998777654
No 386
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.33 E-value=2.9e+02 Score=25.79 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=30.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
..++...+|..|.+++..|+.+|.+++.+.+. .+...++.+|++-
T Consensus 146 ~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-------~~~~~~~~~g~~~ 190 (319)
T cd08267 146 RVLINGASGGVGTFAVQIAKALGAHVTGVCST-------RNAELVRSLGADE 190 (319)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-------HHHHHHHHcCCCE
Confidence 34444446899999999999999987666532 1334457788743
No 387
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=24.33 E-value=79 Score=27.31 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=25.2
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 016830 181 AETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (382)
Q Consensus 181 v~aSsGNhG~AlA~aA~~lGi~~~IvmP~~ 210 (382)
+..++|.-+.+++..++.+|++++++=|..
T Consensus 2 ~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 2 VIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred EEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 446899999999999999999999999873
No 388
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=24.27 E-value=5.2e+02 Score=23.69 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=32.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
..++...+|..|++++..++.+|++.+.+.+.. .+.+.++.+|++-
T Consensus 123 ~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~ 168 (303)
T cd08251 123 HILIQTATGGTGLMAVQLARLKGAEIYATASSD------DKLEYLKQLGVPH 168 (303)
T ss_pred EEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCH------HHHHHHHHcCCCE
Confidence 455556678899999999999999866655432 2444567788753
No 389
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=24.26 E-value=2.1e+02 Score=28.66 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=34.8
Q ss_pred EEecCcc--hHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHH----HHHHHcCCEEEEEc
Q 016830 180 IAETGAG--QHGVATATVCARFGLQCIVYMGAQDMERQALNV----FRMRLLGAEVRAVH 233 (382)
Q Consensus 180 Vv~aSsG--NhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv----~~~~~~GAeVv~v~ 233 (382)
|+-.+.+ |.+.+++.+++++|++++++.|+.... +..-+ ...+..|+++...+
T Consensus 158 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 158 FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNP-DDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred EEEecCCCcchHHHHHHHHHHcCCEEEEECCccccC-CHHHHHHHHHHHHHcCCeEEEEc
Confidence 3334443 899999999999999999999984210 11111 22345788887653
No 390
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=24.26 E-value=2.9e+02 Score=28.15 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=36.3
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCC------cHHHHHHHHHHHHHcCCEEEE
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQ------DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~------~~~~~~~kv~~~~~~GAeVv~ 231 (382)
|+.-++|..|..+|...+++|.+++++-+.. +++....-.+.++..|.+++.
T Consensus 160 vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~ 217 (438)
T PRK07251 160 LGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLL 217 (438)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 4556889999999999999999999987532 222222233456777887653
No 391
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.22 E-value=5.4e+02 Score=23.29 Aligned_cols=134 Identities=19% Similarity=0.124 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCeEEEE-eCCCcHHHHHHHHHHHHHcCCEEEEEcCC-CCCHHHHHHHHHHHHHHccCCceEEeccc-
Q 016830 188 HGVATATVCARFGLQCIVY-MGAQDMERQALNVFRMRLLGAEVRAVHSG-TATLKDATSEAIRDWVTNVETTHYILGSV- 264 (382)
Q Consensus 188 hG~AlA~aA~~lGi~~~Iv-mP~~~~~~~~~kv~~~~~~GAeVv~v~~~-~~~~~da~~~a~~~~~~~~~~~~y~~~s~- 264 (382)
...++-.+|+.+|+...++ -...+.+.+...++.+...|.+-+.+.+. .....+.++++.+ . .-....+++.
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~----~-gIpvv~~d~~~ 90 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKA----A-GIPVVTVDSDE 90 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHH----T-TSEEEEESSTH
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhh----c-CceEEEEeccc
Confidence 4455566677778887775 44445555556666677777775554432 1223333333221 1 1112222222
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhH------HhHhhhhhhcCCCcEEEE
Q 016830 265 AGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSN------AMGLFHEFVNDKDVRLIG 327 (382)
Q Consensus 265 ~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~------~aGi~~~~~~~~~vrViG 327 (382)
....+....+..-+..+|..+.+++.++.+.....+++ .|.-+. ..|+-.+++..++++++.
T Consensus 91 ~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~-~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~ 158 (257)
T PF13407_consen 91 APDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLIL-SGSPGNPNTQERLEGFRDALKEYPGVEIVD 158 (257)
T ss_dssp HTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEE-ESSTTSHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cccccceeeeeccHHHHHHHHHHHHHHHhccCceEEec-cCCCCchHHHHHHHHHHHHHhhcceeeeee
Confidence 01111111222234456777777887777654334433 332222 223333444456888888
No 392
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=24.11 E-value=3.1e+02 Score=27.26 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=35.4
Q ss_pred hCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCC
Q 016830 174 LGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT 236 (382)
Q Consensus 174 ~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~ 236 (382)
.+.+. ++..++|.+|..++..+...+-.-.|++|..+- ......++..|++++.++.+.
T Consensus 44 ~g~~~-~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~---~~~~~~~~~~G~~~v~~d~d~ 102 (375)
T PRK11706 44 FGSAK-VLLTPSCTAALEMAALLLDIQPGDEVIMPSYTF---VSTANAFVLRGAKIVFVDIRP 102 (375)
T ss_pred hCCCe-EEEECCHHHHHHHHHHHhCCCCCCEEEECCCCc---HHHHHHHHHcCCEEEEEecCC
Confidence 45554 445677888876655443233334567776331 234456788899999987643
No 393
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=24.06 E-value=4.8e+02 Score=26.40 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=36.0
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC-------cHHHHHHHHHHHHHcCCEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ-------DMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~-------~~~~~~~kv~~~~~~GAeVv 230 (382)
.|+..++|..|.-+|...+++|.+++++.... +++....-.+.++..|.+++
T Consensus 151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~ 209 (444)
T PRK09564 151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELH 209 (444)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEE
Confidence 34557889999999999999999999987542 11112223345777887765
No 394
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=24.04 E-value=3.9e+02 Score=25.69 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=33.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..++ .++|..|.++...|+.+|.+.+++... + ..|.+..+.+|++.+.
T Consensus 166 ~vlV-~~~g~vg~~~~~la~~~G~~~v~~~~~-~----~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 166 DVLI-TGAGPIGIMAAAVAKHVGARHVVITDV-N----EYRLELARKMGATRAV 213 (341)
T ss_pred eEEE-ECCCHHHHHHHHHHHHcCCCEEEEEcC-C----HHHHHHHHHhCCcEEe
Confidence 4555 457899999999999999964444432 2 2356677889997644
No 395
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=24.03 E-value=5.4e+02 Score=23.65 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=32.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..++...+|..|++++..|+.+|.+++++... . .+.+.++.+|++-+.
T Consensus 139 ~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~--~----~~~~~~~~~g~~~~~ 186 (320)
T cd05286 139 TVLVHAAAGGVGLLLTQWAKALGATVIGTVSS--E----EKAELARAAGADHVI 186 (320)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCEEEEEcCC--H----HHHHHHHHCCCCEEE
Confidence 34444447899999999999999986655432 1 244456778985444
No 396
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=24.02 E-value=3.4e+02 Score=27.19 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=35.5
Q ss_pred EEecCcc--hHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHH----HHHHcCCEEEEEc
Q 016830 180 IAETGAG--QHGVATATVCARFGLQCIVYMGAQDMERQALNVF----RMRLLGAEVRAVH 233 (382)
Q Consensus 180 Vv~aSsG--NhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~----~~~~~GAeVv~v~ 233 (382)
|+-.+.+ |.+.+++.+++++|++++++.|+.... +..-++ ..+..|.++...+
T Consensus 158 va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 158 LAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWP-EEELVALAREIAKETGAKITITE 216 (331)
T ss_pred EEEECCCcccHHHHHHHHHHHcCCEEEEECCccccc-CHHHHHHHHHHHHHcCCeEEEEc
Confidence 3334555 799999999999999999999985311 111122 2345788887653
No 397
>PRK08227 autoinducer 2 aldolase; Validated
Probab=24.02 E-value=6.7e+02 Score=24.31 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCeEEEecCcc--h------HHHHHHHHHHHcCCeEEEEeCCCc-----HHHHHHHHHHHHHcCCEEE
Q 016830 164 AVGQALLAKRLGKTRIIAETGAG--Q------HGVATATVCARFGLQCIVYMGAQD-----MERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 164 a~~~l~~a~~~g~~~~Vv~aSsG--N------hG~AlA~aA~~lGi~~~IvmP~~~-----~~~~~~kv~~~~~~GAeVv 230 (382)
...-+..|.+.|.+.+.+.--=| + .-..++..|+++|+++++++|... .+.-..-...--.+||+|+
T Consensus 96 l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiV 175 (264)
T PRK08227 96 VAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQII 175 (264)
T ss_pred ceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEE
Confidence 33446678888877533322222 1 234456679999999999888632 1111122344567899999
Q ss_pred EEcC
Q 016830 231 AVHS 234 (382)
Q Consensus 231 ~v~~ 234 (382)
-+..
T Consensus 176 K~~y 179 (264)
T PRK08227 176 KTYY 179 (264)
T ss_pred ecCC
Confidence 9875
No 398
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=23.92 E-value=5.3e+02 Score=25.20 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=30.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
++++. ++|.-|.+++..|+.+|.+.++++.... .|...++.+|++-
T Consensus 185 ~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~~~-----~~~~~~~~~g~~~ 230 (363)
T cd08279 185 TVAVI-GCGGVGLNAIQGARIAGASRIIAVDPVP-----EKLELARRFGATH 230 (363)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcCCH-----HHHHHHHHhCCeE
Confidence 45555 6789999999999999997344442221 2445567889843
No 399
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=23.72 E-value=2.9e+02 Score=28.55 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=36.1
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC------cHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ------DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~------~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++|..|..+|...+++|.+++++-+.. +.+....-.+.++..|.+++.
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~ 240 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVT 240 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEe
Confidence 34456789999999999999999999986431 222122223456777877653
No 400
>PRK14694 putative mercuric reductase; Provisional
Probab=23.66 E-value=3.4e+02 Score=28.03 Aligned_cols=53 Identities=23% Similarity=0.166 Sum_probs=37.7
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC-----cHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ-----DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~-----~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.++.-++|..|.-+|...+.+|.+++++.+.. +++....-...++..|.+++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~ 237 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLK 237 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 35556889999999999999999999998641 222233344556777877654
No 401
>PRK05717 oxidoreductase; Validated
Probab=23.55 E-value=5.7e+02 Score=23.34 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=41.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~ 252 (382)
+..+++.++|.-|.++|..-...|.+++++-.... ......+..+.+++.+..+-.+ .+.+..+++...+
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~ 80 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRE-----RGSKVAKALGENAWFIAMDVAD-EAQVAAGVAEVLG 80 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHH-----HHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHH
Confidence 35788888999999999998889988777643211 1112234456666555433222 2334444444333
No 402
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=23.48 E-value=2.1e+02 Score=29.50 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVY 206 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~Iv 206 (382)
++.|+..+.|+-|+.+|..++.+|.+++++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~ 224 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVT 224 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEE
Confidence 446777899999999999999999996654
No 403
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=23.46 E-value=3.6e+02 Score=25.86 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=31.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
.|+..++|--|.++...|+.+|.+.+++.... ..+...++.+|++-
T Consensus 164 ~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~ 209 (341)
T cd08262 164 VALVIGCGPIGLAVIAALKARGVGPIVASDFS-----PERRALALAMGADI 209 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHcCCcE
Confidence 34444578899888888999999876665432 23555677889853
No 404
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=23.46 E-value=2.5e+02 Score=32.34 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=0.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEE-------------eCC--CcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVY-------------MGA--QDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~Iv-------------mP~--~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
++-|+.-++|-.|.+.|+..++.|++++|| .|+ -..+.....+++++.+|.+++.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~ 375 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEE
No 405
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=23.45 E-value=3e+02 Score=29.21 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=38.7
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
.++..+.|+.|+.+|-.-+..|++++++=.+ +.+++..+.+|.+++.-+.
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d------~~~~~~~~~~g~~~i~GD~ 468 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETS------RTRVDELRERGIRAVLGNA 468 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEECC------HHHHHHHHHCCCeEEEcCC
Confidence 4566899999999999999999998777643 2356667788988877543
No 406
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=23.42 E-value=3.6e+02 Score=25.40 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=31.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
..++...+|.-|++++..|+.+|.+.+++.... .+.+.++.+|++-
T Consensus 141 ~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~ 186 (323)
T cd05282 141 WVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD------EQVEELKALGADE 186 (323)
T ss_pred EEEEcccccHHHHHHHHHHHHCCCeEEEEecCh------HHHHHHHhcCCCE
Confidence 445555568899999999999999976655432 2344457788753
No 407
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=23.34 E-value=5.1e+02 Score=22.74 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=41.7
Q ss_pred CCCeEEEecCcchHHHHHHHHHHH-cCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 175 GKTRIIAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 175 g~~~~Vv~aSsGNhG~AlA~aA~~-lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
..+++|+.+++| ++++.+|++ .|++|-++....+- + ..-+-.+|+|+..+...-+.+.+. +.++.|+
T Consensus 55 ~~~~GIliCGtG---iG~siaANK~~GIraa~~~d~~~A-----~-~ar~hNnaNVl~lGar~ig~~~a~-~iv~~fL 122 (144)
T TIGR00689 55 EVSLGILICGTG---IGMSIAANKFKGIRAALCVDEYTA-----A-LARQHNDANVLCLGSRVVGVELAL-SIVDAFL 122 (144)
T ss_pred CCceEEEEcCCc---HHHHHHHhcCCCeEEEEECCHHHH-----H-HHHHhcCCcEEEECccccCHHHHH-HHHHHHH
Confidence 345778877754 688889998 79999999854221 1 123457899988875322334433 3444444
No 408
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=23.33 E-value=5.2e+02 Score=22.81 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=42.0
Q ss_pred CCCeEEEecCcchHHHHHHHHHHH-cCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 016830 175 GKTRIIAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (382)
Q Consensus 175 g~~~~Vv~aSsGNhG~AlA~aA~~-lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~ 251 (382)
..+++|+.+++| ++++.+|++ .|++|-++....+- + ..-+...|+|.......-+.+.+. +.++.|+
T Consensus 58 ~~~~GIliCGtG---iG~siaANK~~GIRAA~~~d~~~A-----~-~ar~hNnaNVL~lG~r~ig~~~a~-~iv~~fl 125 (148)
T PRK05571 58 EADRGILICGTG---IGMSIAANKVKGIRAALCHDTYSA-----H-LAREHNNANVLALGARVIGPELAK-DIVDAFL 125 (148)
T ss_pred CCCEEEEEcCCc---HHHHHHHhcCCCeEEEEECCHHHH-----H-HHHHhcCCcEEEECccccCHHHHH-HHHHHHH
Confidence 346778777754 688889988 79999999854221 1 123456899988865322334433 3445554
No 409
>PRK06101 short chain dehydrogenase; Provisional
Probab=23.31 E-value=5.1e+02 Score=23.53 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=25.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
..+++.++|.-|.++|..-...|.+++++-.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGR 33 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEEC
Confidence 4678888899999999888888999777654
No 410
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=23.27 E-value=6.8e+02 Score=24.10 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=24.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcC-CeEEEEeCC
Q 016830 178 RIIAETGAGQHGVATATVCARFG-LQCIVYMGA 209 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lG-i~~~IvmP~ 209 (382)
..+++.+++--|.++|......| .+++++...
T Consensus 5 ~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 5 TVIITGASSGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46777777778888888877889 887776543
No 411
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=23.26 E-value=3e+02 Score=26.53 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=31.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcC-CeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 178 RIIAETGAGQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lG-i~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
+.++ .++|..|.+++..|+.+| .++++ +... ..|...++.+|++-
T Consensus 169 ~vlI-~g~g~~g~~~~~~a~~~G~~~v~~-~~~~-----~~~~~~~~~~g~~~ 214 (345)
T cd08286 169 TVAI-VGAGPVGLAALLTAQLYSPSKIIM-VDLD-----DNRLEVAKKLGATH 214 (345)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCeEEE-EcCC-----HHHHHHHHHhCCCc
Confidence 4555 467999999999999999 56544 4332 23556678899853
No 412
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=23.18 E-value=3.6e+02 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=35.6
Q ss_pred EEEecCcc--hHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHH----HHHHHcCCEEEEEc
Q 016830 179 IIAETGAG--QHGVATATVCARFGLQCIVYMGAQDMERQALNV----FRMRLLGAEVRAVH 233 (382)
Q Consensus 179 ~Vv~aSsG--NhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv----~~~~~~GAeVv~v~ 233 (382)
.|+-.+.+ |.+.++..+++++|++++++.|+.... ...-+ ...+..|+++...+
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 158 TLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWP-EAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcC-cHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444554 689999999999999999999985311 11111 22455788887653
No 413
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=23.07 E-value=2.8e+02 Score=27.79 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=36.1
Q ss_pred EEEecCc---chHHHHHHHH-HHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 179 IIAETGA---GQHGVATATV-CARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 179 ~Vv~aSs---GNhG~AlA~a-A~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
.|+-.+. +|.+.+++.+ ++.+|++++++-|+... .+..-++.++..|.++..++
T Consensus 161 kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~-~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 161 HIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELA-MPDYVISDIENAGHKITITD 218 (338)
T ss_pred EEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCcccc-CCHHHHHHHHHcCCeEEEEc
Confidence 3444455 4789998876 66779999999998531 12223445667788887764
No 414
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=22.86 E-value=4.7e+02 Score=23.80 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=42.5
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 016830 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (382)
Q Consensus 184 SsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~ 254 (382)
+++.-|.++|....+.|.++++.-...... ...-....+.+|.+++.++-. + .+.++.+.+...+..
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~-~~~~~~l~~~~~~~~~~~D~~--~-~~~v~~~~~~~~~~~ 70 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKL-ADALEELAKEYGAEVIQCDLS--D-EESVEALFDEAVERF 70 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHH-HHHHHHHHHHTTSEEEESCTT--S-HHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHH-HHHHHHHHHHcCCceEeecCc--c-hHHHHHHHHHHHhhc
Confidence 456789999999999999998887664321 122334566789998666542 2 334555555544443
No 415
>PRK14727 putative mercuric reductase; Provisional
Probab=22.84 E-value=3e+02 Score=28.50 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=36.3
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC-----cHHHHHHHHHHHHHcCCEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ-----DMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~-----~~~~~~~kv~~~~~~GAeVv 230 (382)
.|+.-++|..|.-+|...+.+|.+++++.... +++....-.+.++..|.+++
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~ 246 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVL 246 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEE
Confidence 35556889999999999999999999997541 22222223345667787765
No 416
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=22.79 E-value=6.2e+02 Score=24.20 Aligned_cols=45 Identities=27% Similarity=0.250 Sum_probs=31.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
++++. ++|.-|.+++..|+.+|++++++... . .+...++.+|++-
T Consensus 162 ~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~s--~----~~~~~~~~~g~~~ 206 (337)
T cd08261 162 TVLVV-GAGPIGLGVIQVAKARGARVIVVDID--D----ERLEFARELGADD 206 (337)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCeEEEECCC--H----HHHHHHHHhCCCE
Confidence 44554 67888999999999999997766543 1 2444567788653
No 417
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=22.74 E-value=5.9e+02 Score=24.13 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=30.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAe 228 (382)
++++. ++|..|.+++..|+.+|++.+++...+. .+...++.+|++
T Consensus 162 ~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~~~-----~~~~~~~~~g~~ 206 (334)
T cd08234 162 SVLVF-GAGPIGLLLAQLLKLNGASRVTVAEPNE-----EKLELAKKLGAT 206 (334)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCCH-----HHHHHHHHhCCe
Confidence 34444 6788999999999999998444443322 244556788986
No 418
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=22.70 E-value=2.3e+02 Score=29.13 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=37.1
Q ss_pred EEEecCcchHHHHHHHHHHHcCC-eEEEEeCCCc--HHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGL-QCIVYMGAQD--MERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi-~~~IvmP~~~--~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++||.|.-+|..+.++|. +++++..... ..........++..|.+++.
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 45567889999999999999998 7888875321 11112234567788888775
No 419
>PRK12742 oxidoreductase; Provisional
Probab=22.55 E-value=5.6e+02 Score=22.88 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=34.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+..+|+.++|.-|.++|......|.++++...... + .. .......+.+.+.++.
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~-~--~~-~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSK-D--AA-ERLAQETGATAVQTDS 60 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCH-H--HH-HHHHHHhCCeEEecCC
Confidence 35788888889999999998889998776643321 1 11 1122345777665553
No 420
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=22.47 E-value=6.2e+02 Score=24.18 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=30.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
.+++. ++|--|.+++..|+.+|++.+++..... .+...++.+|++-+
T Consensus 168 ~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~~s~-----~~~~~~~~~g~~~~ 214 (343)
T cd08235 168 TVLVI-GAGPIGLLHAMLAKASGARKVIVSDLNE-----FRLEFAKKLGADYT 214 (343)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCCH-----HHHHHHHHhCCcEE
Confidence 44444 5788999999999999999444332221 23344567887543
No 421
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=22.41 E-value=3.9e+02 Score=25.28 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=33.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..++...+|.-|.+++..|+.+|.+.++..... .+.+.++.+|++-+.
T Consensus 148 ~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~------~~~~~~~~~g~~~~~ 195 (323)
T TIGR02823 148 PVLVTGATGGVGSLAVAILSKLGYEVVASTGKA------EEEDYLKELGASEVI 195 (323)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHhcCCcEEE
Confidence 455555569999999999999999866655332 233556788985433
No 422
>PRK06753 hypothetical protein; Provisional
Probab=22.37 E-value=1e+02 Score=30.28 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.8
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
|+..++|-.|.++|.+.++.|++++|+=.
T Consensus 3 V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 44578999999999999999999888753
No 423
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=22.28 E-value=3.6e+02 Score=27.94 Aligned_cols=53 Identities=30% Similarity=0.335 Sum_probs=38.6
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCc---------------HHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQD---------------MERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~---------------~~~~~~kv~~~~~~GAeVv~ 231 (382)
-|+.-++|-.|.+.|..+++.|.+++||-.... .+.....++.++.+|.+++.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 466678999999999999999999998864311 11122345678889998865
No 424
>PLN02527 aspartate carbamoyltransferase
Probab=22.21 E-value=2.9e+02 Score=27.28 Aligned_cols=53 Identities=9% Similarity=-0.052 Sum_probs=34.7
Q ss_pred EEecCcc---hHHHHHHHHHHHc-CCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEc
Q 016830 180 IAETGAG---QHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (382)
Q Consensus 180 Vv~aSsG---NhG~AlA~aA~~l-Gi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~ 233 (382)
|+-.+.+ |.+.+++.+++++ |++++++.|+.... +..-++.++..|.++..++
T Consensus 154 va~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 154 VGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKM-KDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCC-CHHHHHHHHHcCCEEEEEc
Confidence 4444444 5899999998887 99999999985311 1222344555677776653
No 425
>PRK06179 short chain dehydrogenase; Provisional
Probab=22.20 E-value=6.2e+02 Score=23.27 Aligned_cols=33 Identities=21% Similarity=0.127 Sum_probs=26.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
+..+|+.++|.-|.++|......|.++++....
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357888888999999999988899997766643
No 426
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=22.14 E-value=3.1e+02 Score=28.42 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=32.3
Q ss_pred chHHHHHHHHHH-hC---CCeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 162 NNAVGQALLAKR-LG---KTRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 162 Rga~~~l~~a~~-~g---~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+|..+.+..+.+ .+ ++..|+..+.||-|+-+|.-....|-+++.+--
T Consensus 188 ~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sd 238 (411)
T COG0334 188 YGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSD 238 (411)
T ss_pred eehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEc
Confidence 344554444322 22 345788899999999999888888888777653
No 427
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=22.05 E-value=1.1e+02 Score=30.61 Aligned_cols=29 Identities=41% Similarity=0.431 Sum_probs=25.5
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
|+..++|-.|.++|.+-++.|++++|+=.
T Consensus 6 v~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 6 IAVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 45578999999999999999999999874
No 428
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=22.00 E-value=1.2e+02 Score=28.28 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=24.9
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
|+.-++|-.|.++|...++.|++++|+=..
T Consensus 3 v~IiGaG~aGl~~A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 3 VVVVGAGPAGASAAYRLADKGLRVLLLEKK 32 (295)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 344688999999999999999998887644
No 429
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=21.81 E-value=3.5e+02 Score=28.10 Aligned_cols=53 Identities=28% Similarity=0.344 Sum_probs=38.2
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC---------------cHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ---------------DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~---------------~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++|-.|.+.|..+++.|.+++|+-... ..+......++++.+|.+++.
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 46668899999999999999999988884221 111112345678899999864
No 430
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=21.67 E-value=3e+02 Score=26.40 Aligned_cols=47 Identities=30% Similarity=0.399 Sum_probs=29.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
+++++ .++|.-|.+++..|+.+|++.++++.... .+...++.+|++-
T Consensus 167 ~~VLI-~g~g~vG~~~~~lak~~G~~~v~~~~~s~-----~~~~~~~~~g~~~ 213 (339)
T cd08232 167 KRVLV-TGAGPIGALVVAAARRAGAAEIVATDLAD-----APLAVARAMGADE 213 (339)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCcEEEEECCCH-----HHHHHHHHcCCCE
Confidence 34555 45688888988899999994344442211 2344567788743
No 431
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=21.66 E-value=5.8e+02 Score=26.96 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=7.5
Q ss_pred HHHcCCeEEEEeCC
Q 016830 196 CARFGLQCIVYMGA 209 (382)
Q Consensus 196 A~~lGi~~~IvmP~ 209 (382)
|..++.+++|+.-.
T Consensus 371 A~~l~akaIVv~T~ 384 (480)
T cd00288 371 AFELGAKAIVVLTT 384 (480)
T ss_pred HHhcCCCEEEEECC
Confidence 44456665555533
No 432
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=21.65 E-value=6.4e+02 Score=23.25 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=33.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+..++...+|..|.+++..++.+|.++++..+.. .+.+.++.+|++-+.
T Consensus 146 ~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~~ 194 (325)
T cd08253 146 ETVLVHGGSGAVGHAAVQLARWAGARVIATASSA------EGAELVRQAGADAVF 194 (325)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHcCCCEEE
Confidence 3455555578899999999999999866655432 233445667875443
No 433
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=21.61 E-value=4.4e+02 Score=25.23 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=33.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+++-..+|.-|.+++..|+.+|.++++....... ...+...++.+|++-+.
T Consensus 150 vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~--~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 150 VIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPD--LEELKERLKALGADHVL 200 (341)
T ss_pred EEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCc--chhHHHHHHhcCCCEEE
Confidence 4444446899999999999999998777653221 01244456778986544
No 434
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=21.54 E-value=8.2e+02 Score=24.43 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=43.2
Q ss_pred hCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 174 LGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 174 ~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
.| +-.||+.++.-=|.+.|.-=++.|++++++-...+ .....+.+..+.+++||..+..
T Consensus 48 ~g-~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~-KL~~v~kEI~~~~~vev~~i~~ 106 (312)
T KOG1014|consen 48 LG-SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQE-KLEAVAKEIEEKYKVEVRIIAI 106 (312)
T ss_pred cC-CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHHHhCcEEEEEEE
Confidence 45 55788777778999999998889999666654422 2245677888999988866544
No 435
>PRK06125 short chain dehydrogenase; Provisional
Probab=21.41 E-value=6.3e+02 Score=23.08 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=25.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
+..+++.++|.-|.++|......|.+++++..
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 35788888889999999998889997777654
No 436
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=21.38 E-value=6.2e+02 Score=24.55 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=38.7
Q ss_pred CCeEEEeecCCCCCCCccc-chHHHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 016830 143 GPHIYLKREDLNHTGAHKI-NNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (382)
Q Consensus 143 g~~IylK~E~lnpTGSfK~-Rga~~~l~~a~~~g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~ 210 (382)
-.|.-+..++-.-.|-+=| .|....+......-.++.++.-++|-.|+|++++...+|++-+.++..+
T Consensus 92 AVNTv~~~~~g~l~G~NTD~~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 92 AVNTVVIDATGHTTGHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CceEEEECCCCcEEEEcCCHHHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3455444344333454444 3333333321111112345557889999999999999999877667553
No 437
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.37 E-value=6.1e+02 Score=25.68 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=43.7
Q ss_pred CCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 175 g~~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
+++..|+..++|--|...-.+|+.+|-.=+|+..-. ..+++..+.+||+++.-..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~-----~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV-----ANRLELAKKFGATVTDPSS 222 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC-----HHHHHHHHHhCCeEEeecc
Confidence 345567889999999999999999999888877443 3477788999999976543
No 438
>PRK10083 putative oxidoreductase; Provisional
Probab=21.33 E-value=4e+02 Score=25.55 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=34.1
Q ss_pred CeEEEecCcchHHHHHHHHHHH-cCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 177 TRIIAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~-lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
+..|+..++|--|.+++..|+. +|.+.++.+... ..|.++++.+|++-++
T Consensus 161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~-----~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRI-----DERLALAKESGADWVI 211 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCC-----HHHHHHHHHhCCcEEe
Confidence 3344445578888888888886 699877766442 2466778889996554
No 439
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.31 E-value=7.5e+02 Score=23.89 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=34.8
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~ 235 (382)
|..-++|+.|.++|......|.+++++-...... .. +.+ -.++++.+-..
T Consensus 7 I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~~-~~---~~~--~~advvi~~vp 56 (308)
T PRK14619 7 IAILGAGAWGSTLAGLASANGHRVRVWSRRSGLS-LA---AVL--ADADVIVSAVS 56 (308)
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEeCCCCCC-HH---HHH--hcCCEEEEECC
Confidence 4456899999999999999999998887653211 11 112 26888776543
No 440
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=21.30 E-value=1.5e+02 Score=29.75 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=26.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
|..-++|+.|+.++.+|+++|++++++-|.
T Consensus 5 igilG~Gql~~ml~~aa~~lG~~v~~~d~~ 34 (372)
T PRK06019 5 IGIIGGGQLGRMLALAAAPLGYKVIVLDPD 34 (372)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 444577999999999999999999999876
No 441
>PLN02621 nicotinamidase
Probab=21.27 E-value=5.1e+02 Score=23.34 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=40.1
Q ss_pred HHhCCCeEEEecCcchHHHHH-HHHHHHcCCeEEEEeCCC---cHHHHHHHHHHHHHcCCEEEE
Q 016830 172 KRLGKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhG~Al-A~aA~~lGi~~~IvmP~~---~~~~~~~kv~~~~~~GAeVv~ 231 (382)
++.|.+..|++.-..|.++-. |..|..+|++++|+.... +.+....-+..|+..+++|..
T Consensus 123 ~~~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~v~v~~Da~as~~~~~h~~al~~~~~~~~~v~~ 186 (197)
T PLN02621 123 RKIGVKEVIVTGVMTNLCCETTAREAFVRGFRVFFSTDATATANEELHEATLKNLAYGFAYLVD 186 (197)
T ss_pred HHCCCCEEEEEecccchhHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHhhceEeec
Confidence 456777788877777777644 455777999999888652 222233456667677887753
No 442
>PTZ00376 aspartate aminotransferase; Provisional
Probab=21.20 E-value=8.4e+02 Score=24.39 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=53.9
Q ss_pred CCCCcccchHHHHHHHHHH---hCCCeEEE-ecCcchHHHHHHHHH--HHcCCeEEEEeCC-CcHHHHHHHHHHHHHcCC
Q 016830 155 HTGAHKINNAVGQALLAKR---LGKTRIIA-ETGAGQHGVATATVC--ARFGLQCIVYMGA-QDMERQALNVFRMRLLGA 227 (382)
Q Consensus 155 pTGSfK~Rga~~~l~~a~~---~g~~~~Vv-~aSsGNhG~AlA~aA--~~lGi~~~IvmP~-~~~~~~~~kv~~~~~~GA 227 (382)
+.|.-..|-+....+.-.. ...+.+++ .+.+|+.+..++..+ ..++---.|++|+ ..+ .-...++.+|+
T Consensus 71 ~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~----~~~~~~~~~G~ 146 (404)
T PTZ00376 71 IEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWP----NHVNIFKSAGL 146 (404)
T ss_pred CCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCch----hHHHHHHHcCC
Confidence 3576677776555332111 12334443 355668887776542 2232223455554 221 12345889999
Q ss_pred EEEEEcCCC-C----CHHHHHHHHHHHHHHccCCceEEecccCCCCCc
Q 016830 228 EVRAVHSGT-A----TLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (382)
Q Consensus 228 eVv~v~~~~-~----~~~da~~~a~~~~~~~~~~~~y~~~s~~n~~p~ 270 (382)
+++.++... + ++++ ..++.+.. ......|++++.+||...
T Consensus 147 ~~~~v~l~~~~~~~~d~~~-l~~~~~~~--~~~~~~~~~~~p~NPTG~ 191 (404)
T PTZ00376 147 NVKEYRYYDPKTKGLDFDG-MLEDLRTA--PNGSVVLLHACAHNPTGV 191 (404)
T ss_pred ceeeccccCcccCCcCHHH-HHHHHHhC--CCCCEEEEeCCCCCCCCC
Confidence 999987511 1 2222 22222211 112345766777766653
No 443
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=21.10 E-value=2.1e+02 Score=31.78 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=37.3
Q ss_pred EEEecCcchHHHHHHHHHHHcCCe-EEEEeCCCcH--HHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDM--ERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~-~~IvmP~~~~--~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++||.|.-+|..+.++|.+ ++++...... ......+..++..|.+++.
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 456678999999999999999998 8888764211 1111233456778888765
No 444
>PRK07538 hypothetical protein; Provisional
Probab=21.08 E-value=1.1e+02 Score=30.83 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=24.9
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP 208 (382)
|+..++|=.|.++|.+.++.|++++||=.
T Consensus 3 V~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 3 VLIAGGGIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 44578999999999999999999888753
No 445
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=21.03 E-value=1.1e+02 Score=29.94 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=25.2
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~ 209 (382)
|+..++|-.|.++|++-++.|++++|+=-.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~ 31 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEAT 31 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 344689999999999999999999887644
No 446
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=20.97 E-value=1.9e+02 Score=25.68 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=63.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCc
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~~~~~ 257 (382)
++|..-+.|+-|+++|..++.+|++++.+=|..... . .....|.+. .++++.. +. .
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~--~----~~~~~~~~~-------~~l~ell----~~-------a 92 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPE--E----GADEFGVEY-------VSLDELL----AQ-------A 92 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHH--H----HHHHTTEEE-------SSHHHHH----HH--------
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChh--h----hccccccee-------eehhhhc----ch-------h
Confidence 355667899999999999999999999998875421 1 234445422 2344432 21 1
Q ss_pred eEEecccCCCCCcchhhhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCChhhHHhH--hhhhhhcCCCcEEEEEeCC
Q 016830 258 HYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMG--LFHEFVNDKDVRLIGVEAA 331 (382)
Q Consensus 258 ~y~~~s~~n~~p~~~~v~~g~~tig~Ei~~Qi~e~~g~~pD~vvvpvG~GG~~aG--i~~~~~~~~~vrViGVep~ 331 (382)
.++... -|... +-+..++.+.+.++ +++++++-+|-|+.+-- +..+++ +..+.=.+.+..
T Consensus 93 Div~~~----~plt~---~T~~li~~~~l~~m------k~ga~lvN~aRG~~vde~aL~~aL~-~g~i~ga~lDV~ 154 (178)
T PF02826_consen 93 DIVSLH----LPLTP---ETRGLINAEFLAKM------KPGAVLVNVARGELVDEDALLDALE-SGKIAGAALDVF 154 (178)
T ss_dssp SEEEE-----SSSST---TTTTSBSHHHHHTS------TTTEEEEESSSGGGB-HHHHHHHHH-TTSEEEEEESS-
T ss_pred hhhhhh----hcccc---ccceeeeeeeeecc------ccceEEEeccchhhhhhhHHHHHHh-hccCceEEEECC
Confidence 122211 12110 11222335544443 58899999999987643 333343 344555555543
No 447
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=20.93 E-value=2.8e+02 Score=21.20 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=28.1
Q ss_pred cccchHHHHHHHHH-HhCCCeEEEecCcchHH-HHHHHHHHHcCCeEEEEeCC
Q 016830 159 HKINNAVGQALLAK-RLGKTRIIAETGAGQHG-VATATVCARFGLQCIVYMGA 209 (382)
Q Consensus 159 fK~Rga~~~l~~a~-~~g~~~~Vv~aSsGNhG-~AlA~aA~~lGi~~~IvmP~ 209 (382)
|.|+..+...+... +.....+|+..++-.-+ .-.+..|+..|++++.|-|+
T Consensus 14 ~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 14 WTDHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred cccHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 66777666665443 33444455544331112 22233377889999887665
No 448
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=20.91 E-value=2.9e+02 Score=26.99 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=33.6
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
.++.-+.|..|++++..++.+|.+++++-... .+..+.+.+|++.+
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~------~~~~~~~~~G~~~~ 199 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGARKS------AHLARITEMGLSPF 199 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECCH------HHHHHHHHcCCeee
Confidence 45556789999999999999998777765431 23445677898754
No 449
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=20.85 E-value=5.5e+02 Score=25.37 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=29.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 180 Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
|+.+++.+.+..++..+....=+-.|++|.-.- ..-...++.+|++++.++.
T Consensus 94 I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y---~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 94 ISVGNGSDELIRSLLIATCLGGEGSILVAEPTF---SMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred EEEcCChHHHHHHHHHHHcCCCCCeEEEcCCCh---HHHHHHHHHcCCEEEEecC
Confidence 444555677776555544332222455554221 1223457889999999875
No 450
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=20.70 E-value=6.1e+02 Score=23.55 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=6.5
Q ss_pred HcCCeEEEEeCC
Q 016830 198 RFGLQCIVYMGA 209 (382)
Q Consensus 198 ~lGi~~~IvmP~ 209 (382)
.+|.+++.++.+
T Consensus 81 ~~g~~v~c~i~d 92 (198)
T PF02570_consen 81 KLGNEVYCYIDD 92 (198)
T ss_dssp TCT-EEEECTTS
T ss_pred HcCCcEEEECCC
Confidence 356666666644
No 451
>PRK06370 mercuric reductase; Validated
Probab=20.41 E-value=4e+02 Score=27.36 Aligned_cols=53 Identities=25% Similarity=0.258 Sum_probs=36.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC------cHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ------DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~------~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++|..|.-+|...+.+|.+++++.+.. +++....-...++..|.+++.
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~ 231 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRL 231 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEe
Confidence 35557889999999999999999999998642 111122234456777877653
No 452
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=20.35 E-value=3.7e+02 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=16.1
Q ss_pred EEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcC
Q 016830 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (382)
Q Consensus 203 ~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~ 234 (382)
..|+...+..++ --..++.+| ++.+|..
T Consensus 2 ~~i~~G~g~l~~---l~~~l~~~g-r~lvVt~ 29 (366)
T PF00465_consen 2 TKIIFGRGALEE---LGEELKRLG-RVLVVTD 29 (366)
T ss_dssp SEEEESTTGGGG---HHHHHHCTT-EEEEEEE
T ss_pred CcEEEccCHHHH---HHHHHHhcC-CEEEEEC
Confidence 456666655322 223467778 8877753
No 453
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=20.34 E-value=1.5e+02 Score=30.28 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=23.3
Q ss_pred CEEEEcCChhhHHhHhhhhhhcCCCcEEEEEeCCCC
Q 016830 298 DVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGF 333 (382)
Q Consensus 298 D~vvvpvG~GG~~aGi~~~~~~~~~vrViGVep~g~ 333 (382)
|.|||..|.+|.+|++..+- ...+|+-||..+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr---~G~~VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR---AGAKVLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH---TTS-EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHH---CCCEEEEEECCcc
Confidence 78999999999998887764 3569999998764
No 454
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=20.32 E-value=4e+02 Score=27.22 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=37.0
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC------cHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ------DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~------~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++|..|.-+|..-+.+|.+++++.+.. +.+....-.+.++..|.+++.
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~ 235 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRH 235 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 34557899999999999999999999997542 222222334456677877653
No 455
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=20.28 E-value=4.4e+02 Score=26.44 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHH----HHHcCCEEEEEc
Q 016830 186 GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR----MRLLGAEVRAVH 233 (382)
Q Consensus 186 GNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~----~~~~GAeVv~v~ 233 (382)
.|.+.+++.+++++|++++++.|+.-.- +..-+.. .+..|+++...+
T Consensus 164 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 164 TQVCVSLMFIATKMGMDFVHFGPKGYQL-PEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred chHHHHHHHHHHhCCCEEEEECCCcccc-CHHHHHHHHHHHHhcCCeEEEEc
Confidence 4899999999999999999999984210 1111222 234688877653
No 456
>PRK06484 short chain dehydrogenase; Validated
Probab=20.26 E-value=9.5e+02 Score=24.70 Aligned_cols=71 Identities=18% Similarity=0.111 Sum_probs=40.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 016830 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (382)
Q Consensus 177 ~~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~v~~~~~~~~da~~~a~~~~~~~ 253 (382)
+..+|+.++|.-|.++|..-...|.+++++-.... .. ....+.+|.+++.+..+-.+. +.+..+.+...++
T Consensus 270 k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~-~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 340 (520)
T PRK06484 270 RVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAE----GA-KKLAEALGDEHLSVQADITDE-AAVESAFAQIQAR 340 (520)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HH-HHHHHHhCCceeEEEccCCCH-HHHHHHHHHHHHH
Confidence 34788888888999999998889998777643211 11 112234576665444322222 3344455544333
No 457
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=20.22 E-value=6.9e+02 Score=23.03 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=31.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv~ 231 (382)
..++...+|..|.+++..++.+|.+++++.... .+.+.++.+|++...
T Consensus 142 ~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~~ 189 (323)
T cd08241 142 TVLVLGAAGGVGLAAVQLAKALGARVIAAASSE------EKLALARALGADHVI 189 (323)
T ss_pred EEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCH------HHHHHHHHcCCceee
Confidence 345544458999999999999999965554331 133445667875544
No 458
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=20.17 E-value=1.6e+02 Score=25.80 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=20.3
Q ss_pred EEEecCcch-----HHHHHHHHHHHcCCeEEEEeC
Q 016830 179 IIAETGAGQ-----HGVATATVCARFGLQCIVYMG 208 (382)
Q Consensus 179 ~Vv~aSsGN-----hG~AlA~aA~~lGi~~~IvmP 208 (382)
..+..++|. ++.-+|..|+..|.+++||.-
T Consensus 5 l~ii~~sg~~Dk~~~~lilA~~Aaa~G~eV~iFfT 39 (148)
T PF13686_consen 5 LAIIVFSGTLDKAYPALILASGAAAMGMEVTIFFT 39 (148)
T ss_dssp EEEEE---SHHHHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 333456673 788899999999999999993
No 459
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=20.15 E-value=3.7e+02 Score=26.12 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=31.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeV 229 (382)
+.++.-+.|+-|+++|..++.+|.+++++-... .+..+...+|.+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~------~~~~~~~~~g~~~ 197 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS------ADLARITEMGLIP 197 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHCCCee
Confidence 346667889999999999999999776654331 1233345566653
No 460
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=20.12 E-value=5.7e+02 Score=24.96 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=30.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCcHHHHHHHHHHHHHcCCEEE
Q 016830 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (382)
Q Consensus 178 ~~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~~~~~~~~kv~~~~~~GAeVv 230 (382)
+.++. ++|..|.+++..|+.+|.+.+++..... .+.+.++.+|++-+
T Consensus 190 ~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~s~-----~~~~~~~~~g~~~v 236 (367)
T cd08263 190 TVAVI-GVGGVGSSAIQLAKAFGASPIIAVDVRD-----EKLAKAKELGATHT 236 (367)
T ss_pred EEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHhCCceE
Confidence 35554 6788999999999999998444442221 23445677887543
No 461
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=20.06 E-value=3.5e+02 Score=28.26 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=38.4
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC---------------cHHHHHHHHHHHHHcCCEEEE
Q 016830 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ---------------DMERQALNVFRMRLLGAEVRA 231 (382)
Q Consensus 179 ~Vv~aSsGNhG~AlA~aA~~lGi~~~IvmP~~---------------~~~~~~~kv~~~~~~GAeVv~ 231 (382)
.|+.-++|-.|.+.|...++.|.+++||-... ..+......+.++.+|.+++.
T Consensus 145 ~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 45667889999999999999999999985321 112222345677889998864
Done!